Citrus Sinensis ID: 013578

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
Protein Sequence
MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKKSHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLESS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEcccccccEEEEEcccccEEEccccccccccccccEEEEEEcccccEEEEccccccEEEEEccccccccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEcccccEEEcccccccEEEEEcccccEEEEEcccEEEEEcccccEEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccEEEEccccccccccccccEEEEEEcccccEEEEEccccEEEEEccccccHHcccccccccEEEEEEcccccccccccccEEEEccccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEEcccccccccccEEEEEccccccEEEEccccEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEcccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEccccccccccccEEEEcccccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEccccccccccccEEEEEEccccEEEEEEccccccc
Coil and Loop (DISEMBL)
MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAktelepdhqkkptkpsqpiskkshskphshshgdkdqnkrhhpldvntlkghgdsvtglcfssdgkclatACADGVirvhklddassksfkflrinlppggpptavafadnATSIVVATHNlsgcslymygeekaistnegkqqsklpgpeikwehhkvhDKRAILTLFgasatygtadgstiiascsegtdisiwhgktgkllgnvdtnqlknnmaaispNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLcfapnseqiitaskdgtlrVWNINVryhldedpktlkvlpiplldsngatlqydrlslssdgkilaATHGSTLQWLSVETGKVLDTAEKAhegeitcmawapktipmgnqqVSVLATSSVDKKVKLWLAPSLESS
Flexible Loop (DISEMBL)
MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIaktelepdhqkkptkpsqpiskkshskphshshgdkdqnkrhHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIitaskdgtlRVWNINVRyhldedpktlkvLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKlwlapsless
Low Complexity Region (SEG)
MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTkpsqpiskkshskphshshGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLESS
Disordered region (IsUnstruct)
***VLSITVVSVVLGALIAIIFFKSYFTKR*********************************************************KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE*******************IKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL*******
Disordered Region (DISOPRED)
**PVLSITVVSVVLGALIAIIFFKSYFTKR***************************************HGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL***
Disordered Region (DISEMBL)
MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTEL***********************************RHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI************GPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLESS
Disordered Region (DISPRO)
**PVLSITVVSVVLGALIAIIFFKSYFTKRRS*IKS********************************SHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS****
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKKSHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLESS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	440	2.2.26 [Sep-21-2011]
Q9Y4P3	447	Transducin beta-like prot	yes	no	0.743	0.731	0.295	3e-33
Q9R099	442	Transducin beta-like prot	yes	no	0.738	0.735	0.296	9e-33
Q8YV57	1683	Uncharacterized WD repeat	yes	no	0.704	0.184	0.282	3e-18
B3S4I5	409	Lissencephaly-1 homolog O	N/A	no	0.422	0.454	0.223	3e-12
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.704	0.246	0.266	4e-12
Q9NDC9	404	Lissencephaly-1 homolog O	no	no	0.431	0.470	0.270	8e-12
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.627	0.180	0.244	7e-11
D3ZW91	477	POC1 centriolar protein h	no	no	0.445	0.410	0.254	8e-11
P25635	923	Periodic tryptophan prote	yes	no	0.338	0.161	0.278	1e-10
C4Q0P6	417	Lissencephaly-1 homolog O	N/A	no	0.420	0.443	0.247	1e-10

>sp|Q9Y4P3|TBL2_HUMAN Transducin beta-like protein 2 OS=Homo sapiens GN=TBL2 PE=1 SV=1

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 177/366 (48%), Gaps = 39/366 (10%)

Query: 52  KPSQPISKKSHSKPHSHSHGDKDQNKRH-------------HPLDVNTLKGHGDSVTGLC 98
           +  +P  +K++  P   S G K Q +               H L    LK H  +++ + 
Sbjct: 38  RSGRPACQKANGFPPDKSSGSKKQKQYQRIRKEKPQQHNFTHRLLAAALKSHSGNISCMD 97

Query: 99  FSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH 158
           FSS+GK LAT   D  IR+    D   +  + +R N+      T V F+ +  + +V   
Sbjct: 98  FSSNGKYLATCADDRTIRIWSTKDFLQREHRSMRANVELD-HATLVRFSPDCRAFIVWLA 156

Query: 159 NLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218
           N  G +L ++     ++  E    +    PE   + HK      ++ +       G A+ 
Sbjct: 157 N--GDTLRVF----KMTKREDGGYTFTATPEDFPKKHKA----PVIDI-------GIANT 199

Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
              I + S  T + IW  K G++L  ++TNQ+ N  AA+SP GRF+A+  FT DVKVWE+
Sbjct: 200 GKFIMTASSDTTVLIWSLK-GQVLSTINTNQMNNTHAAVSPCGRFVASCGFTPDVKVWEV 258

Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
            + K G  + V    +LKGH +AV    F+ +S ++ + SKDGT ++W+ +V Y   +DP
Sbjct: 259 CFGKKGEFQEVVRAFELKGHSAAVHSFAFSNDSRRMASVSKDGTWKLWDTDVEYKKKQDP 318

Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEG 398
             LK       ++ GA     RL+LS + ++LA   GS++   +   G+  +  E+ H G
Sbjct: 319 YLLKTGRFE--EAAGAAPC--RLALSPNAQVLALASGSSIHLYNTRRGEKEECFERVH-G 373

Query: 399 EITCMA 404
           E  C+A
Sbjct: 374 E--CIA 377

Homo sapiens (taxid: 9606)

>sp|Q9R099|TBL2_MOUSE Transducin beta-like protein 2 OS=Mus musculus GN=Tbl2 PE=2 SV=2

 Score =  141 bits (356), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 175/364 (48%), Gaps = 39/364 (10%)

Query: 52  KPSQPISKKSHSKPHSHSHGDKDQNKR-----------HHPLDVNTLKGHGDSVTGLCFS 100
           KPSQP+ +K  ++P       + QN+R            HPL    LK H  +++ + FS
Sbjct: 37  KPSQPVCQKE-NEPKKSGSKKQKQNQRVRKEKPQQHSFTHPLLAAALKSHSGNISCMDFS 95

Query: 101 SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160
           S+GK LAT   D  +R+    D   +  + +R N+      T V F+ +  + +V   N 
Sbjct: 96  SNGKYLATCADDRTVRIWSTKDFLQREHRSMRANVELDHA-TLVRFSPDCRAFIVWLAN- 153

Query: 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST 220
            G +L ++     ++  E    +    PE   + HK      I+ +       G AD   
Sbjct: 154 -GDTLRVF----KMTKREDGGFTFTATPEDFPKKHKA----PIINI-------GIADTGK 197

Query: 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVY 280
            I + S  T + IW+ K G++L  ++TNQ+ N+ A ISP  RF+ +  FT DVKVWE+ +
Sbjct: 198 FIMTASSDTTVLIWNLK-GQVLSTINTNQMNNSHAVISPCSRFVGSCGFTPDVKVWEVCF 256

Query: 281 SKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKT 340
            K G  + V    +LKGH ++V    F+ +S ++ + SKDGT ++W+ +V Y   +DP  
Sbjct: 257 GKKGEFQEVLRAFELKGHSASVHSFAFSNDSRRMASVSKDGTWKLWDTDVEYKKQQDPYL 316

Query: 341 LKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEI 400
           L+           A+    RL+LS D  +LA   G+ +   +   G+  +  E  H GE 
Sbjct: 317 LRTGRF-----EEASTMPCRLALSPDTHVLALATGTNIHLFNTRRGEKEEYFECVH-GE- 369

Query: 401 TCMA 404
            C+A
Sbjct: 370 -CIA 372

Mus musculus (taxid: 10090)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 167/365 (45%), Gaps = 55/365 (15%)

Query: 84   VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLR--------INL 135
            + TL GH D V  L FS DGK LA+A AD  I++ ++ D   K  K L+        +N 
Sbjct: 1232 LKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADG--KLVKTLKGHNDSVWDVNF 1289

Query: 136  PPGGPPTAVAFADNATSIV----VATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIK 191
               G   A A  DN   +     +     +G S  +Y       +N     S L      
Sbjct: 1290 SSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASAS-LDNTIRL 1348

Query: 192  WEHHKVHDKRAILTLFGASATYGTA---DGSTIIASCSEGTDISIWHGKTGKLLGNVDTN 248
            W+   +     +  L G S  Y  +   DGS IIA+     +I +WH + G LL  +  N
Sbjct: 1349 WQRPLI---SPLEVLAGNSGVYAVSFLHDGS-IIATAGADGNIQLWHSQDGSLLKTLPGN 1404

Query: 249  QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
            +    + + +P G  +A+A     VK+W +   +DG  KA+ +++   GH + V  + F+
Sbjct: 1405 KAIYGI-SFTPQGDLIASANADKTVKIWRV---RDG--KALKTLI---GHDNEVNKVNFS 1455

Query: 309  PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK 368
            P+ + + +AS+D T+++WN++       D K  K L        G T +   +S S DGK
Sbjct: 1456 PDGKTLASASRDNTVKLWNVS-------DGKFKKTL-------KGHTDEVFWVSFSPDGK 1501

Query: 369  ILA-ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK 427
            I+A A+   T++     +G ++ +   AH   +  + + P          S+LA++S DK
Sbjct: 1502 IIASASADKTIRLWDSFSGNLIKSL-PAHNDLVYSVNFNPDG--------SMLASTSADK 1552

Query: 428  KVKLW 432
             VKLW
Sbjct: 1553 TVKLW 1557

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|B3S4I5|LIS1_TRIAD Lissencephaly-1 homolog OS=Trichoplax adhaerens GN=TRIADDRAFT_50647 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 102/228 (44%), Gaps = 42/228 (18%)

Query: 221 IIASCSEGTDISIWHGKTGK----LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
           ++ S SE   + IW  ++G     L G+ D+ Q      A   +G+ LA+++    VK+W
Sbjct: 121 VMVSSSEDASMKIWDYESGDFERTLRGHTDSVQ----DLAFDSSGKLLASSSADMTVKIW 176

Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
           +         +     M L+GH   V+ +CF P+ + ++++S+D T+++W +   Y    
Sbjct: 177 DF--------QTFECRMTLRGHDHNVSSVCFLPSGDFLLSSSRDKTIKMWEVATGY---- 224

Query: 337 DPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAH 396
                      + +  G      R++++SDG ++A+        +   + K      + H
Sbjct: 225 ----------CVYNFEGHREWVRRVAVASDGSLMASCSNDQTVRIWSLSSKECKEELRGH 274

Query: 397 EGEITCMAWAPKT------------IPMGNQQVSVLATSSVDKKVKLW 432
           E  + C+ WAP++            +P G +    LA+ S D+ +K+W
Sbjct: 275 EHVVECIKWAPESCNRYINEASGTEVPKGQKSGPFLASGSRDRVIKIW 322

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Trichoplax adhaerens (taxid: 10228)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 73.2 bits (178), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 158/368 (42%), Gaps = 58/368 (15%)

Query: 84   VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
            + TL GH D V  + FS DG  LA++ AD  I   KL D S    K LR      G   +
Sbjct: 761  LQTLTGHTDWVRCVAFSPDGNTLASSAADHTI---KLWDVSQG--KCLRTLKSHTGWVRS 815

Query: 144  VAF-ADNAT--------SIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKL-----PGPE 189
            VAF AD  T        +I +  ++   C     G   ++ +      SK+         
Sbjct: 816  VAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRT 875

Query: 190  IKWEHHKVHDKRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245
            IK    + H    I TL G      +   + DG T+ A  S    + +W+ +TG+ L   
Sbjct: 876  IKLWDCQTH--ICIKTLHGHTNEVCSVAFSPDGQTL-ACVSLDQSVRLWNCRTGQCLKAW 932

Query: 246  DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305
              N       A SP+ + LA+ +    VK+W+    K         +  L+GH   +  +
Sbjct: 933  YGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGK--------YISSLEGHTDFIYGI 984

Query: 306  CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365
             F+P+S+ + +AS D ++R+WNI+          T +   I L  ++        +    
Sbjct: 985  AFSPDSQTLASASTDSSVRLWNIS----------TGQCFQILLEHTDWVY----AVVFHP 1030

Query: 366  DGKILA-ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS 424
             GKI+A  +   T++  ++ TG+ L T  + H  +I  MAW+P           +LA++S
Sbjct: 1031 QGKIIATGSADCTVKLWNISTGQCLKTLSE-HSDKILGMAWSPDG--------QLLASAS 1081

Query: 425  VDKKVKLW 432
             D+ V+LW
Sbjct: 1082 ADQSVRLW 1089

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q9NDC9|LIS1_CAEEL Lissencephaly-1 homolog OS=Caenorhabditis elegans GN=lis-1 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 32/222 (14%)

Query: 220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIV 279
           TI+ASCSE   I +W  +TG+L   +  +    N  AI   G+ L + +    +K+W+  
Sbjct: 119 TIMASCSEDATIKVWDYETGQLERTLKGHTDAVNDIAIDAAGKQLVSCSSDLSIKLWDFG 178

Query: 280 YSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK 339
            + D L         LKGH+  V+ + F P  + +++AS+D T++ W+I+  Y       
Sbjct: 179 QTYDCL-------KSLKGHEHTVSSVTFLPTGDFVLSASRDHTIKQWDISTGY------- 224

Query: 340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQWLSVETGKVLDTAEKAHEG 398
                   +    G       + +S+DG + A A+   T+   S  T K      + HE 
Sbjct: 225 -------CVYTFRGHNDWVRMIRISNDGTLFASASLDQTVTVWSFAT-KSAKLVLRDHEH 276

Query: 399 EITCMAWAPKTI--------PMGNQQVSVLATSSVDKKVKLW 432
            + C+ WAP T         P GN    +L + S D+ +K W
Sbjct: 277 AVECVEWAPDTAYTNVTGQQPEGN-STHILFSGSRDRSIKAW 317

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as nuclear migration during cell division. Required for neuronal cell differentiation.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 68.9 bits (167), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 144/356 (40%), Gaps = 80/356 (22%)

Query: 86   TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLR--------INLPP 137
            TL+GH + V  + FS DG  LA+   D  +R+   D +SSK    L+        +   P
Sbjct: 1153 TLQGHTNWVNAVAFSPDGATLASGSGDQTVRL--WDISSSKCLYILQGHTSWVNSVVFNP 1210

Query: 138  GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKV 197
             G   A   +D                L+     K + T +G            W +  V
Sbjct: 1211 DGSTLASGSSDQTVR------------LWEINSSKCLCTFQG---------HTSWVNSVV 1249

Query: 198  HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI 257
             +                 DGS ++AS S    + +W   + K L     +    N  A 
Sbjct: 1250 FN----------------PDGS-MLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAF 1292

Query: 258  SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317
            +P+G  LA+ +    V++WEI  SK         +   +GH S V+ + F+P+   + + 
Sbjct: 1293 NPDGSMLASGSGDQTVRLWEISSSK--------CLHTFQGHTSWVSSVTFSPDGTMLASG 1344

Query: 318  SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG-S 376
            S D T+R+W+I+          + + L   L    G T     +  S DG ILA+  G  
Sbjct: 1345 SDDQTVRLWSIS----------SGECLYTFL----GHTNWVGSVIFSPDGAILASGSGDQ 1390

Query: 377  TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            T++  S+ +GK L T +  H   +  + ++P          ++LA+ S D+ V+LW
Sbjct: 1391 TVRLWSISSGKCLYTLQ-GHNNWVGSIVFSPDG--------TLLASGSDDQTVRLW 1437

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|D3ZW91|POC1B_RAT POC1 centriolar protein homolog B OS=Rattus norvegicus GN=Poc1b PE=2 SV=1

 Score = 68.9 bits (167), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 48/244 (19%)

Query: 89  GHGDSVTGLCFSSDGKCLATACADGVIRVHKLD-DASSKSFKFLRINLPPGGPPTAVAFA 147
           GH D VT L FS  G  LA+A  D  +R+  LD    S  FK          P  +V F+
Sbjct: 58  GHKDVVTSLQFSPQGNLLASASRDKTVRLWVLDRKGKSSEFK------AHTAPVRSVDFS 111

Query: 148 DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLF 207
            +   +V A+            E+K+I                 W  ++   +R + +L+
Sbjct: 112 ADGQFLVTAS------------EDKSIKV---------------WSMYR---QRFLYSLY 141

Query: 208 GASATYGTADGS---TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFL 264
             +     A  S    +I SCSE   I IW   + + + N   +    N    SPNG  +
Sbjct: 142 RHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTSKQCVNNFSDSVGFANFVDFSPNGTCI 201

Query: 265 AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLR 324
           A+A     V++W+I  ++         +   + H   V  L F P+   ++TAS DGT++
Sbjct: 202 ASAGSDHAVRIWDIRMNR--------LLQHYQVHSCGVNCLSFHPSGNSLVTASSDGTVK 253

Query: 325 VWNI 328
           + ++
Sbjct: 254 ILDL 257

Involved in early steps of centriole duplication, as well as in the later steps of centriole length control. Required for ciliogenesis.

Rattus norvegicus (taxid: 10116)

>sp|P25635|PWP2_YEAST Periodic tryptophan protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PWP2 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 34/183 (18%)

Query: 253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE 312
           N  A SP+G  +  A+    +KVW+I     G   A       + H S+VT + FA   +
Sbjct: 349 NSLAYSPDGSRVVTASEDGKIKVWDIT---SGFCLAT-----FEEHTSSVTAVQFAKRGQ 400

Query: 313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372
            + ++S DGT+R W++ +RY      +  +        +    +Q++ L++   G+++ A
Sbjct: 401 VMFSSSLDGTVRAWDL-IRY------RNFRTF------TGTERIQFNCLAVDPSGEVVCA 447

Query: 373 THGSTLQ---WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKV 429
                     W SV+TG++LD A   HEG ++C++++        Q+ SVLA++S DK +
Sbjct: 448 GSLDNFDIHVW-SVQTGQLLD-ALSGHEGPVSCLSFS--------QENSVLASASWDKTI 497

Query: 430 KLW 432
           ++W
Sbjct: 498 RIW 500

Required for bud-site selection and cell separation. Also involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 37/222 (16%)

Query: 221 IIASCSEGTDISIWHGKTGK----LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
           +  S SE   I +W  +TG+    L G+ D+ Q      A  P+G+FLA+ +    VK+W
Sbjct: 136 VFVSASEDASIKVWDYETGEFEHTLKGHTDSVQ----DVAFDPSGKFLASCSADMQVKLW 191

Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
           +    +         +  L GH   V+ + F P+ + +++AS+D T+++W ++  Y    
Sbjct: 192 DFTIYQ--------CIKTLTGHDHNVSSVAFLPSGDFLVSASRDKTIKMWEVSTGYC--- 240

Query: 337 DPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGKVLDTAEKA 395
             KT            G T     +  S +G +LA+ ++  T++  SVE+ +      + 
Sbjct: 241 -TKTFI----------GHTEWIRSVRPSPEGNLLASCSNDHTIRIWSVES-RECQVVLRG 288

Query: 396 HEGEITCMAWAP-----KTIPMGNQQVSVLATSSVDKKVKLW 432
           HE  + C+AWA       ++P       +L + S D+ ++ W
Sbjct: 289 HEHVVECIAWASHPQNLNSLPSSMNSSLLLVSGSRDRTIRFW 330

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Schistosoma mansoni (taxid: 6183)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
255541312	438	nucleotide binding protein, putative [Ri	0.995	1.0	0.763	0.0
225453901	439	PREDICTED: transducin beta-like protein	0.997	1.0	0.756	0.0
224063858	438	predicted protein [Populus trichocarpa]	0.993	0.997	0.746	0.0
356568276	429	PREDICTED: uncharacterized protein LOC10	0.975	1.0	0.752	0.0
356532101	435	PREDICTED: transducin beta-like protein	0.988	1.0	0.738	0.0
296089146	449	unnamed protein product [Vitis vinifera]	0.934	0.915	0.759	0.0
449432249	434	PREDICTED: transducin beta-like protein	0.984	0.997	0.748	0.0
18411222	430	transducin/WD40 domain-containing protei	0.975	0.997	0.724	0.0
297814325	430	transducin family protein [Arabidopsis l	0.975	0.997	0.712	0.0
224127386	451	predicted protein [Populus trichocarpa]	0.988	0.964	0.690	1e-180

>gi|255541312|ref|XP_002511720.1| nucleotide binding protein, putative [Ricinus communis] gi|223548900|gb|EEF50389.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/440 (76%), Positives = 386/440 (87%), Gaps = 2/440 (0%)

Query: 1   MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKK 60
           MDPVL I +VS++LGALIAI+FFKSYF KR+SEIKSIA  EL  D  KKPTK SQP++KK
Sbjct: 1   MDPVLPIAIVSILLGALIAILFFKSYFLKRKSEIKSIAPPELRSD-PKKPTKHSQPVTKK 59

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
           SHSKPHSH+  DK+QN+RHHPLD+NTLKGHGD+VTGLCFS+DG+ LATACADGV+RV KL
Sbjct: 60  SHSKPHSHA-ADKEQNRRHHPLDLNTLKGHGDAVTGLCFSNDGRSLATACADGVVRVFKL 118

Query: 121 DDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180
           DDASS+SFKFLRINLP GG P AV F+D+A+S+VVA+  LSG SLY+YGEE    +N+ K
Sbjct: 119 DDASSRSFKFLRINLPAGGIPVAVTFSDDASSVVVASQTLSGASLYLYGEENPKPSNDSK 178

Query: 181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240
           QQ KLP PEIKWEH K+H+ +A++TL G  ATYG+ADGS+I+ASCSEGTDI +WHGKTG 
Sbjct: 179 QQPKLPLPEIKWEHRKIHENKAVITLVGTVATYGSADGSSIVASCSEGTDIKLWHGKTGN 238

Query: 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
           +LGNVDTNQLKN MAAISPNGRF+AAAAFTADVKVWEI+YSKDG VK V  VMQLKGHKS
Sbjct: 239 ILGNVDTNQLKNTMAAISPNGRFVAAAAFTADVKVWEIIYSKDGSVKEVPKVMQLKGHKS 298

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360
           AVTWLCF  NSEQIITASKDG++R+WNINVRYHLDEDPKTLKV PIPL DS+ ATL YDR
Sbjct: 299 AVTWLCFTSNSEQIITASKDGSIRIWNINVRYHLDEDPKTLKVFPIPLHDSHDATLHYDR 358

Query: 361 LSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
           LSLS DGKILAAT+GSTLQWL VETGKVLDTA+KAH+G+IT +AWAPKTIP G+ Q  VL
Sbjct: 359 LSLSPDGKILAATNGSTLQWLCVETGKVLDTADKAHDGQITWIAWAPKTIPNGDGQAMVL 418

Query: 421 ATSSVDKKVKLWLAPSLESS 440
           AT+SVDKKVKLW APS++S+
Sbjct: 419 ATASVDKKVKLWAAPSVDST 438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453901|ref|XP_002279016.1| PREDICTED: transducin beta-like protein 2 [Vitis vinifera]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/440 (75%), Positives = 383/440 (87%), Gaps = 1/440 (0%)

Query: 1   MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKK 60
           MDPVL   VVS++LGALIA++F  +YF KRRSE++SI K EL+ D   KP KP Q  SKK
Sbjct: 1   MDPVLLAAVVSILLGALIALVFLGNYFLKRRSEVESIFKPELQSDKNPKPAKPPQSFSKK 60

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
           S  K HSH+  DKDQNKRHHPLD+NTLKGHGDSV GLCFS DG+ LATACADGV+RV+KL
Sbjct: 61  SQFKHHSHA-ADKDQNKRHHPLDINTLKGHGDSVNGLCFSPDGRNLATACADGVVRVYKL 119

Query: 121 DDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180
           DDASSKSFKFLRIN+P GG PTAV F D+++S+VVA+  LSGCSL+M+G+E+A + NE K
Sbjct: 120 DDASSKSFKFLRINVPLGGHPTAVTFGDDSSSVVVASQTLSGCSLFMFGDERAKTANETK 179

Query: 181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240
           Q +K P PEIKWE  KVHDKRAILTLFG +A+YG+ADGSTII SCSEGTDI +WHGKTGK
Sbjct: 180 QPAKPPVPEIKWERLKVHDKRAILTLFGTTASYGSADGSTIIVSCSEGTDIMLWHGKTGK 239

Query: 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
            LG+VDTNQLKNNMAA+SPNGRF+AAAAFTADVKVWEIVYSKDG VK V++VMQLKGHKS
Sbjct: 240 NLGHVDTNQLKNNMAAVSPNGRFIAAAAFTADVKVWEIVYSKDGSVKEVSNVMQLKGHKS 299

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360
           AVTWLCF PNSEQIITASKDG++R WNINVRYHLDEDPKTLKV PIPL DS+G+TL YDR
Sbjct: 300 AVTWLCFTPNSEQIITASKDGSIRTWNINVRYHLDEDPKTLKVFPIPLHDSSGSTLLYDR 359

Query: 361 LSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
           LS+S DGKILAATHGSTLQWL  ETGKVLDTA+KAH+G+ITC+AWAP+ +P+G+Q+  VL
Sbjct: 360 LSISPDGKILAATHGSTLQWLCTETGKVLDTADKAHDGDITCIAWAPEHLPIGDQKSLVL 419

Query: 421 ATSSVDKKVKLWLAPSLESS 440
           ATSSVDKKVKLW+AP L +S
Sbjct: 420 ATSSVDKKVKLWVAPPLLTS 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063858|ref|XP_002301292.1| predicted protein [Populus trichocarpa] gi|222843018|gb|EEE80565.1| predicted protein [Populus trichocarpa]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/438 (74%), Positives = 377/438 (86%), Gaps = 1/438 (0%)

Query: 1   MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKK 60
           MD VL I ++S++LG  IA+IFFK+YF KR+SEI SI++  L PD  KKP KP+   S+K
Sbjct: 1   MDQVLPIALISLLLGTAIALIFFKNYFLKRKSEIGSISEPGLHPDLHKKPPKPTHQ-SRK 59

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
            HSKPHSH+  DKD NK+HHPLD+NTLKGHGDSV+GLCFS DG+ LATACADGV+RV KL
Sbjct: 60  PHSKPHSHASSDKDHNKKHHPLDLNTLKGHGDSVSGLCFSYDGRSLATACADGVVRVFKL 119

Query: 121 DDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180
           DDASSKSFKFLRIN+P GG P AVAF+D+A+S+VVA+  LSG SLYM+GEEK  +T++ K
Sbjct: 120 DDASSKSFKFLRINVPAGGHPVAVAFSDDASSVVVASQTLSGSSLYMWGEEKVKATDDSK 179

Query: 181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240
           QQ KLP P+IKWEHHK+H+KRA+LTL G ++TYG+ DGSTI+ASCSEGTDI IWHGKTGK
Sbjct: 180 QQPKLPLPDIKWEHHKIHEKRAVLTLVGTASTYGSGDGSTIVASCSEGTDIKIWHGKTGK 239

Query: 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
           +LGNVDTNQLKNNMA ISPNGRF+AAAAFTADVKVWEIVYSKDG VK V   MQLKGHKS
Sbjct: 240 VLGNVDTNQLKNNMATISPNGRFIAAAAFTADVKVWEIVYSKDGSVKEVPKAMQLKGHKS 299

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360
           AVTWLCF P+SEQIITASKDG++R+WNINVRYHLDEDPKTLKV PIPL DSNGATL YDR
Sbjct: 300 AVTWLCFTPDSEQIITASKDGSIRIWNINVRYHLDEDPKTLKVFPIPLHDSNGATLHYDR 359

Query: 361 LSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
           LSLS DG+ILAATHGS LQWL VETGKVLDTA+ AH G+IT +AWAPK +P G+ +  VL
Sbjct: 360 LSLSPDGRILAATHGSMLQWLCVETGKVLDTADNAHNGDITWIAWAPKPMPAGDGRSFVL 419

Query: 421 ATSSVDKKVKLWLAPSLE 438
           AT+SVDKKVKLW AP L+
Sbjct: 420 ATASVDKKVKLWAAPPLK 437

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568276|ref|XP_003552339.1| PREDICTED: uncharacterized protein LOC100306508 [Glycine max]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/440 (75%), Positives = 381/440 (86%), Gaps = 11/440 (2%)

Query: 1   MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKK 60
           MDP L I  +S++LGA+IA +FF +Y+ KR+SEI+SIA    +P   K P  P +P+SK 
Sbjct: 1   MDPALPIVALSLLLGAIIAFLFFSTYYRKRQSEIQSIADPNPKPLSSKAP--PKKPLSK- 57

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
               PHS    DKDQNKRHHPLD+NTLKGHGD+VTG+CFS DG+ LATACADGV+RV KL
Sbjct: 58  ----PHS---SDKDQNKRHHPLDLNTLKGHGDAVTGICFSPDGRNLATACADGVVRVFKL 110

Query: 121 DDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180
           DDASSKSFKFLRINLP GG PTAVAF+D+A+SIVVA++ LSGCSLYMYGEEK   T+E K
Sbjct: 111 DDASSKSFKFLRINLPAGGHPTAVAFSDDASSIVVASYTLSGCSLYMYGEEKP-KTSEDK 169

Query: 181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240
            Q+KLP PEIKWEHHKVHDK++I+T+FGASATYGTADGSTI+ASCSEGTDI +WHGKTGK
Sbjct: 170 PQTKLPLPEIKWEHHKVHDKKSIITMFGASATYGTADGSTIVASCSEGTDIILWHGKTGK 229

Query: 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
            +G+VDTNQLKNNMA ISPNGRF+AAAAFTADVK+WEIVY+KDG VK V +VMQLKGHKS
Sbjct: 230 SVGHVDTNQLKNNMATISPNGRFIAAAAFTADVKIWEIVYAKDGSVKEVLNVMQLKGHKS 289

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360
           AVTWLCF PNSEQIITASKDG++R+WNINVRYHLDEDPKTLKV  IPL DS+G TL YDR
Sbjct: 290 AVTWLCFMPNSEQIITASKDGSMRLWNINVRYHLDEDPKTLKVFLIPLHDSSGTTLHYDR 349

Query: 361 LSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
           LS+S DGKILAATHGSTLQWL VETGKVLDTAEKAH+ +I+C++WAPK IPMGN+QV VL
Sbjct: 350 LSVSPDGKILAATHGSTLQWLCVETGKVLDTAEKAHDSDISCISWAPKPIPMGNEQVLVL 409

Query: 421 ATSSVDKKVKLWLAPSLESS 440
           AT+S DKKVKLW +PS+ SS
Sbjct: 410 ATASADKKVKLWASPSIPSS 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532101|ref|XP_003534612.1| PREDICTED: transducin beta-like protein 2-like [Glycine max]

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/440 (73%), Positives = 374/440 (85%), Gaps = 5/440 (1%)

Query: 1   MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKK 60
           MDP L I  +S++LGA+IA + F +YF KR+SEI+SIA  +  P+    P K        
Sbjct: 1   MDPALPIVALSLLLGAIIAFLIFNTYFCKRQSEIRSIA--DPNPNSNSNP-KLVSSKPPP 57

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
                  HS  DKDQNKRHHPLD+NTLKGHGD+VTG+CFS DG+ LATACADGV+RV KL
Sbjct: 58  KKPLSKPHS-SDKDQNKRHHPLDLNTLKGHGDAVTGVCFSRDGRNLATACADGVVRVFKL 116

Query: 121 DDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180
           DDASSKSFKFLRINLP GG PTAVAF+D+A+SIVVA++ LSGCSLYMYGEEK   T+E K
Sbjct: 117 DDASSKSFKFLRINLPAGGHPTAVAFSDDASSIVVASYTLSGCSLYMYGEEKP-KTSEDK 175

Query: 181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240
            Q+KLP PEIKWEHHKVHDK++I+T+FGASATYGTADGSTIIASCSEGTDI +WHGKTGK
Sbjct: 176 PQAKLPLPEIKWEHHKVHDKKSIITMFGASATYGTADGSTIIASCSEGTDIILWHGKTGK 235

Query: 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
            +G+VDTNQLKNNMA ISPNGRF+AAAAFTADVK+WEIVY+KDG VK V +VMQLKGHKS
Sbjct: 236 SVGHVDTNQLKNNMATISPNGRFIAAAAFTADVKIWEIVYAKDGSVKEVLNVMQLKGHKS 295

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360
           AVTWLCF PNSEQIITASKDG++R+WNINVRYHLDEDPKTLKV PIPL DS+G TL YDR
Sbjct: 296 AVTWLCFTPNSEQIITASKDGSMRIWNINVRYHLDEDPKTLKVFPIPLHDSSGTTLHYDR 355

Query: 361 LSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
           +S+S DG  LAATHGSTLQWL VETGKVLDTAEKAH+ +I+C++WAPKTIPMGN+QV VL
Sbjct: 356 MSVSPDGNFLAATHGSTLQWLCVETGKVLDTAEKAHDSDISCISWAPKTIPMGNEQVLVL 415

Query: 421 ATSSVDKKVKLWLAPSLESS 440
           AT+S DKKVKLW +PS+ +S
Sbjct: 416 ATASADKKVKLWASPSIPAS 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089146|emb|CBI38849.3| unnamed protein product [Vitis vinifera]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/412 (75%), Positives = 359/412 (87%), Gaps = 1/412 (0%)

Query: 1   MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKK 60
           MDPVL   VVS++LGALIA++F  +YF KRRSE++SI K EL+ D   KP KP Q  SKK
Sbjct: 1   MDPVLLAAVVSILLGALIALVFLGNYFLKRRSEVESIFKPELQSDKNPKPAKPPQSFSKK 60

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
           S  K HSH+  DKDQNKRHHPLD+NTLKGHGDSV GLCFS DG+ LATACADGV+RV+KL
Sbjct: 61  SQFKHHSHA-ADKDQNKRHHPLDINTLKGHGDSVNGLCFSPDGRNLATACADGVVRVYKL 119

Query: 121 DDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180
           DDASSKSFKFLRIN+P GG PTAV F D+++S+VVA+  LSGCSL+M+G+E+A + NE K
Sbjct: 120 DDASSKSFKFLRINVPLGGHPTAVTFGDDSSSVVVASQTLSGCSLFMFGDERAKTANETK 179

Query: 181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240
           Q +K P PEIKWE  KVHDKRAILTLFG +A+YG+ADGSTII SCSEGTDI +WHGKTGK
Sbjct: 180 QPAKPPVPEIKWERLKVHDKRAILTLFGTTASYGSADGSTIIVSCSEGTDIMLWHGKTGK 239

Query: 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
            LG+VDTNQLKNNMAA+SPNGRF+AAAAFTADVKVWEIVYSKDG VK V++VMQLKGHKS
Sbjct: 240 NLGHVDTNQLKNNMAAVSPNGRFIAAAAFTADVKVWEIVYSKDGSVKEVSNVMQLKGHKS 299

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360
           AVTWLCF PNSEQIITASKDG++R WNINVRYHLDEDPKTLKV PIPL DS+G+TL YDR
Sbjct: 300 AVTWLCFTPNSEQIITASKDGSIRTWNINVRYHLDEDPKTLKVFPIPLHDSSGSTLLYDR 359

Query: 361 LSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPM 412
           LS+S DGKILAATHGSTLQWL  ETGKVLDTA+KAH+G+ITC+AWAP+ +P+
Sbjct: 360 LSISPDGKILAATHGSTLQWLCTETGKVLDTADKAHDGDITCIAWAPEHLPI 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432249|ref|XP_004133912.1| PREDICTED: transducin beta-like protein 2-like [Cucumis sativus] gi|449528295|ref|XP_004171140.1| PREDICTED: transducin beta-like protein 2-like [Cucumis sativus]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/437 (74%), Positives = 369/437 (84%), Gaps = 4/437 (0%)

Query: 1   MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKK 60
           MD  L I VVSV+LGALIA+IFF SYF KRRSE+++I+  EL P   KK  KPSQ     
Sbjct: 1   MDFALLIPVVSVILGALIAVIFFGSYFRKRRSEVQTISHPEL-PSDPKKHQKPSQTKKSH 59

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
           S          +KDQNK+HHPLD+NTLKGHGDSVTGLCFSSDG  LATACADGVIRV KL
Sbjct: 60  SKP---HSHSSEKDQNKKHHPLDLNTLKGHGDSVTGLCFSSDGSNLATACADGVIRVFKL 116

Query: 121 DDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180
           DDASSKSFKFLRINLP GG PTAV F D+ATSI+V++  LSG SLYMYGEEKA  + E K
Sbjct: 117 DDASSKSFKFLRINLPAGGHPTAVMFGDDATSIIVSSQGLSGSSLYMYGEEKAKPSGETK 176

Query: 181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240
           QQ+KLP PEIKWE HKVHDK++++TL GA+A+YG+ADGSTI+ASCSEGTDI +WH KTGK
Sbjct: 177 QQAKLPLPEIKWEQHKVHDKKSVITLVGATASYGSADGSTIVASCSEGTDIRLWHAKTGK 236

Query: 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
           L+G+VDTNQLKN MA +SPNGRF+AAAAFTADVKVWE+VYSKDG VK V  VMQLKGHKS
Sbjct: 237 LVGDVDTNQLKNTMATLSPNGRFIAAAAFTADVKVWEVVYSKDGSVKEVLRVMQLKGHKS 296

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360
           AVTWLCF PNSEQIITASKDG++R+WNINVRYHLDEDPKTLKV PIPL DS GAT+ YD 
Sbjct: 297 AVTWLCFTPNSEQIITASKDGSMRIWNINVRYHLDEDPKTLKVFPIPLHDSKGATVHYDH 356

Query: 361 LSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
           L++S DGKILAATHGSTLQWL VETGKVLDTAEKAH+G+IT ++WAPK IP G ++V VL
Sbjct: 357 LNISPDGKILAATHGSTLQWLCVETGKVLDTAEKAHDGDITWISWAPKPIPSGVKKVMVL 416

Query: 421 ATSSVDKKVKLWLAPSL 437
           AT+SVDKKVKLW APSL
Sbjct: 417 ATASVDKKVKLWAAPSL 433

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411222|ref|NP_567150.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|15912317|gb|AAL08292.1| AT4g00090/F6N15_8 [Arabidopsis thaliana] gi|23506101|gb|AAN28910.1| At4g00090/F6N15_8 [Arabidopsis thaliana] gi|332656422|gb|AEE81822.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/439 (72%), Positives = 364/439 (82%), Gaps = 10/439 (2%)

Query: 1   MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKK 60
           MD VL + + SV+LGALIA++FF SYF KR SE++S+AK E  P    +  K + P  KK
Sbjct: 1   MDSVLVVGIASVILGALIAVLFFGSYFRKRTSEVQSMAKAE--PQDPIRNPKSNHPAPKK 58

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
           +H K  +    DK+QNKRHHPLD+NTLKGHGD+VTGLCFSSDGK LATACADGVIRV KL
Sbjct: 59  NHPKSQA---SDKNQNKRHHPLDLNTLKGHGDAVTGLCFSSDGKSLATACADGVIRVFKL 115

Query: 121 DDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180
           DDASSKSFKFLRINLP GG PTAVAFAD+A+SIVVA H++SG SLYMYGE+K     +  
Sbjct: 116 DDASSKSFKFLRINLPAGGHPTAVAFADDASSIVVACHHMSGSSLYMYGEDK-----QKD 170

Query: 181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240
           QQ KLP P IKW+HH +H+KR++LT+ GA+ATYGTADGS +IASCSEGTDI +WHGKTG+
Sbjct: 171 QQGKLPLPSIKWDHHHIHEKRSVLTISGATATYGTADGSVVIASCSEGTDIVLWHGKTGR 230

Query: 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
            LG+VDTNQLKN+MAA+SPNGRFLAAAAFTADVKVWEIVY KDG VK V+ VMQLKGHKS
Sbjct: 231 NLGHVDTNQLKNHMAAVSPNGRFLAAAAFTADVKVWEIVYQKDGSVKEVSRVMQLKGHKS 290

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360
           AVTWLCF+PNSEQIITASKDG++RVWNINVRYHLDEDPKTLKV PIPL DS G  L YDR
Sbjct: 291 AVTWLCFSPNSEQIITASKDGSIRVWNINVRYHLDEDPKTLKVFPIPLCDSGGNPLHYDR 350

Query: 361 LSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
           LSL  +GKILAA+HGSTLQWL  ETG VLDTAEKAHEG+ITC++WAPK I +G +   VL
Sbjct: 351 LSLCPEGKILAASHGSTLQWLCAETGNVLDTAEKAHEGDITCISWAPKAITVGERHAMVL 410

Query: 421 ATSSVDKKVKLWLAPSLES 439
            TS  DKKVKLW AP  +S
Sbjct: 411 GTSGDDKKVKLWEAPKSQS 429

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814325|ref|XP_002875046.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297320883|gb|EFH51305.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/439 (71%), Positives = 362/439 (82%), Gaps = 10/439 (2%)

Query: 1   MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKK 60
           M+ V+ + + SV+ GALIA++FF +YF KR SE++S+AK E  P    +  K + P  KK
Sbjct: 1   MESVIVVAIASVIFGALIAVLFFGNYFRKRTSEVQSMAKAE--PQDPIRNPKSNHPAPKK 58

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
           +H K  +    DK+QNKRHHPLD+NTLKGHGD+VTGLCFSSDG+ LATACADGVIRV KL
Sbjct: 59  NHPKSQA---SDKNQNKRHHPLDLNTLKGHGDAVTGLCFSSDGRSLATACADGVIRVFKL 115

Query: 121 DDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180
           DDASSKSFKFLRINLP GG PTAV FAD+A+SIVVA H++SG SLYMYGEEK     +  
Sbjct: 116 DDASSKSFKFLRINLPAGGHPTAVTFADDASSIVVACHHMSGSSLYMYGEEK-----QKD 170

Query: 181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240
            Q KLP P IKW+HH +H+KRA+LT+ GA+ATYGTADGS +IASCSEGTDI +WHGKTG+
Sbjct: 171 PQGKLPLPSIKWDHHHIHEKRAVLTISGATATYGTADGSAVIASCSEGTDIILWHGKTGR 230

Query: 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
            LG+VDTNQLKN+MAA+SPNGRFLAAAAFTADVKVWEIVY KDG VK V+ VMQLKGHKS
Sbjct: 231 NLGHVDTNQLKNHMAAVSPNGRFLAAAAFTADVKVWEIVYQKDGSVKEVSRVMQLKGHKS 290

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360
           AVTWLCF+PNSE+IITASKDG++RVWNINVRYHLDEDPKTLKV PIPL DS G  L YDR
Sbjct: 291 AVTWLCFSPNSEKIITASKDGSIRVWNINVRYHLDEDPKTLKVFPIPLCDSGGNMLHYDR 350

Query: 361 LSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
           LSL  +GKILAA+HGSTLQWL  ETG VLDTAEKAHEG+ITC++WAPK I +G +   VL
Sbjct: 351 LSLCPEGKILAASHGSTLQWLCAETGNVLDTAEKAHEGDITCISWAPKAITVGERHAMVL 410

Query: 421 ATSSVDKKVKLWLAPSLES 439
           ATS  DKKVKLW AP  +S
Sbjct: 411 ATSGDDKKVKLWEAPKSQS 429

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127386|ref|XP_002320061.1| predicted protein [Populus trichocarpa] gi|222860834|gb|EEE98376.1| predicted protein [Populus trichocarpa]

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 315/456 (69%), Positives = 363/456 (79%), Gaps = 21/456 (4%)

Query: 1   MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKK 60
           MD VL I ++SV+LG  IA+IFFK+YF KR+SEI SIAK E+ PD  +KP KP+    K 
Sbjct: 1   MDQVLPIALISVLLGTAIALIFFKNYFLKRKSEIGSIAKPEIHPDPLRKPPKPTHQSKKS 60

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
                   +  DKD NK+HHPLD+NTLKGHGDSVTGLCFS DG+ LATACADGV+RV KL
Sbjct: 61  HSH-----ASSDKDHNKKHHPLDLNTLKGHGDSVTGLCFSYDGRSLATACADGVVRVFKL 115

Query: 121 DDASSKSFKF------LRINLPPG----------GPPTAVAFADNATSIVVATHNLSGCS 164
           DDASSKSFK+       +I               G P AVAF+D+A+S+V+A+H LSG S
Sbjct: 116 DDASSKSFKYEPEAFLFQIMFFFFFFFSADSLFVGHPVAVAFSDDASSVVLASHTLSGSS 175

Query: 165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS 224
           LYM+GEEK   +N+ KQQ KLP PEIKWEHHK+H+K+ +LTL G ++TYG  DGSTI+AS
Sbjct: 176 LYMWGEEKVKDSNDSKQQPKLPLPEIKWEHHKIHEKKVVLTLVGTASTYGNGDGSTIVAS 235

Query: 225 CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDG 284
           CSEGTDI IWHGKTGK LG VDTNQLKN MAAISPNGRF+AAAAFTADVKVWEIVYSKDG
Sbjct: 236 CSEGTDIKIWHGKTGKNLGTVDTNQLKNTMAAISPNGRFIAAAAFTADVKVWEIVYSKDG 295

Query: 285 LVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL 344
            VK V  VMQLKGH+SAVTWLCF P+SEQIITASKDG++R+WNINVRYHLDEDPKTLKV 
Sbjct: 296 SVKEVPKVMQLKGHRSAVTWLCFTPDSEQIITASKDGSIRIWNINVRYHLDEDPKTLKVF 355

Query: 345 PIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMA 404
           PIPL DSNG TL YDRLSLS DG+IL ATHGS LQWL VETGKVLDTA++AH+G+IT +A
Sbjct: 356 PIPLHDSNGGTLHYDRLSLSPDGRILVATHGSMLQWLCVETGKVLDTADRAHDGDITWIA 415

Query: 405 WAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLESS 440
           WAPK IP G+ Q S+LAT+SVDKKVKLW AP L S+
Sbjct: 416 WAPKPIPTGDGQTSILATASVDKKVKLWAAPPLRSA 451

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
TAIR|locus:2126926	430	AT4G00090 "AT4G00090" [Arabido	0.975	0.997	0.712	4.2e-166
UNIPROTKB|Q9Y4P3	447	TBL2 "Transducin beta-like pro	0.415	0.409	0.366	3e-34
MGI|MGI:1351652	442	Tbl2 "transducin (beta)-like 2	0.413	0.411	0.345	1.5e-30
DICTYBASE|DDB_G0270746	458	DDB_G0270746 "WD40 repeat-cont	0.434	0.417	0.305	3.9e-24
WB|WBGene00009784	451	F46C5.9 [Caenorhabditis elegan	0.645	0.629	0.279	1e-22
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.45	0.591	0.257	1.7e-10
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.704	0.227	0.237	2.2e-10
DICTYBASE|DDB_G0295761	507	nle1 "putative notchless" [Dic	0.240	0.209	0.278	1.2e-09
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.506	0.513	0.278	1.4e-09
UNIPROTKB|I3LSG8	994	I3LSG8 "Uncharacterized protei	0.468	0.207	0.246	2.1e-09

TAIR|locus:2126926 AT4G00090 "AT4G00090" [Arabidopsis thaliana (taxid:3702)]

 Score = 1616 (573.9 bits), Expect = 4.2e-166, P = 4.2e-166
 Identities = 313/439 (71%), Positives = 357/439 (81%)

Query:     1 MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTXXXXXXXXX 60
             MD VL + + SV+LGALIA++FF SYF KR SE++S+AK E + D  + P          
Sbjct:     1 MDSVLVVGIASVILGALIAVLFFGSYFRKRTSEVQSMAKAEPQ-DPIRNPKSNHPAPKKN 59

Query:    61 XXXXXXXXXXGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
                        DK+QNKRHHPLD+NTLKGHGD+VTGLCFSSDGK LATACADGVIRV KL
Sbjct:    60 HPKSQAS----DKNQNKRHHPLDLNTLKGHGDAVTGLCFSSDGKSLATACADGVIRVFKL 115

Query:   121 DDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180
             DDASSKSFKFLRINLP GG PTAVAFAD+A+SIVVA H++SG SLYMYGE+K     +  
Sbjct:   116 DDASSKSFKFLRINLPAGGHPTAVAFADDASSIVVACHHMSGSSLYMYGEDK-----QKD 170

Query:   181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240
             QQ KLP P IKW+HH +H+KR++LT+ GA+ATYGTADGS +IASCSEGTDI +WHGKTG+
Sbjct:   171 QQGKLPLPSIKWDHHHIHEKRSVLTISGATATYGTADGSVVIASCSEGTDIVLWHGKTGR 230

Query:   241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
              LG+VDTNQLKN+MAA+SPNGRFLAAAAFTADVKVWEIVY KDG VK V+ VMQLKGHKS
Sbjct:   231 NLGHVDTNQLKNHMAAVSPNGRFLAAAAFTADVKVWEIVYQKDGSVKEVSRVMQLKGHKS 290

Query:   301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360
             AVTWLCF+PNSEQIITASKDG++RVWNINVRYHLDEDPKTLKV PIPL DS G  L YDR
Sbjct:   291 AVTWLCFSPNSEQIITASKDGSIRVWNINVRYHLDEDPKTLKVFPIPLCDSGGNPLHYDR 350

Query:   361 LSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
             LSL  +GKILAA+HGSTLQWL  ETG VLDTAEKAHEG+ITC++WAPK I +G +   VL
Sbjct:   351 LSLCPEGKILAASHGSTLQWLCAETGNVLDTAEKAHEGDITCISWAPKAITVGERHAMVL 410

Query:   421 ATSSVDKKVKLWLAPSLES 439
              TS  DKKVKLW AP  +S
Sbjct:   411 GTSGDDKKVKLWEAPKSQS 429

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q9Y4P3 TBL2 "Transducin beta-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 3.0e-34, Sum P(2) = 3.0e-34
 Identities = 70/191 (36%), Positives = 109/191 (57%)

Query:   214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADV 273
             G A+    I + S  T + IW  K G++L  ++TNQ+ N  AA+SP GRF+A+  FT DV
Sbjct:   195 GIANTGKFIMTASSDTTVLIWSLK-GQVLSTINTNQMNNTHAAVSPCGRFVASCGFTPDV 253

Query:   274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333
             KVWE+ + K G  + V    +LKGH +AV    F+ +S ++ + SKDGT ++W+ +V Y 
Sbjct:   254 KVWEVCFGKKGEFQEVVRAFELKGHSAAVHSFAFSNDSRRMASVSKDGTWKLWDTDVEYK 313

Query:   334 LDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE 393
               +DP  LK       ++ GA     RL+LS + ++LA   GS++   +   G+  +  E
Sbjct:   314 KKQDPYLLKTGRFE--EAAGAAPC--RLALSPNAQVLALASGSSIHLYNTRRGEKEECFE 369

Query:   394 KAHEGEITCMA 404
             + H GE  C+A
Sbjct:   370 RVH-GE--CIA 377

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1351652 Tbl2 "transducin (beta)-like 2" [Mus musculus (taxid:10090)]

 Score = 286 (105.7 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
 Identities = 66/191 (34%), Positives = 104/191 (54%)

Query:   214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADV 273
             G AD    I + S  T + IW+ K G++L  ++TNQ+ N+ A ISP  RF+ +  FT DV
Sbjct:   191 GIADTGKFIMTASSDTTVLIWNLK-GQVLSTINTNQMNNSHAVISPCSRFVGSCGFTPDV 249

Query:   274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333
             KVWE+ + K G  + V    +LKGH ++V    F+ +S ++ + SKDGT ++W+ +V Y 
Sbjct:   250 KVWEVCFGKKGEFQEVLRAFELKGHSASVHSFAFSNDSRRMASVSKDGTWKLWDTDVEYK 309

Query:   334 LDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE 393
               +DP  L+           +T+   RL+LS D  +LA   G+ +   +   G+  +  E
Sbjct:   310 KQQDPYLLRTGRF----EEASTMPC-RLALSPDTHVLALATGTNIHLFNTRRGEKEEYFE 364

Query:   394 KAHEGEITCMA 404
               H GE  C+A
Sbjct:   365 CVH-GE--CIA 372

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0270746 DDB_G0270746 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 267 (99.0 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 63/206 (30%), Positives = 120/206 (58%)

Query:   219 STIIASCS-EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWE 277
             S  I +CS + T + I++ K G+++  ++  Q+KN MAA++  GRF A A+F+++VK++E
Sbjct:   251 SPYILTCSGDDTILKIFNLK-GQIIQTINNGQIKNYMAAMTQCGRFFAIASFSSEVKIYE 309

Query:   278 IVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDED 337
              +  KDG V     VM L G+K+ +  + F+ +  +IIT+SKDG++R+WN+NV Y L+ D
Sbjct:   310 CIKKKDGTVNECKRVMSLTGYKTCIYSIDFSKDGLKIITSSKDGSIRLWNLNVNYKLEVD 369

Query:   338 PKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGST--LQWLSVETGKVLDTAEKA 395
             P+    +   +    G     + +S+S D  + A  + +T  + + ++  G ++D+    
Sbjct:   370 PECTYSITSEI----GVI---EIISISPDCTLFAGVNQTTNVIGFFNLSNGNLIDSIHLG 422

Query:   396 HE-GEITCMAWAPKT---IPMGNQQV 417
             +   ++  +AW+P +   I  GN ++
Sbjct:   423 NNHAKVNSIAWSPDSKYLISGGNDKL 448

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00009784 F46C5.9 [Caenorhabditis elegans (taxid:6239)]

 Score = 281 (104.0 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 86/308 (27%), Positives = 144/308 (46%)

Query:    80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG 139
             HP +V+ LKGH   VT + F+SDGK   +   D  + +  + D  +K  K +R  +    
Sbjct:    80 HPWNVSVLKGHKKEVTDVAFASDGKKFVSISGDRSVILWDVRDFENKEHKCIRQTVEYD- 138

Query:   140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVH- 198
              PT V FA +  S+V +    +   +Y     K +   EG       G      HH VH 
Sbjct:   139 TPTRVVFAPDCKSVVFSVKRENKICVY-----KLVKKTEGS------G-----SHHFVHI 182

Query:   199 DKRAILTLFGASA-TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI 257
             D      +        G A  +  + S +    I ++  + G+LL ++D          +
Sbjct:   183 DNLEFERVHQVDIQNIGIAGNAKYLMSAALDNKICLYDLR-GQLLQSIDAKVSSLYDCRL 241

Query:   258 SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317
             SP+GRF+  + FT DV V+E ++++DG  ++   V  L GH+S V    F  +S + +T 
Sbjct:   242 SPDGRFIIVSGFTPDVFVFEPIFTRDGTFQSAKKVFSLSGHQSGVLAAAFNNSSTRAVTV 301

Query:   318 SKDGTLRVWNINVRYHLDEDPKTLKVLP-IPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
             S+DG  R+++ ++RY   +D K L+     PL   + AT ++ RL +S  G   A +  +
Sbjct:   302 SRDGKWRIFDTDIRYEAGQDSKILREGSWAPL---HAATSEHVRLEMSPSGDSFAVSFKT 358

Query:   377 TLQWLSVE 384
              L+  + E
Sbjct:   359 DLKVFASE 366

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 135 (52.6 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 57/221 (25%), Positives = 92/221 (41%)

Query:   217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
             DG  + AS S    I IW    GK    ++ ++   +  A S + + + +A+    +K+W
Sbjct:    57 DGKWL-ASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIKIW 115

Query:   277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
             ++   K  +VK       LKGHK  V  + F P S  I++ S D  +R+W++N      E
Sbjct:   116 DVESGK--MVKT------LKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNT----GE 163

Query:   337 DPKTLKVLPIPLLDSNGATLQYDR---LSLSSDG--KILAATHGSTLQWLSVETGKVLDT 391
               K +     P+    G     D    +S S DG  +I   T G  L  +S E GK +  
Sbjct:   164 CTKMISAHSDPV---TGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSF 220

Query:   392 AEKAHEGEITCMAWAPKTIPMG--NQQVSVLATSSVDKKVK 430
              + +  G+         T+ +   N     L T +  K  K
Sbjct:   221 VKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTYTGHKNEK 261

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 182 (69.1 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 83/349 (23%), Positives = 157/349 (44%)

Query:    84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK---SFK-----FLRINL 135
             + TL GH  +V  L FS DGK LA+   D  I +   D A+ +   +F+        +  
Sbjct:   785 LQTLDGHSGTVESLAFSPDGKLLASGSYDNTIDLW--DSATGELLQTFEGHPHSIWSVAF 842

Query:   136 PPGGPPTAVAFADNATSIV-VATHNLSGCSLYMYGEE-KAISTN-EGK--QQSKLPGPEI 190
              P G   A A  D+   I  +AT  L   +L  + +  ++++ + +GK    S L     
Sbjct:   843 APDGKELASASDDSTIKIWDLATGELQQ-TLDSHSQSVRSVAFSPDGKLLASSSLDSTIK 901

Query:   191 KWEHHKVHDKRAILTLFG-ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ 249
              W       ++++    G   +   + DG  + AS SE   + +W+  TG+LL  ++ + 
Sbjct:   902 VWNPATGELQQSLEGRSGWVKSVAFSPDGKKL-ASGSEKNTVKLWNPATGELLQTLEGHS 960

Query:   250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP 309
                   A SP+G+ LA+++    +K+W    S  G ++        KGH   +  + F+P
Sbjct:   961 QSVRSVAFSPDGKQLASSSSDTTIKLWN---STTGELQQT-----FKGHDLWIRAVAFSP 1012

Query:   310 NSEQIITASKDGTLRVWNI---NVRYHLDEDPKTLKVLPIPLLDSNGATLQYD---RLSL 363
             + + +++ S D T+++W++    ++  L++  +++  +     D   A+   D   +L  
Sbjct:  1013 DGKHLVSGSDDNTIKLWDLATSELQQSLEDHSRSVHAVAFSPDDKQLASSSLDSTIKLWD 1072

Query:   364 SSDGKILAATHGSTLQWLSVE---TGKVLDTAEKAHEGEITCMAWAPKT 409
             S+ G++     G +    SV     GK+L  A  +++G  T   W P T
Sbjct:  1073 SATGELQRTLEGHSQGVRSVTFSPDGKLL--ASNSYDG--TIKLWNPLT 1117

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0295761 nle1 "putative notchless" [Dictyostelium discoideum (taxid:44689)]

 Score = 147 (56.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 32/115 (27%), Positives = 63/115 (54%)

Query:   218 GSTIIASCSEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
             G  I+ S S+   + +W+    K  +  +  +Q   N+ + SP+GR+ A+A+F   +K+W
Sbjct:   362 GMEILISGSDDFTVIMWNPSVTKTSISRLTGHQQLINLVSFSPDGRYFASASFDKSIKLW 421

Query:   277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR 331
                   DG  ++   +   +GH  AV  +C++ +S  +++ SKD TL++W+I  +
Sbjct:   422 ------DG--QSGKFLGNFRGHVGAVYQVCWSSDSRYLVSGSKDSTLKIWDIKTK 468

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 70/251 (27%), Positives = 113/251 (45%)

Query:    86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
             TL+GH  SV  + FS +G+ LA+  +D  I   KL +++S S K             +VA
Sbjct:    78 TLEGHSSSVQSVAFSPNGQLLASGSSDTTI---KLWNSASDSLKHTMEG--HSDRVESVA 132

Query:   146 FADNAT----SIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIK-WEHHKVHDK 200
             F+ N      +I    H + G S ++     A S +     S      IK W+      K
Sbjct:   133 FSPNGQLWNPAIGSLKHTIEGHSDWVLSV--AFSPDGQLLASGSAEKTIKLWDSATCGLK 190

Query:   201 RAILTLFGAS----ATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAA 256
                 TL G S        + DG  ++AS S    I +W   +G L   ++ +  K    A
Sbjct:   191 H---TLGGHSNWVLPLVFSPDGR-LLASGSNDATIKLWDPPSGSLKHTLEGHSNKIESLA 246

Query:   257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
              SPNG+ LA+ +  A +K+W+   +  G  +       LKGH   V  + F+P+S+ + +
Sbjct:   247 FSPNGQLLASGSSDATIKLWD---TATGSFRHT-----LKGHSDMVLSVVFSPDSQLLES 298

Query:   317 ASKDGTLRVWN 327
              S D T+++W+
Sbjct:   299 GSGDNTIKLWD 309

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|I3LSG8 I3LSG8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 153 (58.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
 Identities = 57/231 (24%), Positives = 106/231 (45%)

Query:   215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD-- 272
             +AD    IA+CS    + IW+  TG+L+ + D +  + N    + N   L  A  ++D  
Sbjct:   402 SAD-DRFIATCSVDKKVKIWNSVTGELVQSYDEHSEQVNCCHFTNNSNHLLLATGSSDYF 460

Query:   273 VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY 332
             +K+W++        K   + M   GH ++V+   F+P+ + + + S DGTL++W++    
Sbjct:   461 LKLWDLNQ------KECRNTMF--GHTNSVSHCRFSPDDKLLASCSADGTLKLWDVKSA- 511

Query:   333 HLDEDPKTLKVLPIPLLDSNGATLQYDRL----SLSSDGKILAATHGSTLQWLSVETGKV 388
                 + K++ V     L+S  +    + +    S S+DG  L     + +   ++ TG +
Sbjct:   512 ---NERKSINVKQF-FLNSEESQEDMEVMVKCCSWSADGASLVVAAKNKVLLFNIHTGGL 567

Query:   389 LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK-LWLAPSLE 438
             L      H   I    ++P      +  V  L+   V+K+ K +WL  SLE
Sbjct:   568 LAEIHTGHHSTIQYCDFSPSN----HLAVVALSQYCVEKRGKFIWLPGSLE 614

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026345001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (439 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00010426001	SubName- Full=Chromosome undetermined scaffold_261, whole genome shotgun sequence; Flags- Fragm [...] (130 aa)			•						0.490
	GSVIVG00003105001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (328 aa)			•						0.487
	GSVIVG00027473001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (339 aa)			•						0.484
	GSVIVG00025117001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (350 aa)			•						0.484
	GSVIVG00007421001	SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (239 aa)			•						0.484
	GSVIVG00003115001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (352 aa)			•						0.480
	GSVIVG00001478001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (379 aa)			•						0.479
	GSVIVG00036790001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (310 aa)			•						0.477
	GSVIVG00017915001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa)			•						0.475
	GSVIVG00015929001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (340 aa)			•						0.469

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	440
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-08
smart00320	40	smart00320, WD40, WD40 repeats	6e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  116 bits (292), Expect = 2e-29
 Identities = 89/354 (25%), Positives = 146/354 (41%), Gaps = 72/354 (20%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
             TLKGH   VT + FS DGK LAT   DG I+V  L+         LR      GP   
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRD 56

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDK 200
           VA + + T +                 +K I       G+    L G          H  
Sbjct: 57  VAASADGTYLASG------------SSDKTIRLWDLETGECVRTLTG----------HTS 94

Query: 201 RAILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP 259
             + ++ F        +    I++S S    I +W  +TGK L  +  +    N  A SP
Sbjct: 95  -YVSSVAF--------SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145

Query: 260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319
           +G F+A+++    +K+W++   K         V  L GH   V  + F+P+ E+++++S 
Sbjct: 146 DGTFVASSSQDGTIKLWDLRTGK--------CVATLTGHTGEVNSVAFSPDGEKLLSSSS 197

Query: 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTL 378
           DGT+++W+++         K L  L       N        ++ S DG +LA  +   T+
Sbjct: 198 DGTIKLWDLS-------TGKCLGTLRGHENGVNS-------VAFSPDGYLLASGSEDGTI 243

Query: 379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           +   + TG+ + T    H   +T +AW+P            LA+ S D  +++W
Sbjct: 244 RVWDLRTGECVQTL-SGHTNSVTSLAWSPDG--------KRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 82.1 bits (201), Expect = 7e-17
 Identities = 81/410 (19%), Positives = 149/410 (36%), Gaps = 69/410 (16%)

Query: 60  KSHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK 119
            S            D       L    L+GH DS+T + FS DG+ L +  +DG I++  
Sbjct: 34  GSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWD 93

Query: 120 LDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEG 179
           LD+                   + +A +    + ++   +    ++ ++       +  G
Sbjct: 94  LDNGEKLIKSLE---GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW-----DLSTPG 145

Query: 180 KQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA----------------------- 216
           K    L G         +        L   S+  GT                        
Sbjct: 146 KLIRTLEGHS--ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Query: 217 -----DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA 271
                DG  +IAS S    I +W   TGKLL +  +    + +++ SP+G  LA+ +   
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG 263

Query: 272 DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR 331
            +++W++  S        + +  L GH S+V  + F+P+ + + + S DGT+R+W++   
Sbjct: 264 TIRLWDLRSSS-------SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE-- 314

Query: 332 YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS--TLQWLSVETGKVL 389
                         +  L   G       LS S DG +L +      T++   + TGK L
Sbjct: 315 ----------TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364

Query: 390 DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439
                     +  ++++P           V+++ S D  V+LW   +   
Sbjct: 365 --KTLEGHSNVLSVSFSPDGR--------VVSSGSTDGTVRLWDLSTGSL 404

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 40/244 (16%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
           V TL GH   V+ + FS DG+ L+++  D  I+V  ++     + K L           +
Sbjct: 86  VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TGKCLTTLRGHTDWVNS 140

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           VAF+ + T +  ++ +         G  K      GK  + L G          H     
Sbjct: 141 VAFSPDGTFVASSSQD---------GTIKLWDLRTGKCVATLTG----------HTG--- 178

Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
                 ++   + DG  +++S S+GT I +W   TGK LG +  ++   N  A SP+G  
Sbjct: 179 ----EVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233

Query: 264 LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323
           LA+ +    ++VW+        ++    V  L GH ++VT L ++P+ +++ + S DGT+
Sbjct: 234 LASGSEDGTIRVWD--------LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285

Query: 324 RVWN 327
           R+W+
Sbjct: 286 RIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 56/244 (22%), Positives = 107/244 (43%), Gaps = 38/244 (15%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
           TL GH DSV    FS DG  LA+  +DG IR+  L      S   LR          +VA
Sbjct: 237 TLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRS----SSSLLRTLSGHSSSVLSVA 291

Query: 146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILT 205
           F+ +   +   + +    ++ ++                L   ++         +  + +
Sbjct: 292 FSPDGKLLASGSSD---GTVRLW---------------DLETGKLLSSLTLKGHEGPVSS 333

Query: 206 LFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLA 265
           L  +       DGS +++  S+   I +W  +TGK L  ++ +    +++  SP+GR ++
Sbjct: 334 LSFSP------DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS-FSPDGRVVS 386

Query: 266 AAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325
           + +    V++W++           + +  L GH S VT L F+P+ + + + S D T+R+
Sbjct: 387 SGSTDGTVRLWDL--------STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438

Query: 326 WNIN 329
           W++ 
Sbjct: 439 WDLK 442

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
             +  LKGH   VT + F+P+ + + + S DGT+++W+
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
             +  LKGH   VT + F+P+   + + S DGT+RVW+
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK 119
           + TLKGH   VT + FS DGK LA+   DG I++  
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           + TLKGH   VT + FS DG  LA+   DG +RV
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 34/228 (14%)

Query: 219 STIIASCSEGTDISIWHGKTGKLLGNV---DTNQLKNNMAAISPNGRFLAAAAFTADVKV 275
             ++ S S    I +W    G+ L        +   + +A  SP+G  +  A+ + D  V
Sbjct: 77  GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136

Query: 276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHL 334
                S  G       +  L+GH  +VT L F+P+ + + + S  DGT+++W++      
Sbjct: 137 KLWDLSTPG-----KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL------ 185

Query: 335 DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS--TLQWLSVETGKVLDTA 392
               K L  L        G T     L+ S DG +L A+  S  T++   + TGK+L + 
Sbjct: 186 -RTGKPLSTL-------AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237

Query: 393 EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLESS 440
              H       +++P          S+LA+ S D  ++LW   S  S 
Sbjct: 238 LSGHSDS-VVSSFSPDG--------SLLASGSSDGTIRLWDLRSSSSL 276

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 30/203 (14%)

Query: 76  NKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL 135
           + R     + TL GH  SV  + FS DGK LA+  +DG +R+    D  +          
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW---DLETGKLLSSLTLK 325

Query: 136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
              GP ++++F+ + + +V    +     L+     K + T EG          + +   
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL----SVSFS-- 379

Query: 196 KVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA 255
                                    +++S S    + +W   TG LL N+D +  +    
Sbjct: 380 ---------------------PDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL 418

Query: 256 AISPNGRFLAAAAFTADVKVWEI 278
             SP+G+ LA+ +    +++W++
Sbjct: 419 DFSPDGKSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 8/39 (20%)

Query: 394 KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           K H G +T +A++P          ++LA+ S D  V++W
Sbjct: 8   KGHTGPVTSVAFSPDG--------NLLASGSDDGTVRVW 38

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	440
KOG2096	420	consensus WD40 repeat protein [General function pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.98
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.98
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.98
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG2055	514	consensus WD40 repeat protein [General function pr	99.97
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG0649	325	consensus WD40 repeat protein [General function pr	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.85
KOG1273	405	consensus WD40 repeat protein [General function pr	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG1334	559	consensus WD40 repeat protein [General function pr	99.83
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.83
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.83
KOG4227	609	consensus WD40 repeat protein [General function pr	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.81
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.81
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG2321	703	consensus WD40 repeat protein [General function pr	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.8
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.76
KOG1963	792	consensus WD40 repeat protein [General function pr	99.76
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.75
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG1188	376	consensus WD40 repeat protein [General function pr	99.73
PRK01742	429	tolB translocation protein TolB; Provisional	99.73
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.72
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.72
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.69
KOG2139	445	consensus WD40 repeat protein [General function pr	99.68
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.68
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.67
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
PRK02889	427	tolB translocation protein TolB; Provisional	99.65
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.64
KOG4227	609	consensus WD40 repeat protein [General function pr	99.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.63
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.63
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.63
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.63
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.62
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
KOG1310	758	consensus WD40 repeat protein [General function pr	99.6
PRK05137	435	tolB translocation protein TolB; Provisional	99.6
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.59
PRK04922	433	tolB translocation protein TolB; Provisional	99.57
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.57
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.57
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.55
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.54
KOG2314	698	consensus Translation initiation factor 3, subunit	99.53
PRK00178	430	tolB translocation protein TolB; Provisional	99.52
PRK04792	448	tolB translocation protein TolB; Provisional	99.52
PRK01029	428	tolB translocation protein TolB; Provisional	99.5
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.49
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.48
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.48
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.47
KOG2321	703	consensus WD40 repeat protein [General function pr	99.47
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.47
KOG2315	566	consensus Predicted translation initiation factor	99.45
KOG4547	541	consensus WD40 repeat-containing protein [General	99.45
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.43
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.42
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
KOG2139	445	consensus WD40 repeat protein [General function pr	99.41
KOG4547	541	consensus WD40 repeat-containing protein [General	99.38
PRK00178	430	tolB translocation protein TolB; Provisional	99.38
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.37
KOG1334	559	consensus WD40 repeat protein [General function pr	99.36
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.36
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.36
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.35
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.35
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.35
COG4946	668	Uncharacterized protein related to the periplasmic	99.33
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.28
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.26
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.25
KOG2315	566	consensus Predicted translation initiation factor	99.22
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.22
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.22
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.21
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.21
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.19
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.18
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.17
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.17
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.14
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.13
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.12
PRK04043	419	tolB translocation protein TolB; Provisional	99.12
COG4946	668	Uncharacterized protein related to the periplasmic	99.12
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.11
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.09
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.03
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.0
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.0
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.99
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.99
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.98
PRK04043	419	tolB translocation protein TolB; Provisional	98.97
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.92
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.92
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.91
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.9
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.88
KOG2695	425	consensus WD40 repeat protein [General function pr	98.86
KOG2314	698	consensus Translation initiation factor 3, subunit	98.86
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.86
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.85
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.82
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.82
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.8
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.79
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.78
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.73
KOG2695	425	consensus WD40 repeat protein [General function pr	98.7
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.7
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.68
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.65
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.62
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.61
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.61
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.55
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.54
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.52
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.52
PRK02888	635	nitrous-oxide reductase; Validated	98.49
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.47
PRK02888	635	nitrous-oxide reductase; Validated	98.46
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.44
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.37
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.27
KOG3621	726	consensus WD40 repeat-containing protein [General	98.25
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.24
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.21
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.21
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.2
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.19
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.17
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.16
KOG3621	726	consensus WD40 repeat-containing protein [General	98.14
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.1
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.09
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.07
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.06
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.04
PRK13616	591	lipoprotein LpqB; Provisional	98.02
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.01
COG3391	381	Uncharacterized conserved protein [Function unknow	98.01
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.97
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.93
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.82
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.82
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.82
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.78
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.77
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.74
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.69
PRK13616	591	lipoprotein LpqB; Provisional	97.66
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.64
COG3391	381	Uncharacterized conserved protein [Function unknow	97.64
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.61
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.61
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.6
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.53
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.53
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.51
KOG2395	644	consensus Protein involved in vacuole import and d	97.49
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.48
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.48
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.46
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.44
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.37
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.37
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.35
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.33
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.27
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.23
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.2
KOG2444	238	consensus WD40 repeat protein [General function pr	97.19
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.15
KOG2444	238	consensus WD40 repeat protein [General function pr	97.06
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.99
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.91
PHA02713	557	hypothetical protein; Provisional	96.85
KOG2395	644	consensus Protein involved in vacuole import and d	96.84
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.82
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.75
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.73
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.71
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.66
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.64
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.63
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.62
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.6
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.55
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.52
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.5
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.49
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.46
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.45
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.45
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.4
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.36
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.3
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.24
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.24
PHA02790	480	Kelch-like protein; Provisional	96.22
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.2
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.02
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.98
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.95
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.85
PHA02713	557	hypothetical protein; Provisional	95.73
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.67
PHA03098	534	kelch-like protein; Provisional	95.67
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.56
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.49
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.42
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.4
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.35
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.34
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.33
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	95.22
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.16
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.11
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.9
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.89
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.74
COG5167	776	VID27 Protein involved in vacuole import and degra	94.5
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.26
PRK10115	686	protease 2; Provisional	94.21
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.15
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.1
PHA03098	534	kelch-like protein; Provisional	94.08
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.97
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	93.93
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.86
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.75
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.74
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.73
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.63
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.6
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.43
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.34
KOG2247	615	consensus WD40 repeat-containing protein [General	93.33
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.85
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.78
PRK10115	686	protease 2; Provisional	92.73
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	92.71
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.15
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.83
PRK13684	334	Ycf48-like protein; Provisional	91.8
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	91.66
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.53
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.52
COG5276	370	Uncharacterized conserved protein [Function unknow	91.44
PRK13684	334	Ycf48-like protein; Provisional	91.19
PHA02790	480	Kelch-like protein; Provisional	91.08
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	91.08
KOG2247	615	consensus WD40 repeat-containing protein [General	91.02
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.68
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	90.31
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.98
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.7
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.55
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.1
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.84
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	88.71
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	88.54
COG4590	733	ABC-type uncharacterized transport system, permeas	88.54
PLN00033	398	photosystem II stability/assembly factor; Provisio	88.28
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.25
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.91
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.84
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.23
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.99
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.79
KOG0783	1267	consensus Uncharacterized conserved protein, conta	86.75
COG5167	776	VID27 Protein involved in vacuole import and degra	86.44
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.4
KOG2109	788	consensus WD40 repeat protein [General function pr	86.21
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	85.7
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.3
COG1770	682	PtrB Protease II [Amino acid transport and metabol	85.19
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	84.51
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	84.27
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	83.55
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	83.18
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	83.14
COG4590	733	ABC-type uncharacterized transport system, permeas	82.1
PRK13613	599	lipoprotein LpqB; Provisional	82.01
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	81.6
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	81.44
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	80.04

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.3e-51  Score=321.32  Aligned_cols=397  Identities=34%  Similarity=0.515  Sum_probs=321.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHhccccccchhhcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccC
Q 013578            1 MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKKSHSKPHSHSHGDKDQNKRHH   80 (440)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (440)
                      ||.++++.++++++|+++++.++..|..|+..+-.+.+...+. .+...+. +..+..+.+.++   ..........+.+
T Consensus         1 mdsv~l~~l~~~l~g~~~a~g~~~~y~~k~~~~~~q~a~~~p~-D~v~~~~-s~~p~kkk~hqr---~~~~k~~q~~f~H   75 (420)
T KOG2096|consen    1 IDSVSLPILIGGLVGFVTVMGVAIIYVAKKEQQGEQEAVDVPM-DEVTETI-SEEPVKKKKHQR---NDQWKAKQPTFVH   75 (420)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhheeccCChhhhhhccCCC-CcccCcc-ccCCcchhcccc---hhhhcccCCCccc
Confidence            7889999999999999999999999987765554433322221 1111111 111222233333   2334455667888


Q ss_pred             ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      +..+.+|+||.+.|++++|+.||++|||++.|++||||++.+......++++...+.+ ..+.+.|.||.+.+++.... 
T Consensus        76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~~~-  153 (420)
T KOG2096|consen   76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSVKR-  153 (420)
T ss_pred             chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEEcc-
Confidence            8999999999999999999999999999999999999999987776666777666664 78999999999999988875 


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeeccccc---ccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKV---HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK  237 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~  237 (440)
                       +..+++|...+...       +..+.+...|+.+..   |....+..        ...++..++++++.|..|.+|+++
T Consensus       154 -g~~l~vyk~~K~~d-------G~~~~~~v~~D~~~f~~kh~v~~i~i--------GiA~~~k~imsas~dt~i~lw~lk  217 (420)
T KOG2096|consen  154 -GNKLCVYKLVKKTD-------GSGSHHFVHIDNLEFERKHQVDIINI--------GIAGNAKYIMSASLDTKICLWDLK  217 (420)
T ss_pred             -CCEEEEEEeeeccc-------CCCCcccccccccccchhcccceEEE--------eecCCceEEEEecCCCcEEEEecC
Confidence             56777776554321       333344455664333   33323321        134556699999999999999999


Q ss_pred             CCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578          238 TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  317 (440)
                       |+.+..+...+......++||+|+++++++....|++|.+-..+++.+++...+..++||++.|..++|+|+.+.+++.
T Consensus       218 -Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv  296 (420)
T KOG2096|consen  218 -GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV  296 (420)
T ss_pred             -CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence             9999999988888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhcccc
Q 013578          318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHE  397 (440)
Q Consensus       318 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~  397 (440)
                      +.||+++|||++-.....+++...+..+.+.....+...   +++++|+|+.||.+.+..+++|..++|+....++..|.
T Consensus       297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~---RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~  373 (420)
T KOG2096|consen  297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV---RLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHS  373 (420)
T ss_pred             ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce---EEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhc
Confidence            999999999999999888888888887766666555444   79999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      +.|.+++|+++|        ++++|+| |..+++..
T Consensus       374 ~~Is~is~~~~g--------~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  374 TTISSISYSSDG--------KYIATCG-DRYVRVIR  400 (420)
T ss_pred             CceeeEEecCCC--------cEEeeec-ceeeeeec
Confidence            999999999999        8999998 88888876

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-49  Score=318.91  Aligned_cols=301  Identities=21%  Similarity=0.343  Sum_probs=251.1

Q ss_pred             ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      ..+...+.||.++|.|++|+|+|.+||||+.|.++|+||+.+...     .....+|..-|.+++|+|||+.|++++.+ 
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-----~~t~KgH~~WVlcvawsPDgk~iASG~~d-  178 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-----LFTCKGHKNWVLCVAWSPDGKKIASGSKD-  178 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-----ceeecCCccEEEEEEECCCcchhhccccC-
Confidence            345678999999999999999999999999999999999998763     35567889999999999999999999988 


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK  240 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  240 (440)
                        ..|.+|+........               +...+|.+.+....+.+.  ...|+.+ +|++++.||.|+|||+..++
T Consensus       179 --g~I~lwdpktg~~~g---------------~~l~gH~K~It~Lawep~--hl~p~~r-~las~skDg~vrIWd~~~~~  238 (480)
T KOG0271|consen  179 --GSIRLWDPKTGQQIG---------------RALRGHKKWITALAWEPL--HLVPPCR-RLASSSKDGSVRIWDTKLGT  238 (480)
T ss_pred             --CeEEEecCCCCCccc---------------ccccCcccceeEEeeccc--ccCCCcc-ceecccCCCCEEEEEccCce
Confidence              578888866543221               112233333333222221  2245666 89999999999999999999


Q ss_pred             eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc-----------C
Q 013578          241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA-----------P  309 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----------p  309 (440)
                      ++..+.+|..+|+|+.|--+| ++++|+.|++|++|+...+.        +...+++|..+|+.++.+           |
T Consensus       239 ~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~--------~~r~lkGHahwvN~lalsTdy~LRtgaf~~  309 (480)
T KOG0271|consen  239 CVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK--------LCRELKGHAHWVNHLALSTDYVLRTGAFDH  309 (480)
T ss_pred             EEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchh--------HHHhhcccchheeeeeccchhhhhcccccc
Confidence            999999999999999998654 89999999999999987765        788999999999999887           2


Q ss_pred             CC-------------------------CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578          310 NS-------------------------EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS  364 (440)
Q Consensus       310 ~~-------------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  364 (440)
                      .+                         ..|++|+.|.++.+|+-....             .++....+|...|+.+.||
T Consensus       310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-------------kpi~rmtgHq~lVn~V~fS  376 (480)
T KOG0271|consen  310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-------------KPITRMTGHQALVNHVSFS  376 (480)
T ss_pred             ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-------------cchhhhhchhhheeeEEEC
Confidence            22                         359999999999999876332             1334456888889999999


Q ss_pred             CCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          365 SDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       365 ~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ||++++|+++ |+.|++|+..+|+.+..+ .+|-+.|..++|+.|.        ++|++|+.|.+++||++.+.+
T Consensus       377 Pd~r~IASaSFDkSVkLW~g~tGk~lasf-RGHv~~VYqvawsaDs--------RLlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  377 PDGRYIASASFDKSVKLWDGRTGKFLASF-RGHVAAVYQVAWSADS--------RLLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             CCccEEEEeecccceeeeeCCCcchhhhh-hhccceeEEEEeccCc--------cEEEEcCCCceEEEEEeeeee
Confidence            9999999987 999999999999999999 6999999999999998        999999999999999998754

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.9e-48  Score=309.41  Aligned_cols=314  Identities=23%  Similarity=0.329  Sum_probs=258.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe
Q 013578           58 SKKSHSKPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI  133 (440)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~  133 (440)
                      +...++.-...++++.|.+.|+|+.    ++.+.+||...|.|++|+|||+.||+|+.||+|++||..+++.    ..+.
T Consensus       120 ~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----~g~~  195 (480)
T KOG0271|consen  120 SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----IGRA  195 (480)
T ss_pred             EEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----cccc
Confidence            3344444455688899999999976    5778999999999999999999999999999999999988764    4566


Q ss_pred             cCCCCCCCceEEEcc-----CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeec
Q 013578          134 NLPPGGPPTAVAFAD-----NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFG  208 (440)
Q Consensus       134 ~~~~~~~v~~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (440)
                      ..+|...|++++|.|     ..+++++++.|   ..+.+|+....                        .....+..+..
T Consensus       196 l~gH~K~It~Lawep~hl~p~~r~las~skD---g~vrIWd~~~~------------------------~~~~~lsgHT~  248 (480)
T KOG0271|consen  196 LRGHKKWITALAWEPLHLVPPCRRLASSSKD---GSVRIWDTKLG------------------------TCVRTLSGHTA  248 (480)
T ss_pred             ccCcccceeEEeecccccCCCccceecccCC---CCEEEEEccCc------------------------eEEEEeccCcc
Confidence            778999999999975     56788888877   45566655432                        11122222222


Q ss_pred             ccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEec-----------CCC----------------
Q 013578          209 ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAIS-----------PNG----------------  261 (440)
Q Consensus       209 ~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~----------------  261 (440)
                      +..+.-. .|..++++++.|++|++|+...|.+.+.+.+|..-|+.++.+           |.+                
T Consensus       249 ~VTCvrw-GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r  327 (480)
T KOG0271|consen  249 SVTCVRW-GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER  327 (480)
T ss_pred             ceEEEEE-cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence            2222212 234499999999999999999999999999999888888776           223                


Q ss_pred             ---------CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccc
Q 013578          262 ---------RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY  332 (440)
Q Consensus       262 ---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~  332 (440)
                               ..|++|+.|.++.+|+-...+       +++..+.+|+.-|+.+.|+||++++|+++.|..|++||.++++
T Consensus       328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~k-------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk  400 (480)
T KOG0271|consen  328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSK-------KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK  400 (480)
T ss_pred             HHHhhccCcceeEEecCCceEEEecccccc-------cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc
Confidence                     359999999999999975443       3677889999999999999999999999999999999999876


Q ss_pred             cccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCC
Q 013578          333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP  411 (440)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  411 (440)
                      .+              ....+|...|+.++|+.|.++|++|+ |.++++|++++.++...+ .+|.+.|.++.|+|||  
T Consensus       401 ~l--------------asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL-pGh~DEVf~vDwspDG--  463 (480)
T KOG0271|consen  401 FL--------------ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL-PGHADEVFAVDWSPDG--  463 (480)
T ss_pred             hh--------------hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC-CCCCceEEEEEecCCC--
Confidence            43              33457888899999999999999987 999999999999999999 5999999999999999  


Q ss_pred             CCCCcceEEEEeeCCCeEEEEe
Q 013578          412 MGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       412 ~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                            ..+++|+.|..+++|.
T Consensus       464 ------~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  464 ------QRVASGGKDKVLRLWR  479 (480)
T ss_pred             ------ceeecCCCceEEEeec
Confidence                  8999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.2e-45  Score=287.26  Aligned_cols=293  Identities=19%  Similarity=0.301  Sum_probs=238.2

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      .++|+||.+.|.++.|++|.++|+++|.||.+.|||.-+....     ....-...-|..++|+|.+++++.++.|.   
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----haipl~s~WVMtCA~sPSg~~VAcGGLdN---  119 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----HAIPLPSSWVMTCAYSPSGNFVACGGLDN---  119 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----eEEecCceeEEEEEECCCCCeEEecCcCc---
Confidence            4789999999999999999999999999999999998776532     12222336799999999999999998773   


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccc-ccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGAS-ATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ...+|+.......          +.        ....+.+..+.+.. ++.+..|+  .+++++.|.+..+||+++++.+
T Consensus       120 ~Csiy~ls~~d~~----------g~--------~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~  179 (343)
T KOG0286|consen  120 KCSIYPLSTRDAE----------GN--------VRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQT  179 (343)
T ss_pred             eeEEEeccccccc----------cc--------ceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEE
Confidence            3333333211000          00        00111122222222 22223333  7999999999999999999999


Q ss_pred             eeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          243 GNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      ..+.+|.+.|.++.++| +++.|++|+.|+..++||++.+.        +.+.|.+|.+.|+++.|.|+|.-|++|+.|+
T Consensus       180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--------c~qtF~ghesDINsv~ffP~G~afatGSDD~  251 (343)
T KOG0286|consen  180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--------CVQTFEGHESDINSVRFFPSGDAFATGSDDA  251 (343)
T ss_pred             EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc--------eeEeecccccccceEEEccCCCeeeecCCCc
Confidence            99999999999999999 99999999999999999998876        8999999999999999999999999999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEI  400 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v  400 (440)
                      ++++||++....+.            .+........|++++||..|++|.+|. |.++.+||.-.++.+..+ .+|+..|
T Consensus       252 tcRlyDlRaD~~~a------------~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-~GHeNRv  318 (343)
T KOG0286|consen  252 TCRLYDLRADQELA------------VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-AGHENRV  318 (343)
T ss_pred             eeEEEeecCCcEEe------------eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-eccCCee
Confidence            99999999754432            233444556799999999999998865 899999999999999998 5999999


Q ss_pred             EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      .++..+|||        .-|+||+.|.++|||.
T Consensus       319 Scl~~s~DG--------~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  319 SCLGVSPDG--------MAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEEEECCCC--------cEEEecchhHheeecC
Confidence            999999999        8999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-45  Score=300.37  Aligned_cols=283  Identities=22%  Similarity=0.352  Sum_probs=244.1

Q ss_pred             cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC--CCeEEEEeecCCcceE
Q 013578           88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN--ATSIVVATHNLSGCSL  165 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~~~~~~~~  165 (440)
                      .|-+.+|..+.||.|++.|||||.+|.++||+..+..     ....+.+|...+.++.|+|.  +..+++++.|+   .+
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg---tv  243 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----LLQTLRGHTSRVGAAVFHPVDSDLNLATASADG---TV  243 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----eeEEEeccccceeeEEEccCCCccceeeeccCC---ce
Confidence            3568899999999999999999999999999998763     45677899999999999997  56889998884   45


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV  245 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  245 (440)
                      .+|+.......                ....+|..++.       .+.|.|+|+ +|.+++.|.+-++||++++..+...
T Consensus       244 klw~~~~e~~l----------------~~l~gH~~RVs-------~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~Q  299 (459)
T KOG0272|consen  244 KLWKLSQETPL----------------QDLEGHLARVS-------RVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQ  299 (459)
T ss_pred             eeeccCCCcch----------------hhhhcchhhhe-------eeeecCCCc-eeeecccccchhhcccccchhhHhh
Confidence            55554432110                11122322222       334589999 9999999999999999999999999


Q ss_pred             eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578          246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV  325 (440)
Q Consensus       246 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i  325 (440)
                      .+|...|.+++|++||.++++|+.|..-+|||++++.        ++..+.+|..+|.+++|+|+|..|||||.|++++|
T Consensus       300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr--------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kV  371 (459)
T KOG0272|consen  300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR--------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKV  371 (459)
T ss_pred             cccccccceeEecCCCceeeccCccchhheeecccCc--------EEEEecccccceeeEeECCCceEEeecCCCCcEEE
Confidence            9999999999999999999999999999999999987        89999999999999999999999999999999999


Q ss_pred             EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC-CCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEE
Q 013578          326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS-DGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCM  403 (440)
Q Consensus       326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v  403 (440)
                      ||++...+              .+...+|..-|+.+.|+| .|.+|++++ |+++++|...++.++..+ .||++.|.++
T Consensus       372 WDLR~r~~--------------ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGHe~kV~s~  436 (459)
T KOG0272|consen  372 WDLRMRSE--------------LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGHEGKVISL  436 (459)
T ss_pred             eeeccccc--------------ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh-cCCccceEEE
Confidence            99996644              234457777899999999 688898876 999999999999999999 5999999999


Q ss_pred             EecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          404 AWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       404 ~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      +.++++        ..++|++.|.++++|.
T Consensus       437 Dis~d~--------~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  437 DISPDS--------QAIATSSFDRTIKLWR  458 (459)
T ss_pred             EeccCC--------ceEEEeccCceeeecc
Confidence            999998        8999999999999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-40  Score=255.79  Aligned_cols=253  Identities=21%  Similarity=0.270  Sum_probs=216.0

Q ss_pred             cccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           84 VNTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ..+|++|.+.|+.++..+. ...+++++.|.++.+|++.......-...+.+.+|...|..+..+++++           
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~-----------   76 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN-----------   76 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc-----------
Confidence            4579999999999999986 5688999999999999998765544445666777888888888777654           


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                                                                                ++++++.|+++++||+.+++..
T Consensus        77 ----------------------------------------------------------~alS~swD~~lrlWDl~~g~~t   98 (315)
T KOG0279|consen   77 ----------------------------------------------------------FALSASWDGTLRLWDLATGEST   98 (315)
T ss_pred             ----------------------------------------------------------eEEeccccceEEEEEecCCcEE
Confidence                                                                      7889999999999999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec--cccceEEEEEcCC--CCEEEEEe
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG--HKSAVTWLCFAPN--SEQIITAS  318 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~--~~~l~s~~  318 (440)
                      +.+.+|...|.+++|++|.+.+++|+.|.+|++|++...         +..++..  +.++|.|+.|+|+  ..+|++++
T Consensus        99 ~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~---------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s  169 (315)
T KOG0279|consen   99 RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV---------CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS  169 (315)
T ss_pred             EEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc---------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence            999999999999999999999999999999999998543         2333333  3789999999998  67899999


Q ss_pred             CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhcccc
Q 013578          319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHE  397 (440)
Q Consensus       319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~  397 (440)
                      .|++|++||+++.+..              ....+|...++.+++||||.+.++|. ||.+.+||+..++.+..+.  |.
T Consensus       170 ~DktvKvWnl~~~~l~--------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--a~  233 (315)
T KOG0279|consen  170 WDKTVKVWNLRNCQLR--------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--AF  233 (315)
T ss_pred             CCceEEEEccCCcchh--------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc--CC
Confidence            9999999999965432              23446778899999999999999976 9999999999999998874  99


Q ss_pred             CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      ..|.+++|+|+         ++.+.+..+..|+|||+++..+
T Consensus       234 ~~v~sl~fspn---------rywL~~at~~sIkIwdl~~~~~  266 (315)
T KOG0279|consen  234 DIVNSLCFSPN---------RYWLCAATATSIKIWDLESKAV  266 (315)
T ss_pred             CeEeeEEecCC---------ceeEeeccCCceEEEeccchhh
Confidence            99999999999         5666667778899999988653

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-40  Score=255.35  Aligned_cols=251  Identities=22%  Similarity=0.338  Sum_probs=214.9

Q ss_pred             CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578           80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN  159 (440)
Q Consensus        80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~  159 (440)
                      ...+++.|.||...|..+..++||++.+++|.|+++|+||+.+++     ..+.+.+|...|.+++|++|.+        
T Consensus        52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~-----~t~~f~GH~~dVlsva~s~dn~--------  118 (315)
T KOG0279|consen   52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE-----STRRFVGHTKDVLSVAFSTDNR--------  118 (315)
T ss_pred             cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc-----EEEEEEecCCceEEEEecCCCc--------
Confidence            345688999999999999999999999999999999999999874     3566778999999999998765        


Q ss_pred             CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578          160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG  239 (440)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  239 (440)
                                                                                   .+++|+.|.+|++|+.. +
T Consensus       119 -------------------------------------------------------------qivSGSrDkTiklwnt~-g  136 (315)
T KOG0279|consen  119 -------------------------------------------------------------QIVSGSRDKTIKLWNTL-G  136 (315)
T ss_pred             -------------------------------------------------------------eeecCCCcceeeeeeec-c
Confidence                                                                         78899999999999987 5


Q ss_pred             ceeeeeeCC--CCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578          240 KLLGNVDTN--QLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       240 ~~~~~~~~~--~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  315 (440)
                      .+..++..+  ..-|.|+.|+|+  ..+|++++.|+++++||++.-+        ....+.+|++.++.+++||||...+
T Consensus       137 ~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~--------l~~~~~gh~~~v~t~~vSpDGslca  208 (315)
T KOG0279|consen  137 VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ--------LRTTFIGHSGYVNTVTVSPDGSLCA  208 (315)
T ss_pred             cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc--------hhhccccccccEEEEEECCCCCEEe
Confidence            555555433  677999999998  6899999999999999997655        6778899999999999999999999


Q ss_pred             EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhcc
Q 013578          316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKA  395 (440)
Q Consensus       316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~  395 (440)
                      +|+.||.+.+||++.++++..               .++...|.+++|+|+..+|+.+.+..|+|||++++.++..+...
T Consensus       209 sGgkdg~~~LwdL~~~k~lys---------------l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d  273 (315)
T KOG0279|consen  209 SGGKDGEAMLWDLNEGKNLYS---------------LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLD  273 (315)
T ss_pred             cCCCCceEEEEEccCCceeEe---------------ccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccc
Confidence            999999999999997765422               23445689999999999999999999999999999988776421


Q ss_pred             c--------cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          396 H--------EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       396 h--------~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      -        .-...+++|+++|        ..|++|-.|+.|++|.+..
T Consensus       274 ~~g~s~~~~~~~clslaws~dG--------~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  274 GIGPSSKAGDPICLSLAWSADG--------QTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             ccccccccCCcEEEEEEEcCCC--------cEEEeeecCCcEEEEEeec
Confidence            1        2245778999999        8999999999999998753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-38  Score=244.28  Aligned_cols=295  Identities=19%  Similarity=0.319  Sum_probs=228.5

Q ss_pred             ccccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceeeE-EecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           83 DVNTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFL-RINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      .++.++||.+.|+.++|+|- |..|||||.|+.||+|+...+.  .+.+. .....|...|++++|+|.|++|++++.| 
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD-   82 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD-   82 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--cEEEEEeccccchheeeeeeecCCCcEEEEeecc-
Confidence            46789999999999999997 8899999999999999998522  22222 2334688999999999999999999998 


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-  239 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-  239 (440)
                        ....+|.......              .......+|..       ...++.++++|. +|++|+.|+.|.+|....+ 
T Consensus        83 --~t~~Iw~k~~~ef--------------ecv~~lEGHEn-------EVK~Vaws~sG~-~LATCSRDKSVWiWe~dedd  138 (312)
T KOG0645|consen   83 --ATVVIWKKEDGEF--------------ECVATLEGHEN-------EVKCVAWSASGN-YLATCSRDKSVWIWEIDEDD  138 (312)
T ss_pred             --ceEEEeecCCCce--------------eEEeeeecccc-------ceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCC
Confidence              3444444332100              00111122222       233455688888 9999999999999998744 


Q ss_pred             --ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578          240 --KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       240 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  317 (440)
                        ++...++.|...|..+.|+|...+|++++.|.+|++|+-...     ..+.++.++.+|...|.+++|+|.|..|+++
T Consensus       139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d-----ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~  213 (312)
T KOG0645|consen  139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD-----DDWECVQTLDGHENTVWSLAFDNIGSRLVSC  213 (312)
T ss_pred             cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC-----CCeeEEEEecCccceEEEEEecCCCceEEEe
Confidence              567888999999999999999999999999999999986532     3456889999999999999999999999999


Q ss_pred             eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCc------cchhh
Q 013578          318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETG------KVLDT  391 (440)
Q Consensus       318 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~------~~~~~  391 (440)
                      +.|++|+||...+.-                  ..-|...++.++|. +|.+-.+|.|+.|++|.....      +.+..
T Consensus       214 sdD~tv~Iw~~~~~~------------------~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~  274 (312)
T KOG0645|consen  214 SDDGTVSIWRLYTDL------------------SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK  274 (312)
T ss_pred             cCCcceEeeeeccCc------------------chhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHh
Confidence            999999999865221                  11234457789998 554444466999999976543      33444


Q ss_pred             hhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          392 AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       392 ~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ....|...|+++.|.|...       .+|++|+.||.|++|.+.
T Consensus       275 ~~~aHe~dVNsV~w~p~~~-------~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  275 KEGAHEVDVNSVQWNPKVS-------NRLASGGDDGIVNFWELE  311 (312)
T ss_pred             hhcccccccceEEEcCCCC-------CceeecCCCceEEEEEec
Confidence            5578999999999999531       799999999999999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.9e-40  Score=255.48  Aligned_cols=299  Identities=15%  Similarity=0.283  Sum_probs=239.2

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      .++..+.||.+.|+.+.|+|+|.+||||+.|..|.+|++......    .-...+|.+.|..+.|..|+..+++++.|  
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN----~~~lkgHsgAVM~l~~~~d~s~i~S~gtD--  111 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN----FWVLKGHSGAVMELHGMRDGSHILSCGTD--  111 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc----eeeeccccceeEeeeeccCCCEEEEecCC--
Confidence            356778999999999999999999999999999999998755433    22334889999999999999999999988  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                       ..+..|+.+........+....+                 +..      +....-|..++.+++.|+++++||+++.+.
T Consensus       112 -k~v~~wD~~tG~~~rk~k~h~~~-----------------vNs------~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~  167 (338)
T KOG0265|consen  112 -KTVRGWDAETGKRIRKHKGHTSF-----------------VNS------LDPSRRGPQLVCSGSDDGTLKLWDIRKKEA  167 (338)
T ss_pred             -ceEEEEecccceeeehhccccce-----------------eee------cCccccCCeEEEecCCCceEEEEeecccch
Confidence             67888887766433222211111                 110      111334566899999999999999999988


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      ++++.. ...++++.|..++..+.+|+-|+.|++||++...        ..+.+.||.++|+++..+|+|.++.+-+.|.
T Consensus       168 ~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d--------~~~~lsGh~DtIt~lsls~~gs~llsnsMd~  238 (338)
T KOG0265|consen  168 IKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND--------GLYTLSGHADTITGLSLSRYGSFLLSNSMDN  238 (338)
T ss_pred             hhcccc-ceeEEEEEecccccceeeccccCceeeeccccCc--------ceEEeecccCceeeEEeccCCCccccccccc
Confidence            887754 5578999999999999999999999999998776        7889999999999999999999999999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEI  400 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v  400 (440)
                      ++++||++....-   .+++..+....+   .-......++|+|+++.+.+|+ |..+++||..+...+..+ .+|.+.|
T Consensus       239 tvrvwd~rp~~p~---~R~v~if~g~~h---nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-pGh~gsv  311 (338)
T KOG0265|consen  239 TVRVWDVRPFAPS---QRCVKIFQGHIH---NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-PGHYGSV  311 (338)
T ss_pred             eEEEEEecccCCC---CceEEEeecchh---hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-CCcceeE
Confidence            9999999843211   111222221122   2223345789999999999876 999999999999999998 5999999


Q ss_pred             EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ++++|+|..        .+|.+++.|.+|++=.+
T Consensus       312 n~~~Fhp~e--------~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  312 NEVDFHPTE--------PIILSCSSDKTIYLGEI  337 (338)
T ss_pred             EEeeecCCC--------cEEEEeccCceeEeecc
Confidence            999999998        89999999999987443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.9e-40  Score=289.63  Aligned_cols=258  Identities=24%  Similarity=0.384  Sum_probs=217.3

Q ss_pred             CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcce--------------------------eeEEe
Q 013578           80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSF--------------------------KFLRI  133 (440)
Q Consensus        80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~--------------------------~~~~~  133 (440)
                      ...++.++..-...++|..|++|++.||.|-.|..|++|.+........                          ...+.
T Consensus       367 pSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~  446 (707)
T KOG0263|consen  367 PSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT  446 (707)
T ss_pred             CcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence            3345556655567899999999999999999999999999874321100                          00111


Q ss_pred             cCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccc
Q 013578          134 NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY  213 (440)
Q Consensus       134 ~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (440)
                      ..+|.++|..+.                                                                    
T Consensus       447 L~GH~GPVyg~s--------------------------------------------------------------------  458 (707)
T KOG0263|consen  447 LYGHSGPVYGCS--------------------------------------------------------------------  458 (707)
T ss_pred             eecCCCceeeee--------------------------------------------------------------------
Confidence            222333333333                                                                    


Q ss_pred             cCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578          214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      ++|+.+ +|++|++|++||+|.+.+..++-.+.+|..+|..+.|+|.|-+||+++.|++-++|......        +++
T Consensus       459 FsPd~r-fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~--------PlR  529 (707)
T KOG0263|consen  459 FSPDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK--------PLR  529 (707)
T ss_pred             eccccc-ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC--------chh
Confidence            355555 89999999999999999999999999999999999999999999999999999999987655        788


Q ss_pred             eeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe
Q 013578          294 QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT  373 (440)
Q Consensus       294 ~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  373 (440)
                      .+.+|.+.|.|+.|+|++.|+++||.|.+||+||+.++..+       +.       ..||..+|.+++|||+|++|++|
T Consensus       530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-------Ri-------F~GH~~~V~al~~Sp~Gr~LaSg  595 (707)
T KOG0263|consen  530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-------RI-------FTGHKGPVTALAFSPCGRYLASG  595 (707)
T ss_pred             hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-------EE-------ecCCCCceEEEEEcCCCceEeec
Confidence            89999999999999999999999999999999999987543       22       25788999999999999999998


Q ss_pred             c-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          374 H-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       374 ~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      + |+.|.+||+.+++++..+ .+|.+.|.++.|+.+|        ..||+||.|.+|++||+...
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l-~~Ht~ti~SlsFS~dg--------~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQL-KGHTGTIYSLSFSRDG--------NVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhh-hcccCceeEEEEecCC--------CEEEecCCCCeEEEEEchhh
Confidence            7 899999999999999999 5999999999999999        89999999999999998653

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.5e-40  Score=270.13  Aligned_cols=262  Identities=22%  Similarity=0.276  Sum_probs=223.3

Q ss_pred             CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccC--CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCC
Q 013578           67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP  140 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~d--g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~  140 (440)
                      ..++++-++..+.|..    .+++|.||++.|.++.|+|.  +..||||+.||++++|++++..     .+....+|...
T Consensus       189 ~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~-----~l~~l~gH~~R  263 (459)
T KOG0272|consen  189 HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET-----PLQDLEGHLAR  263 (459)
T ss_pred             eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc-----chhhhhcchhh
Confidence            3466777788888865    37889999999999999996  6799999999999999998764     34566788899


Q ss_pred             CceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe
Q 013578          141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST  220 (440)
Q Consensus       141 v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (440)
                      |..++|+|+|++|.+++.|   ..+.+|+.......                -...+|...+       ..+.+.+||. 
T Consensus       264 Vs~VafHPsG~~L~TasfD---~tWRlWD~~tk~El----------------L~QEGHs~~v-------~~iaf~~DGS-  316 (459)
T KOG0272|consen  264 VSRVAFHPSGKFLGTASFD---STWRLWDLETKSEL----------------LLQEGHSKGV-------FSIAFQPDGS-  316 (459)
T ss_pred             heeeeecCCCceeeecccc---cchhhcccccchhh----------------Hhhccccccc-------ceeEecCCCc-
Confidence            9999999999999999998   67778877654211                1122333333       3344588999 


Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      ++++|+.|..-+|||++++.++..+.+|..+|..+.|+|+|..||+|+.|++++|||++...        .+..+.+|..
T Consensus       317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~--------~ly~ipAH~n  388 (459)
T KOG0272|consen  317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS--------ELYTIPAHSN  388 (459)
T ss_pred             eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc--------cceecccccc
Confidence            99999999999999999999999999999999999999999999999999999999998776        6888999999


Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578          301 AVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL  378 (440)
Q Consensus       301 ~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i  378 (440)
                      -|+.+.|+| .|.+|+|++.|++++||..++..++              ....||...|.++.+++|+.++++++ |.++
T Consensus       389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~--------------ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  389 LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL--------------KSLAGHEGKVISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             hhhheEecccCCeEEEEcccCcceeeecCCCcccc--------------hhhcCCccceEEEEeccCCceEEEeccCcee
Confidence            999999999 7789999999999999998866543              34568889999999999999999876 9999


Q ss_pred             EEEE
Q 013578          379 QWLS  382 (440)
Q Consensus       379 ~i~d  382 (440)
                      ++|.
T Consensus       455 KLW~  458 (459)
T KOG0272|consen  455 KLWR  458 (459)
T ss_pred             eecc
Confidence            9995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-39  Score=261.37  Aligned_cols=292  Identities=22%  Similarity=0.354  Sum_probs=247.3

Q ss_pred             ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      +.+.+.+.||..+|+.+-|+|+-..+++++.|++|++||..+++.     .....+|...+.+++|+..|+++++++.|.
T Consensus        98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-----e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl  172 (406)
T KOG0295|consen   98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-----ERSLRGHTDSVFDISFDASGKYLATCSSDL  172 (406)
T ss_pred             CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-----hhhhhccccceeEEEEecCccEEEecCCcc
Confidence            345678899999999999999999999999999999999998874     456678888999999999999999999884


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK  240 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  240 (440)
                      .   +..|+........                      +.........+.+++.|.|. ++++++.|.+|+.|++.++.
T Consensus       173 ~---~~LWd~~~~~~c~----------------------ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~  226 (406)
T KOG0295|consen  173 S---AKLWDFDTFFRCI----------------------KSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGY  226 (406)
T ss_pred             c---hhheeHHHHHHHH----------------------HHhcCcccceeeEEEEecCC-eeeecccccceeEEecccce
Confidence            3   5555544321000                      00011111233344566776 99999999999999999999


Q ss_pred             eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC----------
Q 013578          241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN----------  310 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~----------  310 (440)
                      ++.++.+|..-+..++.+.||.++++++.|.++++|-+.+..        +...++.|..+|.+++|.|.          
T Consensus       227 cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~--------~k~~lR~hEh~vEci~wap~~~~~~i~~at  298 (406)
T KOG0295|consen  227 CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ--------CKAELREHEHPVECIAWAPESSYPSISEAT  298 (406)
T ss_pred             eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch--------hhhhhhccccceEEEEecccccCcchhhcc
Confidence            999999999999999999999999999999999999987765        67788999999999999773          


Q ss_pred             -----CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcC
Q 013578          311 -----SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVE  384 (440)
Q Consensus       311 -----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~  384 (440)
                           +.++.+++.|++|++||+.++.++              ....+|...|..++|+|.|+||+++ +|+++++||++
T Consensus       299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL--------------~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCL--------------FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK  364 (406)
T ss_pred             CCCCCccEEEeecccceEEEEeccCCeEE--------------EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence                 258999999999999999988764              4456888999999999999999986 58999999999


Q ss_pred             CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       385 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ++++...++ +|..-|++++|+.+.        .+++||+-|.++++|..
T Consensus       365 ~~~cmk~~~-ah~hfvt~lDfh~~~--------p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  365 NLQCMKTLE-AHEHFVTSLDFHKTA--------PYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cceeeeccC-CCcceeEEEecCCCC--------ceEEeccccceeeeeec
Confidence            999999995 999999999999998        79999999999999974

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.5e-38  Score=240.18  Aligned_cols=278  Identities=19%  Similarity=0.234  Sum_probs=219.1

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccC
Q 013578          104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQS  183 (440)
Q Consensus       104 ~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (440)
                      -+|+|+|.|-+||+|...++.     +.+.....++.|..+...|+++.|++++..    .+++++.....         
T Consensus        11 viLvsA~YDhTIRfWqa~tG~-----C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q----hvRlyD~~S~n---------   72 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGI-----CSRTIQHPDSQVNRLEITPDKKDLAAAGNQ----HVRLYDLNSNN---------   72 (311)
T ss_pred             eEEEeccCcceeeeeehhcCe-----EEEEEecCccceeeEEEcCCcchhhhccCC----eeEEEEccCCC---------
Confidence            489999999999999999875     455555667889999999999999998865    77777765542         


Q ss_pred             CCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCe
Q 013578          184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF  263 (440)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  263 (440)
                        +.+...++.+...   +.       .+-|..+|+ .+++|++||+++|||++...+.+.++. ..+|+++..+|+...
T Consensus        73 --p~Pv~t~e~h~kN---Vt-------aVgF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQte  138 (311)
T KOG0315|consen   73 --PNPVATFEGHTKN---VT-------AVGFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTE  138 (311)
T ss_pred             --CCceeEEeccCCc---eE-------EEEEeecCe-EEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcce
Confidence              1122222222111   11       122355777 999999999999999999777666664 589999999999999


Q ss_pred             EEEEecCCCEEEEEeEecCCCceeeeeeeeee-eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccc
Q 013578          264 LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLK  342 (440)
Q Consensus       264 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  342 (440)
                      |++|..+|.|++||+....        +...+ .....+|.++...|||.+|+.+...|..++|++-+....        
T Consensus       139 Lis~dqsg~irvWDl~~~~--------c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~--------  202 (311)
T KOG0315|consen  139 LISGDQSGNIRVWDLGENS--------CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA--------  202 (311)
T ss_pred             EEeecCCCcEEEEEccCCc--------cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc--------
Confidence            9999999999999997653        22222 223468999999999999999999999999999763211        


Q ss_pred             cccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc-cchhhhhccccCCeEEEEecCCCCCCCCCcceEE
Q 013578          343 VLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG-KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL  420 (440)
Q Consensus       343 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l  420 (440)
                      ..-.|......|...+..+.+|||+++||+++ |.+++||+.++. +....+ .+|..-+++++|+.|+        .||
T Consensus       203 s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l-~gh~rWvWdc~FS~dg--------~Yl  273 (311)
T KOG0315|consen  203 SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL-TGHQRWVWDCAFSADG--------EYL  273 (311)
T ss_pred             ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEe-ecCCceEEeeeeccCc--------cEE
Confidence            11124455667778899999999999999865 999999999988 444445 6899999999999999        999


Q ss_pred             EEeeCCCeEEEEeCCCCC
Q 013578          421 ATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       421 ~t~~~Dg~i~vw~~~~~~  438 (440)
                      +||+.|+.+++|+++.++
T Consensus       274 vTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  274 VTASSDHTARLWDLSAGK  291 (311)
T ss_pred             EecCCCCceeecccccCc
Confidence            999999999999999886

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.3e-38  Score=254.87  Aligned_cols=251  Identities=18%  Similarity=0.281  Sum_probs=226.6

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ...+.+.||.+.|.|+++.|.+.+|+||+.|++++|||+.++.     +.....+|...|..+++++...          
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----LkltltGhi~~vr~vavS~rHp----------  206 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----LKLTLTGHIETVRGVAVSKRHP----------  206 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----EEEeecchhheeeeeeecccCc----------
Confidence            4577899999999999999999999999999999999999885     3345566888889999886533          


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                                                                                 ++++++.|+.|+.||++..+.
T Consensus       207 -----------------------------------------------------------YlFs~gedk~VKCwDLe~nkv  227 (460)
T KOG0285|consen  207 -----------------------------------------------------------YLFSAGEDKQVKCWDLEYNKV  227 (460)
T ss_pred             -----------------------------------------------------------eEEEecCCCeeEEEechhhhh
Confidence                                                                       789999999999999999999


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      ++.+.+|-..|.|+..+|.-..|++|+.|..+++||+++..        .+..+.||..+|.++.+.|-...+++||.|+
T Consensus       228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~--------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA--------SVHVLSGHTNPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc--------eEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence            99999999999999999999999999999999999998876        7999999999999999999888999999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeE
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEIT  401 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~  401 (440)
                      +|++||++.++..              .....|...+.+++.+|....+|+++-..|+-|++..|..+..+ .+|.+-|+
T Consensus       300 tvrlWDl~agkt~--------------~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nl-sgh~~iin  364 (460)
T KOG0285|consen  300 TVRLWDLRAGKTM--------------ITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNL-SGHNAIIN  364 (460)
T ss_pred             eEEEeeeccCcee--------------EeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcc-ccccceee
Confidence            9999999976432              23345677799999999999999999999999999999999997 69999999


Q ss_pred             EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +++.+.|+         ++++|++.|.+..||..++-
T Consensus       365 tl~~nsD~---------v~~~G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  365 TLSVNSDG---------VLVSGGDNGSIMFWDWKSGH  392 (460)
T ss_pred             eeeeccCc---------eEEEcCCceEEEEEecCcCc
Confidence            99999995         99999999999999998763

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.5e-39  Score=262.28  Aligned_cols=284  Identities=20%  Similarity=0.288  Sum_probs=237.9

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE  170 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~  170 (440)
                      .-.|..+.|.|+|+.|++|+..|.+.+|+.....     +-.+...|+.+|+++.|++++.+++++..+   ..|.+|+.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-----FEtilQaHDs~Vr~m~ws~~g~wmiSgD~g---G~iKyWqp  167 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-----FETILQAHDSPVRTMKWSHNGTWMISGDKG---GMIKYWQP  167 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceee-----HHHHhhhhcccceeEEEccCCCEEEEcCCC---ceEEeccc
Confidence            4579999999999999999999999999975432     234556799999999999999999998776   57777775


Q ss_pred             ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCC
Q 013578          171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL  250 (440)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  250 (440)
                      ........                 ..+..      .....+.++|++. .+++|++|++|+|||....+....+.+|..
T Consensus       168 nmnnVk~~-----------------~ahh~------eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgw  223 (464)
T KOG0284|consen  168 NMNNVKII-----------------QAHHA------EAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGW  223 (464)
T ss_pred             chhhhHHh-----------------hHhhh------hhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCC
Confidence            54311000                 00000      1223445577666 899999999999999998888888999999


Q ss_pred             cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q 013578          251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINV  330 (440)
Q Consensus       251 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~  330 (440)
                      .|+++.|+|.-.++++|+.|..|++||.+++.        ++.++.+|+..|..+.|+|++++|+++|.|..++++|+++
T Consensus       224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~--------cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS--------CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             CcceeccCCccceeEEccCCceeEeecCCCcc--------hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence            99999999999999999999999999998887        8999999999999999999999999999999999999996


Q ss_pred             cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEE-ecCCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578          331 RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAA-THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~-~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                      .+.+              ....+|...+.++.|+|-.. +|++ |.||.|..|.+...+++..+..+|.+.|++++|+|-
T Consensus       296 mkEl--------------~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl  361 (464)
T KOG0284|consen  296 MKEL--------------FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL  361 (464)
T ss_pred             hHHH--------------HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccc
Confidence            5443              33457788899999999766 4444 569999999999888888888899999999999999


Q ss_pred             CCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          409 TIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       409 ~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      |        .+|++|+.|.++++|.-..
T Consensus       362 G--------hil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  362 G--------HILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             c--------eeEeecCCCcceeeeccCC
Confidence            9        8999999999999997653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-37  Score=258.08  Aligned_cols=278  Identities=19%  Similarity=0.301  Sum_probs=230.3

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE  171 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~  171 (440)
                      ..|++|+|+.+|.+||||+.||.+|+|+.....      ......|.++|.++.|+.+|.+|++++.|   ..+.+|+..
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------~~tl~~HkgPI~slKWnk~G~yilS~~vD---~ttilwd~~  306 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------ISTLGQHKGPIFSLKWNKKGTYILSGGVD---GTTILWDAH  306 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchh------hhhhhccCCceEEEEEcCCCCEEEeccCC---ccEEEEecc
Confidence            579999999999999999999999999987653      45566788999999999999999999988   345555543


Q ss_pred             cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc
Q 013578          172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK  251 (440)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  251 (440)
                      ........... ..+...+.|.                       +.. -+++++.|+.|+|+.+....++.++.+|..+
T Consensus       307 ~g~~~q~f~~~-s~~~lDVdW~-----------------------~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~  361 (524)
T KOG0273|consen  307 TGTVKQQFEFH-SAPALDVDWQ-----------------------SND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGE  361 (524)
T ss_pred             CceEEEeeeec-cCCccceEEe-----------------------cCc-eEeecCCCceEEEEEecCCCcceeeecccCc
Confidence            32211111000 0011122231                       222 6999999999999999999999999999999


Q ss_pred             ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC---------CEEEEEeCCCc
Q 013578          252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS---------EQIITASKDGT  322 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---------~~l~s~~~dg~  322 (440)
                      |.++.|+|.|.+|++++.|++++||......        ....+.+|...|..+.|+|.|         ..+++++.|++
T Consensus       362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~--------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst  433 (524)
T KOG0273|consen  362 VNALKWNPTGSLLASCSDDGTLKIWSMGQSN--------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST  433 (524)
T ss_pred             eEEEEECCCCceEEEecCCCeeEeeecCCCc--------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence            9999999999999999999999999986655        788899999999999999964         46899999999


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeE
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEIT  401 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~  401 (440)
                      |++||+..+.+              ++....|..+|.+++|+|+|+++|+|+ ||.|.+|++++++..+...  ..+.|.
T Consensus       434 V~lwdv~~gv~--------------i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~--~~~~If  497 (524)
T KOG0273|consen  434 VKLWDVESGVP--------------IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ--GTGGIF  497 (524)
T ss_pred             EEEEEccCCce--------------eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec--CCCeEE
Confidence            99999996654              344557788899999999999999998 9999999999999999874  566799


Q ss_pred             EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      .++|+.+|        .+|..+-.|+.+++-|++
T Consensus       498 el~Wn~~G--------~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  498 ELCWNAAG--------DKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEEcCCC--------CEEEEEecCCCceEEEec
Confidence            99999998        889999999999998875

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-37  Score=253.86  Aligned_cols=302  Identities=17%  Similarity=0.270  Sum_probs=234.8

Q ss_pred             cccCccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEE
Q 013578           77 KRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVA  156 (440)
Q Consensus        77 ~~~~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  156 (440)
                      ..++....+.|..|++.|+-+.||++|+||||++.|.+..+|++.....  ++......+|..+|..+.|+||.++++++
T Consensus       210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLlaC  287 (519)
T KOG0293|consen  210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLAC  287 (519)
T ss_pred             ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--eeeeeeeecccCceEEEEECCCCCeEEec
Confidence            3444556788999999999999999999999999999999999876543  55677788999999999999999999999


Q ss_pred             eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578          157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG  236 (440)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~  236 (440)
                      +.+   ..++.|+.............                      ..+...++.+.|||. .+++|+.|+++..||+
T Consensus       288 g~~---e~~~lwDv~tgd~~~~y~~~----------------------~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdl  341 (519)
T KOG0293|consen  288 GFD---EVLSLWDVDTGDLRHLYPSG----------------------LGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDL  341 (519)
T ss_pred             Cch---HheeeccCCcchhhhhcccC----------------------cCCCcceeEEccCCc-eeEecCCCCcEEEecC
Confidence            887   34777776655322211111                      123344556689998 8999999999999998


Q ss_pred             CCCceeeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578          237 KTGKLLGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       237 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  315 (440)
                      . |..+...++ ....|.++++++||+++++.+.|..|++|+.....        ... +.....+|+++..|.++++++
T Consensus       342 D-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~--------dr~-lise~~~its~~iS~d~k~~L  411 (519)
T KOG0293|consen  342 D-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV--------DRG-LISEEQPITSFSISKDGKLAL  411 (519)
T ss_pred             C-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh--------hhc-cccccCceeEEEEcCCCcEEE
Confidence            7 444444443 23458899999999999999999999999975543        111 333557899999999999999


Q ss_pred             EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC-CCCCEEEEec-CCEEEEEEcCCccchhhhh
Q 013578          316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS-SDGKILAATH-GSTLQWLSVETGKVLDTAE  393 (440)
Q Consensus       316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~  393 (440)
                      +.=.+..+++||++....+......           ..... +-.-+|. .+..++|+|+ |+.|+||+..+|+++..+ 
T Consensus       412 vnL~~qei~LWDl~e~~lv~kY~Gh-----------kq~~f-iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L-  478 (519)
T KOG0293|consen  412 VNLQDQEIHLWDLEENKLVRKYFGH-----------KQGHF-IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL-  478 (519)
T ss_pred             EEcccCeeEEeecchhhHHHHhhcc-----------cccce-EEEeccCCCCcceEEecCCCceEEEEEccCCceeEee-
Confidence            9999999999999855443221111           11112 2233443 4557999987 899999999999999999 


Q ss_pred             ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          394 KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       394 ~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      .||...|++|+|+|..+       .++|++|+||+||||....
T Consensus       479 sGHs~~vNcVswNP~~p-------~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  479 SGHSKTVNCVSWNPADP-------EMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCcceeeEEecCCCCH-------HHhhccCCCCeEEEecCCc
Confidence            69999999999999875       8999999999999998764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.7e-38  Score=262.62  Aligned_cols=296  Identities=18%  Similarity=0.267  Sum_probs=241.6

Q ss_pred             ccccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           83 DVNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      .++++.||+..|+++.|.| .+.+|++|+.|+.|+||++....    .+++.+.+|..+|.+++|+++|..+++++.|  
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD--  279 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----RCLRTFKGHRKPVRDASFNNCGTSFLSASFD--  279 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----ceehhhhcchhhhhhhhccccCCeeeeeecc--
Confidence            4789999999999999999 89999999999999999998733    3788899999999999999999999999998  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                       ..+.+|+.+++...                        ..+.....+.++-+.|++...+++|+.|+.|+.||+++++.
T Consensus       280 -~~lKlwDtETG~~~------------------------~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv  334 (503)
T KOG0282|consen  280 -RFLKLWDTETGQVL------------------------SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV  334 (503)
T ss_pred             -eeeeeeccccceEE------------------------EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence             67777777665322                        22233333445556888877999999999999999999999


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      ++.+..|-+.+..+.|-++|+.+++.++|+.++||+.+....       .......+.-...++..+|++.+++.-+.|.
T Consensus       335 vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~-------ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN  407 (503)
T KOG0282|consen  335 VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP-------IKNIADPEMHTMPCLTLHPNGKWFAAQSMDN  407 (503)
T ss_pred             HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc-------chhhcchhhccCcceecCCCCCeehhhccCc
Confidence            999999999999999999999999999999999999876541       1111222333466899999999999999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEI  400 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v  400 (440)
                      .|.++.+.....+...    +     .+....-..--..+.|||||++|++|+ +|.+.+||.++-+++..+ ++|.+.+
T Consensus       408 ~i~ifs~~~~~r~nkk----K-----~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l-kah~~~c  477 (503)
T KOG0282|consen  408 YIAIFSTVPPFRLNKK----K-----RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL-KAHDQPC  477 (503)
T ss_pred             eEEEEecccccccCHh----h-----hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc-ccCCcce
Confidence            9999997754332110    0     111111111234689999999999997 899999999999999999 6999999


Q ss_pred             EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      ..+.|+|..+       ..+||||.||.|++|+
T Consensus       478 i~v~wHP~e~-------Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  478 IGVDWHPVEP-------SKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEEecCCCc-------ceeEecccCceeEecC
Confidence            9999999863       7899999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.3e-35  Score=247.72  Aligned_cols=329  Identities=16%  Similarity=0.269  Sum_probs=246.2

Q ss_pred             CCCCCCCCCCCCCCCcccCccc----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578           62 HSKPHSHSHGDKDQNKRHHPLD----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP  137 (440)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~  137 (440)
                      .++|--..+++.|..+.++.-+    -.+++.|..-|+|++|+|||+++||++.||++.+||=.+++..  ..+....+|
T Consensus       157 psRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v--g~l~~~~aH  234 (603)
T KOG0318|consen  157 PSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV--GELEDSDAH  234 (603)
T ss_pred             CCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE--EEecCCCCc
Confidence            3444445677777766555332    3467789999999999999999999999999999998876532  233335589


Q ss_pred             CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578          138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD  217 (440)
Q Consensus       138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (440)
                      .+.|.+++|+||++.+++++.|   ..+++|+.......             ..|.....-....+..       . .+ 
T Consensus       235 kGsIfalsWsPDs~~~~T~SaD---kt~KIWdVs~~slv-------------~t~~~~~~v~dqqvG~-------l-Wq-  289 (603)
T KOG0318|consen  235 KGSIFALSWSPDSTQFLTVSAD---KTIKIWDVSTNSLV-------------STWPMGSTVEDQQVGC-------L-WQ-  289 (603)
T ss_pred             cccEEEEEECCCCceEEEecCC---ceEEEEEeeccceE-------------EEeecCCchhceEEEE-------E-Ee-
Confidence            9999999999999999999988   67777776554211             1121111111111111       1 12 


Q ss_pred             CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce-----------
Q 013578          218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV-----------  286 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------  286 (440)
                      +. .|++.+.+|+|.+++......+..+.+|...|+++..++++++|++|+.||.|.-|+...+.....           
T Consensus       290 kd-~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~  368 (603)
T KOG0318|consen  290 KD-HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG  368 (603)
T ss_pred             CC-eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE
Confidence            22 799999999999999999999999999999999999999999999999999999999633221100           


Q ss_pred             ------------------e------------------------------------eeeeeeeeeccc--------cceEE
Q 013578          287 ------------------K------------------------------------AVTSVMQLKGHK--------SAVTW  304 (440)
Q Consensus       287 ------------------~------------------------------------~~~~~~~~~~h~--------~~v~~  304 (440)
                                        +                                    ....+..++.+.        -...+
T Consensus       369 ~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~  448 (603)
T KOG0318|consen  369 MAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSA  448 (603)
T ss_pred             EeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccce
Confidence                              0                                    000011122111        23568


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEc
Q 013578          305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSV  383 (440)
Q Consensus       305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~  383 (440)
                      ++++|++..++.|+.|+.|++|.+.......            ......|...++.++||||+.|||+|+ .+.+.+||+
T Consensus       449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e------------e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~  516 (603)
T KOG0318|consen  449 VAVSPDGSEVAVGGQDGKVHVYSLSGDELKE------------EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDV  516 (603)
T ss_pred             EEEcCCCCEEEEecccceEEEEEecCCcccc------------eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEc
Confidence            8999999999999999999999998643321            112235567799999999999999998 799999999


Q ss_pred             CCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       384 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .+.+.......-|...|.+++|+|+.        .++|||+.|-.|.||++....
T Consensus       517 ~s~~~~~~~w~FHtakI~~~aWsP~n--------~~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  517 ASREVKTNRWAFHTAKINCVAWSPNN--------KLVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             ccCceecceeeeeeeeEEEEEeCCCc--------eEEEeccccceEEEEEccChh
Confidence            99987544434599999999999998        899999999999999998754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-35  Score=260.01  Aligned_cols=319  Identities=23%  Similarity=0.355  Sum_probs=242.3

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ..+++.||-+.|.++.|+.|.++|++||.|-++|||.++..+..   ......+|...|.+.-|..+...+.+.+.++  
T Consensus       137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~---~~~~l~gHkd~VvacfF~~~~~~l~tvskdG--  211 (893)
T KOG0291|consen  137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL---FTYALNGHKDYVVACFFGANSLDLYTVSKDG--  211 (893)
T ss_pred             EeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---ceEeccCCCcceEEEEeccCcceEEEEecCc--
Confidence            45788999999999999999999999999999999999876542   3556778999999999999999999999984  


Q ss_pred             ceEEeeccccccc--ccc-----c------cccCCCCCCceeeccccc---------------ccceeEE----------
Q 013578          163 CSLYMYGEEKAIS--TNE-----G------KQQSKLPGPEIKWEHHKV---------------HDKRAIL----------  204 (440)
Q Consensus       163 ~~~~~~~~~~~~~--~~~-----~------~~~~~~~~~~~~~~~~~~---------------~~~~~~~----------  204 (440)
                       .+.+|.......  ...     +      ....+.......|...+.               |....+.          
T Consensus       212 -~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~  290 (893)
T KOG0291|consen  212 -ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG  290 (893)
T ss_pred             -eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence             444444331100  000     0      000000011112211100               0000000          


Q ss_pred             -----------Ee----ecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec
Q 013578          205 -----------TL----FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF  269 (440)
Q Consensus       205 -----------~~----~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  269 (440)
                                 ..    .....+.++..|..+.+.|+.-|.+-||+.++...+...++|...+++++++|||+++++|+.
T Consensus       291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e  370 (893)
T KOG0291|consen  291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE  370 (893)
T ss_pred             EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence                       00    011223445567744444555688999999888888888999999999999999999999999


Q ss_pred             CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccccccc
Q 013578          270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLL  349 (440)
Q Consensus       270 dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  349 (440)
                      ||+|+|||...+-        +..++..|.+.|+.+.|+..|+.+++.|-||+|+.||+....+.       +.+..   
T Consensus       371 DgKVKvWn~~Sgf--------C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf-------RTft~---  432 (893)
T KOG0291|consen  371 DGKVKVWNTQSGF--------CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF-------RTFTS---  432 (893)
T ss_pred             CCcEEEEeccCce--------EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee-------eeecC---
Confidence            9999999997776        89999999999999999999999999999999999999865433       22221   


Q ss_pred             CCCCCeeeeeeEEeCCCCCEEEEec-C-CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC
Q 013578          350 DSNGATLQYDRLSLSSDGKILAATH-G-STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK  427 (440)
Q Consensus       350 ~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg  427 (440)
                         ....+..+++..|.|.++.+|. | -.|++|++++|+++..+ .||+++|.+++|+|.+        ..|+++|.|.
T Consensus       433 ---P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-sGHEgPVs~l~f~~~~--------~~LaS~SWDk  500 (893)
T KOG0291|consen  433 ---PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-SGHEGPVSGLSFSPDG--------SLLASGSWDK  500 (893)
T ss_pred             ---CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh-cCCCCcceeeEEcccc--------CeEEeccccc
Confidence               1234577899999999999887 4 48999999999999999 6999999999999998        8999999999


Q ss_pred             eEEEEeCCCC
Q 013578          428 KVKLWLAPSL  437 (440)
Q Consensus       428 ~i~vw~~~~~  437 (440)
                      +||+|++-..
T Consensus       501 TVRiW~if~s  510 (893)
T KOG0291|consen  501 TVRIWDIFSS  510 (893)
T ss_pred             eEEEEEeecc
Confidence            9999998543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.6e-36  Score=249.98  Aligned_cols=299  Identities=20%  Similarity=0.333  Sum_probs=233.0

Q ss_pred             cCccccccccccCcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCc--ceeeEE-------ecCCCCCCCceEEEcc
Q 013578           79 HHPLDVNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSK--SFKFLR-------INLPPGGPPTAVAFAD  148 (440)
Q Consensus        79 ~~~~~~~~l~~H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~--~~~~~~-------~~~~~~~~v~~v~~~~  148 (440)
                      +....++.+. |+.+|.+.+|+|-.. .+++|+.|-+.++|++......  ....++       ...+....|++++|+.
T Consensus       167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~  245 (524)
T KOG0273|consen  167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN  245 (524)
T ss_pred             ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence            3333445566 999999999999555 8999999999999999752111  000111       1223447899999999


Q ss_pred             CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC
Q 013578          149 NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG  228 (440)
Q Consensus       149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  228 (440)
                      +|..|+++..+   ..+.+|+........-....  .+.....|                      ...|. ++++++-|
T Consensus       246 ~G~~LatG~~~---G~~riw~~~G~l~~tl~~Hk--gPI~slKW----------------------nk~G~-yilS~~vD  297 (524)
T KOG0273|consen  246 DGTLLATGSED---GEARIWNKDGNLISTLGQHK--GPIFSLKW----------------------NKKGT-YILSGGVD  297 (524)
T ss_pred             CCCeEEEeecC---cEEEEEecCchhhhhhhccC--CceEEEEE----------------------cCCCC-EEEeccCC
Confidence            99999999988   46667765443211111110  01111222                      45566 99999999


Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA  308 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (440)
                      +++.+||..+++..+.+..|..+...+.|-.+ ..|++.+.|+.|+++.+....        ++.++.+|.++|.++.|.
T Consensus       298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~--------P~~t~~GH~g~V~alk~n  368 (524)
T KOG0273|consen  298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDR--------PVKTFIGHHGEVNALKWN  368 (524)
T ss_pred             ccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCC--------cceeeecccCceEEEEEC
Confidence            99999999999999999988887666777644 567888999999999986655        788999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC---------EEE-EecCCEE
Q 013578          309 PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK---------ILA-ATHGSTL  378 (440)
Q Consensus       309 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~-~~~~~~i  378 (440)
                      |.+.+|+++|.|++++||.+....+              .+....|...|..+.|+|.|.         .++ ++.|+.|
T Consensus       369 ~tg~LLaS~SdD~TlkiWs~~~~~~--------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV  434 (524)
T KOG0273|consen  369 PTGSLLASCSDDGTLKIWSMGQSNS--------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTV  434 (524)
T ss_pred             CCCceEEEecCCCeeEeeecCCCcc--------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeE
Confidence            9999999999999999999875432              234456777888999999764         344 4669999


Q ss_pred             EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ++||+..+.++..+ ..|..+|.+++|+|++        ++|++|+.||.|.+|+.++++
T Consensus       435 ~lwdv~~gv~i~~f-~kH~~pVysvafS~~g--------~ylAsGs~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  435 KLWDVESGVPIHTL-MKHQEPVYSVAFSPNG--------RYLASGSLDGCVHIWSTKTGK  485 (524)
T ss_pred             EEEEccCCceeEee-ccCCCceEEEEecCCC--------cEEEecCCCCeeEeccccchh
Confidence            99999999999999 5899999999999999        999999999999999998875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.3e-36  Score=226.08  Aligned_cols=248  Identities=21%  Similarity=0.312  Sum_probs=211.6

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      .++.|.+|+++|+++.|+-||+|.+|++.|.+||+|+...+.     +++...+|+..|..++.+.|..           
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----liktYsghG~EVlD~~~s~Dns-----------   72 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----LIKTYSGHGHEVLDAALSSDNS-----------   72 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----eeeeecCCCceeeecccccccc-----------
Confidence            467889999999999999999999999999999999988765     6777888888888877765533           


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                                                                                .+++|+.|..+.+||..+|+.+
T Consensus        73 ----------------------------------------------------------kf~s~GgDk~v~vwDV~TGkv~   94 (307)
T KOG0316|consen   73 ----------------------------------------------------------KFASCGGDKAVQVWDVNTGKVD   94 (307)
T ss_pred             ----------------------------------------------------------ccccCCCCceEEEEEcccCeee
Confidence                                                                      6888999999999999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~  322 (440)
                      +.+.+|...|+.++|+.+...+++|+.|.++++||.+...      ..+++.+....+.|.++..  .+..+++|+.||+
T Consensus        95 Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s------~ePiQildea~D~V~Si~v--~~heIvaGS~DGt  166 (307)
T KOG0316|consen   95 RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS------FEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGT  166 (307)
T ss_pred             eecccccceeeEEEecCcceEEEeccccceeEEEEcccCC------CCccchhhhhcCceeEEEe--cccEEEeeccCCc
Confidence            9999999999999999999999999999999999998754      2367777777889999988  4668999999999


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeE
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEIT  401 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~  401 (440)
                      +|.||++.+.....                .-..+|++++|++|+..+.++. |+.+++.|-.+|+++..+ ++|...-.
T Consensus       167 vRtydiR~G~l~sD----------------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY-kGhkn~ey  229 (307)
T KOG0316|consen  167 VRTYDIRKGTLSSD----------------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY-KGHKNMEY  229 (307)
T ss_pred             EEEEEeecceeehh----------------hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh-ccccccee
Confidence            99999997754311                1123589999999999777765 999999999999999999 58987554


Q ss_pred             EE--EecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          402 CM--AWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       402 ~v--~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      .+  +++...        ..+++|++||.|++||+...
T Consensus       230 kldc~l~qsd--------thV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  230 KLDCCLNQSD--------THVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             eeeeeecccc--------eeEEeccCCceEEEEEeccc
Confidence            44  455544        79999999999999999764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7.5e-36  Score=239.64  Aligned_cols=299  Identities=13%  Similarity=0.137  Sum_probs=230.6

Q ss_pred             ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      +-.+.+|..|+++|.+++.+|+.++++||+.|..-.||++.++.     ......+|...|+++.|+.+|.+|+++..+ 
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----~~~eltgHKDSVt~~~FshdgtlLATGdms-  127 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----FAGELTGHKDSVTCCSFSHDGTLLATGDMS-  127 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----ceeEecCCCCceEEEEEccCceEEEecCCC-
Confidence            45678999999999999999999999999999999999999876     345667899999999999999999999877 


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEE-EeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAIL-TLFGASATYGTADGSTIIASCSEGTDISIWHGKTG  239 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  239 (440)
                        ..+.+|...+.                        +....+. .......+.++|.+. +|+.|+.||.+.+|.+.++
T Consensus       128 --G~v~v~~~stg------------------------~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~  180 (399)
T KOG0296|consen  128 --GKVLVFKVSTG------------------------GEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ  180 (399)
T ss_pred             --ccEEEEEcccC------------------------ceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc
Confidence              34444443332                        1111111 222333444566666 8999999999999999998


Q ss_pred             ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee--------------------------------
Q 013578          240 KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK--------------------------------  287 (440)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------------------------  287 (440)
                      ...+.+.+|..++++=.|.|+|+.++++..||+|++|++.++..-...                                
T Consensus       181 ~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~  260 (399)
T KOG0296|consen  181 ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGV  260 (399)
T ss_pred             ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEE
Confidence            888999999999999999999999999999999999998654310000                                


Q ss_pred             ---eeeeeeeee--------ccccceEEEEEcC---CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCC
Q 013578          288 ---AVTSVMQLK--------GHKSAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNG  353 (440)
Q Consensus       288 ---~~~~~~~~~--------~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (440)
                         ..+.+....        .+...+.|+.+.|   .=.+.|+|+.||+|.|||+.....               ...-.
T Consensus       261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~---------------R~~c~  325 (399)
T KOG0296|consen  261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL---------------RHICE  325 (399)
T ss_pred             ccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh---------------heecc
Confidence               001111111        2344455555555   335678999999999999985422               12224


Q ss_pred             CeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          354 ATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       354 ~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      |...|..+.|-++..+++++.+|.|+.||.++|+++..+ .+|...|.+++.+|+.        ++++|+|.|++.+||+
T Consensus       326 he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y-~GH~~~Il~f~ls~~~--------~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  326 HEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTY-TGHQMGILDFALSPQK--------RLVVTVSDDNTALVFE  396 (399)
T ss_pred             CCCceEEEEEcCcchheeeccCceEEeeeccccceEEEE-ecCchheeEEEEcCCC--------cEEEEecCCCeEEEEe
Confidence            455689999999444455566999999999999999999 6999999999999998        8999999999999999


Q ss_pred             CCC
Q 013578          434 APS  436 (440)
Q Consensus       434 ~~~  436 (440)
                      ++.
T Consensus       397 v~~  399 (399)
T KOG0296|consen  397 VPN  399 (399)
T ss_pred             cCC
Confidence            763

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.1e-36  Score=266.19  Aligned_cols=209  Identities=25%  Similarity=0.401  Sum_probs=187.1

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ..++|.||.++|..++|+|+.++|+++|.|+++|+|.+.+..     +.-...+|..+|..+.|+|.|-           
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-----~~V~y~GH~~PVwdV~F~P~Gy-----------  506 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-----CLVIYKGHLAPVWDVQFAPRGY-----------  506 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccce-----eEEEecCCCcceeeEEecCCce-----------
Confidence            456799999999999999999999999999999999998765     4455668999999999998754           


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                                                                                ++++++.|++.++|......++
T Consensus       507 ----------------------------------------------------------YFatas~D~tArLWs~d~~~Pl  528 (707)
T KOG0263|consen  507 ----------------------------------------------------------YFATASHDQTARLWSTDHNKPL  528 (707)
T ss_pred             ----------------------------------------------------------EEEecCCCceeeeeecccCCch
Confidence                                                                      7888888999999999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~  322 (440)
                      +.+.+|...+.|+.|+|+.+++++|+.|.++++||+..+.        .++.+.||.++|.+++|+|+|++|++|+.||.
T Consensus       529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--------~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~  600 (707)
T KOG0263|consen  529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--------SVRIFTGHKGPVTALAFSPCGRYLASGDEDGL  600 (707)
T ss_pred             hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--------EEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence            9999999999999999999999999999999999998887        78899999999999999999999999999999


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK  387 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~  387 (440)
                      |++||+.++..+.              ...+|...|.++.||.+|..||+|+ |+.|++||+..-.
T Consensus       601 I~iWDl~~~~~v~--------------~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  601 IKIWDLANGSLVK--------------QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             EEEEEcCCCcchh--------------hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            9999999765432              2345567799999999999999876 9999999986543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.3e-35  Score=248.72  Aligned_cols=314  Identities=14%  Similarity=0.207  Sum_probs=226.4

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      .-..|++|+..|.++++.|.|.+|+|||.|.+|++||+.........+..........|.+++|++.+..|++++..   
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~---  235 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS---  235 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC---
Confidence            34568899999999999999999999999999999999876544322222333345789999999999999988766   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce-
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL-  241 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-  241 (440)
                      ....+++........-.+..    .........++|.......       .+.|+.+..+++|+.||++|+||+...+. 
T Consensus       236 aqakl~DRdG~~~~e~~KGD----QYI~Dm~nTKGHia~lt~g-------~whP~~k~~FlT~s~DgtlRiWdv~~~k~q  304 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGD----QYIRDMYNTKGHIAELTCG-------CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ  304 (641)
T ss_pred             cceeEEccCCceeeeeeccc----hhhhhhhccCCceeeeecc-------ccccCcccceEEecCCCcEEEEecCCchhh
Confidence            33444444333211111111    1112223334444333333       34788888999999999999999976532 


Q ss_pred             eeeee-----CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc--ceEEEEEcCCCCEE
Q 013578          242 LGNVD-----TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS--AVTWLCFAPNSEQI  314 (440)
Q Consensus       242 ~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l  314 (440)
                      +..+.     +...+++.++|+++|++||+|+.||.|.+|+......   .  .....-.+|..  .|+||.||++|++|
T Consensus       305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v---~--p~~~vk~AH~~g~~Itsi~FS~dg~~L  379 (641)
T KOG0772|consen  305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV---R--PVMKVKDAHLPGQDITSISFSYDGNYL  379 (641)
T ss_pred             eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc---c--cceEeeeccCCCCceeEEEeccccchh
Confidence            22222     2345678899999999999999999999999743321   1  12333456776  89999999999999


Q ss_pred             EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-------CCEEEEEEcCCcc
Q 013578          315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-------GSTLQWLSVETGK  387 (440)
Q Consensus       315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~i~i~d~~~~~  387 (440)
                      ++-+.|+++++||++.....-.      .     ...-.....-+.++|||+.+++++|.       .+.+++||..+-+
T Consensus       380 lSRg~D~tLKvWDLrq~kkpL~------~-----~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d  448 (641)
T KOG0772|consen  380 LSRGFDDTLKVWDLRQFKKPLN------V-----RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD  448 (641)
T ss_pred             hhccCCCceeeeeccccccchh------h-----hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence            9999999999999996533111      0     01111122345699999999999874       2789999999999


Q ss_pred             chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       388 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      .+..+. -....|..+.|+|.-        ++|+.|+.||+++||--+
T Consensus       449 ~v~ki~-i~~aSvv~~~WhpkL--------NQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  449 TVYKID-ISTASVVRCLWHPKL--------NQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             eEEEec-CCCceEEEEeecchh--------hheeeecCCCceEEEECc
Confidence            988884 557789999999998        789999999999997543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.8e-35  Score=252.25  Aligned_cols=287  Identities=30%  Similarity=0.519  Sum_probs=230.4

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      ++++++|.++|++++|+|++++|++++.||.+++|++.+..     .......|...+..+.|+++++.+++++.+   .
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~   73 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLASGSSD---K   73 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEEEcCC---C
Confidence            46788999999999999999999999999999999998764     233344566788899999999999988876   4


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                      .+.+|+........             .+.   .+..       ....+.+.+++. ++++++.++.|++||+.+++...
T Consensus        74 ~i~i~~~~~~~~~~-------------~~~---~~~~-------~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~  129 (289)
T cd00200          74 TIRLWDLETGECVR-------------TLT---GHTS-------YVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLT  129 (289)
T ss_pred             eEEEEEcCcccceE-------------EEe---ccCC-------cEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEE
Confidence            66677655421000             000   0110       112223355555 78888889999999999888888


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL  323 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i  323 (440)
                      .+..|...+.+++|+|++.++++++.++.|++||++..+        ....+..|...|.++.|+|+++.+++++.|+.|
T Consensus       130 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  201 (289)
T cd00200         130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI  201 (289)
T ss_pred             EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc--------cceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence            888888899999999999999988889999999997554        456677888899999999999999999999999


Q ss_pred             EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEE
Q 013578          324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITC  402 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~  402 (440)
                      ++||++.......              ...+...+.++.|+|++.++++++ ++.+++|+..+++....+. .|...|.+
T Consensus       202 ~i~d~~~~~~~~~--------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~  266 (289)
T cd00200         202 KLWDLSTGKCLGT--------------LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTS  266 (289)
T ss_pred             EEEECCCCceecc--------------hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEE
Confidence            9999986433211              113344688999999999999888 9999999999998888874 89999999


Q ss_pred             EEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          403 MAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       403 v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      ++|+|++        .+|++++.||.+++|+
T Consensus       267 ~~~~~~~--------~~l~~~~~d~~i~iw~  289 (289)
T cd00200         267 LAWSPDG--------KRLASGSADGTIRIWD  289 (289)
T ss_pred             EEECCCC--------CEEEEecCCCeEEecC
Confidence            9999997        7999999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.1e-34  Score=243.55  Aligned_cols=299  Identities=18%  Similarity=0.275  Sum_probs=234.0

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC-c
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS-G  162 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~-~  162 (440)
                      ...+.+|..+++-..|||.|.|+|+|...|+|||||....+..   +...+....++|..++|+.+++++++.+.... -
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hi---LKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf  128 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHI---LKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF  128 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCccee---eeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence            5678899999999999999999999999999999998764321   22223345589999999999999998875532 2


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ..+.+|+.....-.                  ..+|.+.+....+       -|.-...+++|++|++|.+|+-...+..
T Consensus       129 g~~F~~DSG~SvGe------------------i~GhSr~ins~~~-------KpsRPfRi~T~sdDn~v~ffeGPPFKFk  183 (603)
T KOG0318|consen  129 GHVFLWDSGNSVGE------------------ITGHSRRINSVDF-------KPSRPFRIATGSDDNTVAFFEGPPFKFK  183 (603)
T ss_pred             eEEEEecCCCccce------------------eeccceeEeeeec-------cCCCceEEEeccCCCeEEEeeCCCeeee
Confidence            34566665543211                  1222222222222       3444458999999999999998888888


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee---ccccceEEEEEcCCCCEEEEEeC
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK---GHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      .++..|..-|.|+.|+|||.+|++++.||+|.+||-.++.        .+..+.   +|++.|.+++|+||+..|+|++.
T Consensus       184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge--------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa  255 (603)
T KOG0318|consen  184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE--------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSA  255 (603)
T ss_pred             ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc--------EEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence            8889999999999999999999999999999999976665        455555   89999999999999999999999


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCC
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGE  399 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~  399 (440)
                      |.+++|||+.+..+..+.....+          -....+ .+-|- .+.++.+..+|.|.+++...+..+..+ .+|...
T Consensus       256 Dkt~KIWdVs~~slv~t~~~~~~----------v~dqqv-G~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i-~GHnK~  322 (603)
T KOG0318|consen  256 DKTIKIWDVSTNSLVSTWPMGST----------VEDQQV-GCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVI-SGHNKS  322 (603)
T ss_pred             CceEEEEEeeccceEEEeecCCc----------hhceEE-EEEEe-CCeEEEEEcCcEEEEecccCCChhhee-cccccc
Confidence            99999999998765433221111          111222 34444 666777778999999999999988877 699999


Q ss_pred             eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          400 ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       400 v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      |+++..+|++        .+|++|+.||.|.-|+..++.+
T Consensus       323 ITaLtv~~d~--------~~i~SgsyDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  323 ITALTVSPDG--------KTIYSGSYDGHINSWDSGSGTS  354 (603)
T ss_pred             eeEEEEcCCC--------CEEEeeccCceEEEEecCCccc
Confidence            9999999998        8999999999999999988765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.6e-35  Score=224.54  Aligned_cols=293  Identities=17%  Similarity=0.224  Sum_probs=232.6

Q ss_pred             CCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578           66 HSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP  141 (440)
Q Consensus        66 ~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v  141 (440)
                      -..++++.|.++|+|..    +.++++-..+.|+.+...||++.||+++.- .||+||+.+....   ....+.+|...|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~---Pv~t~e~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN---PVATFEGHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC---ceeEEeccCCce
Confidence            34578889999999964    677888778899999999999999999865 6999999988764   344556788899


Q ss_pred             ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578          142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI  221 (440)
Q Consensus       142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (440)
                      +++.|..+|+++++++.|   +.+++|+.........                        +........++..|+ +..
T Consensus        87 taVgF~~dgrWMyTgseD---gt~kIWdlR~~~~qR~------------------------~~~~spVn~vvlhpn-Qte  138 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSED---GTVKIWDLRSLSCQRN------------------------YQHNSPVNTVVLHPN-QTE  138 (311)
T ss_pred             EEEEEeecCeEEEecCCC---ceEEEEeccCcccchh------------------------ccCCCCcceEEecCC-cce
Confidence            999999999999999988   5677776655322111                        111111222222444 348


Q ss_pred             EEEeeCCceEEEEeCCCCceeeeee-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          222 IASCSEGTDISIWHGKTGKLLGNVD-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      |++|..+|.|++||+.+..+...+- .....+.++.+.|||.+++.+...|++++|++-...  ....+.++..++.|.+
T Consensus       139 Lis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~--~~s~l~P~~k~~ah~~  216 (311)
T KOG0315|consen  139 LISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ--TASELEPVHKFQAHNG  216 (311)
T ss_pred             EEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC--ccccceEhhheecccc
Confidence            9999999999999999887665553 345678999999999999999999999999986633  2344567888999999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQ  379 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~  379 (440)
                      -+..+.+||++++|+++|.|.+++||+.++...             ......+|...+..++||.||+||++++ |+.++
T Consensus       217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k-------------le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~r  283 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK-------------LELVLTGHQRWVWDCAFSADGEYLVTASSDHTAR  283 (311)
T ss_pred             eEEEEEECCCCcEEEeecCCceEEEEecCCcee-------------eEEEeecCCceEEeeeeccCccEEEecCCCCcee
Confidence            999999999999999999999999999985411             1223457778899999999999999976 89999


Q ss_pred             EEEcCCccchhhhhccccCCeEEEEec
Q 013578          380 WLSVETGKVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       380 i~d~~~~~~~~~~~~~h~~~v~~v~~~  406 (440)
                      +|++..++.+... .+|.....|++..
T Consensus       284 lW~~~~~k~v~qy-~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  284 LWDLSAGKEVRQY-QGHHKAAVCVALN  309 (311)
T ss_pred             ecccccCceeeec-CCcccccEEEEee
Confidence            9999999999888 5888888777754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.1e-36  Score=262.02  Aligned_cols=343  Identities=20%  Similarity=0.297  Sum_probs=254.1

Q ss_pred             CCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCC--EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC
Q 013578           66 HSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGK--CLATACADGVIRVHKLDDASSKSFKFLRINLPPGG  139 (440)
Q Consensus        66 ~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~--~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~  139 (440)
                      ...++++.|+..+.|+.    +++.|+||.+.|.++.|+|+-+  .|++|..|+++++||+.+...    +......|.+
T Consensus       118 ~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----cl~~~~~H~S  193 (775)
T KOG0319|consen  118 TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----CLHTMILHKS  193 (775)
T ss_pred             ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch----HHHHHHhhhh
Confidence            56788899999999976    5889999999999999999765  589999999999999986543    3455667889


Q ss_pred             CCceEEEccCCCeEEEEeecCCcceEEeeccccccc--------------------------------------------
Q 013578          140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS--------------------------------------------  175 (440)
Q Consensus       140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------  175 (440)
                      .|++++|++|+..+++++.|   ..+.+|+......                                            
T Consensus       194 ~vtsL~~~~d~~~~ls~~RD---kvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~  270 (775)
T KOG0319|consen  194 AVTSLAFSEDSLELLSVGRD---KVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG  270 (775)
T ss_pred             heeeeeeccCCceEEEeccC---cEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence            99999999999999999887   3444444322110                                            


Q ss_pred             --ccccccc-C-CCCC-----------------Cceeecccc--------------------------------------
Q 013578          176 --TNEGKQQ-S-KLPG-----------------PEIKWEHHK--------------------------------------  196 (440)
Q Consensus       176 --~~~~~~~-~-~~~~-----------------~~~~~~~~~--------------------------------------  196 (440)
                        .....++ . ++..                 ..+.++...                                      
T Consensus       271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~  350 (775)
T KOG0319|consen  271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL  350 (775)
T ss_pred             hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence              0000000 0 0000                 000000000                                      


Q ss_pred             ----cccceeEEEeeccccccc-CCCCCeEEEEeeCCceEEEEeCCCC----ceeeeeeCCCCcccEEEecCCC-CeEEE
Q 013578          197 ----VHDKRAILTLFGASATYG-TADGSTIIASCSEGTDISIWHGKTG----KLLGNVDTNQLKNNMAAISPNG-RFLAA  266 (440)
Q Consensus       197 ----~~~~~~~~~~~~~~~~~~-~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~  266 (440)
                          .....++.++........ ..+|. +|++|+.|+++++|.++++    .++....+|...|.+++++..+ .+|++
T Consensus       351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvs  429 (775)
T KOG0319|consen  351 YTLPTSYCQIIPGHTEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVS  429 (775)
T ss_pred             EecCCCceEEEeCchhheeeeeecccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEE
Confidence                000001111111111111 23443 9999999999999977443    3456678899999999997754 68999


Q ss_pred             EecCCCEEEEEeEecCCCce-eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc
Q 013578          267 AAFTADVKVWEIVYSKDGLV-KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP  345 (440)
Q Consensus       267 ~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  345 (440)
                      ++.|+++++|++...++... ...........|...|+|++++|+..++||||.|.+.+||+++....            
T Consensus       430 vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l------------  497 (775)
T KOG0319|consen  430 VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL------------  497 (775)
T ss_pred             ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceE------------
Confidence            99999999999976332221 11122234567999999999999999999999999999999984432            


Q ss_pred             ccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee
Q 013578          346 IPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS  424 (440)
Q Consensus       346 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~  424 (440)
                        .....+|...|.++.|+|..+.||+++ |.+|+||.+.+..++.++ .||+..|..+.|-.++        .+|++++
T Consensus       498 --~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-eGH~~aVlra~F~~~~--------~qliS~~  566 (775)
T KOG0319|consen  498 --LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-EGHTSAVLRASFIRNG--------KQLISAG  566 (775)
T ss_pred             --EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-cCccceeEeeeeeeCC--------cEEEecc
Confidence              234568888999999999999999976 899999999999999999 5999999999999998        8999999


Q ss_pred             CCCeEEEEeCCCCCC
Q 013578          425 VDKKVKLWLAPSLES  439 (440)
Q Consensus       425 ~Dg~i~vw~~~~~~~  439 (440)
                      .||.+++|++.+.+|
T Consensus       567 adGliKlWnikt~eC  581 (775)
T KOG0319|consen  567 ADGLIKLWNIKTNEC  581 (775)
T ss_pred             CCCcEEEEeccchhh
Confidence            999999999999887

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.5e-34  Score=261.32  Aligned_cols=263  Identities=29%  Similarity=0.481  Sum_probs=216.8

Q ss_pred             CcccCcccccccccc-CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEE
Q 013578           76 NKRHHPLDVNTLKGH-GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIV  154 (440)
Q Consensus        76 ~~~~~~~~~~~l~~H-~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~  154 (440)
                      ..+.+.. ...+.+| ...|.++.|+++|++|++++.|+.+++|+......   .......+|...|..++|+|+++   
T Consensus       144 ~~~~~~~-~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~~~~fs~d~~---  216 (456)
T KOG0266|consen  144 SSRVFSL-EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---NLLRELSGHTRGVSDVAFSPDGS---  216 (456)
T ss_pred             cccccee-eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---hhhccccccccceeeeEECCCCc---
Confidence            3344444 5666665 88999999999999999999999999999965442   12333467889999999998876   


Q ss_pred             EEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEE
Q 013578          155 VATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIW  234 (440)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vw  234 (440)
                                                                                        ++++++.|++|++|
T Consensus       217 ------------------------------------------------------------------~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  217 ------------------------------------------------------------------YLLSGSDDKTLRIW  230 (456)
T ss_pred             ------------------------------------------------------------------EEEEecCCceEEEe
Confidence                                                                              68888999999999


Q ss_pred             eC-CCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE
Q 013578          235 HG-KTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ  313 (440)
Q Consensus       235 d~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  313 (440)
                      |+ ..+..++.+.+|...|++++|+|+++++++|+.|++|+|||++.++        +...+.+|.+.|++++|++++.+
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--------~~~~l~~hs~~is~~~f~~d~~~  302 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--------CVRKLKGHSDGISGLAFSPDGNL  302 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe--------EEEeeeccCCceEEEEECCCCCE
Confidence            99 5568899999999999999999999999999999999999998765        88899999999999999999999


Q ss_pred             EEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhh
Q 013578          314 IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTA  392 (440)
Q Consensus       314 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~  392 (440)
                      |++++.|+.|++||+.++...     ....    ........ .++.+.|+|++++++++. |+.+++||+..+..+...
T Consensus       303 l~s~s~d~~i~vwd~~~~~~~-----~~~~----~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  303 LVSASYDGTIRVWDLETGSKL-----CLKL----LSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             EEEcCCCccEEEEECCCCcee-----eeec----ccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence            999999999999999987621     0000    11111222 588999999999999877 779999999999998888


Q ss_pred             hccccCC---eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          393 EKAHEGE---ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       393 ~~~h~~~---v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                       .+|...   +.+...++.+        .++++|+.|+.|.+|++.++.
T Consensus       373 -~~~~~~~~~~~~~~~~~~~--------~~i~sg~~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  373 -TGHSNLVRCIFSPTLSTGG--------KLIYSGSEDGSVYVWDSSSGG  412 (456)
T ss_pred             -cccCCcceeEecccccCCC--------CeEEEEeCCceEEEEeCCccc
Confidence             477664   3444556666        899999999999999998754

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3e-34  Score=259.33  Aligned_cols=269  Identities=23%  Similarity=0.395  Sum_probs=224.7

Q ss_pred             CCCCCCCCCcccCcc------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578           68 HSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP  141 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v  141 (440)
                      .+.+..++..++|..      ..+.+.+|...|++++|+|||+++++|+.|++|+|||+....    ...+...+|...|
T Consensus       174 l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~----~~~~~l~gH~~~v  249 (456)
T KOG0266|consen  174 LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG----RNLKTLKGHSTYV  249 (456)
T ss_pred             EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC----eEEEEecCCCCce
Confidence            344556677777766      677889999999999999999999999999999999994332    2556677999999


Q ss_pred             ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578          142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI  221 (440)
Q Consensus       142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (440)
                      ++++|+|+++                                                                     +
T Consensus       250 ~~~~f~p~g~---------------------------------------------------------------------~  260 (456)
T KOG0266|consen  250 TSVAFSPDGN---------------------------------------------------------------------L  260 (456)
T ss_pred             EEEEecCCCC---------------------------------------------------------------------E
Confidence            9999998764                                                                     7


Q ss_pred             EEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578          222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA  301 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~  301 (440)
                      +++|+.|++|++||+++++++..+..|...|++++|++++++|++++.|+.|++||+..+..    .  +...+.++...
T Consensus       261 i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~----~--~~~~~~~~~~~  334 (456)
T KOG0266|consen  261 LVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK----L--CLKLLSGAENS  334 (456)
T ss_pred             EEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce----e--eeecccCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999976641    0  23455555554


Q ss_pred             --eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578          302 --VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL  378 (440)
Q Consensus       302 --v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i  378 (440)
                        ++++.|+|++.+|++++.|+.+++||++.............         .  ...+.+...++.++++++|. |+.|
T Consensus       335 ~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~~~i~sg~~d~~v  403 (456)
T KOG0266|consen  335 APVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN---------L--VRCIFSPTLSTGGKLIYSGSEDGSV  403 (456)
T ss_pred             CceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC---------c--ceeEecccccCCCCeEEEEeCCceE
Confidence              99999999999999999999999999997655432111110         0  13355666788999999987 8999


Q ss_pred             EEEEcCCccchhhhhccc-cCCeEEEEecCCCCCCCCCcceEEEEee--CCCeEEEEeCC
Q 013578          379 QWLSVETGKVLDTAEKAH-EGEITCMAWAPKTIPMGNQQVSVLATSS--VDKKVKLWLAP  435 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~~~~~~~~l~t~~--~Dg~i~vw~~~  435 (440)
                      ++||..++..+..+ .+| ...+..+.|+|..        .++++++  .|+.+++|..+
T Consensus       404 ~~~~~~s~~~~~~l-~~h~~~~~~~~~~~~~~--------~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  404 YVWDSSSGGILQRL-EGHSKAAVSDLSSHPTE--------NLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEEeCCccchhhhh-cCCCCCceeccccCCCc--------CeeeecCcCCCceEEEecCC
Confidence            99999999999998 489 8899999999998        8899888  69999999865

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.2e-35  Score=255.77  Aligned_cols=252  Identities=21%  Similarity=0.321  Sum_probs=215.1

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS  164 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~  164 (440)
                      +.+.||++.|.+++...+|-+|+|||.|.++++|.++.+. ....+.....+|.+.|.+++++..+.             
T Consensus       359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~-~~~~~~a~~~gH~~svgava~~~~~a-------------  424 (775)
T KOG0319|consen  359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC-SKSLCVAQANGHTNSVGAVAGSKLGA-------------  424 (775)
T ss_pred             EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCc-chhhhhhhhcccccccceeeecccCc-------------
Confidence            4688999999999977788999999999999999995443 23334555677888898888843321             


Q ss_pred             EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce---
Q 013578          165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL---  241 (440)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---  241 (440)
                                                                             .+|++++.|+++++|++...+.   
T Consensus       425 -------------------------------------------------------sffvsvS~D~tlK~W~l~~s~~~~~  449 (775)
T KOG0319|consen  425 -------------------------------------------------------SFFVSVSQDCTLKLWDLPKSKETAF  449 (775)
T ss_pred             -------------------------------------------------------cEEEEecCCceEEEecCCCcccccc
Confidence                                                                   1899999999999999875221   


Q ss_pred             --e----eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578          242 --L----GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       242 --~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  315 (440)
                        +    .....|...|+|++++|+.+++|+|+.|.+.+||++....        ....+.||...|+++.|+|..+.++
T Consensus       450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~--------l~~vLsGH~RGvw~V~Fs~~dq~la  521 (775)
T KOG0319|consen  450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR--------LLGVLSGHTRGVWCVSFSKNDQLLA  521 (775)
T ss_pred             cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce--------EEEEeeCCccceEEEEeccccceeE
Confidence              1    1234688999999999999999999999999999997443        7889999999999999999999999


Q ss_pred             EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhc
Q 013578          316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEK  394 (440)
Q Consensus       316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~  394 (440)
                      |+|.|++|+||.+.+..|++              ...||...|..+.|-.+|+.|+++ +||.+++|++++++++..+ .
T Consensus       522 T~SgD~TvKIW~is~fSClk--------------T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl-D  586 (775)
T KOG0319|consen  522 TCSGDKTVKIWSISTFSCLK--------------TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL-D  586 (775)
T ss_pred             eccCCceEEEEEeccceeee--------------eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh-h
Confidence            99999999999999876643              346888999999999999988874 5999999999999999999 6


Q ss_pred             cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       395 ~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +|.+.|++++-++..        .+++||+.||.|.+|.=.+
T Consensus       587 ~H~DrvWaL~~~~~~--------~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  587 AHNDRVWALSVSPLL--------DMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             hccceeEEEeecCcc--------ceeEecCCCeEEEEeecCc
Confidence            999999999999998        8999999999999997544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.9e-34  Score=248.79  Aligned_cols=305  Identities=19%  Similarity=0.322  Sum_probs=228.4

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      +...+||...++|++++|||+++|||+.||.|+|||...+-     ++..+..|...|+.+.|+.+++.+++++.|   .
T Consensus       343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~~~g~~llssSLD---G  414 (893)
T KOG0291|consen  343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFTARGNVLLSSSLD---G  414 (893)
T ss_pred             eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-----EEEEeccCCCceEEEEEEecCCEEEEeecC---C
Confidence            34467999999999999999999999999999999998764     667888999999999999999999999988   4


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC-ceEEEEeCCCCcee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG-TDISIWHGKTGKLL  242 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~vwd~~~~~~~  242 (440)
                      .++.|+..+.........+.                      .....++...|.|. ++++|+.| -.|.+|++++|+.+
T Consensus       415 tVRAwDlkRYrNfRTft~P~----------------------p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGqll  471 (893)
T KOG0291|consen  415 TVRAWDLKRYRNFRTFTSPE----------------------PIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQLL  471 (893)
T ss_pred             eEEeeeecccceeeeecCCC----------------------ceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCeee
Confidence            55666655442211111110                      11223344466677 66666665 45999999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~  322 (440)
                      -.+.+|+++|.+++|+|.+..|++|+.|.+|++||+-....       .+.++. +...+..++|+|+|+.|++++.||.
T Consensus       472 DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-------~vEtl~-i~sdvl~vsfrPdG~elaVaTldgq  543 (893)
T KOG0291|consen  472 DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-------TVETLE-IRSDVLAVSFRPDGKELAVATLDGQ  543 (893)
T ss_pred             ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc-------eeeeEe-eccceeEEEEcCCCCeEEEEEecce
Confidence            99999999999999999999999999999999999865431       233333 6678999999999999999999999


Q ss_pred             EEEEecCccccccCCCCcc-----cc-ccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhh--
Q 013578          323 LRVWNINVRYHLDEDPKTL-----KV-LPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAE--  393 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~--  393 (440)
                      |.+||.+...+........     +. ..............++.+++|+||.++++|. .+.|++|++.++-+++.++  
T Consensus       544 Itf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS  623 (893)
T KOG0291|consen  544 ITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQIS  623 (893)
T ss_pred             EEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEec
Confidence            9999998765542211110     00 0111112223345688999999999887755 7899999998775544332  


Q ss_pred             ---------------------------c-----------------------cc---cCCeEEEEecCCCCCCCCCcceEE
Q 013578          394 ---------------------------K-----------------------AH---EGEITCMAWAPKTIPMGNQQVSVL  420 (440)
Q Consensus       394 ---------------------------~-----------------------~h---~~~v~~v~~~~~~~~~~~~~~~~l  420 (440)
                                                 .                       .+   .-.|.++.|+|.+        +-+
T Consensus       624 ~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtg--------raF  695 (893)
T KOG0291|consen  624 DNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTG--------RAF  695 (893)
T ss_pred             cccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCc--------Cee
Confidence                                       0                       00   1147899999998        889


Q ss_pred             EEeeCCCeEEEEeCCC
Q 013578          421 ATSSVDKKVKLWLAPS  436 (440)
Q Consensus       421 ~t~~~Dg~i~vw~~~~  436 (440)
                      +.++..| +.||.+.+
T Consensus       696 AaatTEG-l~IYsld~  710 (893)
T KOG0291|consen  696 AAATTEG-LLIYSLDT  710 (893)
T ss_pred             eeecccc-eEEEecCC
Confidence            9999888 77887754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-34  Score=246.23  Aligned_cols=249  Identities=17%  Similarity=0.323  Sum_probs=215.0

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS  164 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~  164 (440)
                      +.+..|+..|.++.|+|...+++++-.+|.|.|||.++..     ..+...-.+-+|.+..|.+..+             
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-----mVksfeV~~~PvRa~kfiaRkn-------------   68 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-----MVKSFEVSEVPVRAAKFIARKN-------------   68 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce-----eeeeeeecccchhhheeeeccc-------------
Confidence            4566799999999999999999999999999999998764     2233333345666666654322             


Q ss_pred             EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee
Q 013578          165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN  244 (440)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  244 (440)
                                                                              .+++|++|..|++|+..+++.+..
T Consensus        69 --------------------------------------------------------Wiv~GsDD~~IrVfnynt~ekV~~   92 (794)
T KOG0276|consen   69 --------------------------------------------------------WIVTGSDDMQIRVFNYNTGEKVKT   92 (794)
T ss_pred             --------------------------------------------------------eEEEecCCceEEEEecccceeeEE
Confidence                                                                    788999999999999999999999


Q ss_pred             eeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCcE
Q 013578          245 VDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTL  323 (440)
Q Consensus       245 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i  323 (440)
                      +..|...|+|++.+|...++++++.|-.|++||..       ..+.+.+.+.||..-|.+++|.| |.+.++++|-|++|
T Consensus        93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we-------~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV  165 (794)
T KOG0276|consen   93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE-------NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV  165 (794)
T ss_pred             eeccccceeeeeecCCCCeEEecCCccEEEEeecc-------CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence            99999999999999999999999999999999985       34568899999999999999999 55689999999999


Q ss_pred             EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC--CEEEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578          324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG--KILAATH-GSTLQWLSVETGKVLDTAEKAHEGEI  400 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v  400 (440)
                      ++|.+....              +.++..+|...|+++.+-+.|  .+|++|. |..++|||.++..++++++ ||...|
T Consensus       166 KVWslgs~~--------------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nv  230 (794)
T KOG0276|consen  166 KVWSLGSPH--------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNV  230 (794)
T ss_pred             EEEEcCCCC--------------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccc
Confidence            999998532              234556888999999998866  4888875 7899999999999999995 999999


Q ss_pred             EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ..+.|+|.-        .+++|||+||++|||+-.+-
T Consensus       231 s~v~fhp~l--------piiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  231 SFVFFHPEL--------PIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             eEEEecCCC--------cEEEEecCCccEEEecCcce
Confidence            999999998        79999999999999997764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2e-35  Score=235.89  Aligned_cols=251  Identities=20%  Similarity=0.360  Sum_probs=207.0

Q ss_pred             CCCcccCccccccccc---cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCC
Q 013578           74 DQNKRHHPLDVNTLKG---HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNA  150 (440)
Q Consensus        74 ~~~~~~~~~~~~~l~~---H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~  150 (440)
                      +.+++.....+.++..   ....|.|+.+  |...+++|..|++|+|||..+..     +.....+|.+.|.|+.|... 
T Consensus       177 dsNWr~Gr~~~~rinc~Se~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~-----c~~~L~GHtGSVLCLqyd~r-  248 (499)
T KOG0281|consen  177 ESNWRCGRHLLQRINCRSENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLE-----CLKILTGHTGSVLCLQYDER-  248 (499)
T ss_pred             hcchhccceeeeeecCCcccCCceEEEEe--cchhhhcccccCceEEeccccHH-----HHHhhhcCCCcEEeeeccce-
Confidence            3444444444444443   3578999999  55689999999999999988654     55677899999999888532 


Q ss_pred             CeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce
Q 013578          151 TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD  230 (440)
Q Consensus       151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  230 (440)
                                                                                            .+++|+.|.+
T Consensus       249 ----------------------------------------------------------------------viisGSSDsT  258 (499)
T KOG0281|consen  249 ----------------------------------------------------------------------VIVSGSSDST  258 (499)
T ss_pred             ----------------------------------------------------------------------EEEecCCCce
Confidence                                                                                  7899999999


Q ss_pred             EEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC
Q 013578          231 ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN  310 (440)
Q Consensus       231 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~  310 (440)
                      |++||.++++++.++-.|...|..+.|+  ..++++++.|..|.+||+....+     ..+...+.||...|+.+.|  +
T Consensus       259 vrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~-----it~rrVLvGHrAaVNvVdf--d  329 (499)
T KOG0281|consen  259 VRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD-----ITLRRVLVGHRAAVNVVDF--D  329 (499)
T ss_pred             EEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH-----HHHHHHHhhhhhheeeecc--c
Confidence            9999999999999999999999999987  46899999999999999976542     2256678899999999999  5


Q ss_pred             CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccch
Q 013578          311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVL  389 (440)
Q Consensus       311 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~  389 (440)
                      .+++++++.|.+|++|++.+...+.              ...+|...|.|+.+  .|+++++|+ |.+|++||++.|.++
T Consensus       330 ~kyIVsASgDRTikvW~~st~efvR--------------tl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL  393 (499)
T KOG0281|consen  330 DKYIVSASGDRTIKVWSTSTCEFVR--------------TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL  393 (499)
T ss_pred             cceEEEecCCceEEEEeccceeeeh--------------hhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHH
Confidence            6699999999999999999876542              23456665655554  688888876 999999999999999


Q ss_pred             hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          390 DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       390 ~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ..++ ||+.-|.++.|...          .+++|+.||+|+|||+..++
T Consensus       394 RvLe-GHEeLvRciRFd~k----------rIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  394 RVLE-GHEELVRCIRFDNK----------RIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             HHHh-chHHhhhheeecCc----------eeeeccccceEEEEeccccc
Confidence            9994 99999999999874          79999999999999998754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8.4e-35  Score=232.38  Aligned_cols=254  Identities=19%  Similarity=0.335  Sum_probs=212.1

Q ss_pred             CCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578           69 SHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV  144 (440)
Q Consensus        69 ~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v  144 (440)
                      .++..|.++++|+.    +++.|.||++.|.|+.|  |.+.|++||.|.+|+|||+++++.     +.....|...|..+
T Consensus       211 VSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~-----l~tlihHceaVLhl  283 (499)
T KOG0281|consen  211 VSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEP-----LNTLIHHCEAVLHL  283 (499)
T ss_pred             hcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCch-----hhHHhhhcceeEEE
Confidence            56778888998876    57889999999999999  677999999999999999999873     45667777888888


Q ss_pred             EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578          145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS  224 (440)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  224 (440)
                      .|+..                                                                       ++++
T Consensus       284 rf~ng-----------------------------------------------------------------------~mvt  292 (499)
T KOG0281|consen  284 RFSNG-----------------------------------------------------------------------YMVT  292 (499)
T ss_pred             EEeCC-----------------------------------------------------------------------EEEE
Confidence            88643                                                                       8999


Q ss_pred             eeCCceEEEEeCCCCc---eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578          225 CSEGTDISIWHGKTGK---LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA  301 (440)
Q Consensus       225 ~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~  301 (440)
                      ++.|.++.+||+....   +.+.+.+|...|+.+.|+  .+++++++.|.+|++|++.+..        .+..+.+|+..
T Consensus       293 cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e--------fvRtl~gHkRG  362 (499)
T KOG0281|consen  293 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE--------FVRTLNGHKRG  362 (499)
T ss_pred             ecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee--------eehhhhccccc
Confidence            9999999999998654   335567899999988886  4599999999999999997765        89999999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEE
Q 013578          302 VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQW  380 (440)
Q Consensus       302 v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i  380 (440)
                      |.|+.+  .++++++|+.|.+|++||++.+.++.              ...||+.-|.++.|.  .+.+++ +.||.|++
T Consensus       363 IAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR--------------vLeGHEeLvRciRFd--~krIVSGaYDGkikv  424 (499)
T KOG0281|consen  363 IACLQY--RDRLVVSGSSDNTIRLWDIECGACLR--------------VLEGHEELVRCIRFD--NKRIVSGAYDGKIKV  424 (499)
T ss_pred             ceehhc--cCeEEEecCCCceEEEEeccccHHHH--------------HHhchHHhhhheeec--CceeeeccccceEEE
Confidence            999988  78999999999999999999887652              234777778889884  445555 55999999


Q ss_pred             EEcCCccc---------hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          381 LSVETGKV---------LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       381 ~d~~~~~~---------~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      ||+.++..         +..+ ..|.+.|..+.|..          ..+++++-|.+|.|||+.++.+
T Consensus       425 Wdl~aaldpra~~~~~Cl~~l-v~hsgRVFrLQFD~----------fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  425 WDLQAALDPRAPASTLCLRTL-VEHSGRVFRLQFDE----------FQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             EecccccCCcccccchHHHhh-hhccceeEEEeecc----------eEEEeccCCCeEEEEEcCCCCc
Confidence            99987643         3344 46999999999987          5799999999999999987654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7e-34  Score=252.52  Aligned_cols=306  Identities=16%  Similarity=0.254  Sum_probs=201.3

Q ss_pred             cccc-ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeE-----EecCCCCCCCceEEEcc---CCCeEEE
Q 013578           85 NTLK-GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL-----RINLPPGGPPTAVAFAD---NATSIVV  155 (440)
Q Consensus        85 ~~l~-~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~-----~~~~~~~~~v~~v~~~~---~~~~l~~  155 (440)
                      +.+. +|.++|+++.||+||+|||+||.||.||||.+...+.......     .......+.+..+.-++   .++....
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            4456 8999999999999999999999999999999876321100000     00000001111111111   0111111


Q ss_pred             EeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEe
Q 013578          156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWH  235 (440)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd  235 (440)
                      -....... +. ......            ......+....+|...++...+       +.+ . +|+++++|.+|++|+
T Consensus       340 ~~~~~s~~-~~-~p~~~f------------~f~ekP~~ef~GHt~DILDlSW-------SKn-~-fLLSSSMDKTVRLWh  396 (712)
T KOG0283|consen  340 RKGSQSPC-VL-LPLKAF------------VFSEKPFCEFKGHTADILDLSW-------SKN-N-FLLSSSMDKTVRLWH  396 (712)
T ss_pred             ccccCCcc-cc-CCCccc------------cccccchhhhhccchhheeccc-------ccC-C-eeEeccccccEEeec
Confidence            00000000 00 000000            0001111222333333333222       222 2 899999999999999


Q ss_pred             CCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578          236 GKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI  314 (440)
Q Consensus       236 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  314 (440)
                      +...+++..+. |...|+|++|+| |.++|++|+-||+|+||++...+         +.....-..-|++++|.|||++.
T Consensus       397 ~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---------Vv~W~Dl~~lITAvcy~PdGk~a  466 (712)
T KOG0283|consen  397 PGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---------VVDWNDLRDLITAVCYSPDGKGA  466 (712)
T ss_pred             CCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe---------eEeehhhhhhheeEEeccCCceE
Confidence            99999999886 678899999999 78999999999999999986543         33444455789999999999999


Q ss_pred             EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC--EEEEecCCEEEEEEcCCccchhhh
Q 013578          315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK--ILAATHGSTLQWLSVETGKVLDTA  392 (440)
Q Consensus       315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~i~i~d~~~~~~~~~~  392 (440)
                      +.|+.+|.+++|+....+......-..+     ......+. .|+.+.|.|...  +|++..|..|+|||.++..++..+
T Consensus       467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~-----~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf  540 (712)
T KOG0283|consen  467 VIGTFNGYCRFYDTEGLKLVSDFHIRLH-----NKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF  540 (712)
T ss_pred             EEEEeccEEEEEEccCCeEEEeeeEeec-----cCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh
Confidence            9999999999999986544322111110     01111222 689999987654  888899999999999999999988


Q ss_pred             hccccC-CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          393 EKAHEG-EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       393 ~~~h~~-~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ...|.. .-....|+.||        .+|+++++|..|+||+++..
T Consensus       541 KG~~n~~SQ~~Asfs~Dg--------k~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  541 KGFRNTSSQISASFSSDG--------KHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             cccccCCcceeeeEccCC--------CEEEEeecCceEEEEeCCCC
Confidence            534433 34677899998        89999999999999998543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.8e-32  Score=266.34  Aligned_cols=297  Identities=17%  Similarity=0.281  Sum_probs=216.0

Q ss_pred             cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCceEEEccC-CCeEEEEeecCCc
Q 013578           86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPTAVAFADN-ATSIVVATHNLSG  162 (440)
Q Consensus        86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~~~~~  162 (440)
                      .+.+|.+.|.+++|+|+|++||||+.|++|+||++......  ..........+...+.+++|++. +.++++++.+   
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~D---  554 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE---  554 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCC---
Confidence            35569999999999999999999999999999998642111  00001111223467899999875 6778777776   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC-CCCeEEEEeeCCceEEEEeCCCCce
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA-DGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                      ..+.+|+........                ....|...+       ..+.+++ ++. +|++|+.|++|++||+.++..
T Consensus       555 g~v~lWd~~~~~~~~----------------~~~~H~~~V-------~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~  610 (793)
T PLN00181        555 GVVQVWDVARSQLVT----------------EMKEHEKRV-------WSIDYSSADPT-LLASGSDDGSVKLWSINQGVS  610 (793)
T ss_pred             CeEEEEECCCCeEEE----------------EecCCCCCE-------EEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcE
Confidence            577777765431100                001111111       1223354 444 899999999999999999988


Q ss_pred             eeeeeCCCCcccEEEec-CCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC
Q 013578          242 LGNVDTNQLKNNMAAIS-PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD  320 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d  320 (440)
                      +..+..+ ..+.++.|+ +++.+|++|+.||.|++||++...       .....+.+|...|.++.|. ++.+|++++.|
T Consensus       611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-------~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D  681 (793)
T PLN00181        611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-------LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD  681 (793)
T ss_pred             EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-------ccceEecCCCCCEEEEEEe-CCCEEEEEECC
Confidence            8888754 578889985 579999999999999999997543       1345677899999999997 67899999999


Q ss_pred             CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhh-------
Q 013578          321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTA-------  392 (440)
Q Consensus       321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~-------  392 (440)
                      ++|++||++......    .    ..+.....+|...+..++|++++.+|++|+ |+.|++|+......+..+       
T Consensus       682 ~~ikiWd~~~~~~~~----~----~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~  753 (793)
T PLN00181        682 NTLKLWDLSMSISGI----N----ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP  753 (793)
T ss_pred             CEEEEEeCCCCcccc----C----CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence            999999997431100    0    011223345666788899999999999986 899999998655432111       


Q ss_pred             -----hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          393 -----EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       393 -----~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                           ...|...|.+++|+|++        .+|++|+.||.|+||++
T Consensus       754 ~~~~~~~~~~~~V~~v~ws~~~--------~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        754 VSGLEVDDASQFISSVCWRGQS--------STLVAANSTGNIKILEM  792 (793)
T ss_pred             ccccccCCCCcEEEEEEEcCCC--------CeEEEecCCCcEEEEec
Confidence                 12355679999999998        89999999999999997

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-33  Score=251.53  Aligned_cols=262  Identities=18%  Similarity=0.320  Sum_probs=224.2

Q ss_pred             cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      .|+.-+..|..++|+|...+++++-..|.|++||..-+.     ++..+..|.++|..++|+|+..              
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----li~rFdeHdGpVRgv~FH~~qp--------------   64 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----LIDRFDEHDGPVRGVDFHPTQP--------------   64 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhh-----HHhhhhccCCccceeeecCCCC--------------
Confidence            355667889999999999999999999999999998765     5667788999999999998754              


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV  245 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  245 (440)
                                                                             ++++|++|-.|++|+..+.+++.++
T Consensus        65 -------------------------------------------------------lFVSGGDDykIkVWnYk~rrclftL   89 (1202)
T KOG0292|consen   65 -------------------------------------------------------LFVSGGDDYKIKVWNYKTRRCLFTL   89 (1202)
T ss_pred             -------------------------------------------------------eEEecCCccEEEEEecccceehhhh
Confidence                                                                   7889999999999999999999999


Q ss_pred             eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578          246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV  325 (440)
Q Consensus       246 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i  325 (440)
                      .+|-..|+.+.|++.-.++++++.|.+|+||+..+++        ++..+.||..-|.|.+|+|....++++|-|.+||+
T Consensus        90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~--------~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK--------CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV  161 (1202)
T ss_pred             ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc--------eEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence            9999999999999999999999999999999998877        89999999999999999999999999999999999


Q ss_pred             EecCccccccCCCCcc-----------ccc----cccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc--
Q 013578          326 WNINVRYHLDEDPKTL-----------KVL----PIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK--  387 (440)
Q Consensus       326 wd~~~~~~~~~~~~~~-----------~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~--  387 (440)
                      ||+...+.-...+...           ..+    ....+...||...|+-++|+|.-.++++|+ |..|++|....-+  
T Consensus       162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW  241 (1202)
T KOG0292|consen  162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW  241 (1202)
T ss_pred             EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence            9997544322222200           000    112234568889999999999999999876 7899999886554  


Q ss_pred             chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       388 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .+.+. .+|...|.++-|+|..        .++++.|+|++|||||++.-+
T Consensus       242 EvDtc-rgH~nnVssvlfhp~q--------~lIlSnsEDksirVwDm~kRt  283 (1202)
T KOG0292|consen  242 EVDTC-RGHYNNVSSVLFHPHQ--------DLILSNSEDKSIRVWDMTKRT  283 (1202)
T ss_pred             eehhh-hcccCCcceEEecCcc--------ceeEecCCCccEEEEeccccc
Confidence            33444 6999999999999987        799999999999999998654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2e-33  Score=225.26  Aligned_cols=267  Identities=18%  Similarity=0.313  Sum_probs=230.6

Q ss_pred             CCCCCCCCCCCCcccCccc----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCC
Q 013578           65 PHSHSHGDKDQNKRHHPLD----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP  140 (440)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~  140 (440)
                      -.-.++++.|++.++|+..    ..+|.||-..|..+++|+-..||++++.|+.|+.||++..+     +++...+|-..
T Consensus       163 n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk-----vIR~YhGHlS~  237 (460)
T KOG0285|consen  163 NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK-----VIRHYHGHLSG  237 (460)
T ss_pred             ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh-----hHHHhccccce
Confidence            3456678899999999774    45788999999999999999999999999999999998765     66778888899


Q ss_pred             CceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe
Q 013578          141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST  220 (440)
Q Consensus       141 v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (440)
                      |.+++.+|.-.                                                                     
T Consensus       238 V~~L~lhPTld---------------------------------------------------------------------  248 (460)
T KOG0285|consen  238 VYCLDLHPTLD---------------------------------------------------------------------  248 (460)
T ss_pred             eEEEeccccce---------------------------------------------------------------------
Confidence            99999988533                                                                     


Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      .+++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++||++.++        ....+..|..
T Consensus       249 vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk--------t~~tlt~hkk  320 (460)
T KOG0285|consen  249 VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK--------TMITLTHHKK  320 (460)
T ss_pred             eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc--------eeEeeecccc
Confidence            78999999999999999999999999999999999999988899999999999999999887        6777888999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW  380 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i  380 (440)
                      .|.+++.+|....||+++.| .|+-|++..+..+              ....+|..-+++++...||-+++.+++|.+.+
T Consensus       321 svral~lhP~e~~fASas~d-nik~w~~p~g~f~--------------~nlsgh~~iintl~~nsD~v~~~G~dng~~~f  385 (460)
T KOG0285|consen  321 SVRALCLHPKENLFASASPD-NIKQWKLPEGEFL--------------QNLSGHNAIINTLSVNSDGVLVSGGDNGSIMF  385 (460)
T ss_pred             eeeEEecCCchhhhhccCCc-cceeccCCccchh--------------hccccccceeeeeeeccCceEEEcCCceEEEE
Confidence            99999999999999999987 7999999866433              22456777789999999999888888999999


Q ss_pred             EEcCCccchhhhh---c----cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          381 LSVETGKVLDTAE---K----AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       381 ~d~~~~~~~~~~~---~----~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ||.++|...+...   .    ..+..|.+.+|...+        ..|+||..|.+|++|.-+.
T Consensus       386 wdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg--------~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  386 WDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG--------SRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             EecCcCcccccccccccCCccccccceeEEeecccC--------ceEEeccCCcceEEEeccc
Confidence            9999986554431   0    134578999999998        8999999999999997643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=9.4e-33  Score=212.11  Aligned_cols=288  Identities=19%  Similarity=0.244  Sum_probs=228.3

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCC-eEEEEeecCCcc
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNAT-SIVVATHNLSGC  163 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~~~~~~  163 (440)
                      +.+++|...|.+++|+.+|..|++|+.|+++++|+++....   ..-....+|.+.|..++|+|... .+++++.+   .
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---~~~~~~~gh~~svdql~w~~~~~d~~atas~d---k   87 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---RKELVYRGHTDSVDQLCWDPKHPDLFATASGD---K   87 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---hhhhcccCCCcchhhheeCCCCCcceEEecCC---c
Confidence            67889999999999999999999999999999999987632   12234557778899999998654 55555555   4


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                      .+.+|+.....                        ....+....+-....++|+|. +++.+..|..|...|.++.+.+.
T Consensus        88 ~ir~wd~r~~k------------------------~~~~i~~~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~  142 (313)
T KOG1407|consen   88 TIRIWDIRSGK------------------------CTARIETKGENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVN  142 (313)
T ss_pred             eEEEEEeccCc------------------------EEEEeeccCcceEEEEcCCCC-EEEEecCcccEEEEEecccceee
Confidence            56666554432                        222222233333445589999 88888888889999999888776


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL  323 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i  323 (440)
                      ..+. ...+..++|+.++++|+.....|.|.|......+        ++..+++|.....||.|+|+|++||+|+.|..+
T Consensus       143 ~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk--------pv~si~AH~snCicI~f~p~GryfA~GsADAlv  213 (313)
T KOG1407|consen  143 EEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK--------PVQSIKAHPSNCICIEFDPDGRYFATGSADALV  213 (313)
T ss_pred             hhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccc--------cccccccCCcceEEEEECCCCceEeecccccee
Confidence            6554 3456778899888888888888999999875444        788999999999999999999999999999999


Q ss_pred             EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEE
Q 013578          324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITC  402 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~  402 (440)
                      .+||++..-|.+       .       ......+|..++||.||++||+++ |..|-|=++++|..+..+.  +.++...
T Consensus       214 SLWD~~ELiC~R-------~-------isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~t  277 (313)
T KOG1407|consen  214 SLWDVDELICER-------C-------ISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFT  277 (313)
T ss_pred             eccChhHhhhhe-------e-------eccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--ccCCcee
Confidence            999998554432       1       234466789999999999999987 8899999999999999985  9999999


Q ss_pred             EEecCCCCCCCCCcceEEEEeeCC---------CeEEEEeCCC
Q 013578          403 MAWAPKTIPMGNQQVSVLATSSVD---------KKVKLWLAPS  436 (440)
Q Consensus       403 v~~~~~~~~~~~~~~~~l~t~~~D---------g~i~vw~~~~  436 (440)
                      |+|+|..        .+||-+++|         |.|++|-+++
T Consensus       278 VAWHPk~--------~LLAyA~ddk~~d~~reag~vKiFG~~~  312 (313)
T KOG1407|consen  278 VAWHPKR--------PLLAYACDDKDGDSNREAGTVKIFGLSN  312 (313)
T ss_pred             EEecCCC--------ceeeEEecCCCCccccccceeEEecCCC
Confidence            9999997        788877764         6788887764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=7.8e-34  Score=216.71  Aligned_cols=288  Identities=17%  Similarity=0.237  Sum_probs=224.8

Q ss_pred             cccccCcceeEEEEcc---CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           86 TLKGHGDSVTGLCFSS---DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        86 ~l~~H~~~V~~l~~s~---dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      +-.||+.+|..++|||   +|-+|++++.||.-.+-+-+++.     -+..+.+|.+.|.+.....+...-++++.|...
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-----wigtfeghkgavw~~~l~~na~~aasaaadfta   83 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-----WIGTFEGHKGAVWSATLNKNATRAASAAADFTA   83 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-----cEEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence            3469999999999996   89999999999998877666654     356678899999999998888877777777322


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-ce
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KL  241 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~  241 (440)
                         .+|                        +..++.....+...-....+.|+.|.. +|++|+.+..+|+||++.. .+
T Consensus        84 ---kvw------------------------~a~tgdelhsf~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~Ap  135 (334)
T KOG0278|consen   84 ---KVW------------------------DAVTGDELHSFEHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAP  135 (334)
T ss_pred             ---hhh------------------------hhhhhhhhhhhhhhheeeeEEecccch-hhhccchHHHhhhhhccCCCCC
Confidence               233                        322222111111111223334466666 8999999999999999865 35


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      ...+.+|...|..+-|....+.|++.+.|++|++||.+++.        .+..+. ...+|+++.++++|++|.++ .-+
T Consensus       136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt--------~v~sL~-~~s~VtSlEvs~dG~ilTia-~gs  205 (334)
T KOG0278|consen  136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT--------EVQSLE-FNSPVTSLEVSQDGRILTIA-YGS  205 (334)
T ss_pred             chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc--------EEEEEe-cCCCCcceeeccCCCEEEEe-cCc
Confidence            67888999999999999999999999999999999999887        555555 56789999999999966554 557


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhccccCCe
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEI  400 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v  400 (440)
                      .|++||..+-..+..               ..-...|.+.+++|+..++++| .|..++.||..+|+.+..+.++|.++|
T Consensus       206 sV~Fwdaksf~~lKs---------------~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpV  270 (334)
T KOG0278|consen  206 SVKFWDAKSFGLLKS---------------YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPV  270 (334)
T ss_pred             eeEEeccccccceee---------------ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCce
Confidence            899999986544321               1223447789999998766665 489999999999999988768999999


Q ss_pred             EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      .|+.|+|+|        ...++||+||+||+|.+..++.
T Consensus       271 hcVrFSPdG--------E~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  271 HCVRFSPDG--------ELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             EEEEECCCC--------ceeeccCCCceEEEEEecCCCc
Confidence            999999999        8999999999999999987764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9e-35  Score=230.29  Aligned_cols=259  Identities=24%  Similarity=0.364  Sum_probs=212.8

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcc---eeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKS---FKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      |...-+-|..|||||+||++|+.||.|.|||..++....   .+....+.-+...|.|+.|+.|..              
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--------------  276 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--------------  276 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--------------
Confidence            567779999999999999999999999999998775321   111122233456677777765533              


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV  245 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  245 (440)
                                                                             ++++|+.||.|++|.+++|.+++.+
T Consensus       277 -------------------------------------------------------MlAsGsqDGkIKvWri~tG~ClRrF  301 (508)
T KOG0275|consen  277 -------------------------------------------------------MLASGSQDGKIKVWRIETGQCLRRF  301 (508)
T ss_pred             -------------------------------------------------------HhhccCcCCcEEEEEEecchHHHHh
Confidence                                                                   7899999999999999999999999


Q ss_pred             e-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEE
Q 013578          246 D-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLR  324 (440)
Q Consensus       246 ~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~  324 (440)
                      . .|...|+|+.|+.|+..+++++.|.++++.-+..++        ++..++||.+.|+...|.++|.++++++.||+|+
T Consensus       302 drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK--------~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk  373 (508)
T KOG0275|consen  302 DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK--------CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVK  373 (508)
T ss_pred             hhhhccCeeEEEEccCcchhhcccccceEEEeccccch--------hHHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence            7 889999999999999999999999999999998887        8999999999999999999999999999999999


Q ss_pred             EEecCccccccCCCCcccccc------c---------------------------cccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          325 VWNINVRYHLDEDPKTLKVLP------I---------------------------PLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       325 iwd~~~~~~~~~~~~~~~~~~------~---------------------------~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                      +|+..+..|+.+.......++      +                           ...........+-++..||.|.++.
T Consensus       374 vW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiY  453 (508)
T KOG0275|consen  374 VWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIY  453 (508)
T ss_pred             EecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEE
Confidence            999999888754322111110      0                           0111122233455788999999988


Q ss_pred             E-ecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          372 A-THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       372 ~-~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      + |.|+.++.|.+.+|++...+ ..|+..|..++-+|..        ++|++=++||.+++|.
T Consensus       454 cigED~vlYCF~~~sG~LE~tl-~VhEkdvIGl~HHPHq--------NllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  454 CIGEDGVLYCFSVLSGKLERTL-PVHEKDVIGLTHHPHQ--------NLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEccCcEEEEEEeecCceeeee-ecccccccccccCccc--------chhhhhcccchhhhcC
Confidence            7 66999999999999999888 5899999999999987        8999999999999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-33  Score=225.59  Aligned_cols=266  Identities=19%  Similarity=0.301  Sum_probs=216.3

Q ss_pred             CCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC
Q 013578           64 KPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG  139 (440)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~  139 (440)
                      .......+..+.+.+.|..    ....|+||++.|..++|+..|++||+++.|=.+++||.++.    ..+++...+|..
T Consensus       119 ~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~----~~c~ks~~gh~h  194 (406)
T KOG0295|consen  119 SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF----FRCIKSLIGHEH  194 (406)
T ss_pred             CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH----HHHHHHhcCccc
Confidence            3333445566777777755    36789999999999999999999999999999999999753    345677788999


Q ss_pred             CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccc-ccccCCCC
Q 013578          140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGAS-ATYGTADG  218 (440)
Q Consensus       140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  218 (440)
                      .|.++.|-|.|.++++++.|   ..+..|+..........                        ..+.... .+....||
T Consensus       195 ~vS~V~f~P~gd~ilS~srD---~tik~We~~tg~cv~t~------------------------~~h~ewvr~v~v~~DG  247 (406)
T KOG0295|consen  195 GVSSVFFLPLGDHILSCSRD---NTIKAWECDTGYCVKTF------------------------PGHSEWVRMVRVNQDG  247 (406)
T ss_pred             ceeeEEEEecCCeeeecccc---cceeEEecccceeEEec------------------------cCchHhEEEEEecCCe
Confidence            99999999999999999988   45566665554222111                        1111111 11225567


Q ss_pred             CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC---------------CCeEEEEecCCCEEEEEeEecCC
Q 013578          219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN---------------GRFLAAAAFTADVKVWEIVYSKD  283 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~dg~i~i~d~~~~~~  283 (440)
                      . ++++|+.|.+|++|-..++++...+..|+.++.|++|.|.               ++++.+++.|++|++||+.++. 
T Consensus       248 t-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-  325 (406)
T KOG0295|consen  248 T-IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-  325 (406)
T ss_pred             e-EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-
Confidence            6 9999999999999999999999999999999999999763               3589999999999999998876 


Q ss_pred             CceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          284 GLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       284 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                             ++.++.+|..+|..++|+|.|+||+++..|+++++||+++.+++..              ...|..-++++.|
T Consensus       326 -------cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~--------------~~ah~hfvt~lDf  384 (406)
T KOG0295|consen  326 -------CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT--------------LEAHEHFVTSLDF  384 (406)
T ss_pred             -------EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec--------------cCCCcceeEEEec
Confidence                   9999999999999999999999999999999999999998876532              2245566889999


Q ss_pred             CCCCCEEEEec-CCEEEEEEc
Q 013578          364 SSDGKILAATH-GSTLQWLSV  383 (440)
Q Consensus       364 s~~g~~l~~~~-~~~i~i~d~  383 (440)
                      ..+..++++|+ |..+++|..
T Consensus       385 h~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  385 HKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCCCceEEeccccceeeeeec
Confidence            99999999998 999999964

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.8e-33  Score=211.75  Aligned_cols=244  Identities=18%  Similarity=0.275  Sum_probs=203.8

Q ss_pred             CcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           91 GDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        91 ~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      .+.+..++|++. .+.+++++.||+++|||+.....    .+.....|...|.++.|++..+.                 
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----Pi~~~kEH~~EV~Svdwn~~~r~-----------------  118 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----PIHKFKEHKREVYSVDWNTVRRR-----------------  118 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----chhHHHhhhhheEEeccccccce-----------------
Confidence            678999999995 56889999999999999654332    45566788899999998764321                 


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ  249 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  249 (440)
                                                                         .+++++.|++|++|+...++.+.++.+|.
T Consensus       119 ---------------------------------------------------~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~  147 (311)
T KOG0277|consen  119 ---------------------------------------------------IFLTSSWDGTIKLWDPNRPNSVQTFNGHN  147 (311)
T ss_pred             ---------------------------------------------------eEEeeccCCceEeecCCCCcceEeecCCc
Confidence                                                               67777999999999999999999999999


Q ss_pred             CcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 013578          250 LKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTLRVWN  327 (440)
Q Consensus       250 ~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd  327 (440)
                      ..|...+|+| .++.+++++.|+.+++||++...        ....+..|...|.|+.|+. +...|+||+.|+.|++||
T Consensus       148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--------k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD  219 (311)
T KOG0277|consen  148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--------KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD  219 (311)
T ss_pred             cEEEEEecCCCCCCeEEEccCCceEEEEEecCCC--------ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence            9999999999 57899999999999999998765        3344788999999999988 566789999999999999


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAW  405 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~  405 (440)
                      ++..+             .++....+|...|..+.|||... +||+++ |-+++|||...+.-.......|+.-|..+.|
T Consensus       220 ir~~r-------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dw  286 (311)
T KOG0277|consen  220 IRNLR-------------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDW  286 (311)
T ss_pred             hhhcc-------------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccc
Confidence            98542             34566689999999999999865 667766 9999999998766444333579999999999


Q ss_pred             cCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          406 APKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ++-.+       .++|+++.|+.++||+.
T Consensus       287 s~~~~-------~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  287 SLFDP-------GQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccC-------ceeeecccccceeeecc
Confidence            98642       79999999999999984

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=1.3e-32  Score=216.54  Aligned_cols=304  Identities=16%  Similarity=0.256  Sum_probs=237.4

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCC-------------CCcceeeEEecCCCCCCCceEEEcc
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDA-------------SSKSFKFLRINLPPGGPPTAVAFAD  148 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~-------------~~~~~~~~~~~~~~~~~v~~v~~~~  148 (440)
                      .+...+..|.+++++.+|++||.++||||.|..|+|.|++..             .....++++....|..+|..+.|+|
T Consensus       103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            356678899999999999999999999999999999998721             1122367888899999999999999


Q ss_pred             CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC
Q 013578          149 NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG  228 (440)
Q Consensus       149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  228 (440)
                      ....|++++.|   ..+.+++..+....                     +..+.+.......++.+.|.|. +++.|.+.
T Consensus       183 re~ILiS~srD---~tvKlFDfsK~saK---------------------rA~K~~qd~~~vrsiSfHPsGe-fllvgTdH  237 (430)
T KOG0640|consen  183 RETILISGSRD---NTVKLFDFSKTSAK---------------------RAFKVFQDTEPVRSISFHPSGE-FLLVGTDH  237 (430)
T ss_pred             hhheEEeccCC---CeEEEEecccHHHH---------------------HHHHHhhccceeeeEeecCCCc-eEEEecCC
Confidence            99999999988   34555544332111                     1111222233344455688888 89999999


Q ss_pred             ceEEEEeCCCCceeeee---eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-ccc-cceE
Q 013578          229 TDISIWHGKTGKLLGNV---DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-GHK-SAVT  303 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~h~-~~v~  303 (440)
                      .++++||+++.++...-   ..|...|+++.+++.+++.++|+.||.|++||-...+        ++.++. .|. ..|.
T Consensus       238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r--------Cv~t~~~AH~gsevc  309 (430)
T KOG0640|consen  238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR--------CVRTIGNAHGGSEVC  309 (430)
T ss_pred             CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH--------HHHHHHhhcCCceee
Confidence            99999999998876543   3577889999999999999999999999999976554        555553 454 4689


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEE
Q 013578          304 WLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWL  381 (440)
Q Consensus       304 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~  381 (440)
                      +..|..+|+++++.+.|..+++|.+.+++.+........         .+....-+...|+....|+..-+  .+.+.-|
T Consensus       310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~---------tgrq~~rtqAvFNhtEdyVl~pDEas~slcsW  380 (430)
T KOG0640|consen  310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGT---------TGRQKHRTQAVFNHTEDYVLFPDEASNSLCSW  380 (430)
T ss_pred             eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCc---------ccchhhhhhhhhcCccceEEccccccCceeec
Confidence            999999999999999999999999998877643222110         11222234567888888888765  4789999


Q ss_pred             EcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      |.+++..+..+.-+|.+.+..+.-+|.+        .-++||+.|-.+|+|--.
T Consensus       381 daRtadr~~l~slgHn~a~R~i~HSP~~--------p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  381 DARTADRVALLSLGHNGAVRWIVHSPVE--------PAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             cccchhhhhhcccCCCCCceEEEeCCCC--------Cceeeecccceeeeeeec
Confidence            9999988877777999999999999998        789999999999999754

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-31  Score=206.74  Aligned_cols=288  Identities=17%  Similarity=0.157  Sum_probs=224.6

Q ss_pred             cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      .|+||..+++.+.++.+|.+|.||+.|.+..||-..+++     .+-...+|.+.|.++....+.+++++++.|   ..+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----rlGty~GHtGavW~~Did~~s~~liTGSAD---~t~   76 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----RLGTYDGHTGAVWCCDIDWDSKHLITGSAD---QTA   76 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----eeeeecCCCceEEEEEecCCcceeeecccc---cee
Confidence            478999999999999999999999999999999876665     567788999999999999999999999988   456


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe----eCCceEEEEeCC----
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC----SEGTDISIWHGK----  237 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~----~~d~~i~vwd~~----  237 (440)
                      .+|+.+.....                        ...........+-|+.+|...+++.    +..+.|.++|++    
T Consensus        77 kLWDv~tGk~l------------------------a~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~  132 (327)
T KOG0643|consen   77 KLWDVETGKQL------------------------ATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS  132 (327)
T ss_pred             EEEEcCCCcEE------------------------EEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh
Confidence            66665554222                        1222222223334567777444443    345779999988    


Q ss_pred             ---CCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578          238 ---TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI  314 (440)
Q Consensus       238 ---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  314 (440)
                         ..++...+..+...++.+-|.|.+++|++|..||.|.+||++++.       ..+..-+.|...|+.|+++||..++
T Consensus       133 ~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-------~~v~s~~~h~~~Ind~q~s~d~T~F  205 (327)
T KOG0643|consen  133 DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-------ELVDSDEEHSSKINDLQFSRDRTYF  205 (327)
T ss_pred             hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-------eeeechhhhccccccccccCCcceE
Confidence               456678888888999999999999999999999999999998775       2555567799999999999999999


Q ss_pred             EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCC---EE------------E
Q 013578          315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS---TL------------Q  379 (440)
Q Consensus       315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~i------------~  379 (440)
                      +++|.|.+-++||+++...+..               .....+|++.+++|....++.|.+.   .|            +
T Consensus       206 iT~s~Dttakl~D~~tl~v~Kt---------------y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEAr  270 (327)
T KOG0643|consen  206 ITGSKDTTAKLVDVRTLEVLKT---------------YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEAR  270 (327)
T ss_pred             EecccCccceeeeccceeeEEE---------------eeecccccceecccccceEEecCCceeeeeeeecccccchhhh
Confidence            9999999999999997655432               1223558899999988877765432   22            2


Q ss_pred             EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +|++...+.+..+ ++|-++|++++|+|+|        ...++|++||.||+..++.
T Consensus       271 Fyh~i~eEEigrv-kGHFGPINsvAfhPdG--------ksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  271 FYHLIFEEEIGRV-KGHFGPINSVAFHPDG--------KSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             HHHHHHHHHhccc-cccccCcceeEECCCC--------cccccCCCCceEEEEEecc
Confidence            2333333444455 6999999999999999        8999999999999987653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.2e-33  Score=230.20  Aligned_cols=261  Identities=18%  Similarity=0.270  Sum_probs=205.8

Q ss_pred             CCCCCCCCcccCcccc----ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC-CCCCCCce
Q 013578           69 SHGDKDQNKRHHPLDV----NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL-PPGGPPTA  143 (440)
Q Consensus        69 ~~~~~~~~~~~~~~~~----~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~-~~~~~v~~  143 (440)
                      .++...+...+|....    ..+++|..+|+++.|+++|.+++||+.+|.|++|+.....      ..... .|...|++
T Consensus       112 ltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn------Vk~~~ahh~eaIRd  185 (464)
T KOG0284|consen  112 LTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN------VKIIQAHHAEAIRD  185 (464)
T ss_pred             EeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh------hHHhhHhhhhhhhe
Confidence            3445555666665543    2467899999999999999999999999999999987543      22333 34488999


Q ss_pred             EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEee-cccccccCCCCCeEE
Q 013578          144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLF-GASATYGTADGSTII  222 (440)
Q Consensus       144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l  222 (440)
                      ++|+|+...+++++.|   ..+.+|+.....                        ..+.+..+- ...++.+.|... ++
T Consensus       186 lafSpnDskF~t~SdD---g~ikiWdf~~~k------------------------ee~vL~GHgwdVksvdWHP~kg-Li  237 (464)
T KOG0284|consen  186 LAFSPNDSKFLTCSDD---GTIKIWDFRMPK------------------------EERVLRGHGWDVKSVDWHPTKG-LI  237 (464)
T ss_pred             eccCCCCceeEEecCC---CeEEEEeccCCc------------------------hhheeccCCCCcceeccCCccc-ee
Confidence            9999999999999988   466666654331                        111111111 122223344444 99


Q ss_pred             EEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce
Q 013578          223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV  302 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v  302 (440)
                      ++++.|..|++||.+++.++.++..|...|..+.|++++++|++++.|..+++||++..+        .++.+++|+..|
T Consensus       238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk--------El~~~r~Hkkdv  309 (464)
T KOG0284|consen  238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK--------ELFTYRGHKKDV  309 (464)
T ss_pred             EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH--------HHHHhhcchhhh
Confidence            999999999999999999999999999999999999999999999999999999998655        688899999999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEE
Q 013578          303 TWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQW  380 (440)
Q Consensus       303 ~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i  380 (440)
                      ++++|+| ...+|.+|+.||.|..|.+.....+             ..-..+|...|.+++|+|-|.+|++|+ |..+++
T Consensus       310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-------------~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rf  376 (464)
T KOG0284|consen  310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-------------GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRF  376 (464)
T ss_pred             eeeccccccccceeeccCCCceEEEeccccccc-------------cCCCcccccceeeeeccccceeEeecCCCcceee
Confidence            9999999 5567889999999999998733221             122346778899999999999999987 899999


Q ss_pred             EEcC
Q 013578          381 LSVE  384 (440)
Q Consensus       381 ~d~~  384 (440)
                      |...
T Consensus       377 w~r~  380 (464)
T KOG0284|consen  377 WTRN  380 (464)
T ss_pred             eccC
Confidence            9753

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.8e-31  Score=207.32  Aligned_cols=247  Identities=14%  Similarity=0.197  Sum_probs=204.1

Q ss_pred             EEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEE-Eeecc
Q 013578          131 LRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAIL-TLFGA  209 (440)
Q Consensus       131 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  209 (440)
                      .+...+|.+.|.++.|++|.+++++++.|   ..+.+|+.-..                        .....+. .....
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqD---GklIvWDs~Tt------------------------nK~haipl~s~WV  100 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQD---GKLIVWDSFTT------------------------NKVHAIPLPSSWV  100 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccC---CeEEEEEcccc------------------------cceeEEecCceeE
Confidence            35667899999999999999999999988   35555554332                        1111111 11122


Q ss_pred             cccccCCCCCeEEEEeeCCceEEEEeCCCC------ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCC
Q 013578          210 SATYGTADGSTIIASCSEGTDISIWHGKTG------KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD  283 (440)
Q Consensus       210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  283 (440)
                      -.++++|.|+ +++.|+.|+...||++.+.      ...+.+.+|.+.+.|+.|-+ ...|++++.|.++.+||+..++ 
T Consensus       101 MtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~-  177 (343)
T KOG0286|consen  101 MTCAYSPSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ-  177 (343)
T ss_pred             EEEEECCCCC-eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce-
Confidence            3345688888 9999999999999999865      34577889999999999987 4567899999999999998887 


Q ss_pred             CceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          284 GLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       284 ~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                             .+..+.+|.+.|.+++++| +++.+++|+-|+..++||++.+.+.              ....+|...|+++.
T Consensus       178 -------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~--------------qtF~ghesDINsv~  236 (343)
T KOG0286|consen  178 -------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV--------------QTFEGHESDINSVR  236 (343)
T ss_pred             -------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee--------------EeecccccccceEE
Confidence                   7889999999999999999 9999999999999999999977553              23458888899999


Q ss_pred             eCCCCCEEEEec-CCEEEEEEcCCccchhhhhcccc---CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          363 LSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHE---GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       363 ~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      |.|+|.-+++|+ |+..++||++..+.+..+.  |.   .+|++++|+..|        ++|++|..|.++.+||.-.++
T Consensus       237 ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys--~~~~~~gitSv~FS~SG--------RlLfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  237 FFPSGDAFATGSDDATCRLYDLRADQELAVYS--HDSIICGITSVAFSKSG--------RLLFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             EccCCCeeeecCCCceeEEEeecCCcEEeeec--cCcccCCceeEEEcccc--------cEEEeeecCCceeEeeccccc
Confidence            999999999987 7999999999999888774  43   479999999999        999999999999999986554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.9e-32  Score=239.98  Aligned_cols=281  Identities=16%  Similarity=0.226  Sum_probs=229.0

Q ss_pred             CCCCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578           62 HSKPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP  137 (440)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~  137 (440)
                      +++..-..++.-.+.++.|+.    ++..|.+|.++|+.++|+|++.++++||.|..|+||+..+..     ++....+|
T Consensus        18 HP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr-----clftL~GH   92 (1202)
T KOG0292|consen   18 HPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR-----CLFTLLGH   92 (1202)
T ss_pred             CCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce-----ehhhhccc
Confidence            333333445556677788866    467788999999999999999999999999999999998764     55677788


Q ss_pred             CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578          138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD  217 (440)
Q Consensus       138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (440)
                      -..|..+.|++.-.                                                                  
T Consensus        93 lDYVRt~~FHheyP------------------------------------------------------------------  106 (1202)
T KOG0292|consen   93 LDYVRTVFFHHEYP------------------------------------------------------------------  106 (1202)
T ss_pred             cceeEEeeccCCCc------------------------------------------------------------------
Confidence            89999999987643                                                                  


Q ss_pred             CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee----------
Q 013578          218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK----------  287 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------  287 (440)
                         .++++++|.+|+||+..+++++..+.+|...|.|.+|+|....+++++-|.+|++||+..-+.....          
T Consensus       107 ---WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~  183 (1202)
T KOG0292|consen  107 ---WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG  183 (1202)
T ss_pred             ---eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence               7888999999999999999999999999999999999999999999999999999998532211110          


Q ss_pred             -----------eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCee
Q 013578          288 -----------AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL  356 (440)
Q Consensus       288 -----------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (440)
                                 ..-..+.+.||...|+-++|+|.-..|++|+.|..|++|.++..+.            .......+|..
T Consensus       184 ~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa------------WEvDtcrgH~n  251 (1202)
T KOG0292|consen  184 QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA------------WEVDTCRGHYN  251 (1202)
T ss_pred             cccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc------------eeehhhhcccC
Confidence                       1123456889999999999999999999999999999999874321            12345568888


Q ss_pred             eeeeEEeCCCCCEEEE-ecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          357 QYDRLSLSSDGKILAA-THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       357 ~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      .|+++-|+|...++.+ +.|+.|++||+...+.+.++. ...+.-+.++-+|..        ++++. +-|+-+.||.++
T Consensus       252 nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr-rendRFW~laahP~l--------NLfAA-gHDsGm~VFkle  321 (1202)
T KOG0292|consen  252 NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR-RENDRFWILAAHPEL--------NLFAA-GHDSGMIVFKLE  321 (1202)
T ss_pred             CcceEEecCccceeEecCCCccEEEEecccccceeeee-ccCCeEEEEEecCCc--------ceeee-ecCCceEEEEEc
Confidence            8999999999888777 559999999999999999884 556789999999997        55554 557778888887


Q ss_pred             CCC
Q 013578          436 SLE  438 (440)
Q Consensus       436 ~~~  438 (440)
                      ...
T Consensus       322 REr  324 (1202)
T KOG0292|consen  322 RER  324 (1202)
T ss_pred             ccC
Confidence            543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.9e-31  Score=214.46  Aligned_cols=286  Identities=16%  Similarity=0.254  Sum_probs=217.7

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCe---EEEEeecCCcceE
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATS---IVVATHNLSGCSL  165 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~---l~~~~~~~~~~~~  165 (440)
                      -|.+.|.++...  +++|+||++||++|+|+....      ......+|.+++.+++|.-....   +++++.|   ..+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D---qtl  171 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD---QTL  171 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCc------eEEEEecCCcceeeeEEEecCCccceEEEecCC---ceE
Confidence            489999999887  779999999999999998754      45667789999999988754444   7888777   344


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC--------
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK--------  237 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~--------  237 (440)
                      .+|..+..........            ...+|...+       .++...++|. .+++|+.|.+|.+|+..        
T Consensus       172 ~Lw~~~~~~~~~~~~~------------~~~GHk~~V-------~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E  231 (423)
T KOG0313|consen  172 RLWKWNVGENKVKALK------------VCRGHKRSV-------DSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELE  231 (423)
T ss_pred             EEEEecCchhhhhHHh------------Hhcccccce-------eEEEecCCCC-eEEeecccceeeecccCCCcccccc
Confidence            4443333211111000            001222111       1222256676 99999999999999932        


Q ss_pred             -----------------CCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          238 -----------------TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       238 -----------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                                       ++.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+..+.        ....+. ...
T Consensus       232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~--------~~~~~~-~~k  301 (423)
T KOG0313|consen  232 SSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG--------LKSTLT-TNK  301 (423)
T ss_pred             ccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc--------ceeeee-cCc
Confidence                             1234566788999999999998 7789999999999999998876        444444 356


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE-Eec-CCEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATH-GSTL  378 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~-~~~i  378 (440)
                      .+++++++|..++|++|+.|..+++||.+++.-           ........+|...|..+.|+|...++. +++ |+.+
T Consensus       302 sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g-----------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~  370 (423)
T KOG0313|consen  302 SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG-----------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTV  370 (423)
T ss_pred             ceeEeecccccceeeecCCCCceeecCCCCCCC-----------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeE
Confidence            789999999999999999999999999997532           123345568888999999999988655 444 9999


Q ss_pred             EEEEcCCcc-chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          379 QWLSVETGK-VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       379 ~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ++||+++.+ .+..+ .+|.+.|.++.|+..+         ++++||.|.+|+|+.-..
T Consensus       371 klWDvRS~k~plydI-~~h~DKvl~vdW~~~~---------~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  371 KLWDVRSTKAPLYDI-AGHNDKVLSVDWNEGG---------LIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             EEEEeccCCCcceee-ccCCceEEEEeccCCc---------eEEeccCcceEEEecccc
Confidence            999999988 88888 5999999999999874         899999999999997654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.9e-32  Score=218.93  Aligned_cols=285  Identities=16%  Similarity=0.283  Sum_probs=218.2

Q ss_pred             cccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           84 VNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      +..|.||.+.|.|++=+|.. ..++||+.||.|+|||+....     +...+..|.+.|..+++..  ..+++++.|   
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-----~~~~f~AH~G~V~Gi~v~~--~~~~tvgdD---  128 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-----CIRTFKAHEGLVRGICVTQ--TSFFTVGDD---  128 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-----hhheeecccCceeeEEecc--cceEEecCC---
Confidence            56789999999999999976 789999999999999998765     4466678889999999987  667777766   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ..+..|..+...                         ...+........+- .......++||+.+  |.|||.....++
T Consensus       129 KtvK~wk~~~~p-------------------------~~tilg~s~~~gId-h~~~~~~FaTcGe~--i~IWD~~R~~Pv  180 (433)
T KOG0268|consen  129 KTVKQWKIDGPP-------------------------LHTILGKSVYLGID-HHRKNSVFATCGEQ--IDIWDEQRDNPV  180 (433)
T ss_pred             cceeeeeccCCc-------------------------ceeeeccccccccc-cccccccccccCce--eeecccccCCcc
Confidence            445555433210                         00011111111111 11222278888776  999999988999


Q ss_pred             eeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          243 GNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      ..+.-....+.++.|+|-. ..|+++..|+.|.+||++...        ++..+. ....-+.|+|+|.+-.|+++++|.
T Consensus       181 ~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~--------Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~  251 (433)
T KOG0268|consen  181 SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS--------PLKKVI-LTMRTNTICWNPEAFNFVAANEDH  251 (433)
T ss_pred             ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC--------ccceee-eeccccceecCccccceeeccccc
Confidence            9998888889999999965 567777799999999998776        333322 234567899999888899999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEI  400 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v  400 (440)
                      .++.||++...             .+.....+|...|..+.|||-|+-+++|+ |.+|+||.+..+..........-..|
T Consensus       252 nlY~~DmR~l~-------------~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V  318 (433)
T KOG0268|consen  252 NLYTYDMRNLS-------------RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHV  318 (433)
T ss_pred             cceehhhhhhc-------------ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhhee
Confidence            99999998532             24555668888999999999999888876 99999999998876665533344579


Q ss_pred             EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      .|+.|+-|.        .++++||+|+.||+|...-
T Consensus       319 ~~Vk~S~Ds--------kyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  319 FCVKYSMDS--------KYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             eEEEEeccc--------cEEEecCCCcceeeeecch
Confidence            999999998        8999999999999998753

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-30  Score=228.77  Aligned_cols=285  Identities=21%  Similarity=0.294  Sum_probs=222.6

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS  164 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~  164 (440)
                      ..+.||+..|+++++|.|...++||+. +.+++|+..+..+     ++...  .+.+.+..|.|.+++++++..++....
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kc-----iRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~v  438 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKC-----IRTIT--CGYILASKFVPGDRYIVLGTKNGELQV  438 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcce-----eEEec--cccEEEEEecCCCceEEEeccCCceEE
Confidence            356799999999999999888888764 5799999987653     33221  147889999999999999998854333


Q ss_pred             EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-----C
Q 013578          165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-----G  239 (440)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-----~  239 (440)
                      +.+....-..                   ....|...       ...+..+||+. .+++++.|.+|++||..-     +
T Consensus       439 fdlaS~~l~E-------------------ti~AHdga-------IWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~g  491 (888)
T KOG0306|consen  439 FDLASASLVE-------------------TIRAHDGA-------IWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPG  491 (888)
T ss_pred             EEeehhhhhh-------------------hhhccccc-------eeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCc
Confidence            3332221110                   00111111       11122367777 899999999999998641     2


Q ss_pred             cee--------eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC
Q 013578          240 KLL--------GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS  311 (440)
Q Consensus       240 ~~~--------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  311 (440)
                      ...        +++.. ...|.|+.+||||++|+++--|.+++||-+++-+        ....+.||.-||.||..+||+
T Consensus       492 t~~k~lsl~~~rtLel-~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK--------FflsLYGHkLPV~smDIS~DS  562 (888)
T KOG0306|consen  492 TQKKVLSLKHTRTLEL-EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK--------FFLSLYGHKLPVLSMDISPDS  562 (888)
T ss_pred             ccceeeeeccceEEec-cccEEEEEEcCCCcEEEEEeccCeEEEEEeccee--------eeeeecccccceeEEeccCCc
Confidence            111        22222 4578999999999999999999999999997665        677899999999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchh
Q 013578          312 EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLD  390 (440)
Q Consensus       312 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~  390 (440)
                      ..++|||.|..|++|-++-+.|..              ...+|...|.++.|-|...++.++ -|+.++-||...-+.+.
T Consensus       563 klivTgSADKnVKiWGLdFGDCHK--------------S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq  628 (888)
T KOG0306|consen  563 KLIVTGSADKNVKIWGLDFGDCHK--------------SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ  628 (888)
T ss_pred             CeEEeccCCCceEEeccccchhhh--------------hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhe
Confidence            999999999999999999776632              234677789999999988866665 59999999999999999


Q ss_pred             hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      .+ .+|...|+|++.+|+|        .+++++|.|.+||+|....
T Consensus       629 ~L-~~H~~ev~cLav~~~G--------~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  629 KL-DGHHSEVWCLAVSPNG--------SFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ee-ccchheeeeeEEcCCC--------CeEEeccCCceeEeeeccC
Confidence            99 5999999999999999        8999999999999998764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-30  Score=201.14  Aligned_cols=270  Identities=13%  Similarity=0.195  Sum_probs=201.7

Q ss_pred             CCCCCCCCCCcccCccc-------cccc-cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578           67 SHSHGDKDQNKRHHPLD-------VNTL-KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG  138 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~~-------~~~l-~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~  138 (440)
                      ..++.+.|+.+|+|...       ...| .+|+..|+.++|+|.|++||+||.|.++.||.-..++   +.+.....+|.
T Consensus        29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e---fecv~~lEGHE  105 (312)
T KOG0645|consen   29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE---FECVATLEGHE  105 (312)
T ss_pred             EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc---eeEEeeeeccc
Confidence            45777888888888664       1222 3799999999999999999999999999999876544   45677888999


Q ss_pred             CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      ..|.+++|+++|.+|++++.+   ..+++|........             ........|...       ...+.+.|..
T Consensus       106 nEVK~Vaws~sG~~LATCSRD---KSVWiWe~deddEf-------------ec~aVL~~HtqD-------VK~V~WHPt~  162 (312)
T KOG0645|consen  106 NEVKCVAWSASGNYLATCSRD---KSVWIWEIDEDDEF-------------ECIAVLQEHTQD-------VKHVIWHPTE  162 (312)
T ss_pred             cceeEEEEcCCCCEEEEeeCC---CeEEEEEecCCCcE-------------EEEeeecccccc-------ccEEEEcCCc
Confidence            999999999999999999998   78888876532100             000011111111       1122335555


Q ss_pred             CeEEEEeeCCceEEEEeCC---CCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578          219 STIIASCSEGTDISIWHGK---TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      . +|++++.|.+|++|.-.   ..++++++.+|...|.+++|++.|..|++++.|++++||.....-            -
T Consensus       163 d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------~  229 (312)
T KOG0645|consen  163 D-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------S  229 (312)
T ss_pred             c-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------c
Confidence            5 99999999999999766   346889999999999999999999999999999999999864221            1


Q ss_pred             eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC--CCEEEEe
Q 013578          296 KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD--GKILAAT  373 (440)
Q Consensus       296 ~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~  373 (440)
                      ..|+..+..+.|.  ...|++++.|+.|++|.-...       .....+.........|...|+++.|.|.  ++++.+|
T Consensus       230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~-------~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~  300 (312)
T KOG0645|consen  230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS-------PDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG  300 (312)
T ss_pred             hhcccceEeeeec--ccceEeccCCCEEEEEEecCC-------CCCchHHHHHhhhcccccccceEEEcCCCCCceeecC
Confidence            2377899999997  457999999999999976521       1112222333445667778999999994  4444456


Q ss_pred             cCCEEEEEEcC
Q 013578          374 HGSTLQWLSVE  384 (440)
Q Consensus       374 ~~~~i~i~d~~  384 (440)
                      +||.+++|.+.
T Consensus       301 DDG~v~~W~l~  311 (312)
T KOG0645|consen  301 DDGIVNFWELE  311 (312)
T ss_pred             CCceEEEEEec
Confidence            68999999864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.1e-31  Score=229.95  Aligned_cols=197  Identities=22%  Similarity=0.363  Sum_probs=161.5

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      .++++ ..+.+++|+..+.++++++...  .+.+..|-|.++++++|...|.+.+||+....        .+...++|.+
T Consensus       387 ~~~Sg-a~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~--------l~Eti~AHdg  455 (888)
T KOG0306|consen  387 LLASG-AGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASAS--------LVETIRAHDG  455 (888)
T ss_pred             eeeec-CCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhh--------hhhhhhcccc
Confidence            44444 4566999999999999999764  68889999999999999999999999997765        6777889999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQ  379 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~  379 (440)
                      .|++++.+||+..+++||.|.+|++||..-.....  ....+.+.+.....-.-...|.++++||||++||++- |++++
T Consensus       456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~--gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVk  533 (888)
T KOG0306|consen  456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP--GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVK  533 (888)
T ss_pred             ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC--cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEE
Confidence            99999999999999999999999999987432210  1111111111111112234588999999999999997 99999


Q ss_pred             EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      +|-+.+.+....+ -||.-+|.||..+||+        .+++|||.|.+|+||-++=|.|
T Consensus       534 VyflDtlKFflsL-YGHkLPV~smDIS~DS--------klivTgSADKnVKiWGLdFGDC  584 (888)
T KOG0306|consen  534 VYFLDTLKFFLSL-YGHKLPVLSMDISPDS--------KLIVTGSADKNVKIWGLDFGDC  584 (888)
T ss_pred             EEEecceeeeeee-cccccceeEEeccCCc--------CeEEeccCCCceEEeccccchh
Confidence            9999999988888 5999999999999998        8999999999999999987765

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=2.4e-30  Score=232.70  Aligned_cols=236  Identities=14%  Similarity=0.168  Sum_probs=184.6

Q ss_pred             cccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           86 TLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        86 ~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      .+.||.+.|++++|+| ++++|++|+.|++|++||+......  ....+....+|...|.+++|+|++.           
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-----------  138 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-----------  138 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-----------
Confidence            4789999999999999 8899999999999999999764321  1122344567888888899987642           


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                                                                               .+|++++.|++|++||+.+++.+
T Consensus       139 ---------------------------------------------------------~iLaSgs~DgtVrIWDl~tg~~~  161 (493)
T PTZ00421        139 ---------------------------------------------------------NVLASAGADMVVNVWDVERGKAV  161 (493)
T ss_pred             ---------------------------------------------------------CEEEEEeCCCEEEEEECCCCeEE
Confidence                                                                     17889999999999999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc-eEEEEEcCCCCEEEEEe---
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA-VTWLCFAPNSEQIITAS---  318 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~~---  318 (440)
                      ..+..|...|.+++|+|+|.+|++++.|+.|++||++.++        .+..+.+|.+. +..+.|.+++..+++++   
T Consensus       162 ~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~--------~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~  233 (493)
T PTZ00421        162 EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT--------IVSSVEAHASAKSQRCLWAKRKDLIITLGCSK  233 (493)
T ss_pred             EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc--------EEEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence            9999999999999999999999999999999999998765        56677788765 45678999888877654   


Q ss_pred             -CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhcc
Q 013578          319 -KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKA  395 (440)
Q Consensus       319 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~  395 (440)
                       .|+.|++||+++....      ....     . ......+....|++++.+|++++  |+.|++||+.+++........
T Consensus       234 s~Dr~VklWDlr~~~~p------~~~~-----~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~  301 (493)
T PTZ00421        234 SQQRQIMLWDTRKMASP------YSTV-----D-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS  301 (493)
T ss_pred             CCCCeEEEEeCCCCCCc------eeEe-----c-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc
Confidence             4789999999854311      0000     0 01122344577999999887653  899999999999877665445


Q ss_pred             ccCCeEEEEecCCC
Q 013578          396 HEGEITCMAWAPKT  409 (440)
Q Consensus       396 h~~~v~~v~~~~~~  409 (440)
                      +..++..++|.|..
T Consensus       302 s~~~~~g~~~~pk~  315 (493)
T PTZ00421        302 SVEPHKGLCMMPKW  315 (493)
T ss_pred             CCCCCcceEecccc
Confidence            66778899999974

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.98  E-value=1e-31  Score=219.35  Aligned_cols=294  Identities=19%  Similarity=0.274  Sum_probs=224.6

Q ss_pred             CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578           80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN  159 (440)
Q Consensus        80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~  159 (440)
                      +......+..|.+.|..+.|-++...|+||+.|..|++|++......   ......+..++++++.|.++++++++++.+
T Consensus       164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---~~~tLaGs~g~it~~d~d~~~~~~iAas~d  240 (459)
T KOG0288|consen  164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---LISTLAGSLGNITSIDFDSDNKHVIAASND  240 (459)
T ss_pred             chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---hhhhhhccCCCcceeeecCCCceEEeecCC
Confidence            34456778999999999999999899999999999999999876533   445556677889999999999999999988


Q ss_pred             CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578          160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG  239 (440)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  239 (440)
                         ..+.+|+.......                ....+|..++....+       . -+...+++|+.|.+|++||+...
T Consensus       241 ---~~~r~Wnvd~~r~~----------------~TLsGHtdkVt~ak~-------~-~~~~~vVsgs~DRtiK~WDl~k~  293 (459)
T KOG0288|consen  241 ---KNLRLWNVDSLRLR----------------HTLSGHTDKVTAAKF-------K-LSHSRVVSGSADRTIKLWDLQKA  293 (459)
T ss_pred             ---Cceeeeeccchhhh----------------hhhcccccceeeehh-------h-ccccceeeccccchhhhhhhhhh
Confidence               45556655443211                112233333322222       1 22224999999999999999998


Q ss_pred             ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578          240 KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      .+.+++-. ...+..++.+  ...+++|-.|++|++||++...        +......+ +.|+++..++++..|.+++.
T Consensus       294 ~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~--------~~~sv~~g-g~vtSl~ls~~g~~lLsssR  361 (459)
T KOG0288|consen  294 YCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD--------KTRSVPLG-GRVTSLDLSMDGLELLSSSR  361 (459)
T ss_pred             heeccccc-cccccceEec--ceeeeecccccceEEEeccCCc--------eeeEeecC-cceeeEeeccCCeEEeeecC
Confidence            88877654 3344555555  5678899999999999998776        56666655 48999999999999999999


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccC
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEG  398 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~  398 (440)
                      |.++.+.|+++.....       .+...   .......++.+.|||++.|+++|+ ||.|+||++.++++...+...+..
T Consensus       362 Ddtl~viDlRt~eI~~-------~~sA~---g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~  431 (459)
T KOG0288|consen  362 DDTLKVIDLRTKEIRQ-------TFSAE---GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN  431 (459)
T ss_pred             CCceeeeecccccEEE-------Eeecc---ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence            9999999999754321       11111   111123378999999999999987 999999999999998887645554


Q ss_pred             -CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          399 -EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       399 -~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                       .|++++|+|.|        ..|++++.++.+.+|.
T Consensus       432 ~aI~s~~W~~sG--------~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  432 AAITSLSWNPSG--------SGLLSADKQKAVTLWT  459 (459)
T ss_pred             cceEEEEEcCCC--------chhhcccCCcceEecC
Confidence             69999999998        8999999999999994

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.1e-30  Score=226.31  Aligned_cols=239  Identities=20%  Similarity=0.295  Sum_probs=203.6

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC-CCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP-PGGPPTAVAFADNATSIVVATHNLSGCSLYMY  168 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~  168 (440)
                      +.+.|+++.|+++|.+|+.|..+|.|.|||......     .+.... |...|.+++|...                   
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-----~~~~~~~h~~rvg~laW~~~-------------------  271 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-----TRTLRGSHASRVGSLAWNSS-------------------  271 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-----cccccCCcCceeEEEeccCc-------------------
Confidence            378999999999999999999999999999886543     233333 7788888888632                   


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee-eeC
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT  247 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~  247 (440)
                                                                          .+.+|+.++.|..+|++..+.... +.+
T Consensus       272 ----------------------------------------------------~lssGsr~~~I~~~dvR~~~~~~~~~~~  299 (484)
T KOG0305|consen  272 ----------------------------------------------------VLSSGSRDGKILNHDVRISQHVVSTLQG  299 (484)
T ss_pred             ----------------------------------------------------eEEEecCCCcEEEEEEecchhhhhhhhc
Confidence                                                                688899999999999998776554 888


Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEe--CCCcEE
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITAS--KDGTLR  324 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~--~dg~i~  324 (440)
                      |...|..+.|++|+++||+|+.|+.+.|||.....        ....+..|.+.|..++|+| ....||+|+  .|+.|+
T Consensus       300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~--------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~  371 (484)
T KOG0305|consen  300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE--------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK  371 (484)
T ss_pred             ccceeeeeEECCCCCeeccCCCccceEeccCCCcc--------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence            99999999999999999999999999999984433        6778889999999999999 566888876  699999


Q ss_pred             EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec---CCEEEEEEcCCccchhhhhccccCCeE
Q 013578          325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH---GSTLQWLSVETGKVLDTAEKAHEGEIT  401 (440)
Q Consensus       325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~~~i~i~d~~~~~~~~~~~~~h~~~v~  401 (440)
                      +||..++..+...               .....|..+.|++..+-|+++.   ++.|.||+..+.+.+..+ .+|...|.
T Consensus       372 fwn~~~g~~i~~v---------------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-~gH~~RVl  435 (484)
T KOG0305|consen  372 FWNTNTGARIDSV---------------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-LGHTSRVL  435 (484)
T ss_pred             EEEcCCCcEeccc---------------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-cCCcceeE
Confidence            9999987665332               2234588999999998776643   689999999999999888 69999999


Q ss_pred             EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      .++++||+        ..+++|+.|.++++|++-.
T Consensus       436 ~la~SPdg--------~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  436 YLALSPDG--------ETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EEEECCCC--------CEEEEecccCcEEeccccC
Confidence            99999999        8999999999999999865

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.98  E-value=2.3e-30  Score=232.91  Aligned_cols=257  Identities=24%  Similarity=0.341  Sum_probs=210.4

Q ss_pred             CCCCCCCcccCcc----cccc-ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578           70 HGDKDQNKRHHPL----DVNT-LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV  144 (440)
Q Consensus        70 ~~~~~~~~~~~~~----~~~~-l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v  144 (440)
                      .+..++....|..    .+.. +.||.+.|+++++..-+.+|++|+.|.+++|||+.++.     +.....+|.+.+.++
T Consensus       223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-----C~~~l~gh~stv~~~  297 (537)
T KOG0274|consen  223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-----CTHSLQGHTSSVRCL  297 (537)
T ss_pred             ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-----EEEEecCCCceEEEE
Confidence            3445555555543    3445 99999999999998778899999999999999998876     456666777777766


Q ss_pred             EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578          145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS  224 (440)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  224 (440)
                      ...+.                                                                       .+++
T Consensus       298 ~~~~~-----------------------------------------------------------------------~~~s  306 (537)
T KOG0274|consen  298 TIDPF-----------------------------------------------------------------------LLVS  306 (537)
T ss_pred             EccCc-----------------------------------------------------------------------eEee
Confidence            65432                                                                       6788


Q ss_pred             eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578          225 CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW  304 (440)
Q Consensus       225 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (440)
                      |+.|.+|++|+++++..+..+.+|..+|.++..+  +.++++|+.|+.|++||+...+        ++..+.+|...|.+
T Consensus       307 gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~--------cl~sl~gH~~~V~s  376 (537)
T KOG0274|consen  307 GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK--------CLKSLSGHTGRVYS  376 (537)
T ss_pred             ccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce--------eeeeecCCcceEEE
Confidence            9999999999999999999999999999999988  8899999999999999998665        89999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCcc-ccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEE
Q 013578          305 LCFAPNSEQIITASKDGTLRVWNINVR-YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLS  382 (440)
Q Consensus       305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d  382 (440)
                      +.+.+. ..+++|+.|++|++||+++. +++.              ...+|..-+  -.+...+++|+++. |+.|++||
T Consensus       377 l~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~--------------tl~~h~~~v--~~l~~~~~~Lvs~~aD~~Ik~WD  439 (537)
T KOG0274|consen  377 LIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH--------------TLQGHTSLV--SSLLLRDNFLVSSSADGTIKLWD  439 (537)
T ss_pred             EEecCc-ceEEeeeeccceEeecCCchhhhhh--------------hhcCCcccc--cccccccceeEeccccccEEEee
Confidence            988654 78999999999999999987 4432              223333333  23334567777765 99999999


Q ss_pred             cCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       383 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      ..+++++..+...|.+.|..+++. +         ..+++++.||++++||++++++
T Consensus       440 ~~~~~~~~~~~~~~~~~v~~l~~~-~---------~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  440 AEEGECLRTLEGRHVGGVSALALG-K---------EEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             cccCceeeeeccCCcccEEEeecC-c---------ceEEEEecCCeeEEEecccCch
Confidence            999999999953377899999998 3         4789999999999999999875

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.2e-28  Score=195.21  Aligned_cols=294  Identities=16%  Similarity=0.245  Sum_probs=214.2

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee--cCCc
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH--NLSG  162 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~--~~~~  162 (440)
                      +.|..-.+.|+++.|+++|.+|++++.|.+++|||..++.     ..+....+...+..++|......++.++.  |...
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-----~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-----QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-----eeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence            3455567889999999999999999999999999998775     33444445567888999888777777665  3233


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ..+.+.+....                   +...+|...+.....       +|-+. .+++++.|++|++||++..++.
T Consensus        83 ryLsl~dNkyl-------------------RYF~GH~~~V~sL~~-------sP~~d-~FlS~S~D~tvrLWDlR~~~cq  135 (311)
T KOG1446|consen   83 RYLSLHDNKYL-------------------RYFPGHKKRVNSLSV-------SPKDD-TFLSSSLDKTVRLWDLRVKKCQ  135 (311)
T ss_pred             EEEEeecCceE-------------------EEcCCCCceEEEEEe-------cCCCC-eEEecccCCeEEeeEecCCCCc
Confidence            33334333222                   233444444433333       56665 8999999999999999988887


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~  322 (440)
                      ..+....  -..++|+|+|-++|++.....|++||++.-..+.......   ..+.....+.|.|+|||++|+.+...+.
T Consensus       136 g~l~~~~--~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i---~~~~~~ew~~l~FS~dGK~iLlsT~~s~  210 (311)
T KOG1446|consen  136 GLLNLSG--RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSI---TDNDEAEWTDLEFSPDGKSILLSTNASF  210 (311)
T ss_pred             eEEecCC--CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEcc---CCCCccceeeeEEcCCCCEEEEEeCCCc
Confidence            7776543  3457999999999999988899999998876544332211   1144677899999999999999999999


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeE
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEIT  401 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~  401 (440)
                      +++.|.-.+..+...       .  .+...+ ..+ ....|+||++++.+|+ ||.|++|++++|..+..+...+.+++.
T Consensus       211 ~~~lDAf~G~~~~tf-------s--~~~~~~-~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~  279 (311)
T KOG1446|consen  211 IYLLDAFDGTVKSTF-------S--GYPNAG-NLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVS  279 (311)
T ss_pred             EEEEEccCCcEeeeE-------e--eccCCC-Ccc-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcc
Confidence            999998876533211       1  111111 111 3688999999999987 699999999999999998645899999


Q ss_pred             EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ++.|+|..        .+++|  .+..+-+|=...
T Consensus       280 ~~~fnP~~--------~mf~s--a~s~l~fw~p~~  304 (311)
T KOG1446|consen  280 CVRFNPRY--------AMFVS--ASSNLVFWLPDE  304 (311)
T ss_pred             ccccCCce--------eeeee--cCceEEEEeccc
Confidence            99999975        45554  456688886553

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.7e-30  Score=204.42  Aligned_cols=324  Identities=18%  Similarity=0.295  Sum_probs=234.3

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ..++.|.||.+.|+.++.......+.|++.|.+.+||.++++.     ++..+.+|.+.|.++.|++.+..+++++.|..
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-----CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t  213 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-----CLATYTGHTGSVNSIKFHNSGLLLLTASGDET  213 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-----ceeeecccccceeeEEeccccceEEEccCCcc
Confidence            3577899999999999998877899999999999999999886     56777899999999999999999999998854


Q ss_pred             cceEE---eeccccccccccccccCCCC---CCceeec---cccccccee-EE---Eeecccc-cccCCCCCeEEEEeeC
Q 013578          162 GCSLY---MYGEEKAISTNEGKQQSKLP---GPEIKWE---HHKVHDKRA-IL---TLFGASA-TYGTADGSTIIASCSE  227 (440)
Q Consensus       162 ~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~-~~---~~~~~~~-~~~~~~~~~~l~s~~~  227 (440)
                      ...+.   -|...............+..   ......+   ...++..+. +.   .+.+... +-+...|+ .+++++.
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSW  292 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASW  292 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeec
Confidence            43222   11111111000000000000   0000000   001111111 11   1111111 11233344 8999999


Q ss_pred             CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF  307 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (440)
                      |.+..+||+++++.+..+.+|....+.++-+|..+++++.+.|.+.++||++..       ...+..|+||...|+++.|
T Consensus       293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-------I~sV~VFQGHtdtVTS~vF  365 (481)
T KOG0300|consen  293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-------IQSVAVFQGHTDTVTSVVF  365 (481)
T ss_pred             cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-------cceeeeecccccceeEEEE
Confidence            999999999999999999999999999999999999999999999999999733       2467889999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc
Q 013578          308 APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG  386 (440)
Q Consensus       308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~  386 (440)
                      .-+. .+++|+.|.+|++||+++....      +..        -.....++.++.+..++++|.-. +..|++||+...
T Consensus       366 ~~dd-~vVSgSDDrTvKvWdLrNMRsp------lAT--------IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  366 NTDD-RVVSGSDDRTVKVWDLRNMRSP------LAT--------IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             ecCC-ceeecCCCceEEEeeeccccCc------cee--------eecCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence            8654 5899999999999999865321      111        11234577899999999999876 579999999765


Q ss_pred             cc---hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          387 KV---LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       387 ~~---~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      ++   ...-..+|...|.|++|..+-+      ..-|+++|-|..+.=|++.....
T Consensus       431 RlaRlPrtsRqgHrRMV~c~AW~eehp------~cnLftcGFDR~v~gW~in~p~~  480 (481)
T KOG0300|consen  431 RLARLPRTSRQGHRRMVTCCAWLEEHP------ACNLFTCGFDRMVAGWKINTPTS  480 (481)
T ss_pred             ccccCCcccccccceeeeeeeccccCc------ccccccccccceeeeeEecccCC
Confidence            43   2223368999999999997742      14689999999999999987653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=8.2e-30  Score=209.58  Aligned_cols=262  Identities=23%  Similarity=0.364  Sum_probs=211.0

Q ss_pred             CCCCCCCCCcccCc----cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578           68 HSHGDKDQNKRHHP----LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA  143 (440)
Q Consensus        68 ~~~~~~~~~~~~~~----~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~  143 (440)
                      ..++..|++.-..+    +.+.+|+||+..|+.+.|+|+...+++++.|..|+||.......     ......|..+|+.
T Consensus       234 ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-----~~~~~~h~~~V~~  308 (506)
T KOG0289|consen  234 ILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-----PTSSRPHEEPVTG  308 (506)
T ss_pred             ceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-----cccccccccccee
Confidence            35666665554443    34788999999999999999999999999999999999876552     2445678899999


Q ss_pred             EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578          144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA  223 (440)
Q Consensus       144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  223 (440)
                      +..+|.|.                                                                     +|+
T Consensus       309 ls~h~tge---------------------------------------------------------------------Yll  319 (506)
T KOG0289|consen  309 LSLHPTGE---------------------------------------------------------------------YLL  319 (506)
T ss_pred             eeeccCCc---------------------------------------------------------------------EEE
Confidence            99888776                                                                     667


Q ss_pred             EeeCCceEEEEeCCCCceeeeeeC--CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578          224 SCSEGTDISIWHGKTGKLLGNVDT--NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA  301 (440)
Q Consensus       224 s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~  301 (440)
                      +++.|++..+.|++++..+.....  .+..+++.+|+|||..|.+|..||.++|||+....        .+..|.+|.++
T Consensus       320 sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--------~~a~Fpght~~  391 (506)
T KOG0289|consen  320 SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--------NVAKFPGHTGP  391 (506)
T ss_pred             EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--------ccccCCCCCCc
Confidence            777888888899999988766654  34568899999999999999999999999997665        67889999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEE
Q 013578          302 VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWL  381 (440)
Q Consensus       302 v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~  381 (440)
                      |..++|+.+|-+|++++.|+.|++||++.....       +.+..     . ....+..+.|.+.|.+|+.+ +..++||
T Consensus       392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~-------kt~~l-----~-~~~~v~s~~fD~SGt~L~~~-g~~l~Vy  457 (506)
T KOG0289|consen  392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNF-------KTIQL-----D-EKKEVNSLSFDQSGTYLGIA-GSDLQVY  457 (506)
T ss_pred             eeEEEeccCceEEEEEecCCeEEEEEehhhccc-------ceeec-----c-ccccceeEEEcCCCCeEEee-cceeEEE
Confidence            999999999999999999999999999965422       21111     1 11257889999999999987 4444444


Q ss_pred             EcC----CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          382 SVE----TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       382 d~~----~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      -..    .+..+..+ ..|.+..+++.|....        .+++++|.|..++++.+
T Consensus       458 ~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~a--------q~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  458 ICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHA--------QYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEecccccceeeehh-hhcccccceeeecccc--------eEEeeccchhheEEeec
Confidence            443    56677777 4788899999999887        89999999999999875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=2.2e-30  Score=209.34  Aligned_cols=295  Identities=19%  Similarity=0.268  Sum_probs=214.1

Q ss_pred             CCCCCCCCCCCCcccCcc---ccccccccCcceeEEEEccCC---CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578           65 PHSHSHGDKDQNKRHHPL---DVNTLKGHGDSVTGLCFSSDG---KCLATACADGVIRVHKLDDASSKSFKFLRINLPPG  138 (440)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~---~~~~l~~H~~~V~~l~~s~dg---~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~  138 (440)
                      ..-..++..|+..+.|..   .++++.||.++|..++|.-..   ..|+++|.|.++++|.++.++... .......+|.
T Consensus       115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~-~~~~~~~GHk  193 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV-KALKVCRGHK  193 (423)
T ss_pred             CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh-hHHhHhcccc
Confidence            445678899999999976   588899999999988886533   359999999999999998765432 2233344899


Q ss_pred             CCCceEEEccCCCeEEEEeecCCcceEEeeccccccc-cccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578          139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS-TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD  217 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (440)
                      ..|.++...+++..+++++.|   ..+.+|+...... ..+.............-..........+..+..+...+..++
T Consensus       194 ~~V~sVsv~~sgtr~~SgS~D---~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  194 RSVDSVSVDSSGTRFCSGSWD---TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             cceeEEEecCCCCeEEeeccc---ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            999999999999999999998   6788887222111 111000000000000000000111112222333333333444


Q ss_pred             CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578          218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                      .. .+++++.|.+|+.||+.++..+..+.. .....|+.++|..++|++|+.|..|++||.+.+....     ..+++.+
T Consensus       271 ~~-v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-----v~~s~~g  343 (423)
T KOG0313|consen  271 AT-VIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-----VSQSLIG  343 (423)
T ss_pred             CC-ceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce-----eEEeeec
Confidence            33 899999999999999999999888876 4568999999999999999999999999998875322     4667899


Q ss_pred             cccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCC
Q 013578          298 HKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS  376 (440)
Q Consensus       298 h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  376 (440)
                      |+..|.++.|+|... +|++++.|+++++||+++..             .+++...+|...|.++.|+..+-++..|.|+
T Consensus       344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k-------------~plydI~~h~DKvl~vdW~~~~~IvSGGaD~  410 (423)
T KOG0313|consen  344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK-------------APLYDIAGHNDKVLSVDWNEGGLIVSGGADN  410 (423)
T ss_pred             chhhhhheecCCCCceEEEEEecCCeEEEEEeccCC-------------CcceeeccCCceEEEEeccCCceEEeccCcc
Confidence            999999999999655 68999999999999999643             2456667788889999998766555556699


Q ss_pred             EEEEEEc
Q 013578          377 TLQWLSV  383 (440)
Q Consensus       377 ~i~i~d~  383 (440)
                      .|+++..
T Consensus       411 ~l~i~~~  417 (423)
T KOG0313|consen  411 KLRIFKG  417 (423)
T ss_pred             eEEEecc
Confidence            9999854

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.2e-30  Score=201.59  Aligned_cols=247  Identities=19%  Similarity=0.319  Sum_probs=200.0

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ++..+.+|.++|++++.  +|.++|+||.|-+|+|||+.....     +.....|.+.|+++.|.+.-.           
T Consensus        35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-----lg~ll~HagsitaL~F~~~~S-----------   96 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-----LGILLSHAGSITALKFYPPLS-----------   96 (362)
T ss_pred             ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-----hcceeccccceEEEEecCCcc-----------
Confidence            46788999999999999  689999999999999999987642     344556788999999987532           


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                                                                              ...|++|+.||.|.+|+....+++
T Consensus        97 --------------------------------------------------------~shLlS~sdDG~i~iw~~~~W~~~  120 (362)
T KOG0294|consen   97 --------------------------------------------------------KSHLLSGSDDGHIIIWRVGSWELL  120 (362)
T ss_pred             --------------------------------------------------------hhheeeecCCCcEEEEEcCCeEEe
Confidence                                                                    016899999999999999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~  322 (440)
                      ..++.|...|+.++++|.+++.++.+.|+.+++||+..++....      ..+.   ..-+.+.|+|.|.+++.++.+ .
T Consensus       121 ~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v------~~L~---~~at~v~w~~~Gd~F~v~~~~-~  190 (362)
T KOG0294|consen  121 KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV------LNLK---NKATLVSWSPQGDHFVVSGRN-K  190 (362)
T ss_pred             eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee------eccC---CcceeeEEcCCCCEEEEEecc-E
Confidence            99999999999999999999999999999999999987763221      1121   222349999999999988876 7


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEE
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITC  402 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~  402 (440)
                      |-+|.+.+.....+..               ....+.++.|-..+.+++.++++.|.+||..+..++..+ .+|...|.+
T Consensus       191 i~i~q~d~A~v~~~i~---------------~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~-~AH~~RVK~  254 (362)
T KOG0294|consen  191 IDIYQLDNASVFREIE---------------NPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEF-LAHENRVKD  254 (362)
T ss_pred             EEEEecccHhHhhhhh---------------ccccceeeeecCCceEEEecCCceEEEeccCCCccceee-ecchhheee
Confidence            8999988654332211               113355677777777777778999999999998888888 599999999


Q ss_pred             EEec--CCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          403 MAWA--PKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       403 v~~~--~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +.+-  |++        .+|+|+|+||.|+|||++..
T Consensus       255 i~~~~~~~~--------~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  255 IASYTNPEH--------EYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEecCCc--------eEEEEeccCceEEEEEcccc
Confidence            9854  344        79999999999999999754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.4e-30  Score=219.54  Aligned_cols=268  Identities=15%  Similarity=0.177  Sum_probs=224.2

Q ss_pred             CCCCCCCCCCCCCcccCccc----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC
Q 013578           64 KPHSHSHGDKDQNKRHHPLD----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG  139 (440)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~  139 (440)
                      ...-...+...+.+.+|+..    ++.++--.-+|++..|-+-.+++++|+.|..||||+..+.+     ....+..|..
T Consensus        24 tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-----kV~~FeAH~D   98 (794)
T KOG0276|consen   24 TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-----KVKTFEAHSD   98 (794)
T ss_pred             CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce-----eeEEeecccc
Confidence            33334555667778888765    45566678899999999999999999999999999999876     4566778889


Q ss_pred             CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578          140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS  219 (440)
Q Consensus       140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (440)
                      .|.+++.+|...                                                                    
T Consensus        99 yIR~iavHPt~P--------------------------------------------------------------------  110 (794)
T KOG0276|consen   99 YIRSIAVHPTLP--------------------------------------------------------------------  110 (794)
T ss_pred             ceeeeeecCCCC--------------------------------------------------------------------
Confidence            999999998754                                                                    


Q ss_pred             eEEEEeeCCceEEEEeCCCC-ceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578          220 TIIASCSEGTDISIWHGKTG-KLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       220 ~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                       +++++++|-+|++||.+.+ .+.+.+.+|...|.+++|+| |.+.+++++-|++|++|.+....        +..++.+
T Consensus       111 -~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~--------~nfTl~g  181 (794)
T KOG0276|consen  111 -YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH--------PNFTLEG  181 (794)
T ss_pred             -eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC--------Cceeeec
Confidence             6788888889999998754 67889999999999999999 67899999999999999997665        7889999


Q ss_pred             cccceEEEEEcCCC--CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-
Q 013578          298 HKSAVTWLCFAPNS--EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-  374 (440)
Q Consensus       298 h~~~v~~~~~~p~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-  374 (440)
                      |...|+|+.|-+.|  .+|++|+.|.+|+|||.++..|++              ...||...|..+.|+|.-.++++|+ 
T Consensus       182 HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~--------------TLeGHt~Nvs~v~fhp~lpiiisgsE  247 (794)
T KOG0276|consen  182 HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ--------------TLEGHTNNVSFVFFHPELPIIISGSE  247 (794)
T ss_pred             cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH--------------HhhcccccceEEEecCCCcEEEEecC
Confidence            99999999998844  699999999999999999887753              3357777799999999999999987 


Q ss_pred             CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ||+++||+..+-++...+. -..+.|+|++-.+.+        +.++.|.+.|.|. .++-..
T Consensus       248 DGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~--------~~i~vG~Deg~i~-v~lgre  300 (794)
T KOG0276|consen  248 DGTVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGD--------GKIAVGFDEGSVT-VKLGRE  300 (794)
T ss_pred             CccEEEecCcceehhhhhh-cCCceEEEEeecCCC--------CeEEEeccCCcEE-EEccCC
Confidence            9999999999999988884 567799999999887        6788887666554 344333

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.2e-29  Score=190.81  Aligned_cols=258  Identities=14%  Similarity=0.189  Sum_probs=208.3

Q ss_pred             CCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578           69 SHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV  144 (440)
Q Consensus        69 ~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v  144 (440)
                      .+...|+++++|+.    +++++.||...|..++.+.|+..+++|+.|+.|.+||++++.     ..+...+|.+.|..+
T Consensus        33 ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk-----v~Rr~rgH~aqVNtV  107 (307)
T KOG0316|consen   33 LTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK-----VDRRFRGHLAQVNTV  107 (307)
T ss_pred             EEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe-----eeeecccccceeeEE
Confidence            45578899999975    589999999999999999999999999999999999999986     567888999999999


Q ss_pred             EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578          145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS  224 (440)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  224 (440)
                      +|+.+..                                                                     .+++
T Consensus       108 ~fNeesS---------------------------------------------------------------------Vv~S  118 (307)
T KOG0316|consen  108 RFNEESS---------------------------------------------------------------------VVAS  118 (307)
T ss_pred             EecCcce---------------------------------------------------------------------EEEe
Confidence            9986543                                                                     7889


Q ss_pred             eeCCceEEEEeCCCC--ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce
Q 013578          225 CSEGTDISIWHGKTG--KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV  302 (440)
Q Consensus       225 ~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v  302 (440)
                      |+.|..+++||.++.  ++++.+......|.++.++  +..+++|+.||+++.||++.+.        .....  ...+|
T Consensus       119 gsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~--------l~sDy--~g~pi  186 (307)
T KOG0316|consen  119 GSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT--------LSSDY--FGHPI  186 (307)
T ss_pred             ccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce--------eehhh--cCCcc
Confidence            999999999998754  6788887777778777765  6789999999999999998875        33333  34689


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEE
Q 013578          303 TWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWL  381 (440)
Q Consensus       303 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~  381 (440)
                      +|+.|+++++..+.++.|+++++.|-.+++.+.......           .... -..++++.....+++|+ ||.+++|
T Consensus       187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk-----------n~ey-kldc~l~qsdthV~sgSEDG~Vy~w  254 (307)
T KOG0316|consen  187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK-----------NMEY-KLDCCLNQSDTHVFSGSEDGKVYFW  254 (307)
T ss_pred             eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc-----------ccee-eeeeeecccceeEEeccCCceEEEE
Confidence            999999999999999999999999999887764322111           1111 22466777777888877 8999999


Q ss_pred             EcCCccchhhhhccccCC-eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          382 SVETGKVLDTAEKAHEGE-ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       382 d~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      |+.....+..+. .|... |.+++++|..        ..|+++. ++.+..|.-
T Consensus       255 dLvd~~~~sk~~-~~~~v~v~dl~~hp~~--------~~f~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  255 DLVDETQISKLS-VVSTVIVTDLSCHPTM--------DDFITAT-GHGDLFWYQ  298 (307)
T ss_pred             Eeccceeeeeec-cCCceeEEeeecccCc--------cceeEec-CCceeceee
Confidence            999999998884 56665 8999999987        5566665 444666643

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=5.6e-29  Score=224.75  Aligned_cols=239  Identities=15%  Similarity=0.160  Sum_probs=175.1

Q ss_pred             ccccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcc---eeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578           83 DVNTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKS---FKFLRINLPPGGPPTAVAFADNATSIVVATH  158 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  158 (440)
                      ++..+.+|.+.|.+++|+|+ +++||||+.||+|+|||+.+.....   ........+|...|.+++|+|++..      
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~------  139 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY------  139 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe------
Confidence            56789999999999999996 7899999999999999997643210   0112234567778888888876542      


Q ss_pred             cCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC
Q 013578          159 NLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT  238 (440)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~  238 (440)
                                                                                    ++++++.|++|++||+++
T Consensus       140 --------------------------------------------------------------iLaSgS~DgtIrIWDl~t  157 (568)
T PTZ00420        140 --------------------------------------------------------------IMCSSGFDSFVNIWDIEN  157 (568)
T ss_pred             --------------------------------------------------------------EEEEEeCCCeEEEEECCC
Confidence                                                                          567888999999999999


Q ss_pred             CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE-----EEEcCCCCE
Q 013578          239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW-----LCFAPNSEQ  313 (440)
Q Consensus       239 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~-----~~~~p~~~~  313 (440)
                      ++.+..+. +...+.+++|+|+|.+|++++.|+.|+|||++.+.        .+..+.+|.+.+.+     ..|++++.+
T Consensus       158 g~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~--------~i~tl~gH~g~~~s~~v~~~~fs~d~~~  228 (568)
T PTZ00420        158 EKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE--------IASSFHIHDGGKNTKNIWIDGLGGDDNY  228 (568)
T ss_pred             CcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc--------EEEEEecccCCceeEEEEeeeEcCCCCE
Confidence            98877775 45679999999999999999999999999998765        56778889876543     335688899


Q ss_pred             EEEEeCCC----cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccc
Q 013578          314 IITASKDG----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKV  388 (440)
Q Consensus       314 l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~  388 (440)
                      |++++.|+    +|+|||++....      ....     .....+...+......++|.++++| .|+.|++|++..+..
T Consensus       229 IlTtG~d~~~~R~VkLWDlr~~~~------pl~~-----~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~  297 (568)
T PTZ00420        229 ILSTGFSKNNMREMKLWDLKNTTS------ALVT-----MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI  297 (568)
T ss_pred             EEEEEcCCCCccEEEEEECCCCCC------ceEE-----EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence            99988774    799999985321      1111     1111112222223335568877776 599999999987753


Q ss_pred             hhhhhccccCCeEEEEecCCC
Q 013578          389 LDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       389 ~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      ...-...+..++.+++|.|+.
T Consensus       298 ~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        298 RKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EeecccccCCCccceEEcccc
Confidence            222222366788999999984

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.8e-27  Score=179.58  Aligned_cols=308  Identities=15%  Similarity=0.211  Sum_probs=223.9

Q ss_pred             ccCccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCC----------CCcceeeEEecCCCCCCCceEEEc
Q 013578           78 RHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDA----------SSKSFKFLRINLPPGGPPTAVAFA  147 (440)
Q Consensus        78 ~~~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~----------~~~~~~~~~~~~~~~~~v~~v~~~  147 (440)
                      +..-..+..|+ -+..|++++|+|.|.+.+.|+..+++||-....-          ...+....+....|.+.|.+.+|+
T Consensus        20 k~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws   98 (350)
T KOG0641|consen   20 KKHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS   98 (350)
T ss_pred             ccceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence            33334455554 4678999999999999999999999999765321          112233445566788999999999


Q ss_pred             cCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-
Q 013578          148 DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-  226 (440)
Q Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-  226 (440)
                      |+|..+++++.+.....+.+.. +..          ...+....++.+.+..........       ...+..+|++++ 
T Consensus        99 ~~geliatgsndk~ik~l~fn~-dt~----------~~~g~dle~nmhdgtirdl~fld~-------~~s~~~il~s~ga  160 (350)
T KOG0641|consen   99 PCGELIATGSNDKTIKVLPFNA-DTC----------NATGHDLEFNMHDGTIRDLAFLDD-------PESGGAILASAGA  160 (350)
T ss_pred             CccCeEEecCCCceEEEEeccc-ccc----------cccCcceeeeecCCceeeeEEecC-------CCcCceEEEecCC
Confidence            9999999999884333332221 111          122334444444433222221111       223343666654 


Q ss_pred             CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee----c---cc
Q 013578          227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK----G---HK  299 (440)
Q Consensus       227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~---h~  299 (440)
                      .|..|++-|..+|+..+.+.+|.+.|.++ ++-+|-.+++|+.|.+|++||++...        ++..+.    +   ..
T Consensus       161 gdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~--------~v~~l~~~~~~~gles  231 (350)
T KOG0641|consen  161 GDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS--------CVNTLDNDFHDGGLES  231 (350)
T ss_pred             CcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc--------eeeeccCcccCCCccc
Confidence            57889999999999999999999988775 56678999999999999999998665        333332    1   23


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578          300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL  378 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i  378 (440)
                      +.|.+++..|.|++|++|-.|....+||++.++.++              ....|...|.++.|+|...||.+++ |..|
T Consensus       232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq--------------~f~phsadir~vrfsp~a~yllt~syd~~i  297 (350)
T KOG0641|consen  232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ--------------RFHPHSADIRCVRFSPGAHYLLTCSYDMKI  297 (350)
T ss_pred             ceeEEEEECCCcceeeeccCCCceEEEEeeCCceee--------------eeCCCccceeEEEeCCCceEEEEecccceE
Confidence            679999999999999999999999999999775432              2345667799999999999999987 9999


Q ss_pred             EEEEcCCc---cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          379 QWLSVETG---KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       379 ~i~d~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ++-|+...   ++.......|.+.+..+.|+|..        --+++.+.|.++.+|-++
T Consensus       298 kltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d--------~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  298 KLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD--------FSFISSSADKTATLWALN  349 (350)
T ss_pred             EEeecccchhhcCceEEEEeccCceEEEEecCcc--------ceeeeccCcceEEEeccC
Confidence            99998642   22222224689999999999997        788999999999999875

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=5.1e-29  Score=227.55  Aligned_cols=308  Identities=18%  Similarity=0.210  Sum_probs=224.4

Q ss_pred             ccc-CcceeEEEEccCCCEEEEee--CCCcEEEEecCCCCC-------cceeeEEecCCCCCCCceEEEccCCCeEEEEe
Q 013578           88 KGH-GDSVTGLCFSSDGKCLATAC--ADGVIRVHKLDDASS-------KSFKFLRINLPPGGPPTAVAFADNATSIVVAT  157 (440)
Q Consensus        88 ~~H-~~~V~~l~~s~dg~~l~t~s--~dg~v~vW~~~~~~~-------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  157 (440)
                      -+| +..|.+++.+|||..+|||+  .||.++||+.+.-..       ...+.+.....|.+.|.|+.|+|||++|++++
T Consensus         9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS   88 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS   88 (942)
T ss_pred             cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence            345 56799999999999999999  999999999754211       01223344567889999999999999999999


Q ss_pred             ecCCcceEEeeccccccccccccccCCCCCCceeecc---cccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEE
Q 013578          158 HNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEH---HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIW  234 (440)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vw  234 (440)
                      .|   ..+.+|.... ......-...........|..   ...|...       ...+.++|++. ++++++.|++|.+|
T Consensus        89 DD---~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D-------V~Dv~Wsp~~~-~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   89 DD---RLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSD-------VLDVNWSPDDS-LLVSVSLDNSVIIW  156 (942)
T ss_pred             Cc---ceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCc-------cceeccCCCcc-EEEEecccceEEEE
Confidence            88   6777777664 111111111111112223322   1122222       23344588888 99999999999999


Q ss_pred             eCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec------cccceEEEEEc
Q 013578          235 HGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG------HKSAVTWLCFA  308 (440)
Q Consensus       235 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~  308 (440)
                      |..+.+.+..+.+|...|..+.|.|-|++||+-+.|++|++|++..-.        ..+.+.+      .......+.|+
T Consensus       157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~--------i~k~It~pf~~~~~~T~f~RlSWS  228 (942)
T KOG0973|consen  157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG--------IEKSITKPFEESPLTTFFLRLSWS  228 (942)
T ss_pred             ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce--------eeEeeccchhhCCCcceeeecccC
Confidence            999999999999999999999999999999999999999999964321        2222222      23457889999


Q ss_pred             CCCCEEEEEeC----CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-----CC-----------
Q 013578          309 PNSEQIITASK----DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-----GK-----------  368 (440)
Q Consensus       309 p~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~-----------  368 (440)
                      |||.+|++.-.    -.++.|.+-.+-+.              ....-||..++.++.|+|.     .+           
T Consensus       229 PDG~~las~nA~n~~~~~~~IieR~tWk~--------------~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y  294 (942)
T KOG0973|consen  229 PDGHHLASPNAVNGGKSTIAIIERGTWKV--------------DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY  294 (942)
T ss_pred             CCcCeecchhhccCCcceeEEEecCCcee--------------eeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence            99999988642    23566655432211              1233477778999999872     11           


Q ss_pred             -EEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          369 -ILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       369 -~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                       .+|+|+ |+.|.||.....+++..+..-....|.+++|+|||        ..|+.+|.||+|.+..++..
T Consensus       295 ~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG--------~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  295 CIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDG--------FSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             EEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCC--------CeEEEEecCCeEEEEEcchH
Confidence             455666 99999999999988877755567789999999999        89999999999999998754

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=5.9e-29  Score=223.75  Aligned_cols=250  Identities=15%  Similarity=0.120  Sum_probs=184.1

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcc--------eeeEEecCCCCCCCceEEEcc-CCCeEEEEeecC
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKS--------FKFLRINLPPGGPPTAVAFAD-NATSIVVATHNL  160 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~--------~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~~~  160 (440)
                      |-..|+....++|+..+++++.+.....|+...+....        ........+|.+.|.+++|+| ++.         
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~---------   89 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ---------   89 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC---------
Confidence            45667777778888888888888888888765432100        000112345666777777766 322         


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-  239 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-  239 (440)
                                                                                  +|++++.|++|++||+.++ 
T Consensus        90 ------------------------------------------------------------~LaSgS~DgtIkIWdi~~~~  109 (493)
T PTZ00421         90 ------------------------------------------------------------KLFTASEDGTIMGWGIPEEG  109 (493)
T ss_pred             ------------------------------------------------------------EEEEEeCCCEEEEEecCCCc
Confidence                                                                        7889999999999999765 


Q ss_pred             ------ceeeeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC
Q 013578          240 ------KLLGNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE  312 (440)
Q Consensus       240 ------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  312 (440)
                            +.+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+..+.        ....+.+|...|.+++|+|+|.
T Consensus       110 ~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--------~~~~l~~h~~~V~sla~spdG~  181 (493)
T PTZ00421        110 LTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--------AVEVIKCHSDQITSLEWNLDGS  181 (493)
T ss_pred             cccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--------EEEEEcCCCCceEEEEEECCCC
Confidence                  3466788899999999999985 799999999999999997654        5667888999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCe-eeeeeEEeCCCCCEEEE-e----cCCEEEEEEcCCc
Q 013578          313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT-LQYDRLSLSSDGKILAA-T----HGSTLQWLSVETG  386 (440)
Q Consensus       313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~----~~~~i~i~d~~~~  386 (440)
                      +|++++.|++|++||++++..+..              ..+|. .....+.|.+++..+++ |    .|+.|++||+++.
T Consensus       182 lLatgs~Dg~IrIwD~rsg~~v~t--------------l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        182 LLCTTSKDKKLNIIDPRDGTIVSS--------------VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             EEEEecCCCEEEEEECCCCcEEEE--------------EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence            999999999999999987643211              01111 12345778888776664 3    2689999999876


Q ss_pred             cchhhhhc-cccCCeEEEEecCCCCCCCCCcceEEEEee-CCCeEEEEeCCCCC
Q 013578          387 KVLDTAEK-AHEGEITCMAWAPKTIPMGNQQVSVLATSS-VDKKVKLWLAPSLE  438 (440)
Q Consensus       387 ~~~~~~~~-~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~i~vw~~~~~~  438 (440)
                      ........ .+...+....|++++        .+|++++ .|+.|++|++.+++
T Consensus       248 ~~p~~~~~~d~~~~~~~~~~d~d~--------~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        248 ASPYSTVDLDQSSALFIPFFDEDT--------NLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             CCceeEeccCCCCceEEEEEcCCC--------CEEEEEEeCCCeEEEEEeeCCc
Confidence            53332212 233456667889998        7888877 59999999998765

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.2e-29  Score=210.14  Aligned_cols=242  Identities=20%  Similarity=0.319  Sum_probs=191.7

Q ss_pred             CcceeEEEEccCCC--EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578           91 GDSVTGLCFSSDGK--CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY  168 (440)
Q Consensus        91 ~~~V~~l~~s~dg~--~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~  168 (440)
                      .+.|.+++|+|...  +.+|+|  -.+.||+..+....     +........+.++.|-.||+                 
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~-----k~~srFk~~v~s~~fR~DG~-----------------   81 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVR-----KTFSRFKDVVYSVDFRSDGR-----------------   81 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhh-----hhHHhhccceeEEEeecCCe-----------------
Confidence            46899999999543  344444  35899988765422     22223346677777766654                 


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN  248 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  248 (440)
                                                                          ++++|...|.|++||+.+...++.+..|
T Consensus        82 ----------------------------------------------------LlaaGD~sG~V~vfD~k~r~iLR~~~ah  109 (487)
T KOG0310|consen   82 ----------------------------------------------------LLAAGDESGHVKVFDMKSRVILRQLYAH  109 (487)
T ss_pred             ----------------------------------------------------EEEccCCcCcEEEeccccHHHHHHHhhc
Confidence                                                                7888888999999998877788999999


Q ss_pred             CCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC-CEEEEEeCCCcEEEE
Q 013578          249 QLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQIITASKDGTLRVW  326 (440)
Q Consensus       249 ~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iw  326 (440)
                      +.++..+.|+|+ +..|++|++|+.+++||+....        ....+.+|++.|.|.+|+|-. ..++|||.||.|++|
T Consensus       110 ~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  110 QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             cCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            999999999995 4567788888999999986553        356789999999999999954 578999999999999


Q ss_pred             ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578          327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       327 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~  406 (440)
                      |++....        .      ...-.|..+|..+.+-|.|..+|+++++.+++||+.+|..+......|...|+|+++.
T Consensus       182 DtR~~~~--------~------v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~  247 (487)
T KOG0310|consen  182 DTRSLTS--------R------VVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLA  247 (487)
T ss_pred             EeccCCc--------e------eEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEee
Confidence            9985421        1      1112456678899999999999999999999999996655444434599999999999


Q ss_pred             CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          407 PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .++        ..|++||-|+.|++|++.+.+
T Consensus       248 s~~--------~rLlS~sLD~~VKVfd~t~~K  271 (487)
T KOG0310|consen  248 SDS--------TRLLSGSLDRHVKVFDTTNYK  271 (487)
T ss_pred             cCC--------ceEeecccccceEEEEccceE
Confidence            988        899999999999999977643

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.3e-29  Score=208.45  Aligned_cols=247  Identities=19%  Similarity=0.299  Sum_probs=207.0

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      .+++.-..+.|.+++|-.||++||.|+..|.|+|+|..+.     ..++....|..++..+.|+|.+..           
T Consensus        61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-----~iLR~~~ah~apv~~~~f~~~d~t-----------  124 (487)
T KOG0310|consen   61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-----VILRQLYAHQAPVHVTKFSPQDNT-----------  124 (487)
T ss_pred             hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-----HHHHHHhhccCceeEEEecccCCe-----------
Confidence            4455567889999999999999999999999999995542     245666788899999999886542           


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                                                                               ++++|++|+.+++||+.+.....
T Consensus       125 ---------------------------------------------------------~l~s~sDd~v~k~~d~s~a~v~~  147 (487)
T KOG0310|consen  125 ---------------------------------------------------------MLVSGSDDKVVKYWDLSTAYVQA  147 (487)
T ss_pred             ---------------------------------------------------------EEEecCCCceEEEEEcCCcEEEE
Confidence                                                                     78899999999999999988777


Q ss_pred             eeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578          244 NVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~  322 (440)
                      .+.+|...|.|.+|+|. +..+++|+.||+|++||.+...       ..+..+. |..+|..+.+-|.|..+++++.+ .
T Consensus       148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-------~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~  218 (487)
T KOG0310|consen  148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-------SRVVELN-HGCPVESVLALPSGSLIASAGGN-S  218 (487)
T ss_pred             EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-------ceeEEec-CCCceeeEEEcCCCCEEEEcCCC-e
Confidence            88999999999999995 5589999999999999998764       1445554 89999999999999999999864 8


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeE
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEIT  401 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~  401 (440)
                      |++||+-++..+             ......|...|+|+.+..++..|.+++ |+.+++||+.+.+.+....  -.++|.
T Consensus       219 vkVWDl~~G~ql-------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~~~pvL  283 (487)
T KOG0310|consen  219 VKVWDLTTGGQL-------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--YPGPVL  283 (487)
T ss_pred             EEEEEecCCcee-------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--ccccee
Confidence            999999866432             112223677899999999999888877 9999999999999988874  789999


Q ss_pred             EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      +++.+|++        ..++.|-.||.+.+=+..
T Consensus       284 siavs~dd--------~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  284 SIAVSPDD--------QTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             eEEecCCC--------ceEEEecccceeeeehhh
Confidence            99999998        899999999988776443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=4.1e-28  Score=236.08  Aligned_cols=275  Identities=15%  Similarity=0.168  Sum_probs=198.6

Q ss_pred             CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCcee
Q 013578          112 DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIK  191 (440)
Q Consensus       112 dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (440)
                      +|.+++|+.................|.+.|.+++|+|+++++++++.+   ..+.+|+.........     ....+...
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D---~~I~iwd~~~~~~~~~-----~~~~~~~~  528 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVN---KKIKIFECESIIKDGR-----DIHYPVVE  528 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEECCccccccc-----ccccceEE
Confidence            677888888754322111111234478899999999999999999887   5677777543210000     00000000


Q ss_pred             ecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecC
Q 013578          192 WEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFT  270 (440)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d  270 (440)
                      ..           .......+.+.+....++++++.|++|++||+.+++.+..+..|...|.+++|+| ++.+|++|+.|
T Consensus       529 ~~-----------~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D  597 (793)
T PLN00181        529 LA-----------SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD  597 (793)
T ss_pred             ec-----------ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC
Confidence            00           0011112233443333899999999999999999999999999999999999997 78999999999


Q ss_pred             CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc-CCCCEEEEEeCCCcEEEEecCccccccCCCCcccccccccc
Q 013578          271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA-PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLL  349 (440)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  349 (440)
                      |.|++||++.+.        .+..+..+ ..|.++.|+ +++.+|++|+.||.|++||++....             +..
T Consensus       598 g~v~iWd~~~~~--------~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-------------~~~  655 (793)
T PLN00181        598 GSVKLWSINQGV--------SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-------------PLC  655 (793)
T ss_pred             CEEEEEECCCCc--------EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-------------cce
Confidence            999999997654        44555543 679999995 5789999999999999999985421             111


Q ss_pred             CCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCc------cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEE
Q 013578          350 DSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETG------KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT  422 (440)
Q Consensus       350 ~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~------~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t  422 (440)
                      ...+|...|..+.|. ++.+|+++ .|+.|++||+..+      +.+..+ .+|...+.+++|+|++        .+|++
T Consensus       656 ~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s~~~--------~~las  725 (793)
T PLN00181        656 TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGHTNVKNFVGLSVSD--------GYIAT  725 (793)
T ss_pred             EecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCCCCCeeEEEEcCCC--------CEEEE
Confidence            223566778899997 56666665 5999999999753      455566 5899999999999998        89999


Q ss_pred             eeCCCeEEEEeCCCC
Q 013578          423 SSVDKKVKLWLAPSL  437 (440)
Q Consensus       423 ~~~Dg~i~vw~~~~~  437 (440)
                      |+.|+.|++|+....
T Consensus       726 gs~D~~v~iw~~~~~  740 (793)
T PLN00181        726 GSETNEVFVYHKAFP  740 (793)
T ss_pred             EeCCCEEEEEECCCC
Confidence            999999999997643

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.6e-28  Score=203.49  Aligned_cols=263  Identities=16%  Similarity=0.263  Sum_probs=192.4

Q ss_pred             cccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           84 VNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      +...--|.+.|+.+++-|.. ..+||.+..+.|.|||.........            ... .+.|+  ..+.+...   
T Consensus       117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~------------~~~-~~~Pd--l~L~gH~~---  178 (422)
T KOG0264|consen  117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK------------ASG-ECRPD--LRLKGHEK---  178 (422)
T ss_pred             EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc------------ccc-cCCCc--eEEEeecc---
Confidence            33344699999999999955 5677788899999999875432210            000 22222  11111110   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--  240 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--  240 (440)
                                             .+....|                      ++.....+++++.|++|++||+....  
T Consensus       179 -----------------------eg~glsW----------------------n~~~~g~Lls~~~d~~i~lwdi~~~~~~  213 (422)
T KOG0264|consen  179 -----------------------EGYGLSW----------------------NRQQEGTLLSGSDDHTICLWDINAESKE  213 (422)
T ss_pred             -----------------------ccccccc----------------------ccccceeEeeccCCCcEEEEeccccccC
Confidence                                   0001112                      22222379999999999999987542  


Q ss_pred             -----eeeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCE
Q 013578          241 -----LLGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQ  313 (440)
Q Consensus       241 -----~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~  313 (440)
                           ....+..|...|..++|++. ..+|++++.|+.+.|||+|....      .......+|.+.|+|++|+| ++..
T Consensus       214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~------~~~~~~~ah~~~vn~~~fnp~~~~i  287 (422)
T KOG0264|consen  214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS------KPSHSVKAHSAEVNCVAFNPFNEFI  287 (422)
T ss_pred             CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC------CCcccccccCCceeEEEeCCCCCce
Confidence                 34567889999999999994 56788899999999999985211      25667788999999999999 5567


Q ss_pred             EEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEE-ecCCEEEEEEcCCccchh-
Q 013578          314 IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAA-THGSTLQWLSVETGKVLD-  390 (440)
Q Consensus       314 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~-~~~~~i~i~d~~~~~~~~-  390 (440)
                      |||||.|++|.+||+|+...             +++...+|...|.++.|||+.. .||+ |.|+.+.+||+..-...+ 
T Consensus       288 lAT~S~D~tV~LwDlRnL~~-------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~  354 (422)
T KOG0264|consen  288 LATGSADKTVALWDLRNLNK-------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS  354 (422)
T ss_pred             EEeccCCCcEEEeechhccc-------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence            89999999999999996432             5667788999999999999876 5555 459999999985432111 


Q ss_pred             ------------hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          391 ------------TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       391 ------------~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                                  -+..||...|..+.|+|+.+       ..+++.++|+.+.||++.
T Consensus       355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~eP-------W~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP-------WTIASVAEDNILQIWQMA  404 (422)
T ss_pred             hhhhccCCcceeEEecCcccccccccCCCCCC-------eEEEEecCCceEEEeecc
Confidence                        12268999999999999975       788999999999999987

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.4e-28  Score=200.05  Aligned_cols=292  Identities=22%  Similarity=0.316  Sum_probs=218.4

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCC-eEEEEeecCCcceEEeec
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNAT-SIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~~~~~~~~~~~~  169 (440)
                      .+.|+++.|+|....|++|+.||+++||.++......   +....-...+|.+.+|.|+|. .+++++..   ..++.|+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~---lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr---ky~ysyD  286 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK---LQSIHLEKFPIQKAEFAPNGHSVIFTSGRR---KYLYSYD  286 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChh---heeeeeccCccceeeecCCCceEEEecccc---eEEEEee
Confidence            5789999999999999999999999999998765542   233333457899999999999 66666554   6778888


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ  249 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  249 (440)
                      ........-...              .+...+.+      ...-.+++++ +++..+..|.|.+....+++.+..++. .
T Consensus       287 le~ak~~k~~~~--------------~g~e~~~~------e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~Ki-e  344 (514)
T KOG2055|consen  287 LETAKVTKLKPP--------------YGVEEKSM------ERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKI-E  344 (514)
T ss_pred             ccccccccccCC--------------CCcccchh------heeEecCCCC-eEEEcccCceEEeehhhhhhhhheeee-c
Confidence            755422111110              00110000      0111267777 899999999999999999999988876 5


Q ss_pred             CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce--EEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV--TWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      +.+..++|+.+++.|++.+.+|.|.+||++...        +++.+.. .+.|  ++++.++++.+||+|+..|.|.|||
T Consensus       345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~--------~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS--------CLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             cEEeeEEEecCCcEEEEEcCCceEEEEecCCcc--------eEEEEee-cCccceeeeeecCCCceEEeccCcceEEEec
Confidence            678999999999999999999999999998764        5665553 3334  5677789999999999999999999


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec---CCEEEEEEcCCccchhhhh--ccccCCeEE
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH---GSTLQWLSVETGKVLDTAE--KAHEGEITC  402 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~~~i~i~d~~~~~~~~~~~--~~h~~~v~~  402 (440)
                      .++...-        .-+.|+.....-...|+.+.|++|+++||.++   .+.+++..+.+......+.  ...-+.|+|
T Consensus       416 ~~s~~~s--------~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc  487 (514)
T KOG2055|consen  416 GNSCFAS--------TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTC  487 (514)
T ss_pred             cchhhcc--------CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEE
Confidence            8753221        11223333344456689999999999999876   5789999888877665543  123357999


Q ss_pred             EEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          403 MAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       403 v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      |+|+|.+        .+|+.|..+|.+.+|.+.
T Consensus       488 ~aFSP~s--------G~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  488 MAFSPNS--------GYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEecCCC--------ceEEeecCCCceeeEeec
Confidence            9999988        799999999999999874

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1e-27  Score=214.96  Aligned_cols=252  Identities=19%  Similarity=0.266  Sum_probs=199.1

Q ss_pred             cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578           88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM  167 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~  167 (440)
                      .+|+..-+.|+|.|+|++|+|++.||.|++|+......++. .+.   .++..|.+++-                     
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-ti~---~~g~~v~~ia~---------------------   64 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-TID---ISGELVSSIAC---------------------   64 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-hhh---ccCceeEEEee---------------------
Confidence            47999999999999999999999999999999876532110 000   02222222221                     


Q ss_pred             eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT  247 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  247 (440)
                                                                       .+. +|++|+.+++|.+|...+++.-..+..
T Consensus        65 -------------------------------------------------~s~-~f~~~s~~~tv~~y~fps~~~~~iL~R   94 (933)
T KOG1274|consen   65 -------------------------------------------------YSN-HFLTGSEQNTVLRYKFPSGEEDTILAR   94 (933)
T ss_pred             -------------------------------------------------ccc-ceEEeeccceEEEeeCCCCCccceeee
Confidence                                                             111 799999999999999988876555555


Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      ..-++++++++-+|+++|.|+.|-.|++-++....        ....+++|.++|.++.|+|++.+||+.+-||.|++||
T Consensus        95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s--------~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS--------QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             eeccceEEEEecCCcEEEeecCceeEEEEeccccc--------hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence            56789999999999999999999999999987665        6778999999999999999999999999999999999


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-CCEEEEecCCEEEEEEcCCccchhhhhcccc-CCeEEEEe
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-GKILAATHGSTLQWLSVETGKVLDTAEKAHE-GEITCMAW  405 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~-~~v~~v~~  405 (440)
                      +..+.+........+....      .....+..++|+|+ |.+++.+.++.|.+|+..+++....+...+. ..+.++.|
T Consensus       167 ~~~~~~~~tl~~v~k~n~~------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w  240 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEF------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW  240 (933)
T ss_pred             cccchhhhhcccCCccccc------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence            9987665443333222211      11345778999999 5566678899999999999998877754443 34999999


Q ss_pred             cCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          406 APKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +|+|        .|||+++.||.|.|||.++
T Consensus       241 sPnG--------~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  241 SPNG--------KYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cCCC--------cEEeeeccCCcEEEEeccc
Confidence            9999        9999999999999999985

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.4e-28  Score=202.51  Aligned_cols=267  Identities=22%  Similarity=0.234  Sum_probs=207.3

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      +..+..|.-+|.|++++||+++.++++.||+|.=|++.++..... ...    . ..|....+.|-.             
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~-i~~----~-~ev~k~~~~~~k-------------  195 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRY-IIE----R-DEVLKSHGNPLK-------------  195 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCccccc-ccc----c-chhhhhccCCCC-------------
Confidence            456778999999999999999999999999999999987753210 000    0 011000010000             


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                                                ..+   +.|....+..       +.++||+ +|++|+.|..|.||+..+.+.++
T Consensus       196 --------------------------~~r---~~h~keil~~-------avS~Dgk-ylatgg~d~~v~Iw~~~t~ehv~  238 (479)
T KOG0299|consen  196 --------------------------ESR---KGHVKEILTL-------AVSSDGK-YLATGGRDRHVQIWDCDTLEHVK  238 (479)
T ss_pred             --------------------------ccc---ccccceeEEE-------EEcCCCc-EEEecCCCceEEEecCcccchhh
Confidence                                      000   1222222222       2377887 99999999999999999999999


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL  323 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i  323 (440)
                      .+.+|...|.+++|-.....|++++.|+.|++|++....        .+.++.+|++.|.+|.....++.+..|+.|+++
T Consensus       239 ~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s--------~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~  310 (479)
T KOG0299|consen  239 VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS--------YVETLYGHQDGVLGIDALSRERCVTVGGRDRTV  310 (479)
T ss_pred             cccccccceeeeeeecCccceeeeecCCceEEEehhHhH--------HHHHHhCCccceeeechhcccceEEecccccee
Confidence            999999999999999999999999999999999996554        678899999999999998888888888899999


Q ss_pred             EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhcccc------
Q 013578          324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHE------  397 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~------  397 (440)
                      ++|++.....+               ...++...+.|++|-.+..++..+++|.|.+|++...+++.....+|.      
T Consensus       311 rlwKi~eesql---------------ifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~  375 (479)
T KOG0299|consen  311 RLWKIPEESQL---------------IFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELD  375 (479)
T ss_pred             EEEecccccee---------------eeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcc
Confidence            99999643222               112335567889999888888888899999999999988877655553      


Q ss_pred             -----CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          398 -----GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       398 -----~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                           .-|++++..|..        .++++|+.+|.||+|.+..+
T Consensus       376 ~~~~~~Witsla~i~~s--------dL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  376 PVNGNFWITSLAVIPGS--------DLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ccccccceeeeEecccC--------ceEEecCCCCceEEEEecCC
Confidence                 158899999987        89999999999999999876

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.7e-28  Score=186.26  Aligned_cols=188  Identities=18%  Similarity=0.297  Sum_probs=156.0

Q ss_pred             EEEEeeCCceEEEEeCCC-CceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          221 IIASCSEGTDISIWHGKT-GKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      .+++++.||++++||+.. ..++..++.|...|.++.|++ +++.+++++-|++|++|+....+        .+.++.+|
T Consensus        75 ~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--------Sv~Tf~gh  146 (311)
T KOG0277|consen   75 QVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--------SVQTFNGH  146 (311)
T ss_pred             eEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc--------ceEeecCC
Confidence            788899999999999653 357888999999999999998 56677888999999999987665        68889999


Q ss_pred             ccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec-C
Q 013578          299 KSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH-G  375 (440)
Q Consensus       299 ~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~  375 (440)
                      ...|...+|+| ..+.++++|.|+++++||++....       ..       ....|..++.++.|+.-.. .|++|+ |
T Consensus       147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-------~~-------~i~ah~~Eil~cdw~ky~~~vl~Tg~vd  212 (311)
T KOG0277|consen  147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-------FM-------SIEAHNSEILCCDWSKYNHNVLATGGVD  212 (311)
T ss_pred             ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-------ee-------EEEeccceeEeecccccCCcEEEecCCC
Confidence            99999999999 567899999999999999984321       11       1234556789999998665 556655 9


Q ss_pred             CEEEEEEcCCcc-chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          376 STLQWLSVETGK-VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       376 ~~i~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +.|+.||++.-+ ++..+ .+|.-.|..+.|+|...       .+|++++.|-++||||...+.
T Consensus       213 ~~vr~wDir~~r~pl~eL-~gh~~AVRkvk~Sph~~-------~lLaSasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFEL-NGHGLAVRKVKFSPHHA-------SLLASASYDMTVRIWDPERQD  268 (311)
T ss_pred             ceEEEEehhhccccceee-cCCceEEEEEecCcchh-------hHhhhccccceEEecccccch
Confidence            999999998876 45556 79999999999999752       689999999999999998654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=9.4e-28  Score=188.42  Aligned_cols=271  Identities=17%  Similarity=0.216  Sum_probs=210.4

Q ss_pred             CCCCCCCCCCCCCCCCcccCcc-----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC
Q 013578           61 SHSKPHSHSHGDKDQNKRHHPL-----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL  135 (440)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~  135 (440)
                      ..+.-...+++..|+.+.+|..     ....++||.++|..+.|.+|++.|+++|.|++|+.||.++++     ..+...
T Consensus        55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~-----~~rk~k  129 (338)
T KOG0265|consen   55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK-----RIRKHK  129 (338)
T ss_pred             ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce-----eeehhc
Confidence            3445556788899999988873     356788999999999999999999999999999999999886     445666


Q ss_pred             CCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC
Q 013578          136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT  215 (440)
Q Consensus       136 ~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (440)
                      .|..-|.++.-..-|..++..+.+  ...+.+|+.........                        ....+......+.
T Consensus       130 ~h~~~vNs~~p~rrg~~lv~Sgsd--D~t~kl~D~R~k~~~~t------------------------~~~kyqltAv~f~  183 (338)
T KOG0265|consen  130 GHTSFVNSLDPSRRGPQLVCSGSD--DGTLKLWDIRKKEAIKT------------------------FENKYQLTAVGFK  183 (338)
T ss_pred             cccceeeecCccccCCeEEEecCC--CceEEEEeecccchhhc------------------------cccceeEEEEEec
Confidence            777888888866667777766665  46677776654321111                        1111111111223


Q ss_pred             CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578          216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      ..+. .+.+|+-|+.|++||++.++.+..+.+|...|+.+..+++|.++.+-+.|.++++||++.-..    ..+++..+
T Consensus       184 d~s~-qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p----~~R~v~if  258 (338)
T KOG0265|consen  184 DTSD-QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP----SQRCVKIF  258 (338)
T ss_pred             cccc-ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC----CCceEEEe
Confidence            3333 789999999999999999999999999999999999999999999999999999999976542    22356667


Q ss_pred             ecccc----ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          296 KGHKS----AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       296 ~~h~~----~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                      .+|..    ....++|+|+++.+..|+.|..+.+||......              ++...+|...|.+++|+|...+|.
T Consensus       259 ~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~--------------lyklpGh~gsvn~~~Fhp~e~iil  324 (338)
T KOG0265|consen  259 QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI--------------LYKLPGHYGSVNEVDFHPTEPIIL  324 (338)
T ss_pred             ecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE--------------EEEcCCcceeEEEeeecCCCcEEE
Confidence            66543    346789999999999999999999999875433              345568889999999999999888


Q ss_pred             Ee-cCCEEEEE
Q 013578          372 AT-HGSTLQWL  381 (440)
Q Consensus       372 ~~-~~~~i~i~  381 (440)
                      ++ +|.+|++=
T Consensus       325 s~~sdk~i~lg  335 (338)
T KOG0265|consen  325 SCSSDKTIYLG  335 (338)
T ss_pred             EeccCceeEee
Confidence            75 48988874

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=192.26  Aligned_cols=262  Identities=18%  Similarity=0.222  Sum_probs=197.0

Q ss_pred             EecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccc
Q 013578          132 RINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASA  211 (440)
Q Consensus       132 ~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (440)
                      ..+..|..+|.+++.+|+.+.+++++.|.   .-++|+.......                -....|...+.       +
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD---~AflW~~~~ge~~----------------~eltgHKDSVt-------~  111 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDD---LAFLWDISTGEFA----------------GELTGHKDSVT-------C  111 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCc---eEEEEEccCCcce----------------eEecCCCCceE-------E
Confidence            45667889999999999888888888773   3444544333100                01122222233       3


Q ss_pred             cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578          212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                      +.|+.+|. +|++|..+|.|+||+..++.....+......+.-+.|+|.+..|+.|+.||.+-+|.+....        .
T Consensus       112 ~~Fshdgt-lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~--------~  182 (399)
T KOG0296|consen  112 CSFSHDGT-LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA--------L  182 (399)
T ss_pred             EEEccCce-EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc--------e
Confidence            34478888 99999999999999999999888887666778889999999999999999999999997643        6


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCC----ccccccc---------------------
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK----TLKVLPI---------------------  346 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~---------------------  346 (440)
                      ...+.||..++++=.|.|+|+.++++..||+|++||..++..+.....    ....+..                     
T Consensus       183 ~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~  262 (399)
T KOG0296|consen  183 CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN  262 (399)
T ss_pred             eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence            778999999999999999999999999999999999998865432110    0000000                     


Q ss_pred             ------------cccCCCCCee---eeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCC
Q 013578          347 ------------PLLDSNGATL---QYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTI  410 (440)
Q Consensus       347 ------------~~~~~~~~~~---~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~  410 (440)
                                  .......+..   .|..+.++..-++.|+|+ ||+|.|||....++....+  |...|+.+.|-++  
T Consensus       263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--he~~V~~l~w~~t--  338 (399)
T KOG0296|consen  263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--HEDGVTKLKWLNT--  338 (399)
T ss_pred             ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--CCCceEEEEEcCc--
Confidence                        0000001111   223344555566778887 9999999999999888875  9999999999995  


Q ss_pred             CCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          411 PMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       411 ~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                             .+|++++.||.|+.||.++|+.
T Consensus       339 -------~~l~t~c~~g~v~~wDaRtG~l  360 (399)
T KOG0296|consen  339 -------DYLLTACANGKVRQWDARTGQL  360 (399)
T ss_pred             -------chheeeccCceEEeeeccccce
Confidence                   6999999999999999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=8.8e-27  Score=201.70  Aligned_cols=246  Identities=25%  Similarity=0.445  Sum_probs=192.5

Q ss_pred             CCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccccc
Q 013578          135 LPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYG  214 (440)
Q Consensus       135 ~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (440)
                      .+|..+|.+++|+|+++.+++++.+   ..+.+|+........             .   ...+...       ...+.+
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~~---g~i~i~~~~~~~~~~-------------~---~~~~~~~-------i~~~~~   59 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSGD---GTIKVWDLETGELLR-------------T---LKGHTGP-------VRDVAA   59 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeecC---cEEEEEEeeCCCcEE-------------E---EecCCcc-------eeEEEE
Confidence            3677999999999999999998865   466666554321000             0   0001111       113334


Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      .++++ .+++++.++.|++||+.+++.+..+..+...+.++.|+++++++++++.+|.|++||+...+        ....
T Consensus        60 ~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~  130 (289)
T cd00200          60 SADGT-YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK--------CLTT  130 (289)
T ss_pred             CCCCC-EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE--------EEEE
Confidence            66765 88999999999999999888888888888899999999999999888889999999987443        4566


Q ss_pred             eeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578          295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH  374 (440)
Q Consensus       295 ~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  374 (440)
                      +..|...|.+++|+|++.++++++.|+.|++||++.......              ...+...+.++.|+|+++.++++.
T Consensus       131 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--------------~~~~~~~i~~~~~~~~~~~l~~~~  196 (289)
T cd00200         131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT--------------LTGHTGEVNSVAFSPDGEKLLSSS  196 (289)
T ss_pred             eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee--------------EecCccccceEEECCCcCEEEEec
Confidence            678999999999999999888888899999999985433211              113344688999999997777655


Q ss_pred             -CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          375 -GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       375 -~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                       ++.+++||..+++.+..+ ..|...+.++.|+|++        .++++++.||.|++|++.+++
T Consensus       197 ~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~--------~~~~~~~~~~~i~i~~~~~~~  252 (289)
T cd00200         197 SDGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSPDG--------YLLASGSEDGTIRVWDLRTGE  252 (289)
T ss_pred             CCCcEEEEECCCCceecch-hhcCCceEEEEEcCCC--------cEEEEEcCCCcEEEEEcCCce
Confidence             999999999999888887 4788899999999987        788888889999999998654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-27  Score=195.99  Aligned_cols=267  Identities=17%  Similarity=0.250  Sum_probs=200.8

Q ss_pred             CCCCCCCCCCCCcccCcc-------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578           65 PHSHSHGDKDQNKRHHPL-------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP  137 (440)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~-------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~  137 (440)
                      -+..++++.|.+.-+|..       ..+++.||..+|..+.||||.++|++|+.|..+++||+.++...    .....++
T Consensus       236 GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~----~~y~~~~  311 (519)
T KOG0293|consen  236 GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR----HLYPSGL  311 (519)
T ss_pred             CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh----hhcccCc
Confidence            344566666666665533       36789999999999999999999999999999999999988642    2222335


Q ss_pred             CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578          138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD  217 (440)
Q Consensus       138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (440)
                      +..+.+++|.|||..+++++.+   ..+..|+......              ..|.....  .++       ..+...+|
T Consensus       312 ~~S~~sc~W~pDg~~~V~Gs~d---r~i~~wdlDgn~~--------------~~W~gvr~--~~v-------~dlait~D  365 (519)
T KOG0293|consen  312 GFSVSSCAWCPDGFRFVTGSPD---RTIIMWDLDGNIL--------------GNWEGVRD--PKV-------HDLAITYD  365 (519)
T ss_pred             CCCcceeEEccCCceeEecCCC---CcEEEecCCcchh--------------hccccccc--cee-------EEEEEcCC
Confidence            6889999999999999999988   6777787765431              12222111  111       12233788


Q ss_pred             CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578          218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                      |+ .+++.+.|..|++++.++......+. ...+++++++|.+++++++--.+..|++||+....        .+..+.|
T Consensus       366 gk-~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~--------lv~kY~G  435 (519)
T KOG0293|consen  366 GK-YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK--------LVRKYFG  435 (519)
T ss_pred             Cc-EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh--------HHHHhhc
Confidence            88 66666789999999998776655444 35689999999999999999999999999997544        6777888


Q ss_pred             cccc--eEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEe
Q 013578          298 HKSA--VTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAAT  373 (440)
Q Consensus       298 h~~~--v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~  373 (440)
                      |...  |..-+|-- +..++++||+|+.|+||+..++..+              ....||...|++++|+|... .+|++
T Consensus       436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll--------------~~LsGHs~~vNcVswNP~~p~m~ASa  501 (519)
T KOG0293|consen  436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL--------------AVLSGHSKTVNCVSWNPADPEMFASA  501 (519)
T ss_pred             ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee--------------EeecCCcceeeEEecCCCCHHHhhcc
Confidence            8754  33344543 4578999999999999999876543              34468888899999999877 45554


Q ss_pred             -cCCEEEEEEcCC
Q 013578          374 -HGSTLQWLSVET  385 (440)
Q Consensus       374 -~~~~i~i~d~~~  385 (440)
                       +||+|+||-...
T Consensus       502 sDDgtIRIWg~~~  514 (519)
T KOG0293|consen  502 SDDGTIRIWGPSD  514 (519)
T ss_pred             CCCCeEEEecCCc
Confidence             489999997654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.9e-26  Score=174.03  Aligned_cols=255  Identities=16%  Similarity=0.239  Sum_probs=186.4

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC----CCeEEEEeec
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN----ATSIVVATHN  159 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~----~~~l~~~~~~  159 (440)
                      .+.-+.|.+.|.|.+|||+|++|+||+.|++|++.-++.......-.-..+.-|.+.|..++|..+    +..|++++..
T Consensus        82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag  161 (350)
T KOG0641|consen   82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG  161 (350)
T ss_pred             eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence            445567999999999999999999999999999988766544322222334457799999999754    3344444333


Q ss_pred             CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578          160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG  239 (440)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  239 (440)
                        .+.|++-+..+....                ....+|...        .....+-+|- ++++|+.|.+|++||++-.
T Consensus       162 --dc~iy~tdc~~g~~~----------------~a~sghtgh--------ilalyswn~~-m~~sgsqdktirfwdlrv~  214 (350)
T KOG0641|consen  162 --DCKIYITDCGRGQGF----------------HALSGHTGH--------ILALYSWNGA-MFASGSQDKTIRFWDLRVN  214 (350)
T ss_pred             --cceEEEeecCCCCcc----------------eeecCCccc--------EEEEEEecCc-EEEccCCCceEEEEeeecc
Confidence              467777665554211                111122221        1122233444 8999999999999999988


Q ss_pred             ceeeeeeC-------CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC
Q 013578          240 KLLGNVDT-------NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE  312 (440)
Q Consensus       240 ~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  312 (440)
                      .++..+..       ....|.++++.|.|++|++|-.|....+||++.+.        .++.+..|...|.|+.|+|...
T Consensus       215 ~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r--------~iq~f~phsadir~vrfsp~a~  286 (350)
T KOG0641|consen  215 SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR--------MIQRFHPHSADIRCVRFSPGAH  286 (350)
T ss_pred             ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc--------eeeeeCCCccceeEEEeCCCce
Confidence            88877642       23568899999999999999999999999998876        7889999999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEc
Q 013578          313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSV  383 (440)
Q Consensus       313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~  383 (440)
                      ++++++.|..|++-|++..-        ..  +++......|...+..+.|.|..--+++ +.|.++.+|-+
T Consensus       287 yllt~syd~~ikltdlqgdl--------a~--el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  287 YLLTCSYDMKIKLTDLQGDL--------AH--ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             EEEEecccceEEEeecccch--------hh--cCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            99999999999999997421        11  1122233345556778999998765554 55999999965

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-28  Score=216.87  Aligned_cols=245  Identities=18%  Similarity=0.263  Sum_probs=196.8

Q ss_pred             ceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578           93 SVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE  171 (440)
Q Consensus        93 ~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~  171 (440)
                      .+..+.|.. +.++|||++..|.|.+||+......  +.+..+..|...+.++.|++....                   
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn--k~l~~f~EH~Rs~~~ldfh~tep~-------------------  147 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN--KLLTVFNEHERSANKLDFHSTEPN-------------------  147 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccc--hhhhHhhhhccceeeeeeccCCcc-------------------
Confidence            455667765 5689999999999999999863211  234566788899999999875331                   


Q ss_pred             cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc
Q 013578          172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK  251 (440)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  251 (440)
                                                                       +|++|+.||+|++||++..+...++......
T Consensus       148 -------------------------------------------------iliSGSQDg~vK~~DlR~~~S~~t~~~nSES  178 (839)
T KOG0269|consen  148 -------------------------------------------------ILISGSQDGTVKCWDLRSKKSKSTFRSNSES  178 (839)
T ss_pred             -------------------------------------------------EEEecCCCceEEEEeeecccccccccccchh
Confidence                                                             8999999999999999999888888888889


Q ss_pred             ccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q 013578          252 NNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINV  330 (440)
Q Consensus       252 v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~  330 (440)
                      |+.++|+| .+..|+++.+.|.+++||++...       ++...+.+|.++|.|+.|+|++.+|||||+|+.|+|||+.+
T Consensus       179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-------r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~  251 (839)
T KOG0269|consen  179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-------RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD  251 (839)
T ss_pred             hhceeeccCCCceEEEecCCceEEEeeccCch-------hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence            99999999 57899999999999999998765       46778899999999999999999999999999999999985


Q ss_pred             cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE-EEEe---cCCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578          331 RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI-LAAT---HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~---~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~  406 (440)
                      ....     ....        -....++.++.|-|..++ ||++   .|-.|+|||++..-........|...++.++|.
T Consensus       252 ~~~~-----~~~t--------InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~  318 (839)
T KOG0269|consen  252 SRAK-----PKHT--------INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD  318 (839)
T ss_pred             CCcc-----ceeE--------EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc
Confidence            4221     1111        112356889999999875 4544   378999999998876665556899999999997


Q ss_pred             CCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          407 PKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ...       ...|.+++.||+|..-.+
T Consensus       319 ~~d-------~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  319 SGD-------RINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             CCC-------ceeeEeecCccHHHHhhh
Confidence            732       168999999998765433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=2e-27  Score=199.29  Aligned_cols=285  Identities=14%  Similarity=0.206  Sum_probs=224.7

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe-cCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI-NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM  167 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~  167 (440)
                      .|.+-|.++.+|...+++.||+. |-|+|||+....... ..... ....+..+.++..+|||+.|++++..   ..+.+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~-PvsqLdcl~rdnyiRSckL~pdgrtLivGGea---stlsi  491 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS-PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA---STLSI  491 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC-ccccccccCcccceeeeEecCCCceEEecccc---ceeee
Confidence            68899999999999999999986 469999997653321 11111 12245789999999999999999874   67777


Q ss_pred             eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT  247 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  247 (440)
                      |+............                     ......+.....+||.+ +.++|..||.|.|||+.+...++.+++
T Consensus       492 WDLAapTprikael---------------------tssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqG  549 (705)
T KOG0639|consen  492 WDLAAPTPRIKAEL---------------------TSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQG  549 (705)
T ss_pred             eeccCCCcchhhhc---------------------CCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccC
Confidence            77655421111111                     11112234455688888 888999999999999999999999999


Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      |...+.|+.+++||..|.+|+-|.+|+.||++.+.        .+.. ....+.|.++.++|++.+|+.|-.++.+.+..
T Consensus       550 htDGascIdis~dGtklWTGGlDntvRcWDlregr--------qlqq-hdF~SQIfSLg~cP~~dWlavGMens~vevlh  620 (705)
T KOG0639|consen  550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR--------QLQQ-HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLH  620 (705)
T ss_pred             CCCCceeEEecCCCceeecCCCccceeehhhhhhh--------hhhh-hhhhhhheecccCCCccceeeecccCcEEEEe
Confidence            99999999999999999999999999999998765        2221 12457899999999999999999999998887


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~  406 (440)
                      .....               .+...-|..-|.++.|++.|+++++ |-|+.+..|.+.-|..+....  ....|.++..+
T Consensus       621 ~skp~---------------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS  683 (705)
T KOG0639|consen  621 TSKPE---------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDIS  683 (705)
T ss_pred             cCCcc---------------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--ccCcceeeeec
Confidence            76432               1233455667899999999999887 559999999999998887764  77899999999


Q ss_pred             CCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          407 PKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      .|+        ++++||+.|....||.+
T Consensus       684 ~dd--------kyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  684 FDD--------KYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCc--------eEEEecCCCcceEEEEE
Confidence            998        89999999999999875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.4e-27  Score=180.79  Aligned_cols=256  Identities=21%  Similarity=0.286  Sum_probs=200.9

Q ss_pred             cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      .-.+|.+.|..+...--|++||||+.|++|||+.+.....  .+.+....+|.++|..++|..                 
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--s~ll~~L~Gh~GPVwqv~wah-----------------   66 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--SKLLAELTGHSGPVWKVAWAH-----------------   66 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--ceeeeEecCCCCCeeEEeecc-----------------
Confidence            3457999999998888899999999999999999987654  245667789999999999963                 


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce--ee
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL--LG  243 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~  243 (440)
                                                                        |.-..+|++|+.||.|.||.-++++-  ..
T Consensus        67 --------------------------------------------------Pk~G~iLAScsYDgkVIiWke~~g~w~k~~   96 (299)
T KOG1332|consen   67 --------------------------------------------------PKFGTILASCSYDGKVIIWKEENGRWTKAY   96 (299)
T ss_pred             --------------------------------------------------cccCcEeeEeecCceEEEEecCCCchhhhh
Confidence                                                              11112899999999999999887743  44


Q ss_pred             eeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC---C-------
Q 013578          244 NVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN---S-------  311 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~-------  311 (440)
                      ....|...+++++|.|.  |-.|++++.||+|.|.+.+.....     ........|.-.|++++|.|-   |       
T Consensus        97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w-----~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~  171 (299)
T KOG1332|consen   97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW-----TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGP  171 (299)
T ss_pred             hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc-----cchhhhhccccccceeeecCcCCCccccccCc
Confidence            55678999999999885  678999999999999998765211     123445679999999999985   4       


Q ss_pred             ----CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC----CEEEEec-CCEEEEEE
Q 013578          312 ----EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG----KILAATH-GSTLQWLS  382 (440)
Q Consensus       312 ----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~-~~~i~i~d  382 (440)
                          +.|++|+.|..|+||+.....-..            .....+|...|+.++|.|.-    .+||+++ ||++.||.
T Consensus       172 ~~~~krlvSgGcDn~VkiW~~~~~~w~~------------e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  172 AAKVKRLVSGGCDNLVKIWKFDSDSWKL------------ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             ccccceeeccCCccceeeeecCCcchhh------------hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence                569999999999999998642211            12245788889999999974    3778776 99999997


Q ss_pred             cCCc--cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          383 VETG--KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       383 ~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ....  +-..++.......++.+.|+..|        ++|+.++.|+.|.+|.-+
T Consensus       240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sG--------n~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSG--------NILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ecCccCcccccccccCCcceEEEEEeccc--------cEEEEecCCcEEEEEEeC
Confidence            6522  22233333456789999999999        899999999999999754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=5.1e-27  Score=211.44  Aligned_cols=242  Identities=21%  Similarity=0.313  Sum_probs=203.8

Q ss_pred             ccccc-cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           85 NTLKG-HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        85 ~~l~~-H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      ..+.+ |...+.+..|.  +.++++++.|++|++|+..++..    +.....+|.+.|.+++|..-+             
T Consensus       201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----i~~~l~GH~g~V~~l~~~~~~-------------  261 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----ILTRLVGHFGGVWGLAFPSGG-------------  261 (537)
T ss_pred             eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceE----EEeeccCCCCCceeEEEecCC-------------
Confidence            44454 57789999997  56899999999999999987642    233377899999999986421             


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                                                                              ..+++|+.|.++++||..+|++..
T Consensus       262 --------------------------------------------------------~~lvsgS~D~t~rvWd~~sg~C~~  285 (537)
T KOG0274|consen  262 --------------------------------------------------------DKLVSGSTDKTERVWDCSTGECTH  285 (537)
T ss_pred             --------------------------------------------------------CEEEEEecCCcEEeEecCCCcEEE
Confidence                                                                    189999999999999999999999


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL  323 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i  323 (440)
                      .+.+|...+.++...  ...+++|+.|.+|++|++..+.        .+..+.+|.++|.++..+  +.++++|+.|++|
T Consensus       286 ~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~--------~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  286 SLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA--------CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV  353 (537)
T ss_pred             EecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcc--------eEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence            999999988887654  5578889999999999998665        788888899999999996  8899999999999


Q ss_pred             EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc-cchhhhhccccCCeE
Q 013578          324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG-KVLDTAEKAHEGEIT  401 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~-~~~~~~~~~h~~~v~  401 (440)
                      ++||+.+.+++              ....+|...|.++.+... ..+..|+ |+.|++||+.+. +++..+ .+|.+-|.
T Consensus       354 ~VW~~~~~~cl--------------~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl-~~h~~~v~  417 (537)
T KOG0274|consen  354 KVWDPRTGKCL--------------KSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL-QGHTSLVS  417 (537)
T ss_pred             EEEEhhhceee--------------eeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh-cCCccccc
Confidence            99999977654              334568888999988777 6666665 999999999999 899998 58999887


Q ss_pred             EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      ++.+..          .+|++++.|++|++||...+++
T Consensus       418 ~l~~~~----------~~Lvs~~aD~~Ik~WD~~~~~~  445 (537)
T KOG0274|consen  418 SLLLRD----------NFLVSSSADGTIKLWDAEEGEC  445 (537)
T ss_pred             cccccc----------ceeEeccccccEEEeecccCce
Confidence            777765          4899999999999999998875

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=5.5e-26  Score=205.50  Aligned_cols=230  Identities=12%  Similarity=0.111  Sum_probs=164.5

Q ss_pred             eeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCC
Q 013578          109 ACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGP  188 (440)
Q Consensus       109 ~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (440)
                      |+.++.|++|+.....     ......+|.+.|.+++|+|+..                                     
T Consensus        50 GG~~gvI~L~~~~r~~-----~v~~L~gH~~~V~~lafsP~~~-------------------------------------   87 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP-----PVIKLKGHTSSILDLQFNPCFS-------------------------------------   87 (568)
T ss_pred             CCceeEEEeeecCCCc-----eEEEEcCCCCCEEEEEEcCCCC-------------------------------------
Confidence            6778999999876532     3445668889999999998621                                     


Q ss_pred             ceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--------eeeeeeCCCCcccEEEecCC
Q 013578          189 EIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--------LLGNVDTNQLKNNMAAISPN  260 (440)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~s~~  260 (440)
                                                    . +|++|+.|++|++||+.++.        ++..+.+|...|.+++|+|+
T Consensus        88 ------------------------------~-lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~  136 (568)
T PTZ00420         88 ------------------------------E-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM  136 (568)
T ss_pred             ------------------------------C-EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC
Confidence                                          1 78899999999999997642        33467788999999999999


Q ss_pred             CCe-EEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578          261 GRF-LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK  339 (440)
Q Consensus       261 ~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  339 (440)
                      +.. |++++.|+.|++||++.+.        ....+. |...|.+++|+|+|.+|++++.|+.|+|||++++..+..   
T Consensus       137 g~~iLaSgS~DgtIrIWDl~tg~--------~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t---  204 (568)
T PTZ00420        137 NYYIMCSSGFDSFVNIWDIENEK--------RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS---  204 (568)
T ss_pred             CCeEEEEEeCCCeEEEEECCCCc--------EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE---
Confidence            875 5788999999999997654        333443 567899999999999999999999999999997654321   


Q ss_pred             ccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecC----CEEEEEEcCC-ccchhhhh-ccccCCeEEEEecCCCCCC
Q 013578          340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THG----STLQWLSVET-GKVLDTAE-KAHEGEITCMAWAPKTIPM  412 (440)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~----~~i~i~d~~~-~~~~~~~~-~~h~~~v~~v~~~~~~~~~  412 (440)
                          +  ..+........+....|++++.+|++ |.+    +.|++||++. ++++..+. ..+.+.+......+++   
T Consensus       205 ----l--~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg---  275 (568)
T PTZ00420        205 ----F--HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG---  275 (568)
T ss_pred             ----E--ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC---
Confidence                1  01111111122334456789888776 444    3799999985 45554432 1122233333334445   


Q ss_pred             CCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          413 GNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       413 ~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                           .++++|+.|++|++|++..+
T Consensus       276 -----~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        276 -----LIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             -----CEEEEEECCCeEEEEEccCC
Confidence                 78999999999999999765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.4e-26  Score=202.34  Aligned_cols=203  Identities=19%  Similarity=0.317  Sum_probs=154.6

Q ss_pred             EEEEeeCCceEEEEeCCCCc---eeee----------e------------------------eCCCCcccEEEecCCCCe
Q 013578          221 IIASCSEGTDISIWHGKTGK---LLGN----------V------------------------DTNQLKNNMAAISPNGRF  263 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~---~~~~----------~------------------------~~~~~~v~~~~~s~~~~~  263 (440)
                      .+++|+.|++|++||+..+.   ..+.          .                        -.....+++++++|+|++
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            59999999999999987521   1100          0                        011235789999999999


Q ss_pred             EEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC---CCCEEEEEeCCCcEEEEecCccccccCCCCc
Q 013578          264 LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKT  340 (440)
Q Consensus       264 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  340 (440)
                      ||+|..-|+++||++....        ....+.+|...|.|+.|+-   ..++||+++.|..|.+||+.....+.+....
T Consensus       474 LAsGDr~GnlrVy~Lq~l~--------~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~  545 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELE--------YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG  545 (1080)
T ss_pred             ecccCccCceEEEEehhhh--------hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc
Confidence            9999999999999996544        6677889999999999986   3467999999999999998755443221100


Q ss_pred             ----------------cccc--------------------cccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEc
Q 013578          341 ----------------LKVL--------------------PIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSV  383 (440)
Q Consensus       341 ----------------~~~~--------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~  383 (440)
                                      .+.+                    ..+..........+..|+..|..++++++ .|..|+||++
T Consensus       546 HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i  625 (1080)
T KOG1408|consen  546 HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDI  625 (1080)
T ss_pred             cccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEec
Confidence                            0000                    01111122233457789999999988875 5999999999


Q ss_pred             CCccchhhhh--ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          384 ETGKVLDTAE--KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       384 ~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      ++|+....++  .+|++....+...|.+        -||+|...|.++.++|+-++||
T Consensus       626 ~sgKq~k~FKgs~~~eG~lIKv~lDPSg--------iY~atScsdktl~~~Df~sgEc  675 (1080)
T KOG1408|consen  626 ESGKQVKSFKGSRDHEGDLIKVILDPSG--------IYLATSCSDKTLCFVDFVSGEC  675 (1080)
T ss_pred             cccceeeeecccccCCCceEEEEECCCc--------cEEEEeecCCceEEEEeccchh
Confidence            9999988885  3466789999999998        8999999999999999999987

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=8.9e-26  Score=179.02  Aligned_cols=249  Identities=16%  Similarity=0.250  Sum_probs=182.3

Q ss_pred             CCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccccc
Q 013578          135 LPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYG  214 (440)
Q Consensus       135 ~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (440)
                      ....+.|.++.|+++|..+++++.+   ..+.+++.........                       +....++.....+
T Consensus        11 ~~~~~~i~sl~fs~~G~~litss~d---Dsl~LYd~~~g~~~~t-----------------------i~skkyG~~~~~F   64 (311)
T KOG1446|consen   11 RETNGKINSLDFSDDGLLLITSSED---DSLRLYDSLSGKQVKT-----------------------INSKKYGVDLACF   64 (311)
T ss_pred             ccCCCceeEEEecCCCCEEEEecCC---CeEEEEEcCCCceeeE-----------------------eecccccccEEEE
Confidence            3356889999999999999998776   3566666554421111                       1111122222222


Q ss_pred             CCCCCeEEEEee--CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578          215 TADGSTIIASCS--EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       215 ~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                      ..... .++.++  .|.+|+..++.+.+.++.+.+|...|..++.+|-+..+++++.|++|++||++..+        +.
T Consensus        65 th~~~-~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~--------cq  135 (311)
T KOG1446|consen   65 THHSN-TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK--------CQ  135 (311)
T ss_pred             ecCCc-eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC--------Cc
Confidence            33333 333333  48899999999999999999999999999999999999999999999999998654        33


Q ss_pred             eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                      ..+.  ...-..++|+|+|-++|++.....|++||++.-..     .....+.+.    .+...+++.+.|||||++|+.
T Consensus       136 g~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk-----gPF~tf~i~----~~~~~ew~~l~FS~dGK~iLl  204 (311)
T KOG1446|consen  136 GLLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK-----GPFTTFSIT----DNDEAEWTDLEFSPDGKSILL  204 (311)
T ss_pred             eEEe--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCC-----CCceeEccC----CCCccceeeeEEcCCCCEEEE
Confidence            3332  22334578999999999999888999999985421     222222111    144566889999999998877


Q ss_pred             ec-CCEEEEEEcCCccchhhhhccccCC---eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          373 TH-GSTLQWLSVETGKVLDTAEKAHEGE---ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       373 ~~-~~~i~i~d~~~~~~~~~~~~~h~~~---v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +. .+.+++.|.-+|..+..+. .+...   -....|.||+        .++++|+.||+|.+|++++++
T Consensus       205 sT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ftPds--------~Fvl~gs~dg~i~vw~~~tg~  265 (311)
T KOG1446|consen  205 STNASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSATFTPDS--------KFVLSGSDDGTIHVWNLETGK  265 (311)
T ss_pred             EeCCCcEEEEEccCCcEeeeEe-eccCCCCcceeEEECCCC--------cEEEEecCCCcEEEEEcCCCc
Confidence            65 7889999999999887773 44432   2677899999        899999999999999998875

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=5.8e-26  Score=178.59  Aligned_cols=273  Identities=12%  Similarity=0.187  Sum_probs=194.2

Q ss_pred             ccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578           89 GHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM  167 (440)
Q Consensus        89 ~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~  167 (440)
                      .-.+.|.+|+||| ...+++.||.||+||+|+++.....   ..+....|.++|.+++|+.+|..+++++.|   ..+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~---~~ka~~~~~~PvL~v~WsddgskVf~g~~D---k~~k~   98 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL---VPKAQQSHDGPVLDVCWSDDGSKVFSGGCD---KQAKL   98 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcc---cchhhhccCCCeEEEEEccCCceEEeeccC---CceEE
Confidence            4578899999999 5667779999999999999874221   224556788999999999999999999888   45666


Q ss_pred             eccccccccccccccCCCCCCceeecccccccceeEEEeecc-cc-cccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGA-SA-TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV  245 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  245 (440)
                      |+.......                         .+..+.++ .. .++.+.....|++|+.|++|+.||.+...++.++
T Consensus        99 wDL~S~Q~~-------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~  153 (347)
T KOG0647|consen   99 WDLASGQVS-------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL  153 (347)
T ss_pred             EEccCCCee-------------------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence            665443110                         01111110 00 1112222338999999999999999999988888


Q ss_pred             eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578          246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV  325 (440)
Q Consensus       246 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i  325 (440)
                      ...+   ++-+.+-...+++++..+..|.+|+++.+...    ....  .....-.+.|++..++....+.|+.+|.+.|
T Consensus       154 ~LPe---RvYa~Dv~~pm~vVata~r~i~vynL~n~~te----~k~~--~SpLk~Q~R~va~f~d~~~~alGsiEGrv~i  224 (347)
T KOG0647|consen  154 QLPE---RVYAADVLYPMAVVATAERHIAVYNLENPPTE----FKRI--ESPLKWQTRCVACFQDKDGFALGSIEGRVAI  224 (347)
T ss_pred             eccc---eeeehhccCceeEEEecCCcEEEEEcCCCcch----hhhh--cCcccceeeEEEEEecCCceEeeeecceEEE
Confidence            7643   33344445668899999999999999655411    1011  1112345789999999988899999999999


Q ss_pred             EecCccccccCCCCccccccccccC----CCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcCCccchhhhhccccCCe
Q 013578          326 WNINVRYHLDEDPKTLKVLPIPLLD----SNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGKVLDTAEKAHEGEI  400 (440)
Q Consensus       326 wd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~~~~~~~~~h~~~v  400 (440)
                      ..+..+..       ...+.+..+.    ..+....|+.++|+|.-..|++ |+||.+.+||-.....+... ..|..+|
T Consensus       225 q~id~~~~-------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s-~~~~qpI  296 (347)
T KOG0647|consen  225 QYIDDPNP-------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS-ETHPQPI  296 (347)
T ss_pred             EecCCCCc-------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc-CcCCCcc
Confidence            99986432       1112222222    2224677999999998666665 78999999999888888877 4799999


Q ss_pred             EEEEecCCC
Q 013578          401 TCMAWAPKT  409 (440)
Q Consensus       401 ~~v~~~~~~  409 (440)
                      ++.+|+.+|
T Consensus       297 tcc~fn~~G  305 (347)
T KOG0647|consen  297 TCCSFNRNG  305 (347)
T ss_pred             ceeEecCCC
Confidence            999999998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=3.6e-26  Score=179.22  Aligned_cols=308  Identities=16%  Similarity=0.253  Sum_probs=215.8

Q ss_pred             ccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCc--c-----ee---eEEecCCCCCCCceEEEccCCCeE-E
Q 013578           87 LKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSK--S-----FK---FLRINLPPGGPPTAVAFADNATSI-V  154 (440)
Q Consensus        87 l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~--~-----~~---~~~~~~~~~~~v~~v~~~~~~~~l-~  154 (440)
                      ..-|.+.|+++...+ .|+|+++|+.||.|.|||++.....  .     ..   .......|.-.|.++.|.|-..-+ .
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            346899999999998 7899999999999999999865411  0     01   112334566789999999965544 4


Q ss_pred             EEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEE
Q 013578          155 VATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIW  234 (440)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vw  234 (440)
                      +++.|   ..+.+|+.+.......++....      .+...           .     ........++++|..+-.|++-
T Consensus       119 ssSFD---htlKVWDtnTlQ~a~~F~me~~------VYsha-----------m-----Sp~a~sHcLiA~gtr~~~VrLC  173 (397)
T KOG4283|consen  119 SSSFD---HTLKVWDTNTLQEAVDFKMEGK------VYSHA-----------M-----SPMAMSHCLIAAGTRDVQVRLC  173 (397)
T ss_pred             ccccc---ceEEEeecccceeeEEeecCce------eehhh-----------c-----ChhhhcceEEEEecCCCcEEEE
Confidence            44555   7788888776532222221111      11100           0     0011122378899999999999


Q ss_pred             eCCCCceeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCC-------ceeeeeeeeeeeccccceEEEE
Q 013578          235 HGKTGKLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDG-------LVKAVTSVMQLKGHKSAVTWLC  306 (440)
Q Consensus       235 d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~~h~~~v~~~~  306 (440)
                      |+.+|...+.+.+|...|.++.|+|... .|++|+.||.|++||++.....       +.+....+..-..|.+.|.+++
T Consensus       174 Di~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla  253 (397)
T KOG4283|consen  174 DIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA  253 (397)
T ss_pred             eccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence            9999999999999999999999999765 5788999999999999765210       1111222334557899999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCc
Q 013578          307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETG  386 (440)
Q Consensus       307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~  386 (440)
                      |+.++.++++++.|..+++|+...+..-......      .......+ ..+. +.-...+.++..-.++.+.++++-+|
T Consensus       254 ~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~------~~~n~~~~-~~~~-~~~~~s~vfv~~p~~~~lall~~~sg  325 (397)
T KOG4283|consen  254 WTSDARYLASCGTDDRIRVWNMESGRNTLREFGP------IIHNQTTS-FAVH-IQSMDSDVFVLFPNDGSLALLNLLEG  325 (397)
T ss_pred             ecccchhhhhccCccceEEeecccCccccccccc------cccccccc-ceEE-EeecccceEEEEecCCeEEEEEccCc
Confidence            9999999999999999999999877542111100      01111111 1111 22112233444455799999999999


Q ss_pred             cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          387 KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       387 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ..+..+ ..|...|.|..+-|+-        ..+.+|..|+.|..|-..-
T Consensus       326 s~ir~l-~~h~k~i~c~~~~~~f--------q~~~tg~~d~ni~~w~p~l  366 (397)
T KOG4283|consen  326 SFVRRL-STHLKRINCAAYRPDF--------EQCFTGDMNGNIYMWSPAL  366 (397)
T ss_pred             eEEEee-ecccceeeEEeecCch--------hhhhccccCCccccccccc
Confidence            999888 5899999999999997        7899999999999998743

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=3.9e-27  Score=195.27  Aligned_cols=225  Identities=19%  Similarity=0.273  Sum_probs=180.7

Q ss_pred             ccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           85 NTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      .+|.||++.=++|+|++. .-+|++|+.|++|++||+......  .......+.+|...|..++|++-...         
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~---------  241 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED---------  241 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh---------
Confidence            378999998899999984 458999999999999999876542  23344566788888999999875321         


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC--CC
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK--TG  239 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~  239 (440)
                                                                                 ++.+++.|+.+.|||.+  +.
T Consensus       242 -----------------------------------------------------------lF~sv~dd~~L~iwD~R~~~~  262 (422)
T KOG0264|consen  242 -----------------------------------------------------------LFGSVGDDGKLMIWDTRSNTS  262 (422)
T ss_pred             -----------------------------------------------------------hheeecCCCeEEEEEcCCCCC
Confidence                                                                       78899999999999999  55


Q ss_pred             ceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC-CEEEEE
Q 013578          240 KLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQIITA  317 (440)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~  317 (440)
                      ++......|...+.|++|+| ++..||+|+.|++|.+||+|...       .+++.+.+|...|.++.|+|.. ..||++
T Consensus       263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-------~~lh~~e~H~dev~~V~WSPh~etvLASS  335 (422)
T KOG0264|consen  263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-------KPLHTFEGHEDEVFQVEWSPHNETVLASS  335 (422)
T ss_pred             CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------cCceeccCCCcceEEEEeCCCCCceeEec
Confidence            66677788999999999999 56788999999999999998776       3788999999999999999954 578999


Q ss_pred             eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEcC
Q 013578          318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVE  384 (440)
Q Consensus       318 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~~  384 (440)
                      +.|+.+.+||+..-...+........-+-.++...||...|..++|+|+..+++++  .|+.+.||...
T Consensus       336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            99999999999854332211111112223456778999999999999999977763  48999999875

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.5e-27  Score=204.65  Aligned_cols=194  Identities=17%  Similarity=0.272  Sum_probs=164.4

Q ss_pred             EEEEeeCCceEEEEeCCCC--ceeeeeeCCCCcccEEEe-cCCCCeEEEEecCCCEEEEEeEecCCCcee--eeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTG--KLLGNVDTNQLKNNMAAI-SPNGRFLAAAAFTADVKVWEIVYSKDGLVK--AVTSVMQL  295 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~  295 (440)
                      .|++++.|.+|++|+...+  -++..+..|...|.|+++ .++...+|+|+-|+.|.+||+..+......  .......+
T Consensus        87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl  166 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL  166 (735)
T ss_pred             ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence            6899999999999999877  577888999999999999 888999999999999999999876321110  11122233


Q ss_pred             e-ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-
Q 013578          296 K-GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-  373 (440)
Q Consensus       296 ~-~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-  373 (440)
                      . |+..+|.+++..+.|..|++|+..+.+++||.+++..+              ....+|...|..+..++||+.++++ 
T Consensus       167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki--------------mkLrGHTdNVr~ll~~dDGt~~ls~s  232 (735)
T KOG0308|consen  167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI--------------MKLRGHTDNVRVLLVNDDGTRLLSAS  232 (735)
T ss_pred             CCCCccceeeeecCCcceEEEecCcccceEEeccccccce--------------eeeeccccceEEEEEcCCCCeEeecC
Confidence            3 88999999999999999999999999999999976543              2234778889999999999987775 


Q ss_pred             cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          374 HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       374 ~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +||+|++||+...+++.++ ..|...|+++..+|+-        ..+.+|+.||.|..=++.+.
T Consensus       233 SDgtIrlWdLgqQrCl~T~-~vH~e~VWaL~~~~sf--------~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  233 SDGTIRLWDLGQQRCLATY-IVHKEGVWALQSSPSF--------THVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             CCceEEeeeccccceeeeE-EeccCceEEEeeCCCc--------ceEEecCCCCcEEecccCCc
Confidence            5999999999999999998 5899999999999997        89999999999999888874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.9e-27  Score=181.99  Aligned_cols=251  Identities=17%  Similarity=0.258  Sum_probs=194.8

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      -+.+|.||.++|+...++.+..+.|+++.|-+-+|||.-++..      .....|..-|.+++|+.|.++|++++.+   
T Consensus        51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde------lhsf~hkhivk~~af~~ds~~lltgg~e---  121 (334)
T KOG0278|consen   51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE------LHSFEHKHIVKAVAFSQDSNYLLTGGQE---  121 (334)
T ss_pred             cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh------hhhhhhhheeeeEEecccchhhhccchH---
Confidence            4789999999999999999989999999999999999887753      2345677889999999999999999876   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ..+++++.++...            +...+..+....+..+.          ....+ .+++.++|++||+||.+++..+
T Consensus       122 kllrvfdln~p~A------------pp~E~~ghtg~Ir~v~w----------c~eD~-~iLSSadd~tVRLWD~rTgt~v  178 (334)
T KOG0278|consen  122 KLLRVFDLNRPKA------------PPKEISGHTGGIRTVLW----------CHEDK-CILSSADDKTVRLWDHRTGTEV  178 (334)
T ss_pred             HHhhhhhccCCCC------------CchhhcCCCCcceeEEE----------eccCc-eEEeeccCCceEEEEeccCcEE
Confidence            5666666655421            11111222221111111          22333 6777799999999999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~  322 (440)
                      +++.. ..+|+++.++++|++|.++ ..+.|.+||...-.        .+..++ -...|.+..++|+...+++|+.|..
T Consensus       179 ~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~--------~lKs~k-~P~nV~SASL~P~k~~fVaGged~~  247 (334)
T KOG0278|consen  179 QSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG--------LLKSYK-MPCNVESASLHPKKEFFVAGGEDFK  247 (334)
T ss_pred             EEEec-CCCCcceeeccCCCEEEEe-cCceeEEecccccc--------ceeecc-CccccccccccCCCceEEecCcceE
Confidence            99976 5679999999999988776 46789999986543        444443 3456889999999999999999999


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccch
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVL  389 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~  389 (440)
                      ++.||..++..+..             ...+|..+|.++.|+|+|...|+|+ ||+|++|-+..++..
T Consensus       248 ~~kfDy~TgeEi~~-------------~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  248 VYKFDYNTGEEIGS-------------YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             EEEEeccCCceeee-------------cccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            99999998865421             1457788899999999999999987 999999998776644

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.7e-26  Score=178.36  Aligned_cols=258  Identities=20%  Similarity=0.320  Sum_probs=188.1

Q ss_pred             cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578           88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM  167 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~  167 (440)
                      .+|.+-|+|+.|.+-|+++|||+.|++|+|||..... ..+.+...-..|++.|..+.|.+-.                 
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-~~W~~Ts~Wrah~~Si~rV~WAhPE-----------------   71 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-GTWSCTSSWRAHDGSIWRVVWAHPE-----------------   71 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-CceEEeeeEEecCCcEEEEEecCcc-----------------
Confidence            4799999999999999999999999999999985543 3355555556677788887775421                 


Q ss_pred             eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC---------
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT---------  238 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~---------  238 (440)
                                                                       -|+ .+++|+.|+++.||.-..         
T Consensus        72 -------------------------------------------------fGq-vvA~cS~Drtv~iWEE~~~~~~~~~~~  101 (361)
T KOG2445|consen   72 -------------------------------------------------FGQ-VVATCSYDRTVSIWEEQEKSEEAHGRR  101 (361)
T ss_pred             -------------------------------------------------ccc-eEEEEecCCceeeeeecccccccccce
Confidence                                                             133 899999999999997521         


Q ss_pred             CceeeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-------ccccceEEEEEcC
Q 013578          239 GKLLGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-------GHKSAVTWLCFAP  309 (440)
Q Consensus       239 ~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~p  309 (440)
                      .....++......|+.+.|.|.  |-.||+++.||.++||+.....  ....+.....++       .+..+-.|+.|+|
T Consensus       102 Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~  179 (361)
T KOG2445|consen  102 WVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP  179 (361)
T ss_pred             eEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--ccccchhhhhhhhccCCcccccCcceEEeecc
Confidence            1223455666788999999994  7789999999999999964322  112233333333       4667889999998


Q ss_pred             C---CCEEEEEeCC-----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-CC---EEEEec-CC
Q 013578          310 N---SEQIITASKD-----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-GK---ILAATH-GS  376 (440)
Q Consensus       310 ~---~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~---~l~~~~-~~  376 (440)
                      .   ..+||.|+.+     +.++||.......     +..+     .....++..+|+.++|.|+ |+   +||++. ||
T Consensus       180 sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-----Kw~k-----va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  180 SRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-----KWLK-----VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             ccccCceEEEEcccCCccccceEEEEecCCcc-----eeee-----ehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            4   3567887765     4789998764321     1111     1223377788999999997 43   677766 66


Q ss_pred             EEEEEEcCCcc--------------------chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          377 TLQWLSVETGK--------------------VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       377 ~i~i~d~~~~~--------------------~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                       |+||.+....                    .+..+ ..|.+.|+.+.|+-.|        ..|++.|.||.||+|...
T Consensus       250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv~wNmtG--------tiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRVRWNMTG--------TILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             -EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEEEEeeee--------eEEeecCCCceeeehhhh
Confidence             9999987321                    12223 5799999999999998        899999999999999753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.2e-26  Score=201.90  Aligned_cols=243  Identities=19%  Similarity=0.329  Sum_probs=195.2

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce-EEEccCCCeEEEEeecCC
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA-VAFADNATSIVVATHNLS  161 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~~~~~~l~~~~~~~~  161 (440)
                      .-+.+.||...|..+++.+ +..++++|+||++++|+-...+-.   ......++.+-+.. ++|.+             
T Consensus         6 ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l---~~~~~~~~~g~i~~~i~y~e-------------   68 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYL---ETHAFEGPKGFIANSICYAE-------------   68 (745)
T ss_pred             eEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccc---cceecccCcceeeccceecc-------------
Confidence            3467899999999999875 458999999999999987544321   11111222222211 22221             


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                                                                             ..+..+++|++|..|.+|...+..+
T Consensus        69 -------------------------------------------------------~~~~~l~~g~~D~~i~v~~~~~~~P   93 (745)
T KOG0301|consen   69 -------------------------------------------------------SDKGRLVVGGMDTTIIVFKLSQAEP   93 (745)
T ss_pred             -------------------------------------------------------ccCcceEeecccceEEEEecCCCCc
Confidence                                                                   1111689999999999999999999


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      +..+.+|+..|.|+....++. +++|+.|.++++|....          +...+.+|+..|+++.+-|++ .++|||.|.
T Consensus        94 ~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~----------l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK  161 (745)
T KOG0301|consen   94 LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE----------LVYSLQGHTASVWAVASLPEN-TYVTGSADK  161 (745)
T ss_pred             hhhhhccccceeeeecCCcCc-eEecccccceEEecchh----------hhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence            999999999999999888887 99999999999998643          456699999999999999988 789999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeE
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEIT  401 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~  401 (440)
                      +|++|.-.+.                .....+|..-|+.+++-+++.++.++.||.|++|++ +|+.+.+. .+|..-|.
T Consensus       162 tIklWk~~~~----------------l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~-~ghtn~vY  223 (745)
T KOG0301|consen  162 TIKLWKGGTL----------------LKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEM-HGHTNFVY  223 (745)
T ss_pred             eeeeccCCch----------------hhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeee-eccceEEE
Confidence            9999986421                233457888899999999999999999999999999 78888887 59999999


Q ss_pred             EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ++....++        ..++++|+|++++||+..
T Consensus       224 sis~~~~~--------~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  224 SISMALSD--------GLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             EEEecCCC--------CeEEEecCCceEEEeecC
Confidence            99955554        699999999999999876

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=6.1e-26  Score=195.73  Aligned_cols=287  Identities=16%  Similarity=0.213  Sum_probs=204.1

Q ss_pred             CCCCCCCCCCCCCcccCccc----------cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe
Q 013578           64 KPHSHSHGDKDQNKRHHPLD----------VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI  133 (440)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~----------~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~  133 (440)
                      ..+..+-++.++.+.+.+..          ++....|.+.|..+.|.|....|++++.|.++++||+.+....   -...
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~---G~~~  139 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV---GGRL  139 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee---ccee
Confidence            44555666666666555432          3445589999999999997779999999999999999987543   2235


Q ss_pred             cCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccc
Q 013578          134 NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY  213 (440)
Q Consensus       134 ~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (440)
                      ..+|.+.|.+++|.+....                                                             
T Consensus       140 ~~GH~~SvkS~cf~~~n~~-------------------------------------------------------------  158 (720)
T KOG0321|consen  140 NLGHTGSVKSECFMPTNPA-------------------------------------------------------------  158 (720)
T ss_pred             ecccccccchhhhccCCCc-------------------------------------------------------------
Confidence            7789999999999887542                                                             


Q ss_pred             cCCCCCeEEEEeeCCceEEEEeCCCCc---------------------------eeeeeeCCCCcccE---EEecCCCCe
Q 013578          214 GTADGSTIIASCSEGTDISIWHGKTGK---------------------------LLGNVDTNQLKNNM---AAISPNGRF  263 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~---------------------------~~~~~~~~~~~v~~---~~~s~~~~~  263 (440)
                             .|++|+.||.|.|||++-..                           .+.....+...+..   +.+..|...
T Consensus       159 -------vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t  231 (720)
T KOG0321|consen  159 -------VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST  231 (720)
T ss_pred             -------ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence                   67777888888888765321                           01111122333433   556678888


Q ss_pred             EEEEec-CCCEEEEEeEecCCCceeeeeeeeeeecc---ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578          264 LAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGH---KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK  339 (440)
Q Consensus       264 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  339 (440)
                      ||+++. |+.|+|||++...............+..|   .-.++++.....|.+|+..+.|+.|.+|++.....-     
T Consensus       232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s-----  306 (720)
T KOG0321|consen  232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS-----  306 (720)
T ss_pred             eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC-----
Confidence            998887 99999999987653332222233333334   345788888888899888888999999999854221     


Q ss_pred             ccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce
Q 013578          340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS  418 (440)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~  418 (440)
                           +...+...........-..+||+.++++|+ |...++|.+.+.+.-..+..+|.-.|++++|.|...       .
T Consensus       307 -----P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~-------t  374 (720)
T KOG0321|consen  307 -----PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT-------T  374 (720)
T ss_pred             -----chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC-------C
Confidence                 111111111122233456789999999986 999999999998877666689999999999998641       4


Q ss_pred             EEEEeeCCCeEEEEeCCCCC
Q 013578          419 VLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       419 ~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      -++|+++|.+++||++.++-
T Consensus       375 ~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  375 PVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             CceeeccCcceEEEeccCch
Confidence            68888999999999997653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=1e-26  Score=194.03  Aligned_cols=252  Identities=16%  Similarity=0.244  Sum_probs=194.4

Q ss_pred             eeEEecCCCCCCCceEEEcc-CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEee
Q 013578          129 KFLRINLPPGGPPTAVAFAD-NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLF  207 (440)
Q Consensus       129 ~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (440)
                      +......+|...|.++.|.| .+..|++++.|+.+..+.+|+....+....+                  |.       .
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g------------------H~-------k  259 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG------------------HR-------K  259 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc------------------ch-------h
Confidence            34566778999999999999 7777788887755444455553333222111                  11       1


Q ss_pred             cccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCce
Q 013578          208 GASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLV  286 (440)
Q Consensus       208 ~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~  286 (440)
                      ....+.++.+|. .+++++.|+.|++||.++|+++..+.. ...+.|+.|+|++ +.|++|+.|+.|+.||++.++    
T Consensus       260 ~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k----  333 (503)
T KOG0282|consen  260 PVRDASFNNCGT-SFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK----  333 (503)
T ss_pred             hhhhhhccccCC-eeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH----
Confidence            223344567777 899999999999999999999999876 4568999999998 899999999999999999887    


Q ss_pred             eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC
Q 013578          287 KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD  366 (440)
Q Consensus       287 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  366 (440)
                          .++.+..|-+.|..+.|-++|+++++.+.|++++||+.+....+....             ........++..+|+
T Consensus       334 ----vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~-------------~~~~hsmP~~~~~P~  396 (503)
T KOG0282|consen  334 ----VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIA-------------DPEMHTMPCLTLHPN  396 (503)
T ss_pred             ----HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhc-------------chhhccCcceecCCC
Confidence                777888899999999999999999999999999999998654332111             111223457999999


Q ss_pred             CCEEEE-ecCCEEEEEEcCCccc---hhhhhcccc--CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          367 GKILAA-THGSTLQWLSVETGKV---LDTAEKAHE--GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       367 g~~l~~-~~~~~i~i~d~~~~~~---~~~~~~~h~--~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +.++++ +-|+.|.+|.+...-.   ...+ .+|.  +--..+.|+|||        ++|++|+.||.+.+||..+.
T Consensus       397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f-eGh~vaGys~~v~fSpDG--------~~l~SGdsdG~v~~wdwkt~  464 (503)
T KOG0282|consen  397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRF-EGHSVAGYSCQVDFSPDG--------RTLCSGDSDGKVNFWDWKTT  464 (503)
T ss_pred             CCeehhhccCceEEEEecccccccCHhhhh-cceeccCceeeEEEcCCC--------CeEEeecCCccEEEeechhh
Confidence            999998 4599999998754322   2233 4775  456778999999        99999999999999998764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.9e-26  Score=190.27  Aligned_cols=249  Identities=19%  Similarity=0.332  Sum_probs=196.7

Q ss_pred             cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578           88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM  167 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~  167 (440)
                      ++|...|.+++.|+||+|||||+.|..|.||+.++.+.     ...+.+|.+.|.+++|-...                 
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh-----v~~~~ghr~~V~~L~fr~gt-----------------  256 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH-----VKVFKGHRGAVSSLAFRKGT-----------------  256 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccch-----hhcccccccceeeeeeecCc-----------------
Confidence            59999999999999999999999999999999998763     34466788888888885321                 


Q ss_pred             eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT  247 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  247 (440)
                                                                          ..+++++.|+.|++|++.....+.++.+
T Consensus       257 ----------------------------------------------------~~lys~s~Drsvkvw~~~~~s~vetlyG  284 (479)
T KOG0299|consen  257 ----------------------------------------------------SELYSASADRSVKVWSIDQLSYVETLYG  284 (479)
T ss_pred             ----------------------------------------------------cceeeeecCCceEEEehhHhHHHHHHhC
Confidence                                                                1688999999999999999999999999


Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      |+..|..+.....++.+-+|+.|+++++|++...         ....+.+|.+.+-|++|-. ...|++|+.||.|.+|+
T Consensus       285 Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee---------sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  285 HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE---------SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWS  354 (479)
T ss_pred             CccceeeechhcccceEEeccccceeEEEecccc---------ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEee
Confidence            9999999988888899989999999999999433         3456788999999999974 56799999999999999


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc----cchhhhhccccCCeEE
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG----KVLDTAEKAHEGEITC  402 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~----~~~~~~~~~h~~~v~~  402 (440)
                      +.+.+.+..........+  ......+..+|++++..|...++|+|+ +|.|++|-+.++    .++..+.  -.+-|++
T Consensus       355 ~~KKkplf~~~~AHgv~~--~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNs  430 (479)
T KOG0299|consen  355 LLKKKPLFTSRLAHGVIP--ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVNS  430 (479)
T ss_pred             ecccCceeEeeccccccC--CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEEE
Confidence            987765533222211111  112223336899999999999999988 899999999888    3444442  5678999


Q ss_pred             EEecCCCCCCCCCcce-EEEEeeCCCeEEEE
Q 013578          403 MAWAPKTIPMGNQQVS-VLATSSVDKKVKLW  432 (440)
Q Consensus       403 v~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw  432 (440)
                      ++|++++        . +++..+....+--|
T Consensus       431 l~f~~sg--------k~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  431 LAFSNSG--------KRIVAGIGKEHRLGRW  453 (479)
T ss_pred             EEEccCC--------CEEEEeccccccccee
Confidence            9999998        5 45544555444333

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=2.5e-26  Score=199.93  Aligned_cols=313  Identities=22%  Similarity=0.314  Sum_probs=223.8

Q ss_pred             ccccccccCcceeEEEEccCCC---EEEEeeCCCcEEEEecCCCCCc----------------ceeeE----------Ee
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGK---CLATACADGVIRVHKLDDASSK----------------SFKFL----------RI  133 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~---~l~t~s~dg~v~vW~~~~~~~~----------------~~~~~----------~~  133 (440)
                      .+..+.||++.|.+++|...+.   +|||+|.|..||||.+.-....                .+...          ..
T Consensus       183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal  262 (764)
T KOG1063|consen  183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL  262 (764)
T ss_pred             EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence            4678999999999999987544   8999999999999997543210                01111          12


Q ss_pred             cCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccc
Q 013578          134 NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY  213 (440)
Q Consensus       134 ~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (440)
                      ..+|..-|.++.|+|.+..|++++.|   ..+.+|......               -.|...- +-...-....+.....
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaD---ksmiiW~pd~~t---------------GiWv~~v-RlGe~gg~a~GF~g~l  323 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASAD---KSMIIWKPDENT---------------GIWVDVV-RLGEVGGSAGGFWGGL  323 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccC---cceEEEecCCcc---------------ceEEEEE-EeecccccccceeeEE
Confidence            45899999999999999999999888   455555544331               0111000 0000001122344556


Q ss_pred             cCCCCCeEEEEeeCCceEEEEeCCCC---ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeE-----------
Q 013578          214 GTADGSTIIASCSEGTDISIWHGKTG---KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIV-----------  279 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-----------  279 (440)
                      +++++. .+++-+..|..++|.....   .+...+.+|...|+.++|+|.|.+|++.+.|-+-|+|---           
T Consensus       324 w~~n~~-~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR  402 (764)
T KOG1063|consen  324 WSPNSN-VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR  402 (764)
T ss_pred             EcCCCC-EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc
Confidence            688887 8888888899999983322   3445567899999999999999999999988877765310           


Q ss_pred             -------------------------------------------------------------------ecC--------CC
Q 013578          280 -------------------------------------------------------------------YSK--------DG  284 (440)
Q Consensus       280 -------------------------------------------------------------------~~~--------~~  284 (440)
                                                                                         ..+        .+
T Consensus       403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G  482 (764)
T KOG1063|consen  403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG  482 (764)
T ss_pred             cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence                                                                               000        00


Q ss_pred             ce----------------------------eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC-----CcEEEEecCcc
Q 013578          285 LV----------------------------KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD-----GTLRVWNINVR  331 (440)
Q Consensus       285 ~~----------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~  331 (440)
                      ..                            .-+..++.+.||.-.|.+++.+|+++++|+++..     ..|++|+..+-
T Consensus       483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W  562 (764)
T KOG1063|consen  483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW  562 (764)
T ss_pred             cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch
Confidence            00                            0112345677999999999999999999999854     35899998754


Q ss_pred             ccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchh---hhhccccCCeEEEEecC
Q 013578          332 YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLD---TAEKAHEGEITCMAWAP  407 (440)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~---~~~~~h~~~v~~v~~~~  407 (440)
                      ...              ....+|...|+.++|||||++|++.+ |..+.+|.........   ...+.|..-|+++.|+|
T Consensus       563 ~~~--------------~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p  628 (764)
T KOG1063|consen  563 LQV--------------QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP  628 (764)
T ss_pred             hhh--------------heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc
Confidence            322              23457888999999999999998755 9999999885543221   11368999999999999


Q ss_pred             CCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          408 KTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       408 ~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ++        .+++|+|.|.+|+||..+..
T Consensus       629 de--------~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  629 DE--------KYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             cc--------ceeEEecCCceEEEEeccCc
Confidence            98        78999999999999998765

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=7.3e-26  Score=186.50  Aligned_cols=238  Identities=15%  Similarity=0.205  Sum_probs=199.4

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE  171 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~  171 (440)
                      ..|.++...|..+.++||+.|.++.++|...++     .+..+.+|.-.|+.+.|+++..                    
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----~l~~~~Gh~kki~~v~~~~~~~--------------------  274 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----ILATLKGHTKKITSVKFHKDLD--------------------  274 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhh-----hhhhccCcceEEEEEEeccchh--------------------
Confidence            468888888887899999999999999988764     5667778888899999988754                    


Q ss_pred             cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc
Q 013578          172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK  251 (440)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  251 (440)
                                                                       .+++++.|..|++|.............|+.+
T Consensus       275 -------------------------------------------------~v~~aSad~~i~vws~~~~s~~~~~~~h~~~  305 (506)
T KOG0289|consen  275 -------------------------------------------------TVITASADEIIRVWSVPLSSEPTSSRPHEEP  305 (506)
T ss_pred             -------------------------------------------------heeecCCcceEEeeccccccCcccccccccc
Confidence                                                             5677778888999999887777788899999


Q ss_pred             ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec--cccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578          252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG--HKSAVTWLCFAPNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                      |+.+..+|.|.||++++.||...+.|++.+.        .+.....  ..-.+++.+|||||..|.+|..|+.|+|||+.
T Consensus       306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~--------~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk  377 (506)
T KOG0289|consen  306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGS--------QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK  377 (506)
T ss_pred             ceeeeeccCCcEEEEecCCceEEEEEccCCc--------EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence            9999999999999999999999999998775        3333221  23458999999999999999999999999998


Q ss_pred             ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578          330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                      .+..              .....+|..+|..++|+.+|-|||++. |+.|++||++..+...++.......|.++.|.+.
T Consensus       378 s~~~--------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S  443 (506)
T KOG0289|consen  378 SQTN--------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS  443 (506)
T ss_pred             Cccc--------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC
Confidence            6542              234457888999999999999999865 7789999999998888775444557999999999


Q ss_pred             CCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          409 TIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       409 ~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      |        .+|+.+|.|=+|++++
T Consensus       444 G--------t~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  444 G--------TYLGIAGSDLQVYICK  460 (506)
T ss_pred             C--------CeEEeecceeEEEEEe
Confidence            8        8999998887777665

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=6.1e-26  Score=175.44  Aligned_cols=270  Identities=16%  Similarity=0.222  Sum_probs=188.8

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      .+-++.||+++|+|++.+-+.++|+||+.|.++++||++++...      .......+|..+.|+++|++++.++.+..+
T Consensus        44 rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l------a~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg  117 (327)
T KOG0643|consen   44 RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL------ATWKTNSPVKRVDFSFGGNLILASTDKQMG  117 (327)
T ss_pred             eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE------EEeecCCeeEEEeeccCCcEEEEEehhhcC
Confidence            57899999999999999999999999999999999999998642      223345889999999999999998876443


Q ss_pred             --ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578          163 --CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK  240 (440)
Q Consensus       163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  240 (440)
                        +.+.+++............      +....   ..+..+       ...+.+.+-++ .+++|..||.|..||+++++
T Consensus       118 ~~~~v~~fdi~~~~~~~~s~e------p~~kI---~t~~sk-------it~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~  180 (327)
T KOG0643|consen  118 YTCFVSVFDIRDDSSDIDSEE------PYLKI---PTPDSK-------ITSALWGPLGE-TIIAGHEDGSISIYDARTGK  180 (327)
T ss_pred             cceEEEEEEccCChhhhcccC------ceEEe---cCCccc-------eeeeeecccCC-EEEEecCCCcEEEEEcccCc
Confidence              4556665543321111100      00000   001111       12233356666 89999999999999999984


Q ss_pred             -eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578          241 -LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       241 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                       .+...+.|...|+.+++++|..++++++.|.+-++||+++..        .+.++. ...+|++.+++|...+++.|+.
T Consensus       181 ~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~--------v~Kty~-te~PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  181 ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE--------VLKTYT-TERPVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             eeeechhhhccccccccccCCcceEEecccCccceeeecccee--------eEEEee-ecccccceecccccceEEecCC
Confidence             456667888999999999999999999999999999986554        455554 4679999999998887777764


Q ss_pred             CCcEEEEecCccccccCCCCc-cccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578          320 DGTLRVWNINVRYHLDEDPKT-LKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET  385 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~  385 (440)
                      -...-+=-..++.-. ...+. ...++..+....+|-.+|++++|+|+|+..++|. ||.|++.....
T Consensus       252 qeA~dVTTT~~r~GK-FEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  252 QEAMDVTTTSTRAGK-FEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ceeeeeeeecccccc-hhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            322222111111000 00000 0112223445678889999999999999998865 89999875543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.4e-25  Score=177.57  Aligned_cols=293  Identities=15%  Similarity=0.200  Sum_probs=200.2

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccc
Q 013578           94 VTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKA  173 (440)
Q Consensus        94 V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  173 (440)
                      -.|+.|++.|.+||.|+.||.|.|||+.+..     ..+....|-.+|++++|+++|+.|++++.|   ..+.+|+....
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----iar~lsaH~~pi~sl~WS~dgr~LltsS~D---~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----IARMLSAHVRPITSLCWSRDGRKLLTSSRD---WSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-----hhhhhhccccceeEEEecCCCCEeeeecCC---ceeEEEeccCC
Confidence            7899999999999999999999999999865     345667888999999999999999999988   56667766554


Q ss_pred             cccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee-eeeC---CC
Q 013578          174 ISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG-NVDT---NQ  249 (440)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~---~~  249 (440)
                      ..........                        ....+.+.|..++.++.+-.+..-.+.++..+.... ....   ..
T Consensus        98 s~l~rirf~s------------------------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln  153 (405)
T KOG1273|consen   98 SPLKRIRFDS------------------------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLN  153 (405)
T ss_pred             CceeEEEccC------------------------ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccc
Confidence            3221111111                        111122233333344444444334444443321110 0000   01


Q ss_pred             CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc-cceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578          250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK-SAVTWLCFAPNSEQIITASKDGTLRVWNI  328 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~~~dg~i~iwd~  328 (440)
                      ....+..|.+.|+++++|...|.+.+||..+.+        ++..++-.. ..|.++.++-.|++|+..+.|..||.|++
T Consensus       154 ~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e--------~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~  225 (405)
T KOG1273|consen  154 SSASHGVFDRRGKYIITGTSKGKLLVYDAETLE--------CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI  225 (405)
T ss_pred             cccccccccCCCCEEEEecCcceEEEEecchhe--------eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence            123345789999999999999999999986654        566655444 67899999999999999999999999998


Q ss_pred             CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578          329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~  406 (440)
                      +.-..........   +......--......++.||.+|.|+++++  ...++||....|.++..+.........++.|+
T Consensus       226 ~di~~~~r~~e~e---~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~wh  302 (405)
T KOG1273|consen  226 SDIDDEGRDGEVE---PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWH  302 (405)
T ss_pred             hhhcccCccCCcC---hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccc
Confidence            7332211110000   000011111234466899999999999876  57899999999999999853333678999999


Q ss_pred             CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          407 PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      |-.        ..+++- ..|.++||.....+
T Consensus       303 p~r--------p~i~si-~sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  303 PVR--------PIIASI-ASGVVYIWAVVQVE  325 (405)
T ss_pred             cce--------eeeeec-cCCceEEEEeeccc
Confidence            985        455555 78999999876654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=2.9e-26  Score=180.99  Aligned_cols=174  Identities=16%  Similarity=0.260  Sum_probs=146.7

Q ss_pred             eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC
Q 013578          241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD  320 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d  320 (440)
                      .++++..|..+|+++.|+|....|++|+.|++|++||+......     +....+ ....+|.++.|+|.|.+|+.|..-
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK-----rA~K~~-qd~~~vrsiSfHPsGefllvgTdH  237 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK-----RAFKVF-QDTEPVRSISFHPSGEFLLVGTDH  237 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHH-----HHHHHh-hccceeeeEeecCCCceEEEecCC
Confidence            46788889999999999999999999999999999998543210     011112 234689999999999999999999


Q ss_pred             CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccC-
Q 013578          321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEG-  398 (440)
Q Consensus       321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~-  398 (440)
                      .++++||+++.++.-           +......|...|+++.+++.|++.++++ ||.|++||--+++++.++..+|.+ 
T Consensus       238 p~~rlYdv~T~Qcfv-----------sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs  306 (430)
T KOG0640|consen  238 PTLRLYDVNTYQCFV-----------SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS  306 (430)
T ss_pred             CceeEEeccceeEee-----------ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence            999999999876532           1223456778899999999999999987 999999999999999999989987 


Q ss_pred             CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      .|.+..|..++        +++++.|.|..+++|.+.++.+
T Consensus       307 evcSa~Ftkn~--------kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  307 EVCSAVFTKNG--------KYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             eeeeEEEccCC--------eEEeecCCcceeeeeeecCCce
Confidence            68899999998        9999999999999999988764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.2e-25  Score=173.23  Aligned_cols=249  Identities=18%  Similarity=0.225  Sum_probs=183.6

Q ss_pred             CCCCCCCCCcccCccc------cccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCC
Q 013578           68 HSHGDKDQNKRHHPLD------VNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP  140 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~~------~~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~  140 (440)
                      .+.++.++....|...      -..+.||.+.|-.++|+| ...+|++++.|++|++||+..+.+.     .. ....+.
T Consensus        35 lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~-----~~-i~~~~e  108 (313)
T KOG1407|consen   35 LASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT-----AR-IETKGE  108 (313)
T ss_pred             eeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE-----EE-eeccCc
Confidence            3566677777666553      235679999999999998 5579999999999999999977532     11 122245


Q ss_pred             CceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe
Q 013578          141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST  220 (440)
Q Consensus       141 v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (440)
                      -.-+.|+|+|.+++++..+.....+   +..+.......++  .....+..|                      ..++. 
T Consensus       109 ni~i~wsp~g~~~~~~~kdD~it~i---d~r~~~~~~~~~~--~~e~ne~~w----------------------~~~nd-  160 (313)
T KOG1407|consen  109 NINITWSPDGEYIAVGNKDDRITFI---DARTYKIVNEEQF--KFEVNEISW----------------------NNSND-  160 (313)
T ss_pred             ceEEEEcCCCCEEEEecCcccEEEE---Eecccceeehhcc--cceeeeeee----------------------cCCCC-
Confidence            5678999999999999888433333   2222211111111  011111222                      33444 


Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      +++.....|.|.|.....-+++..++.|.....|+.|+|+|++||+|+.|..+.+||+...        -++..+..+.-
T Consensus       161 ~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL--------iC~R~isRldw  232 (313)
T KOG1407|consen  161 LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL--------ICERCISRLDW  232 (313)
T ss_pred             EEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh--------hhheeeccccC
Confidence            5555555678999999999999999999999999999999999999999999999998543        37788888999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT  373 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  373 (440)
                      +|..+.|+-+|++||++|+|..|-|=+++++..+.+.+..               .+-..++|+|...+||.+
T Consensus       233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~---------------~~t~tVAWHPk~~LLAyA  290 (313)
T KOG1407|consen  233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE---------------GPTFTVAWHPKRPLLAYA  290 (313)
T ss_pred             ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc---------------CCceeEEecCCCceeeEE
Confidence            9999999999999999999999999999888765432222               234579999999999864

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=2.9e-25  Score=190.27  Aligned_cols=310  Identities=14%  Similarity=0.196  Sum_probs=217.0

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      -..+.||++.|.||...|.|.+|++|+.||+||||.+.++.+.     .. ....+.|.+|+|+|.+..-+.+...+.. 
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-----r~-~~~d~~I~~vaw~P~~~~~vLAvA~~~~-  465 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-----RT-VQFDSEIRSVAWNPLSDLCVLAVAVGEC-  465 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-----EE-EeecceeEEEEecCCCCceeEEEEecCc-
Confidence            4578899999999999999999999999999999999988642     21 2233789999999988754444333222 


Q ss_pred             eEEeeccccccccc---------cccccCCCCCCceeeccccccc-----ceeEEEeecccccccCCCCCeEEEEeeC--
Q 013578          164 SLYMYGEEKAISTN---------EGKQQSKLPGPEIKWEHHKVHD-----KRAILTLFGASATYGTADGSTIIASCSE--  227 (440)
Q Consensus       164 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~--  227 (440)
                       +.+.+..-.....         ..............|.......     ...+........+.++..|. +|++...  
T Consensus       466 -~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~  543 (733)
T KOG0650|consen  466 -VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDS  543 (733)
T ss_pred             -eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCC
Confidence             3333322211110         0001111122345676542222     12233333345566678888 6665443  


Q ss_pred             -CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEE
Q 013578          228 -GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC  306 (440)
Q Consensus       228 -d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  306 (440)
                       ...|.|.++.......-+....+.+.++.|+|...+|++++. ..|+|||+....        .+..+.....+|.+++
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqe--------lvKkL~tg~kwiS~ms  614 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQE--------LVKKLLTGSKWISSMS  614 (733)
T ss_pred             CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHH--------HHHHHhcCCeeeeeee
Confidence             345888998877666556556677899999999999999874 679999986533        5556666677899999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC-
Q 013578          307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE-  384 (440)
Q Consensus       307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~-  384 (440)
                      .+|.|..|+.++.|+.+..+|+.-...             +......|...++.++|++.-.++++|+ ||.+.||.-. 
T Consensus       615 ihp~GDnli~gs~d~k~~WfDldlssk-------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V  681 (733)
T KOG0650|consen  615 IHPNGDNLILGSYDKKMCWFDLDLSSK-------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV  681 (733)
T ss_pred             ecCCCCeEEEecCCCeeEEEEcccCcc-------------hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence            999999999999999999999974321             2223345667788999999999999988 5888887432 


Q ss_pred             -----Ccc---chhhhhccccCC----eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          385 -----TGK---VLDTAEKAHEGE----ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       385 -----~~~---~~~~~~~~h~~~----v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                           ..-   ++..+ .+|...    |.++.|+|..        .+|+++|.||+|++|.
T Consensus       682 Y~Dl~qnpliVPlK~L-~gH~~~~~~gVLd~~wHP~q--------pWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  682 YNDLLQNPLIVPLKRL-RGHEKTNDLGVLDTIWHPRQ--------PWLFSAGADGTIRLFT  733 (733)
T ss_pred             ehhhhcCCceEeeeec-cCceeecccceEeecccCCC--------ceEEecCCCceEEeeC
Confidence                 111   23444 577765    9999999998        7999999999999993

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=1.1e-25  Score=196.02  Aligned_cols=252  Identities=17%  Similarity=0.271  Sum_probs=202.8

Q ss_pred             CCCCCCCCCcccCcc------ccccccccCcceeE-EEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC
Q 013578           68 HSHGDKDQNKRHHPL------DVNTLKGHGDSVTG-LCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG  139 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~-l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~  139 (440)
                      ..+++.|++.+.|..      ..+.+++|.+-|.+ +++-+ |+-+|++|+.|.++.+|.+....     .+....+|..
T Consensus        28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-----P~~~LkgH~s  102 (745)
T KOG0301|consen   28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE-----PLYTLKGHKS  102 (745)
T ss_pred             EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCC-----chhhhhcccc
Confidence            355667778888865      34667889998888 88886 56679999999999999998765     3456678888


Q ss_pred             CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578          140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS  219 (440)
Q Consensus       140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (440)
                      .|++++...++                                                                     
T Consensus       103 nVC~ls~~~~~---------------------------------------------------------------------  113 (745)
T KOG0301|consen  103 NVCSLSIGEDG---------------------------------------------------------------------  113 (745)
T ss_pred             ceeeeecCCcC---------------------------------------------------------------------
Confidence            88887754332                                                                     


Q ss_pred             eEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578          220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK  299 (440)
Q Consensus       220 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  299 (440)
                       .+++|+.|.++++|-.  +++...+.+|+..|.+++.-|++ .+++|+.|.+|++|.-.          ..+.++.+|.
T Consensus       114 -~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~----------~~l~tf~gHt  179 (745)
T KOG0301|consen  114 -TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG----------TLLKTFSGHT  179 (745)
T ss_pred             -ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC----------chhhhhccch
Confidence             5889999999999964  67777899999999999988887 88999999999999852          2688899999


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEE
Q 013578          300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTL  378 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i  378 (440)
                      +-|+++++-|++. |++++.||.|++|++.. .+              +....+|...+.+++...++..+++ |.|+++
T Consensus       180 D~VRgL~vl~~~~-flScsNDg~Ir~w~~~g-e~--------------l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtl  243 (745)
T KOG0301|consen  180 DCVRGLAVLDDSH-FLSCSNDGSIRLWDLDG-EV--------------LLEMHGHTNFVYSISMALSDGLIVSTGEDRTL  243 (745)
T ss_pred             hheeeeEEecCCC-eEeecCCceEEEEeccC-ce--------------eeeeeccceEEEEEEecCCCCeEEEecCCceE
Confidence            9999999998654 88999999999999953 22              2344577888999996666665554 669999


Q ss_pred             EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      +||+..  ++.+.+. -....|+++.+-++|         -+++|++||.||||...
T Consensus       244 riW~~~--e~~q~I~-lPttsiWsa~~L~Ng---------DIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  244 RIWKKD--ECVQVIT-LPTTSIWSAKVLLNG---------DIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEeecC--ceEEEEe-cCccceEEEEEeeCC---------CEEEeccCceEEEEEec
Confidence            999987  6666664 233489999999886         58899999999999876

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.9e-26  Score=185.63  Aligned_cols=269  Identities=17%  Similarity=0.269  Sum_probs=202.2

Q ss_pred             CCCCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578           62 HSKPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP  137 (440)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~  137 (440)
                      ..++...++++.|+.+++|+.    ++.+|++|.+.|..|++..  ..++|++.|++|+.|.++...      ... ...
T Consensus        76 p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p------~~t-ilg  146 (433)
T KOG0268|consen   76 PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPP------LHT-ILG  146 (433)
T ss_pred             cchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCc------cee-eec
Confidence            334566789999999999987    4678999999999999976  789999999999999987631      111 122


Q ss_pred             CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578          138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD  217 (440)
Q Consensus       138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (440)
                      ...+..+.-+..+..+++++.     .+.+|+.....           +...+.|.....            .++.++|.
T Consensus       147 ~s~~~gIdh~~~~~~FaTcGe-----~i~IWD~~R~~-----------Pv~smswG~Dti------------~svkfNpv  198 (433)
T KOG0268|consen  147 KSVYLGIDHHRKNSVFATCGE-----QIDIWDEQRDN-----------PVSSMSWGADSI------------SSVKFNPV  198 (433)
T ss_pred             cccccccccccccccccccCc-----eeeecccccCC-----------ccceeecCCCce------------eEEecCCC
Confidence            355667777777777777753     46666655432           111223322221            22334566


Q ss_pred             CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578          218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                      ...+|++|..|+.|.+||++++.+++.+.. ...-+.++|+|.+-.|++|++|..++.||++...       .++....+
T Consensus       199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-------~p~~v~~d  270 (433)
T KOG0268|consen  199 ETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-------RPLNVHKD  270 (433)
T ss_pred             cchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhc-------ccchhhcc
Confidence            666899999999999999999998877654 2345779999998899999999999999998766       36778899


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC
Q 013578          298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS  376 (440)
Q Consensus       298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~  376 (440)
                      |.+.|.+++|+|.|+-|++||.|.+|+||..+.+..-.       .+     .. .....|.++.||.|.+|+++|+ |+
T Consensus       271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd-------iY-----ht-kRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD-------IY-----HT-KRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             cceeEEEeccCCCcchhccccccceEEEeecCCCcchh-------hh-----hH-hhhheeeEEEEeccccEEEecCCCc
Confidence            99999999999999999999999999999998553211       00     00 1123478999999999999987 79


Q ss_pred             EEEEEEcCCccc
Q 013578          377 TLQWLSVETGKV  388 (440)
Q Consensus       377 ~i~i~d~~~~~~  388 (440)
                      +|++|.....+.
T Consensus       338 nvRlWka~Asek  349 (433)
T KOG0268|consen  338 NVRLWKAKASEK  349 (433)
T ss_pred             ceeeeecchhhh
Confidence            999998755443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.2e-25  Score=184.50  Aligned_cols=202  Identities=17%  Similarity=0.254  Sum_probs=163.5

Q ss_pred             ccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce-eeeee
Q 013578          213 YGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV-KAVTS  291 (440)
Q Consensus       213 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~  291 (440)
                      ..+|.|. +++.|+..+.|++|.+.+|..+..+..|-..|+|+.|+-||.+|++|+.||.|.+|.+...-+... ....+
T Consensus        88 ~s~n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p  166 (476)
T KOG0646|consen   88 ASSNLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKP  166 (476)
T ss_pred             ecCCCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccc
Confidence            3466676 777777999999999999999999999999999999999999999999999999999865332211 24457


Q ss_pred             eeeeeccccceEEEEEcCCC--CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE
Q 013578          292 VMQLKGHKSAVTWLCFAPNS--EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI  369 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  369 (440)
                      .+.+..|.-+|+.+...+.|  .+|+|+|.|.++++||+..+..+..       +        ..+..+.+++.+|-++.
T Consensus       167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt-------i--------~fp~si~av~lDpae~~  231 (476)
T KOG0646|consen  167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT-------I--------TFPSSIKAVALDPAERV  231 (476)
T ss_pred             eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE-------E--------ecCCcceeEEEcccccE
Confidence            88899999999999887753  5799999999999999997754321       1        11244778999999998


Q ss_pred             EEEec-CCEEEEEEcCCcc----------------chhhhhccccC--CeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578          370 LAATH-GSTLQWLSVETGK----------------VLDTAEKAHEG--EITCMAWAPKTIPMGNQQVSVLATSSVDKKVK  430 (440)
Q Consensus       370 l~~~~-~~~i~i~d~~~~~----------------~~~~~~~~h~~--~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~  430 (440)
                      +.+|. +|.|.+.++....                ....+ .+|.+  .|+|++.+-|+        .+|++|+.||+|+
T Consensus       232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~Dg--------tlLlSGd~dg~Vc  302 (476)
T KOG0646|consen  232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDG--------TLLLSGDEDGKVC  302 (476)
T ss_pred             EEecCCcceEEeeehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCc--------cEEEeeCCCCCEE
Confidence            88876 8999888764322                22333 57888  99999999999        8999999999999


Q ss_pred             EEeCCCCCC
Q 013578          431 LWLAPSLES  439 (440)
Q Consensus       431 vw~~~~~~~  439 (440)
                      |||+.+.++
T Consensus       303 vWdi~S~Q~  311 (476)
T KOG0646|consen  303 VWDIYSKQC  311 (476)
T ss_pred             EEecchHHH
Confidence            999977543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2e-25  Score=204.34  Aligned_cols=272  Identities=22%  Similarity=0.312  Sum_probs=197.9

Q ss_pred             CCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeec-ccccccC
Q 013578          137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFG-ASATYGT  215 (440)
Q Consensus       137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  215 (440)
                      ++..|.++..+|++..+++++...++... +|+.............. ++          .+ ...+..+.+ ..++.++
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~-iW~~~~vl~~~~~~~~~-l~----------k~-l~~m~~h~~sv~CVR~S   78 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIV-IWSQDPVLDEKEEKNEN-LP----------KH-LCTMDDHDGSVNCVRFS   78 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccce-eeccccccchhhhhhcc-cc----------hh-heeeccccCceeEEEEC
Confidence            34568999999999999999833322222 77665543221111110 11          01 111222222 3344479


Q ss_pred             CCCCeEEEEeeCCceEEEEeCCC------------------CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEE
Q 013578          216 ADGSTIIASCSEGTDISIWHGKT------------------GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWE  277 (440)
Q Consensus       216 ~~~~~~l~s~~~d~~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  277 (440)
                      +||+ +|++|++|+.|.+|+...                  .+.+..+.+|...|..++|+|++.+|++++.|++|.||+
T Consensus        79 ~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn  157 (942)
T KOG0973|consen   79 PDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWN  157 (942)
T ss_pred             CCCC-eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEc
Confidence            9999 999999999999998762                  135667889999999999999999999999999999999


Q ss_pred             eEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578          278 IVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ  357 (440)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (440)
                      .++..        .+..+.+|.+.|..+.|.|-|++||+-+.|++|++|++..-..       .+.+..+... ......
T Consensus       158 ~~tF~--------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i-------~k~It~pf~~-~~~~T~  221 (942)
T KOG0973|consen  158 AKTFE--------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI-------EKSITKPFEE-SPLTTF  221 (942)
T ss_pred             cccce--------eeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee-------eEeeccchhh-CCCcce
Confidence            86654        7889999999999999999999999999999999999764211       1222222221 222344


Q ss_pred             eeeEEeCCCCCEEEEec-----CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCC----C-CCcc----eEEEEe
Q 013578          358 YDRLSLSSDGKILAATH-----GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPM----G-NQQV----SVLATS  423 (440)
Q Consensus       358 v~~~~~s~~g~~l~~~~-----~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~----~-~~~~----~~l~t~  423 (440)
                      +.+++|||||++|++..     ...+.|.+..+.+.-..+ .||.+++.+++|+|.-..-    + ..+.    ..+|+|
T Consensus       222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L-vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg  300 (942)
T KOG0973|consen  222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL-VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG  300 (942)
T ss_pred             eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeee-ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence            78999999999999853     358999999988888888 5999999999999852110    0 0111    278999


Q ss_pred             eCCCeEEEEeCCCCCC
Q 013578          424 SVDKKVKLWLAPSLES  439 (440)
Q Consensus       424 ~~Dg~i~vw~~~~~~~  439 (440)
                      |.|++|.||.....+|
T Consensus       301 SqDrSlSVW~T~~~RP  316 (942)
T KOG0973|consen  301 SQDRSLSVWNTALPRP  316 (942)
T ss_pred             cCCccEEEEecCCCCc
Confidence            9999999999876554

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.6e-25  Score=196.77  Aligned_cols=220  Identities=18%  Similarity=0.173  Sum_probs=163.2

Q ss_pred             cccCccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEE
Q 013578           77 KRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVA  156 (440)
Q Consensus        77 ~~~~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  156 (440)
                      -.+.+.+++.|.||.+.|..|.||.+ ++|+++|.|+|||||++....+     + ..+.|...|+||+|+|...     
T Consensus       355 f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C-----L-~~F~HndfVTcVaFnPvDD-----  422 (712)
T KOG0283|consen  355 FVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC-----L-KVFSHNDFVTCVAFNPVDD-----  422 (712)
T ss_pred             ccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcce-----e-eEEecCCeeEEEEecccCC-----
Confidence            34456789999999999999999954 5999999999999999986542     2 2346779999999998532     


Q ss_pred             eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578          157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG  236 (440)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~  236 (440)
                                                                                    + ++++|+-|+.||||++
T Consensus       423 --------------------------------------------------------------r-yFiSGSLD~KvRiWsI  439 (712)
T KOG0283|consen  423 --------------------------------------------------------------R-YFISGSLDGKVRLWSI  439 (712)
T ss_pred             --------------------------------------------------------------C-cEeecccccceEEeec
Confidence                                                                          2 8999999999999999


Q ss_pred             CCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee-eeccccceEEEEEcCCC-CEE
Q 013578          237 KTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ-LKGHKSAVTWLCFAPNS-EQI  314 (440)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~-~~l  314 (440)
                      ...+.+.....+ .-|++++|.|||+..++|+.+|.+++|+....+-........... -..|. .|+++.|.|.. ..+
T Consensus       440 ~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~v  517 (712)
T KOG0283|consen  440 SDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEV  517 (712)
T ss_pred             CcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeE
Confidence            988777666654 679999999999999999999999999986443111000000000 01133 79999999844 357


Q ss_pred             EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578          315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET  385 (440)
Q Consensus       315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~  385 (440)
                      +..+.|..|||+|.+....+.....            ......-...+|+.||++|++++ |..|++|+...
T Consensus       518 LVTSnDSrIRI~d~~~~~lv~KfKG------------~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  518 LVTSNDSRIRIYDGRDKDLVHKFKG------------FRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             EEecCCCceEEEeccchhhhhhhcc------------cccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            7788899999999975543321110            01111123588999999999876 88999999743

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5e-24  Score=185.30  Aligned_cols=256  Identities=21%  Similarity=0.270  Sum_probs=203.5

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY  168 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~  168 (440)
                      --..+|.+|||+.+.+.||.+-.||.|.+|++...-   ........+.++.|.+++|.+.+                  
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w---~~~~vi~g~~drsIE~L~W~e~~------------------   81 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW---FLEPVIHGPEDRSIESLAWAEGG------------------   81 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCCc---eeeEEEecCCCCceeeEEEccCC------------------
Confidence            346789999999999999999999999999998642   22233334666789999998443                  


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN  248 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  248 (440)
                                                                          .|++.+.+|.|.-||+.++++...+...
T Consensus        82 ----------------------------------------------------RLFS~g~sg~i~EwDl~~lk~~~~~d~~  109 (691)
T KOG2048|consen   82 ----------------------------------------------------RLFSSGLSGSITEWDLHTLKQKYNIDSN  109 (691)
T ss_pred             ----------------------------------------------------eEEeecCCceEEEEecccCceeEEecCC
Confidence                                                                5778888999999999999999999999


Q ss_pred             CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578          249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI  328 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~  328 (440)
                      .+.|.+++.+|.+..+++|++||.+..++...+.      ......+...++.|.+++|+|++..|++|+.||.|++||.
T Consensus       110 gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~------I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~  183 (691)
T KOG2048|consen  110 GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK------ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV  183 (691)
T ss_pred             CcceeEEEeCCccceEEeecCCceEEEEecCCce------EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence            9999999999999999999999955555543322      2223334445789999999999999999999999999999


Q ss_pred             CccccccCCCCccccccccccC-CCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecC
Q 013578          329 NVRYHLDEDPKTLKVLPIPLLD-SNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP  407 (440)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~  407 (440)
                      ..+..+.       ........ ..+...-|.++.|-.++.++.+-+.|.|.+||...+.++..+ ..|.+.|.+++..+
T Consensus       184 ~~~~t~~-------~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~  255 (691)
T KOG2048|consen  184 KSGQTLH-------IITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSH-SCHDADVLALAVAD  255 (691)
T ss_pred             CCCceEE-------EeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhh-hhhhcceeEEEEcC
Confidence            9775442       11111111 122455677888887776655556899999999999999998 58999999999999


Q ss_pred             CCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          408 KTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       408 ~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      ++        .+++++|.|+.|..+...+.++
T Consensus       256 ~~--------d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  256 NE--------DRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             CC--------CeEEEccCCCceEEEEecCCcc
Confidence            97        8999999999999998877643

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.5e-26  Score=196.95  Aligned_cols=266  Identities=17%  Similarity=0.264  Sum_probs=211.0

Q ss_pred             CCCCCCCCCCcccCcc----------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC
Q 013578           67 SHSHGDKDQNKRHHPL----------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP  136 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~----------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~  136 (440)
                      ...+++.|+..+.|..          .+..++.|.+.|+.+....+|+.|+++|.|-+|++|+......   -+......
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~---~c~stir~  115 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT---FCMSTIRT  115 (735)
T ss_pred             eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc---hhHhhhhc
Confidence            4567788888887753          3667899999999999999999999999999999999886642   24455667


Q ss_pred             CCCCCceEEEc-cCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC
Q 013578          137 PGGPPTAVAFA-DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT  215 (440)
Q Consensus       137 ~~~~v~~v~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (440)
                      |...|.++++- ++.                                                                 
T Consensus       116 H~DYVkcla~~ak~~-----------------------------------------------------------------  130 (735)
T KOG0308|consen  116 HKDYVKCLAYIAKNN-----------------------------------------------------------------  130 (735)
T ss_pred             ccchheeeeecccCc-----------------------------------------------------------------
Confidence            88899998873 221                                                                 


Q ss_pred             CCCCeEEEEeeCCceEEEEeCCCCc--eeee--------ee-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCC
Q 013578          216 ADGSTIIASCSEGTDISIWHGKTGK--LLGN--------VD-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDG  284 (440)
Q Consensus       216 ~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~--------~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  284 (440)
                          .++++|+-|+.|.+||+.++.  .+..        +. ++...+.+++.++.|..|++|+..+.|++||.++.+  
T Consensus       131 ----~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~--  204 (735)
T KOG0308|consen  131 ----ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK--  204 (735)
T ss_pred             ----eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc--
Confidence                178999999999999999772  2222        22 567789999999999999999999999999998877  


Q ss_pred             ceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578          285 LVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS  364 (440)
Q Consensus       285 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  364 (440)
                            .+..++||...|..+..++||+.++++|.||+|++||+...+|+..              ...|...|.++..+
T Consensus       205 ------kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T--------------~~vH~e~VWaL~~~  264 (735)
T KOG0308|consen  205 ------KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT--------------YIVHKEGVWALQSS  264 (735)
T ss_pred             ------ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee--------------EEeccCceEEEeeC
Confidence                  6888999999999999999999999999999999999997766532              12344558899999


Q ss_pred             CCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          365 SDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       365 ~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      |+-..+.+|+ |+.|+.-|+.+......+ -....+|..+..+...        .-+-.+..|+.|+-|...
T Consensus       265 ~sf~~vYsG~rd~~i~~Tdl~n~~~~tli-ck~daPv~~l~~~~~~--------~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  265 PSFTHVYSGGRDGNIYRTDLRNPAKSTLI-CKEDAPVLKLHLHEHD--------NSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             CCcceEEecCCCCcEEecccCCchhheEe-ecCCCchhhhhhcccc--------CCceeeeccccceecCCc
Confidence            9999888876 899999999885433333 2355567777777543        344667778888888765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.1e-25  Score=184.34  Aligned_cols=259  Identities=16%  Similarity=0.215  Sum_probs=196.2

Q ss_pred             CCCCCCCCCCcccCccc------cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCC
Q 013578           67 SHSHGDKDQNKRHHPLD------VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP  140 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~~------~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~  140 (440)
                      ..+++..|+.++.|...      +.+|.|-.+.|+.+.|.++++++++++.|+.+++|+++...     ......+|...
T Consensus       189 tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-----~~~TLsGHtdk  263 (459)
T KOG0288|consen  189 TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-----LRHTLSGHTDK  263 (459)
T ss_pred             hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh-----hhhhhcccccc
Confidence            35778888888888653      56788888999999999999999999999999999998764     34566779999


Q ss_pred             CceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe
Q 013578          141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST  220 (440)
Q Consensus       141 v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (440)
                      |+++.|......+++++.+   ..+..|+..+....                        +.+........+...   ..
T Consensus       264 Vt~ak~~~~~~~vVsgs~D---RtiK~WDl~k~~C~------------------------kt~l~~S~cnDI~~~---~~  313 (459)
T KOG0288|consen  264 VTAAKFKLSHSRVVSGSAD---RTIKLWDLQKAYCS------------------------KTVLPGSQCNDIVCS---IS  313 (459)
T ss_pred             eeeehhhccccceeecccc---chhhhhhhhhhhee------------------------ccccccccccceEec---ce
Confidence            9999999887777777776   45555555443211                        111111111111111   12


Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec---
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG---  297 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---  297 (440)
                      .+++|-.|+.|++||.++..+...+..+. .|+++..++++..|.+.+.|.++.+.|++...        ....+.+   
T Consensus       314 ~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e--------I~~~~sA~g~  384 (459)
T KOG0288|consen  314 DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE--------IRQTFSAEGF  384 (459)
T ss_pred             eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc--------EEEEeecccc
Confidence            68889999999999999999999998765 89999999999999999999999999997654        2222221   


Q ss_pred             -cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578          298 -HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G  375 (440)
Q Consensus       298 -h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~  375 (440)
                       .....+.+.|||++.|+++||.||.|+||++.++++...            .........|++++|+|.|..|++++ +
T Consensus       385 k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~------------l~~s~s~~aI~s~~W~~sG~~Llsadk~  452 (459)
T KOG0288|consen  385 KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV------------LSLSTSNAAITSLSWNPSGSGLLSADKQ  452 (459)
T ss_pred             ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE------------eccCCCCcceEEEEEcCCCchhhcccCC
Confidence             123378899999999999999999999999998765321            11122223699999999999888876 7


Q ss_pred             CEEEEE
Q 013578          376 STLQWL  381 (440)
Q Consensus       376 ~~i~i~  381 (440)
                      +.+.+|
T Consensus       453 ~~v~lW  458 (459)
T KOG0288|consen  453 KAVTLW  458 (459)
T ss_pred             cceEec
Confidence            788887

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=1.4e-23  Score=183.08  Aligned_cols=278  Identities=14%  Similarity=0.154  Sum_probs=185.3

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccccccccc
Q 013578          103 GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ  182 (440)
Q Consensus       103 g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (440)
                      ++.++|++.|+.|++||+.++..     ......+ ..+..++|+|+++.+++++..  ...+.+|+..........   
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~-----~~~~~~~-~~~~~l~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~---   69 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEV-----TRTFPVG-QRPRGITLSKDGKLLYVCASD--SDTIQVIDLATGEVIGTL---   69 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCce-----EEEEECC-CCCCceEECCCCCEEEEEECC--CCeEEEEECCCCcEEEec---
Confidence            35788999999999999987642     2222222 447789999999987655433  245666765432110000   


Q ss_pred             CCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC
Q 013578          183 SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR  262 (440)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  262 (440)
                                .           .........++++++.++++++.++.|++||+.+++.+..+..+ ..+..++|+|+|+
T Consensus        70 ----------~-----------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~  127 (300)
T TIGR03866        70 ----------P-----------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGK  127 (300)
T ss_pred             ----------c-----------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCC
Confidence                      0           00011123347888856667777899999999988877776543 3467899999999


Q ss_pred             eEEEEecCCC-EEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCc
Q 013578          263 FLAAAAFTAD-VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKT  340 (440)
Q Consensus       263 ~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~  340 (440)
                      +++++..++. +.+||.....        ...... ....+.+++|+|++++|+.+ ..++.|++||++++........ 
T Consensus       128 ~l~~~~~~~~~~~~~d~~~~~--------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~-  197 (300)
T TIGR03866       128 IVVNTSETTNMAHFIDTKTYE--------IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF-  197 (300)
T ss_pred             EEEEEecCCCeEEEEeCCCCe--------EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee-
Confidence            9999987754 6677865432        222222 22346789999999988544 4699999999987654321110 


Q ss_pred             cccccccccCCCCCeeeeeeEEeCCCCCEEEE--ecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce
Q 013578          341 LKVLPIPLLDSNGATLQYDRLSLSSDGKILAA--THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS  418 (440)
Q Consensus       341 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~  418 (440)
                            ..............++|+|+++++++  +.++.+.+||..+++....+.  +...+.+++|+|++        .
T Consensus       198 ------~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g--------~  261 (300)
T TIGR03866       198 ------EIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDE--------K  261 (300)
T ss_pred             ------cccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCC--------C
Confidence                  00000001112346889999997554  446789999999988776553  45679999999998        6


Q ss_pred             EEEEe-eCCCeEEEEeCCCCCC
Q 013578          419 VLATS-SVDKKVKLWLAPSLES  439 (440)
Q Consensus       419 ~l~t~-~~Dg~i~vw~~~~~~~  439 (440)
                      +|+++ +.+|.|++||+.++++
T Consensus       262 ~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       262 YLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCCcE
Confidence            77765 5699999999998763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=5.8e-24  Score=168.02  Aligned_cols=295  Identities=16%  Similarity=0.209  Sum_probs=203.7

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      -.+.|..+.|+|.++.|+.++.||++++|++...+      +.....|+.++.+++|.+ ...+++++.+   ..+..++
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~------l~~~~~~~~plL~c~F~d-~~~~~~G~~d---g~vr~~D   81 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS------LKLKFKHGAPLLDCAFAD-ESTIVTGGLD---GQVRRYD   81 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh------hhhheecCCceeeeeccC-CceEEEeccC---ceEEEEE
Confidence            36789999999999999999999999999998763      344556789999999987 4567777766   3555555


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ  249 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  249 (440)
                      ........-                 ..|...+       .++...+. ...+++|+.|++|++||.+.......+....
T Consensus        82 ln~~~~~~i-----------------gth~~~i-------~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k  136 (323)
T KOG1036|consen   82 LNTGNEDQI-----------------GTHDEGI-------RCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGTFDQGK  136 (323)
T ss_pred             ecCCcceee-----------------ccCCCce-------EEEEeecc-CCeEEEcccCccEEEEeccccccccccccCc
Confidence            443311100                 0011111       11111222 2279999999999999999765665555433


Q ss_pred             CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578          250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                       .|.++.  -.|+.|++|+.+..+.+||++......      ...-...+-.+.|+++-|++.-+++++-||.|.+=.++
T Consensus       137 -kVy~~~--v~g~~LvVg~~~r~v~iyDLRn~~~~~------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d  207 (323)
T KOG1036|consen  137 -KVYCMD--VSGNRLVVGTSDRKVLIYDLRNLDEPF------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD  207 (323)
T ss_pred             -eEEEEe--ccCCEEEEeecCceEEEEEcccccchh------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence             565554  458899999999999999998765211      11122344568999999998889999999999886666


Q ss_pred             ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578          330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                      ...+.+...-..++... .........+|++++|+|--..+|+| +||.|.+||..+.+.+..+. .....|..++|+.+
T Consensus       208 ~s~~~~skkyaFkCHr~-~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-~~~~SI~slsfs~d  285 (323)
T KOG1036|consen  208 DSEEAQSKKYAFKCHRL-SEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-KYETSISSLSFSMD  285 (323)
T ss_pred             CchHHhhhceeEEeeec-ccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-CCCCceEEEEeccC
Confidence            44222211111111111 11222334679999999998888885 59999999999999999884 55678999999999


Q ss_pred             CCCCCCCcceEEEEeeC-----CCe-------EEEEeCCCCC
Q 013578          409 TIPMGNQQVSVLATSSV-----DKK-------VKLWLAPSLE  438 (440)
Q Consensus       409 ~~~~~~~~~~~l~t~~~-----Dg~-------i~vw~~~~~~  438 (440)
                      |        ..||.++.     ...       |.|.++...|
T Consensus       286 G--------~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~e  319 (323)
T KOG1036|consen  286 G--------SLLAIASSYQYERADTPTHERNAIFIRDLTDYE  319 (323)
T ss_pred             C--------CeEEEEechhhhcCCCCCCCCCceEEEeccccc
Confidence            9        89998875     222       6676665544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=2.8e-25  Score=194.27  Aligned_cols=262  Identities=16%  Similarity=0.210  Sum_probs=204.1

Q ss_pred             ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      ++.....-+-...|++++.||+|++||+|..-|++|||++...+.     ......|+..|.++.|+....         
T Consensus       449 dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-----~~~~eAHesEilcLeyS~p~~---------  514 (1080)
T KOG1408|consen  449 DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-----TCFMEAHESEILCLEYSFPVL---------  514 (1080)
T ss_pred             cccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-----hhheecccceeEEEeecCchh---------
Confidence            333444445677899999999999999999999999999986542     334457889999999874211         


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-  239 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-  239 (440)
                                                                               +..+|++++.|..|++||.... 
T Consensus       515 ---------------------------------------------------------~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  515 ---------------------------------------------------------TNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             ---------------------------------------------------------hhHhhhhccCCceEEEEeccccc
Confidence                                                                     1118999999999999998744 


Q ss_pred             ceeeeeeCCCCcccEEEecCCC--CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578          240 KLLGNVDTNQLKNNMAAISPNG--RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  317 (440)
                      .+++++..|...|+++.|.-.|  ..+++++.|..|.+--.+...++..  + ...+.......+..|+..|..++++++
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~--f-~r~t~t~~ktTlYDm~Vdp~~k~v~t~  614 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL--F-PRHTQTLSKTTLYDMAVDPTSKLVVTV  614 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee--c-cccccccccceEEEeeeCCCcceEEEE
Confidence            5678899999999999998877  6788888888776433322221110  0 111111123568899999999999999


Q ss_pred             eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhccc
Q 013578          318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEKAH  396 (440)
Q Consensus       318 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h  396 (440)
                      +.|..|+|||++.++..+.           +....++....-.+...|.|-|+|+. +|.++.++|..+|+++... .+|
T Consensus       615 cQDrnirif~i~sgKq~k~-----------FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-~GH  682 (1080)
T KOG1408|consen  615 CQDRNIRIFDIESGKQVKS-----------FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-TGH  682 (1080)
T ss_pred             ecccceEEEeccccceeee-----------ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-cCc
Confidence            9999999999998765432           22333455556689999999999984 6999999999999999998 599


Q ss_pred             cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          397 EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       397 ~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ...|+.+.|.+|-        +.|++.+.||.|.||.++.
T Consensus       683 sE~VTG~kF~nDC--------kHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  683 SEAVTGVKFLNDC--------KHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             chheeeeeecccc--------hhheeecCCceEEEEECch
Confidence            9999999999998        8999999999999999864

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=3.2e-24  Score=186.90  Aligned_cols=302  Identities=18%  Similarity=0.252  Sum_probs=212.7

Q ss_pred             ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc----------------------------------------
Q 013578           87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK----------------------------------------  126 (440)
Q Consensus        87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~----------------------------------------  126 (440)
                      +.||++.|+++.|+|++..|+++|.|+++.+|.-++....                                        
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence            4599999999999999999999999999999987653110                                        


Q ss_pred             -------ceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecc---cc
Q 013578          127 -------SFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEH---HK  196 (440)
Q Consensus       127 -------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  196 (440)
                             .+.......+|-..|.+++|+|.|.+|++++.|.....+.-|..+..                  |..   +.
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~------------------wHEiaRPQ  404 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE------------------WHEIARPQ  404 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc------------------eeeecccc
Confidence                   01111223467788999999999999999998866666555521111                  111   01


Q ss_pred             cccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC---------------------------------------
Q 013578          197 VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK---------------------------------------  237 (440)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~---------------------------------------  237 (440)
                      .|....       .++.+.+ ++..+++|.+...+|+|+..                                       
T Consensus       405 iHGyDl-------~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~  476 (764)
T KOG1063|consen  405 IHGYDL-------TCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP  476 (764)
T ss_pred             cccccc-------eeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence            111111       1111111 13356666666666666431                                       


Q ss_pred             ----CCc---------------------------------eeeeeeCCCCcccEEEecCCCCeEEEEecCC-----CEEE
Q 013578          238 ----TGK---------------------------------LLGNVDTNQLKNNMAAISPNGRFLAAAAFTA-----DVKV  275 (440)
Q Consensus       238 ----~~~---------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i  275 (440)
                          +|.                                 .+.++.+|...|.+++.+|+++++|+++...     .|++
T Consensus       477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~l  556 (764)
T KOG1063|consen  477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRL  556 (764)
T ss_pred             cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEE
Confidence                000                                 0123456778899999999999999998644     4899


Q ss_pred             EEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCe
Q 013578          276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT  355 (440)
Q Consensus       276 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (440)
                      |+..+-.        ....+.+|+-.|+.++|+|||++|++.|.|+++.+|.........          ........|.
T Consensus       557 w~t~~W~--------~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e----------~~fa~~k~Ht  618 (764)
T KOG1063|consen  557 WNTANWL--------QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE----------FRFACLKAHT  618 (764)
T ss_pred             Eeccchh--------hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh----------hhhccccccc
Confidence            9975443        566799999999999999999999999999999999985332111          1122356778


Q ss_pred             eeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc--cchhh-hhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEE
Q 013578          356 LQYDRLSLSSDGKILAATH-GSTLQWLSVETG--KVLDT-AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL  431 (440)
Q Consensus       356 ~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~--~~~~~-~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~v  431 (440)
                      .-|..+.|+|++.++++++ |..|.+|.....  +.+.. ....+..+|++++|.|-.   ...+...++.|-+.|.|.+
T Consensus       619 RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~---~~e~~~~vavGle~GeI~l  695 (764)
T KOG1063|consen  619 RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVD---HNEKGDVVAVGLEKGEIVL  695 (764)
T ss_pred             eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccc---cccccceEEEEecccEEEE
Confidence            8899999999999999987 999999998877  43333 113588999999999864   1122247788888999999


Q ss_pred             EeCC
Q 013578          432 WLAP  435 (440)
Q Consensus       432 w~~~  435 (440)
                      |+..
T Consensus       696 ~~~~  699 (764)
T KOG1063|consen  696 WRRK  699 (764)
T ss_pred             Eecc
Confidence            9965

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.2e-26  Score=202.74  Aligned_cols=238  Identities=16%  Similarity=0.325  Sum_probs=204.8

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      .+.+..|...|.|+..-..++.+++|+.|-.+-+|.+.....     ...+..|..+|.++.|+++..            
T Consensus        21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-----i~S~~~hespIeSl~f~~~E~------------   83 (825)
T KOG0267|consen   21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-----ITSLTGHESPIESLTFDTSER------------   83 (825)
T ss_pred             chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-----hheeeccCCcceeeecCcchh------------
Confidence            355678999999999977889999999999999999875542     233678889999999987643            


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                                                                               ++++|+.+|+|++||++..+.++
T Consensus        84 ---------------------------------------------------------LlaagsasgtiK~wDleeAk~vr  106 (825)
T KOG0267|consen   84 ---------------------------------------------------------LLAAGSASGTIKVWDLEEAKIVR  106 (825)
T ss_pred             ---------------------------------------------------------hhcccccCCceeeeehhhhhhhh
Confidence                                                                     68888999999999999999999


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL  323 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i  323 (440)
                      ++.+|...+..+.|+|-+.+++.|+.|+.+++||++...        +.+.+.+|...|.++.|+|+|+++++++.|.++
T Consensus       107 tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G--------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv  178 (825)
T KOG0267|consen  107 TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG--------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV  178 (825)
T ss_pred             hhhccccCcceeeeccceEEeccccccccceehhhhccC--------ceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence            999999999999999999999999999999999998665        888999999999999999999999999999999


Q ss_pred             EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEE
Q 013578          324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITC  402 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~  402 (440)
                      +|||+..++.+              .....|...+..+.|+|..-+++.|+ |+.+++||+++-+.+.... .....|.+
T Consensus       179 ki~d~~agk~~--------------~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~~v~~  243 (825)
T KOG0267|consen  179 KIWDLTAGKLS--------------KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETDGVRS  243 (825)
T ss_pred             eeecccccccc--------------cccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccCCcee
Confidence            99999866543              23345666788888999999999876 9999999999999988874 56789999


Q ss_pred             EEecCCCCCCCCCcceEEEEeeCC
Q 013578          403 MAWAPKTIPMGNQQVSVLATSSVD  426 (440)
Q Consensus       403 v~~~~~~~~~~~~~~~~l~t~~~D  426 (440)
                      .+|+|++        ..+++|..+
T Consensus       244 ~~fn~~~--------~~~~~G~q~  259 (825)
T KOG0267|consen  244 LAFNPDG--------KIVLSGEQI  259 (825)
T ss_pred             eeecCCc--------eeeecCchh
Confidence            9999998        666666543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=1.6e-26  Score=183.70  Aligned_cols=170  Identities=21%  Similarity=0.339  Sum_probs=145.4

Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      ....+.|..|+|||++|++|+.||.|.+|+..+++-..-..++....+-.+..+|.|+.|+.|...|++|+.||.|++|.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR  291 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence            34567899999999999999999999999987776322222223344556889999999999999999999999999999


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~  406 (440)
                      ++++.|++..             ...|...|+++.||.|+..+.+++ |..+++.-+++|+++..+ ++|..-|+...|.
T Consensus       292 i~tG~ClRrF-------------drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft  357 (508)
T KOG0275|consen  292 IETGQCLRRF-------------DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFT  357 (508)
T ss_pred             EecchHHHHh-------------hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh-cCccccccceEEc
Confidence            9999876432             124566799999999998777755 999999999999999999 6999999999999


Q ss_pred             CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          407 PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      ++|        ..+++++.||+|+||+..+.+|
T Consensus       358 ~dG--------~~iisaSsDgtvkvW~~KtteC  382 (508)
T KOG0275|consen  358 DDG--------HHIISASSDGTVKVWHGKTTEC  382 (508)
T ss_pred             CCC--------CeEEEecCCccEEEecCcchhh
Confidence            999        8999999999999999998877

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=3.3e-24  Score=190.60  Aligned_cols=333  Identities=18%  Similarity=0.240  Sum_probs=227.9

Q ss_pred             CCCCCCCCcccCcccc-----ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578           69 SHGDKDQNKRHHPLDV-----NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA  143 (440)
Q Consensus        69 ~~~~~~~~~~~~~~~~-----~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~  143 (440)
                      +.+...+....|++.-     .....|.+.|..+.|-|....++|++.|+.+++|-.+++... .+.++...+|..+..+
T Consensus       261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~-pR~LR~R~GHs~Pp~~  339 (910)
T KOG1539|consen  261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV-PRLLRSRGGHSAPPSC  339 (910)
T ss_pred             EeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc-chheeeccCCCCCchh
Confidence            4555666667776642     234479999999999999999999999999999988876654 3467788899999999


Q ss_pred             EEEc-cCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578          144 VAFA-DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII  222 (440)
Q Consensus       144 v~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  222 (440)
                      +.|. .++..++.++.|..-..+.+.................. .+.-...........+....+  ....-....+ .+
T Consensus       340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~-kk~~~~~~~~~k~p~i~~fa~--~~~RE~~W~N-v~  415 (910)
T KOG1539|consen  340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA-KKVNVFSTEKLKLPPIVEFAF--ENAREKEWDN-VI  415 (910)
T ss_pred             eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc-ccccccchhhhcCCcceeeec--ccchhhhhcc-ee
Confidence            9998 67888888887743222222211111000000000000 000000000000000000000  0000001111 56


Q ss_pred             EEeeCCceEEEEeCCCCce-eeeee-----CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-
Q 013578          223 ASCSEGTDISIWHGKTGKL-LGNVD-----TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-  295 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-  295 (440)
                      +..-.+..++.|+.++... ...+.     .....+++++.+++|++.+.|+..|.|.+|++..+-        ....+ 
T Consensus       416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi--------~r~sf~  487 (910)
T KOG1539|consen  416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI--------HRKSFG  487 (910)
T ss_pred             EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe--------eecccc
Confidence            6666777899999987654 22222     234678899999999999999999999999997764        33344 


Q ss_pred             --eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe
Q 013578          296 --KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT  373 (440)
Q Consensus       296 --~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  373 (440)
                        ..|.++|++++...-++.+++++.+|.+++||..+...+..               -.-...+..+.++.....++.+
T Consensus       488 ~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~---------------l~l~~~~~~iv~hr~s~l~a~~  552 (910)
T KOG1539|consen  488 DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS---------------LRLGSSITGIVYHRVSDLLAIA  552 (910)
T ss_pred             cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee---------------eccCCCcceeeeeehhhhhhhh
Confidence              57999999999988888999999999999999986542211               0112235567777776666664


Q ss_pred             -cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          374 -HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       374 -~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                       ++-.|+++|..+.+.++.+ .+|.+.|++++|+|||        ++|++++.|++||+||++++.
T Consensus       553 ~ddf~I~vvD~~t~kvvR~f-~gh~nritd~~FS~Dg--------rWlisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  553 LDDFSIRVVDVVTRKVVREF-WGHGNRITDMTFSPDG--------RWLISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             cCceeEEEEEchhhhhhHHh-hccccceeeeEeCCCC--------cEEEEeecCCcEEEEeccCcc
Confidence             5789999999999999999 5999999999999999        999999999999999999875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.9e-25  Score=168.81  Aligned_cols=230  Identities=21%  Similarity=0.273  Sum_probs=175.6

Q ss_pred             CCCCCCCCCcccCc-------cccccccccCcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578           68 HSHGDKDQNKRHHP-------LDVNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG  138 (440)
Q Consensus        68 ~~~~~~~~~~~~~~-------~~~~~l~~H~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~  138 (440)
                      .++.++|++++++.       .++.+|.||.++|+.++|..  -|.+||++++||.|.||.-..+.   +........|.
T Consensus        26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~---w~k~~e~~~h~  102 (299)
T KOG1332|consen   26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR---WTKAYEHAAHS  102 (299)
T ss_pred             eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc---hhhhhhhhhhc
Confidence            46667777777663       35778999999999999976  79999999999999999987663   22334456788


Q ss_pred             CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      ..|++++|.|.+--+                                                                 
T Consensus       103 ~SVNsV~wapheygl-----------------------------------------------------------------  117 (299)
T KOG1332|consen  103 ASVNSVAWAPHEYGL-----------------------------------------------------------------  117 (299)
T ss_pred             ccceeecccccccce-----------------------------------------------------------------
Confidence            999999999865321                                                                 


Q ss_pred             CeEEEEeeCCceEEEEeCCCC---ceeeeeeCCCCcccEEEecCC---C-----------CeEEEEecCCCEEEEEeEec
Q 013578          219 STIIASCSEGTDISIWHGKTG---KLLGNVDTNQLKNNMAAISPN---G-----------RFLAAAAFTADVKVWEIVYS  281 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~~~~~dg~i~i~d~~~~  281 (440)
                        .|++++.||.|.+.+.++.   ...+....|...+++++|.|-   |           +.|++|+.|..|+||+....
T Consensus       118 --~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~  195 (299)
T KOG1332|consen  118 --LLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD  195 (299)
T ss_pred             --EEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence              6888899999999887654   223445678889999999985   4           67999999999999998654


Q ss_pred             CCCceeeeeeeeeeeccccceEEEEEcCCC----CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578          282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPNS----EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ  357 (440)
Q Consensus       282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (440)
                      .      +.....+.+|.+.|+.++|.|.-    .+|++++.||+|.||..+...... ...        +.  ......
T Consensus       196 ~------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w-k~t--------ll--~~f~~~  258 (299)
T KOG1332|consen  196 S------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW-KKT--------LL--EEFPDV  258 (299)
T ss_pred             c------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc-ccc--------cc--ccCCcc
Confidence            2      23445589999999999999953    479999999999999877321110 000        11  112345


Q ss_pred             eeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578          358 YDRLSLSSDGKILAATH-GSTLQWLSVE  384 (440)
Q Consensus       358 v~~~~~s~~g~~l~~~~-~~~i~i~d~~  384 (440)
                      +.+++||..|.+|+++. |+.+.+|.-.
T Consensus       259 ~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  259 VWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             eEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            78999999999999854 8999999643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=1.1e-23  Score=175.02  Aligned_cols=308  Identities=16%  Similarity=0.225  Sum_probs=207.8

Q ss_pred             ccccccCcceeEEEEccCC--CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCC-CeEEEEeecCC
Q 013578           85 NTLKGHGDSVTGLCFSSDG--KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNA-TSIVVATHNLS  161 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg--~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~~~~  161 (440)
                      ...+-|.++|++++|+|..  +++|+|+.-|.|-+||+.+.+.. ..-.....+|..+|.++.|+|.. ..+++.+.|+ 
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d-~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG-  257 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD-KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG-  257 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-cCceEEeccCCccccceEecCCChhheeeeccCc-
Confidence            4556789999999999954  58899999999999999743322 23455677899999999999965 4566677774 


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                        .+...+.+......-...                ....     ...+.+-++.+.. .++.+..=|...+||++++..
T Consensus       258 --tiR~~D~~~~i~e~v~s~----------------~~d~-----~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s  313 (498)
T KOG4328|consen  258 --TIRLQDFEGNISEEVLSL----------------DTDN-----IWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGS  313 (498)
T ss_pred             --eeeeeeecchhhHHHhhc----------------Cccc-----eeeeeccccCCCc-cEEEeecccceEEEEeecCCc
Confidence              344433333221100000                0000     0111112233444 566666666899999998754


Q ss_pred             -eeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578          242 -LGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       242 -~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                       ...+..|...|..++++|. ..+|++++.|++.+|||++.-.....    +......|...|.+..|||.+..|+|.+.
T Consensus       314 ~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----p~lst~~HrrsV~sAyFSPs~gtl~TT~~  389 (498)
T KOG4328|consen  314 EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----PFLSTLPHRRSVNSAYFSPSGGTLLTTCQ  389 (498)
T ss_pred             cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----cceecccccceeeeeEEcCCCCceEeecc
Confidence             5666778889999999995 57889999999999999986553211    23344569999999999998888999999


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccC
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEG  398 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~  398 (440)
                      |..|+|||..   ++.......  ..++.....+.........|.|+..++++|. -..|-|||...++.+..+......
T Consensus       390 D~~IRv~dss---~~sa~~~p~--~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~  464 (498)
T KOG4328|consen  390 DNEIRVFDSS---CISAKDEPL--GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS  464 (498)
T ss_pred             CCceEEeecc---cccccCCcc--ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc
Confidence            9999999985   111111111  1111112222333455689999999999987 678999999999987776333333


Q ss_pred             CeEEE-EecCCCCCCCCCcce-EEEEeeCCCeEEEEeCC
Q 013578          399 EITCM-AWAPKTIPMGNQQVS-VLATSSVDKKVKLWLAP  435 (440)
Q Consensus       399 ~v~~v-~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw~~~  435 (440)
                      .|.++ .|+|-+        . +++-++..|.|.||.-.
T Consensus       465 tI~~vn~~HP~~--------~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  465 TIPSVNEFHPMR--------DTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             ccccceeecccc--------cceeccCCccceEEEEecC
Confidence            56554 799986        4 44445557888888654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=9.7e-24  Score=183.31  Aligned_cols=236  Identities=17%  Similarity=0.286  Sum_probs=188.5

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccc
Q 013578           94 VTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKA  173 (440)
Q Consensus        94 V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  173 (440)
                      .+-+.|+ ..+.||.|.. ..|.+|+..++...     .....+...|+++.|+++|.                      
T Consensus       180 ~nlldWs-s~n~laValg-~~vylW~~~s~~v~-----~l~~~~~~~vtSv~ws~~G~----------------------  230 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVALG-QSVYLWSASSGSVT-----ELCSFGEELVTSVKWSPDGS----------------------  230 (484)
T ss_pred             hhHhhcc-cCCeEEEEec-ceEEEEecCCCceE-----EeEecCCCceEEEEECCCCC----------------------
Confidence            3456787 4456777653 46999998876522     22222268899999988876                      


Q ss_pred             cccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC-CCCcc
Q 013578          174 ISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT-NQLKN  252 (440)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v  252 (440)
                                                                     +|++|..+|.|.|||..+.+.+..+.. |...|
T Consensus       231 -----------------------------------------------~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rv  263 (484)
T KOG0305|consen  231 -----------------------------------------------HLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRV  263 (484)
T ss_pred             -----------------------------------------------EEEEeecCCeEEEEehhhccccccccCCcCcee
Confidence                                                           677788889999999999999999988 99999


Q ss_pred             cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccc
Q 013578          253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY  332 (440)
Q Consensus       253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~  332 (440)
                      .+++|+  +..+.+|+.++.|..+|++..+.       ....+.+|...|..+.|++|+.+||+|+.|+.+.|||.....
T Consensus       264 g~laW~--~~~lssGsr~~~I~~~dvR~~~~-------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~  334 (484)
T KOG0305|consen  264 GSLAWN--SSVLSSGSRDGKILNHDVRISQH-------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE  334 (484)
T ss_pred             EEEecc--CceEEEecCCCcEEEEEEecchh-------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence            999998  77899999999999999987762       222488999999999999999999999999999999994322


Q ss_pred             cccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec---CCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578          333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH---GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~---~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                                    +......|...|.+++|+|-.. +||+|.   |+.|++||+.+|+.+..+.  -...|..+.|++.
T Consensus       335 --------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~  398 (484)
T KOG0305|consen  335 --------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKK  398 (484)
T ss_pred             --------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCC
Confidence                          2344557788899999999754 777754   8999999999999999875  6678999999998


Q ss_pred             CCCCCCCcceEEEE--eeCCCeEEEEeCCCCC
Q 013578          409 TIPMGNQQVSVLAT--SSVDKKVKLWLAPSLE  438 (440)
Q Consensus       409 ~~~~~~~~~~~l~t--~~~Dg~i~vw~~~~~~  438 (440)
                      .        +-|++  |-.++.|.||++++.+
T Consensus       399 ~--------kEi~sthG~s~n~i~lw~~ps~~  422 (484)
T KOG0305|consen  399 Y--------KELLSTHGYSENQITLWKYPSMK  422 (484)
T ss_pred             C--------CEEEEecCCCCCcEEEEeccccc
Confidence            6        33443  3447899999998754

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.3e-24  Score=190.14  Aligned_cols=189  Identities=18%  Similarity=0.293  Sum_probs=157.6

Q ss_pred             EEEEeeCCceEEEEeCCC---CceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKT---GKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      +|++++..|.|.+||+..   .+.+..+..|...+.++.|++ ..++|++|+.||.|++||++..+        ....+.
T Consensus       102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--------S~~t~~  173 (839)
T KOG0269|consen  102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--------SKSTFR  173 (839)
T ss_pred             hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--------cccccc
Confidence            899999999999999986   556677889999999999998 46889999999999999998876        566677


Q ss_pred             ccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-
Q 013578          297 GHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-  374 (440)
Q Consensus       297 ~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-  374 (440)
                      +....|..+.|+| .+..|+++...|.+++||++....             .......|...|.++.|+|++.+||+|+ 
T Consensus       174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-------------~~~k~~AH~GpV~c~nwhPnr~~lATGGR  240 (839)
T KOG0269|consen  174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-------------CEKKLTAHNGPVLCLNWHPNREWLATGGR  240 (839)
T ss_pred             ccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-------------HHHHhhcccCceEEEeecCCCceeeecCC
Confidence            7888999999999 567899999999999999995432             2334457788899999999999999987 


Q ss_pred             CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC--CCeEEEEeCCCC
Q 013578          375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV--DKKVKLWLAPSL  437 (440)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~--Dg~i~vw~~~~~  437 (440)
                      |+.|+|||..+++.-.........+|.+|.|-|..+       ..|++++.  |-.|+|||++..
T Consensus       241 DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~-------~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  241 DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS-------YHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             CccEEEEeccCCCccceeEEeecceeeeeeeccCcc-------chhhhhhccccceEEEEeeccc
Confidence            999999999877654333223456899999999863       67888775  889999999763

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=9.6e-26  Score=197.24  Aligned_cols=186  Identities=24%  Similarity=0.420  Sum_probs=167.2

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      .+++|+.|..+.+|.+.....+..+.+|..+|.++.|++...+|++|+.+|+|++||+...+        .++++.+|..
T Consensus        42 ~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk--------~vrtLtgh~~  113 (825)
T KOG0267|consen   42 SLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK--------IVRTLTGHLL  113 (825)
T ss_pred             eeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh--------hhhhhhcccc
Confidence            78889999989999988777777899999999999999999999999999999999997665        6788999999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQ  379 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~  379 (440)
                      .+.++.|+|-+.++++|+.|+.+++||++...|.              +...+|...+..+.|+|+|++++.|. |..++
T Consensus       114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~--------------~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS--------------HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             CcceeeeccceEEeccccccccceehhhhccCce--------------eeecCCcceeEEEeecCCCceeeccCCcceee
Confidence            9999999999999999999999999999955442              22334667788999999999999976 69999


Q ss_pred             EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +||...|+....+ ..|++.+..+.|+|..        -++++||.|+++++||+++.
T Consensus       180 i~d~~agk~~~ef-~~~e~~v~sle~hp~e--------~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  180 IWDLTAGKLSKEF-KSHEGKVQSLEFHPLE--------VLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             eeccccccccccc-ccccccccccccCchh--------hhhccCCCCceeeeecccee
Confidence            9999999999999 5899999999999997        78999999999999999854

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.3e-23  Score=174.98  Aligned_cols=234  Identities=15%  Similarity=0.195  Sum_probs=182.2

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE  170 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~  170 (440)
                      .++|.|++-+|+|.+|+.|...|.|.+|.+.++.     ++.....|-..|+++.|+.|+.                   
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-----LL~v~~aHYQ~ITcL~fs~dgs-------------------  136 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-----LLNVLSAHYQSITCLKFSDDGS-------------------  136 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEecccc-----HHHHHHhhccceeEEEEeCCCc-------------------
Confidence            5789999999999999999899999999999986     4455577889999999998876                   


Q ss_pred             ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC---------CCce
Q 013578          171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK---------TGKL  241 (440)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~---------~~~~  241 (440)
                                                                        ++++|+.||.|.+|++.         +-++
T Consensus       137 --------------------------------------------------~iiTgskDg~V~vW~l~~lv~a~~~~~~~p  166 (476)
T KOG0646|consen  137 --------------------------------------------------HIITGSKDGAVLVWLLTDLVSADNDHSVKP  166 (476)
T ss_pred             --------------------------------------------------EEEecCCCccEEEEEEEeecccccCCCccc
Confidence                                                              56666666666666542         3467


Q ss_pred             eeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578          242 LGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      ++.+..|.-+|+.+...+.  ..+|++++.|.++++||+..+.        .+..+. ....+.+++.+|-++.++.|+.
T Consensus       167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--------LLlti~-fp~si~av~lDpae~~~yiGt~  237 (476)
T KOG0646|consen  167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--------LLLTIT-FPSSIKAVALDPAERVVYIGTE  237 (476)
T ss_pred             eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce--------eeEEEe-cCCcceeEEEcccccEEEecCC
Confidence            7888899999999888764  4689999999999999997765        444433 5678999999999999999999


Q ss_pred             CCcEEEEecCccccccC--CCCccccccccccCCCCCee--eeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhc
Q 013578          320 DGTLRVWNINVRYHLDE--DPKTLKVLPIPLLDSNGATL--QYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEK  394 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~  394 (440)
                      +|.|.+.++.+......  ..+.............+|..  .|+|++++-||.+|++|+ ||.++|||+.+.++++++. 
T Consensus       238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~-  316 (476)
T KOG0646|consen  238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ-  316 (476)
T ss_pred             cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh-
Confidence            99999988875432111  00111111122233345554  899999999999999998 9999999999999999984 


Q ss_pred             cccCCeEEEEecCC
Q 013578          395 AHEGEITCMAWAPK  408 (440)
Q Consensus       395 ~h~~~v~~v~~~~~  408 (440)
                      ...++|+.+.+.|-
T Consensus       317 ~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  317 TSKGPVTNLQINPL  330 (476)
T ss_pred             hhccccceeEeecc
Confidence            46788999998554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=3.7e-24  Score=179.89  Aligned_cols=248  Identities=16%  Similarity=0.238  Sum_probs=190.0

Q ss_pred             cCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccc
Q 013578          134 NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY  213 (440)
Q Consensus       134 ~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (440)
                      ...|+.-|.++.++...+++.+++..    .+.+|+...........+          .+...        .......+.
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgGkg----cVKVWdis~pg~k~Pvsq----------Ldcl~--------rdnyiRSck  472 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGGKG----CVKVWDISQPGNKSPVSQ----------LDCLN--------RDNYIRSCK  472 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecCCC----eEEEeeccCCCCCCcccc----------ccccC--------cccceeeeE
Confidence            34677888999999999999998754    788888766522211111          11111        111122233


Q ss_pred             cCCCCCeEEEEeeCCceEEEEeCCCCcee--eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578          214 GTADGSTIIASCSEGTDISIWHGKTGKLL--GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                      ..+||+ .|++|++-.++.|||+......  ..+.........++.+||.+..+++..||.|.|||++...        .
T Consensus       473 L~pdgr-tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--------~  543 (705)
T KOG0639|consen  473 LLPDGR-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--------L  543 (705)
T ss_pred             ecCCCc-eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--------e
Confidence            478998 7888888999999999876543  2333333446678999999999999999999999997655        7


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                      +..++||.+.+.||.++++|..|.||+-|.+||.||++++..+.+..               -...|.++.++|.+.+|+
T Consensus       544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd---------------F~SQIfSLg~cP~~dWla  608 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD---------------FSSQIFSLGYCPTGDWLA  608 (705)
T ss_pred             eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh---------------hhhhheecccCCCcccee
Confidence            89999999999999999999999999999999999999887654322               123477899999999999


Q ss_pred             Eec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          372 ATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       372 ~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +|. ++.+.+......+.. .+ .-|+..|.++.|.+.|        +++++.|.|..+..|+.+-|
T Consensus       609 vGMens~vevlh~skp~ky-ql-hlheScVLSlKFa~cG--------kwfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  609 VGMENSNVEVLHTSKPEKY-QL-HLHESCVLSLKFAYCG--------KWFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             eecccCcEEEEecCCccce-ee-cccccEEEEEEecccC--------ceeeecCchhhhhhccCccc
Confidence            997 677877776544433 33 4599999999999999        89999999999999998755

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.92  E-value=2.8e-22  Score=168.71  Aligned_cols=318  Identities=17%  Similarity=0.220  Sum_probs=216.4

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCC--------cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC-CCeEE
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADG--------VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN-ATSIV  154 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg--------~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~  154 (440)
                      .+.+.||+..|.|++.+||.-.+++|-.-|        .+|+||..+..     .+.........|.+++|++. +..++
T Consensus        97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~-----TL~V~g~f~~GV~~vaFsk~~~G~~l  171 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS-----TLHVIGFFDRGVTCVAFSKINGGSLL  171 (626)
T ss_pred             cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce-----eeeeeccccccceeeeecccCCCceE
Confidence            456789999999999999999999885555        49999966543     22333345578999999974 33444


Q ss_pred             EEeecCCcceEEeeccccccccccccccCC------C------------CCCceeeccccccccee--EE---Eeecccc
Q 013578          155 VATHNLSGCSLYMYGEEKAISTNEGKQQSK------L------------PGPEIKWEHHKVHDKRA--IL---TLFGASA  211 (440)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------------~~~~~~~~~~~~~~~~~--~~---~~~~~~~  211 (440)
                      .+-.++....+.+|+-.+.....+.+...+      +            .+....|......-.+.  +.   ......+
T Consensus       172 ~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~  251 (626)
T KOG2106|consen  172 CAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLC  251 (626)
T ss_pred             EEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEE
Confidence            444555556666666554433222221100      0            01112232211100000  00   0012334


Q ss_pred             cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCc------
Q 013578          212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGL------  285 (440)
Q Consensus       212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~------  285 (440)
                      +.|.++|+  +++|..+|.|.||+..+.+..+....|.+.|.+++.-.+|.+|- |+.|.+|..||-...+...      
T Consensus       252 v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~  328 (626)
T KOG2106|consen  252 VTFLENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQ  328 (626)
T ss_pred             EEEcCCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchh
Confidence            55677776  89999999999999988888777779999999999999998765 9999999999932221000      


Q ss_pred             ---ee-----------------------eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578          286 ---VK-----------------------AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK  339 (440)
Q Consensus       286 ---~~-----------------------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  339 (440)
                         .+                       +-.......+|....+.++.+|+..+++|++.|+.+++|+-.  +..     
T Consensus       329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~--k~~-----  401 (626)
T KOG2106|consen  329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH--KLE-----  401 (626)
T ss_pred             cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC--cee-----
Confidence               00                       001123345788899999999999999999999999999922  110     


Q ss_pred             ccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce
Q 013578          340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS  418 (440)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~  418 (440)
                      -.+          .-..++.++.|+|.| .+|.|. .|...+.|.++...+..- . ...++++|+|+|+|        .
T Consensus       402 wt~----------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~-~-d~~~ls~v~ysp~G--------~  460 (626)
T KOG2106|consen  402 WTK----------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH-T-DNEQLSVVRYSPDG--------A  460 (626)
T ss_pred             EEE----------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE-e-cCCceEEEEEcCCC--------C
Confidence            001          112346689999999 777776 899999999995555443 2 37899999999999        8


Q ss_pred             EEEEeeCCCeEEEEeCCCC
Q 013578          419 VLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       419 ~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +||.|+.|+.|.||.+...
T Consensus       461 ~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  461 FLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EEEEecCCCeEEEEEECCC
Confidence            9999999999999998754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.7e-22  Score=160.23  Aligned_cols=185  Identities=20%  Similarity=0.253  Sum_probs=157.9

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC--eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR--FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      ++++|+.|-+|+|||++....+..+-.|.+.|+++.|.++-.  .|++|+.||.|.+|+.        ..+.++..+++|
T Consensus        55 ~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~--------~~W~~~~slK~H  126 (362)
T KOG0294|consen   55 YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV--------GSWELLKSLKAH  126 (362)
T ss_pred             eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc--------CCeEEeeeeccc
Confidence            899999999999999999999999999999999999998765  8999999999999998        445589999999


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEE
Q 013578          299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTL  378 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i  378 (440)
                      .+.|+.++.+|.+++-++.+.|+.+++||+-.++.-       ....+      .+.  -+.+.|+|.|.+++.+..+.|
T Consensus       127 ~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a-------~v~~L------~~~--at~v~w~~~Gd~F~v~~~~~i  191 (362)
T KOG0294|consen  127 KGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA-------FVLNL------KNK--ATLVSWSPQGDHFVVSGRNKI  191 (362)
T ss_pred             ccccceeEecCCCceEEEEcCCceeeeehhhcCccc-------eeecc------CCc--ceeeEEcCCCCEEEEEeccEE
Confidence            999999999999999999999999999999765421       11110      111  123999999999999999999


Q ss_pred             EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      -+|.+.+......+.  ....+.++.|...         ..|++|++|+.|++||.+...+
T Consensus       192 ~i~q~d~A~v~~~i~--~~~r~l~~~~l~~---------~~L~vG~d~~~i~~~D~ds~~~  241 (362)
T KOG0294|consen  192 DIYQLDNASVFREIE--NPKRILCATFLDG---------SELLVGGDNEWISLKDTDSDTP  241 (362)
T ss_pred             EEEecccHhHhhhhh--ccccceeeeecCC---------ceEEEecCCceEEEeccCCCcc
Confidence            999999999888875  3467888989877         4899999999999999986543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.1e-24  Score=168.59  Aligned_cols=195  Identities=18%  Similarity=0.302  Sum_probs=165.1

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEe------Eec-------------
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI------VYS-------------  281 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~------~~~-------------  281 (440)
                      ++.+++.|.+.++|.++++.++.++.+|.+.|+++.|++.+.++++++.|++-+||..      ...             
T Consensus       162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e  241 (481)
T KOG0300|consen  162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE  241 (481)
T ss_pred             ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence            7888999999999999999999999999999999999999999999999999999972      110             


Q ss_pred             --------------CCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccccc
Q 013578          282 --------------KDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIP  347 (440)
Q Consensus       282 --------------~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  347 (440)
                                    .++. .-..++..+.+|.+.|.+..|-..|+.+++++.|.+..+||++++..+             
T Consensus       242 ~sDe~~~d~d~~~~sD~~-tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v-------------  307 (481)
T KOG0300|consen  242 HSDEHNRDTDSSEKSDGH-TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV-------------  307 (481)
T ss_pred             cccccccccccccccCCc-eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee-------------
Confidence                          0000 112357788999999999999999999999999999999999987543             


Q ss_pred             ccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578          348 LLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD  426 (440)
Q Consensus       348 ~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D  426 (440)
                       ....+|....+.++-+|..+++++++ |.+.++||++..-.-....++|.+.|+++.|..+         ..+++|++|
T Consensus       308 -~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d---------d~vVSgSDD  377 (481)
T KOG0300|consen  308 -NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD---------DRVVSGSDD  377 (481)
T ss_pred             -ccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC---------CceeecCCC
Confidence             33457777788899999999999877 8999999998554433334799999999999998         489999999


Q ss_pred             CeEEEEeCCCCCC
Q 013578          427 KKVKLWLAPSLES  439 (440)
Q Consensus       427 g~i~vw~~~~~~~  439 (440)
                      .+|+|||+.+..+
T Consensus       378 rTvKvWdLrNMRs  390 (481)
T KOG0300|consen  378 RTVKVWDLRNMRS  390 (481)
T ss_pred             ceEEEeeeccccC
Confidence            9999999998754

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=2.6e-22  Score=160.03  Aligned_cols=273  Identities=15%  Similarity=0.244  Sum_probs=188.0

Q ss_pred             cCccccccccccCcceeEEEEcc-----CCCEEEEeeCCCcEEEEecCCCCCcceeeEEec--CCCCCCCceEEEccCCC
Q 013578           79 HHPLDVNTLKGHGDSVTGLCFSS-----DGKCLATACADGVIRVHKLDDASSKSFKFLRIN--LPPGGPPTAVAFADNAT  151 (440)
Q Consensus        79 ~~~~~~~~l~~H~~~V~~l~~s~-----dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~  151 (440)
                      .....-+..+.|..+|..++|++     +-..+||.|.+ .+.+|+.......  ..++..  ..+......++|+-+  
T Consensus        26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i--r~lq~y~D~d~~Esfytcsw~yd--  100 (385)
T KOG1034|consen   26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI--RLLQSYADEDHDESFYTCSWSYD--  100 (385)
T ss_pred             ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce--eeeeeccCCCCCcceEEEEEEec--
Confidence            33344566778999999999985     23467776655 6888887654311  112111  112233333333322  


Q ss_pred             eEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceE
Q 013578          152 SIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDI  231 (440)
Q Consensus       152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  231 (440)
                                                                                     ..++..+++.++.-|.|
T Consensus       101 ---------------------------------------------------------------~~~~~p~la~~G~~GvI  117 (385)
T KOG1034|consen  101 ---------------------------------------------------------------SNTGNPFLAAGGYLGVI  117 (385)
T ss_pred             ---------------------------------------------------------------CCCCCeeEEeecceeEE
Confidence                                                                           22344488999999999


Q ss_pred             EEEeCCCCceeeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeee---eeccccceEEEEE
Q 013578          232 SIWHGKTGKLLGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ---LKGHKSAVTWLCF  307 (440)
Q Consensus       232 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~  307 (440)
                      +|.|+.++++...+.+|...|+.+.+.|+ .+++++++.|..|++|++++..        ++..   +.+|.+.|.++.|
T Consensus       118 rVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--------Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  118 RVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--------CVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             EEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--------EEEEecccccccCcEEEEEE
Confidence            99999999999999999999999999996 4799999999999999997765        5554   4579999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCccccccC---------------CCC---ccccc-------------------------
Q 013578          308 APNSEQIITASKDGTLRVWNINVRYHLDE---------------DPK---TLKVL-------------------------  344 (440)
Q Consensus       308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------~~~---~~~~~-------------------------  344 (440)
                      +++|.+|++++.|.++++|++...+-...               .+.   ....+                         
T Consensus       190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSksc  269 (385)
T KOG1034|consen  190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSC  269 (385)
T ss_pred             cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeeccc
Confidence            99999999999999999999983221100               000   00000                         


Q ss_pred             --------c----ccc---------------cCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccc
Q 013578          345 --------P----IPL---------------LDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAH  396 (440)
Q Consensus       345 --------~----~~~---------------~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h  396 (440)
                              +    ...               ..........-..+|.|-+++||.|. .|.+++||++..+......-.|
T Consensus       270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~  349 (385)
T KOG1034|consen  270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH  349 (385)
T ss_pred             CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence                    0    000               00000011122345666788888876 7999999998877642221112


Q ss_pred             ---cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          397 ---EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       397 ---~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                         ...|...+|+.|+        .+|+...+|++|.-||.-
T Consensus       350 s~~~~tVRQ~sfS~dg--------s~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  350 SKSGSTVRQTSFSRDG--------SILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ccccceeeeeeecccC--------cEEEEEeCCCcEEEEEee
Confidence               3479999999999        899999999999999864

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=4e-23  Score=162.25  Aligned_cols=235  Identities=20%  Similarity=0.304  Sum_probs=166.0

Q ss_pred             CCCCCCCceEEEcc-CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccc
Q 013578          135 LPPGGPPTAVAFAD-NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY  213 (440)
Q Consensus       135 ~~~~~~v~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (440)
                      .+|++.|.++...+ .|+++++++.|   ..+.+|+.++.............. ..+.-.....|..       +.....
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgad---gsi~v~Dl~n~t~~e~s~li~k~~-c~v~~~h~~~Hky-------~iss~~  108 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGAD---GSIAVFDLQNATDYEASGLIAKHK-CIVAKQHENGHKY-------AISSAI  108 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCC---ccEEEEEeccccchhhccceehee-eeccccCCcccee-------eeeeeE
Confidence            35778899999887 47788888777   466666665543211111110000 0001111222222       222222


Q ss_pred             cCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC---CCeEEEEecCCCEEEEEeEecCCCceeeee
Q 013578          214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN---GRFLAAAAFTADVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  290 (440)
                      +.|-+..++.+++-|.++++||..+-+....+.. ++.|..-+++|-   .-++|+|..+-+|++.|+..+.        
T Consensus       109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs--------  179 (397)
T KOG4283|consen  109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS--------  179 (397)
T ss_pred             EeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--------
Confidence            3444444999999999999999999888777765 456777788873   4578899999999999998876        


Q ss_pred             eeeeeeccccceEEEEEcCCCCE-EEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQ-IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI  369 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  369 (440)
                      ..+.+.||.+.|.++.|+|...+ |++|+.||.|++||++..                                      
T Consensus       180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra--------------------------------------  221 (397)
T KOG4283|consen  180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA--------------------------------------  221 (397)
T ss_pred             ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc--------------------------------------
Confidence            88999999999999999998876 689999999999999832                                      


Q ss_pred             EEEecCCEEEEEEcCCccchhhh--hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCCC
Q 013578          370 LAATHGSTLQWLSVETGKVLDTA--EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLESS  440 (440)
Q Consensus       370 l~~~~~~~i~i~d~~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~~  440 (440)
                           .|.+++.|...++....+  ..+|.+.|+.++|..++        .++++++.|..+++|+..+|+.+
T Consensus       222 -----sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~--------~~l~~~gtd~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  222 -----SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA--------RYLASCGTDDRIRVWNMESGRNT  281 (397)
T ss_pred             -----cceeEEeecccCccCccccccccccceeeeeeecccc--------hhhhhccCccceEEeecccCccc
Confidence                 122334444443322222  25799999999999999        89999999999999999998764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.5e-22  Score=159.59  Aligned_cols=251  Identities=16%  Similarity=0.215  Sum_probs=184.3

Q ss_pred             CCCCCCCCCCcccCcccc------ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCC
Q 013578           67 SHSHGDKDQNKRHHPLDV------NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP  140 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~------~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~  140 (440)
                      ..+.++-|+++|.|...-      +....|.++|.+++|+.||..+++|+.|+.+++||+.+++.      .....|.++
T Consensus        42 ~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~------~~v~~Hd~p  115 (347)
T KOG0647|consen   42 LLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV------SQVAAHDAP  115 (347)
T ss_pred             eEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe------eeeeecccc
Confidence            344778899999887643      45567999999999999999999999999999999998853      334568899


Q ss_pred             CceEEEccCCC--eEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          141 PTAVAFADNAT--SIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       141 v~~v~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      |..+.|.+...  .|++++.|   ..+..|+..........      ..++..+...                     --
T Consensus       116 vkt~~wv~~~~~~cl~TGSWD---KTlKfWD~R~~~pv~t~------~LPeRvYa~D---------------------v~  165 (347)
T KOG0647|consen  116 VKTCHWVPGMNYQCLVTGSWD---KTLKFWDTRSSNPVATL------QLPERVYAAD---------------------VL  165 (347)
T ss_pred             eeEEEEecCCCcceeEecccc---cceeecccCCCCeeeee------eccceeeehh---------------------cc
Confidence            99999998766  78888888   67888887654322211      1122222111                     11


Q ss_pred             CeEEEEeeCCceEEEEeCCCCceeee-e-eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          219 STIIASCSEGTDISIWHGKTGKLLGN-V-DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      ..+++.+..++.|.+|+++++..... . ..-.-.++|++..++....+.|+-+|.+-|..++.+...      .-..++
T Consensus       166 ~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~------~nFtFk  239 (347)
T KOG0647|consen  166 YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK------DNFTFK  239 (347)
T ss_pred             CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc------CceeEE
Confidence            12778888889999999986643211 1 122345789999999888899999999999998765321      233444


Q ss_pred             ccc---------cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578          297 GHK---------SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       297 ~h~---------~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  367 (440)
                      .|.         -.|++|+|+|.-..|+|.+.||++.+||-..+..+.              ....+..+|++.+|+.+|
T Consensus       240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk--------------~s~~~~qpItcc~fn~~G  305 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK--------------TSETHPQPITCCSFNRNG  305 (347)
T ss_pred             EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh--------------ccCcCCCccceeEecCCC
Confidence            454         257899999998899999999999999988655432              223445668999999999


Q ss_pred             CEEEEe
Q 013578          368 KILAAT  373 (440)
Q Consensus       368 ~~l~~~  373 (440)
                      .++|-+
T Consensus       306 ~ifaYA  311 (347)
T KOG0647|consen  306 SIFAYA  311 (347)
T ss_pred             CEEEEE
Confidence            988864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=8.6e-24  Score=178.18  Aligned_cols=207  Identities=20%  Similarity=0.295  Sum_probs=153.9

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCc----eeeee-eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce---
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGK----LLGNV-DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV---  286 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~---  286 (440)
                      .|.|. .|++|+.|.+|++||+.-..    ..+.+ ......|.+++|++.|..|++.+.....+|+|-....-...   
T Consensus       176 Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG  254 (641)
T KOG0772|consen  176 DPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKG  254 (641)
T ss_pred             cCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeecc
Confidence            34555 89999999999999986432    11222 23455789999999999999999999999999532210000   


Q ss_pred             -eeeeeeeeeeccccceEEEEEcCCC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578          287 -KAVTSVMQLKGHKSAVTWLCFAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS  364 (440)
Q Consensus       287 -~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  364 (440)
                       ........-+||...++|-+|+|+. ..|+|++.||++||||++..+...      ..+.  .....+....++.++|+
T Consensus       255 DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~------qVik--~k~~~g~Rv~~tsC~~n  326 (641)
T KOG0772|consen  255 DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL------QVIK--TKPAGGKRVPVTSCAWN  326 (641)
T ss_pred             chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe------eEEe--eccCCCcccCceeeecC
Confidence             1112344567899999999999965 468999999999999998654221      1111  12223556678899999


Q ss_pred             CCCCEEEEec-CCEEEEEEcCCcc--chhhhhccccC--CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          365 SDGKILAATH-GSTLQWLSVETGK--VLDTAEKAHEG--EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       365 ~~g~~l~~~~-~~~i~i~d~~~~~--~~~~~~~~h~~--~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +||+++|+|. ||.|.+|+..+..  ....+..+|..  .|+||.|+++|        ++|++-|.|+++++||+++.+
T Consensus       327 rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg--------~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  327 RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG--------NYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc--------chhhhccCCCceeeeeccccc
Confidence            9999999865 9999999975443  33344467887  89999999999        999999999999999998764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=5.7e-22  Score=166.86  Aligned_cols=317  Identities=16%  Similarity=0.212  Sum_probs=213.9

Q ss_pred             CCCCCCCCcccCccc----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcce----------------
Q 013578           69 SHGDKDQNKRHHPLD----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSF----------------  128 (440)
Q Consensus        69 ~~~~~~~~~~~~~~~----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~----------------  128 (440)
                      .++++++..-+|...    .+...+|.+.|.+++.--+|.+| +|+.|..|..||-+-......                
T Consensus       261 iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~  339 (626)
T KOG2106|consen  261 ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGK  339 (626)
T ss_pred             EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCC
Confidence            466777887777653    23344899999999999999654 599999999999321110000                


Q ss_pred             -------------------eeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCc
Q 013578          129 -------------------KFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPE  189 (440)
Q Consensus       129 -------------------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (440)
                                         .+.....+|......++.+|+...+++++.+   ..+.+|+..+.                
T Consensus       340 ~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd---k~v~lW~~~k~----------------  400 (626)
T KOG2106|consen  340 GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD---KHVRLWNDHKL----------------  400 (626)
T ss_pred             CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc---ceEEEccCCce----------------
Confidence                               0011123445556666666666666666665   45555552222                


Q ss_pred             eeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec
Q 013578          190 IKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF  269 (440)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  269 (440)
                       .|..         .......+.-+.|.|  .++.|...|...+.|.++...+..-.. ..++++++|+|+|.+||+|+.
T Consensus       401 -~wt~---------~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~  467 (626)
T KOG2106|consen  401 -EWTK---------IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSH  467 (626)
T ss_pred             -eEEE---------EecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecC
Confidence             1211         111223344456666  799999999999999998655544444 889999999999999999999


Q ss_pred             CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc----
Q 013578          270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP----  345 (440)
Q Consensus       270 dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----  345 (440)
                      |+.|+||.+....    ..+..+....+  .+|+.+.|++|+++|.+-+.|-.|..|........ ...+..+-..    
T Consensus       468 d~~iyiy~Vs~~g----~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~-ts~kDvkW~t~~c~  540 (626)
T KOG2106|consen  468 DNHIYIYRVSANG----RKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI-TSVKDVKWATYTCT  540 (626)
T ss_pred             CCeEEEEEECCCC----cEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCccc-ceecceeeeeeEEE
Confidence            9999999997655    22333333333  89999999999999999999999999943322211 1111110000    


Q ss_pred             cc-ccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc---chhhhhccccCCeEEEEecCCCCCCCCCcceEE
Q 013578          346 IP-LLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK---VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL  420 (440)
Q Consensus       346 ~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l  420 (440)
                      +- ......+...+..++-+.+.+++|+|+ .|.|++|...--+   ....+ .+|.+.|++++|.-+.        ..|
T Consensus       541 lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~-~ghs~~vt~V~Fl~~d--------~~l  611 (626)
T KOG2106|consen  541 LGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEY-GGHSSHVTNVAFLCKD--------SHL  611 (626)
T ss_pred             EEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceee-ccccceeEEEEEeeCC--------ceE
Confidence            00 001133444567788888899999998 5899999754322   23344 6899999999999876        788


Q ss_pred             EEeeCCCeEEEEeC
Q 013578          421 ATSSVDKKVKLWLA  434 (440)
Q Consensus       421 ~t~~~Dg~i~vw~~  434 (440)
                      ++.+.|..|..|++
T Consensus       612 i~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  612 ISTGKDTSIMQWRL  625 (626)
T ss_pred             EecCCCceEEEEEe
Confidence            88889999999987

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=3.9e-22  Score=161.90  Aligned_cols=267  Identities=16%  Similarity=0.229  Sum_probs=175.3

Q ss_pred             ccccccccccCcceeEEEEccCC--CEEEEeeCCCcEEEEecCCCC-----------CcceeeEEecCCCCCCCceEEEc
Q 013578           81 PLDVNTLKGHGDSVTGLCFSSDG--KCLATACADGVIRVHKLDDAS-----------SKSFKFLRINLPPGGPPTAVAFA  147 (440)
Q Consensus        81 ~~~~~~l~~H~~~V~~l~~s~dg--~~l~t~s~dg~v~vW~~~~~~-----------~~~~~~~~~~~~~~~~v~~v~~~  147 (440)
                      |..-....+|.+.|+.+..++-|  .+.|+=+..|.|.||++....           ......+....+|...=+.++|+
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS  220 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS  220 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence            33334455799999999988855  466666889999999985421           01223344556777888999999


Q ss_pred             cCCCe-EEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee
Q 013578          148 DNATS-IVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS  226 (440)
Q Consensus       148 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  226 (440)
                      |-..- |+++..   ...+++|..............             .+|.       .......++|..+..|++|+
T Consensus       221 p~~~g~LlsGDc---~~~I~lw~~~~g~W~vd~~Pf-------------~gH~-------~SVEDLqWSptE~~vfaScS  277 (440)
T KOG0302|consen  221 PIKTGRLLSGDC---VKGIHLWEPSTGSWKVDQRPF-------------TGHT-------KSVEDLQWSPTEDGVFASCS  277 (440)
T ss_pred             cccccccccCcc---ccceEeeeeccCceeecCccc-------------cccc-------cchhhhccCCccCceEEeee
Confidence            94333 333322   234556554443211111110             0111       11222344777777999999


Q ss_pred             CCceEEEEeCCCC---ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578          227 EGTDISIWHGKTG---KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT  303 (440)
Q Consensus       227 ~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~  303 (440)
                      .|++|+|||++.+   .++.. +.|...|+.+.|+.+..+||+|+.||+++|||++.-+.+     .++..++-|..+|+
T Consensus       278 ~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-----~pVA~fk~Hk~pIt  351 (440)
T KOG0302|consen  278 CDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-----QPVATFKYHKAPIT  351 (440)
T ss_pred             cCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-----CcceeEEeccCCee
Confidence            9999999999987   33333 788999999999999889999999999999999877644     36888999999999


Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEecCcccccc----CCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEE-ecCC
Q 013578          304 WLCFAPNS-EQIITASKDGTLRVWNINVRYHLD----EDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAA-THGS  376 (440)
Q Consensus       304 ~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~-~~~~  376 (440)
                      +|.|+|.. ..|++++.|.+|.+||+.......    +.......++..+....-....+..+.|++.-. ++++ +.+|
T Consensus       352 sieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  352 SIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             EEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence            99999954 568888899999999997543211    111111222222222222344577889998755 4444 3344

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=3.2e-22  Score=159.19  Aligned_cols=284  Identities=17%  Similarity=0.198  Sum_probs=187.9

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc--------ceeeEEecCCCCCCCceEEEc-------cCCCeEEEEe
Q 013578           93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSK--------SFKFLRINLPPGGPPTAVAFA-------DNATSIVVAT  157 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~--------~~~~~~~~~~~~~~v~~v~~~-------~~~~~l~~~~  157 (440)
                      -...+.|+|||..|++-+.|..+++|++......        ...........+..|...+|-       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            3456899999999999999999999998643211        011112223334556666665       4555555555


Q ss_pred             ecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC-
Q 013578          158 HNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG-  236 (440)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~-  236 (440)
                      .+   .-|.+|+.-......+.                  +.........+..+..|+|||. .|++| ....|+++|+ 
T Consensus       131 r~---~PIh~wdaftG~lraSy------------------~~ydh~de~taAhsL~Fs~DGe-qlfaG-ykrcirvFdt~  187 (406)
T KOG2919|consen  131 RD---QPIHLWDAFTGKLRASY------------------RAYDHQDEYTAAHSLQFSPDGE-QLFAG-YKRCIRVFDTS  187 (406)
T ss_pred             cc---Cceeeeeccccccccch------------------hhhhhHHhhhhheeEEecCCCC-eEeec-ccceEEEeecc
Confidence            54   34444444333111110                  0111112223445567799999 55554 5567999998 


Q ss_pred             CCCceeeee-------eCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc
Q 013578          237 KTGKLLGNV-------DTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA  308 (440)
Q Consensus       237 ~~~~~~~~~-------~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (440)
                      +.|..-..+       .+..+-+.|++|+|. .+.+++|+....+-||.-....        ++..+.+|.+.|+.+.|.
T Consensus       188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--------pl~llggh~gGvThL~~~  259 (406)
T KOG2919|consen  188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--------PLQLLGGHGGGVTHLQWC  259 (406)
T ss_pred             CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC--------ceeeecccCCCeeeEEec
Confidence            455321111       123456788999995 5599999998888888765444        677888999999999999


Q ss_pred             CCCCEEEEEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC-
Q 013578          309 PNSEQIITASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET-  385 (440)
Q Consensus       309 p~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~-  385 (440)
                      ++|+.|++|++ |..|..||++.....-      .  .  +....+....---....|++++|++|+ +|.|++||+++ 
T Consensus       260 edGn~lfsGaRk~dkIl~WDiR~~~~pv------~--~--L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  260 EDGNKLFSGARKDDKILCWDIRYSRDPV------Y--A--LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL  329 (406)
T ss_pred             cCcCeecccccCCCeEEEEeehhccchh------h--h--hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence            99999999985 7789999998543210      0  0  001111111111356678999999995 99999999998 


Q ss_pred             ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578          386 GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD  426 (440)
Q Consensus       386 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D  426 (440)
                      |..+..+ ..|...|+.++++|--        .+++|++..
T Consensus       330 gn~~sv~-~~~sd~vNgvslnP~m--------pilatssGq  361 (406)
T KOG2919|consen  330 GNEVSVT-GNYSDTVNGVSLNPIM--------PILATSSGQ  361 (406)
T ss_pred             CCccccc-ccccccccceecCccc--------ceeeeccCc
Confidence            6666666 5899999999999987        688887753

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=4.9e-22  Score=162.83  Aligned_cols=262  Identities=19%  Similarity=0.236  Sum_probs=186.9

Q ss_pred             CcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCc----ceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           91 GDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSK----SFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        91 ~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~----~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      ..+|..+.|.++.. .|+||+.|..|++|.+......    ..........|...|+.+.|+|+|..+++++.       
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D-------   85 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD-------   85 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC-------
Confidence            46899999998766 9999999999999998765433    34455566778899999999998876555544       


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC--------
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK--------  237 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~--------  237 (440)
                                                                                    +|.|.+|...        
T Consensus        86 --------------------------------------------------------------~g~v~lWk~~~~~~~~~d  103 (434)
T KOG1009|consen   86 --------------------------------------------------------------GGEVFLWKQGDVRIFDAD  103 (434)
T ss_pred             --------------------------------------------------------------CceEEEEEecCcCCcccc
Confidence                                                                          4444444322        


Q ss_pred             C--------CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578          238 T--------GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP  309 (440)
Q Consensus       238 ~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  309 (440)
                      +        ....+.+.+|...+..++|+|+++++++++.|..+++||+..+.        ....+..|...|..++|.|
T Consensus       104 ~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~--------l~~~~~dh~~yvqgvawDp  175 (434)
T KOG1009|consen  104 TEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ--------LLAILDDHEHYVQGVAWDP  175 (434)
T ss_pred             chhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce--------eEeeccccccccceeecch
Confidence            1        22345566788899999999999999999999999999998876        7788889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCccccccCCC--------------Ccc----------------------------------
Q 013578          310 NSEQIITASKDGTLRVWNINVRYHLDEDP--------------KTL----------------------------------  341 (440)
Q Consensus       310 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~----------------------------------  341 (440)
                      -++++++-+.|...+.+.+..........              ...                                  
T Consensus       176 l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g  255 (434)
T KOG1009|consen  176 LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVG  255 (434)
T ss_pred             hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeC
Confidence            99999998888866666554222111000              000                                  


Q ss_pred             -------------ccccccccCCCCCeeeeeeEEeCC------------------CCCEEEEecCCEEEEEEcCCccchh
Q 013578          342 -------------KVLPIPLLDSNGATLQYDRLSLSS------------------DGKILAATHGSTLQWLSVETGKVLD  390 (440)
Q Consensus       342 -------------~~~~~~~~~~~~~~~~v~~~~~s~------------------~g~~l~~~~~~~i~i~d~~~~~~~~  390 (440)
                                   +.+..|.....+.......+.|+|                  -+..+|.+..+.|++||.++.+++.
T Consensus       256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~  335 (434)
T KOG1009|consen  256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLA  335 (434)
T ss_pred             CceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceE
Confidence                         000001111111112222333332                  2234556677889999999988888


Q ss_pred             hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ....-|-..|++++|+++|        ..|+..|.||.+.+-.++..
T Consensus       336 ~v~nihy~~iTDiaws~dg--------~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  336 VVDNIHYSAITDIAWSDDG--------SVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             EEeeeeeeeecceeecCCC--------cEEEEeccCCceEEEEEcch
Confidence            7777799999999999999        89999999999887666543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2.1e-21  Score=153.62  Aligned_cols=244  Identities=14%  Similarity=0.187  Sum_probs=174.0

Q ss_pred             ecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccc
Q 013578          133 INLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASAT  212 (440)
Q Consensus       133 ~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (440)
                      ...+....|.++.|+|.+..|++++.|   ..+.+|+..........+                 +........      
T Consensus         8 l~npP~d~IS~v~f~~~~~~LLvssWD---gslrlYdv~~~~l~~~~~-----------------~~~plL~c~------   61 (323)
T KOG1036|consen    8 LENPPEDGISSVKFSPSSSDLLVSSWD---GSLRLYDVPANSLKLKFK-----------------HGAPLLDCA------   61 (323)
T ss_pred             cCCCChhceeeEEEcCcCCcEEEEecc---CcEEEEeccchhhhhhee-----------------cCCceeeee------
Confidence            344556889999999999999999988   456666654431111111                 111111111      


Q ss_pred             ccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578          213 YGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       213 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                        +.+.. .+++|+-||.|+.+|+.++.. ..+..|...+.|+.+++....+++|+.|++|++||.+...        ..
T Consensus        62 --F~d~~-~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~--------~~  129 (323)
T KOG1036|consen   62 --FADES-TIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV--------VV  129 (323)
T ss_pred             --ccCCc-eEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc--------cc
Confidence              23333 799999999999999998765 4456788999999999999999999999999999987532        22


Q ss_pred             eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                      ..+. ....|.++..  .|..|+.|+.|..|.+||+++.....+            .....-...+.++++-|++.-.++
T Consensus       130 ~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q------------~reS~lkyqtR~v~~~pn~eGy~~  194 (323)
T KOG1036|consen  130 GTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQ------------RRESSLKYQTRCVALVPNGEGYVV  194 (323)
T ss_pred             cccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhh------------hccccceeEEEEEEEecCCCceEE
Confidence            2332 2347888877  577899999999999999997644321            111233566889999998875555


Q ss_pred             ec-CCEEEEEEcCCccc----hhhhhcccc---------CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          373 TH-GSTLQWLSVETGKV----LDTAEKAHE---------GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       373 ~~-~~~i~i~d~~~~~~----~~~~~~~h~---------~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ++ +|.|.+=.++..+.    ...+ +.|.         -+|++|+|+|-.        ..|+|||.||.|.+||+.+.+
T Consensus       195 sSieGRVavE~~d~s~~~~skkyaF-kCHr~~~~~~~~~yPVNai~Fhp~~--------~tfaTgGsDG~V~~Wd~~~rK  265 (323)
T KOG1036|consen  195 SSIEGRVAVEYFDDSEEAQSKKYAF-KCHRLSEKDTEIIYPVNAIAFHPIH--------GTFATGGSDGIVNIWDLFNRK  265 (323)
T ss_pred             EeecceEEEEccCCchHHhhhceeE-EeeecccCCceEEEEeceeEecccc--------ceEEecCCCceEEEccCcchh
Confidence            55 99988766655422    2223 3443         279999999986        789999999999999997654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=6e-22  Score=164.16  Aligned_cols=191  Identities=17%  Similarity=0.259  Sum_probs=148.3

Q ss_pred             CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      -+.+|++|+.|.+|++||+.++++...+..|...|.++.|+| ...+|++|+.|+++.+.|+|....       .-..+ 
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-------s~~~w-  326 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-------SGKEW-  326 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-------cCceE-
Confidence            344899999999999999999999999999999999999999 468999999999999999985321       11112 


Q ss_pred             ccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE-EEEe-
Q 013578          297 GHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI-LAAT-  373 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~-  373 (440)
                      ...+.|-.++|.|... .++++..||+|+-+|+|...             .++.....|...|.++++++.-.. |+++ 
T Consensus       327 k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-------------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s  393 (463)
T KOG0270|consen  327 KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-------------KPVWTLKAHDDEISGLSVNIQTPGLLSTAS  393 (463)
T ss_pred             EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC-------------CceeEEEeccCCcceEEecCCCCcceeecc
Confidence            2457899999999665 56778899999999999642             134455677788999999998774 4444 


Q ss_pred             cCCEEEEEEcCCccchhhhhcccc---CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          374 HGSTLQWLSVETGKVLDTAEKAHE---GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       374 ~~~~i~i~d~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .++.+++|++.........  .|.   +...|+++.|+.+       ..|+.||..+.++|||+.+..
T Consensus       394 ~d~~Vklw~~~~~~~~~v~--~~~~~~~rl~c~~~~~~~a-------~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  394 TDKVVKLWKFDVDSPKSVK--EHSFKLGRLHCFALDPDVA-------FTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             ccceEEEEeecCCCCcccc--cccccccceeecccCCCcc-------eEEEecCccceEEEeecccCh
Confidence            4899999998655442221  222   3467778888753       689999999999999997754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=8.7e-21  Score=165.42  Aligned_cols=264  Identities=18%  Similarity=0.183  Sum_probs=174.6

Q ss_pred             cccccccCcceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      +..+.+|. .+.+++|+|+|+.+ ++++.|+.|++||..+++.     ..... ....+..++|+|+++.+++++.+  .
T Consensus        24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----~~~~~-~~~~~~~~~~~~~g~~l~~~~~~--~   94 (300)
T TIGR03866        24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-----IGTLP-SGPDPELFALHPNGKILYIANED--D   94 (300)
T ss_pred             EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----EEecc-CCCCccEEEECCCCCEEEEEcCC--C
Confidence            45566554 47889999999876 5677899999999987542     12111 22346789999999988776543  2


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC-ceEEEEeCCCCce
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG-TDISIWHGKTGKL  241 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~vwd~~~~~~  241 (440)
                      ..+.+|+.........                        +........+.++|++. +++++..+ ..+.+||..+++.
T Consensus        95 ~~l~~~d~~~~~~~~~------------------------~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~  149 (300)
T TIGR03866        95 NLVTVIDIETRKVLAE------------------------IPVGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEI  149 (300)
T ss_pred             CeEEEEECCCCeEEeE------------------------eeCCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeE
Confidence            3677776543211000                        00001122345578888 56666555 4577889988877


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeec-----c--ccceEEEEEcCCCCE
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKG-----H--KSAVTWLCFAPNSEQ  313 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----h--~~~v~~~~~~p~~~~  313 (440)
                      ...+... ....+++|++++++|++++ .++.|++||+..++        .+..+..     +  ......++|+|++++
T Consensus       150 ~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~  220 (300)
T TIGR03866       150 VDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK--------VIKKITFEIPGVHPEAVQPVGIKLTKDGKT  220 (300)
T ss_pred             EEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce--------eeeeeeecccccccccCCccceEECCCCCE
Confidence            6655432 3457899999999886554 58999999997654        2222211     1  112356889999998


Q ss_pred             EEE-EeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchh
Q 013578          314 IIT-ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLD  390 (440)
Q Consensus       314 l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~  390 (440)
                      ++. .+.++.+.+||+++......       ..      .  ...+.+++|+|+|++|+++.  ++.|.+||+.+++.+.
T Consensus       221 ~~~~~~~~~~i~v~d~~~~~~~~~-------~~------~--~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~  285 (300)
T TIGR03866       221 AFVALGPANRVAVVDAKTYEVLDY-------LL------V--GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK  285 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEE-------EE------e--CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence            554 45567899999986543211       00      0  11366899999999988753  7999999999999988


Q ss_pred             hhhccccCCeEEEEecC
Q 013578          391 TAEKAHEGEITCMAWAP  407 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~~~  407 (440)
                      .+.  .....+.++++|
T Consensus       286 ~~~--~~~~~~~~~~~~  300 (300)
T TIGR03866       286 SIK--VGRLPWGVVVRP  300 (300)
T ss_pred             EEE--cccccceeEeCC
Confidence            884  346668888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.8e-21  Score=174.08  Aligned_cols=240  Identities=18%  Similarity=0.266  Sum_probs=180.5

Q ss_pred             CCCCCCCCcccCccc-----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578           69 SHGDKDQNKRHHPLD-----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA  143 (440)
Q Consensus        69 ~~~~~~~~~~~~~~~-----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~  143 (440)
                      .+.+.++.++.|...     -.++.-|...|.+++.  ++++|++|+.+++|.+|.+..++...     ......-++.+
T Consensus        29 ~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~-----iL~Rftlp~r~  101 (933)
T KOG1274|consen   29 CTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDT-----ILARFTLPIRD  101 (933)
T ss_pred             EEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccc-----eeeeeeccceE
Confidence            444566666665432     1233348888988887  45699999999999999998876542     11222366778


Q ss_pred             EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578          144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA  223 (440)
Q Consensus       144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  223 (440)
                      ++|+.+|+                                                                     +++
T Consensus       102 ~~v~g~g~---------------------------------------------------------------------~ia  112 (933)
T KOG1274|consen  102 LAVSGSGK---------------------------------------------------------------------MIA  112 (933)
T ss_pred             EEEecCCc---------------------------------------------------------------------EEE
Confidence            88876665                                                                     677


Q ss_pred             EeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec------
Q 013578          224 SCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG------  297 (440)
Q Consensus       224 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------  297 (440)
                      .|+.|-.|++.++.+......+.+|..+|.++.|+|++++||+.+.||+|++||+..+.        ....+.+      
T Consensus       113 agsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~--------~~~tl~~v~k~n~  184 (933)
T KOG1274|consen  113 AGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI--------LSKTLTGVDKDNE  184 (933)
T ss_pred             eecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch--------hhhhcccCCcccc
Confidence            77788889999999888899999999999999999999999999999999999997654        2222211      


Q ss_pred             -c-ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-
Q 013578          298 -H-KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-  374 (440)
Q Consensus       298 -h-~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-  374 (440)
                       - ...+..++|+|+|..|+..+.|+.|++|+..+......            +....+...+..++|+|+|+|||++. 
T Consensus       185 ~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~------------Lr~~~~ss~~~~~~wsPnG~YiAAs~~  252 (933)
T KOG1274|consen  185 FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK------------LRDKLSSSKFSDLQWSPNGKYIAASTL  252 (933)
T ss_pred             ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee------------ecccccccceEEEEEcCCCcEEeeecc
Confidence             1 34567899999988899999999999999886543211            11112223388999999999999987 


Q ss_pred             CCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      +|.|.|||+++-+.     ......|.+++|.|+.
T Consensus       253 ~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  253 DGQILVWNVDTHER-----HEFKRAVCCEAWKPNA  282 (933)
T ss_pred             CCcEEEEecccchh-----ccccceeEEEecCCCC
Confidence            99999999998222     1234689999999997

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6.2e-23  Score=189.10  Aligned_cols=250  Identities=19%  Similarity=0.307  Sum_probs=194.5

Q ss_pred             CcceeEEEEccCCCE----EEEeeCCCcEEEEecCCC-CCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           91 GDSVTGLCFSSDGKC----LATACADGVIRVHKLDDA-SSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~----l~t~s~dg~v~vW~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      ...-+.|+|.+.|..    ||.|..||.|.+||.... .......+.....|.+.|..+.|++...              
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~--------------  129 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG--------------  129 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC--------------
Confidence            456789999987765    889999999999998763 2333445566677889999999987543              


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV  245 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  245 (440)
                                                                            .+|++|+.||.|.|||+...+.-..+
T Consensus       130 ------------------------------------------------------nlLASGa~~geI~iWDlnn~~tP~~~  155 (1049)
T KOG0307|consen  130 ------------------------------------------------------NLLASGADDGEILIWDLNKPETPFTP  155 (1049)
T ss_pred             ------------------------------------------------------ceeeccCCCCcEEEeccCCcCCCCCC
Confidence                                                                  17899999999999999875443333


Q ss_pred             --eCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc--ceEEEEEcCCCC-EEEEEeC
Q 013578          246 --DTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS--AVTWLCFAPNSE-QIITASK  319 (440)
Q Consensus       246 --~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~-~l~s~~~  319 (440)
                        ......|.+++|+.. ...|++++.+|++.|||++..+        .+..+..|.+  .+..++|+|+.. .|++++.
T Consensus       156 ~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~--------pii~ls~~~~~~~~S~l~WhP~~aTql~~As~  227 (1049)
T KOG0307|consen  156 GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK--------PIIKLSDTPGRMHCSVLAWHPDHATQLLVASG  227 (1049)
T ss_pred             CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC--------cccccccCCCccceeeeeeCCCCceeeeeecC
Confidence              124567999999985 5678899999999999998765        4555555544  477899999764 5677765


Q ss_pred             CC---cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEEE-ecCCEEEEEEcCCccchhhhhc
Q 013578          320 DG---TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILAA-THGSTLQWLSVETGKVLDTAEK  394 (440)
Q Consensus       320 dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~-~~~~~i~i~d~~~~~~~~~~~~  394 (440)
                      |.   .|.+||+|...             .+.....+|...|.++.|++.+ ++|++ |.|+.|.+|+.++++.+..+. 
T Consensus       228 dd~~PviqlWDlR~as-------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-  293 (1049)
T KOG0307|consen  228 DDSAPVIQLWDLRFAS-------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP-  293 (1049)
T ss_pred             CCCCceeEeecccccC-------------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-
Confidence            54   59999998432             1333446788889999999987 56665 459999999999999999984 


Q ss_pred             cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       395 ~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ....-+..+.|+|..+       .+++.++-||.|.|+.+.+.
T Consensus       294 ~~~nW~fdv~w~pr~P-------~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  294 AQGNWCFDVQWCPRNP-------SVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             CCCcceeeeeecCCCc-------chhhhheeccceeeeeeecC
Confidence            5677899999999874       58999999999999998765

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=3.6e-22  Score=172.84  Aligned_cols=123  Identities=21%  Similarity=0.314  Sum_probs=100.5

Q ss_pred             cceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEEEe-cCC
Q 013578          300 SAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILAAT-HGS  376 (440)
Q Consensus       300 ~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~-~~~  376 (440)
                      ..|+.+.|.| |...|+.++.||.|++|.+..+....       ....+......|...|+.+.|+|-. ..|+++ .|.
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e-------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~  700 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE-------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS  700 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCc-------ccCCcceeeecccceEEEEEecchhhhHhhhhhccc
Confidence            3578889998 66789999999999999998654322       1222333445667789999999964 355554 599


Q ss_pred             EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +|++||+.+++....+ .+|.+.|.+++|+|+|        ++++|.+.||+|+||+.++.+
T Consensus       701 Ti~lWDl~~~~~~~~l-~gHtdqIf~~AWSpdG--------r~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  701 TIELWDLANAKLYSRL-VGHTDQIFGIAWSPDG--------RRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             eeeeeehhhhhhhhee-ccCcCceeEEEECCCC--------cceeeeecCceEEEeCCCCCC
Confidence            9999999999998888 6999999999999999        999999999999999988765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=5.1e-22  Score=161.19  Aligned_cols=191  Identities=22%  Similarity=0.339  Sum_probs=151.7

Q ss_pred             EEEEeeCCceEEEEeCCC----------------CceeeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCC
Q 013578          221 IIASCSEGTDISIWHGKT----------------GKLLGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKD  283 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~  283 (440)
                      +.++-+..|.|+||++..                .+++.++.+|...-..++|||- ...|++|..-+.|++|....+. 
T Consensus       167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~-  245 (440)
T KOG0302|consen  167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS-  245 (440)
T ss_pred             eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc-
Confidence            677888999999999742                3467778888888899999993 3357888888999999987633 


Q ss_pred             CceeeeeeeeeeeccccceEEEEEcCCC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          284 GLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       284 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                      ..+    ....+.+|...|-.++|||.. ..|++||.||+|+|||++.+...            +......|...|+.++
T Consensus       246 W~v----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~------------~~~~~kAh~sDVNVIS  309 (440)
T KOG0302|consen  246 WKV----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK------------AAVSTKAHNSDVNVIS  309 (440)
T ss_pred             eee----cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc------------ceeEeeccCCceeeEE
Confidence            111    234567799999999999965 47899999999999999965221            1112256667899999


Q ss_pred             eCCCCCEEEEec-CCEEEEEEcCC---ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          363 LSSDGKILAATH-GSTLQWLSVET---GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       363 ~s~~g~~l~~~~-~~~i~i~d~~~---~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      |+.+-.+||+|+ +|.++|||++.   ++++..+ +.|..+|++|.|+|...       ..|+++|.|..|.+||+.-
T Consensus       310 Wnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e~-------s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  310 WNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHED-------SVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             ccCCcceeeecCCCceEEEEEhhhccCCCcceeE-EeccCCeeEEEeccccC-------ceEEeccCCCcEEEEEeec
Confidence            999988999876 79999999865   5567777 58999999999999752       6889999999999999964

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.89  E-value=6.6e-21  Score=176.69  Aligned_cols=335  Identities=16%  Similarity=0.212  Sum_probs=209.8

Q ss_pred             CCCCCCCCCCCcccCccccccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCc
Q 013578           66 HSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPT  142 (440)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~  142 (440)
                      ..+..+.++..++.....+..|..|...|..++.+++. .+++|||.||+||+|++......  ..+........+..+.
T Consensus      1023 ~~~~~~~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1023 SAWSVGSPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVE 1102 (1431)
T ss_pred             chhhcCCCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceE
Confidence            34555666677777888899999999999999998865 99999999999999998764433  2222233334668899


Q ss_pred             eEEEccCCCeEEEEeecCCcceEEeecccc--ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe
Q 013578          143 AVAFADNATSIVVATHNLSGCSLYMYGEEK--AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST  220 (440)
Q Consensus       143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (440)
                      .+.+.+.+..+++++.|+....+.+-..+.  .............              ...+..+.+..    ...+..
T Consensus      1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~--------------~g~vv~m~a~~----~~~~S~ 1164 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK--------------DGVVVSMHAFT----AIVQSH 1164 (1431)
T ss_pred             EEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccC--------------CCceEEeeccc----ccccce
Confidence            999999999999998885444333322110  0000000011011              11111111111    112223


Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeee--CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-ec
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-KG  297 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~  297 (440)
                      .++.+..-+.|..||.+.......++  ...+.|++++.+|.++++++|+..|.+.+||++.+.        ++... .+
T Consensus      1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~--------~i~sw~~P 1236 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV--------PILSWEHP 1236 (1431)
T ss_pred             eEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc--------eeecccCc
Confidence            67777778889999998776554443  345779999999999999999999999999999875        33332 23


Q ss_pred             cccceEEEEEcCCC---CEEEEE-e-CCCcEEEEecCccccccCCCCc--cccccc--ccc-CCCCCeeeeeeEEeC-CC
Q 013578          298 HKSAVTWLCFAPNS---EQIITA-S-KDGTLRVWNINVRYHLDEDPKT--LKVLPI--PLL-DSNGATLQYDRLSLS-SD  366 (440)
Q Consensus       298 h~~~v~~~~~~p~~---~~l~s~-~-~dg~i~iwd~~~~~~~~~~~~~--~~~~~~--~~~-~~~~~~~~v~~~~~s-~~  366 (440)
                      +..+|..+..+|-.   ...+++ + ..+.|.+|++.++.+.......  ...+..  +.. ....+........+. ++
T Consensus      1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred             ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence            55788888887733   344444 4 5788999999988553221111  111110  110 001111222223333 33


Q ss_pred             CCEEEEecCCEEEEEEcCCccch-----------------------------hhh-------------------------
Q 013578          367 GKILAATHGSTLQWLSVETGKVL-----------------------------DTA-------------------------  392 (440)
Q Consensus       367 g~~l~~~~~~~i~i~d~~~~~~~-----------------------------~~~-------------------------  392 (440)
                      +-.+.+|+|..|+.||....+..                             ..+                         
T Consensus      1317 ~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ 1396 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSD 1396 (1431)
T ss_pred             ceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCC
Confidence            44444566999999997543222                             000                         


Q ss_pred             -hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          393 -EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       393 -~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                       ...|...|+++++.....       .+|++++.||.|+||.
T Consensus      1397 ps~~H~d~Itdma~~~~~q-------~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1397 PSTYHHDPITDMATLKSEQ-------PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             CcccccchhhhhhhhccCc-------cEEEEecCCCeeeecC
Confidence             034677888888776531       6999999999999995

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=2.3e-21  Score=172.79  Aligned_cols=301  Identities=19%  Similarity=0.224  Sum_probs=214.8

Q ss_pred             ccccccccccCcceeEEEEc-cCCCEEEEeeCCCcEEEEecCCCCCcceeeE----------E---ecCCCCCCCceEEE
Q 013578           81 PLDVNTLKGHGDSVTGLCFS-SDGKCLATACADGVIRVHKLDDASSKSFKFL----------R---INLPPGGPPTAVAF  146 (440)
Q Consensus        81 ~~~~~~l~~H~~~V~~l~~s-~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~----------~---~~~~~~~~v~~v~~  146 (440)
                      |..++.-.||..+-.|++|. .+|.++.+++.|++++.+++...........          .   ...-.-.+|..+++
T Consensus       324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~  403 (910)
T KOG1539|consen  324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF  403 (910)
T ss_pred             chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence            34567778999999999998 6899999999999999998754321100000          0   00001134555555


Q ss_pred             ccC----CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578          147 ADN----ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII  222 (440)
Q Consensus       147 ~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  222 (440)
                      ...    -..++++..+  ....+.|+..+...-.            ..........     ......+++.++-|+ +.
T Consensus       404 ~~~RE~~W~Nv~~~h~~--~~~~~tW~~~n~~~G~------------~~L~~~~~~~-----~~~~~~av~vs~CGN-F~  463 (910)
T KOG1539|consen  404 ENAREKEWDNVITAHKG--KRSAYTWNFRNKTSGR------------HVLDPKRFKK-----DDINATAVCVSFCGN-FV  463 (910)
T ss_pred             ccchhhhhcceeEEecC--cceEEEEeccCccccc------------EEecCccccc-----cCcceEEEEEeccCc-eE
Confidence            432    1234444443  3445555544332100            0000000000     001122233356666 88


Q ss_pred             EEeeCCceEEEEeCCCCceeeee---eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578          223 ASCSEGTDISIWHGKTGKLLGNV---DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK  299 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  299 (440)
                      +.|...|+|-+|++++|-....+   ..|..+|+.++...-++.+++++.+|.+.+||+....        ....+. -.
T Consensus       464 ~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~--------l~~~l~-l~  534 (910)
T KOG1539|consen  464 FIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV--------LKKSLR-LG  534 (910)
T ss_pred             EEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc--------eeeeec-cC
Confidence            88999999999999999887777   5789999999999999999999999999999986543        344443 34


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578          300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL  378 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i  378 (440)
                      ..+.++..+-....++.+..|-.|+++|+.+.+..              ....+|...|+.++|||||++|++++ |+.|
T Consensus       535 ~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv--------------R~f~gh~nritd~~FS~DgrWlisasmD~tI  600 (910)
T KOG1539|consen  535 SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV--------------REFWGHGNRITDMTFSPDGRWLISASMDSTI  600 (910)
T ss_pred             CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh--------------HHhhccccceeeeEeCCCCcEEEEeecCCcE
Confidence            66888888888889999999999999999876432              23457888899999999999999977 8999


Q ss_pred             EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-CeEEEEeC
Q 013578          379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-KKVKLWLA  434 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-g~i~vw~~  434 (440)
                      ++||+.++.++..+.  -+.+++.+.|+|++        .+|||...| .-|++|.=
T Consensus       601 r~wDlpt~~lID~~~--vd~~~~sls~SPng--------D~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  601 RTWDLPTGTLIDGLL--VDSPCTSLSFSPNG--------DFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             EEEeccCcceeeeEe--cCCcceeeEECCCC--------CEEEEEEecCceEEEEEc
Confidence            999999999998874  67789999999999        899999999 67999953

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.89  E-value=5.6e-22  Score=153.40  Aligned_cols=306  Identities=18%  Similarity=0.192  Sum_probs=190.4

Q ss_pred             CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578           80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN  159 (440)
Q Consensus        80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~  159 (440)
                      .|.++..|++|.+.|+++.|..++ +|.+|..-|.|++|++.+....    ......+...|+.+.-.|+ ..+.+-+.+
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~----~~~r~~g~~~it~lq~~p~-d~l~tqgRd   76 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDL----PLIRLFGRLFITNLQSIPN-DSLDTQGRD   76 (323)
T ss_pred             CCCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccc----hhhhhhccceeeceeecCC-cchhhcCCC
Confidence            355678889999999999998776 5999999999999999876532    1122234466777777776 344444444


Q ss_pred             CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe---EEEEeeCCc-eEEEEe
Q 013578          160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST---IIASCSEGT-DISIWH  235 (440)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~~~d~-~i~vwd  235 (440)
                         ..+.+|........                     ....+.....+.......+.++.   .++.-++.. .+++-|
T Consensus        77 ---~~L~lw~ia~s~~i---------------------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D  132 (323)
T KOG0322|consen   77 ---PLLILWTIAYSAFI---------------------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD  132 (323)
T ss_pred             ---ceEEEEEccCcceE---------------------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence               44555544331100                     00011111112222222222221   122211111 122233


Q ss_pred             CCCCceeeeee----CCCCcccEEEecC-CC--CeEEEEecCCCEEEEEeEecCCCc--eeeeeeeeeeeccccceEEEE
Q 013578          236 GKTGKLLGNVD----TNQLKNNMAAISP-NG--RFLAAAAFTADVKVWEIVYSKDGL--VKAVTSVMQLKGHKSAVTWLC  306 (440)
Q Consensus       236 ~~~~~~~~~~~----~~~~~v~~~~~s~-~~--~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~  306 (440)
                      ......+....    ...+.+.|..+.. ++  -++++|.++|.+.+||+..+....  ............|..+|.++.
T Consensus       133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld  212 (323)
T KOG0322|consen  133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD  212 (323)
T ss_pred             cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence            32222222221    1233455555332 22  356788899999999997752100  011223445667999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578          307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET  385 (440)
Q Consensus       307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~  385 (440)
                      |.+....=++|+.+..+..|+++-....-+....      ....    ...+..+..-||++++|++. |+.|++|+.++
T Consensus       213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e------~~lk----npGv~gvrIRpD~KIlATAGWD~RiRVyswrt  282 (323)
T KOG0322|consen  213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE------ITLK----NPGVSGVRIRPDGKILATAGWDHRIRVYSWRT  282 (323)
T ss_pred             echhhcCCcCCCccccceeeeeccccCcccccce------EEec----CCCccceEEccCCcEEeecccCCcEEEEEecc
Confidence            9886666678888889999998733111000000      0011    12366789999999999865 99999999999


Q ss_pred             ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          386 GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       386 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      .+.+..+ +-|.+.|++++|+|+.        .++|.+|.|++|.+|++
T Consensus       283 l~pLAVL-kyHsagvn~vAfspd~--------~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  283 LNPLAVL-KYHSAGVNAVAFSPDC--------ELMAAASKDARISLWKL  322 (323)
T ss_pred             CCchhhh-hhhhcceeEEEeCCCC--------chhhhccCCceEEeeec
Confidence            9999999 5899999999999997        79999999999999986

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=5.7e-21  Score=165.39  Aligned_cols=261  Identities=16%  Similarity=0.236  Sum_probs=179.3

Q ss_pred             EEEcc---CCCEEEEeeCCCcEEEEecCCCCCc-ceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578           97 LCFSS---DGKCLATACADGVIRVHKLDDASSK-SFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK  172 (440)
Q Consensus        97 l~~s~---dg~~l~t~s~dg~v~vW~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~  172 (440)
                      ..|++   ....|+.+..||.|.++|.....-. ....+.....|...|..+.|.| ++                     
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge---------------------  112 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GE---------------------  112 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cc---------------------
Confidence            56665   3457899999999999998754322 1122344556777788887776 32                     


Q ss_pred             ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee--eeCCCC
Q 013578          173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN--VDTNQL  250 (440)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~  250 (440)
                                                                     ..|++.+.|.++++||+++.++...  +.+|..
T Consensus       113 -----------------------------------------------~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~  145 (720)
T KOG0321|consen  113 -----------------------------------------------SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG  145 (720)
T ss_pred             -----------------------------------------------eeEEEccCCceeeeeeeccceeecceeeccccc
Confidence                                                           2788888999999999999988776  889999


Q ss_pred             cccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCce-------------------eeeeeeeeeeccccceEE---EEE
Q 013578          251 KNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLV-------------------KAVTSVMQLKGHKSAVTW---LCF  307 (440)
Q Consensus       251 ~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~-------------------~~~~~~~~~~~h~~~v~~---~~~  307 (440)
                      .+.+++|.|. ...|++|+.||.|.|||++.......                   ...+.+...+++...|.+   +.+
T Consensus       146 SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~  225 (720)
T KOG0321|consen  146 SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL  225 (720)
T ss_pred             ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE
Confidence            9999999995 56889999999999999975431000                   001122333445555555   555


Q ss_pred             cCCCCEEEEEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE-EecCCEEEEEEcCC
Q 013578          308 APNSEQIITASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQWLSVET  385 (440)
Q Consensus       308 ~p~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~~~i~i~d~~~  385 (440)
                      ..|...||+++. |+.|++||++......... .......+..  ......+.++.....|.+|. .+.|+.|++|++.+
T Consensus       226 fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e-p~~~~~~~t~--skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  226 FKDESTLASAGAADSTIKVWDLRKNYTAYRQE-PRGSDKYPTH--SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             EeccceeeeccCCCcceEEEeecccccccccC-CCcccCccCc--ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence            678888999887 9999999999776543211 1111111111  22345567777777778665 47799999999987


Q ss_pred             ccc--hhhhhccccC--CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          386 GKV--LDTAEKAHEG--EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       386 ~~~--~~~~~~~h~~--~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ...  +..+ .++..  --..-..+|++        .+|++|+.|....+|.+.+.+
T Consensus       303 ~s~sP~~~~-sg~~~~sf~vks~lSpd~--------~~l~SgSsd~~ayiw~vs~~e  350 (720)
T KOG0321|consen  303 LSISPVAEF-SGKLNSSFYVKSELSPDD--------CSLLSGSSDEQAYIWVVSSPE  350 (720)
T ss_pred             cCcCchhhc-cCcccceeeeeeecCCCC--------ceEeccCCCcceeeeeecCcc
Confidence            543  3333 22221  11223467887        899999999999999998765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.5e-20  Score=146.84  Aligned_cols=340  Identities=18%  Similarity=0.171  Sum_probs=211.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhccccc-cchhhcccccccCCC-----CCCCCCCC-----CCCCC--------------
Q 013578            3 PVLSITVVSVVLGALIAIIFFKSYFTK-RRSEIKSIAKTELEP-----DHQKKPTK-----PSQPI--------------   57 (440)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~-----~~~~~--------------   57 (440)
                      |.|+..+++.++.-.++..++.+..+. .+.+...+..+...+     .+.++-+.     +.|+.              
T Consensus         7 ~~l~~~l~g~~~a~g~~~~y~~k~~~~~~q~a~~~p~D~v~~~~s~~p~kkk~hqr~~~~k~~q~~f~Hpl~~~~LKgH~   86 (420)
T KOG2096|consen    7 PILIGGLVGFVTVMGVAIIYVAKKEQQGEQEAVDVPMDEVTETISEEPVKKKKHQRNDQWKAKQPTFVHPLNVSVLKGHK   86 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhhheeccCChhhhhhccCCCCcccCccccCCcchhcccchhhhcccCCCcccchhhhhhhccC
Confidence            667778888888888888888876654 444444444433332     22111111     01100              


Q ss_pred             ----CCCCCCCCCCCCCCCCCCCcccCccccccccccC--------cceeEEEEccCCCEEE-EeeCCCcEEEEecCCCC
Q 013578           58 ----SKKSHSKPHSHSHGDKDQNKRHHPLDVNTLKGHG--------DSVTGLCFSSDGKCLA-TACADGVIRVHKLDDAS  124 (440)
Q Consensus        58 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~--------~~V~~l~~s~dg~~l~-t~s~dg~v~vW~~~~~~  124 (440)
                          -...++.-+..++...|+.+++|...=...+.|.        +--+.++|+||-+-++ ++-...++++|.+...+
T Consensus        87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~  166 (420)
T KOG2096|consen   87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKT  166 (420)
T ss_pred             CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence                0012223344556678899999977544444442        3467899999976544 45566689999876432


Q ss_pred             Ccce--ee-----EEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeeccccc
Q 013578          125 SKSF--KF-----LRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKV  197 (440)
Q Consensus       125 ~~~~--~~-----~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (440)
                      ....  ..     +.....|.-.+..+-...++++|++++.+   ..+.+|+........                    
T Consensus       167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d---t~i~lw~lkGq~L~~--------------------  223 (420)
T KOG2096|consen  167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD---TKICLWDLKGQLLQS--------------------  223 (420)
T ss_pred             cCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC---CcEEEEecCCceeee--------------------
Confidence            2111  11     11223345567777778888999999877   455666554321100                    


Q ss_pred             ccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC---CC-----ceeeeeeCCCCcccEEEecCCCCeEEEEec
Q 013578          198 HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK---TG-----KLLGNVDTNQLKNNMAAISPNGRFLAAAAF  269 (440)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~---~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  269 (440)
                          +-........+..+|+|+ ++++++-.-.|++|.+-   .|     ..+..+.+|+..|..++|+++...+++.+.
T Consensus       224 ----idtnq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk  298 (420)
T KOG2096|consen  224 ----IDTNQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK  298 (420)
T ss_pred             ----eccccccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence                000011112234489999 88888877789999863   22     235677899999999999999999999999


Q ss_pred             CCCEEEEEeEecCCCceeeeeee----eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc
Q 013578          270 TADVKVWEIVYSKDGLVKAVTSV----MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP  345 (440)
Q Consensus       270 dg~i~i~d~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  345 (440)
                      ||+++|||.+......... ..+    ..+..-.+.-..++.+|+|+.|+.... ..++++..+++.....         
T Consensus       299 DG~wriwdtdVrY~~~qDp-k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~---------  367 (420)
T KOG2096|consen  299 DGKWRIWDTDVRYEAGQDP-KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPE---------  367 (420)
T ss_pred             CCcEEEeeccceEecCCCc-hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchh---------
Confidence            9999999975432110000 011    112222334458999999998877654 4899999886543211         


Q ss_pred             ccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCC
Q 013578          346 IPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVET  385 (440)
Q Consensus       346 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~  385 (440)
                          ....|...|.+++|+++|++++++.|..++++.-..
T Consensus       368 ----~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ntp  403 (420)
T KOG2096|consen  368 ----LEDIHSTTISSISYSSDGKYIATCGDRYVRVIRNTP  403 (420)
T ss_pred             ----HHHhhcCceeeEEecCCCcEEeeecceeeeeecCCC
Confidence                112345668999999999999999999999986433

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.2e-20  Score=149.31  Aligned_cols=244  Identities=18%  Similarity=0.267  Sum_probs=173.8

Q ss_pred             CCCCCCCCcccCcc--------ccccccccCcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCC--C--cceeeEEec
Q 013578           69 SHGDKDQNKRHHPL--------DVNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRVHKLDDAS--S--KSFKFLRIN  134 (440)
Q Consensus        69 ~~~~~~~~~~~~~~--------~~~~l~~H~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~--~--~~~~~~~~~  134 (440)
                      ++.+.|+..++|..        +....+.|.+.|..+.|.+  -|+.+|+++.|++++||.-....  .  ..+......
T Consensus        29 AtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl  108 (361)
T KOG2445|consen   29 ATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTL  108 (361)
T ss_pred             eeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEe
Confidence            45566666666652        3456788999999999976  48999999999999999863211  1  233444455


Q ss_pred             CCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccccc
Q 013578          135 LPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYG  214 (440)
Q Consensus       135 ~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (440)
                      ......|+++.|.|...                                                               
T Consensus       109 ~DsrssV~DV~FaP~hl---------------------------------------------------------------  125 (361)
T KOG2445|consen  109 VDSRSSVTDVKFAPKHL---------------------------------------------------------------  125 (361)
T ss_pred             ecCCcceeEEEecchhc---------------------------------------------------------------
Confidence            56667889999988532                                                               


Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCC------ceeeeee-------CCCCcccEEEecCC---CCeEEEEecC-----CCE
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTG------KLLGNVD-------TNQLKNNMAAISPN---GRFLAAAAFT-----ADV  273 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~-------~~~~~v~~~~~s~~---~~~l~~~~~d-----g~i  273 (440)
                         |- .+++++.||.||||+...-      .....+.       .+..+..|+.|+|.   ..+||+|+.+     +.+
T Consensus       126 ---GL-klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~  201 (361)
T KOG2445|consen  126 ---GL-KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV  201 (361)
T ss_pred             ---ce-EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccce
Confidence               11 7899999999999986543      2223333       34556778999874   4678888766     579


Q ss_pred             EEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC----CEEEEEeCCCcEEEEecCccccccC-----CCCccccc
Q 013578          274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS----EQIITASKDGTLRVWNINVRYHLDE-----DPKTLKVL  344 (440)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~  344 (440)
                      +||......    +.+..+..+.+|..+|+.++|.|+-    ..||+++.|| |+||.+......-.     .+.....+
T Consensus       202 ~Iye~~e~~----rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l  276 (361)
T KOG2445|consen  202 KIYEYNENG----RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDL  276 (361)
T ss_pred             EEEEecCCc----ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcccc
Confidence            999876554    4555677888999999999999953    4689999999 99999985321100     11111112


Q ss_pred             ccc-ccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcC
Q 013578          345 PIP-LLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVE  384 (440)
Q Consensus       345 ~~~-~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~  384 (440)
                      ++. +....+|..+|.++.|+--|..|++ |+||.|++|...
T Consensus       277 ~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  277 PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            222 2345688889999999999999997 569999999754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.8e-20  Score=157.73  Aligned_cols=188  Identities=11%  Similarity=0.168  Sum_probs=155.7

Q ss_pred             eEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc-
Q 013578          220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH-  298 (440)
Q Consensus       220 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h-  298 (440)
                      .++++|+..+.|+|||++...+.+.+..|...|+++.++....+||+++..|.|.|..+.++.        ....+.-. 
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~--------~tt~f~~~s  163 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ--------KTTTFTIDS  163 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc--------cccceecCC
Confidence            389999999999999999777888899999999999999999999999999999999987765        33334433 


Q ss_pred             ccceEEEEEcCCCCE-EEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE--ecC
Q 013578          299 KSAVTWLCFAPNSEQ-IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA--THG  375 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~  375 (440)
                      ...|.-+.|+|..++ |.+++.+|.|.+||+......             ......|..+...++|+|....|.+  |.|
T Consensus       164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~-------------~~~~~~HsAP~~gicfspsne~l~vsVG~D  230 (673)
T KOG4378|consen  164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI-------------FHASEAHSAPCRGICFSPSNEALLVSVGYD  230 (673)
T ss_pred             CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc-------------cchhhhccCCcCcceecCCccceEEEeccc
Confidence            344668999998775 568889999999999865432             2333456677788999998875543  679


Q ss_pred             CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ..|.+||..+.+....+.  .+.+...++|.++|        .+|+.|...|.|..||++..+
T Consensus       231 kki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G--------~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  231 KKINIYDIRSQASTDRLT--YSHPLSTVAFSECG--------TYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             ceEEEeecccccccceee--ecCCcceeeecCCc--------eEEEeecCCceEEEEecccCC
Confidence            999999999888877774  66789999999999        899999999999999998764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=6.6e-21  Score=158.79  Aligned_cols=284  Identities=14%  Similarity=0.140  Sum_probs=195.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCcccCcc------ccccccccCcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCcceee
Q 013578           58 SKKSHSKPHSHSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKSFKF  130 (440)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~~~~  130 (440)
                      +...++.......++.++..+++..      .++.+.--..+|.+++|.|+|. .+++++.-..+..||+.+.+......
T Consensus       218 sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~  297 (514)
T KOG2055|consen  218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP  297 (514)
T ss_pred             EEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccC
Confidence            3444555555566677777776633      3555555578999999999998 99999999999999998765442222


Q ss_pred             EEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccc
Q 013578          131 LRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGAS  210 (440)
Q Consensus       131 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (440)
                      ..  ......+.....++++++|+..+..+   .|.+............+..+                        ...
T Consensus       298 ~~--g~e~~~~e~FeVShd~~fia~~G~~G---~I~lLhakT~eli~s~KieG------------------------~v~  348 (514)
T KOG2055|consen  298 PY--GVEEKSMERFEVSHDSNFIAIAGNNG---HIHLLHAKTKELITSFKIEG------------------------VVS  348 (514)
T ss_pred             CC--CcccchhheeEecCCCCeEEEcccCc---eEEeehhhhhhhhheeeecc------------------------EEe
Confidence            11  11234677888999999999998773   44444433332211111111                        111


Q ss_pred             ccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC-CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578          211 ATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ-LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV  289 (440)
Q Consensus       211 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  289 (440)
                      ...++.+++ .|++++.+|.|.+||++...+++.+.... -.-+.++.++++.+||+|+..|.|.|||.......  ...
T Consensus       349 ~~~fsSdsk-~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s--~~P  425 (514)
T KOG2055|consen  349 DFTFSSDSK-ELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS--TNP  425 (514)
T ss_pred             eEEEecCCc-EEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc--CCC
Confidence            223456776 67777778899999999999988876432 22356788899999999999999999996543211  122


Q ss_pred             eeeeeeeccccceEEEEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578          290 TSVMQLKGHKSAVTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  367 (440)
                      +++..+..-...|++|+|+|+++.||.+|  .+..+|+-.+.......       .++..    ......++|++|||.+
T Consensus       426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFs-------NfP~~----n~~vg~vtc~aFSP~s  494 (514)
T KOG2055|consen  426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFS-------NFPTS----NTKVGHVTCMAFSPNS  494 (514)
T ss_pred             CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeec-------cCCCC----CCcccceEEEEecCCC
Confidence            35566666678899999999999988777  46789998887543322       22111    2334558999999999


Q ss_pred             CEEEEec-CCEEEEEEcC
Q 013578          368 KILAATH-GSTLQWLSVE  384 (440)
Q Consensus       368 ~~l~~~~-~~~i~i~d~~  384 (440)
                      -+||.|. +|.+.+|.+.
T Consensus       495 G~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  495 GYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ceEEeecCCCceeeEeec
Confidence            9999998 7999999753

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=8e-20  Score=159.45  Aligned_cols=316  Identities=15%  Similarity=0.196  Sum_probs=216.1

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      ...+..-.+.|++++.+|.+..++.|+.||.+...+...+.   ....+.+....+.+.++.|+|++..++.++.|   .
T Consensus       103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~---I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D---g  176 (691)
T KOG2048|consen  103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK---ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID---G  176 (691)
T ss_pred             eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce---EEEEeecccccceEEEEEecCCccEEEecccC---c
Confidence            34455567899999999999999999999977666665443   23344445556899999999999999999988   5


Q ss_pred             eEEeeccccccccc--cccccCCCC-CCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578          164 SLYMYGEEKAISTN--EGKQQSKLP-GPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK  240 (440)
Q Consensus       164 ~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  240 (440)
                      .+.+|+........  ..+....-. .+...|....                  -.++  .+++|...|+|.+||...+.
T Consensus       177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~------------------Lrd~--tI~sgDS~G~V~FWd~~~gT  236 (691)
T KOG2048|consen  177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLF------------------LRDS--TIASGDSAGTVTFWDSIFGT  236 (691)
T ss_pred             eEEEEEcCCCceEEEeeecccccccCCceEEEEEEE------------------eecC--cEEEecCCceEEEEcccCcc
Confidence            67888776553222  000000001 2233443322                  2233  69999999999999999999


Q ss_pred             eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC
Q 013578          241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD  320 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d  320 (440)
                      .++.+..|...|.+++.+++++++++++.|++|..|.....+.    ++........|...|.+++..++  .+++|+.|
T Consensus       237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~----~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d  310 (691)
T KOG2048|consen  237 LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS----EWVINSRRDLHAHDVRSMAVIEN--ALISGGRD  310 (691)
T ss_pred             hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc----ceeeeccccCCcccceeeeeecc--eEEeccee
Confidence            9999999999999999999999999999999999998766552    24344455678888999999876  88999999


Q ss_pred             CcEEEEecCccccccCC------------------------CCccccc--ccc-----------ccCCCCCeeeeeeEEe
Q 013578          321 GTLRVWNINVRYHLDED------------------------PKTLKVL--PIP-----------LLDSNGATLQYDRLSL  363 (440)
Q Consensus       321 g~i~iwd~~~~~~~~~~------------------------~~~~~~~--~~~-----------~~~~~~~~~~v~~~~~  363 (440)
                      .++.+-..+........                        .......  ...           ..-.......|.+.+.
T Consensus       311 ~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~ai  390 (691)
T KOG2048|consen  311 FTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAI  390 (691)
T ss_pred             eEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeecc
Confidence            88887655431110000                        0000000  000           0000112234788999


Q ss_pred             CCCCCEEEEecCCEEEEEEcCC--------------------------------------------------ccchhhh-
Q 013578          364 SSDGKILAATHGSTLQWLSVET--------------------------------------------------GKVLDTA-  392 (440)
Q Consensus       364 s~~g~~l~~~~~~~i~i~d~~~--------------------------------------------------~~~~~~~-  392 (440)
                      ||+|.+++.+.=..+++|.+..                                                  .+.+..+ 
T Consensus       391 SPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~  470 (691)
T KOG2048|consen  391 SPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQ  470 (691)
T ss_pred             CCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccc
Confidence            9999999987644444443322                                                  0111111 


Q ss_pred             hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          393 EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       393 ~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      .++-...|..+..+++|        ++|+..+.+|.|.+|++.+.+.
T Consensus       471 ~~~~~~~I~~l~~SsdG--------~yiaa~~t~g~I~v~nl~~~~~  509 (691)
T KOG2048|consen  471 SQAKCPSISRLVVSSDG--------NYIAAISTRGQIFVYNLETLES  509 (691)
T ss_pred             cccCCCcceeEEEcCCC--------CEEEEEeccceEEEEEccccee
Confidence            02234578999999999        8999999999999999998764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.6e-21  Score=166.46  Aligned_cols=267  Identities=18%  Similarity=0.246  Sum_probs=190.4

Q ss_pred             CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecC---CCCCcceeeEEecCCCCCCCceEEEccCCCeEEEE
Q 013578           80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLD---DASSKSFKFLRINLPPGGPPTAVAFADNATSIVVA  156 (440)
Q Consensus        80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~---~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  156 (440)
                      |...+ ++..|.+.|+.++|.|-...|++|+.||++++|+++   .........+..+..|.++|.|+++.+++.     
T Consensus       284 w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-----  357 (577)
T KOG0642|consen  284 WNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-----  357 (577)
T ss_pred             cceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-----
Confidence            44444 788999999999999999999999999999999993   333344555667788999999998877655     


Q ss_pred             eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578          157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG  236 (440)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~  236 (440)
                                                                                      .+++|+-||+|+.|++
T Consensus       358 ----------------------------------------------------------------~~ysgg~Dg~I~~w~~  373 (577)
T KOG0642|consen  358 ----------------------------------------------------------------HCYSGGIDGTIRCWNL  373 (577)
T ss_pred             ----------------------------------------------------------------EEEeeccCceeeeecc
Confidence                                                                            6778888888999965


Q ss_pred             CCC----------ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEE
Q 013578          237 KTG----------KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC  306 (440)
Q Consensus       237 ~~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  306 (440)
                      ...          .....+.+|...+..+++|+....|++++.||++++|+......       +...-....+--++++
T Consensus       374 p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-------~~f~~~~e~g~Plsvd  446 (577)
T KOG0642|consen  374 PPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-------CTFGEPKEHGYPLSVD  446 (577)
T ss_pred             CCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-------cccCCccccCCcceEe
Confidence            421          23356678999999999999999999999999999999754431       1111111223345666


Q ss_pred             EcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578          307 FAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE  384 (440)
Q Consensus       307 ~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~  384 (440)
                      +-.... +.++...-+.-.++++.....+       ..+.............+..+.+.|.+.+..++. ++.|+++|..
T Consensus       447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~-------~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  447 RTSSRPAHSLASFRFGYTSIDDMEVVSDL-------LIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             eccchhHhhhhhcccccccchhhhhhhhe-------eeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence            643321 2222222223333343332221       111111111222234467788999998888765 8999999999


Q ss_pred             CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       385 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      +++++... .+|...++++++.|++        .+|++++.||.+++|++....|
T Consensus       520 ~~~~l~s~-~a~~~svtslai~~ng--------~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  520 TGKILHSM-VAHKDSVTSLAIDPNG--------PYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             ccccchhe-eeccceecceeecCCC--------ceEEeecCCceeehhhccchhe
Confidence            99999998 5899999999999999        8999999999999999976543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=7.9e-21  Score=152.47  Aligned_cols=196  Identities=17%  Similarity=0.246  Sum_probs=136.4

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccC
Q 013578          104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQS  183 (440)
Q Consensus       104 ~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (440)
                      +.+|++-..|.|++||..++.     .+..+..+...+..+.|..+.                                 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~-----~l~~fk~~~~~~N~vrf~~~d---------------------------------   82 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ-----LLEEFKGPPATTNGVRFISCD---------------------------------   82 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh-----hhheecCCCCcccceEEecCC---------------------------------
Confidence            578888899999999998854     334444555556666665321                                 


Q ss_pred             CCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee--CCC-CcccEEEecCC
Q 013578          184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD--TNQ-LKNNMAAISPN  260 (440)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~-~~v~~~~~s~~  260 (440)
                                                        +...+.+|+.||+|++||++.......+.  .+. .+..|++.+-.
T Consensus        83 ----------------------------------s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck  128 (376)
T KOG1188|consen   83 ----------------------------------SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK  128 (376)
T ss_pred             ----------------------------------CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence                                              11268999999999999999876554443  332 35667777778


Q ss_pred             CCeEEEEec----CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCcccccc
Q 013578          261 GRFLAAAAF----TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLD  335 (440)
Q Consensus       261 ~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~  335 (440)
                      ++.+++|+.    +-.+.+||+|..+..      ...-...|.+.|+++.|+|+ -++|++||.||.|.+||++....- 
T Consensus       129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee-  201 (376)
T KOG1188|consen  129 KNIIACGTELTRSDASVVLWDVRSEQQL------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE-  201 (376)
T ss_pred             CCeEEeccccccCceEEEEEEeccccch------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch-
Confidence            889998864    667999999877621      12224569999999999995 468999999999999999854211 


Q ss_pred             CCCCccccccccccCCCCCeeeeeeEEeCCCC--CEEEEecCCEEEEEEcCCccc
Q 013578          336 EDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG--KILAATHGSTLQWLSVETGKV  388 (440)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~i~i~d~~~~~~  388 (440)
                                -++...-.+...|.++.|..++  +++.....+...+|+++.+..
T Consensus       202 ----------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  202 ----------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             ----------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence                      1122222344557778887777  655556677777777766543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.2e-20  Score=141.49  Aligned_cols=245  Identities=15%  Similarity=0.134  Sum_probs=173.5

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCC-----CcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDAS-----SKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~-----~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      ...|.+-+++|.+++|+.|+.+|+|.+..+....     .+.....-....|+++++.++|..+                
T Consensus        10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----------------   73 (325)
T KOG0649|consen   10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----------------   73 (325)
T ss_pred             HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----------------
Confidence            3457778999999999999999999999986421     1111223334677888888888732                


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC------
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG------  239 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~------  239 (440)
                                                                             +|++|+. |.|+-|..+..      
T Consensus        74 -------------------------------------------------------~Lls~gd-G~V~gw~W~E~~es~~~   97 (325)
T KOG0649|consen   74 -------------------------------------------------------FLLSGGD-GLVYGWEWNEEEESLAT   97 (325)
T ss_pred             -------------------------------------------------------heeeccC-ceEEEeeehhhhhhccc
Confidence                                                                   3444433 55555543321      


Q ss_pred             ---------ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC
Q 013578          240 ---------KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN  310 (440)
Q Consensus       240 ---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~  310 (440)
                               .....  ..-..|+++...|..+-++.++.|+.++-||+..++        ....++||++.|.++.--..
T Consensus        98 K~lwe~~~P~~~~~--~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~--------i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   98 KRLWEVKIPMQVDA--VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR--------IQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             hhhhhhcCccccCc--ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE--------EEEEEcCCcceeeeeeeccc
Confidence                     11111  123457889999988888888899999999998876        77889999999999988555


Q ss_pred             CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchh
Q 013578          311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLD  390 (440)
Q Consensus       311 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~  390 (440)
                      ...+++|++||++|+||.++.++.....    ....+..........|  .+..-+..+|++|.+..+.+|++++.++..
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie----~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~lslwhLrsse~t~  241 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIE----PYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPKLSLWHLRSSESTC  241 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEec----cccChhhcCcccCcee--EEEeccCceEEecCCCceeEEeccCCCceE
Confidence            5679999999999999999887653211    1111111111222334  445566779999999999999999999888


Q ss_pred             hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      .+.  -..+|..+.|..|          .++++|..+.|.-|.+.
T Consensus       242 vfp--ipa~v~~v~F~~d----------~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  242 VFP--IPARVHLVDFVDD----------CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             EEe--cccceeEeeeecc----------eEEEeccccceeeeeec
Confidence            774  6678999999886          57777777778877764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=3.2e-20  Score=154.02  Aligned_cols=189  Identities=21%  Similarity=0.259  Sum_probs=147.6

Q ss_pred             EEEEeeCCceEEEEeCCCCce---eee------------------eeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEe
Q 013578          221 IIASCSEGTDISIWHGKTGKL---LGN------------------VDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEI  278 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~---~~~------------------~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~  278 (440)
                      +++.|+.|..|.|||+.-...   ...                  ..+|...|..+.|+.+ .+.||+|+.|.+|.+||+
T Consensus       194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~  273 (463)
T KOG0270|consen  194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV  273 (463)
T ss_pred             eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence            999999999999999853211   011                  1246666777888774 578999999999999999


Q ss_pred             EecCCCceeeeeeeeeeeccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578          279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ  357 (440)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (440)
                      ..++        +...+..|...|.+++|+|. ..+|++|+.|++|.+.|.+...+.   ....           .-...
T Consensus       274 ~~g~--------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s---~~~w-----------k~~g~  331 (463)
T KOG0270|consen  274 DTGK--------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS---GKEW-----------KFDGE  331 (463)
T ss_pred             CCCC--------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc---CceE-----------Eeccc
Confidence            8887        67778789999999999995 567899999999999999842211   1111           11234


Q ss_pred             eeeEEeCCCCC--EEEEecCCEEEEEEcCCc-cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          358 YDRLSLSSDGK--ILAATHGSTLQWLSVETG-KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       358 v~~~~~s~~g~--~l~~~~~~~i~i~d~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      |-.++|.|...  ++++..||.|+-+|++.. +++.++ ++|.++|.++++++..+       .+|+|++.|+.|++|++
T Consensus       332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-~AHd~~ISgl~~n~~~p-------~~l~t~s~d~~Vklw~~  403 (463)
T KOG0270|consen  332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-KAHDDEISGLSVNIQTP-------GLLSTASTDKVVKLWKF  403 (463)
T ss_pred             eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE-EeccCCcceEEecCCCC-------cceeeccccceEEEEee
Confidence            77899999866  344456899999999876 778887 69999999999998764       68999999999999999


Q ss_pred             CCCCC
Q 013578          435 PSLES  439 (440)
Q Consensus       435 ~~~~~  439 (440)
                      ..-.+
T Consensus       404 ~~~~~  408 (463)
T KOG0270|consen  404 DVDSP  408 (463)
T ss_pred             cCCCC
Confidence            76544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3e-21  Score=178.17  Aligned_cols=190  Identities=16%  Similarity=0.303  Sum_probs=145.2

Q ss_pred             EEEEeeCCceEEEEeCCC---C---ceeeeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKT---G---KLLGNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~---~---~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      +++.|.+||.|.+||...   +   ..+.+...|.+.|..+.|++.. ++||+|+.||.|.|||+.....        -.
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t--------P~  153 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET--------PF  153 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC--------CC
Confidence            799999999999999764   2   3456778899999999999965 5999999999999999976441        11


Q ss_pred             ee--eccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-E
Q 013578          294 QL--KGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-I  369 (440)
Q Consensus       294 ~~--~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~  369 (440)
                      ..  ....+.|.+++|+.. ...|++++.+|.+.|||++..+.+-.         .   ........+..++|+|++. .
T Consensus       154 ~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~---------l---s~~~~~~~~S~l~WhP~~aTq  221 (1049)
T KOG0307|consen  154 TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK---------L---SDTPGRMHCSVLAWHPDHATQ  221 (1049)
T ss_pred             CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc---------c---ccCCCccceeeeeeCCCCcee
Confidence            11  224577999999764 34688999999999999996543211         1   1112225577899999965 3


Q ss_pred             EEE--ecC--CEEEEEEcCCcc-chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          370 LAA--THG--STLQWLSVETGK-VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       370 l~~--~~~--~~i~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      |++  .+|  -.|.+||++... .++.+ .+|...|.++.|++.++       ++|+|++.|+.|.+|+.+++|
T Consensus       222 l~~As~dd~~PviqlWDlR~assP~k~~-~~H~~GilslsWc~~D~-------~lllSsgkD~~ii~wN~~tgE  287 (1049)
T KOG0307|consen  222 LLVASGDDSAPVIQLWDLRFASSPLKIL-EGHQRGILSLSWCPQDP-------RLLLSSGKDNRIICWNPNTGE  287 (1049)
T ss_pred             eeeecCCCCCceeEeecccccCCchhhh-cccccceeeeccCCCCc-------hhhhcccCCCCeeEecCCCce
Confidence            333  333  489999987655 45555 69999999999999763       799999999999999999976

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=2.7e-19  Score=140.64  Aligned_cols=262  Identities=16%  Similarity=0.276  Sum_probs=185.2

Q ss_pred             ccccccccCcceeEEEEcc--C-CCEEEEee----CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEE
Q 013578           83 DVNTLKGHGDSVTGLCFSS--D-GKCLATAC----ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVV  155 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~--d-g~~l~t~s----~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  155 (440)
                      ++..+..| -.+.++.|+.  + +.+||.|+    ..+.|.|-.++....+.  .....+.|.-+++.+.|.|+....  
T Consensus        37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~--~~~a~fd~~YP~tK~~wiPd~~g~--  111 (364)
T KOG0290|consen   37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGEL--VEDANFDHPYPVTKLMWIPDSKGV--  111 (364)
T ss_pred             eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCce--eccCCCCCCCCccceEecCCcccc--
Confidence            35556655 4688999984  3 45788887    34678887776443331  223346788899999999985411  


Q ss_pred             EeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEe
Q 013578          156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWH  235 (440)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd  235 (440)
                                                                                 .|+   +|++++.  .+|+|.
T Consensus       112 -----------------------------------------------------------~pd---lLATs~D--~LRlWr  127 (364)
T KOG0290|consen  112 -----------------------------------------------------------YPD---LLATSSD--FLRLWR  127 (364)
T ss_pred             -----------------------------------------------------------Ccc---hhhcccC--eEEEEe
Confidence                                                                       121   5555543  399998


Q ss_pred             CCCCce----eeee-----eCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578          236 GKTGKL----LGNV-----DTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL  305 (440)
Q Consensus       236 ~~~~~~----~~~~-----~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~  305 (440)
                      +...+.    ...+     ..+..+++++.|+. +.+++.+.+-|-++.|||+..+..+.     ...++-+|...|..+
T Consensus       128 i~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-----vkTQLIAHDKEV~DI  202 (364)
T KOG0290|consen  128 IGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-----VKTQLIAHDKEVYDI  202 (364)
T ss_pred             ccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-----eeeEEEecCcceeEE
Confidence            763211    1111     23456788888886 67899999999999999998764322     244577899999999


Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEE-e-cCCEEEEE
Q 013578          306 CFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAA-T-HGSTLQWL  381 (440)
Q Consensus       306 ~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~-~-~~~~i~i~  381 (440)
                      +|...+. .||+.+.||.||+||++.....       .    -++.......+..+++|++... ++|+ + +...|.|.
T Consensus       203 af~~~s~~~FASvgaDGSvRmFDLR~leHS-------T----IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL  271 (364)
T KOG0290|consen  203 AFLKGSRDVFASVGADGSVRMFDLRSLEHS-------T----IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL  271 (364)
T ss_pred             EeccCccceEEEecCCCcEEEEEecccccc-------e----EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence            9998654 6899999999999999954321       1    1222223244567899998765 6665 2 35789999


Q ss_pred             EcCCcc-chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          382 SVETGK-VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       382 d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      |++... .+.++ .+|.+.|+.++|.|...       ..|.|+|+|..+.+||+.+.
T Consensus       272 DiR~P~tpva~L-~~H~a~VNgIaWaPhS~-------~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  272 DIRVPCTPVARL-RNHQASVNGIAWAPHSS-------SHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             EecCCCcceehh-hcCcccccceEecCCCC-------ceeeecCCcceEEEEecccc
Confidence            998765 55566 69999999999999863       78999999999999999763

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=2.1e-19  Score=141.13  Aligned_cols=254  Identities=19%  Similarity=0.305  Sum_probs=176.3

Q ss_pred             cccccccCcceeEEEEcc-CCCEEEEeeCC-------CcEEEEecCCCCCc----ceee-EEecCCCCCCCceEEEccCC
Q 013578           84 VNTLKGHGDSVTGLCFSS-DGKCLATACAD-------GVIRVHKLDDASSK----SFKF-LRINLPPGGPPTAVAFADNA  150 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~-dg~~l~t~s~d-------g~v~vW~~~~~~~~----~~~~-~~~~~~~~~~v~~v~~~~~~  150 (440)
                      -+.|..|.+.|+.++-+| |.+.|+|+-.|       -.+.||.+......    ...+ ......+-+.+.++.|.|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            456788999999999999 55666766442       23689998754332    0111 11222344578888888877


Q ss_pred             CeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce
Q 013578          151 TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD  230 (440)
Q Consensus       151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  230 (440)
                      ..+++..                                                                      |..
T Consensus       136 ~klasm~----------------------------------------------------------------------dn~  145 (370)
T KOG1007|consen  136 DKLASMD----------------------------------------------------------------------DNN  145 (370)
T ss_pred             CeeEEec----------------------------------------------------------------------cCc
Confidence            6554332                                                                      445


Q ss_pred             EEEEeCCCCce-eeeee-----CCCCcccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce
Q 013578          231 ISIWHGKTGKL-LGNVD-----TNQLKNNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV  302 (440)
Q Consensus       231 i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v  302 (440)
                      |.+|++..+.. +..+.     .+....++-+|+|  +|+.+++. .|+++..||+++.+.       ....-.+|...|
T Consensus       146 i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~-------~~sI~dAHgq~v  217 (370)
T KOG1007|consen  146 IVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK-------NNSIEDAHGQRV  217 (370)
T ss_pred             eEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhh-------hcchhhhhccee
Confidence            77777766544 22221     1344566778988  77887776 589999999987651       223345688889


Q ss_pred             EEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEE-ecCCEEE
Q 013578          303 TWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAA-THGSTLQ  379 (440)
Q Consensus       303 ~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~-~~~~~i~  379 (440)
                      ..+.|+|+.+ +|++|+.||.|+|||.+..             ..++....+|...|.++.|+|.-. ++.+ |+|..|.
T Consensus       218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~t-------------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~  284 (370)
T KOG1007|consen  218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKT-------------KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVN  284 (370)
T ss_pred             eeccCCCCceEEEEEcCCCccEEEEeccCC-------------CccccccCCCceEEEEEEecCccceEEEecCCCceeE
Confidence            9999999876 5789999999999999854             235666778899999999999754 4444 5588888


Q ss_pred             EEEcCCcc-----------------------------chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578          380 WLSVETGK-----------------------------VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK  430 (440)
Q Consensus       380 i~d~~~~~-----------------------------~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~  430 (440)
                      +|...+-.                             .+.++ ..|++.|.+++|+.-.|       -++|+-+.||++.
T Consensus       285 Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty-dehEDSVY~~aWSsadP-------WiFASLSYDGRvi  356 (370)
T KOG1007|consen  285 LSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY-DEHEDSVYALAWSSADP-------WIFASLSYDGRVI  356 (370)
T ss_pred             EEeccccccccccccccccccCcchhhHHhcccccccccccc-cccccceEEEeeccCCC-------eeEEEeccCceEE
Confidence            88542210                             11233 46899999999998764       6888999999999


Q ss_pred             EEeCCC
Q 013578          431 LWLAPS  436 (440)
Q Consensus       431 vw~~~~  436 (440)
                      |=+++.
T Consensus       357 Is~V~r  362 (370)
T KOG1007|consen  357 ISSVPR  362 (370)
T ss_pred             eecCCh
Confidence            877654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.85  E-value=1.5e-20  Score=158.24  Aligned_cols=220  Identities=19%  Similarity=0.284  Sum_probs=167.4

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578           93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK  172 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~  172 (440)
                      .-.|++......|+++|+..+.|+|||+....     +.+...+|...|+++.+.....                     
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-----~hr~lkdh~stvt~v~YN~~De---------------------  134 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKL-----IHRFLKDHQSTVTYVDYNNTDE---------------------  134 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHH-----HhhhccCCcceeEEEEecCCcc---------------------
Confidence            34455554455899999999999999998432     4566667888888888865443                     


Q ss_pred             ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-CCc
Q 013578          173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-QLK  251 (440)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~  251 (440)
                                                                      ++++++..|.|.+..+.++.....+... ...
T Consensus       135 ------------------------------------------------yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs  166 (673)
T KOG4378|consen  135 ------------------------------------------------YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS  166 (673)
T ss_pred             ------------------------------------------------eeEEeccCCcEEEEecccCccccceecCCCCe
Confidence                                                            6777777888888888888777777654 344


Q ss_pred             ccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC-CEEEEEeCCCcEEEEecC
Q 013578          252 NNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQIITASKDGTLRVWNIN  329 (440)
Q Consensus       252 v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~  329 (440)
                      ++-+.|++..+ +|.+++.+|.|.+||+....       ....-...|..+...|+|+|.. .+|++.+.|..|.+||++
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~s-------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCC-------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            56889999765 45678899999999986544       1233456799999999999954 578899999999999998


Q ss_pred             ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578          330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                      ......       .+        ....+...++|+++|.+|+.|. .|.|..||++..+.......+|...|++++|-|.
T Consensus       240 s~~s~~-------~l--------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  240 SQASTD-------RL--------TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             cccccc-------ee--------eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            543221       11        1123467899999999999987 8999999998876554444799999999999886

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.2e-19  Score=141.86  Aligned_cols=275  Identities=19%  Similarity=0.225  Sum_probs=186.5

Q ss_pred             CCCCCCCCCcccCccc----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578           68 HSHGDKDQNKRHHPLD----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA  143 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~~----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~  143 (440)
                      .+.+..++.+-+|+..    -+.|.+|..+|.+++||+||+.|+|+|.|..|++||+..+...  +.++    ...+|..
T Consensus        38 lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l--~rir----f~spv~~  111 (405)
T KOG1273|consen   38 LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL--KRIR----FDSPVWG  111 (405)
T ss_pred             eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce--eEEE----ccCccce
Confidence            4566777777777664    4578899999999999999999999999999999999987632  2222    3489999


Q ss_pred             EEEccCCCeEEEEeecCCcceEEeecccc-ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578          144 VAFADNATSIVVATHNLSGCSLYMYGEEK-AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII  222 (440)
Q Consensus       144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  222 (440)
                      +.|+|.....++++--.....+..++... .........                      .........++.+.|+ ++
T Consensus       112 ~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~----------------------dln~sas~~~fdr~g~-yI  168 (405)
T KOG1273|consen  112 AQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDG----------------------DLNSSASHGVFDRRGK-YI  168 (405)
T ss_pred             eeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcc----------------------ccccccccccccCCCC-EE
Confidence            99999877666555332222222222111 000000000                      0001111224466777 99


Q ss_pred             EEeeCCceEEEEeCCCCceeeeeeCCC-CcccEEEecCCCCeEEEEecCCCEEEEEeEecCC-Cceeeeeeeeeeec--c
Q 013578          223 ASCSEGTDISIWHGKTGKLLGNVDTNQ-LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD-GLVKAVTSVMQLKG--H  298 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~--h  298 (440)
                      ++|...|.+.++|..+.+++..++... ..|..+.++..|++|+.-+.|..|+.|++..-.. +.-......+.++.  .
T Consensus       169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN  248 (405)
T KOG1273|consen  169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN  248 (405)
T ss_pred             EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence            999999999999999999998887655 6788999999999999999999999999862111 01011111122211  1


Q ss_pred             ccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCe-eeeeeEEeCCCCCEEEEecCC
Q 013578          299 KSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT-LQYDRLSLSSDGKILAATHGS  376 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~  376 (440)
                      +..-.+++|+.+|.+++.++ .-..++||.-..+..++       .+       .|.. .....+.|.|-...+++-..|
T Consensus       249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVK-------IL-------hG~kgE~l~DV~whp~rp~i~si~sg  314 (405)
T KOG1273|consen  249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVK-------IL-------HGTKGEELLDVNWHPVRPIIASIASG  314 (405)
T ss_pred             hhhhhheeecCCccEEEeccccceeEEEEecCCcceee-------ee-------cCCchhheeecccccceeeeeeccCC
Confidence            22345788999999988776 34579999988665432       11       1111 234568899999999998899


Q ss_pred             EEEEEEcCC
Q 013578          377 TLQWLSVET  385 (440)
Q Consensus       377 ~i~i~d~~~  385 (440)
                      .+++|....
T Consensus       315 ~v~iw~~~~  323 (405)
T KOG1273|consen  315 VVYIWAVVQ  323 (405)
T ss_pred             ceEEEEeec
Confidence            999998654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.84  E-value=2.6e-17  Score=133.91  Aligned_cols=238  Identities=20%  Similarity=0.273  Sum_probs=161.5

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE  170 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~  170 (440)
                      ...+..+.|+.|...|..|+.|| .++++.+....    + ......+..|..+-|+  ...++.++.+ ....+.+.+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k----~-~~~~~~~~~IvEmLFS--SSLvaiV~~~-qpr~Lkv~~~   75 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK----C-FSKDTEGVSIVEMLFS--SSLVAIVSIK-QPRKLKVVHF   75 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHH----h-hcccCCCeEEEEeecc--cceeEEEecC-CCceEEEEEc
Confidence            45677888999999999999998 68888775432    1 1111112233444444  4455555553 2344555444


Q ss_pred             ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC--
Q 013578          171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN--  248 (440)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--  248 (440)
                      .+.                           ..++....+..+....-++..|+.+-.+. |+|||+++.+.+.++..-  
T Consensus        76 Kk~---------------------------~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~  127 (391)
T KOG2110|consen   76 KKK---------------------------TTICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPP  127 (391)
T ss_pred             ccC---------------------------ceEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCC
Confidence            332                           12233332222222222333677777776 999999999999888643  


Q ss_pred             -CCcccEEEecCCCCeEEEEe--cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc-EE
Q 013578          249 -QLKNNMAAISPNGRFLAAAA--FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT-LR  324 (440)
Q Consensus       249 -~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~-i~  324 (440)
                       ...+.++.+++.+.+++.-+  ..|.|.+||...-+        .+..+..|++.+.+++|+++|.+|||+|..|+ ||
T Consensus       128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIR  199 (391)
T KOG2110|consen  128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIR  199 (391)
T ss_pred             CccceEeeccCCCCceEEecCCCCCceEEEEEcccce--------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEE
Confidence             33344555555666888654  46899999986554        77888899999999999999999999999987 79


Q ss_pred             EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578          325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET  385 (440)
Q Consensus       325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~  385 (440)
                      ++.+..+..+.+..+..            ....|.+++|+|++++|++.+ .++|++|.++.
T Consensus       200 Vf~v~~G~kl~eFRRG~------------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  200 VFSVPEGQKLYEFRRGT------------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEcCCccEeeeeeCCc------------eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            99999887664432222            245688999999999999865 68999998753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=1.9e-19  Score=147.33  Aligned_cols=215  Identities=15%  Similarity=0.163  Sum_probs=157.0

Q ss_pred             cccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           84 VNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      .-.+.||+++|..++|+| +...|||||.|.+|.||++..+...  .........+|...|..++|+|...         
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~---------  144 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP---------  144 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch---------
Confidence            345779999999999999 6678999999999999999765322  1122344556777777777776432         


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK  240 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  240 (440)
                                                                                 +.|++++.|.+|.+||+.+++
T Consensus       145 -----------------------------------------------------------NVLlsag~Dn~v~iWnv~tge  165 (472)
T KOG0303|consen  145 -----------------------------------------------------------NVLLSAGSDNTVSIWNVGTGE  165 (472)
T ss_pred             -----------------------------------------------------------hhHhhccCCceEEEEeccCCc
Confidence                                                                       278899999999999999999


Q ss_pred             eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc-eEEEEEcCCCCEEEEEe-
Q 013578          241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA-VTWLCFAPNSEQIITAS-  318 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~~-  318 (440)
                      .+.++. |...|.++.|+.||.+|++.+.|.+|+|||.+.+.        .+..-.+|.+. -..+.|-.+|..+-||- 
T Consensus       166 ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~--------~v~e~~~heG~k~~Raifl~~g~i~tTGfs  236 (472)
T KOG0303|consen  166 ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT--------VVSEGVAHEGAKPARAIFLASGKIFTTGFS  236 (472)
T ss_pred             eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc--------EeeecccccCCCcceeEEeccCceeeeccc
Confidence            988887 88999999999999999999999999999998776        55555667653 34456777888444442 


Q ss_pred             --CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-e-cCCEEEEEEcCCcc
Q 013578          319 --KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-T-HGSTLQWLSVETGK  387 (440)
Q Consensus       319 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~-~~~~i~i~d~~~~~  387 (440)
                        .+..+-+||.......    .....    +.    ....|.---|.+|..++.. | .|+.|+.|.+....
T Consensus       237 r~seRq~aLwdp~nl~eP----~~~~e----lD----tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  237 RMSERQIALWDPNNLEEP----IALQE----LD----TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cccccceeccCcccccCc----ceeEE----ec----cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence              5778999998754221    01110    11    1122444556788776654 3 48999999987655

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.1e-19  Score=150.05  Aligned_cols=315  Identities=13%  Similarity=0.157  Sum_probs=209.2

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC--CCeEEEEeecCC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN--ATSIVVATHNLS  161 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~~~~  161 (440)
                      ...|.+|.+.|+.|.|+..|..|++||.|..|.+||+.....    .+....+|...|..-.|.|.  .+.+++++.++.
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~----~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP----KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc----ccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            356889999999999999999999999999999999987653    45566678788888888874  456777776643


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                      ...-.+........             ......+.++..+          ...-|+....|.+++.|+.+.-+|++++..
T Consensus       211 vr~s~i~~t~~~e~-------------t~rl~~h~g~vhk----------lav~p~sp~~f~S~geD~~v~~~Dlr~~~p  267 (559)
T KOG1334|consen  211 VRVSEILETGYVEN-------------TKRLAPHEGPVHK----------LAVEPDSPKPFLSCGEDAVVFHIDLRQDVP  267 (559)
T ss_pred             eeeeeeccccceec-------------ceecccccCccce----------eeecCCCCCcccccccccceeeeeeccCCc
Confidence            33222222211110             0001111111111          112455555799999999999999988755


Q ss_pred             eeeee---CCCC---cccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCce----eeeeeeeeeeccccceEEEEEcCC
Q 013578          242 LGNVD---TNQL---KNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLV----KAVTSVMQLKGHKSAVTWLCFAPN  310 (440)
Q Consensus       242 ~~~~~---~~~~---~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~p~  310 (440)
                      ...+.   .+..   ....++.+|.. ..+++|+.|-.+++||.+.-.....    ..+.+-+-.....-.|++++|+.+
T Consensus       268 a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~  347 (559)
T KOG1334|consen  268 AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD  347 (559)
T ss_pred             cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC
Confidence            43332   2222   45677888855 5899999999999999875432111    111111111122346899999977


Q ss_pred             CCEEEEEeCCCcEEEEecCccccccCCCCccc---cccccccCCCCCeeeeeeEEe-CCCCCEEEEecC-CEEEEEEcCC
Q 013578          311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLK---VLPIPLLDSNGATLQYDRLSL-SSDGKILAATHG-STLQWLSVET  385 (440)
Q Consensus       311 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~-~~i~i~d~~~  385 (440)
                      +.-|.+.-.|-.|+++.-..+.-  ..+....   .+....+........|..+.| .|...|+++|+| |.|.||+-.+
T Consensus       348 ~sElLaSYnDe~IYLF~~~~~~G--~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t  425 (559)
T KOG1334|consen  348 GSELLASYNDEDIYLFNKSMGDG--SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT  425 (559)
T ss_pred             ccceeeeecccceEEeccccccC--CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence            76666666788899994432211  1111111   111112333333444666765 688899999998 9999999999


Q ss_pred             ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          386 GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       386 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ++.+..++ +-..-|+|+.-+|-.        .+||++|-|.-|+||...+
T Consensus       426 ~eii~~Me-gDr~VVNCLEpHP~~--------PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  426 GEIIRFME-GDRHVVNCLEPHPHL--------PVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             hHHHHHhh-cccceEeccCCCCCC--------chhhccCCccceeeecCCc
Confidence            99999885 555589999999998        7999999999999998743

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.83  E-value=6.5e-21  Score=169.96  Aligned_cols=246  Identities=19%  Similarity=0.273  Sum_probs=187.8

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      -++.|.||.++|+|+.|...|.+++||+.|..++||..++..     ++....+|.+.++.++.+.+..           
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----~lAs~rGhs~ditdlavs~~n~-----------  245 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----CLASCRGHSGDITDLAVSSNNT-----------  245 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----hhccCCCCccccchhccchhhh-----------
Confidence            356788999999999999999999999999999999987664     4556678888888887654432           


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                                                                                ++++++.|..|++|.+.++.++
T Consensus       246 ----------------------------------------------------------~iaaaS~D~vIrvWrl~~~~pv  267 (1113)
T KOG0644|consen  246 ----------------------------------------------------------MIAAASNDKVIRVWRLPDGAPV  267 (1113)
T ss_pred             ----------------------------------------------------------hhhhcccCceEEEEecCCCchH
Confidence                                                                      6888899999999999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~  322 (440)
                      ..+.+|.+.|++++|+|-.    +.+.||++++||.+......  .. ....+. ....+-++.|..++..++|++.|+.
T Consensus       268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y--~p-rp~~~~-~~~~~~s~~~~~~~~~f~Tgs~d~e  339 (1113)
T KOG0644|consen  268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIY--VP-RPLKFT-EKDLVDSILFENNGDRFLTGSRDGE  339 (1113)
T ss_pred             HHHhccccceeeeccCccc----cCCCCCceEecccccccccc--CC-CCCCcc-cccceeeeeccccccccccccCCcc
Confidence            9999999999999999964    77889999999987322000  00 001111 2355777888888899999999999


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEEEe-cCCEEEEEEcCCccchhhhhccccCCe
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEI  400 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v  400 (440)
                      -..|.+......                    ...+.-+.++.+- .+.+++ .+-.+.+|++.+|+.++.+ .+|...+
T Consensus       340 a~n~e~~~l~~~--------------------~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-~ghsd~~  398 (1113)
T KOG0644|consen  340 ARNHEFEQLAWR--------------------SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-MGHSDEV  398 (1113)
T ss_pred             cccchhhHhhhh--------------------ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh-cccccce
Confidence            999987632110                    0001112222222 233333 3678899999999999998 6999999


Q ss_pred             EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ..+.++|-++       +...+++.||...|||+-.+.
T Consensus       399 yvLd~Hpfn~-------ri~msag~dgst~iwdi~eg~  429 (1113)
T KOG0644|consen  399 YVLDVHPFNP-------RIAMSAGYDGSTIIWDIWEGI  429 (1113)
T ss_pred             eeeeecCCCc-------HhhhhccCCCceEeeecccCC
Confidence            9999999874       677899999999999997664

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.83  E-value=1.7e-18  Score=138.24  Aligned_cols=266  Identities=16%  Similarity=0.225  Sum_probs=172.9

Q ss_pred             CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      .-...+.|+|||.-|++.+.+   ..+.+|+................ .....+  +......+.........-...|+.
T Consensus        50 nf~kgckWSPDGSciL~~sed---n~l~~~nlP~dlys~~~~~~~~~-~~~~~~--r~~eg~tvydy~wYs~M~s~qP~t  123 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSED---NCLNCWNLPFDLYSKKADGPLNF-SKHLSY--RYQEGETVYDYCWYSRMKSDQPST  123 (406)
T ss_pred             hhhccceeCCCCceEEeeccc---CeeeEEecChhhcccCCCCcccc-ccceeE--EeccCCEEEEEEeeeccccCCCcc
Confidence            345578999999999999887   45555554333222211110000 000000  111111112222222222334455


Q ss_pred             CeEEEEeeCCceEEEEeCCCCceeeeeeC--CCC---cccEEEecCCCCeEEEEecCCCEEEEEe-EecCCCceeeeeee
Q 013578          219 STIIASCSEGTDISIWHGKTGKLLGNVDT--NQL---KNNMAAISPNGRFLAAAAFTADVKVWEI-VYSKDGLVKAVTSV  292 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~  292 (440)
                      . ++++.+.+.-|++||.-+|+....+..  |..   ...+++|+|||..|++|. ...|++||+ +.+.+...... ..
T Consensus       124 ~-l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t-~~  200 (406)
T KOG2919|consen  124 N-LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT-VT  200 (406)
T ss_pred             c-eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh-hh
Confidence            4 888999999999999999988766643  222   345799999999998875 778999998 43332111000 01


Q ss_pred             eeeeccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          293 MQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                      ..-.+..+-|.+++|+|- ...++.++.-.++-||.-..+..              .....+|...|+.+.|.++|..|.
T Consensus       201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p--------------l~llggh~gGvThL~~~edGn~lf  266 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP--------------LQLLGGHGGGVTHLQWCEDGNKLF  266 (406)
T ss_pred             cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc--------------eeeecccCCCeeeEEeccCcCeec
Confidence            112234677899999994 45899999888888887654432              233447888899999999999999


Q ss_pred             Eec--CCEEEEEEcCC-ccchhhhhccccC-CeEEEEe--cCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          372 ATH--GSTLQWLSVET-GKVLDTAEKAHEG-EITCMAW--APKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       372 ~~~--~~~i~i~d~~~-~~~~~~~~~~h~~-~v~~v~~--~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +|.  +..|..||++. ..++..+. .|.+ .=..|-|  .|++        ++|++|+.||.|++||+..
T Consensus       267 sGaRk~dkIl~WDiR~~~~pv~~L~-rhv~~TNQRI~FDld~~~--------~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  267 SGARKDDKILCWDIRYSRDPVYALE-RHVGDTNQRILFDLDPKG--------EILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             ccccCCCeEEEEeehhccchhhhhh-hhccCccceEEEecCCCC--------ceeeccCCCccEEEEecCC
Confidence            987  78999999976 45677774 6665 3344544  4666        8999999999999999987

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.83  E-value=5.1e-19  Score=150.52  Aligned_cols=173  Identities=16%  Similarity=0.271  Sum_probs=139.5

Q ss_pred             cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578          212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                      .-+++||. -|++.++||.|++|. ++|....++.....+|.|++|.|+.+.++.+. .+.+.|=.+....        .
T Consensus       110 gRW~~dGt-gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~--------k  178 (737)
T KOG1524|consen  110 GRWSPDGA-GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANS--------K  178 (737)
T ss_pred             cccCCCCc-eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeeccccc--------c
Confidence            34578888 889999999999998 45655555656677899999999887666553 4667776654333        5


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                      +...++|.+-|.++.|+|..+.+++|++|-..++||-...               +++....|..+|++++|.|+ +.++
T Consensus       179 ~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~---------------~Lf~S~~~ey~ITSva~npd-~~~~  242 (737)
T KOG1524|consen  179 IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA---------------NLFTSAAEEYAITSVAFNPE-KDYL  242 (737)
T ss_pred             eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc---------------ccccCChhccceeeeeeccc-ccee
Confidence            6778999999999999999999999999999999998643               34556678888999999999 7777


Q ss_pred             EecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEE
Q 013578          372 ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL  431 (440)
Q Consensus       372 ~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~v  431 (440)
                      .++-+.++            +.+...+.|..++|++||        .+++.|...|.+.+
T Consensus       243 v~S~nt~R------------~~~p~~GSifnlsWS~DG--------TQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  243 LWSYNTAR------------FSSPRVGSIFNLSWSADG--------TQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeeeee------------ecCCCccceEEEEEcCCC--------ceeeccccCceEEE
Confidence            77766666            345678899999999999        89999998888765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=6.5e-19  Score=144.26  Aligned_cols=267  Identities=14%  Similarity=0.142  Sum_probs=187.6

Q ss_pred             CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcc--eeeEEecCCCCCCCceEEEccCCCeEEEEe
Q 013578           80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKS--FKFLRINLPPGGPPTAVAFADNATSIVVAT  157 (440)
Q Consensus        80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  157 (440)
                      .+.+.+-+.+|.+.|+++.||.++++|++|+.|..++||+++..-...  ........+|...|.+++|....+      
T Consensus        45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~------  118 (609)
T KOG4227|consen   45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR------  118 (609)
T ss_pred             cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe------
Confidence            456677889999999999999999999999999999999987432111  111222334556778888754322      


Q ss_pred             ecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC
Q 013578          158 HNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK  237 (440)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~  237 (440)
                                                                                     .+++|..+++|.+-|++
T Consensus       119 ---------------------------------------------------------------~~~SG~~~~~VI~HDiE  135 (609)
T KOG4227|consen  119 ---------------------------------------------------------------FLYSGERWGTVIKHDIE  135 (609)
T ss_pred             ---------------------------------------------------------------eEecCCCcceeEeeecc
Confidence                                                                           78899999999999999


Q ss_pred             CCceeeeeeC--CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC-CEE
Q 013578          238 TGKLLGNVDT--NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQI  314 (440)
Q Consensus       238 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l  314 (440)
                      +.+.+..+..  ..+.|..+..+|..+.|++.+.++.|.+||.+.....    . ....+.........+.|+|.. .+|
T Consensus       136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~----~-~~~~~AN~~~~F~t~~F~P~~P~Li  210 (609)
T KOG4227|consen  136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP----I-SLVLPANSGKNFYTAEFHPETPALI  210 (609)
T ss_pred             cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC----C-ceeeecCCCccceeeeecCCCceeE
Confidence            9988776643  3457899999999999999999999999999866521    1 111222234556788999965 467


Q ss_pred             EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhh
Q 013578          315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAE  393 (440)
Q Consensus       315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~  393 (440)
                      ++.+..+-+-+||++.....-.....       .............+.|+|+|..+.+-. ...-.+||+.+.++..- +
T Consensus       211 ~~~~~~~G~~~~D~R~~~~~~~~~~~-------~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~-k  282 (609)
T KOG4227|consen  211 LVNSETGGPNVFDRRMQARPVYQRSM-------FKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL-K  282 (609)
T ss_pred             EeccccCCCCceeeccccchHHhhhc-------cccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE-e
Confidence            88888899999999854321100000       001111122345688999999777654 45556778877554321 1


Q ss_pred             cccc-------CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          394 KAHE-------GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       394 ~~h~-------~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ..|.       ..+.+++|..|         .-++||+.+-.|.+|.++..
T Consensus       283 ~D~N~~GY~N~~T~KS~~F~~D---------~~v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  283 SDHNPNGYCNIKTIKSMTFIDD---------YTVATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             ccCCCCcceeeeeeeeeeeecc---------eeeeccCcccceEEEecCCC
Confidence            2233       25778899888         56999999999999999753

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.2e-18  Score=144.12  Aligned_cols=200  Identities=18%  Similarity=0.251  Sum_probs=151.9

Q ss_pred             cccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578          210 SATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV  289 (440)
Q Consensus       210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  289 (440)
                      ..+.+.++|. .+++++.||++|+|+..+...+.....|...|.++.|+|||++|++-+.| ..+||+.+.+.       
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~-------  218 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA-------  218 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-------
Confidence            3455677888 99999999999999988887777777888999999999999999999999 99999998774       


Q ss_pred             eeeeeee--ccccceEEEEEcCCC---CE--EEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          290 TSVMQLK--GHKSAVTWLCFAPNS---EQ--IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       290 ~~~~~~~--~h~~~v~~~~~~p~~---~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                       .+....  ........+.|+.++   .+  ++....-+.|+.||+.....-       ..+  ...........|++++
T Consensus       219 -~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-------~~l--~~~~~~~~~~siSsl~  288 (398)
T KOG0771|consen  219 -ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-------NFL--RLRKKIKRFKSISSLA  288 (398)
T ss_pred             -hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-------ccc--chhhhhhccCcceeEE
Confidence             222222  223345567787766   22  233334566777777533210       000  0111112223588999


Q ss_pred             eCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          363 LSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       363 ~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      .++||+++|.|. +|.|-|++..+.+.++..+..|...|+.+.|+|+.        +++++.+.|....|..+.-
T Consensus       289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds--------r~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS--------RYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc--------CcccccccCCceeEEEEee
Confidence            999999999987 99999999999999998889999999999999998        8999999999988887754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=7.2e-19  Score=146.62  Aligned_cols=256  Identities=14%  Similarity=0.129  Sum_probs=178.3

Q ss_pred             CCCCCceEEEccCCC-eEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC
Q 013578          137 PGGPPTAVAFADNAT-SIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT  215 (440)
Q Consensus       137 ~~~~v~~v~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (440)
                      +.+.|++++|+|... .+++++..+  ..+-+|+........         .....+          ........++.|+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~--G~VG~Wn~~~~~~d~---------d~v~~f----------~~hs~~Vs~l~F~  243 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKG--GQVGLWNFGTQEKDK---------DGVYLF----------TPHSGPVSGLKFS  243 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCC--CcEEEEecCCCCCcc---------CceEEe----------ccCCccccceEec
Confidence            458899999999877 666666654  344445443110000         000011          0111123445567


Q ss_pred             CCCCeEEEEeeCCceEEEEeCCCCce--eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578          216 ADGSTIIASCSEGTDISIWHGKTGKL--LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       216 ~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      |.+...+++.+.||+|++-|++....  +.........+..+.|+.+...++.+..=|...+||++..+.       ...
T Consensus       244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s-------~~~  316 (498)
T KOG4328|consen  244 PANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS-------EYE  316 (498)
T ss_pred             CCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc-------cch
Confidence            77777999999999999999987643  334433455567788888888888888888999999998772       355


Q ss_pred             eeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          294 QLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       294 ~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                      .+.-|...|.+|+++|... +|+|+|.|++.+|||++.......          ++.....|...|.++.|||.+--|++
T Consensus       317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----------p~lst~~HrrsV~sAyFSPs~gtl~T  386 (498)
T KOG4328|consen  317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----------PFLSTLPHRRSVNSAYFSPSGGTLLT  386 (498)
T ss_pred             hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----------cceecccccceeeeeEEcCCCCceEe
Confidence            5667888999999999665 689999999999999985432110          24455577888999999998665665


Q ss_pred             -ecCCEEEEEEcC----Cccchhhhhcccc----CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          373 -THGSTLQWLSVE----TGKVLDTAEKAHE----GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       373 -~~~~~i~i~d~~----~~~~~~~~~~~h~----~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                       +.|..|+|||..    .-..+..+...+.    -......|.|+.        .+++.|-.-..|-|+|-..++
T Consensus       387 T~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~--------~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  387 TCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY--------NLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             eccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc--------cEEEEeccCcceeEEcCCCCE
Confidence             669999999983    3344444431111    135567899997        899999988889999987765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=5.4e-17  Score=142.69  Aligned_cols=285  Identities=12%  Similarity=0.143  Sum_probs=166.9

Q ss_pred             EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCC
Q 013578          107 ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLP  186 (440)
Q Consensus       107 ~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (440)
                      ++...|+.|.+|++.+...  ....... ...+.+..++++|++++|++++...  ..+..|+........   ..    
T Consensus         6 ~~~~~~~~I~~~~~~~~g~--l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~--~~i~~~~~~~~g~l~---~~----   73 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGA--LTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPE--FRVLSYRIADDGALT---FA----   73 (330)
T ss_pred             EEcCCCCCEEEEEECCCCc--eeeeeEE-ecCCCCccEEECCCCCEEEEEECCC--CcEEEEEECCCCceE---Ee----
Confidence            3446799999999964321  1122222 2346678899999999998876542  333333322100000   00    


Q ss_pred             CCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-c---eeeeeeCCCCcccEEEecCCCC
Q 013578          187 GPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-K---LLGNVDTNQLKNNMAAISPNGR  262 (440)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~---~~~~~~~~~~~v~~~~~s~~~~  262 (440)
                                    ........+..+.++|+++.++++...++.|.+|++.+. .   .+..+.. .....+++++|+++
T Consensus        74 --------------~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~  138 (330)
T PRK11028         74 --------------AESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNR  138 (330)
T ss_pred             --------------eeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCC
Confidence                          000000112345568899955555556889999998643 2   2222222 23456788999999


Q ss_pred             eEEEEe-cCCCEEEEEeEecCCCceeee-eeeeeeeccccceEEEEEcCCCCEEEEEeC-CCcEEEEecCccc-cccCCC
Q 013578          263 FLAAAA-FTADVKVWEIVYSKDGLVKAV-TSVMQLKGHKSAVTWLCFAPNSEQIITASK-DGTLRVWNINVRY-HLDEDP  338 (440)
Q Consensus       263 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-dg~i~iwd~~~~~-~~~~~~  338 (440)
                      ++++++ .++.|.+||+....  ..... ........ ......++|+|+|++++++.. +++|.+|+++... .+    
T Consensus       139 ~l~v~~~~~~~v~v~d~~~~g--~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~----  211 (330)
T PRK11028        139 TLWVPCLKEDRIRLFTLSDDG--HLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI----  211 (330)
T ss_pred             EEEEeeCCCCEEEEEEECCCC--cccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE----
Confidence            887665 46899999996522  11000 00111111 234678999999999988876 8999999997321 10    


Q ss_pred             CccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhccc---cCCeEEEEecCCCCCCC
Q 013578          339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKAH---EGEITCMAWAPKTIPMG  413 (440)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~~  413 (440)
                      .....+....... ........+.++|+|++++++.  ++.|.+|++........+. +|   ......+.|+|++    
T Consensus       212 ~~~~~~~~~p~~~-~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~-~~~~~~~~p~~~~~~~dg----  285 (330)
T PRK11028        212 ECVQTLDMMPADF-SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE-GHQPTETQPRGFNIDHSG----  285 (330)
T ss_pred             EEEEEEecCCCcC-CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe-EEEeccccCCceEECCCC----
Confidence            0000000000000 0111233588999999998874  6899999986543211111 12   1245689999998    


Q ss_pred             CCcceEEEEeeC-CCeEEEEeCC
Q 013578          414 NQQVSVLATSSV-DKKVKLWLAP  435 (440)
Q Consensus       414 ~~~~~~l~t~~~-Dg~i~vw~~~  435 (440)
                          ++|+++.. +++|.+|+++
T Consensus       286 ----~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        286 ----KYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             ----CEEEEEEccCCcEEEEEEc
Confidence                77776665 8999999875

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.81  E-value=7.5e-18  Score=151.26  Aligned_cols=257  Identities=17%  Similarity=0.204  Sum_probs=175.4

Q ss_pred             CcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCc-ceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578           91 GDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSK-SFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY  168 (440)
Q Consensus        91 ~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~  168 (440)
                      ...|.|++|+| +..+||.|..+|.|.+||+..+... ..........|..++..+.|..+.                  
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~------------------  303 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE------------------  303 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC------------------
Confidence            67899999999 6778899999999999999876543 122222334455566666665421                  


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce-ee----
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL-LG----  243 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~----  243 (440)
                                                                      .+ .-+++++.||.|..|+++.-.. ..    
T Consensus       304 ------------------------------------------------~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~  334 (555)
T KOG1587|consen  304 ------------------------------------------------HN-TEFFSLSSDGSICSWDTDMLSLPVEGLLL  334 (555)
T ss_pred             ------------------------------------------------CC-CceEEEecCCcEeeeeccccccchhhccc
Confidence                                                            11 1578888899999998764322 11    


Q ss_pred             -eee------CCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578          244 -NVD------TNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       244 -~~~------~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  315 (440)
                       ...      .....++++.|.+ +.+.|++|+++|.|.--..................+..|.++|.++.++|=+..++
T Consensus       335 ~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f  414 (555)
T KOG1587|consen  335 ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF  414 (555)
T ss_pred             ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence             111      1234567888887 56789999999988763322221111112233446677899999999999777665


Q ss_pred             EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec-CCEEEEEEcCCcc--chhh
Q 013578          316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH-GSTLQWLSVETGK--VLDT  391 (440)
Q Consensus       316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~i~i~d~~~~~--~~~~  391 (440)
                      ..+.|.+|+||.....             ..++.....+...+++++|||-.. .+++++ +|.|.+||+....  +...
T Consensus       415 ls~gDW~vriWs~~~~-------------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s  481 (555)
T KOG1587|consen  415 LSVGDWTVRIWSEDVI-------------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS  481 (555)
T ss_pred             eeeccceeEeccccCC-------------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence            5555999999987621             112333344455589999999987 444555 8999999986543  3444


Q ss_pred             hhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          392 AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       392 ~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      . ..+....+.+.|++.+        +.|+.|...|++.+|++..
T Consensus       482 ~-~~~~~~l~~~~~s~~g--------~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  482 Q-KVCSPALTRVRWSPNG--------KLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             c-cccccccceeecCCCC--------cEEEEecCCCcEEEEEcCc
Confidence            3 2346677888999988        8999999999999999963

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.7e-17  Score=152.27  Aligned_cols=307  Identities=14%  Similarity=0.218  Sum_probs=197.4

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEcc--CCCeEEEEeecCCcceEEeec
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFAD--NATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      .+-..+.|+|=...++++...-.|+|||.+.+...  ............|+.+.+..  |...+++++.|   ..+++|.
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l--~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d---GvIRIwk 1139 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL--NGFDNGAFPDTRVSDLELINEQDDALLLTASSD---GVIRIWK 1139 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCcee--ccccCCCCCCCccceeeeecccchhheeeeccC---ceEEEec
Confidence            34567888888888999887778999999876531  12222223446788888865  45577777777   4666766


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-  248 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-  248 (440)
                      .......        .+..+..|.........    ..+...++.......+|+++++-..|+|||......+..+... 
T Consensus      1140 ~y~~~~~--------~~eLVTaw~~Ls~~~~~----~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s 1207 (1387)
T KOG1517|consen 1140 DYADKWK--------KPELVTAWSSLSDQLPG----ARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS 1207 (1387)
T ss_pred             ccccccC--------CceeEEeeccccccCcc----CCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC
Confidence            5433210        00001111111100000    0000000001111115666666888999999987777766543 


Q ss_pred             CCcccEEEec-CCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc--eEEEEEcCCCCE-EEEEeCCCcEE
Q 013578          249 QLKNNMAAIS-PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA--VTWLCFAPNSEQ-IITASKDGTLR  324 (440)
Q Consensus       249 ~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~p~~~~-l~s~~~dg~i~  324 (440)
                      ...++++.-+ ..|+.+++|..||.|++||.+.....     ..+...+.|+..  |..+.+.++|-- |++|+.||.|+
T Consensus      1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-----s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-----SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred             CccceeecccccCCceEEEeecCCceEEeecccCCcc-----ccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence            3345555433 34799999999999999999865421     256677788887  999999987754 99999999999


Q ss_pred             EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhh------ccccC
Q 013578          325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE------KAHEG  398 (440)
Q Consensus       325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~------~~h~~  398 (440)
                      +||++.....       ....+......|  ...+++..+++..++|+|+.+.|.||++...+ +..+.      ....+
T Consensus      1283 ~~DlR~~~~e-------~~~~iv~~~~yG--s~lTal~VH~hapiiAsGs~q~ikIy~~~G~~-l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1283 LLDLRMSSKE-------TFLTIVAHWEYG--SALTALTVHEHAPIIASGSAQLIKIYSLSGEQ-LNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred             EEecccCccc-------ccceeeeccccC--ccceeeeeccCCCeeeecCcceEEEEecChhh-hcccccCcccccCcCC
Confidence            9999963110       111111111111  13778999999999999999999999986433 33221      12345


Q ss_pred             CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .+.|++|+|-.        -+||.|+.|.+|.||..+..+
T Consensus      1353 s~scL~FHP~~--------~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1353 SVSCLAFHPHR--------LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             Ccceeeecchh--------HhhhhccCCceEEEeecCCcC
Confidence            78999999987        788999999999999987654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=1.3e-18  Score=149.88  Aligned_cols=287  Identities=15%  Similarity=0.133  Sum_probs=200.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCC--EEEEeeCCCcEEEEecCCCC-----
Q 013578           56 PISKKSHSKPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGK--CLATACADGVIRVHKLDDAS-----  124 (440)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~--~l~t~s~dg~v~vW~~~~~~-----  124 (440)
                      ....+.+++..-.++++.++++|+|..    ++++.. -.+.|.|++|+|.+.  .||.+-.+ .+-|-+..-+.     
T Consensus       403 Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~  480 (733)
T KOG0650|consen  403 VRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVG  480 (733)
T ss_pred             EEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhhc
Confidence            334556667777889999999999975    444443 356899999999765  34443322 23333321110     


Q ss_pred             -------------C--------------cceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccc
Q 013578          125 -------------S--------------KSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTN  177 (440)
Q Consensus       125 -------------~--------------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  177 (440)
                                   .              ....-+.....|...|..+.|+..|.||+++..++....+.+.+..+.....
T Consensus       481 ~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~  560 (733)
T KOG0650|consen  481 PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQS  560 (733)
T ss_pred             chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccC
Confidence                         0              0001123445567889999999999999999999888888888877664333


Q ss_pred             cccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEe
Q 013578          178 EGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI  257 (440)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  257 (440)
                      ........                       +..+.|.|... +|+.++.. .|++||+...+.++.+.....-+..+++
T Consensus       561 PF~kskG~-----------------------vq~v~FHPs~p-~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msi  615 (733)
T KOG0650|consen  561 PFRKSKGL-----------------------VQRVKFHPSKP-YLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSI  615 (733)
T ss_pred             chhhcCCc-----------------------eeEEEecCCCc-eEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeee
Confidence            22211111                       11122344444 55555554 4999999988888888777778999999


Q ss_pred             cCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCC
Q 013578          258 SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDED  337 (440)
Q Consensus       258 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~  337 (440)
                      +|.|.-|++|+.|+++..||+....       .....+.-|...|++++||+.-.+|++|+.||++.|+.-.-...+.++
T Consensus       616 hp~GDnli~gs~d~k~~WfDldlss-------kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qn  688 (733)
T KOG0650|consen  616 HPNGDNLILGSYDKKMCWFDLDLSS-------KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQN  688 (733)
T ss_pred             cCCCCeEEEecCCCeeEEEEcccCc-------chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcC
Confidence            9999999999999999999997664       356778889999999999999999999999999999865433222222


Q ss_pred             CCccccccccccCCCCCeee----eeeEEeCCCCCEEEEe-cCCEEEEE
Q 013578          338 PKTLKVLPIPLLDSNGATLQ----YDRLSLSSDGKILAAT-HGSTLQWL  381 (440)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~g~~l~~~-~~~~i~i~  381 (440)
                      +..     .++....+|...    |..+.|+|...+|.++ .||.|++|
T Consensus       689 pli-----VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  689 PLI-----VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             Cce-----EeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            221     233334444443    8889999999988875 58999998

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.81  E-value=1e-17  Score=137.25  Aligned_cols=188  Identities=17%  Similarity=0.242  Sum_probs=143.5

Q ss_pred             EEEEeeCCceEEEEeCCCC-------ceeeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTG-------KLLGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                      .+++|++|.+|.||++..+       +++..+.+|...|..++|+|. .+.|++++.|.+|.+|++.++.        .+
T Consensus        96 vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--------al  167 (472)
T KOG0303|consen   96 VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--------AL  167 (472)
T ss_pred             eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--------ee
Confidence            7999999999999998754       346678899999999999995 5789999999999999998876        45


Q ss_pred             eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                      ..+. |.+.|.++.|+-||.+|++.+.|..|||||.+++..+.+...           ..|  ..-..+.|-.+|.++.+
T Consensus       168 i~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~-----------heG--~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  168 ITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA-----------HEG--AKPARAIFLASGKIFTT  233 (472)
T ss_pred             eecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc-----------ccC--CCcceeEEeccCceeee
Confidence            5566 999999999999999999999999999999998766543210           111  11235778888987777


Q ss_pred             ec----CCEEEEEEcCCccchhhhh-ccccCCeEEEEecCCCCCCCCCcceEEE-EeeCCCeEEEEeCCCCC
Q 013578          373 TH----GSTLQWLSVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVSVLA-TSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       373 ~~----~~~i~i~d~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~~Dg~i~vw~~~~~~  438 (440)
                      |.    +..+-+||...-+....+. -..+..|.=--|.+|.        .++. +|-.|+.||.|.+.+..
T Consensus       234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt--------~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT--------SIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC--------CEEEEEecCCcceEEEEecCCC
Confidence            63    6789999987655432221 1234456666677776        4554 55569999999998755

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.5e-18  Score=148.07  Aligned_cols=237  Identities=15%  Similarity=0.160  Sum_probs=164.9

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      ...|.||++.|+|++|+.||.+|++||.|-.+.|||.-..+    .+..+..+|...|.++.|.|...            
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K----llhsI~TgHtaNIFsvKFvP~tn------------  106 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK----LLHSISTGHTANIFSVKFVPYTN------------  106 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc----eeeeeecccccceeEEeeeccCC------------
Confidence            45799999999999999999999999999999999987432    24566778889999999988532            


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-----
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-----  238 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-----  238 (440)
                                                                             ..++++|..|..|+++|+..     
T Consensus       107 -------------------------------------------------------nriv~sgAgDk~i~lfdl~~~~~~~  131 (758)
T KOG1310|consen  107 -------------------------------------------------------NRIVLSGAGDKLIKLFDLDSSKEGG  131 (758)
T ss_pred             -------------------------------------------------------CeEEEeccCcceEEEEecccccccc
Confidence                                                                   12789999999999999874     


Q ss_pred             -----CceeeeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceee--eeeeeeeeccccceEEEEEcCC
Q 013578          239 -----GKLLGNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKA--VTSVMQLKGHKSAVTWLCFAPN  310 (440)
Q Consensus       239 -----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~p~  310 (440)
                           .+....+..|...|..++..|++ +.+.++++||+|+-||++.........  ...+..+....-...|++.+|.
T Consensus       132 ~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~  211 (758)
T KOG1310|consen  132 MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPS  211 (758)
T ss_pred             cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCC
Confidence                 23445566788889999999988 899999999999999998643211110  0011112222234678999995


Q ss_pred             C-CEEEEEeCCCcEEEEecCccccccCCC-----------Ccccccc-ccccCCCC----CeeeeeeEEeCCCCCEEEEe
Q 013578          311 S-EQIITASKDGTLRVWNINVRYHLDEDP-----------KTLKVLP-IPLLDSNG----ATLQYDRLSLSSDGKILAAT  373 (440)
Q Consensus       311 ~-~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~----~~~~v~~~~~s~~g~~l~~~  373 (440)
                      . .+|+.|+.|-..++||.+.........           .+...+. .......+    ....++-++|+|+|.-|.+.
T Consensus       212 rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs  291 (758)
T KOG1310|consen  212 RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVS  291 (758)
T ss_pred             CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEe
Confidence            5 478999999999999965322111100           0111110 00101111    11235678999999866665


Q ss_pred             -cCCEEEEEEcCCccchhh
Q 013578          374 -HGSTLQWLSVETGKVLDT  391 (440)
Q Consensus       374 -~~~~i~i~d~~~~~~~~~  391 (440)
                       +...|+++|+..++....
T Consensus       292 ~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  292 WGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             eCCeEEEEEeecCCCCcee
Confidence             467899999988775443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.2e-17  Score=143.40  Aligned_cols=288  Identities=17%  Similarity=0.253  Sum_probs=193.8

Q ss_pred             ccCcceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE-EEccCCCeEEEEeecCCcceEE
Q 013578           89 GHGDSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV-AFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v-~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      +|...-+.|..+|||+|+ |||-+--.|++||+......      ........+..+ -.+.|-..++....|   ..|.
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK------FERhlDae~V~feiLsDD~SK~v~L~~D---R~Ie  119 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK------FERHLDAEVVDFEILSDDYSKSVFLQND---RTIE  119 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceee------eeecccccceeEEEeccchhhheEeecC---ceee
Confidence            588899999999999985 56667889999999875432      111112333222 233333332222222   1111


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD  246 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  246 (440)
                      +..                         ..+.....-...++....+..+...  |+.++....|+-++++.|..+..+.
T Consensus       120 fHa-------------------------k~G~hy~~RIP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~  172 (703)
T KOG2321|consen  120 FHA-------------------------KYGRHYRTRIPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFE  172 (703)
T ss_pred             ehh-------------------------hcCeeeeeecCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccc
Confidence            110                         0001111111111111112223333  3344444559999999999999998


Q ss_pred             CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc-----ceEEEEEcCCCCEEEEEeCCC
Q 013578          247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS-----AVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      .....+.++.+++...+|++|+.+|.|..||.+....-.  ..........|.+     .|+++.|+.+|-.+++|+.+|
T Consensus       173 ~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~--~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G  250 (703)
T KOG2321|consen  173 TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG--TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG  250 (703)
T ss_pred             cccccceeeeecCccceEEecccCceEEEecchhhhhhe--eeecccccCCCccccccCcceEEEecCCceeEEeeccCC
Confidence            888899999999999999999999999999987654211  1111122223333     499999999999999999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC--CCEEEEecCCEEEEEEcCCccchhhhhccccCC
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD--GKILAATHGSTLQWLSVETGKVLDTAEKAHEGE  399 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~  399 (440)
                      .|.|||+++...+.             ....+...+|..+.|.+.  +..+++.+...++|||-.+|+....++  ....
T Consensus       251 ~v~iyDLRa~~pl~-------------~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE--pt~~  315 (703)
T KOG2321|consen  251 SVLIYDLRASKPLL-------------VKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE--PTSD  315 (703)
T ss_pred             cEEEEEcccCCcee-------------ecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc--ccCC
Confidence            99999999765432             223344566778888766  457778888899999999999999886  4556


Q ss_pred             eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          400 ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       400 v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ++.+++-|++        .+++++-+++.+..|=++..
T Consensus       316 lND~C~~p~s--------Gm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  316 LNDFCFVPGS--------GMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             cCceeeecCC--------ceEEEecCCCcceeEEcccc
Confidence            9999999998        79999999998888877654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=1.1e-16  Score=147.50  Aligned_cols=250  Identities=28%  Similarity=0.522  Sum_probs=185.5

Q ss_pred             cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC-CCCCCceEEE-ccCCCeEEEEeecCCcc
Q 013578           86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP-PGGPPTAVAF-ADNATSIVVATHNLSGC  163 (440)
Q Consensus        86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~-~~~~v~~v~~-~~~~~~l~~~~~~~~~~  163 (440)
                      .+.+|...|.++.+.+++..++.++.|+.+.+|+......    ....... +...+..+.+ .++              
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--------------  121 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----LIKSLEGLHDSSVSKLALSSPD--------------  121 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce----eEEEEeccCCCceeeEEEECCC--------------
Confidence            5678999999999999999999999999999999886530    1111111 1112222222 111              


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE-eeCCceEEEEeCCC-Cce
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS-CSEGTDISIWHGKT-GKL  241 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~vwd~~~-~~~  241 (440)
                                                                            +...++. +..|+.+.+|+... ...
T Consensus       122 ------------------------------------------------------~~~~~~~~~~~d~~~~~~~~~~~~~~  147 (466)
T COG2319         122 ------------------------------------------------------GNSILLASSSLDGTVKLWDLSTPGKL  147 (466)
T ss_pred             ------------------------------------------------------cceEEeccCCCCccEEEEEecCCCeE
Confidence                                                                  1113444 34488999999998 778


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASK  319 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~  319 (440)
                      ...+..|...+..++|+|++..+++++. |+.+++|++....        .+..+.+|...|.+++|+|++. .+++++.
T Consensus       148 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  219 (466)
T COG2319         148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--------PLSTLAGHTDPVSSLAFSPDGGLLIASGSS  219 (466)
T ss_pred             EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--------eEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence            8888899999999999999999998886 9999999987643        5667777999999999999998 5556589


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccc-hhhhhcccc
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKV-LDTAEKAHE  397 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~-~~~~~~~h~  397 (440)
                      |+.|++||...+.....             ...++.... ...|++++.+++++ .++.+++|+...... +..+ .+|.
T Consensus       220 d~~i~~wd~~~~~~~~~-------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~  284 (466)
T COG2319         220 DGTIRLWDLSTGKLLRS-------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHS  284 (466)
T ss_pred             CCcEEEEECCCCcEEee-------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCC
Confidence            99999998774332211             112222222 22899999777754 489999999987765 4444 5788


Q ss_pred             CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ..|.++.|.|++        ..+++++.|+.+++|++....
T Consensus       285 ~~v~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~  317 (466)
T COG2319         285 SSVLSVAFSPDG--------KLLASGSSDGTVRLWDLETGK  317 (466)
T ss_pred             ccEEEEEECCCC--------CEEEEeeCCCcEEEEEcCCCc
Confidence            999999999976        677779999999999887653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.80  E-value=3.5e-17  Score=130.65  Aligned_cols=242  Identities=19%  Similarity=0.205  Sum_probs=173.4

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      -.++|+|.+|++|+..+|.+-....|.||......  .+........|...|+.+.|.|..+.                 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--~w~~~htls~Hd~~vtgvdWap~snr-----------------   69 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--LWEPAHTLSEHDKIVTGVDWAPKSNR-----------------   69 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCC--CceeceehhhhCcceeEEeecCCCCc-----------------
Confidence            45799999999999999999999999999987654  24456677788899999999987664                 


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC---ceeeeee
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG---KLLGNVD  246 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~  246 (440)
                                                                          +++|+.|..-++|....+   ++...+.
T Consensus        70 ----------------------------------------------------Ivtcs~drnayVw~~~~~~~WkptlvLl   97 (361)
T KOG1523|consen   70 ----------------------------------------------------IVTCSHDRNAYVWTQPSGGTWKPTLVLL   97 (361)
T ss_pred             ----------------------------------------------------eeEccCCCCccccccCCCCeeccceeEE
Confidence                                                                555666666777766322   3334444


Q ss_pred             CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 013578          247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW  326 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iw  326 (440)
                      .++...+++.|+|.++.||+|+....|.||-+....+.-+    ..+.-+.+.+.|++++|+|++-+|++|+.|+.+|++
T Consensus        98 RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV----sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVf  173 (361)
T KOG1523|consen   98 RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV----SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVF  173 (361)
T ss_pred             EeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh----hhhhCCccccceeeeeccCCcceecccccCcceeEE
Confidence            5677889999999999999999999999998866553221    223344578899999999999999999999999999


Q ss_pred             ecCccccccCCCC-cc--cc--ccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcCCcc-chhhhhccccCC
Q 013578          327 NINVRYHLDEDPK-TL--KV--LPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGK-VLDTAEKAHEGE  399 (440)
Q Consensus       327 d~~~~~~~~~~~~-~~--~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~-~~~~~~~~h~~~  399 (440)
                      ..--.. +.+.+. ..  ..  +...+.........+..+.|+|+|..|+- +.|+.+.+-|..... .+..+...+ -+
T Consensus       174 SayIK~-Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~-lP  251 (361)
T KOG1523|consen  174 SAYIKG-VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ-LP  251 (361)
T ss_pred             EEeeec-cccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc-CC
Confidence            753211 111110 00  00  11111222244567889999999999985 679999999887765 333433333 67


Q ss_pred             eEEEEecCC
Q 013578          400 ITCMAWAPK  408 (440)
Q Consensus       400 v~~v~~~~~  408 (440)
                      ..++.|-.+
T Consensus       252 ~ls~~~ise  260 (361)
T KOG1523|consen  252 LLSVSWISE  260 (361)
T ss_pred             ceeeEeecC
Confidence            788888766

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.79  E-value=2.2e-18  Score=150.56  Aligned_cols=244  Identities=15%  Similarity=0.244  Sum_probs=176.2

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ..+++|+||.+.|+|++|+.||+++|+|+.|+.|.+|+-.-..       .....|+..|.++.|+|-...+++++-+  
T Consensus        44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-------~LkYSH~D~IQCMsFNP~~h~LasCsLs--  114 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-------ILKYSHNDAIQCMSFNPITHQLASCSLS--  114 (1081)
T ss_pred             ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-------eeeeccCCeeeEeecCchHHHhhhcchh--
Confidence            3578999999999999999999999999999999999865432       2345688999999999976655544322  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                                                                                         . .-+|.......
T Consensus       115 -------------------------------------------------------------------d-FglWS~~qK~V  126 (1081)
T KOG1538|consen  115 -------------------------------------------------------------------D-FGLWSPEQKSV  126 (1081)
T ss_pred             -------------------------------------------------------------------h-ccccChhhhhH
Confidence                                                                               1 44565543322


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC-----CEEEE
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS-----EQIIT  316 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-----~~l~s  316 (440)
                       ...+ ....+.+++|..||++|+.|-.+|+|.+-+-....      .-.+..-.|..++|++++|+|..     ..++.
T Consensus       127 -~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  127 -SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             -Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCc------ceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence             2221 23467889999999999999999999987532221      11233445678899999999954     35777


Q ss_pred             EeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhcc
Q 013578          317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEKA  395 (440)
Q Consensus       317 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~  395 (440)
                      .....++.+|.+.....     ...+.+          ...-.|+++.++|.|+..| +++.+.+|.. .|-.+.++ ..
T Consensus       199 ~DW~qTLSFy~LsG~~I-----gk~r~L----------~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTv-g~  261 (1081)
T KOG1538|consen  199 ADWGQTLSFYQLSGKQI-----GKDRAL----------NFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTV-GE  261 (1081)
T ss_pred             EeccceeEEEEecceee-----cccccC----------CCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeec-cc
Confidence            77777888887763311     001111          1123479999999988765 5899998854 45555555 24


Q ss_pred             ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          396 HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       396 h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      .+.-|+.++..|++        ..++.|..||+|-.|++-
T Consensus       262 ~D~WIWtV~~~PNs--------Q~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  262 QDSWIWTVQAKPNS--------QYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cceeEEEEEEccCC--------ceEEEEEccCeeehhhhH
Confidence            66789999999998        899999999999988864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.79  E-value=1.7e-17  Score=136.45  Aligned_cols=145  Identities=17%  Similarity=0.275  Sum_probs=116.5

Q ss_pred             CCCCCCCCCCcccCccc-------------cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCC------CC---
Q 013578           67 SHSHGDKDQNKRHHPLD-------------VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDD------AS---  124 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~~-------------~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~------~~---  124 (440)
                      ..+++..|..+++|...             +..|..|+.+|+++.|+|+|+.||||+.+|.|.+|....      ..   
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~  107 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD  107 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence            34677777777777432             457889999999999999999999999999999998762      11   


Q ss_pred             --CcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeeccccccccee
Q 013578          125 --SKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRA  202 (440)
Q Consensus       125 --~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (440)
                        .+.+........|...+..++|+|++.                                                   
T Consensus       108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~---------------------------------------------------  136 (434)
T KOG1009|consen  108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSN---------------------------------------------------  136 (434)
T ss_pred             hCccceEEEEEecccccchhhhhccCCCc---------------------------------------------------
Confidence              223445555566777777777777654                                                   


Q ss_pred             EEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEe
Q 013578          203 ILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVY  280 (440)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  280 (440)
                                        ++++++.|..+++||+..|.....+..|...+..++|.|-++++++-+.|.+.+.+.+..
T Consensus       137 ------------------~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  137 ------------------FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             ------------------eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence                              678888889999999999999999999999999999999999999999888777777643

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=2e-17  Score=130.29  Aligned_cols=207  Identities=17%  Similarity=0.232  Sum_probs=153.3

Q ss_pred             ccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578           89 GHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM  167 (440)
Q Consensus        89 ~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~  167 (440)
                      .|..++++..|+. |-++|.++|-|-++.|||++++...  .+......|..+|..++|...+.                
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~--~vkTQLIAHDKEV~DIaf~~~s~----------------  209 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG--TVKTQLIAHDKEVYDIAFLKGSR----------------  209 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeecccc--ceeeEEEecCcceeEEEeccCcc----------------
Confidence            4678999999997 7789999999999999999986321  12334557889999999976332                


Q ss_pred             eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee-
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD-  246 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-  246 (440)
                                                                          .++++++.||.||+||++..+--..+. 
T Consensus       210 ----------------------------------------------------~~FASvgaDGSvRmFDLR~leHSTIIYE  237 (364)
T KOG0290|consen  210 ----------------------------------------------------DVFASVGADGSVRMFDLRSLEHSTIIYE  237 (364)
T ss_pred             ----------------------------------------------------ceEEEecCCCcEEEEEecccccceEEec
Confidence                                                                289999999999999999765433332 


Q ss_pred             --CCCCcccEEEecC-CCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC-CCEEEEEeCCC
Q 013578          247 --TNQLKNNMAAISP-NGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN-SEQIITASKDG  321 (440)
Q Consensus       247 --~~~~~v~~~~~s~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg  321 (440)
                        ....+...++|++ |.+++|+-.. ...|.|.|++...       ..+..+++|.+.|++++|.|. ...|+|++.|.
T Consensus       238 ~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~  310 (364)
T KOG0290|consen  238 DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDC  310 (364)
T ss_pred             CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-------cceehhhcCcccccceEecCCCCceeeecCCcc
Confidence              2234566778887 4567776544 4579999998665       478899999999999999995 45899999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC-CCCEEEEecCCEEEEE
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS-DGKILAATHGSTLQWL  381 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~i~i~  381 (440)
                      .+.+||+...-.        .....+...-. ...+|+.+.|++ .+.+++.+.++.+.+.
T Consensus       311 qaliWDl~q~~~--------~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  311 QALIWDLQQMPR--------ENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             eEEEEecccccc--------cCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence            999999985422        01111111111 345689999996 4679999988877664

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=8e-16  Score=135.30  Aligned_cols=257  Identities=14%  Similarity=0.178  Sum_probs=156.8

Q ss_pred             cCcceeEEEEccCCCEEEEee-CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578           90 HGDSVTGLCFSSDGKCLATAC-ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY  168 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s-~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~  168 (440)
                      +.+....++++||+++|+.++ .++.|.+|+++... . ..... .......+..++|+|++++++++...  ...+.+|
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~-l~~~~-~~~~~~~p~~i~~~~~g~~l~v~~~~--~~~v~v~  107 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-A-LTFAA-ESPLPGSPTHISTDHQGRFLFSASYN--ANCVSVS  107 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-c-eEEee-eecCCCCceEEEECCCCCEEEEEEcC--CCeEEEE
Confidence            345678899999999887664 57889999997321 1 11111 11233457899999999999998765  2445555


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee-----
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG-----  243 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-----  243 (440)
                      +...........                    ........+..+.++|+++.++++...++.|.+||+.+...+.     
T Consensus       108 ~~~~~g~~~~~~--------------------~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~  167 (330)
T PRK11028        108 PLDKDGIPVAPI--------------------QIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA  167 (330)
T ss_pred             EECCCCCCCCce--------------------eeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence            443110000000                    0000011233344588998677778888999999997643221     


Q ss_pred             --eeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeec---cccceEEEEEcCCCCEEEEE
Q 013578          244 --NVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKG---HKSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       244 --~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~  317 (440)
                        .... ......++|+|+|++++++.. ++.|.+|++..... .......+..+..   +......+.++|++++|+++
T Consensus       168 ~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        168 EVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             ceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence              1112 234578999999999998876 89999999974321 1111111111111   11233468999999999888


Q ss_pred             eC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcC
Q 013578          318 SK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVE  384 (440)
Q Consensus       318 ~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~  384 (440)
                      .. ++.|.+|+++......   .......    .  +  .....+.++|+|++|+++.  ++.|.+|++.
T Consensus       246 ~~~~~~I~v~~i~~~~~~~---~~~~~~~----~--~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        246 DRTASLISVFSVSEDGSVL---SFEGHQP----T--E--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             cCCCCeEEEEEEeCCCCeE---EEeEEEe----c--c--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            64 7899999996432100   0000000    0  0  1234689999999998765  7899999774

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=5.5e-17  Score=146.35  Aligned_cols=337  Identities=17%  Similarity=0.199  Sum_probs=211.1

Q ss_pred             CCCCCCCCCCCCcccCcc--------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC
Q 013578           65 PHSHSHGDKDQNKRHHPL--------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP  136 (440)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~--------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~  136 (440)
                      ....+.++.++.+..|.-        ..+.|.-|.+.|++++|++||.+|+|||..|.+.+|.+.++...      ....
T Consensus       217 ~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq------fLPR  290 (792)
T KOG1963|consen  217 ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ------FLPR  290 (792)
T ss_pred             cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc------cccc
Confidence            334456667776666632        35678889999999999999999999999999999999988743      2223


Q ss_pred             CCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578          137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA  216 (440)
Q Consensus       137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (440)
                      .+++|..+.++||+...++...|.....+...+...............    ..     +......      .....+.|
T Consensus       291 Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~----~~-----k~~~~~l------~t~~~idp  355 (792)
T KOG1963|consen  291 LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP----ST-----KTRPQSL------TTGVSIDP  355 (792)
T ss_pred             cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc----cc-----ccccccc------ceeEEEcC
Confidence            458999999999999999999886665555555443322221111100    00     0000000      01111133


Q ss_pred             CCCeEEEEeeCCceEEEEeCCCCceeeeeeC-----------CCCcccEEEecCCCCeEEEEe--------cCC--CEEE
Q 013578          217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDT-----------NQLKNNMAAISPNGRFLAAAA--------FTA--DVKV  275 (440)
Q Consensus       217 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~--------~dg--~i~i  275 (440)
                      .-+ .++-++..+.|.+||+.+.+.+..+..           +...++.++.+..|.+++++-        .||  .+++
T Consensus       356 r~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF  434 (792)
T KOG1963|consen  356 RTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF  434 (792)
T ss_pred             CCC-ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence            222 577788899999999998877666531           123456677788899998874        233  4677


Q ss_pred             EEeEecCCCceeeeee-eeeeeccccceEEEEEcC--CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCC
Q 013578          276 WEIVYSKDGLVKAVTS-VMQLKGHKSAVTWLCFAP--NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN  352 (440)
Q Consensus       276 ~d~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  352 (440)
                      |-.....    +.+.. ......|...+....+.+  .....++++.||.+++|-+..-..+........+..+.    .
T Consensus       435 W~~n~~~----kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~----s  506 (792)
T KOG1963|consen  435 WQYNPNS----KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG----S  506 (792)
T ss_pred             EEEcCCc----ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee----c
Confidence            8765443    22222 223346777666655544  23378999999999999986544332222222211111    1


Q ss_pred             CCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578          353 GATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW  432 (440)
Q Consensus       353 ~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw  432 (440)
                      -+..+++.++|+.||.+|+++.++.|.+||..+...+.........++..+.+....     .. ...+.....+.+.+|
T Consensus       507 y~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~l~~W  580 (792)
T KOG1963|consen  507 YHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQT-----QN-DGALVHATQQRLSVW  580 (792)
T ss_pred             cccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhccc-----cc-ccceeeccCceEehH
Confidence            256678899999999999999999999999998433333322233344444444321     00 123333456778888


Q ss_pred             eCCCC
Q 013578          433 LAPSL  437 (440)
Q Consensus       433 ~~~~~  437 (440)
                      ++-+.
T Consensus       581 Nll~~  585 (792)
T KOG1963|consen  581 NLLSM  585 (792)
T ss_pred             hhhhh
Confidence            87654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.78  E-value=1.7e-17  Score=130.49  Aligned_cols=224  Identities=19%  Similarity=0.211  Sum_probs=152.8

Q ss_pred             ccccc-ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeE-EecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           84 VNTLK-GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL-RINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        84 ~~~l~-~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      +..|. .|-+.|.|+.|.|++..|++-. |..|.+|+++........+. .....+....++-+|+|             
T Consensus       115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Wsp-------------  180 (370)
T KOG1007|consen  115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSP-------------  180 (370)
T ss_pred             hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCC-------------
Confidence            44455 5667999999999999998876 78899999987653211111 00111122223333333             


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                                                                           .+++. .++ ...|++++.||+++..+
T Consensus       181 -----------------------------------------------------HHdgn-qv~-tt~d~tl~~~D~RT~~~  205 (370)
T KOG1007|consen  181 -----------------------------------------------------HHDGN-QVA-TTSDSTLQFWDLRTMKK  205 (370)
T ss_pred             -----------------------------------------------------CCccc-eEE-EeCCCcEEEEEccchhh
Confidence                                                                 23444 333 34577899999998877


Q ss_pred             eeeee-CCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC-CEEEEEe
Q 013578          242 LGNVD-TNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQIITAS  318 (440)
Q Consensus       242 ~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~  318 (440)
                      ...+. .|...+..+.|+|+-+ +|++++.||.|++||.+..+       .++..+.+|..+|+++.|+|.- ++|++++
T Consensus       206 ~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~  278 (370)
T KOG1007|consen  206 NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-------FPVQELPGHSHWVWAVRFNPEHDQLILSGG  278 (370)
T ss_pred             hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-------ccccccCCCceEEEEEEecCccceEEEecC
Confidence            66664 6777899999999764 67889999999999998766       4788999999999999999954 5678999


Q ss_pred             CCCcEEEEecCccccccC-------CC----C---ccccc-cccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEE
Q 013578          319 KDGTLRVWNINVRYHLDE-------DP----K---TLKVL-PIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWL  381 (440)
Q Consensus       319 ~dg~i~iwd~~~~~~~~~-------~~----~---~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~  381 (440)
                      .|..|.+|....-..-.+       ..    .   ..+.+ ...+.....|...|++++||.-..++.++  .||.+.|=
T Consensus       279 SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs  358 (370)
T KOG1007|consen  279 SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS  358 (370)
T ss_pred             CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence            999999997654321000       00    0   00000 11122445678889999999988877663  58988875


Q ss_pred             Ec
Q 013578          382 SV  383 (440)
Q Consensus       382 d~  383 (440)
                      .+
T Consensus       359 ~V  360 (370)
T KOG1007|consen  359 SV  360 (370)
T ss_pred             cC
Confidence            44

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=3.2e-17  Score=148.39  Aligned_cols=222  Identities=15%  Similarity=0.222  Sum_probs=149.2

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCC---CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACAD---GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~d---g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      .+.+..|...+...+|||||++|+.++.+   ..|.+||+.++...   .+...   .+....++|+|||+.|+++..  
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~---~l~~~---~g~~~~~~wSPDG~~La~~~~--  267 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK---VVASF---RGHNGAPAFSPDGSRLAFASS--  267 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE---EEecC---CCccCceeECCCCCEEEEEEe--
Confidence            34567788899999999999999988754   36999999876432   12111   133456789888887665432  


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce--EEEEeCCC
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD--ISIWHGKT  238 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~vwd~~~  238 (440)
                                                                                        .++.  |++||+.+
T Consensus       268 ------------------------------------------------------------------~~g~~~Iy~~d~~~  281 (429)
T PRK01742        268 ------------------------------------------------------------------KDGVLNIYVMGANG  281 (429)
T ss_pred             ------------------------------------------------------------------cCCcEEEEEEECCC
Confidence                                                                              2232  55567765


Q ss_pred             CceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578          239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       239 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  317 (440)
                      ++. ..+..+...+....|+|||+.|+..+ .+|...||++.....       ....+ .+..  .+..|+|+|++|+..
T Consensus       282 ~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~-------~~~~l-~~~~--~~~~~SpDG~~ia~~  350 (429)
T PRK01742        282 GTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG-------GASLV-GGRG--YSAQISADGKTLVMI  350 (429)
T ss_pred             CCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC-------CeEEe-cCCC--CCccCCCCCCEEEEE
Confidence            554 44555556678899999999877665 578899999865431       11112 2333  457899999999888


Q ss_pred             eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEc--CCccchhhhhc
Q 013578          318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSV--ETGKVLDTAEK  394 (440)
Q Consensus       318 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~--~~~~~~~~~~~  394 (440)
                      +.++ +.+||+.++....        +.    . ..   ....++|+|||++|+.++ ++...+|++  .+|+....+ .
T Consensus       351 ~~~~-i~~~Dl~~g~~~~--------lt----~-~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l-~  412 (429)
T PRK01742        351 NGDN-VVKQDLTSGSTEV--------LS----S-TF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL-P  412 (429)
T ss_pred             cCCC-EEEEECCCCCeEE--------ec----C-CC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-c
Confidence            7765 5569987653210        00    0 00   123578999999988764 676666664  457777777 4


Q ss_pred             cccCCeEEEEecCC
Q 013578          395 AHEGEITCMAWAPK  408 (440)
Q Consensus       395 ~h~~~v~~v~~~~~  408 (440)
                      .|.+.+..++|+|-
T Consensus       413 ~~~g~~~~p~wsp~  426 (429)
T PRK01742        413 GSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCCCcccCCC
Confidence            78888999999985

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.77  E-value=9.3e-18  Score=134.32  Aligned_cols=246  Identities=15%  Similarity=0.178  Sum_probs=152.9

Q ss_pred             ccccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           83 DVNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ....+.||.++|+.+.|.|+. +++++||.|-+||+|++++..+  ..++.-..+|...|.++.|++++.++++++.|  
T Consensus       127 ~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD--  202 (385)
T KOG1034|consen  127 CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD--  202 (385)
T ss_pred             hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--EEEecccccccCcEEEEEEcCCCCeeeccCCc--
Confidence            356788999999999999965 7999999999999999997653  34455567788999999999998866666655  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE-EEEeeCCceEEEEeCCCCc
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI-IASCSEGTDISIWHGKTGK  240 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~  240 (440)
                       ..+.+|...........+..       ..                      +++++... +-+    ....+.+..   
T Consensus       203 -hslk~W~l~~~~f~~~lE~s-------~~----------------------~~~~~t~~pfpt----~~~~fp~fs---  245 (385)
T KOG1034|consen  203 -HSLKLWRLNVKEFKNKLELS-------IT----------------------YSPNKTTRPFPT----PKTHFPDFS---  245 (385)
T ss_pred             -ceEEEEecChhHHhhhhhhh-------cc----------------------cCCCCccCcCCc----ccccccccc---
Confidence             45555544422100000000       00                      01111000 000    001111111   


Q ss_pred             eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeE-ecCC-----CceeeeeeeeeeeccccceEE--EEEcCCCC
Q 013578          241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIV-YSKD-----GLVKAVTSVMQLKGHKSAVTW--LCFAPNSE  312 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~-----~~~~~~~~~~~~~~h~~~v~~--~~~~p~~~  312 (440)
                         +-..|...|.|+.|-  |+++++=+-++.|..|... ....     ........+..+.-....|+-  .+|.|-++
T Consensus       246 ---t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~  320 (385)
T KOG1034|consen  246 ---TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK  320 (385)
T ss_pred             ---ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH
Confidence               223456667776664  5789998999999999872 2211     000111223334434444554  45577788


Q ss_pred             EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcC
Q 013578          313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVE  384 (440)
Q Consensus       313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~  384 (440)
                      .||.|.+.|.|.+||++.....          ..+..........|...+||.||.+|+. ++|+.|.-||..
T Consensus       321 ~la~gnq~g~v~vwdL~~~ep~----------~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  321 MLALGNQSGKVYVWDLDNNEPP----------KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HHhhccCCCcEEEEECCCCCCc----------cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9999999999999999965432          1112222334456889999999997765 679999999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=1.5e-17  Score=144.55  Aligned_cols=190  Identities=19%  Similarity=0.271  Sum_probs=136.5

Q ss_pred             EEEEeeCCceEEEEeCCCC-------ceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTG-------KLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                      .|+.+++||.|++|.+..+       ++...+..|...|+++.|+| -.+.|++++.|-+|++||++..+        ..
T Consensus       642 rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~--------~~  713 (1012)
T KOG1445|consen  642 RLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK--------LY  713 (1012)
T ss_pred             HeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh--------hh
Confidence            6889999999999998754       34566778899999999999 45789999999999999998776        67


Q ss_pred             eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                      ..+.+|.+.|.+++|+|+|+.+++.+.||+|++|+-+.+...-.....      +..      ..--.+.|.-||+++++
T Consensus       714 ~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g------pvg------tRgARi~wacdgr~viv  781 (1012)
T KOG1445|consen  714 SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG------PVG------TRGARILWACDGRIVIV  781 (1012)
T ss_pred             heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC------Ccc------CcceeEEEEecCcEEEE
Confidence            789999999999999999999999999999999998865432111111      111      11236889999998876


Q ss_pred             -ecC----CEEEEEEcCCcc--chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          373 -THG----STLQWLSVETGK--VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       373 -~~~----~~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                       |.|    ..|.+||.++-.  .+....-.-.-.+.--.+.+|.       .-+++||-.|..|.+|.+--.
T Consensus       782 ~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds-------~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  782 VGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS-------NVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             ecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC-------ceEEEecCCCceEEEEEecCC
Confidence             433    578888876543  2221100000011111223332       268889999999999987543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=8.5e-18  Score=140.65  Aligned_cols=257  Identities=16%  Similarity=0.234  Sum_probs=187.0

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578           93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK  172 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~  172 (440)
                      .-..+.++.+|++|+.|+.-|.|..+|..+...      .........|.++.|..+.++++++-..    .+++|+...
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L------~~Ei~v~Etv~Dv~~LHneq~~AVAQK~----y~yvYD~~G  200 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL------HFEINVMETVRDVTFLHNEQFFAVAQKK----YVYVYDNNG  200 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeeccccee------eeeeehhhhhhhhhhhcchHHHHhhhhc----eEEEecCCC
Confidence            456789999999999999999999999988753      3333444789999999999999888654    667776554


Q ss_pred             ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcc
Q 013578          173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN  252 (440)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  252 (440)
                      ...-                         ++..+......-|.|. ..+|+++++.|.++.-|+.+|+.+..+....+.+
T Consensus       201 tElH-------------------------Clk~~~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~  254 (545)
T KOG1272|consen  201 TELH-------------------------CLKRHIRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRT  254 (545)
T ss_pred             cEEe-------------------------ehhhcCchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCcc
Confidence            3100                         0000000111111122 2278999999999999999999999999888999


Q ss_pred             cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccc
Q 013578          253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY  332 (440)
Q Consensus       253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~  332 (440)
                      ..++-+|-+..+-+|..+|+|.+|......        ++..+-.|.++|.+|++.++|++++|.+.|..++|||+++..
T Consensus       255 ~vm~qNP~NaVih~GhsnGtVSlWSP~ske--------PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSKE--------PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             chhhcCCccceEEEcCCCceEEecCCCCcc--------hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence            999999999999999999999999976554        677777899999999999999999999999999999999654


Q ss_pred             cccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEc-CCc--c-chhhhhccccCCeEEEEecCC
Q 013578          333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSV-ETG--K-VLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~-~~~--~-~~~~~~~~h~~~v~~v~~~~~  408 (440)
                      .+...    .       .    ......+++|..| +||.+.+..+.||.- ..+  . ...-+...-.+.|..+.|+|-
T Consensus       327 ql~t~----~-------t----p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~  390 (545)
T KOG1272|consen  327 QLHTY----R-------T----PHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY  390 (545)
T ss_pred             cccee----e-------c----CCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence            33210    0       0    1224457777655 567777888999953 221  1 111111122358999999997


Q ss_pred             C
Q 013578          409 T  409 (440)
Q Consensus       409 ~  409 (440)
                      .
T Consensus       391 E  391 (545)
T KOG1272|consen  391 E  391 (545)
T ss_pred             H
Confidence            5

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=6.7e-16  Score=139.45  Aligned_cols=298  Identities=13%  Similarity=0.129  Sum_probs=189.0

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY  168 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~  168 (440)
                      .|+-.++|.++||+++++|+|..||.|.+|.--..+.....+ ....=|...|.+++|+++|.+|++++..   +.+..|
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~-t~lHWH~~~V~~L~fS~~G~~LlSGG~E---~VLv~W  278 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC-TLLHWHHDEVNSLSFSSDGAYLLSGGRE---GVLVLW  278 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc-eEEEecccccceeEEecCCceEeecccc---eEEEEE
Confidence            477779999999999999999999999999754312221112 2222355799999999999999999887   567777


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN  248 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  248 (440)
                      ..+......-++.                        ......+.++||+. ..+....|+.|.+....+.+....+.+-
T Consensus       279 q~~T~~kqfLPRL------------------------gs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi  333 (792)
T KOG1963|consen  279 QLETGKKQFLPRL------------------------GSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGI  333 (792)
T ss_pred             eecCCCccccccc------------------------CCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCc
Confidence            6665432111111                        11112233478888 6666677888999987666554444321


Q ss_pred             -----------CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee------ccccceEEEEEcCCC
Q 013578          249 -----------QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK------GHKSAVTWLCFAPNS  311 (440)
Q Consensus       249 -----------~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~p~~  311 (440)
                                 .+-.+.++++|.-+.++..+..|.|.+||+-.....  ... .+....      .+.-.++.++.+-.|
T Consensus       334 ~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i--~~~-~v~~~n~~~~~~n~~v~itav~~~~~g  410 (792)
T KOG1963|consen  334 KPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI--YKL-QVCDENYSDGDVNIQVGITAVARSRFG  410 (792)
T ss_pred             cCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee--eeE-EEEeecccCCcceeEEeeeeehhhccc
Confidence                       333567889998888888889999999998655421  111 111111      233457788888889


Q ss_pred             CEEEEEe--------CCC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe-CCCCC-EEEE-ecCCEE
Q 013578          312 EQIITAS--------KDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL-SSDGK-ILAA-THGSTL  378 (440)
Q Consensus       312 ~~l~s~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~-~l~~-~~~~~i  378 (440)
                      .+++|.-        .||  .+++|-......       ...+...+..  .|...+....+ ++... ..++ +.||.+
T Consensus       411 s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k-------t~~L~T~I~~--PH~~~~vat~~~~~~rs~~~vta~~dg~~  481 (792)
T KOG1963|consen  411 SWMATLEARIDKFNFFDGEVSLKFWQYNPNSK-------TFILNTKINN--PHGNAFVATIFLNPTRSVRCVTASVDGDF  481 (792)
T ss_pred             eEEEEeeeeehhhhccCceEEEEEEEEcCCcc-------eeEEEEEEec--CCCceeEEEEEecCcccceeEEeccCCeE
Confidence            9998874        233  477887663211       1111112222  22222333333 33322 4444 569999


Q ss_pred             EEEEcCCccchhh---------hhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          379 QWLSVETGKVLDT---------AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       379 ~i~d~~~~~~~~~---------~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ++|-....+.+..         +-.-|..++++++|+.||         -+++.+.|++|.+||..+
T Consensus       482 KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG---------slla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  482 KIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG---------SLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             EEEEEecccccCcCccceEEeeeeccccCcccchhhcCCC---------cEEEEecCCEEEEecCCC
Confidence            9998844332211         112378899999999998         567778899999999987

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.75  E-value=1.4e-16  Score=127.72  Aligned_cols=283  Identities=16%  Similarity=0.175  Sum_probs=181.6

Q ss_pred             CcceeEEEEccCCCEEEEe-eCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           91 GDSVTGLCFSSDGKCLATA-CADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~-s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      -+.|..+.|..|..+++.+ ..|+.|.+|++...+-     .........++.+++|+|||+.++..+.=  ...+.+|.
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-----~ckIdeg~agls~~~WSPdgrhiL~tseF--~lriTVWS  120 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-----YCKIDEGQAGLSSISWSPDGRHILLTSEF--DLRITVWS  120 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-----EEEeccCCCcceeeeECCCcceEeeeecc--eeEEEEEE
Confidence            4778999999998877665 6788999999986542     11222334789999999999888776543  24555665


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-CCce--EEEEeCCCCceeeeee
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-EGTD--ISIWHGKTGKLLGNVD  246 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~--i~vwd~~~~~~~~~~~  246 (440)
                      ..+...                        ...-....+.....+.+||+ +.+.++ .|..  +.+..-.....++.+.
T Consensus       121 L~t~~~------------------------~~~~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~  175 (447)
T KOG4497|consen  121 LNTQKG------------------------YLLPHPKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWILLKEFK  175 (447)
T ss_pred             ecccee------------------------EEecccccCceeEEECCCCc-eeeeeecccHHHHHHHHhhHHHHHHHhcC
Confidence            544311                        11111112223445688888 444443 3321  2233233345566777


Q ss_pred             CCCCcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEE
Q 013578          247 TNQLKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLR  324 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~  324 (440)
                      ......+.+.|+|||+.|++=..  +-+|+.|.                    -.-.+..++|+|.+++|+.|+.|+.+|
T Consensus       176 ~dT~DltgieWsPdg~~laVwd~~Leykv~aYe--------------------~~lG~k~v~wsP~~qflavGsyD~~lr  235 (447)
T KOG4497|consen  176 LDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE--------------------RGLGLKFVEWSPCNQFLAVGSYDQMLR  235 (447)
T ss_pred             CCcccccCceECCCCcEEEEecchhhheeeeee--------------------eccceeEEEeccccceEEeeccchhhh
Confidence            77777889999999998876432  22222221                    124578899999999999999999998


Q ss_pred             EEecCccccccC--------------------------------CC---------------------CccccccccccCC
Q 013578          325 VWNINVRYHLDE--------------------------------DP---------------------KTLKVLPIPLLDS  351 (440)
Q Consensus       325 iwd~~~~~~~~~--------------------------------~~---------------------~~~~~~~~~~~~~  351 (440)
                      +.+--+-+...+                                .+                     ...... .+....
T Consensus       236 vlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~l-kp~tD~  314 (447)
T KOG4497|consen  236 VLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKL-KPPTDF  314 (447)
T ss_pred             hhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecc-cCCCCC
Confidence            854221110000                                00                     000000 011222


Q ss_pred             CCCeeeeeeEEeCCCCCEEEEecC---CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe
Q 013578          352 NGATLQYDRLSLSSDGKILAATHG---STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK  428 (440)
Q Consensus       352 ~~~~~~v~~~~~s~~g~~l~~~~~---~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~  428 (440)
                      ......+..++|++|..|+++-.|   +.+.+||++..+....+.  ...+|....|+|..        ..|+.+.....
T Consensus       315 pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi--Qk~piraf~WdP~~--------prL~vctg~sr  384 (447)
T KOG4497|consen  315 PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI--QKHPIRAFEWDPGR--------PRLVVCTGKSR  384 (447)
T ss_pred             CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh--hccceeEEEeCCCC--------ceEEEEcCCce
Confidence            333556778999999999999765   689999999998888876  55679999999987        56666666677


Q ss_pred             EEEEeCCC
Q 013578          429 VKLWLAPS  436 (440)
Q Consensus       429 i~vw~~~~  436 (440)
                      +++|....
T Consensus       385 LY~W~psg  392 (447)
T KOG4497|consen  385 LYFWAPSG  392 (447)
T ss_pred             EEEEcCCC
Confidence            99998764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=6.4e-17  Score=134.02  Aligned_cols=199  Identities=16%  Similarity=0.212  Sum_probs=141.7

Q ss_pred             eEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccc
Q 013578           95 TGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI  174 (440)
Q Consensus        95 ~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  174 (440)
                      .+++|+.+|..|++|+.||++|||++.....     ......|...|.++.|+||++.                      
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-----~l~e~~~~~eV~DL~FS~dgk~----------------------  200 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-----ILEEIAHHAEVKDLDFSPDGKF----------------------  200 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh-----hhhhHhhcCccccceeCCCCcE----------------------
Confidence            8899999999999999999999999876542     2344567799999999999874                      


Q ss_pred             ccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC--CCCcc
Q 013578          175 STNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT--NQLKN  252 (440)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v  252 (440)
                                                                     |++-+.| ..+||+.+++..+.....  .....
T Consensus       201 -----------------------------------------------lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~  232 (398)
T KOG0771|consen  201 -----------------------------------------------LASIGAD-SARVWSVNTGAALARKTPFSKDEMF  232 (398)
T ss_pred             -----------------------------------------------EEEecCC-ceEEEEeccCchhhhcCCcccchhh
Confidence                                                           4444555 588999998876655542  22335


Q ss_pred             cEEEecCCC-----CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          253 NMAAISPNG-----RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       253 ~~~~~s~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      ..+.|+.++     ..++....-+.|+.||+..-.....  . ...+.......|.+++.+++|++++.|+.||.|.|++
T Consensus       233 ~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~--l-~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~  309 (398)
T KOG0771|consen  233 SSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF--L-RLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYD  309 (398)
T ss_pred             hhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc--c-chhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEE
Confidence            567777776     3333334456788888754432111  0 1112222335799999999999999999999999999


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcC
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVE  384 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~  384 (440)
                      ....+.+             .+....|...|+.+.|+||.++++.- ++....+..+.
T Consensus       310 ~~~lq~~-------------~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  310 AKSLQRL-------------QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             eceeeee-------------EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            9865443             23345667789999999999998874 46666665543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=3.6e-15  Score=137.25  Aligned_cols=264  Identities=29%  Similarity=0.490  Sum_probs=191.1

Q ss_pred             CCCCCcccCcc-----ccccccccCcceeEEEEccCCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578           72 DKDQNKRHHPL-----DVNTLKGHGDSVTGLCFSSDGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA  145 (440)
Q Consensus        72 ~~~~~~~~~~~-----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~  145 (440)
                      ..++....|..     ....+.+|...|.+++|+|++.++++++. |+.+++|++....     .......|...+.+++
T Consensus       131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~  205 (466)
T COG2319         131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----PLSTLAGHTDPVSSLA  205 (466)
T ss_pred             CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----eEEeeccCCCceEEEE
Confidence            33555655543     45678899999999999999999999986 9999999998732     2334444778899999


Q ss_pred             EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578          146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC  225 (440)
Q Consensus       146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  225 (440)
                      |+|++..                                                                    .++++
T Consensus       206 ~~~~~~~--------------------------------------------------------------------~~~~~  217 (466)
T COG2319         206 FSPDGGL--------------------------------------------------------------------LIASG  217 (466)
T ss_pred             EcCCcce--------------------------------------------------------------------EEEEe
Confidence            9876541                                                                    45556


Q ss_pred             eCCceEEEEeCCCCceee-eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578          226 SEGTDISIWHGKTGKLLG-NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW  304 (440)
Q Consensus       226 ~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (440)
                      +.|+.|++||...+..+. .+..|.... ...|++++..+++++.|+.+++|++.....       ....+.+|...|.+
T Consensus       218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~v~~  289 (466)
T COG2319         218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-------LLRTLSGHSSSVLS  289 (466)
T ss_pred             cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-------EEEEEecCCccEEE
Confidence            788889999988777777 577776664 448999999999999999999999976552       12223678899999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEE
Q 013578          305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLS  382 (440)
Q Consensus       305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d  382 (440)
                      +.|+|++..+++++.|+.+++||+.+........            ...+...+..+.+.+++..++.+  .++.+.+|+
T Consensus       290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  357 (466)
T COG2319         290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD  357 (466)
T ss_pred             EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence            9999988888889999899999887654322111            11223357778884343455544  478899999


Q ss_pred             cCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       383 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ..........  .....+..+.+.+ ..       .....+..++.+.+|+.....
T Consensus       358 ~~~~~~~~~~--~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~  403 (466)
T COG2319         358 LRTGKPLKTL--EGHSNVLSVSFSP-DG-------RVVSSGSTDGTVRLWDLSTGS  403 (466)
T ss_pred             cCCCceeEEe--cCCceEEEEEECC-CC-------CEEEEecCCCceEEEecccCe
Confidence            9888722222  1222288888887 41       233348899999999998754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=8.3e-17  Score=129.65  Aligned_cols=149  Identities=19%  Similarity=0.306  Sum_probs=121.4

Q ss_pred             CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC--CCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578          262 RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP--NSEQIITASKDGTLRVWNINVRYHLDEDPK  339 (440)
Q Consensus       262 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  339 (440)
                      ..+|++..+|.|++||..+++        .+..++++...++.+.|..  ....+.+|+.||+|++||++........  
T Consensus        41 ~~vav~lSngsv~lyd~~tg~--------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~--  110 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ--------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI--  110 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh--------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe--
Confidence            568889999999999998766        7888999999999999977  3567899999999999999976543211  


Q ss_pred             ccccccccccCCCCC-eeeeeeEEeCCCCCEEEEec-----CCEEEEEEcCCccc-hhhhhccccCCeEEEEecCCCCCC
Q 013578          340 TLKVLPIPLLDSNGA-TLQYDRLSLSSDGKILAATH-----GSTLQWLSVETGKV-LDTAEKAHEGEITCMAWAPKTIPM  412 (440)
Q Consensus       340 ~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~-----~~~i~i~d~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~  412 (440)
                                ....+ ..+..+++....++++++|.     +-.|.+||++..+. +..+...|.+.|+++.|+|..+  
T Consensus       111 ----------~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p--  178 (376)
T KOG1188|consen  111 ----------SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP--  178 (376)
T ss_pred             ----------eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC--
Confidence                      11111 23466777777888998874     56899999998877 7888789999999999999875  


Q ss_pred             CCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          413 GNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       413 ~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                           ++|+|||.||.|.|||+...
T Consensus       179 -----nlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  179 -----NLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             -----CeEEeecccceEEeeecCCC
Confidence                 89999999999999999754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=7e-16  Score=139.75  Aligned_cols=216  Identities=16%  Similarity=0.193  Sum_probs=144.2

Q ss_pred             CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCcee
Q 013578          112 DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIK  191 (440)
Q Consensus       112 dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (440)
                      +..|.+||.+....      .....+...+.+.+|+|||+.++.++.+                                
T Consensus       183 ~~~i~i~d~dg~~~------~~lt~~~~~v~~p~wSPDG~~la~~s~~--------------------------------  224 (429)
T PRK01742        183 PYEVRVADYDGFNQ------FIVNRSSQPLMSPAWSPDGSKLAYVSFE--------------------------------  224 (429)
T ss_pred             eEEEEEECCCCCCc------eEeccCCCccccceEcCCCCEEEEEEec--------------------------------
Confidence            46899999875432      2223455678899999999877655422                                


Q ss_pred             ecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cC
Q 013578          192 WEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FT  270 (440)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d  270 (440)
                                                        ..+..|++||+.+++.... .........++|+|||+.|+.+. .+
T Consensus       225 ----------------------------------~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~  269 (429)
T PRK01742        225 ----------------------------------NKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKD  269 (429)
T ss_pred             ----------------------------------CCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecC
Confidence                                              1234588999987754222 11222345689999999888765 68


Q ss_pred             CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCcccccccccc
Q 013578          271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLL  349 (440)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  349 (440)
                      |.+.||.++....       ....+..+...+....|+|||+.|+..+ .++...||+++....      ....+     
T Consensus       270 g~~~Iy~~d~~~~-------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~------~~~~l-----  331 (429)
T PRK01742        270 GVLNIYVMGANGG-------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG------GASLV-----  331 (429)
T ss_pred             CcEEEEEEECCCC-------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC------CeEEe-----
Confidence            8877776543221       2334555667788999999999877555 678889998763211      00100     


Q ss_pred             CCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeE
Q 013578          350 DSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKV  429 (440)
Q Consensus       350 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i  429 (440)
                      ...+     ...+|+|||++|+......+.+||+.+++..... ..+  ....+.|+|++        ++|+.++.++.+
T Consensus       332 ~~~~-----~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt-~~~--~~~~~~~sPdG--------~~i~~~s~~g~~  395 (429)
T PRK01742        332 GGRG-----YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLS-STF--LDESPSISPNG--------IMIIYSSTQGLG  395 (429)
T ss_pred             cCCC-----CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEec-CCC--CCCCceECCCC--------CEEEEEEcCCCc
Confidence            1111     2478999999998876566777999988754322 122  24568899998        899999999988


Q ss_pred             EEEeC
Q 013578          430 KLWLA  434 (440)
Q Consensus       430 ~vw~~  434 (440)
                      .+|.+
T Consensus       396 ~~l~~  400 (429)
T PRK01742        396 KVLQL  400 (429)
T ss_pred             eEEEE
Confidence            88875

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=9.3e-17  Score=123.35  Aligned_cols=175  Identities=17%  Similarity=0.280  Sum_probs=129.6

Q ss_pred             ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce--eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578          252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV--KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                      |..-+++|.+++|++|..+|.|-++.+.....+..  .....+...++|.++|..++|+  ..+|++|+ ||.|+-|..+
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence            45568999999999999999999999865433222  1223455668999999999997  44666665 5999999877


Q ss_pred             ccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-CCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578          330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-GKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                      ........ +.......|..........|+++...|. +.++.+|.|+.++-||+++|+....+ ++|++-|.++.--..
T Consensus        90 E~~es~~~-K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   90 EEEESLAT-KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNA  167 (325)
T ss_pred             hhhhhccc-hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE-cCCcceeeeeeeccc
Confidence            54331111 1111122233333334456889999976 45666788999999999999999998 699999999988444


Q ss_pred             CCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          409 TIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       409 ~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      .        ..+++|++||++||||..++++
T Consensus       168 ~--------~qilsG~EDGtvRvWd~kt~k~  190 (325)
T KOG0649|consen  168 N--------GQILSGAEDGTVRVWDTKTQKH  190 (325)
T ss_pred             C--------cceeecCCCccEEEEeccccce
Confidence            3        5899999999999999999876

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=4.4e-14  Score=113.15  Aligned_cols=245  Identities=18%  Similarity=0.213  Sum_probs=150.7

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccc
Q 013578           94 VTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKA  173 (440)
Q Consensus        94 V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  173 (440)
                      ...++|+.|...++.|..+| .|||+++.-...     .......+.+.-+...-..++++.++....            
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~-----~~r~~~~~G~~~veMLfR~N~laLVGGg~~------------   69 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES-----ASRQFIDGGFKIVEMLFRSNYLALVGGGSR------------   69 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhh-----hhhccccCchhhhhHhhhhceEEEecCCCC------------
Confidence            34499999999999988877 899998753221     111111122333333345566666653321            


Q ss_pred             cccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC-CCceeeeeeCCCCcc
Q 013578          174 ISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK-TGKLLGNVDTNQLKN  252 (440)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~v  252 (440)
                              ....+...+.|+..+........-......+...++   .++..- .+.|+||... +.+.++.+.....+-
T Consensus        70 --------pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPk  137 (346)
T KOG2111|consen   70 --------PKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK  137 (346)
T ss_pred             --------CCCCCceEEEEecccCcEEEEEEeccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCC
Confidence                    111223334444322222222222222222222222   455544 4459999987 445666654432222


Q ss_pred             cEEEecC--CCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc-EEEEec
Q 013578          253 NMAAISP--NGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT-LRVWNI  328 (440)
Q Consensus       253 ~~~~~s~--~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~-i~iwd~  328 (440)
                      --++..|  +..+||.-+ .-|+|+|-|+.....+      ....+.+|.+.|.|++.+-+|..+||+|..|+ |||||.
T Consensus       138 GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt  211 (346)
T KOG2111|consen  138 GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT  211 (346)
T ss_pred             ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc
Confidence            2233333  444555433 4699999999765521      24567889999999999999999999999997 899999


Q ss_pred             CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecC-CEEEEEEcCCc
Q 013578          329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG-STLQWLSVETG  386 (440)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~i~i~d~~~~  386 (440)
                      .++..+.+..            .......|.+++|||+..+||+++| |+++||.++..
T Consensus       212 ~~g~~l~E~R------------RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  212 EDGTLLQELR------------RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CCCcEeeeee------------cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            9887765422            2233456899999999999999885 89999987653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.1e-16  Score=137.20  Aligned_cols=233  Identities=15%  Similarity=0.175  Sum_probs=158.4

Q ss_pred             CCCCCCCCCCcccCcc------------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCC-----Cccee
Q 013578           67 SHSHGDKDQNKRHHPL------------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDAS-----SKSFK  129 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~------------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~-----~~~~~  129 (440)
                      ...+++.++..+.|.+            ++.+|.+|.++|.|+++.+++..+++|+.||+|+.|++....     .....
T Consensus       308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v  387 (577)
T KOG0642|consen  308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV  387 (577)
T ss_pred             eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcch
Confidence            3455566666665554            578999999999999999999999999999999999876221     11223


Q ss_pred             eEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccc-cccccccCCCCCCceeecccccccceeEEEeec
Q 013578          130 FLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS-TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFG  208 (440)
Q Consensus       130 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (440)
                      ......+|...|..+++++....|+.++.|   ..++.|....... ..........+.   ..+....           
T Consensus       388 l~~~l~Ghtdavw~l~~s~~~~~Llscs~D---gTvr~w~~~~~~~~~f~~~~e~g~Pl---svd~~ss-----------  450 (577)
T KOG0642|consen  388 LSGTLLGHTDAVWLLALSSTKDRLLSCSSD---GTVRLWEPTEESPCTFGEPKEHGYPL---SVDRTSS-----------  450 (577)
T ss_pred             hccceeccccceeeeeecccccceeeecCC---ceEEeeccCCcCccccCCccccCCcc---eEeeccc-----------
Confidence            445677899999999999999999999988   4566665544322 011111111100   0000000           


Q ss_pred             ccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-------CCcccEEEecCCCCeEEEEecCCCEEEEEeEec
Q 013578          209 ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-------QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS  281 (440)
Q Consensus       209 ~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  281 (440)
                              .-. +.++...-+.--++++.....+..+...       ...+..+.++|.+.+.+++..|+.|+++|...+
T Consensus       451 --------~~a-~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~  521 (577)
T KOG0642|consen  451 --------RPA-HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG  521 (577)
T ss_pred             --------hhH-hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence                    000 1122112222223333333333333211       234667889999999999999999999999877


Q ss_pred             CCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCcccc
Q 013578          282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH  333 (440)
Q Consensus       282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~  333 (440)
                      .        .++....|...++++++.|+|.+|++++.|+.+++|.+....+
T Consensus       522 ~--------~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  522 K--------ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             c--------cchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence            6        7888889999999999999999999999999999999875544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.72  E-value=3.5e-15  Score=127.49  Aligned_cols=201  Identities=14%  Similarity=0.184  Sum_probs=140.0

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeee----CCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCce---------
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVD----TNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLV---------  286 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~---------  286 (440)
                      -++.|-.-|.|.+.|....+..+.+.    .....++|+.|-|. ...++++-.+|.+++||....-....         
T Consensus       187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~  266 (636)
T KOG2394|consen  187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG  266 (636)
T ss_pred             ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence            45556666778888876533222221    23467999999884 45666777899999998632110000         


Q ss_pred             -----------eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCe
Q 013578          287 -----------KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT  355 (440)
Q Consensus       287 -----------~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (440)
                                 ....++..+.--.+.|..++|+|||++||+.++||.+||+|..+...+....              .--
T Consensus       267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--------------SYF  332 (636)
T KOG2394|consen  267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--------------SYF  332 (636)
T ss_pred             CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--------------hhc
Confidence                       0001233333345689999999999999999999999999998765432110              111


Q ss_pred             eeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCC---------C-------------
Q 013578          356 LQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP---------M-------------  412 (440)
Q Consensus       356 ~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~---------~-------------  412 (440)
                      ....|++|||||+|+++|. |..|.||.+...+.+..- .+|..-|..|+|.|--..         +             
T Consensus       333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG-qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~  411 (636)
T KOG2394|consen  333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG-QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEI  411 (636)
T ss_pred             cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec-cccccceeeEeecccccccccccccccccccccchhccccc
Confidence            2367999999999999976 899999999999999988 599999999999941100         0             


Q ss_pred             -------CCC-----------cceEEEEeeCCCeEEEEeCCC
Q 013578          413 -------GNQ-----------QVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       413 -------~~~-----------~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                             .++           -...+.+.|.|-.+.+||+..
T Consensus       412 r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte  453 (636)
T KOG2394|consen  412 RANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE  453 (636)
T ss_pred             ccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence                   001           124688999999999999964

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.72  E-value=1.3e-16  Score=136.04  Aligned_cols=184  Identities=20%  Similarity=0.188  Sum_probs=139.3

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      -+...+|.++|.|-.|+|||.-|+|++.||.|++|.-...-      .........+|.|++|.|+...++.+..     
T Consensus        97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML------RStl~Q~~~~v~c~~W~p~S~~vl~c~g-----  165 (737)
T KOG1524|consen   97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML------RSTVVQNEESIRCARWAPNSNSIVFCQG-----  165 (737)
T ss_pred             hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH------HHHHhhcCceeEEEEECCCCCceEEecC-----
Confidence            45678999999999999999999999999999999865432      1223344578999999998775544432     


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                                                                                       +.+.+=.+.....+.
T Consensus       166 -----------------------------------------------------------------~h~~IKpL~~n~k~i  180 (737)
T KOG1524|consen  166 -----------------------------------------------------------------GHISIKPLAANSKII  180 (737)
T ss_pred             -----------------------------------------------------------------CeEEEeeccccccee
Confidence                                                                             224444444445556


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL  323 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i  323 (440)
                      ..+.|.+-|.++.|++..+.+++|++|-+.++||-...         .+..-..|.-+|++++|.|+ +.++.++.+ +.
T Consensus       181 ~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~---------~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~  249 (737)
T KOG1524|consen  181 RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA---------NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TA  249 (737)
T ss_pred             EEeccCcEEEEeecCccccceeecCCceeEEeecccCc---------ccccCChhccceeeeeeccc-cceeeeeee-ee
Confidence            67889999999999999999999999999999995322         56677789999999999999 666777653 55


Q ss_pred             EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEE
Q 013578          324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQ  379 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~  379 (440)
                      |+=..+                         ...|..++||+||..+++|. .|.+.
T Consensus       250 R~~~p~-------------------------~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  250 RFSSPR-------------------------VGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             eecCCC-------------------------ccceEEEEEcCCCceeeccccCceEE
Confidence            532222                         23477899999999999875 45443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=6.4e-15  Score=133.11  Aligned_cols=225  Identities=14%  Similarity=0.193  Sum_probs=143.4

Q ss_pred             cccccCcceeEEEEccCCCEEEEeeC---CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           86 TLKGHGDSVTGLCFSSDGKCLATACA---DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        86 ~l~~H~~~V~~l~~s~dg~~l~t~s~---dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      .+..+...+.+.+|||||+.|+..+.   +..|.+|++.+++..   .+   ....+.+..++|+|||+.|+.....   
T Consensus       193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---~l---~~~~~~~~~~~~SPDG~~La~~~~~---  263 (429)
T PRK03629        193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QV---ASFPRHNGAPAFSPDGSKLAFALSK---  263 (429)
T ss_pred             EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---Ec---cCCCCCcCCeEECCCCCEEEEEEcC---
Confidence            34455668899999999999987642   456889998765422   11   1122345568899988876644211   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                                                                                     ..+..|++||+.+++..
T Consensus       264 ---------------------------------------------------------------~g~~~I~~~d~~tg~~~  280 (429)
T PRK03629        264 ---------------------------------------------------------------TGSLNLYVMDLASGQIR  280 (429)
T ss_pred             ---------------------------------------------------------------CCCcEEEEEECCCCCEE
Confidence                                                                           11124888998877654


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecC-CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC-
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFT-ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD-  320 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-  320 (440)
                      .. ..+...+....|+|||+.|+..+.+ +...||.++....       ....+..+........|+|||++|+..+.+ 
T Consensus       281 ~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-------~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~  352 (429)
T PRK03629        281 QV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-------APQRITWEGSQNQDADVSSDGKFMVMVSSNG  352 (429)
T ss_pred             Ec-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-------CeEEeecCCCCccCEEECCCCCEEEEEEccC
Confidence            43 3334456789999999988877654 5566665543221       122222233445678999999998876543 


Q ss_pred             --CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC---EEEEEEcCCccchhhhhc
Q 013578          321 --GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS---TLQWLSVETGKVLDTAEK  394 (440)
Q Consensus       321 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~---~i~i~d~~~~~~~~~~~~  394 (440)
                        ..|.+||+.++...        .+.    . ..   ......|+|||++|+.+. ++   .++++++ +|+....+ .
T Consensus       353 g~~~I~~~dl~~g~~~--------~Lt----~-~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l-~  414 (429)
T PRK03629        353 GQQHIAKQDLATGGVQ--------VLT----D-TF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARL-P  414 (429)
T ss_pred             CCceEEEEECCCCCeE--------EeC----C-CC---CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEEC-c
Confidence              35888898765321        111    0 00   123578999999888754 32   4677777 45555556 4


Q ss_pred             cccCCeEEEEecCC
Q 013578          395 AHEGEITCMAWAPK  408 (440)
Q Consensus       395 ~h~~~v~~v~~~~~  408 (440)
                      +|.+.+...+|+|-
T Consensus       415 ~~~~~~~~p~Wsp~  428 (429)
T PRK03629        415 ATDGQVKFPAWSPY  428 (429)
T ss_pred             cCCCCcCCcccCCC
Confidence            68888999999983

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.69  E-value=2.9e-15  Score=121.04  Aligned_cols=298  Identities=14%  Similarity=0.204  Sum_probs=172.3

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC------------CCCCceEEEccCCC--eEEEE
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP------------GGPPTAVAFADNAT--SIVVA  156 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~------------~~~v~~v~~~~~~~--~l~~~  156 (440)
                      .+-|.++.|..+|.+||||..+|.|.++.-.............+..|            ...|..+.|.+++.  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            46789999999999999999999999997654432222222222222            24567777777654  33344


Q ss_pred             eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578          157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG  236 (440)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~  236 (440)
                      +.+   ..+.+|..........+.        ...+.....                 ....-...+.+..+-.+-    
T Consensus       105 tNd---ktiKlWKi~er~~k~~~~--------~~~~~~~~~-----------------~~~~lr~p~~~~~~~~ve----  152 (433)
T KOG1354|consen  105 TND---KTIKLWKIRERGSKKEGY--------NLPEEGPPG-----------------TITSLRLPVEGRHDLEVE----  152 (433)
T ss_pred             cCC---cceeeeeeeccccccccc--------cccccCCCC-----------------ccceeeceeeccccceee----
Confidence            333   334444332221111000        000000000                 000000111111111000    


Q ss_pred             CCCceeeee-eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc-----ccceEEEEEcCC
Q 013578          237 KTGKLLGNV-DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH-----KSAVTWLCFAPN  310 (440)
Q Consensus       237 ~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~p~  310 (440)
                        ..+.+.+ ..|...+.++.++.|+..++++. |-.|.+|++.....    .+ .+..++.+     ..-|++..|+|.
T Consensus       153 --a~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~----sF-nIVDIKP~nmEeLteVITsaEFhp~  224 (433)
T KOG1354|consen  153 --ASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ----SF-NIVDIKPANMEELTEVITSAEFHPH  224 (433)
T ss_pred             --eeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCC----ce-eEEEccccCHHHHHHHHhhhccCHh
Confidence              0111222 35677789999999999998874 78899999865431    11 12233333     346899999994


Q ss_pred             -CCEEEEEeCCCcEEEEecCccccccCCCCcccccccc--ccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcC-Cc
Q 013578          311 -SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIP--LLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVE-TG  386 (440)
Q Consensus       311 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~-~~  386 (440)
                       ...|+-.+..|+|++-|++................-+  ......-...|..+.|+++|+|+++-+--+|.+||+. ..
T Consensus       225 ~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~  304 (433)
T KOG1354|consen  225 HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA  304 (433)
T ss_pred             HccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC
Confidence             4567777788999999999554332211111111000  0111122345788999999999999999999999993 34


Q ss_pred             cchhhhhcccc------------CCe---EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          387 KVLDTAEKAHE------------GEI---TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       387 ~~~~~~~~~h~------------~~v---~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +++..+ ..|.            +.|   ..++|+.++        .+++||+....++++++..+
T Consensus       305 ~pv~t~-~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~--------~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  305 KPVETY-PVHEYLRSKLCSLYENDAIFDKFECSWSGND--------SYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CcceEE-eehHhHHHHHHHHhhccchhheeEEEEcCCc--------ceEecccccceEEEecCCCC
Confidence            444433 2332            233   357898887        89999999999999997665

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=3.6e-14  Score=115.61  Aligned_cols=309  Identities=15%  Similarity=0.206  Sum_probs=179.9

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCe-EEEEeecCCcceEEeec
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATS-IVVATHNLSGCSLYMYG  169 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~~~~~~~~~~~~  169 (440)
                      .-.+..++|++.-..+|++..|-+||+|+-.....     .......+..|++++|-|.+.. |++++..    .|.+|.
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-----t~Lks~sQrnvtclawRPlsaselavgCr~----gIciW~  168 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-----TKLKSVSQRNVTCLAWRPLSASELAVGCRA----GICIWS  168 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC-----ceecchhhcceeEEEeccCCcceeeeeecc----eeEEEE
Confidence            45688899998767788999999999999776322     2233345578999999997654 4555443    455555


Q ss_pred             cccccccccccc-cCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-CCceEEEEeCCCCceeeeeeC
Q 013578          170 EEKAISTNEGKQ-QSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-EGTDISIWHGKTGKLLGNVDT  247 (440)
Q Consensus       170 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~  247 (440)
                      ............ ......   ..-...+|        .....+.+.+||. .+++++ .|..|.+||..++..+.....
T Consensus       169 ~s~tln~~r~~~~~s~~~~---qvl~~pgh--------~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~  236 (445)
T KOG2139|consen  169 DSRTLNANRNIRMMSTHHL---QVLQDPGH--------NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPK  236 (445)
T ss_pred             cCcccccccccccccccch---hheeCCCC--------ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccccc
Confidence            544322211100 000000   00000111        1122233467777 566655 567899999999987766655


Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      ..+.++-+.|||||.+|++++-|+..++|......       ... ......+.|..-.|+|+|++|+-.+. |.-++|.
T Consensus       237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w-------t~e-rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lys  307 (445)
T KOG2139|consen  237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW-------TKE-RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYS  307 (445)
T ss_pred             CCCceeeEEEcCCCCEEEEecccceeeeehhcccc-------eec-ceeccCCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence            56678899999999999999999999999653222       111 12223458999999999997654432 3445555


Q ss_pred             cCccccccCC--CCcccc----ccccccCC----CCCeeeeeeEEeCCCCCEEEEecC---------CEEEEEEcCCccc
Q 013578          328 INVRYHLDED--PKTLKV----LPIPLLDS----NGATLQYDRLSLSSDGKILAATHG---------STLQWLSVETGKV  388 (440)
Q Consensus       328 ~~~~~~~~~~--~~~~~~----~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~---------~~i~i~d~~~~~~  388 (440)
                      +.........  +...+.    ..++....    ..-..+..+++|.|.|.+||+...         ..|.+||....-.
T Consensus       308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~  387 (445)
T KOG2139|consen  308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP  387 (445)
T ss_pred             EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence            4422111110  011000    01111111    111345678999999999998542         3456676654433


Q ss_pred             hhhhhcc--ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          389 LDTAEKA--HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       389 ~~~~~~~--h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      +.-..-+  .......+.|+|-.     .++.+|..+=+.|.+.-|.+
T Consensus       388 vels~cg~i~ge~P~~IsF~pl~-----n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  388 VELSYCGMIGGEYPAYISFGPLK-----NEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             eEEEecccccCCCCceEEeeecc-----cCCcEEEEEeccCceEeeee
Confidence            2211000  11225566777654     34467777777888877765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.68  E-value=3.7e-15  Score=120.45  Aligned_cols=337  Identities=17%  Similarity=0.194  Sum_probs=197.6

Q ss_pred             CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578           80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN  159 (440)
Q Consensus        80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~  159 (440)
                      .+..++.++||.+.|+....-|...-+++.+.|.++|||--.+. ...++.+.  .....+++++.+.++...|+++-.+
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds-~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~n   89 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDS-GQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDN   89 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccc-cccCchhh--hhCCCCceEeeeeccceEEEEEEec
Confidence            34467889999999999999998888999999999999964332 22222222  2233778999999999999988877


Q ss_pred             CCcceEEeeccccccccccccc------cCCCCCCceeecccccccceeEEEeeccccc------ccCCCCCe----EEE
Q 013578          160 LSGCSLYMYGEEKAISTNEGKQ------QSKLPGPEIKWEHHKVHDKRAILTLFGASAT------YGTADGST----IIA  223 (440)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~----~l~  223 (440)
                      +......+...-+.........      ...+......|-....+++............      ...+....    +.+
T Consensus        90 gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~f  169 (404)
T KOG1409|consen   90 GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAF  169 (404)
T ss_pred             ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEE
Confidence            6555544433322211100000      0001111112222222222222221110000      00000000    223


Q ss_pred             EeeCCceEEEEeC--CCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578          224 SCSEGTDISIWHG--KTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA  301 (440)
Q Consensus       224 s~~~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~  301 (440)
                      .|...|.|....+  ..-..+.++.+|...+.+++|.+....|++|..|..+.+||+...+       .....+.+|...
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-------g~~~el~gh~~k  242 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-------GTAYELQGHNDK  242 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-------ceeeeeccchhh
Confidence            3333444444332  3345677888999999999999999999999999999999996554       246678899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcc-------cc-------------ccccccCCCCCeeeeeeE
Q 013578          302 VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTL-------KV-------------LPIPLLDSNGATLQYDRL  361 (440)
Q Consensus       302 v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~-------------~~~~~~~~~~~~~~v~~~  361 (440)
                      |..+...+--+.+++++.||.|.+|+++........-...       +.             +.+..+....-...+...
T Consensus       243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~  322 (404)
T KOG1409|consen  243 VQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGK  322 (404)
T ss_pred             hhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcc
Confidence            9999988888899999999999999998543321100000       00             000000000000111111


Q ss_pred             EeCCCCCEEEEecCCEEEEEEcCCc-------cchhhhhcccc--CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578          362 SLSSDGKILAATHGSTLQWLSVETG-------KVLDTAEKAHE--GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW  432 (440)
Q Consensus       362 ~~s~~g~~l~~~~~~~i~i~d~~~~-------~~~~~~~~~h~--~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw  432 (440)
                      +-+....+...|.+-.+++.|.--.       ..+..   .|+  ..|+.+.+..+-        .+|+|+|.|..|+||
T Consensus       323 c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~---phei~tgItamhlqetl--------glLvTsG~~Rvi~iw  391 (404)
T KOG1409|consen  323 CSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAI---PHEIKTGITAMHLQETL--------GLLVTSGTDRVIKIW  391 (404)
T ss_pred             cccCccccccccceeEEEEecccchhhhcCCCCcccc---ccccccceeEEEhhhhc--------cceeecCCceEEEEE
Confidence            1122222333444555666553211       12332   243  369999998886        799999999999999


Q ss_pred             eCCCC
Q 013578          433 LAPSL  437 (440)
Q Consensus       433 ~~~~~  437 (440)
                      |+++.
T Consensus       392 d~~~v  396 (404)
T KOG1409|consen  392 DVRSV  396 (404)
T ss_pred             echhh
Confidence            99763

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.67  E-value=3.4e-15  Score=130.97  Aligned_cols=233  Identities=19%  Similarity=0.293  Sum_probs=171.3

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578           93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK  172 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~  172 (440)
                      .|..++|-|||..|+.+..| .+-+||.+.+.     .+....+|...|.+++|+.||+                     
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~-----llqtLKgHKDtVycVAys~dGk---------------------   66 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGT-----LLQPLKGHKDTVYCVAYAKDGK---------------------   66 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcc-----cccccccccceEEEEEEccCCc---------------------
Confidence            89999999999988887655 68999999876     4567778999999999988876                     


Q ss_pred             ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcc
Q 013578          173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN  252 (440)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  252 (440)
                                                                      .+++|+.|..|.+|+.+-...+ . ..|...|
T Consensus        67 ------------------------------------------------rFASG~aDK~VI~W~~klEG~L-k-YSH~D~I   96 (1081)
T KOG1538|consen   67 ------------------------------------------------RFASGSADKSVIIWTSKLEGIL-K-YSHNDAI   96 (1081)
T ss_pred             ------------------------------------------------eeccCCCceeEEEeccccccee-e-eccCCee
Confidence                                                            6788888999999986532222 2 2578899


Q ss_pred             cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccc
Q 013578          253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY  332 (440)
Q Consensus       253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~  332 (440)
                      .|+.|+|-...|++++-+ ..-+|......         +...+ ....|.+.+|..||.+|+.|-.||+|.+-+-....
T Consensus        97 QCMsFNP~~h~LasCsLs-dFglWS~~qK~---------V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe  165 (1081)
T KOG1538|consen   97 QCMSFNPITHQLASCSLS-DFGLWSPEQKS---------VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE  165 (1081)
T ss_pred             eEeecCchHHHhhhcchh-hccccChhhhh---------HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCc
Confidence            999999999999998754 45677753221         21111 34568899999999999999999999987543211


Q ss_pred             cccCCCCccccccccccCCCCCeeeeeeEEeCCCC-----CEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578          333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-----KILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~  406 (440)
                                  ...+....+...+|.+++|+|..     ..+++.+ +.++.+|.+. |+.+..- +.-.-...|+.+.
T Consensus       166 ------------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~-r~L~FdP~CisYf  231 (1081)
T KOG1538|consen  166 ------------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKD-RALNFDPCCISYF  231 (1081)
T ss_pred             ------------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccc-ccCCCCchhheec
Confidence                        11233345667789999999973     3666665 6777777664 4443321 1223346789999


Q ss_pred             CCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          407 PKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ++|        .+++.||.|+.+++|.-+
T Consensus       232 ~NG--------Ey~LiGGsdk~L~~fTR~  252 (1081)
T KOG1538|consen  232 TNG--------EYILLGGSDKQLSLFTRD  252 (1081)
T ss_pred             cCC--------cEEEEccCCCceEEEeec
Confidence            998        899999999999998654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.1e-14  Score=129.33  Aligned_cols=226  Identities=16%  Similarity=0.244  Sum_probs=141.6

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCC---CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACAD---GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~d---g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      .+.+..|...+.+.+|+|||+.|+..+.+   ..|.+|++.++...   .+   ....+...+.+|+|+|+.++..... 
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---~l---~~~~g~~~~~~~SpDG~~l~~~~s~-  268 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---LV---ASFRGINGAPSFSPDGRRLALTLSR-  268 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---Ee---ccCCCCccCceECCCCCEEEEEEeC-
Confidence            34566677889999999999999988743   46999999766432   11   1222345577888888766543211 


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK  240 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  240 (440)
                                                                                       ..+..|++||+.+++
T Consensus       269 -----------------------------------------------------------------~g~~~Iy~~d~~~g~  283 (433)
T PRK04922        269 -----------------------------------------------------------------DGNPEIYVMDLGSRQ  283 (433)
T ss_pred             -----------------------------------------------------------------CCCceEEEEECCCCC
Confidence                                                                             112358889988776


Q ss_pred             eeeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578          241 LLGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      .. .+..+.......+|+|||+.|+..+. +|...+|.+.... +      ....+..+.......+|+|+|++|+..+.
T Consensus       284 ~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g------~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        284 LT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-G------SAERLTFQGNYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             eE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-C------CeEEeecCCCCccCEEECCCCCEEEEEEC
Confidence            53 34444444567899999998887764 5554555443221 1      11112222234457899999999887654


Q ss_pred             CC---cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec----CCEEEEEEcCCccchhhh
Q 013578          320 DG---TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH----GSTLQWLSVETGKVLDTA  392 (440)
Q Consensus       320 dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~i~i~d~~~~~~~~~~  392 (440)
                      ++   .|.+||+.++...        .+    .. ..   ......|+|||++++...    .+.|++++... .....+
T Consensus       356 ~~~~~~I~v~d~~~g~~~--------~L----t~-~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l  418 (433)
T PRK04922        356 SGGQYRIAVMDLSTGSVR--------TL----TP-GS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRL  418 (433)
T ss_pred             CCCceeEEEEECCCCCeE--------EC----CC-CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEc
Confidence            43   5899998765321        11    00 00   123478999999877643    24688888854 444444


Q ss_pred             hccccCCeEEEEecC
Q 013578          393 EKAHEGEITCMAWAP  407 (440)
Q Consensus       393 ~~~h~~~v~~v~~~~  407 (440)
                       ..+.+.+...+|+|
T Consensus       419 -~~~~g~~~~p~wsp  432 (433)
T PRK04922        419 -VSADGEVREPAWSP  432 (433)
T ss_pred             -ccCCCCCCCCccCC
Confidence             24567788888887

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.66  E-value=1.3e-14  Score=116.22  Aligned_cols=193  Identities=13%  Similarity=0.145  Sum_probs=147.1

Q ss_pred             EEEEeeCCceEEEEeCCCC---ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578          221 IIASCSEGTDISIWHGKTG---KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                      .++.+.....|.||.....   +..+++..|...++++.|+|..+.|++++.|..-++|....+     ..+.+...+..
T Consensus        24 ~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~-----~~WkptlvLlR   98 (361)
T KOG1523|consen   24 QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG-----GTWKPTLVLLR   98 (361)
T ss_pred             eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC-----CeeccceeEEE
Confidence            4555566666778776543   467888999999999999999999999999999999997533     23445556667


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC
Q 013578          298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS  376 (440)
Q Consensus       298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~  376 (440)
                      +....+++.|+|.++.||+|+.-..|.||-++....-.          ...+........|.+++|+|++-+|++|+ |+
T Consensus        99 iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW----------VsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   99 INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW----------VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eccceeeEeecCcCceEEeccCccEEEEEEEeccccee----------hhhhhCCccccceeeeeccCCcceecccccCc
Confidence            88999999999999999999999999999887432110          01111223345689999999999999987 99


Q ss_pred             EEEEEEc-----CC-------------ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          377 TLQWLSV-----ET-------------GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       377 ~i~i~d~-----~~-------------~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ..++|..     ++             |++..++ ....+-|..+.|+|.|        ..|+-.+.|+.+.+=|....
T Consensus       169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG--------~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSG--------NRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCC--------CEeeEecCCCceEEeecCCC
Confidence            8888854     11             2233333 2456789999999999        89999999999998887655

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=1.5e-14  Score=133.32  Aligned_cols=257  Identities=18%  Similarity=0.191  Sum_probs=164.8

Q ss_pred             CcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC-------CCCCCceEEEccCCCeEEEEeecCC
Q 013578           91 GDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSKSFKFLRINLP-------PGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        91 ~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ...|+.+.+-.  |..++++|+.||.||||+-........+......+       ..+.-.-+.|.....+|++++.   
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd--- 1185 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD--- 1185 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC---
Confidence            45688888875  55789999999999999854332111122221111       1111245677777777776654   


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc-
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-  240 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-  240 (440)
                      ...+.+|+..+...........                ...+...     ......|+ ++++|..||.|++||.+... 
T Consensus      1186 ~r~IRIWDa~~E~~~~diP~~s----------------~t~vTaL-----S~~~~~gn-~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGS----------------STLVTAL-----SADLVHGN-IIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred             eeEEEEEecccceeEeecccCC----------------Cccceee-----cccccCCc-eEEEeecCCceEEeecccCCc
Confidence            4688888877653222111100                0000000     01122344 89999999999999987543 


Q ss_pred             --eeeeeeCCCCc--ccEEEecCCCCe-EEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc--c-ceEEEEEcCCCC
Q 013578          241 --LLGNVDTNQLK--NNMAAISPNGRF-LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK--S-AVTWLCFAPNSE  312 (440)
Q Consensus       241 --~~~~~~~~~~~--v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~--~-~v~~~~~~p~~~  312 (440)
                        .+..++.|+..  |..+.+.+.|-. |++|+.||.|++||++.....      .......|.  + ..+++..|+...
T Consensus      1244 ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e------~~~~iv~~~~yGs~lTal~VH~hap 1317 (1387)
T KOG1517|consen 1244 DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE------TFLTIVAHWEYGSALTALTVHEHAP 1317 (1387)
T ss_pred             cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc------ccceeeeccccCccceeeeeccCCC
Confidence              45666677766  888888887654 999999999999999874211      111222222  3 589999999999


Q ss_pred             EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc
Q 013578          313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK  387 (440)
Q Consensus       313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~  387 (440)
                      .+|+|+. +.|+||++......     ..+..+...   ......+.+++|+|-.-++|+|. |..|.||.....+
T Consensus      1318 iiAsGs~-q~ikIy~~~G~~l~-----~~k~n~~F~---~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1318 IIASGSA-QLIKIYSLSGEQLN-----IIKYNPGFM---GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             eeeecCc-ceEEEEecChhhhc-----ccccCcccc---cCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            9999998 89999999754321     111111111   12233468999999999999987 8999999876554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=5.8e-14  Score=127.80  Aligned_cols=224  Identities=13%  Similarity=0.154  Sum_probs=143.5

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeC---CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACA---DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~---dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      .+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.++...      ......+.+...+|+|||+.++..... 
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~------~l~~~~g~~~~~~~SPDG~~la~~~~~-  266 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE------LVGNFPGMTFAPRFSPDGRKVVMSLSQ-  266 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE------EeecCCCcccCcEECCCCCEEEEEEec-
Confidence            3456678889999999999999988764   468999999876432      112233556778888888876543211 


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK  240 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  240 (440)
                                                                                       .....|++||+.+++
T Consensus       267 -----------------------------------------------------------------~g~~~Iy~~d~~~~~  281 (435)
T PRK05137        267 -----------------------------------------------------------------GGNTDIYTMDLRSGT  281 (435)
T ss_pred             -----------------------------------------------------------------CCCceEEEEECCCCc
Confidence                                                                             012347778887765


Q ss_pred             eeeeeeCCCCcccEEEecCCCCeEEEEec-CC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578          241 LLGNVDTNQLKNNMAAISPNGRFLAAAAF-TA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  317 (440)
                      . ..+..+........|+|||+.|+..+. +|  .|+++|+..+.         ...+..+...+....|+|+|++|+..
T Consensus       282 ~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---------~~~lt~~~~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        282 T-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---------PRRISFGGGRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             e-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---------eEEeecCCCcccCeEECCCCCEEEEE
Confidence            5 334444555667899999999887764 44  46666654322         22232234556778999999999877


Q ss_pred             eCC---CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C-----CEEEEEEcCCcc
Q 013578          318 SKD---GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G-----STLQWLSVETGK  387 (440)
Q Consensus       318 ~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~-----~~i~i~d~~~~~  387 (440)
                      +.+   ..|.+||+.++..        +.+.     ..   ..+...+|+|||+.|+...  .     ..++++|+..+.
T Consensus       352 ~~~~~~~~i~~~d~~~~~~--------~~lt-----~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        352 KQGGGQFSIGVMKPDGSGE--------RILT-----SG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             EcCCCceEEEEEECCCCce--------Eecc-----CC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            643   2577788754321        1110     01   1245689999999887632  1     368888887665


Q ss_pred             chhhhhccccCCeEEEEecCC
Q 013578          388 VLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       388 ~~~~~~~~h~~~v~~v~~~~~  408 (440)
                      . ..+.  ..+.+...+|+|-
T Consensus       416 ~-~~l~--~~~~~~~p~Wsp~  433 (435)
T PRK05137        416 E-REVP--TPGDASDPAWSPL  433 (435)
T ss_pred             e-EEcc--CCCCccCcccCCC
Confidence            4 3332  3445777888874

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=6.4e-14  Score=126.86  Aligned_cols=224  Identities=18%  Similarity=0.250  Sum_probs=140.4

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCC---CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACAD---GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~d---g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      +.+..|.+.+.+.+|+|||+.|+..+.+   ..|.+||+.++...   .+   ....+.....+|+|||+.++...    
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~---~l---~~~~g~~~~~~~SPDG~~la~~~----  258 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR---VV---ANFKGSNSAPAWSPDGRTLAVAL----  258 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE---Ee---ecCCCCccceEECCCCCEEEEEE----
Confidence            3455677889999999999999887643   35999999876432   11   11224456788888887665432    


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce--EEEEeCCCC
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD--ISIWHGKTG  239 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~vwd~~~~  239 (440)
                                                                                      +.++.  |+++|+..+
T Consensus       259 ----------------------------------------------------------------~~~g~~~Iy~~d~~~~  274 (427)
T PRK02889        259 ----------------------------------------------------------------SRDGNSQIYTVNADGS  274 (427)
T ss_pred             ----------------------------------------------------------------ccCCCceEEEEECCCC
Confidence                                                                            22222  444555544


Q ss_pred             ceeeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578          240 KLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                      . ...+..+........|+|||+.|+..+. +|...+|.+..... .      ...+..+.......+|+|+|++|+..+
T Consensus       275 ~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-~------~~~lt~~g~~~~~~~~SpDG~~Ia~~s  346 (427)
T PRK02889        275 G-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-A------AQRVTFTGSYNTSPRISPDGKLLAYIS  346 (427)
T ss_pred             C-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-c------eEEEecCCCCcCceEECCCCCEEEEEE
Confidence            4 3444444444567889999998887664 56778887753321 1      111111223344678999999998777


Q ss_pred             CCC---cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CEEEEEEcCCccchhh
Q 013578          319 KDG---TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--STLQWLSVETGKVLDT  391 (440)
Q Consensus       319 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~i~i~d~~~~~~~~~  391 (440)
                      .++   .|.+||+.++...        .+    .. ..   ......|+|||+.|+.+.  +  ..+++.+. +|+....
T Consensus       347 ~~~g~~~I~v~d~~~g~~~--------~l----t~-~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~  409 (427)
T PRK02889        347 RVGGAFKLYVQDLATGQVT--------AL----TD-TT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQR  409 (427)
T ss_pred             ccCCcEEEEEEECCCCCeE--------Ec----cC-CC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEE
Confidence            554   5999998765321        00    00 00   124589999999888754  2  34666676 4555555


Q ss_pred             hhccccCCeEEEEecCC
Q 013578          392 AEKAHEGEITCMAWAPK  408 (440)
Q Consensus       392 ~~~~h~~~v~~v~~~~~  408 (440)
                      + ..+.+.+...+|+|-
T Consensus       410 l-~~~~g~~~~p~wsp~  425 (427)
T PRK02889        410 L-SVQGGDVREPSWGPF  425 (427)
T ss_pred             e-ecCCCCCCCCccCCC
Confidence            5 356778888899884

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=5.4e-15  Score=126.37  Aligned_cols=197  Identities=20%  Similarity=0.238  Sum_probs=125.7

Q ss_pred             cCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccccccc
Q 013578          101 SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK  180 (440)
Q Consensus       101 ~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (440)
                      |++--|+.|=.-|.|.+.|....+... .+-....-....|+++.|.|.+..++++....  ..+++++...........
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~s--Gnlyly~~~~~~~~t~p~  259 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDSLFLVAHAS--GNLYLYDKEIVCGATAPS  259 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCceEEEEEec--CceEEeeccccccCCCCc
Confidence            345556666666777777755421110 00011111237899999999888777776653  345555443222111111


Q ss_pred             ccCCCCCCc---eeeccccc--ccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEE
Q 013578          181 QQSKLPGPE---IKWEHHKV--HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA  255 (440)
Q Consensus       181 ~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  255 (440)
                      .........   ..|.....  ...+...........++++||+ +|++.+.||.+||||..+.+.+..++.--+...|+
T Consensus       260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCv  338 (636)
T KOG2394|consen  260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCV  338 (636)
T ss_pred             ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEE
Confidence            110000000   01111111  0011112222445567789999 99999999999999999988887777767789999


Q ss_pred             EecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578          256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP  309 (440)
Q Consensus       256 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  309 (440)
                      +|||||++|++|++|--|.||.+...+        .+..-++|+++|..++|.|
T Consensus       339 cWSPDGKyIvtGGEDDLVtVwSf~erR--------VVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  339 CWSPDGKYIVTGGEDDLVTVWSFEERR--------VVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEcCCccEEEecCCcceEEEEEeccce--------EEEeccccccceeeEeecc
Confidence            999999999999999999999996655        7888899999999999983

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=3.1e-14  Score=117.10  Aligned_cols=222  Identities=16%  Similarity=0.220  Sum_probs=161.4

Q ss_pred             ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      ..+-+++|..++.. || .|++|-.+|.+.+|....+..........  ..+.++..+.-++...++++.+.......+.
T Consensus       101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lk  176 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELK  176 (412)
T ss_pred             cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhccccee
Confidence            34456677777765 33 78888999999999998654322222222  2336778888888888888877665567788


Q ss_pred             eecccccccccccccc--CCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-ceee
Q 013578          167 MYGEEKAISTNEGKQQ--SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KLLG  243 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~  243 (440)
                      +|+.+........+..  ..+....-.|..               ...+..++..+.|++++.-+.|++||.+.+ +++.
T Consensus       177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~t---------------di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~  241 (412)
T KOG3881|consen  177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWIT---------------DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA  241 (412)
T ss_pred             eeecccceeeeeccCCCCccccceeeeeec---------------cceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence            8888776444333321  111112222221               111112222458999999999999999865 5788


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL  323 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i  323 (440)
                      .+...+.+++++...|+++++++|...|.+..||++.+.       .....+++..+.|++|..+|.+++|++++-|..|
T Consensus       242 ~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-------l~g~~~kg~tGsirsih~hp~~~~las~GLDRyv  314 (412)
T KOG3881|consen  242 QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK-------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYV  314 (412)
T ss_pred             EeccccCcceeeeecCCCcEEEEecccchhheecccCce-------eeccccCCccCCcceEEEcCCCceEEeeccceeE
Confidence            888889999999999999999999999999999998776       1334488889999999999999999999999999


Q ss_pred             EEEecCccccc
Q 013578          324 RVWNINVRYHL  334 (440)
Q Consensus       324 ~iwd~~~~~~~  334 (440)
                      ||+|+.+...+
T Consensus       315 RIhD~ktrkll  325 (412)
T KOG3881|consen  315 RIHDIKTRKLL  325 (412)
T ss_pred             EEeecccchhh
Confidence            99999985543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=3.9e-14  Score=116.62  Aligned_cols=274  Identities=11%  Similarity=0.141  Sum_probs=178.0

Q ss_pred             CCCCCCCCCCcccCcc----------ccccccc-cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC
Q 013578           67 SHSHGDKDQNKRHHPL----------DVNTLKG-HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL  135 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~----------~~~~l~~-H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~  135 (440)
                      -.+++..|...++|..          ++..... |...|.|++|....++|.+|+.+++|.+-|+++.+..   ......
T Consensus        70 ~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi---~V~~~~  146 (609)
T KOG4227|consen   70 FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI---YVANEN  146 (609)
T ss_pred             EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceee---eeeccc
Confidence            3466777777777743          3443333 5689999999999999999999999999999876421   111111


Q ss_pred             CCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC
Q 013578          136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT  215 (440)
Q Consensus       136 ~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (440)
                      ...+.|+.+..+|..                                                                 
T Consensus       147 ~~~~~VY~m~~~P~D-----------------------------------------------------------------  161 (609)
T KOG4227|consen  147 NNRGDVYHMDQHPTD-----------------------------------------------------------------  161 (609)
T ss_pred             CcccceeecccCCCC-----------------------------------------------------------------
Confidence            112345554444432                                                                 


Q ss_pred             CCCCeEEEEeeCCceEEEEeCCCCc-ee--eeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578          216 ADGSTIIASCSEGTDISIWHGKTGK-LL--GNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       216 ~~~~~~l~s~~~d~~i~vwd~~~~~-~~--~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                         . .+++.+.++.|.+||.+... ..  ..+.........+.|+|. ..+|++.+..+-+-+||.+.......    .
T Consensus       162 ---N-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~----~  233 (609)
T KOG4227|consen  162 ---N-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY----Q  233 (609)
T ss_pred             ---c-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH----h
Confidence               2 67888889999999988654 21  112222344567788985 56788888899999999976542110    1


Q ss_pred             eeeeeccc---cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccccc-ccCCCCCeeeeeeEEeCCCC
Q 013578          292 VMQLKGHK---SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIP-LLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       292 ~~~~~~h~---~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~g  367 (440)
                      ...+.+..   ..-.++.|+|+|..|.+.-....-.+||+-...+..        +... -.......+.+.+++|.-|-
T Consensus       234 ~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V--------~k~D~N~~GY~N~~T~KS~~F~~D~  305 (609)
T KOG4227|consen  234 RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV--------LKSDHNPNGYCNIKTIKSMTFIDDY  305 (609)
T ss_pred             hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee--------EeccCCCCcceeeeeeeeeeeecce
Confidence            11111211   223578899999999887766666778887543321        0000 00011234456778887776


Q ss_pred             CEEEEec-CCEEEEEEcCCc----------c-------------chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEe
Q 013578          368 KILAATH-GSTLQWLSVETG----------K-------------VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATS  423 (440)
Q Consensus       368 ~~l~~~~-~~~i~i~d~~~~----------~-------------~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~  423 (440)
                      . +++|+ +=.|++|.+...          .             .+..+ ++|..-++.|.|+|..        .+|++.
T Consensus       306 ~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL-rGHRSv~NQVRF~~H~--------~~l~SS  375 (609)
T KOG4227|consen  306 T-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL-RGHRSVPNQVRFSQHN--------NLLVSS  375 (609)
T ss_pred             e-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE-ecccccccceeecCCc--------ceEecc
Confidence            6 66666 568999976321          1             11122 6899999999999997        789999


Q ss_pred             eCCCeEEEEeC
Q 013578          424 SVDKKVKLWLA  434 (440)
Q Consensus       424 ~~Dg~i~vw~~  434 (440)
                      |-...+++|.-
T Consensus       376 GVE~~~KlWS~  386 (609)
T KOG4227|consen  376 GVENSFKLWSD  386 (609)
T ss_pred             chhhheecccc
Confidence            99999999974

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.63  E-value=5e-14  Score=112.02  Aligned_cols=154  Identities=25%  Similarity=0.445  Sum_probs=108.2

Q ss_pred             eEEEEccCCCEEEEeeC----------CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578           95 TGLCFSSDGKCLATACA----------DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS  164 (440)
Q Consensus        95 ~~l~~s~dg~~l~t~s~----------dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~  164 (440)
                      -.+.|+|+|++|+.-..          -|...+|.++.....   .........++|.+++|+|+++.++++        
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l~~~~~I~~~~WsP~g~~favi--------   77 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIELKKEGPIHDVAWSPNGNEFAVI--------   77 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeeccCCCceEEEEECcCCCEEEEE--------
Confidence            35789999987765332          244667777543322   222233344679999999998865433        


Q ss_pred             EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee
Q 013578          165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN  244 (440)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  244 (440)
                                                                                 .|..++.|.+||++ ++.+..
T Consensus        78 -----------------------------------------------------------~g~~~~~v~lyd~~-~~~i~~   97 (194)
T PF08662_consen   78 -----------------------------------------------------------YGSMPAKVTLYDVK-GKKIFS   97 (194)
T ss_pred             -----------------------------------------------------------EccCCcccEEEcCc-ccEeEe
Confidence                                                                       34445679999996 666666


Q ss_pred             eeCCCCcccEEEecCCCCeEEEEec---CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC--
Q 013578          245 VDTNQLKNNMAAISPNGRFLAAAAF---TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK--  319 (440)
Q Consensus       245 ~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~--  319 (440)
                      +.  ...+..+.|+|+|++|++++.   .|.|.+||++..+        .+.... | ..++.++|+|+|++|+++..  
T Consensus        98 ~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~--------~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~  165 (194)
T PF08662_consen   98 FG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK--------KISTFE-H-SDATDVEWSPDGRYLATATTSP  165 (194)
T ss_pred             ec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE--------Eeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence            64  456788999999999999874   4679999997443        344332 3 34789999999999998864  


Q ss_pred             ----CCcEEEEecCcc
Q 013578          320 ----DGTLRVWNINVR  331 (440)
Q Consensus       320 ----dg~i~iwd~~~~  331 (440)
                          |..++||+....
T Consensus       166 r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  166 RLRVDNGFKIWSFQGR  181 (194)
T ss_pred             ceeccccEEEEEecCe
Confidence                788999998643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=5.5e-14  Score=115.69  Aligned_cols=187  Identities=18%  Similarity=0.279  Sum_probs=141.1

Q ss_pred             EEEEeeCCceEEEEeCCCCc----eeeeeeCCCCcccEEEecCC-CCeEEEEecC--CCEEEEEeEecCCCceeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGK----LLGNVDTNQLKNNMAAISPN-GRFLAAAAFT--ADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      .|++|-.+|.+.+|..+.+.    .+..+..+ ..+..+.-++. ..++++|+..  ..+.+||+...+        .+.
T Consensus       117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--------qiw  187 (412)
T KOG3881|consen  117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--------QIW  187 (412)
T ss_pred             EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce--------eee
Confidence            68889999999999988543    23333333 23444554554 4556668888  789999986553        111


Q ss_pred             eee-------c--cccceEEEEEcCC--CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          294 QLK-------G--HKSAVTWLCFAPN--SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       294 ~~~-------~--h~~~v~~~~~~p~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                      .-+       +  -.-+++++.|-|.  ...|++++.-+.|++||.+.++.             |+....-....++++.
T Consensus       188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-------------PV~~fd~~E~~is~~~  254 (412)
T KOG3881|consen  188 SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-------------PVAQFDFLENPISSTG  254 (412)
T ss_pred             eccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-------------ceeEeccccCcceeee
Confidence            111       1  1235778999887  78899999999999999985533             1222223355688999


Q ss_pred             eCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          363 LSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       363 ~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ..|+|.++.+|. -+.+..||.+.++.+....++-.+.|.++..+|..        .+|+++|-|..|||+|+.+-
T Consensus       255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~--------~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH--------PVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCC--------ceEEeeccceeEEEeecccc
Confidence            999999999987 79999999999999988557899999999999998        89999999999999999873

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.63  E-value=1.3e-13  Score=124.27  Aligned_cols=203  Identities=13%  Similarity=0.071  Sum_probs=138.9

Q ss_pred             EEEEeeCCceEEEEeCCCCce--eee----eeCCCCcccEEEecCCC--CeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKL--LGN----VDTNQLKNNMAAISPNG--RFLAAAAFTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~--~~~----~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                      +++.|..+|.|.+||++.+..  ...    ...|..++..+.|-.+.  .-|++++.||.|..|+++.-...........
T Consensus       257 ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~  336 (555)
T KOG1587|consen  257 LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES  336 (555)
T ss_pred             eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc
Confidence            788889999999999987654  222    23577788888886643  4599999999999998865432110000000


Q ss_pred             ee----eeccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578          293 MQ----LKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       293 ~~----~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  367 (440)
                      ..    -......+++++|.|. -..|+.|+.+|.|.--+-........      ..-........|...|..+.++|-+
T Consensus       337 ~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------~~~~~~~~~~~h~g~v~~v~~nPF~  410 (555)
T KOG1587|consen  337 KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------VSYKGHSTFITHIGPVYAVSRNPFY  410 (555)
T ss_pred             ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc------ccccccccccccCcceEeeecCCCc
Confidence            00    0012346889999884 45789999999887633322111000      0011122344566779999999987


Q ss_pred             C-EEEEecCCEEEEEEcC-CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          368 K-ILAATHGSTLQWLSVE-TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       368 ~-~l~~~~~~~i~i~d~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      . ++.++.|-.++||... ...++..+ ..+...|++++|+|..+       ..++++..||.|.+||+...
T Consensus       411 ~k~fls~gDW~vriWs~~~~~~Pl~~~-~~~~~~v~~vaWSptrp-------avF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  411 PKNFLSVGDWTVRIWSEDVIASPLLSL-DSSPDYVTDVAWSPTRP-------AVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             cceeeeeccceeEeccccCCCCcchhh-hhccceeeeeEEcCcCc-------eEEEEEcCCCceehhhhhcc
Confidence            6 4445669999999988 66777777 46778899999999864       78999999999999999653

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.63  E-value=4.4e-14  Score=112.36  Aligned_cols=149  Identities=19%  Similarity=0.366  Sum_probs=105.9

Q ss_pred             cEEEecCCCCeEEEEec----------CCCEEEEEeEecCCCceeeeeeeeeeec-cccceEEEEEcCCCCEEEEE--eC
Q 013578          253 NMAAISPNGRFLAAAAF----------TADVKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAPNSEQIITA--SK  319 (440)
Q Consensus       253 ~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~--~~  319 (440)
                      ..+.|+++|++|++-..          -|...+|.++....       ....+.- ..++|.+++|+|+|+.|+..  ..
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-------~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~   81 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-------PVESIELKKEGPIHDVAWSPNGNEFAVIYGSM   81 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-------ccceeeccCCCceEEEEECcCCCEEEEEEccC
Confidence            35788999988776543          13456666644331       1222222 34579999999999987654  45


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec----CCEEEEEEcCCccchhhhhcc
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH----GSTLQWLSVETGKVLDTAEKA  395 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~i~i~d~~~~~~~~~~~~~  395 (440)
                      +..|.+||++.. .+              ....  ...+..+.|+|+|++|+.++    .|.|.+||..+.+.+....  
T Consensus        82 ~~~v~lyd~~~~-~i--------------~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--  142 (194)
T PF08662_consen   82 PAKVTLYDVKGK-KI--------------FSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--  142 (194)
T ss_pred             CcccEEEcCccc-Ee--------------Eeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--
Confidence            779999999622 11              1111  12356799999999999864    4789999999998887763  


Q ss_pred             ccCCeEEEEecCCCCCCCCCcceEEEEeeC------CCeEEEEeCCC
Q 013578          396 HEGEITCMAWAPKTIPMGNQQVSVLATSSV------DKKVKLWLAPS  436 (440)
Q Consensus       396 h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~------Dg~i~vw~~~~  436 (440)
                      |. .++.++|+|+|        ++|+++..      |+.++||++..
T Consensus       143 ~~-~~t~~~WsPdG--------r~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  143 HS-DATDVEWSPDG--------RYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             cC-cEEEEEEcCCC--------CEEEEEEeccceeccccEEEEEecC
Confidence            44 47899999999        89998875      78899999864

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.63  E-value=5.2e-15  Score=118.91  Aligned_cols=172  Identities=19%  Similarity=0.252  Sum_probs=116.3

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeE-EEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFL-AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK  299 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  299 (440)
                      ++.....++.|.+|++...+-...++.....+..+.|||||+.+ .+...+-+|.+|.+.+.+         ...++-.+
T Consensus        63 ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~---------~~~~~~pK  133 (447)
T KOG4497|consen   63 ILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK---------GYLLPHPK  133 (447)
T ss_pred             eeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce---------eEEecccc
Confidence            55566778889999999988888888888999999999999654 555668999999997654         22233234


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec---CC
Q 013578          300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH---GS  376 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~~  376 (440)
                      ..+..++|+|||++.+.+++-.....+++...+    .-..       .....-.....+.+.|+|||..||+=+   +-
T Consensus       134 ~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~----~W~l-------l~~f~~dT~DltgieWsPdg~~laVwd~~Ley  202 (447)
T KOG4497|consen  134 TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK----AWIL-------LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY  202 (447)
T ss_pred             cCceeEEECCCCceeeeeecccHHHHHHHHhhH----HHHH-------HHhcCCCcccccCceECCCCcEEEEecchhhh
Confidence            456899999999998877753211111111000    0000       011111122355799999999988632   33


Q ss_pred             EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      .|+.|.             -.-.+..++|+|.+        ++|+.|+.|+.+||-+
T Consensus       203 kv~aYe-------------~~lG~k~v~wsP~~--------qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  203 KVYAYE-------------RGLGLKFVEWSPCN--------QFLAVGSYDQMLRVLN  238 (447)
T ss_pred             eeeeee-------------eccceeEEEecccc--------ceEEeeccchhhhhhc
Confidence            444332             22468899999987        8999999999998854

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.62  E-value=3.5e-14  Score=110.68  Aligned_cols=145  Identities=12%  Similarity=0.158  Sum_probs=110.3

Q ss_pred             EEEEeeCCceEEEEeCCCCcee----------eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLL----------GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~----------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  290 (440)
                      ++++|-++|.+.+||+.++..+          ..+..|..++.++.+.+.-..=++|+.+..+..|.+.....    ...
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g----slq  242 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG----SLQ  242 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC----ccc
Confidence            6778889999999999987433          33345788899999988766678888889999999865431    111


Q ss_pred             eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                      ......-..-.|..+..-||++.+||++.|+.||+|..++...+              ....-|...|.+++|+|+..++
T Consensus       243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL--------------AVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL--------------AVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch--------------hhhhhhhcceeEEEeCCCCchh
Confidence            11222223456888999999999999999999999999876432              2223455779999999999988


Q ss_pred             EEec-CCEEEEEEc
Q 013578          371 AATH-GSTLQWLSV  383 (440)
Q Consensus       371 ~~~~-~~~i~i~d~  383 (440)
                      |.++ |+.|.+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            8876 999999985

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=4.8e-13  Score=109.47  Aligned_cols=176  Identities=14%  Similarity=0.164  Sum_probs=131.1

Q ss_pred             CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee---ccccceEE
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK---GHKSAVTW  304 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~h~~~v~~  304 (440)
                      .+.+++++.+.+..+..+.. ..+|.++.++.  +.|++.-.+ .|+|||++..+        .++++.   .+...+..
T Consensus        67 pr~Lkv~~~Kk~~~ICe~~f-pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mk--------lLhTI~t~~~n~~gl~A  134 (391)
T KOG2110|consen   67 PRKLKVVHFKKKTTICEIFF-PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMK--------LLHTIETTPPNPKGLCA  134 (391)
T ss_pred             CceEEEEEcccCceEEEEec-CCceEEEEEcc--ceEEEEEcc-cEEEEecccce--------eehhhhccCCCccceEe
Confidence            34588999888877776654 34677777765  456666544 49999997665        444443   34445666


Q ss_pred             EEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecC--CEEEE
Q 013578          305 LCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG--STLQW  380 (440)
Q Consensus       305 ~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~i~i  380 (440)
                      +++++.+.+|+--+  ..|.|.+||+.+...              ......|...+.+++|+++|.+||++++  -.|||
T Consensus       135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~--------------v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV  200 (391)
T KOG2110|consen  135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQP--------------VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV  200 (391)
T ss_pred             eccCCCCceEEecCCCCCceEEEEEccccee--------------eeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence            66666667887433  468999999985432              2223467788999999999999999984  46799


Q ss_pred             EEcCCccchhhhhcccc-CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          381 LSVETGKVLDTAEKAHE-GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       381 ~d~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      |.+.+|+.+.++.+|-. ..|.+++|+|++        .+|++.|+.++|+||+++..
T Consensus       201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds--------~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDS--------QFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEcCCccEeeeeeCCceeeEEEEEEECCCC--------CeEEEecCCCeEEEEEeccc
Confidence            99999999998864433 368999999998        89999999999999999754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=6.1e-13  Score=120.33  Aligned_cols=172  Identities=22%  Similarity=0.201  Sum_probs=108.8

Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEE-ecCC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAA-AFTA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL  305 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~  305 (440)
                      ..|++|++.+++..... ........+.|+|||+.|+.. +.+|  .|++||+..+.         ...+..+...+...
T Consensus       223 ~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---------~~~lt~~~~~~~~~  292 (429)
T PRK03629        223 SALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---------IRQVTDGRSNNTEP  292 (429)
T ss_pred             cEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---------EEEccCCCCCcCce
Confidence            45888888877543222 222334568999999988865 4455  47888875443         23333344567889


Q ss_pred             EEcCCCCEEEEEeC-CCcEEEE--ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec----CCEE
Q 013578          306 CFAPNSEQIITASK-DGTLRVW--NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH----GSTL  378 (440)
Q Consensus       306 ~~~p~~~~l~s~~~-dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~i  378 (440)
                      .|+|||+.|+..+. ++...||  |+.++..        ..+.    . .  ........|+|||++++...    ...|
T Consensus       293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--------~~lt----~-~--~~~~~~~~~SpDG~~Ia~~~~~~g~~~I  357 (429)
T PRK03629        293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--------QRIT----W-E--GSQNQDADVSSDGKFMVMVSSNGGQQHI  357 (429)
T ss_pred             EECCCCCEEEEEeCCCCCceEEEEECCCCCe--------EEee----c-C--CCCccCEEECCCCCEEEEEEccCCCceE
Confidence            99999998877665 3455555  5543311        1110    0 1  11234688999999888643    2468


Q ss_pred             EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe---EEEEeCCC
Q 013578          379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK---VKLWLAPS  436 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~---i~vw~~~~  436 (440)
                      ++||+.+++... +...  .......|+||+        ++|+.++.|+.   +.+++++.
T Consensus       358 ~~~dl~~g~~~~-Lt~~--~~~~~p~~SpDG--------~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        358 AKQDLATGGVQV-LTDT--FLDETPSIAPNG--------TMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             EEEECCCCCeEE-eCCC--CCCCCceECCCC--------CEEEEEEcCCCceEEEEEECCC
Confidence            899998886432 2112  234567899998        88888887764   67777754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=3.9e-14  Score=121.61  Aligned_cols=207  Identities=21%  Similarity=0.266  Sum_probs=143.6

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeee-CCCCcccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCcee--eeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVD-TNQLKNNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVK--AVTSVMQL  295 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~  295 (440)
                      +|++|++|-.+.|||.-..+.+..+. +|...|.++.|-|  +.+.+++|..|..|++||+...+.+...  .......+
T Consensus        64 lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~  143 (758)
T KOG1310|consen   64 LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW  143 (758)
T ss_pred             EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh
Confidence            78888999999999998888877774 6888899999988  5678999999999999999764432221  12245556


Q ss_pred             eccccceEEEEEcCCC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEe
Q 013578          296 KGHKSAVTWLCFAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAAT  373 (440)
Q Consensus       296 ~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~  373 (440)
                      ..|...|..|+-.|++ ..+.++++||+|+-+|++..............    ............++..+|... +||+|
T Consensus       144 ~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~----l~ny~~~lielk~ltisp~rp~~laVG  219 (758)
T KOG1310|consen  144 SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI----LVNYNPQLIELKCLTISPSRPYYLAVG  219 (758)
T ss_pred             hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH----HHHhchhhheeeeeeecCCCCceEEec
Confidence            7799999999999998 67889999999999999965433222211111    111122234567899999876 66665


Q ss_pred             c-CCEEEEEEcC--------Ccc----------chhhhhcccc-----------CCeEEEEecCCCCCCCCCcceEEEEe
Q 013578          374 H-GSTLQWLSVE--------TGK----------VLDTAEKAHE-----------GEITCMAWAPKTIPMGNQQVSVLATS  423 (440)
Q Consensus       374 ~-~~~i~i~d~~--------~~~----------~~~~~~~~h~-----------~~v~~v~~~~~~~~~~~~~~~~l~t~  423 (440)
                      . +--.++||.+        .+.          ++..+..+|.           ..++-+.|+|+|.       .+|++-
T Consensus       220 gsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGt-------ElLvs~  292 (758)
T KOG1310|consen  220 GSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGT-------ELLVSW  292 (758)
T ss_pred             CCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCc-------EEEEee
Confidence            4 7788999932        111          2222323333           1256788999972       466665


Q ss_pred             eCCCeEEEEeCCCCCC
Q 013578          424 SVDKKVKLWLAPSLES  439 (440)
Q Consensus       424 ~~Dg~i~vw~~~~~~~  439 (440)
                      +.+ .|+++++..+++
T Consensus       293 ~gE-hVYlfdvn~~~~  307 (758)
T KOG1310|consen  293 GGE-HVYLFDVNEDKS  307 (758)
T ss_pred             CCe-EEEEEeecCCCC
Confidence            544 599999987764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=9.4e-13  Score=119.93  Aligned_cols=174  Identities=16%  Similarity=0.149  Sum_probs=110.7

Q ss_pred             CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEE-EEecCCC--EEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLA-AAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW  304 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (440)
                      +..|++||+.+++.. .+......+....|+|||+.|+ +.+.++.  |++||+..+.         ...+..+......
T Consensus       225 ~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------~~~Lt~~~~~~~~  294 (435)
T PRK05137        225 RPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---------TTRLTDSPAIDTS  294 (435)
T ss_pred             CCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---------eEEccCCCCccCc
Confidence            356899999887653 3444455667889999999876 4455665  5566664432         3344445566778


Q ss_pred             EEEcCCCCEEEEEeC-CC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CE
Q 013578          305 LCFAPNSEQIITASK-DG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--ST  377 (440)
Q Consensus       305 ~~~~p~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~  377 (440)
                      ..|+|||+.|+..+. +|  .|.+||+.++..        +.+    ...   ...+....|+|||++|+...  .  ..
T Consensus       295 ~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~--------~~l----t~~---~~~~~~~~~SpdG~~ia~~~~~~~~~~  359 (435)
T PRK05137        295 PSYSPDGSQIVFESDRSGSPQLYVMNADGSNP--------RRI----SFG---GGRYSTPVWSPRGDLIAFTKQGGGQFS  359 (435)
T ss_pred             eeEcCCCCEEEEEECCCCCCeEEEEECCCCCe--------EEe----ecC---CCcccCeEECCCCCEEEEEEcCCCceE
Confidence            999999998887663 33  577777764321        111    000   12244688999999988743  2  46


Q ss_pred             EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC------CeEEEEeCCCC
Q 013578          378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD------KKVKLWLAPSL  437 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D------g~i~vw~~~~~  437 (440)
                      |.+||..++.. ..+.  +...+..+.|+||+        ++|+..+.+      ..+.++++..+
T Consensus       360 i~~~d~~~~~~-~~lt--~~~~~~~p~~spDG--------~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        360 IGVMKPDGSGE-RILT--SGFLVEGPTWAPNG--------RVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EEEEECCCCce-Eecc--CCCCCCCCeECCCC--------CEEEEEEccCCCCCcceEEEEECCCC
Confidence            88899865543 2332  22357788999998        666654442      25777777654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.59  E-value=4.2e-15  Score=124.79  Aligned_cols=195  Identities=20%  Similarity=0.222  Sum_probs=156.6

Q ss_pred             ecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce
Q 013578          207 FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV  286 (440)
Q Consensus       207 ~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  286 (440)
                      +++..+-++.+|+ +++.|+..|.|..+|..++.....+... ..|..+.|-.+.++||++ ....++|||-. +.    
T Consensus       130 FGPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-Gt----  201 (545)
T KOG1272|consen  130 FGPYHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GT----  201 (545)
T ss_pred             cCCeeeeecCCcc-EEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhh-hhceEEEecCC-Cc----
Confidence            3444445577888 8888889999999999999998888764 468888998888888887 57789999942 21    


Q ss_pred             eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC
Q 013578          287 KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD  366 (440)
Q Consensus       287 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  366 (440)
                          .++.++.| ..|..+.|-|..-+|++++..|.++--|+.++..+....           .   ....+..+.-+|-
T Consensus       202 ----ElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-----------t---~~G~~~vm~qNP~  262 (545)
T KOG1272|consen  202 ----ELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-----------T---GAGRTDVMKQNPY  262 (545)
T ss_pred             ----EEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-----------c---cCCccchhhcCCc
Confidence                45555544 578999999998899999999999999999886543211           1   1122445777788


Q ss_pred             CCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          367 GKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       367 g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +-.+-.|. +|+|.+|...+.+++..+. .|.++|.+|++.++|        +|++|.|.|..++|||++..
T Consensus       263 NaVih~GhsnGtVSlWSP~skePLvKiL-cH~g~V~siAv~~~G--------~YMaTtG~Dr~~kIWDlR~~  325 (545)
T KOG1272|consen  263 NAVIHLGHSNGTVSLWSPNSKEPLVKIL-CHRGPVSSIAVDRGG--------RYMATTGLDRKVKIWDLRNF  325 (545)
T ss_pred             cceEEEcCCCceEEecCCCCcchHHHHH-hcCCCcceEEECCCC--------cEEeecccccceeEeeeccc
Confidence            88887775 8999999999999998884 899999999999999        99999999999999999864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=9.6e-13  Score=119.67  Aligned_cols=173  Identities=22%  Similarity=0.209  Sum_probs=109.2

Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEE-EecCC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAA-AAFTA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL  305 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~  305 (440)
                      ..|++||+.+++... +........++.|+|||+.|+. .+.+|  .|++||+..+.         ...+..+.......
T Consensus       228 ~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---------~~~lt~~~~~~~~~  297 (433)
T PRK04922        228 SAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---------LTRLTNHFGIDTEP  297 (433)
T ss_pred             cEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---------eEECccCCCCccce
Confidence            458889988776533 2222334557899999997764 45555  48888875543         23344455556778


Q ss_pred             EEcCCCCEEEEEe-CCCc--EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CEE
Q 013578          306 CFAPNSEQIITAS-KDGT--LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--STL  378 (440)
Q Consensus       306 ~~~p~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~i  378 (440)
                      +|+|||++|+..+ .+|.  |.++|+.++...        .+.     ..+  ......+|+|||++++...  +  ..|
T Consensus       298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--------~lt-----~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I  362 (433)
T PRK04922        298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--------RLT-----FQG--NYNARASVSPDGKKIAMVHGSGGQYRI  362 (433)
T ss_pred             EECCCCCEEEEEECCCCCceEEEEECCCCCeE--------Eee-----cCC--CCccCEEECCCCCEEEEEECCCCceeE
Confidence            9999999888766 4455  555565543211        010     011  1123589999999988643  2  369


Q ss_pred             EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC---CeEEEEeCCCC
Q 013578          379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD---KKVKLWLAPSL  437 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D---g~i~vw~~~~~  437 (440)
                      .+||+.+++.. .+.  +........|+||+        ++|+..+.+   +.|.++++...
T Consensus       363 ~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG--------~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        363 AVMDLSTGSVR-TLT--PGSLDESPSFAPNG--------SMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEEECCCCCeE-ECC--CCCCCCCceECCCC--------CEEEEEEecCCceEEEEEECCCC
Confidence            99999888755 332  33345677999998        676665553   45777777543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.57  E-value=7.4e-12  Score=109.84  Aligned_cols=298  Identities=17%  Similarity=0.205  Sum_probs=158.7

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      +..+......-..+.|+|||+++++++.||.|.++|+.+.+..  ..    ...+.....+++++||++++++....  .
T Consensus        29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v--~~----i~~G~~~~~i~~s~DG~~~~v~n~~~--~  100 (369)
T PF02239_consen   29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV--AT----IKVGGNPRGIAVSPDGKYVYVANYEP--G  100 (369)
T ss_dssp             EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE--EE----EE-SSEEEEEEE--TTTEEEEEEEET--T
T ss_pred             EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE--EE----EecCCCcceEEEcCCCCEEEEEecCC--C
Confidence            4455544334445789999999999999999999999987521  11    12345678999999999999987663  3


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee-
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL-  242 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-  242 (440)
                      .+.+++..............      .....   ...       -...+..++....++++--+.+.|.+.|....+.+ 
T Consensus       101 ~v~v~D~~tle~v~~I~~~~------~~~~~---~~~-------Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen  101 TVSVIDAETLEPVKTIPTGG------MPVDG---PES-------RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             EEEEEETTT--EEEEEE--E------E-TTT---S----------EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             ceeEeccccccceeeccccc------ccccc---cCC-------CceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence            55555544331111000000      00000   000       01122335666645556566688988887765443 


Q ss_pred             -eeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeee----eeccccceEEEEEcCCCCEEE-
Q 013578          243 -GNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQ----LKGHKSAVTWLCFAPNSEQII-  315 (440)
Q Consensus       243 -~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~p~~~~l~-  315 (440)
                       ..+.. ........|+|++++++++. .+..|-++|....+        .+..    -..|..++..+ .+|....+. 
T Consensus       165 ~~~i~~-g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k--------~v~~i~~g~~p~~~~~~~~-php~~g~vw~  234 (369)
T PF02239_consen  165 VTTIKV-GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK--------LVALIDTGKKPHPGPGANF-PHPGFGPVWA  234 (369)
T ss_dssp             EEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE--------EEEEEE-SSSBEETTEEEE-EETTTEEEEE
T ss_pred             eeeecc-cccccccccCcccceeeecccccceeEEEeeccce--------EEEEeeccccccccccccc-cCCCcceEEe
Confidence             33333 33456789999999887754 46678888865432        1111    12344444444 234332221 


Q ss_pred             EE---------eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe----c-CCEEEEE
Q 013578          316 TA---------SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT----H-GSTLQWL  381 (440)
Q Consensus       316 s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~----~-~~~i~i~  381 (440)
                      +.         -....+.+||....+.+       +.++.     .+..   .-+..+|+++++.+.    . .+.|.++
T Consensus       235 ~~~~~~~~~~~ig~~~v~v~d~~~wkvv-------~~I~~-----~G~g---lFi~thP~s~~vwvd~~~~~~~~~v~vi  299 (369)
T PF02239_consen  235 TSGLGYFAIPLIGTDPVSVHDDYAWKVV-------KTIPT-----QGGG---LFIKTHPDSRYVWVDTFLNPDADTVQVI  299 (369)
T ss_dssp             EEBSSSSEEEEEE--TTT-STTTBTSEE-------EEEE------SSSS-----EE--TT-SEEEEE-TT-SSHT-EEEE
T ss_pred             eccccceecccccCCccccchhhcCeEE-------EEEEC-----CCCc---ceeecCCCCccEEeeccCCCCCceEEEE
Confidence            11         11223444554433222       11111     1111   247789999999986    2 3899999


Q ss_pred             EcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEE-EEeeC-CCeEEEEeCCCCC
Q 013578          382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL-ATSSV-DKKVKLWLAPSLE  438 (440)
Q Consensus       382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l-~t~~~-Dg~i~vw~~~~~~  438 (440)
                      |.++.+....+..+-...+..+.|+++|        +.+ +|.-. ++.|.|||..+.+
T Consensus       300 D~~tl~~~~~i~~~~~~~~~h~ef~~dG--------~~v~vS~~~~~~~i~v~D~~Tl~  350 (369)
T PF02239_consen  300 DKKTLKVVKTITPGPGKRVVHMEFNPDG--------KEVWVSVWDGNGAIVVYDAKTLK  350 (369)
T ss_dssp             ECCGTEEEE-HHHHHT--EEEEEE-TTS--------SEEEEEEE--TTEEEEEETTTTE
T ss_pred             ECcCcceeEEEeccCCCcEeccEECCCC--------CEEEEEEecCCCEEEEEECCCcE
Confidence            9999988877754444469999999998        433 33333 3489999998865

...

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.57  E-value=2.8e-12  Score=103.05  Aligned_cols=178  Identities=14%  Similarity=0.274  Sum_probs=126.1

Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc--cceEEEE
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK--SAVTWLC  306 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~  306 (440)
                      ..|.|||-....++.++.. ..+|..+.+.++  .|++. ..++|+||......       +.++.+....  ...-++.
T Consensus        75 NkviIWDD~k~~~i~el~f-~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~-------k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSF-NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNP-------KLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             ceEEEEecccCcEEEEEEe-ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCCh-------hheeeeecccCCCceEeec
Confidence            4599999777788888765 567999998876  45444 46789999875322       1233332211  1122222


Q ss_pred             EcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEc
Q 013578          307 FAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSV  383 (440)
Q Consensus       307 ~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~  383 (440)
                      -+.+..+||.-+ .-|.|+|-|+.....     .       +......|...|.+++++-+|..+|+++  +-.|+|||.
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~-----~-------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt  211 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKP-----N-------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT  211 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCc-----C-------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc
Confidence            222334455433 568999999974321     0       1223357788899999999999999987  346899999


Q ss_pred             CCccchhhhhcccc-CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          384 ETGKVLDTAEKAHE-GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       384 ~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      .+|+.+.++..|-. ..|.+++|+|+.        .+|+.+|+-|++.||.+...
T Consensus       212 ~~g~~l~E~RRG~d~A~iy~iaFSp~~--------s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  212 EDGTLLQELRRGVDRADIYCIAFSPNS--------SWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CCCcEeeeeecCCchheEEEEEeCCCc--------cEEEEEcCCCeEEEEEeecC
Confidence            99999998865433 479999999998        89999999999999998754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.55  E-value=1.8e-14  Score=129.54  Aligned_cols=262  Identities=19%  Similarity=0.207  Sum_probs=190.3

Q ss_pred             CCCCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578           62 HSKPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP  137 (440)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~  137 (440)
                      +.+-....++..|.-+++|..    ++....||.+.|+.++.+.+..+++++|.|..|++|.+..+..     +....+|
T Consensus       199 Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p-----vsvLrgh  273 (1113)
T KOG0644|consen  199 DRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP-----VSVLRGH  273 (1113)
T ss_pred             ccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch-----HHHHhcc
Confidence            344455667788888888864    5778999999999999999999999999999999999988763     4566789


Q ss_pred             CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578          138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD  217 (440)
Q Consensus       138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (440)
                      .+.|++++|+|-                                                                    
T Consensus       274 tgavtaiafsP~--------------------------------------------------------------------  285 (1113)
T KOG0644|consen  274 TGAVTAIAFSPR--------------------------------------------------------------------  285 (1113)
T ss_pred             ccceeeeccCcc--------------------------------------------------------------------
Confidence            999999999984                                                                    


Q ss_pred             CCeEEEEeeCCceEEEEeCCCCceeeee----e-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578          218 GSTIIASCSEGTDISIWHGKTGKLLGNV----D-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                           .+.+.||++++||.+ .......    . .....+.++.|...+..+++|+.|+.-..|.+...           
T Consensus       286 -----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l-----------  348 (1113)
T KOG0644|consen  286 -----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL-----------  348 (1113)
T ss_pred             -----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh-----------
Confidence                 245678889999977 2222111    0 12344566777888889999999999888875321           


Q ss_pred             eeeeccccceEEEEEcCCC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          293 MQLKGHKSAVTWLCFAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                         ..+...+.-+.++.+- .+.+++-.+-.+.+|++.++...              +...+|...+..+.++|-+..++
T Consensus       349 ---~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~--------------H~l~ghsd~~yvLd~Hpfn~ri~  411 (1113)
T KOG0644|consen  349 ---AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL--------------HNLMGHSDEVYVLDVHPFNPRIA  411 (1113)
T ss_pred             ---hhhccceEEEeccccccccceeeeeeeEeeeeecccchhh--------------hhhcccccceeeeeecCCCcHhh
Confidence               1122222222222222 35566667788999999876432              33446666778899999888666


Q ss_pred             E--ecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          372 A--THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       372 ~--~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      -  |.||...|||+-.|..+.....+| +.+..-.|+++|        ..++....-|.+.|.....+++
T Consensus       412 msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdg--------ts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  412 MSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDG--------TSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             hhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCC--------ceEecCCCCCceEEeccCCCcc
Confidence            3  669999999999998887776564 457778899998        6777777778888877665543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.54  E-value=3.1e-11  Score=106.26  Aligned_cols=293  Identities=15%  Similarity=0.213  Sum_probs=165.5

Q ss_pred             EEEeeCC----CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC-CcceEEeecccccccccccc
Q 013578          106 LATACAD----GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL-SGCSLYMYGEEKAISTNEGK  180 (440)
Q Consensus       106 l~t~s~d----g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~  180 (440)
                      ++.|+..    +.|.+|+++....... .... ........-++++|++++|.++.... ....+..+........    
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~-~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~----   75 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLT-LVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT----   75 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEE-EEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE----
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCce-Eeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce----
Confidence            4555555    6899999855443322 2222 22335677899999999999987753 2333333332211000    


Q ss_pred             ccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cceeee---ee----------
Q 013578          181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GKLLGN---VD----------  246 (440)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~---~~----------  246 (440)
                                     -............++.+...++++.++++.-.++.|.++++.. +.....   +.          
T Consensus        76 ---------------L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~r  140 (345)
T PF10282_consen   76 ---------------LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDR  140 (345)
T ss_dssp             ---------------EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTT
T ss_pred             ---------------eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccc
Confidence                           0000000001122333455789996666666799999999986 333222   11          


Q ss_pred             CCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEE
Q 013578          247 TNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLR  324 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~  324 (440)
                      .......++.++|+++++++... ...|.+|++...... .... ....+ ........++|+|++++++... .+++|.
T Consensus       141 q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-l~~~-~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~  217 (345)
T PF10282_consen  141 QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-LTPV-DSIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVS  217 (345)
T ss_dssp             TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-EEEE-EEEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-EEEe-ecccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence            11234568999999999888754 346889988654311 1111 11122 2345578999999999886665 577899


Q ss_pred             EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcC--Cccc--hhhhhccccC
Q 013578          325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVE--TGKV--LDTAEKAHEG  398 (440)
Q Consensus       325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~--~~~~--~~~~~~~h~~  398 (440)
                      ++++.......   ..............+ ......++++|||++|.++.  .+.|.+|++.  ++++  +..+ .....
T Consensus       218 v~~~~~~~g~~---~~~~~~~~~~~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~-~~~G~  292 (345)
T PF10282_consen  218 VFDYDPSDGSL---TEIQTISTLPEGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV-PTGGK  292 (345)
T ss_dssp             EEEEETTTTEE---EEEEEEESCETTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE-EESSS
T ss_pred             EEeecccCCce---eEEEEeeeccccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE-eCCCC
Confidence            99988211100   011111100001111 12456799999999998865  6899999983  3433  2222 12234


Q ss_pred             CeEEEEecCCCCCCCCCcceEEEEee-CCCeEEEEeCC
Q 013578          399 EITCMAWAPKTIPMGNQQVSVLATSS-VDKKVKLWLAP  435 (440)
Q Consensus       399 ~v~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~i~vw~~~  435 (440)
                      ....++++|++        ++|+++. .++.|.+|+++
T Consensus       293 ~Pr~~~~s~~g--------~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  293 FPRHFAFSPDG--------RYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SEEEEEE-TTS--------SEEEEEETTTTEEEEEEEE
T ss_pred             CccEEEEeCCC--------CEEEEEecCCCeEEEEEEe
Confidence            58999999998        6777665 57899999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=3.3e-12  Score=115.78  Aligned_cols=167  Identities=19%  Similarity=0.208  Sum_probs=105.5

Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEE-EecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAA-AAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF  307 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (440)
                      ..|++||+.+++... +..........+|+|||+.|+. .+.+|...||.++....       ....+..+...+....|
T Consensus       220 ~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-------~~~~lt~~~~~~~~~~w  291 (427)
T PRK02889        220 PVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS-------GLRRLTQSSGIDTEPFF  291 (427)
T ss_pred             cEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC-------CcEECCCCCCCCcCeEE
Confidence            458999998886543 3223345568899999998874 56788888887754321       13334445555677899


Q ss_pred             cCCCCEEEEEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C---CEEEEEE
Q 013578          308 APNSEQIITASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G---STLQWLS  382 (440)
Q Consensus       308 ~p~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~---~~i~i~d  382 (440)
                      +|||++|+..+. +|...+|.+....      ...+.+.     ..+  ......+|+|||++|+... +   ..|++||
T Consensus       292 SpDG~~l~f~s~~~g~~~Iy~~~~~~------g~~~~lt-----~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d  358 (427)
T PRK02889        292 SPDGRSIYFTSDRGGAPQIYRMPASG------GAAQRVT-----FTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQD  358 (427)
T ss_pred             cCCCCEEEEEecCCCCcEEEEEECCC------CceEEEe-----cCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEE
Confidence            999998876553 5677777654211      0001110     011  1123578999999988654 2   2699999


Q ss_pred             cCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC
Q 013578          383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK  427 (440)
Q Consensus       383 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg  427 (440)
                      +.+++.....   .........|+||+        ++|+.++.++
T Consensus       359 ~~~g~~~~lt---~~~~~~~p~~spdg--------~~l~~~~~~~  392 (427)
T PRK02889        359 LATGQVTALT---DTTRDESPSFAPNG--------RYILYATQQG  392 (427)
T ss_pred             CCCCCeEEcc---CCCCccCceECCCC--------CEEEEEEecC
Confidence            9888754332   22334678999998        6666665543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.54  E-value=2.7e-12  Score=117.21  Aligned_cols=222  Identities=18%  Similarity=0.260  Sum_probs=136.0

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCC---CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACAD---GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~d---g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      .+.+..+...+...+|+|||++|+.++.+   ..|.+|++.++...      ....+.+.+.+++|+|+++.|+..... 
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~------~~~~~~~~~~~~~~spDg~~l~~~~~~-  254 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE------KVASFPGMNGAPAFSPDGSKLAVSLSK-  254 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE------EeecCCCCccceEECCCCCEEEEEECC-
Confidence            34455677789999999999999987654   47999999876422      111233456678888888766543211 


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK  240 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  240 (440)
                                                                                       ..+..|++||+.+++
T Consensus       255 -----------------------------------------------------------------~~~~~i~~~d~~~~~  269 (417)
T TIGR02800       255 -----------------------------------------------------------------DGNPDIYVMDLDGKQ  269 (417)
T ss_pred             -----------------------------------------------------------------CCCccEEEEECCCCC
Confidence                                                                             112347888887765


Q ss_pred             eeeeeeCCCCcccEEEecCCCCeEEEEec-CC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578          241 LLGNVDTNQLKNNMAAISPNGRFLAAAAF-TA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  317 (440)
                      .. .+..+........|+|+|+.|+..+. ++  .|+++|+..++         ...+..+...+....|+|+|++|+.+
T Consensus       270 ~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---------~~~l~~~~~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       270 LT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---------VRRLTFRGGYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             EE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---------EEEeecCCCCccCeEECCCCCEEEEE
Confidence            43 33333344456789999998877654 34  45556654322         22333345567788999999999888


Q ss_pred             eCCC---cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CEEEEEEcCCccchh
Q 013578          318 SKDG---TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--STLQWLSVETGKVLD  390 (440)
Q Consensus       318 ~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~i~i~d~~~~~~~~  390 (440)
                      +.++   .|.+||+.++..        ..+.     ...   .....+|+|||++|+...  +  ..+++.+.. +....
T Consensus       340 ~~~~~~~~i~~~d~~~~~~--------~~l~-----~~~---~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~  402 (417)
T TIGR02800       340 HREGGGFNIAVMDLDGGGE--------RVLT-----DTG---LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRA  402 (417)
T ss_pred             EccCCceEEEEEeCCCCCe--------EEcc-----CCC---CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-Cceee
Confidence            8765   788888875321        1110     000   123468999999887754  2  345665543 44444


Q ss_pred             hhhccccCCeEEEEe
Q 013578          391 TAEKAHEGEITCMAW  405 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~  405 (440)
                      .+. .+.+.+..++|
T Consensus       403 ~~~-~~~g~~~~~~w  416 (417)
T TIGR02800       403 RLP-LGNGDVREPAW  416 (417)
T ss_pred             ECC-CCCCCcCCCCC
Confidence            442 33455555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.1e-11  Score=107.12  Aligned_cols=281  Identities=18%  Similarity=0.240  Sum_probs=164.7

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC--------CcceE
Q 013578           94 VTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL--------SGCSL  165 (440)
Q Consensus        94 V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~--------~~~~~  165 (440)
                      =+-+.|||-|.||+|--.-| |.+|-=..-.     .++. ..| ..|.-+.|||+.++|++-+...        .+..+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~-----r~~R-F~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l  284 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFD-----RIQR-FYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL  284 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHH-----HHHh-ccC-CCceeeecCCccceEEEecCCccccCcccCCCceE
Confidence            35689999999999998777 8899543221     1111 223 5689999999999999987542        34667


Q ss_pred             Eeeccccccccccccc--cCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          166 YMYGEEKAISTNEGKQ--QSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                      .+|+...+........  .....-+.+.|                      +.|++ +++-...+ .|.||+..+..++.
T Consensus       285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frW----------------------S~DdK-y~Arm~~~-sisIyEtpsf~lld  340 (698)
T KOG2314|consen  285 IIWDIATGLLKRSFPVIKSPYLKWPIFRW----------------------SHDDK-YFARMTGN-SISIYETPSFMLLD  340 (698)
T ss_pred             EEEEccccchhcceeccCCCccccceEEe----------------------ccCCc-eeEEeccc-eEEEEecCceeeec
Confidence            7777766654433332  22222233334                      45555 55544443 37777765543332


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecC-----------------------------------------------------
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFT-----------------------------------------------------  270 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------------------------------------------------  270 (440)
                      .-...-..|....|+|.+++||.=...                                                     
T Consensus       341 ~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~  420 (698)
T KOG2314|consen  341 KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKV  420 (698)
T ss_pred             ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccc
Confidence            222222334555555555544421100                                                     


Q ss_pred             ----CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC---CCcEEEEecCccccccCCCCcccc
Q 013578          271 ----ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK---DGTLRVWNINVRYHLDEDPKTLKV  343 (440)
Q Consensus       271 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~  343 (440)
                          .++.|+.++...       -++..+ .....|...+|-|.|..+++.+.   ..++.+|.+++...   .+..+..
T Consensus       421 ~g~f~n~eIfrireKd-------Ipve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~---~~~lVk~  489 (698)
T KOG2314|consen  421 KGQFSNLEIFRIREKD-------IPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK---KPSLVKE  489 (698)
T ss_pred             cceEeeEEEEEeeccC-------CCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC---chhhhhh
Confidence                011222222111       011111 23567889999999998876653   35788998874211   1111111


Q ss_pred             ccccccCCCCCeeeeeeEEeCCCCCEEEEec----CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceE
Q 013578          344 LPIPLLDSNGATLQYDRLSLSSDGKILAATH----GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSV  419 (440)
Q Consensus       344 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~  419 (440)
                      +         .....+.+.|+|.|++++++.    .|.+.++|+.-..+...-...|. ..+.+.|.|.|        +|
T Consensus       490 ~---------dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtG--------RY  551 (698)
T KOG2314|consen  490 L---------DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTG--------RY  551 (698)
T ss_pred             h---------cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCC--------CE
Confidence            1         123466799999999998753    68999999985333322211233 57889999999        99


Q ss_pred             EEEeeC------CCeEEEEeCC
Q 013578          420 LATSSV------DKKVKLWLAP  435 (440)
Q Consensus       420 l~t~~~------Dg~i~vw~~~  435 (440)
                      ++|+++      |.--++|++.
T Consensus       552 vvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  552 VVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             EEEeeehhhhccccceEEEEee
Confidence            999987      4556777764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=9.6e-12  Score=113.60  Aligned_cols=224  Identities=16%  Similarity=0.214  Sum_probs=135.3

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCC---CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACAD---GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~d---g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      +.+..|...+...+|+|||+.|+..+.+   ..|.+|++.++....      .....+.+....|+|||+.++.....  
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~------l~~~~g~~~~~~~SpDG~~la~~~~~--  263 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ------ITNFEGLNGAPAWSPDGSKLAFVLSK--  263 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE------ccCCCCCcCCeEECCCCCEEEEEEcc--
Confidence            3455667788999999999999877644   358888887764321      11222345568899888876644311  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                                                                             +         .+..|++||+.+++.
T Consensus       264 -------------------------------------------------------~---------g~~~Iy~~d~~~~~~  279 (430)
T PRK00178        264 -------------------------------------------------------D---------GNPEIYVMDLASRQL  279 (430)
T ss_pred             -------------------------------------------------------C---------CCceEEEEECCCCCe
Confidence                                                                   0         112478888887764


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEec-CCC--EEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAF-TAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                      . .+..+........|+|||+.|+..+. +|.  |+++++..++   ..   .+ ...+  .......|+|+|++|+..+
T Consensus       280 ~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~---~l-t~~~--~~~~~~~~Spdg~~i~~~~  349 (430)
T PRK00178        280 S-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AE---RV-TFVG--NYNARPRLSADGKTLVMVH  349 (430)
T ss_pred             E-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EE---Ee-ecCC--CCccceEECCCCCEEEEEE
Confidence            3 34444445567899999998877664 444  5555553332   11   11 1111  2234578999999988776


Q ss_pred             CC-C--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CEEEEEEcCCccchhh
Q 013578          319 KD-G--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--STLQWLSVETGKVLDT  391 (440)
Q Consensus       319 ~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~i~i~d~~~~~~~~~  391 (440)
                      .+ +  .|.+||+.++...        .+.    . ...   .....|+|||+.++...  +  ..|++++... .....
T Consensus       350 ~~~~~~~l~~~dl~tg~~~--------~lt----~-~~~---~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~  412 (430)
T PRK00178        350 RQDGNFHVAAQDLQRGSVR--------ILT----D-TSL---DESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLP  412 (430)
T ss_pred             ccCCceEEEEEECCCCCEE--------Ecc----C-CCC---CCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEE
Confidence            43 3  4778888764321        110    0 011   11468999999888643  2  4577777754 33333


Q ss_pred             hhccccCCeEEEEecCC
Q 013578          392 AEKAHEGEITCMAWAPK  408 (440)
Q Consensus       392 ~~~~h~~~v~~v~~~~~  408 (440)
                      +. .+.+.+...+|+|-
T Consensus       413 l~-~~~g~~~~p~ws~~  428 (430)
T PRK00178        413 LP-TAQGEVREPSWSPY  428 (430)
T ss_pred             Cc-CCCCCcCCCccCCC
Confidence            42 45567788888874

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=5.1e-12  Score=114.85  Aligned_cols=222  Identities=17%  Similarity=0.252  Sum_probs=128.5

Q ss_pred             ccCcceeEEEEccCCCEEEEeeC-CC--cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           89 GHGDSVTGLCFSSDGKCLATACA-DG--VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~-dg--~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      .+...+.+.+|+|||+.|+..+. ++  .|.+||+.+++..   .+.   ...+.....+|+|||+.|+.....      
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---~lt---~~~g~~~~~~wSPDG~~La~~~~~------  282 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---KVT---SFPGINGAPRFSPDGKKLALVLSK------  282 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---Eec---CCCCCcCCeeECCCCCEEEEEEeC------
Confidence            34456778999999998887654 33  4777787765421   111   112334567888888876644221      


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV  245 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  245 (440)
                                                                         ++         ...|+++|+.+++.. .+
T Consensus       283 ---------------------------------------------------~g---------~~~Iy~~dl~tg~~~-~l  301 (448)
T PRK04792        283 ---------------------------------------------------DG---------QPEIYVVDIATKALT-RI  301 (448)
T ss_pred             ---------------------------------------------------CC---------CeEEEEEECCCCCeE-EC
Confidence                                                               00         123777888776543 33


Q ss_pred             eCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC-CCc-
Q 013578          246 DTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK-DGT-  322 (440)
Q Consensus       246 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-dg~-  322 (440)
                      ..+.......+|+|||+.|+..+. ++...+|.++... +.      ...+..........+|+|||++|+..+. ++. 
T Consensus       302 t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~------~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~  374 (448)
T PRK04792        302 TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK------VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKF  374 (448)
T ss_pred             ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC------EEEEecCCCCCcCeeECCCCCEEEEEEecCCce
Confidence            334445567899999998877654 4555555443221 11      1111111222345789999998876654 443 


Q ss_pred             -EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CEEEEEEcCCccchhhhhcccc
Q 013578          323 -LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--STLQWLSVETGKVLDTAEKAHE  397 (440)
Q Consensus       323 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~i~i~d~~~~~~~~~~~~~h~  397 (440)
                       |.++|+.++...        .+.    . ...   ....+|+|||+.|+...  +  ..+++++. +|+....+ ..+.
T Consensus       375 ~I~~~dl~~g~~~--------~lt----~-~~~---d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l-~~~~  436 (448)
T PRK04792        375 NIARQDLETGAMQ--------VLT----S-TRL---DESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL-PAGQ  436 (448)
T ss_pred             EEEEEECCCCCeE--------Ecc----C-CCC---CCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC-cCCC
Confidence             445666544211        110    0 000   11357999999887643  3  34777786 55555555 3456


Q ss_pred             CCeEEEEecCC
Q 013578          398 GEITCMAWAPK  408 (440)
Q Consensus       398 ~~v~~v~~~~~  408 (440)
                      +.+...+|+|-
T Consensus       437 g~~~~p~Wsp~  447 (448)
T PRK04792        437 GEVKSPAWSPF  447 (448)
T ss_pred             CCcCCCccCCC
Confidence            67888889873

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.3e-11  Score=111.27  Aligned_cols=230  Identities=17%  Similarity=0.168  Sum_probs=134.1

Q ss_pred             ccccCcceeEEEEccCCCEE---EEeeCCCc--EEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           87 LKGHGDSVTGLCFSSDGKCL---ATACADGV--IRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        87 l~~H~~~V~~l~~s~dg~~l---~t~s~dg~--v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      |..+...+..-+|||||+.+   ++...+|.  |.+.++.+++..  ++..    ..+.....+|+|||+.|+.......
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~--~lt~----~~g~~~~p~wSPDG~~Laf~s~~~g  253 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK--KILA----LQGNQLMPTFSPRKKLLAFISDRYG  253 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce--Eeec----CCCCccceEECCCCCEEEEEECCCC
Confidence            44445566778999999752   24444554  555566655432  1111    2244556789999998876653200


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC---
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT---  238 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~---  238 (440)
                                                                                      ..+-.+..|++..   
T Consensus       254 ----------------------------------------------------------------~~di~~~~~~~~~g~~  269 (428)
T PRK01029        254 ----------------------------------------------------------------NPDLFIQSFSLETGAI  269 (428)
T ss_pred             ----------------------------------------------------------------CcceeEEEeecccCCC
Confidence                                                                            0011233345443   


Q ss_pred             CceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578          239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       239 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  317 (440)
                      ++...............+|+|||+.|+..+ .+|...+|.+.....+.     ....+..+...+....|+|||++|+..
T Consensus       270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-----~~~~lt~~~~~~~~p~wSPDG~~Laf~  344 (428)
T PRK01029        270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-----SPRLLTKKYRNSSCPAWSPDGKKIAFC  344 (428)
T ss_pred             CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc-----ceEEeccCCCCccceeECCCCCEEEEE
Confidence            222222222223345679999999888766 46766677654321110     122333344567788999999988876


Q ss_pred             eCC---CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-c---CCEEEEEEcCCccchh
Q 013578          318 SKD---GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-H---GSTLQWLSVETGKVLD  390 (440)
Q Consensus       318 ~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~---~~~i~i~d~~~~~~~~  390 (440)
                      +.+   ..|.+||+.++....        +    ...   ...+....|+|||+.|+.. .   ...|+++|+.+++...
T Consensus       345 ~~~~g~~~I~v~dl~~g~~~~--------L----t~~---~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~  409 (428)
T PRK01029        345 SVIKGVRQICVYDLATGRDYQ--------L----TTS---PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK  409 (428)
T ss_pred             EcCCCCcEEEEEECCCCCeEE--------c----cCC---CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            543   368999998654311        0    000   1124568999999988753 2   3678999998877544


Q ss_pred             hhhccccCCeEEEEecCC
Q 013578          391 TAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~~~~  408 (440)
                      ..  ...+.+...+|+|-
T Consensus       410 Lt--~~~g~~~~p~Ws~~  425 (428)
T PRK01029        410 IV--IGSGEKRFPSWGAF  425 (428)
T ss_pred             ee--cCCCcccCceecCC
Confidence            33  24456778888875

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.49  E-value=4e-12  Score=119.50  Aligned_cols=207  Identities=13%  Similarity=0.115  Sum_probs=143.3

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCC-------ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTG-------KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK  287 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  287 (440)
                      +++...++++|+.||+|++||.+.-       +...++......+.++...+.++.+|+++.||.|++.+++...... .
T Consensus      1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~-~ 1135 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSK-R 1135 (1431)
T ss_pred             cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccc-c
Confidence            3444239999999999999998642       2233444456788899999999999999999999999987532111 1


Q ss_pred             eeeeeeeeecc-ccceEEE-EEcC-CCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          288 AVTSVMQLKGH-KSAVTWL-CFAP-NSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       288 ~~~~~~~~~~h-~~~v~~~-~~~p-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                      ..........+ .+.+.++ +|.. .+. .|+.+...+.|..||++........            ........|++++.
T Consensus      1136 ~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------------k~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1136 VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL------------KNQLRHGLVTSIVI 1203 (1431)
T ss_pred             eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh------------hcCccccceeEEEe
Confidence            11122222222 2333333 3332 223 6777888899999999965443221            11122345899999


Q ss_pred             CCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee--CCCeEEEEeCCCCCC
Q 013578          364 SSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS--VDKKVKLWLAPSLES  439 (440)
Q Consensus       364 s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~--~Dg~i~vw~~~~~~~  439 (440)
                      +|.+.+++.|. .|.+.+||++-+.++.....++..+++.+..+|-.     .++...++++  ..+.|.+|++.++.+
T Consensus      1204 dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~-----~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY-----PQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC-----CCCceEEEecccCCCceeeeecccCcc
Confidence            99999999986 79999999999998888877778899999988875     3224444444  478899999998854

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.48  E-value=1.2e-09  Score=90.13  Aligned_cols=297  Identities=17%  Similarity=0.220  Sum_probs=175.1

Q ss_pred             cccccCcceeEEEEccCCCEEEEeeC---CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           86 TLKGHGDSVTGLCFSSDGKCLATACA---DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        86 ~l~~H~~~V~~l~~s~dg~~l~t~s~---dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      .+-.+.+.++-|+|+|++++|.++-.   +|.|..|.++...... ..+......+.+.+.+++++++++++++....  
T Consensus        34 ~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~--  110 (346)
T COG2706          34 QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS--  110 (346)
T ss_pred             hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeeccccCCCCCeEEEECCCCCEEEEEEccC--
Confidence            34567889999999999999999854   5789899888643321 23333334445669999999999999998774  


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ..+.++.....-......+.....+..       .|   .-....-+....+.|+++.+++..-.--.|.+|++..|...
T Consensus       111 g~v~v~p~~~dG~l~~~v~~~~h~g~~-------p~---~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~  180 (346)
T COG2706         111 GSVSVYPLQADGSLQPVVQVVKHTGSG-------PH---ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT  180 (346)
T ss_pred             ceEEEEEcccCCccccceeeeecCCCC-------CC---ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccc
Confidence            444444432211111110000000000       00   00001112233447899844444333334999999977653


Q ss_pred             eeee---CCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeec---cccceEEEEEcCCCCEEE
Q 013578          243 GNVD---TNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKG---HKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       243 ~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~  315 (440)
                      ..-.   ......+.+.|+|++++.++..+ +++|.+|..... .+.....+.+..+..   ...+...|..+|||++|+
T Consensus       181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY  259 (346)
T COG2706         181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY  259 (346)
T ss_pred             cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence            2211   23455688999999999888775 899999998764 233333333333322   234567899999999998


Q ss_pred             EEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEc--CCccchh
Q 013578          316 TASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSV--ETGKVLD  390 (440)
Q Consensus       316 s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~--~~~~~~~  390 (440)
                      ++.+ ...|.+|.+.....      ......  .....+  ..-....++++|++|+++.  +..|.+|..  ++|++-.
T Consensus       260 asNRg~dsI~~f~V~~~~g------~L~~~~--~~~teg--~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         260 ASNRGHDSIAVFSVDPDGG------KLELVG--ITPTEG--QFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             EecCCCCeEEEEEEcCCCC------EEEEEE--EeccCC--cCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence            8763 34788887763211      111111  011111  1134688999999999875  456877755  5666544


Q ss_pred             hhhccccCCeEEEEec
Q 013578          391 TAEKAHEGEITCMAWA  406 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~~  406 (440)
                      ...........||.|.
T Consensus       330 ~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         330 LGRYAVVPEPVCVKFL  345 (346)
T ss_pred             cccccCCCCcEEEEEc
Confidence            3323455566777764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.48  E-value=1.8e-10  Score=101.40  Aligned_cols=288  Identities=15%  Similarity=0.258  Sum_probs=162.3

Q ss_pred             CcceeEEEEccCCCEEEEeeC----CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           91 GDSVTGLCFSSDGKCLATACA----DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~----dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      ......|+++|++++|.+...    +|.|..|++....... ..+......+.....++++|++++++++.....  .+.
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L-~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g--~v~  112 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL-TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGG--SVS  112 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-EEEEEEEESSSCEEEEEECTTSSEEEEEETTTT--EEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-EEeeeeccCCCCcEEEEEecCCCEEEEEEccCC--eEE
Confidence            445677899999999998876    5799999988753221 122222224466788999999999999986633  344


Q ss_pred             eeccccc--ccccc--ccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--
Q 013578          167 MYGEEKA--ISTNE--GKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--  240 (440)
Q Consensus       167 ~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--  240 (440)
                      +++....  .....  ......-+.+      ...       ....+..+.++|+++.++++.-....|++|++....  
T Consensus       113 v~~l~~~g~l~~~~~~~~~~g~g~~~------~rq-------~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~  179 (345)
T PF10282_consen  113 VFPLDDDGSLGEVVQTVRHEGSGPNP------DRQ-------EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK  179 (345)
T ss_dssp             EEEECTTSEEEEEEEEEESEEEESST------TTT-------SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T
T ss_pred             EEEccCCcccceeeeecccCCCCCcc------ccc-------ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce
Confidence            4333221  10000  0000000000      000       001122345589999666665555679999987654  


Q ss_pred             ee--eeee-CCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeec-c--ccceEEEEEcCCCCE
Q 013578          241 LL--GNVD-TNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKG-H--KSAVTWLCFAPNSEQ  313 (440)
Q Consensus       241 ~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h--~~~v~~~~~~p~~~~  313 (440)
                      ..  ..+. ......+.++|+|+++++++..+ ++.|.+|++.... +.......+..+.. .  ......|+++|||++
T Consensus       180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~  258 (345)
T PF10282_consen  180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGFTGENAPAEIAISPDGRF  258 (345)
T ss_dssp             EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred             EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence            32  2222 23345688999999999887765 6779999987322 22222222222211 1  125788999999999


Q ss_pred             EEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEc--CCccc
Q 013578          314 IITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSV--ETGKV  388 (440)
Q Consensus       314 l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~--~~~~~  388 (440)
                      |+++. .++.|.+|++....      .......  .....+  ..-..++++|+|++|+++.  ++.|.+|++  ++|.+
T Consensus       259 lyvsnr~~~sI~vf~~d~~~------g~l~~~~--~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l  328 (345)
T PF10282_consen  259 LYVSNRGSNSISVFDLDPAT------GTLTLVQ--TVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL  328 (345)
T ss_dssp             EEEEECTTTEEEEEEECTTT------TTEEEEE--EEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             EEEEeccCCEEEEEEEecCC------CceEEEE--EEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence            87665 56789999994221      0111111  000111  1145799999999999875  678998866  56665


Q ss_pred             hhhhhccccCCeEEEEe
Q 013578          389 LDTAEKAHEGEITCMAW  405 (440)
Q Consensus       389 ~~~~~~~h~~~v~~v~~  405 (440)
                      ...-....-....||.|
T Consensus       329 ~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  329 TPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEEEESSSEEEEEE
T ss_pred             EEecccccCCCCEEEeC
Confidence            44332123445667665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.47  E-value=3.4e-10  Score=93.28  Aligned_cols=285  Identities=17%  Similarity=0.174  Sum_probs=169.4

Q ss_pred             CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe--eccccccccccccccCCCCCCc
Q 013578          112 DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM--YGEEKAISTNEGKQQSKLPGPE  189 (440)
Q Consensus       112 dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  189 (440)
                      +.-|.+|++++.......  .......+.++-++|+|+.+.|.++..++....+..  ++........-...        
T Consensus        15 s~gI~v~~ld~~~g~l~~--~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~--------   84 (346)
T COG2706          15 SQGIYVFNLDTKTGELSL--LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ--------   84 (346)
T ss_pred             CCceEEEEEeCcccccch--hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc--------
Confidence            456999999865443211  122234477899999999999999988744443333  33221111110000        


Q ss_pred             eeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cceee--eeeCCCCc----------ccEEE
Q 013578          190 IKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GKLLG--NVDTNQLK----------NNMAA  256 (440)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~--~~~~~~~~----------v~~~~  256 (440)
                                   ......+.-+..+++|+.++.+.-..|.|.++-++. |....  ....|...          +.+..
T Consensus        85 -------------~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~  151 (346)
T COG2706          85 -------------TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN  151 (346)
T ss_pred             -------------ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence                         000111123344778884455555678899998865 33221  11122222          67889


Q ss_pred             ecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccc
Q 013578          257 ISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHL  334 (440)
Q Consensus       257 ~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~  334 (440)
                      +.|++++|++.+- --+|.+|++..+.-   .. .....++ ....-..|.|+|++++.+..+ -+++|-+|..+.....
T Consensus       152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L---~~-~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~  226 (346)
T COG2706         152 FTPDGRYLVVPDLGTDRIFLYDLDDGKL---TP-ADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK  226 (346)
T ss_pred             eCCCCCEEEEeecCCceEEEEEcccCcc---cc-ccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence            9999999998863 34699999975441   11 1222232 345568999999999887666 5899999999864111


Q ss_pred             cCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCC--ccchh-hhhccccCCeEEEEecCCC
Q 013578          335 DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVET--GKVLD-TAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~--~~~~~-~~~~~h~~~v~~v~~~~~~  409 (440)
                      -........++..    .........+..++||++|.++.  ...|.+|.+..  +++.. ....-+........|++.+
T Consensus       227 ~~~lQ~i~tlP~d----F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g  302 (346)
T COG2706         227 FEELQTIDTLPED----FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG  302 (346)
T ss_pred             EEEeeeeccCccc----cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC
Confidence            1111111111111    12233456799999999999986  35788877644  33211 1112344457889999998


Q ss_pred             CCCCCCcceEEEEeeCC-CeEEEEeCCC
Q 013578          410 IPMGNQQVSVLATSSVD-KKVKLWLAPS  436 (440)
Q Consensus       410 ~~~~~~~~~~l~t~~~D-g~i~vw~~~~  436 (440)
                              ++|+.+..| ..|.+|..+.
T Consensus       303 --------~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         303 --------RFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             --------CEEEEEccCCCcEEEEEEcC
Confidence                    788887774 5688887754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=3.6e-12  Score=110.39  Aligned_cols=210  Identities=11%  Similarity=0.120  Sum_probs=141.0

Q ss_pred             cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcc---------------------------------------
Q 013578          212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN---------------------------------------  252 (440)
Q Consensus       212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v---------------------------------------  252 (440)
                      +-.++||++++++|...-.|++||+.+-.....-......|                                       
T Consensus        57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~G  136 (703)
T KOG2321|consen   57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFG  136 (703)
T ss_pred             eEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCC
Confidence            34589999999999999999999987543211110000001                                       


Q ss_pred             cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccc
Q 013578          253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY  332 (440)
Q Consensus       253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~  332 (440)
                      ..++++.-.--|++++....|+-+++..+.        .+..+....+.++++..++...+|++|+.||.|..||.+...
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGr--------fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGR--------FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEccccc--------cccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence            112222211124444445566666665554        566666667899999999999999999999999999999765


Q ss_pred             cccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCC
Q 013578          333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP  411 (440)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  411 (440)
                      .........   .+..+........|+++.|+.+|-.+++|. .|.+.|||+++.+++..-..+..-+|..+.|.+.+  
T Consensus       209 rv~~l~~~~---~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~--  283 (703)
T KOG2321|consen  209 RVGTLDAAS---SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD--  283 (703)
T ss_pred             hheeeeccc---ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC--
Confidence            432211111   111122223345689999999999999986 89999999999998776543445589999998763  


Q ss_pred             CCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          412 MGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       412 ~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                         . ...|+|.. ...++|||-.++++
T Consensus       284 ---~-q~~v~S~D-k~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  284 ---Q-QNKVVSMD-KRILKIWDECTGKP  306 (703)
T ss_pred             ---C-CceEEecc-hHHhhhcccccCCc
Confidence               1 14566654 67899999988764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.47  E-value=2.8e-12  Score=118.58  Aligned_cols=184  Identities=19%  Similarity=0.297  Sum_probs=142.6

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCc----ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLK----NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      .++..+.+..+.+||...+.....+......    ..-+.++++.-++++|+.-+.|.+|+....+        ....+.
T Consensus       101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn--------~p~~l~  172 (967)
T KOG0974|consen  101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN--------KPIRLK  172 (967)
T ss_pred             eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC--------Ccceec
Confidence            5677777778999999877766665443211    1123456777789999999999999987332        222688


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCC
Q 013578          297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS  376 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  376 (440)
                      +|.+.|.++.|+-||+++++.|.|.++|+|++++...+.             ....+|...+.++.|.|+ +++.++.|-
T Consensus       173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------~~~fgHsaRvw~~~~~~n-~i~t~gedc  238 (967)
T KOG0974|consen  173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------CTGFGHSARVWACCFLPN-RIITVGEDC  238 (967)
T ss_pred             ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------------cccccccceeEEEEeccc-eeEEeccce
Confidence            999999999999999999999999999999999765432             234578889999999999 444446689


Q ss_pred             EEEEEEcCCccchhhhhcccc-CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          377 TLQWLSVETGKVLDTAEKAHE-GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +.++|+.. ++.+..+. .|. ..|+.++..++.        ..++|++.||.+++|++..
T Consensus       239 tcrvW~~~-~~~l~~y~-~h~g~~iw~~~~~~~~--------~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  239 TCRVWGVN-GTQLEVYD-EHSGKGIWKIAVPIGV--------IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEEEecc-cceehhhh-hhhhcceeEEEEcCCc--------eEEEeeccCcchhhhhhhc
Confidence            99999654 44444663 554 589999999987        7999999999999999865

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=4.9e-10  Score=97.24  Aligned_cols=301  Identities=12%  Similarity=0.173  Sum_probs=171.2

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee-------cCCcc
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH-------NLSGC  163 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-------~~~~~  163 (440)
                      ..+++..++|++|+++|.+. +..++|++......    .+...  . ..+.++.|+|-+.+|.+--.       .....
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~----~lt~~--~-~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p  105 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKV----VLCVE--L-KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNP  105 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcE----EEEec--c-ceeeeeeecccccccccccccccccCCCCCCC
Confidence            33478889999998888765 55799999877641    12111  1 27899999999998876421       12234


Q ss_pred             eEEeeccccccccccccccCCC----------------CC-CceeecccccccceeEEEeecccccccCCCCCe-EEEE-
Q 013578          164 SLYMYGEEKAISTNEGKQQSKL----------------PG-PEIKWEHHKVHDKRAILTLFGASATYGTADGST-IIAS-  224 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s-  224 (440)
                      .+.+|+.+.............-                .. ....++.........-...........+|.+.. .+++ 
T Consensus       106 n~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvy  185 (566)
T KOG2315|consen  106 NVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVY  185 (566)
T ss_pred             ceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEE
Confidence            5666666653222211111000                00 011111111111101111111122223333221 2222 


Q ss_pred             ----eeCCceEEEEeCCCCceeeee---eCCCCcccEEEecCCCCeEE-EEe--cC---------CCEEEEEeEecCCCc
Q 013578          225 ----CSEGTDISIWHGKTGKLLGNV---DTNQLKNNMAAISPNGRFLA-AAA--FT---------ADVKVWEIVYSKDGL  285 (440)
Q Consensus       225 ----~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~-~~~--~d---------g~i~i~d~~~~~~~~  285 (440)
                          .+.-..|++|.......-..+   ......-..+.|++.|.-|+ .++  -|         .+++++++....   
T Consensus       186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s---  262 (566)
T KOG2315|consen  186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES---  262 (566)
T ss_pred             ccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce---
Confidence                345566888876522211111   11122223467888776433 222  23         347777765111   


Q ss_pred             eeeeeeeeeeeccccceEEEEEcCCCCEEEEE--eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          286 VKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA--SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       286 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                           ....+. ..++|.++.|+|+++-++.+  -.-..+.|+|++..-.               +...  ..+-+++-|
T Consensus       263 -----~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v---------------~df~--egpRN~~~f  319 (566)
T KOG2315|consen  263 -----VSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV---------------FDFP--EGPRNTAFF  319 (566)
T ss_pred             -----EEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe---------------EeCC--CCCccceEE
Confidence                 233332 47899999999999877654  3566899999984311               1111  122357999


Q ss_pred             CCCCCEEEEec----CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC------CCeEEEEe
Q 013578          364 SSDGKILAATH----GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV------DKKVKLWL  433 (440)
Q Consensus       364 s~~g~~l~~~~----~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~------Dg~i~vw~  433 (440)
                      +|.|++++.++    .|.+.|||+.+.+++..+.   ...-+-+.|+|||        .+++|+..      |+.++||+
T Consensus       320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a~~tt~~eW~PdG--------e~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---AANTTVFEWSPDG--------EYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             CCCCCEEEEeecCCCCCceEEEeccchhhccccc---cCCceEEEEcCCC--------cEEEEEeccccEEecCCeEEEE
Confidence            99999887643    4899999999988888773   3345678999999        88888875      78899999


Q ss_pred             CCC
Q 013578          434 APS  436 (440)
Q Consensus       434 ~~~  436 (440)
                      ...
T Consensus       389 ytG  391 (566)
T KOG2315|consen  389 YTG  391 (566)
T ss_pred             ecC
Confidence            864

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.45  E-value=2.1e-11  Score=106.19  Aligned_cols=141  Identities=15%  Similarity=0.176  Sum_probs=117.2

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeee--CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      +++-|...|.|.+|+...++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+.....        ....+++.
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~--------~~~~~~~~  143 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV--------IIRIWKEQ  143 (541)
T ss_pred             EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce--------eeeeeccC
Confidence            78899999999999999999887775  578889999999999999999999999999986654        67777888


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-----CCEEEEe
Q 013578          299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-----GKILAAT  373 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~  373 (440)
                      ...+.+++.+|||..+++++.  +|++||+++.+.+              ....+|...|++++|-.+     |.++.++
T Consensus       144 ~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv--------------~~ftgh~s~v~t~~f~~~~~g~~G~~vLss  207 (541)
T KOG4547|consen  144 KPLVSSLCISPDGKILLTASR--QIKVLDIETKEVV--------------ITFTGHGSPVRTLSFTTLIDGIIGKYVLSS  207 (541)
T ss_pred             CCccceEEEcCCCCEEEeccc--eEEEEEccCceEE--------------EEecCCCcceEEEEEEEeccccccceeeec
Confidence            888999999999999999875  8999999987543              334578888999999877     7777775


Q ss_pred             c--CCEEEEEEcCC
Q 013578          374 H--GSTLQWLSVET  385 (440)
Q Consensus       374 ~--~~~i~i~d~~~  385 (440)
                      .  +..+.+|-+..
T Consensus       208 a~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  208 AAAERGITVWVVEK  221 (541)
T ss_pred             cccccceeEEEEEc
Confidence            4  45666665543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.43  E-value=7.5e-11  Score=107.70  Aligned_cols=171  Identities=18%  Similarity=0.157  Sum_probs=105.0

Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEE-ecCC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAA-AFTA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL  305 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~  305 (440)
                      ..|++||+.+++.... ......+.+++|+|||+.|+.. +.++  .|++||+..+.         ...+..+.......
T Consensus       214 ~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~  283 (417)
T TIGR02800       214 PEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---------LTRLTNGPGIDTEP  283 (417)
T ss_pred             cEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---------EEECCCCCCCCCCE
Confidence            4688999988765432 2334456678999999977654 4444  47777765432         22333344445677


Q ss_pred             EEcCCCCEEEEEeC-CC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC---EE
Q 013578          306 CFAPNSEQIITASK-DG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS---TL  378 (440)
Q Consensus       306 ~~~p~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~---~i  378 (440)
                      .|+|+|++|+..+. ++  .|.++|+.++...        .+    .   .+........|+|+|++++.+. ++   .|
T Consensus       284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~--------~l----~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i  348 (417)
T TIGR02800       284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR--------RL----T---FRGGYNASPSWSPDGDLIAFVHREGGGFNI  348 (417)
T ss_pred             EECCCCCEEEEEECCCCCceEEEEECCCCCEE--------Ee----e---cCCCCccCeEECCCCCEEEEEEccCCceEE
Confidence            89999998876654 33  4777776643211        00    0   0112245689999999888765 33   78


Q ss_pred             EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC---eEEEEeCC
Q 013578          379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK---KVKLWLAP  435 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg---~i~vw~~~  435 (440)
                      .+||+.++......   .........|+|++        ++|+..+.++   .+.+.+..
T Consensus       349 ~~~d~~~~~~~~l~---~~~~~~~p~~spdg--------~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       349 AVMDLDGGGERVLT---DTGLDESPSFAPNG--------RMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EEEeCCCCCeEEcc---CCCCCCCceECCCC--------CEEEEEEeCCCcEEEEEEECC
Confidence            99999886543222   12234566899998        6777666654   34454443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.42  E-value=3.6e-11  Score=95.71  Aligned_cols=191  Identities=22%  Similarity=0.231  Sum_probs=128.7

Q ss_pred             EEEEeeCCceEEEEeCCCCce--eeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeee-eee
Q 013578          221 IIASCSEGTDISIWHGKTGKL--LGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM-QLK  296 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~  296 (440)
                      .++++..+|.+.+-+......  ++.++.|+.+.....|+. +.+.+++|+.|+.+..||++..+.       .+. ..+
T Consensus       135 ~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-------~i~~n~k  207 (339)
T KOG0280|consen  135 KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-------FIWHNSK  207 (339)
T ss_pred             eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-------eeeecce
Confidence            455555666666544443332  346778888888888876 457899999999999999984431       222 255


Q ss_pred             ccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC--CCEEEEe
Q 013578          297 GHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD--GKILAAT  373 (440)
Q Consensus       297 ~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~  373 (440)
                      -|...|.+|.-+| .+.++++|+.|..|++||.++....             +... .....|.++.++|.  +++|+++
T Consensus       208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP-------------l~~~-~v~GGVWRi~~~p~~~~~lL~~C  273 (339)
T KOG0280|consen  208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP-------------LFKA-KVGGGVWRIKHHPEIFHRLLAAC  273 (339)
T ss_pred             eeecceEEEecCCCCCceEEEeccccceeeeehhcccCc-------------cccC-ccccceEEEEecchhhhHHHHHH
Confidence            6889999998887 5678999999999999999954321             1111 11245888888886  4456665


Q ss_pred             cCCEEEEEEcCCccc----hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC-CCeEE-EEeCCCCCCC
Q 013578          374 HGSTLQWLSVETGKV----LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV-DKKVK-LWLAPSLESS  440 (440)
Q Consensus       374 ~~~~i~i~d~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~-vw~~~~~~~~  440 (440)
                      --+..+|.+...+..    .....+.|.+-+..-.|....        ..|+||+- |+.++ +|-.-+++++
T Consensus       274 Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~--------~~lATCsFYDk~~~~~Wl~~t~~~t  338 (339)
T KOG0280|consen  274 MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKD--------SFLATCSFYDKKIRQLWLHITGEPT  338 (339)
T ss_pred             HhcCceEEEecccccchheeeeccccccceeecccccccc--------ceeeeeeccccceeeeeeeccCCcC
Confidence            555555665544322    222335788888888885543        57888764 88866 9987777664

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=3.2e-10  Score=102.33  Aligned_cols=182  Identities=16%  Similarity=0.151  Sum_probs=106.0

Q ss_pred             eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-CC--CEEE--EEeEecCCCceeeeeeeeeeeccccceEE
Q 013578          230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TA--DVKV--WEIVYSKDGLVKAVTSVMQLKGHKSAVTW  304 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~i--~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (440)
                      .|.+.++..++..... .........+|+|||+.|+..+. +|  .+++  |++..+..+.     .......+.+....
T Consensus       212 ~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~-----~~~lt~~~~~~~~~  285 (428)
T PRK01029        212 KIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGK-----PRRLLNEAFGTQGN  285 (428)
T ss_pred             eEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCc-----ceEeecCCCCCcCC
Confidence            4777788766543322 22334456899999998887653 33  3333  5554321111     11112222234467


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec----CCEEE
Q 013578          305 LCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH----GSTLQ  379 (440)
Q Consensus       305 ~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~i~  379 (440)
                      .+|+|||+.|+..+ .+|...+|.+....    .......+     .  .....+....|||||+.|+...    ...|+
T Consensus       286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~----~g~~~~~l-----t--~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~  354 (428)
T PRK01029        286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDP----EGQSPRLL-----T--KKYRNSSCPAWSPDGKKIAFCSVIKGVRQIC  354 (428)
T ss_pred             eEECCCCCEEEEEECCCCCceEEEEECcc----cccceEEe-----c--cCCCCccceeECCCCCEEEEEEcCCCCcEEE
Confidence            89999999877665 56766666543110    00000101     0  1112345789999999888643    24799


Q ss_pred             EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEe-eC--CCeEEEEeCCCCC
Q 013578          380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATS-SV--DKKVKLWLAPSLE  438 (440)
Q Consensus       380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~-~~--Dg~i~vw~~~~~~  438 (440)
                      +||+.+++.....  .....+....|+||+        +.|+.. ..  ...|.+|++..++
T Consensus       355 v~dl~~g~~~~Lt--~~~~~~~~p~wSpDG--------~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        355 VYDLATGRDYQLT--TSPENKESPSWAIDS--------LHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             EEECCCCCeEEcc--CCCCCccceEECCCC--------CEEEEEECCCCCceEEEEECCCCC
Confidence            9999988765433  233467789999998        666543 32  3568888887764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=8e-12  Score=102.17  Aligned_cols=168  Identities=17%  Similarity=0.312  Sum_probs=124.8

Q ss_pred             CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-ccccceEEEEEcCCC-CEEEEEeCCCcEEEE
Q 013578          249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-GHKSAVTWLCFAPNS-EQIITASKDGTLRVW  326 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iw  326 (440)
                      +..+..++|++.-.-++++..|-.|++||-...         ....++ ..+..|+|++|-|.+ ..|+.|+. +-|.+|
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst---------~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW  167 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST---------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIW  167 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCC---------CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEE
Confidence            345677899998788899999999999996442         222232 234679999999955 45777776 468999


Q ss_pred             ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhccccCCeEEEE
Q 013578          327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMA  404 (440)
Q Consensus       327 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~  404 (440)
                      ............+........+....+| ..|+.+.|.+||..+++++  +..|.|||..++..+.-.. ...+.+.-+.
T Consensus       168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLk  245 (445)
T KOG2139|consen  168 SDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLK  245 (445)
T ss_pred             EcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEE
Confidence            8765443322222223333345555666 6699999999999999876  7899999999998776552 4567799999


Q ss_pred             ecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          405 WAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       405 ~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      |+||+        .+|+.+.-|+..++|+..+
T Consensus       246 wSPdg--------d~lfaAt~davfrlw~e~q  269 (445)
T KOG2139|consen  246 WSPDG--------DVLFAATCDAVFRLWQENQ  269 (445)
T ss_pred             EcCCC--------CEEEEecccceeeeehhcc
Confidence            99999        8999999999999996554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.38  E-value=4.9e-11  Score=103.95  Aligned_cols=190  Identities=15%  Similarity=0.187  Sum_probs=141.4

Q ss_pred             eEEEEeeCCceEEEEeCCCCceeeeeeCC---CCcccEEEec--------------------CCCCeEEEEecCCCEEEE
Q 013578          220 TIIASCSEGTDISIWHGKTGKLLGNVDTN---QLKNNMAAIS--------------------PNGRFLAAAAFTADVKVW  276 (440)
Q Consensus       220 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~s--------------------~~~~~l~~~~~dg~i~i~  276 (440)
                      .+++....||.+++|+...++....+...   .+..++..|.                    -+...++-|...|.|.+|
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y   85 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY   85 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence            38899999999999999988776666431   2223333331                    234578888899999999


Q ss_pred             EeEecCCCceeeeeeeeee--eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCC
Q 013578          277 EIVYSKDGLVKAVTSVMQL--KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA  354 (440)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (440)
                      ++..++        ....+  ..|.+.|.++.++.+-..|.+++.|+.+..|+.........              ....
T Consensus        86 s~~~g~--------it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~--------------~~~~  143 (541)
T KOG4547|consen   86 SVAGGE--------ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI--------------WKEQ  143 (541)
T ss_pred             EecCCe--------EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee--------------eccC
Confidence            987665        23333  46999999999999989999999999999999986543211              1122


Q ss_pred             eeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcc-eEEEEeeCCCeEEEEe
Q 013578          355 TLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQV-SVLATSSVDKKVKLWL  433 (440)
Q Consensus       355 ~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~-~~l~t~~~Dg~i~vw~  433 (440)
                      ...+.+++.+|||..++++ .+.|.+||+++++.+..+ .+|.++|.++.|..+   +++..+ .+|.+...+.-+.+|-
T Consensus       144 ~~~~~sl~is~D~~~l~~a-s~~ik~~~~~~kevv~~f-tgh~s~v~t~~f~~~---~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  144 KPLVSSLCISPDGKILLTA-SRQIKVLDIETKEVVITF-TGHGSPVRTLSFTTL---IDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             CCccceEEEcCCCCEEEec-cceEEEEEccCceEEEEe-cCCCcceEEEEEEEe---ccccccceeeeccccccceeEEE
Confidence            3346789999999988876 478999999999999999 599999999999877   111111 4555666677788887


Q ss_pred             CCC
Q 013578          434 APS  436 (440)
Q Consensus       434 ~~~  436 (440)
                      +..
T Consensus       219 v~~  221 (541)
T KOG4547|consen  219 VEK  221 (541)
T ss_pred             EEc
Confidence            654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=4e-10  Score=103.01  Aligned_cols=172  Identities=19%  Similarity=0.153  Sum_probs=103.5

Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEE-EecCC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAA-AAFTA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL  305 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~  305 (440)
                      ..|.+||+.+++... +...........|+|||+.|+. .+.+|  .|++||+..+.         ...+..+.......
T Consensus       223 ~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---------~~~lt~~~~~~~~~  292 (430)
T PRK00178        223 PRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---------LSRVTNHPAIDTEP  292 (430)
T ss_pred             CEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---------eEEcccCCCCcCCe
Confidence            358888988776533 2222334557899999998875 44455  47777775443         22344455556778


Q ss_pred             EEcCCCCEEEEEeC-CC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CEE
Q 013578          306 CFAPNSEQIITASK-DG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--STL  378 (440)
Q Consensus       306 ~~~p~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~i  378 (440)
                      .|+|||+.|+..+. ++  .|.++|+.++...        .+.     ..+  .......|+|||++|+...  +  ..|
T Consensus       293 ~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~--------~lt-----~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l  357 (430)
T PRK00178        293 FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE--------RVT-----FVG--NYNARPRLSADGKTLVMVHRQDGNFHV  357 (430)
T ss_pred             EECCCCCEEEEEECCCCCceEEEEECCCCCEE--------Eee-----cCC--CCccceEECCCCCEEEEEEccCCceEE
Confidence            99999998776553 34  4666676654321        000     001  1123478999999988754  2  268


Q ss_pred             EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC-CC--eEEEEeCCC
Q 013578          379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV-DK--KVKLWLAPS  436 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg--~i~vw~~~~  436 (440)
                      .++|+.+++.....   +........|+|++        ++|+..+. +|  .+.+++++.
T Consensus       358 ~~~dl~tg~~~~lt---~~~~~~~p~~spdg--------~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        358 AAQDLQRGSVRILT---DTSLDESPSVAPNG--------TMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             EEEECCCCCEEEcc---CCCCCCCceECCCC--------CEEEEEEecCCceEEEEEECCC
Confidence            89999887653322   12223356899998        66665544 33  456666643

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.37  E-value=7.7e-12  Score=121.87  Aligned_cols=232  Identities=15%  Similarity=0.216  Sum_probs=155.7

Q ss_pred             ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      ++.|-..|.++.-+|...+-+||+.||.|++|....+...  .+.+  ......|+.+.|+.+|..              
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v--~~~r--t~g~s~vtr~~f~~qGnk-------------- 2265 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV--VCFR--TAGNSRVTRSRFNHQGNK-------------- 2265 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE--EEee--ccCcchhhhhhhcccCCc--------------
Confidence            4456778999999998899999999999999998765432  1222  222266777777766553              


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD  246 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  246 (440)
                                                                             +..+..||.+.+|... .++....+
T Consensus      2266 -------------------------------------------------------~~i~d~dg~l~l~q~~-pk~~~s~q 2289 (2439)
T KOG1064|consen 2266 -------------------------------------------------------FGIVDGDGDLSLWQAS-PKPYTSWQ 2289 (2439)
T ss_pred             -------------------------------------------------------eeeeccCCceeecccC-Ccceeccc
Confidence                                                                   3444557778888876 56666777


Q ss_pred             CCCCcccEEEecCCCCeEEEEe---cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578          247 TNQLKNNMAAISPNGRFLAAAA---FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL  323 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i  323 (440)
                      .|......+.|-.  ..+++++   .++.+.+||.......     ..+.  ..|.+.++++++-|....|++|+.+|.|
T Consensus      2290 chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-----s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-----SLVH--TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred             cCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-----ceee--eecCCCceEEEEcCcceEEEecCCcCcE
Confidence            7777777776654  4556554   5788999997543311     1233  7799999999999999999999999999


Q ss_pred             EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEE
Q 013578          324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITC  402 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~  402 (440)
                      ++||++.++.....+                       ++. ...++++|+ .|.++||++..-..+..+...|..  ..
T Consensus      2361 ~l~D~rqrql~h~~~-----------------------~~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak--~g 2414 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQ-----------------------ALD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAK--QG 2414 (2439)
T ss_pred             EEeehHHHHHHHHhh-----------------------hhh-hhheeeccCcccceEEEEccccchhhcCchhhcc--cc
Confidence            999999765432111                       022 344667665 899999999988887776533421  11


Q ss_pred             EEecCCCCCCCCCcceEEEEeeCCCe
Q 013578          403 MAWAPKTIPMGNQQVSVLATSSVDKK  428 (440)
Q Consensus       403 v~~~~~~~~~~~~~~~~l~t~~~Dg~  428 (440)
                      + |-..|.-..-+....|.+|+.||+
T Consensus      2415 f-Fr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2415 F-FRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             h-hhhcCceeeeccCceEEEecCCCC
Confidence            1 222210000111257888888874

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=4.2e-11  Score=101.85  Aligned_cols=268  Identities=12%  Similarity=0.151  Sum_probs=172.3

Q ss_pred             EecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccc
Q 013578          132 RINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASA  211 (440)
Q Consensus       132 ~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (440)
                      .....|.+-|..|.|...|..+++++.+   ..+.+|+-......               .+...+|...++...+.   
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD---~~vv~WdW~~~~~~---------------l~f~SGH~~NvfQaKFi---  194 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDD---LQVVVWDWVSGSPK---------------LSFESGHCNNVFQAKFI---  194 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCcc---ceEEeehhhccCcc---------------cccccccccchhhhhcc---
Confidence            3456788999999999999999998877   44444443332111               11122333322222221   


Q ss_pred             cccCCCCCeEEEEeeCCceEEEEeCCC-Cce--eeeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCcee
Q 013578          212 TYGTADGSTIIASCSEGTDISIWHGKT-GKL--LGNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVK  287 (440)
Q Consensus       212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~  287 (440)
                         ...+..-+++++.||.|++=.+.. +.+  ...+..|.+++..++.-|+. ..|.+++.|+.+.-+|++....... 
T Consensus       195 ---P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~-  270 (559)
T KOG1334|consen  195 ---PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK-  270 (559)
T ss_pred             ---CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce-
Confidence               122333799999999999876543 322  34556788999999998854 6788999999999999987652211 


Q ss_pred             eeeeeeeeecccc---ceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          288 AVTSVMQLKGHKS---AVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       288 ~~~~~~~~~~h~~---~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                          ...-..+..   ....++..|... .+++++.|..+++||.+....-.... .+..+. +.+........|++++|
T Consensus       271 ----~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-~~~~f~-p~hl~~d~~v~ITgl~Y  344 (559)
T KOG1334|consen  271 ----FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-VLDKFC-PHHLVEDDPVNITGLVY  344 (559)
T ss_pred             ----eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc-hhhhcC-CccccccCcccceeEEe
Confidence                112222333   467889999665 78999999999999988543221111 111111 11222245567999999


Q ss_pred             CCCC-CEEEEecCCEEEEEEcCC--c----------cchhhhhccccC--CeEEEEec-CCCCCCCCCcceEEEEeeCCC
Q 013578          364 SSDG-KILAATHGSTLQWLSVET--G----------KVLDTAEKAHEG--EITCMAWA-PKTIPMGNQQVSVLATSSVDK  427 (440)
Q Consensus       364 s~~g-~~l~~~~~~~i~i~d~~~--~----------~~~~~~~~~h~~--~v~~v~~~-~~~~~~~~~~~~~l~t~~~Dg  427 (440)
                      +.++ .+|++-.|-.|+++.-.-  |          ..+...-++|..  .|..+-|- |..        .++++|+.-|
T Consensus       345 sh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs--------EyVvSGSDCG  416 (559)
T KOG1334|consen  345 SHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS--------EYVVSGSDCG  416 (559)
T ss_pred             cCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc--------ceEEecCccc
Confidence            9665 577777799999995432  3          223332267765  57777664 554        7999999999


Q ss_pred             eEEEEeCCCCC
Q 013578          428 KVKLWLAPSLE  438 (440)
Q Consensus       428 ~i~vw~~~~~~  438 (440)
                      .|.||+-.+++
T Consensus       417 hIFiW~K~t~e  427 (559)
T KOG1334|consen  417 HIFIWDKKTGE  427 (559)
T ss_pred             eEEEEecchhH
Confidence            99999977654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.36  E-value=2.6e-10  Score=100.16  Aligned_cols=193  Identities=14%  Similarity=0.160  Sum_probs=127.2

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      ++++-..++.|.+.|..+.+.+..+.........+.++|||+++++++.||.|.++|+.+.+        .+.+++.. .
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--------~v~~i~~G-~   78 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--------VVATIKVG-G   78 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--------EEEEEE-S-S
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--------EEEEEecC-C
Confidence            45667778999999999999999998755444557899999999999999999999997765        55556543 3


Q ss_pred             ceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ec-CCE
Q 013578          301 AVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-TH-GST  377 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~-~~~  377 (440)
                      ...++++++||+++++++ .++.+.++|.++.+.+..       ++............+..+..+|....++. -. .+.
T Consensus        79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~-------I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~  151 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT-------IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE  151 (369)
T ss_dssp             EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE-------EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred             CcceEEEcCCCCEEEEEecCCCceeEeccccccceee-------cccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence            467899999999988765 689999999987655432       21111111123445667888898885444 34 488


Q ss_pred             EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEE-eeCCCeEEEEeCCCC
Q 013578          378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT-SSVDKKVKLWLAPSL  437 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t-~~~Dg~i~vw~~~~~  437 (440)
                      |.+.|....+.+............+..|+|++        ++++. ...+..|-++|..++
T Consensus       152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg--------ry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG--------RYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             EEEEETTTSSCEEEEEEE--TTEEEEEE-TTS--------SEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEEeccccccceeeecccccccccccCccc--------ceeeecccccceeEEEeeccc
Confidence            88889877654432112244567789999998        66655 455778888988765

...

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.36  E-value=1.1e-09  Score=93.97  Aligned_cols=277  Identities=14%  Similarity=0.135  Sum_probs=170.7

Q ss_pred             cceeEEEEccCCCEEEEeeCCC---------------cEEEEecCCCCCcceeeEEecCCCCCC--Cc-eEEEccCCCeE
Q 013578           92 DSVTGLCFSSDGKCLATACADG---------------VIRVHKLDDASSKSFKFLRINLPPGGP--PT-AVAFADNATSI  153 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg---------------~v~vW~~~~~~~~~~~~~~~~~~~~~~--v~-~v~~~~~~~~l  153 (440)
                      ..|.-+.|||.++||.|=+..+               .+.+||+.++..     ...+.....+  .. -+.|+-+.++.
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i-----v~sf~~~~q~~~~Wp~~k~s~~D~y~  146 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI-----VFSFNGISQPYLGWPVLKFSIDDKYV  146 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCcee-----EeeccccCCcccccceeeeeecchhh
Confidence            4689999999999999966543               499999987742     2222222222  33 57788888876


Q ss_pred             EEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC--CCeEEE-----Eee
Q 013578          154 VVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD--GSTIIA-----SCS  226 (440)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~-----s~~  226 (440)
                      +-...    ..+++++....................+.|                      +|.  +. .|+     ...
T Consensus       147 ARvv~----~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi----------------------sP~~n~~-~la~~tPEk~~  199 (561)
T COG5354         147 ARVVG----SSLYIHEITDNIEEHPFKNLRPVGILDFSI----------------------SPEGNHD-ELAYWTPEKLN  199 (561)
T ss_pred             hhhcc----CeEEEEecCCccccCchhhccccceeeEEe----------------------cCCCCCc-eEEEEccccCC
Confidence            65532    356666642221111111110000001111                      121  11 122     135


Q ss_pred             CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-----------cCCCEEEEEeEecCCCceeeeeeeeee
Q 013578          227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-----------FTADVKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      ..+.+++|.+..+..+.+.......-..+.|++.|++|++-.           ...+++|+++....         +...
T Consensus       200 kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---------i~V~  270 (561)
T COG5354         200 KPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---------IPVE  270 (561)
T ss_pred             CCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---------ccee
Confidence            678899999987777665544444446789999999877542           12457788875322         2222


Q ss_pred             eccccceEEEEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe
Q 013578          296 KGHKSAVTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT  373 (440)
Q Consensus       296 ~~h~~~v~~~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  373 (440)
                      ....++|..++|.|.++.+++.+  .+-.+.++|++..-.. ..+                ...=+.+.|+|.+++++.+
T Consensus       271 ~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~-~~P----------------e~~rNT~~fsp~~r~il~a  333 (561)
T COG5354         271 KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRF-YFP----------------EQKRNTIFFSPHERYILFA  333 (561)
T ss_pred             ccccccceeeeecccCCceeEEecccccceeecccccceEE-ecC----------------CcccccccccCcccEEEEe
Confidence            25678999999999998876655  6788999999864211 000                1112358899999988874


Q ss_pred             c----CCEEEEEEcCCccchh-hhhccccCCeEEEEecCCCCCCCCCcceEEEEee------CCCeEEEEeCCCC
Q 013578          374 H----GSTLQWLSVETGKVLD-TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS------VDKKVKLWLAPSL  437 (440)
Q Consensus       374 ~----~~~i~i~d~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~------~Dg~i~vw~~~~~  437 (440)
                      .    .|.+.+||........ .+   ......-+.|+|++        .++.+..      .|..|+||++...
T Consensus       334 gF~nl~gni~i~~~~~rf~~~~~~---~~~n~s~~~wspd~--------qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         334 GFDNLQGNIEIFDPAGRFKVAGAF---NGLNTSYCDWSPDG--------QFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             cCCccccceEEeccCCceEEEEEe---ecCCceEeeccCCc--------eEEEecCCCcccccCcceEEEEecCc
Confidence            3    3799999988766554 33   23345667899998        6666553      2889999998654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=9.3e-10  Score=100.23  Aligned_cols=171  Identities=18%  Similarity=0.163  Sum_probs=99.5

Q ss_pred             eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEE-EecCCC--EEEEEeEecCCCceeeeeeeeeeeccccceEEEE
Q 013578          230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAA-AAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC  306 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  306 (440)
                      .|++||+.+++... +..........+|+|||+.|+. .+.+|.  |+++|+..+.         ...+..+.......+
T Consensus       243 ~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---------~~~lt~~~~~~~~p~  312 (448)
T PRK04792        243 EIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---------LTRITRHRAIDTEPS  312 (448)
T ss_pred             EEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---------eEECccCCCCccceE
Confidence            48888888776432 2222233456899999998875 456676  5555654332         233444555567889


Q ss_pred             EcCCCCEEEEEeC-CCc--EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CC--EEE
Q 013578          307 FAPNSEQIITASK-DGT--LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GS--TLQ  379 (440)
Q Consensus       307 ~~p~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~--~i~  379 (440)
                      |+|||++|+..+. ++.  |.++|+.++...        .+.     ..+.  .....+|+|||++|+...  ++  .|.
T Consensus       313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~--------~Lt-----~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~  377 (448)
T PRK04792        313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVS--------RLT-----FEGE--QNLGGSITPDGRSMIMVNRTNGKFNIA  377 (448)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCEE--------EEe-----cCCC--CCcCeeECCCCCEEEEEEecCCceEEE
Confidence            9999998876553 444  555566543211        000     0111  123468999999887643  33  567


Q ss_pred             EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee-CCCe--EEEEeCCC
Q 013578          380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS-VDKK--VKLWLAPS  436 (440)
Q Consensus       380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~--i~vw~~~~  436 (440)
                      ++|+.+++..... ..  .......|+|++        ++|+..+ .+|.  +.+++.+.
T Consensus       378 ~~dl~~g~~~~lt-~~--~~d~~ps~spdG--------~~I~~~~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        378 RQDLETGAMQVLT-ST--RLDESPSVAPNG--------TMVIYSTTYQGKQVLAAVSIDG  426 (448)
T ss_pred             EEECCCCCeEEcc-CC--CCCCCceECCCC--------CEEEEEEecCCceEEEEEECCC
Confidence            7888887653222 11  122345799998        5655544 4443  66666643

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.35  E-value=8.6e-12  Score=107.84  Aligned_cols=293  Identities=14%  Similarity=0.206  Sum_probs=180.3

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPTAVAFADNATSIVVATHN  159 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~  159 (440)
                      ..+..+.||+..|+.++--.+.+-+++++.|++|++|.+......  ...+.-....|..+|.++.|..+.++++++.  
T Consensus       726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD--  803 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD--  803 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc--
Confidence            356789999999999998888889999999999999998754321  2234456677889999999999999888774  


Q ss_pred             CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578          160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG  239 (440)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  239 (440)
                         ..+.+|+.-.......           ..|....+... .+..       .-+-+....++.|+...+|+++|.+..
T Consensus       804 ---~giHlWDPFigr~Laq-----------~~dapk~~a~~-~ikc-------l~nv~~~iliAgcsaeSTVKl~DaRsc  861 (1034)
T KOG4190|consen  804 ---GGIHLWDPFIGRLLAQ-----------MEDAPKEGAGG-NIKC-------LENVDRHILIAGCSAESTVKLFDARSC  861 (1034)
T ss_pred             ---CcceeecccccchhHh-----------hhcCcccCCCc-eeEe-------cccCcchheeeeccchhhheeeecccc
Confidence               4567776544321110           11111110000 0000       001122224455588899999999988


Q ss_pred             ceeeeee-----CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578          240 KLLGNVD-----TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI  314 (440)
Q Consensus       240 ~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  314 (440)
                      +....++     +....++++++.+.|++++++-.+|.|.+.|.++++        .+..++...-....++ .|..+.|
T Consensus       862 e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~--------vINswrpmecdllqla-apsdq~L  932 (1034)
T KOG4190|consen  862 EWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK--------VINSWRPMECDLLQLA-APSDQAL  932 (1034)
T ss_pred             cceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc--------eeccCCcccchhhhhc-CchhHHH
Confidence            7665554     344568899999999999999999999999998776        3444443333344443 3556677


Q ss_pred             EEEeCCCcEEE-EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc-cc---
Q 013578          315 ITASKDGTLRV-WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG-KV---  388 (440)
Q Consensus       315 ~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~-~~---  388 (440)
                      +....|.++.+ |..-.+....+.....    .+     .|-       +-.-|.-|++.. ++.+.+|.-... ..   
T Consensus       933 ~~saldHslaVnWhaldgimh~q~kppp----ep-----ahf-------lqsvgpSLV~a~~Gn~lgVYad~a~~ha~st  996 (1034)
T KOG4190|consen  933 AQSALDHSLAVNWHALDGIMHLQDKPPP----EP-----AHF-------LQSVGPSLVTAQNGNILGVYADSAELHAEST  996 (1034)
T ss_pred             HhhcccceeEeeehhcCCeeeeccCCCC----cc-----hhh-------hhccCceeEEeccCcEEEEEecchhhhhhhh
Confidence            77778888888 8655432211110000    00     000       011244455544 445566632111 11   


Q ss_pred             hhhh-hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEE
Q 013578          389 LDTA-EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL  431 (440)
Q Consensus       389 ~~~~-~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~v  431 (440)
                      +..+ .....+..++++--|-+        .-+..|.+.|.|.+
T Consensus       997 itKiR~d~f~G~lTala~LPLN--------~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  997 ITKIRPDEFPGTLTALAPLPLN--------CAFLAGNEHGAIAL 1032 (1034)
T ss_pred             hccccccccCCccceeeecccc--------chhhccCCCCceee
Confidence            1111 01234677888888876        67778888888875

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=3.3e-11  Score=96.76  Aligned_cols=173  Identities=13%  Similarity=0.224  Sum_probs=111.0

Q ss_pred             CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc-----cceEEEEEcCCC-CEEEEEeCC
Q 013578          247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK-----SAVTWLCFAPNS-EQIITASKD  320 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~p~~-~~l~s~~~d  320 (440)
                      .|...+.++.++.|...++++ .|-.|.+|++.....    .+ .+..++.|.     .-|++..|+|.. ..+.-.+..
T Consensus       170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~----sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk  243 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDG----SF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK  243 (460)
T ss_pred             cceeEeeeeeecCchheeeec-cceeeeeccccccCC----ce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence            456667889999988888777 478899999865431    11 233344443     458899999954 445556678


Q ss_pred             CcEEEEecCccccccCCCCccccc--cccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCcc-chhhhhccc-
Q 013578          321 GTLRVWNINVRYHLDEDPKTLKVL--PIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGK-VLDTAEKAH-  396 (440)
Q Consensus       321 g~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~-~~~~~~~~h-  396 (440)
                      |.|++-|++...............  +.......+-...|..+.|+++|+++++-+--++.+||+...+ ++.++ ..| 
T Consensus       244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi-~~h~  322 (460)
T COG5170         244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTI-PMHC  322 (460)
T ss_pred             CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceee-chHH
Confidence            999999999544332211111110  0011111222345788999999999999999999999997654 34433 122 


Q ss_pred             -----------cCCeE---EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          397 -----------EGEIT---CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       397 -----------~~~v~---~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                                 .+.|.   .+.|+.|.        ..+++|+..+..-++-.
T Consensus       323 ~l~~~l~d~YEnDaifdkFeisfSgd~--------~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         323 DLMDELNDVYENDAIFDKFEISFSGDD--------KHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHHHHhhhhccceeeeEEEEecCCc--------ccccccccccceeeecc
Confidence                       22333   46788776        78888888777777654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.35  E-value=7e-09  Score=89.10  Aligned_cols=282  Identities=10%  Similarity=0.027  Sum_probs=156.7

Q ss_pred             CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee---------cCCcceEEeeccccccccccccccC
Q 013578          113 GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH---------NLSGCSLYMYGEEKAISTNEGKQQS  183 (440)
Q Consensus       113 g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  183 (440)
                      ++|.+.|..+.+.     +.. ..-+.....+ ++||++.++++..         +  ...+.+++........+.....
T Consensus        27 ~~v~ViD~~~~~v-----~g~-i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~--~d~V~v~D~~t~~~~~~i~~p~   97 (352)
T TIGR02658        27 TQVYTIDGEAGRV-----LGM-TDGGFLPNPV-VASDGSFFAHASTVYSRIARGKR--TDYVEVIDPQTHLPIADIELPE   97 (352)
T ss_pred             ceEEEEECCCCEE-----EEE-EEccCCCcee-ECCCCCEEEEEeccccccccCCC--CCEEEEEECccCcEEeEEccCC
Confidence            7899999887542     211 1222333444 9999999999876         3  2456666655543222111100


Q ss_pred             CCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC-CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC
Q 013578          184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE-GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR  262 (440)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  262 (440)
                      .                .............+++||+.++++.-. +..|.+.|+.+++.+.++..... ..-...+.+..
T Consensus        98 ~----------------p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~~  160 (352)
T TIGR02658        98 G----------------PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDTF  160 (352)
T ss_pred             C----------------chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCcc
Confidence            0                000011122234458999955555534 88999999999999998876432 22222222222


Q ss_pred             eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE-EEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCc
Q 013578          263 FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW-LCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKT  340 (440)
Q Consensus       263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  340 (440)
                      +  +-+.||......+.....  .. ......+.+...++.. -.|.+ +|++++.... |+|.+.|+........  ..
T Consensus       161 ~--~~~~Dg~~~~v~~d~~g~--~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~--~~  232 (352)
T TIGR02658       161 F--MHCRDGSLAKVGYGTKGN--PK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL--PA  232 (352)
T ss_pred             E--EEeecCceEEEEecCCCc--eE-EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec--ce
Confidence            2  223455554443322221  11 0011111111111110 03455 8888777766 9999999754321110  11


Q ss_pred             cccccccccCCCCCeeeeeeEEeCCCCCEEEEec-----------CCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          341 LKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-----------GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       341 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      ...+........-....+.-++++++++.+.+..           .+.|.++|..+++.+..+..  ...+..++++||+
T Consensus       233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dg  310 (352)
T TIGR02658       233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDA  310 (352)
T ss_pred             eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCC
Confidence            1111111000011122233499999998776621           26899999999999998863  4479999999998


Q ss_pred             CCCCCCcce-EEEEee-CCCeEEEEeCCCCC
Q 013578          410 IPMGNQQVS-VLATSS-VDKKVKLWLAPSLE  438 (440)
Q Consensus       410 ~~~~~~~~~-~l~t~~-~Dg~i~vw~~~~~~  438 (440)
                              + +|++.. .++.|.+.|..+++
T Consensus       311 --------kp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       311 --------KPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             --------CeEEEEeCCCCCcEEEEECcCCe
Confidence                    5 666554 68899999998875

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.33  E-value=6.1e-09  Score=88.83  Aligned_cols=129  Identities=10%  Similarity=0.109  Sum_probs=94.7

Q ss_pred             EecCCCCeEEEEecCC-CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccc
Q 013578          256 AISPNGRFLAAAAFTA-DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHL  334 (440)
Q Consensus       256 ~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~  334 (440)
                      .+.-+++-++.|..|| .+-|||.+.+.         +..+...-+.|.++..+|+|++++.+.....+.+.|+.++...
T Consensus       366 r~~~~~e~~vigt~dgD~l~iyd~~~~e---------~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~  436 (668)
T COG4946         366 RIQVDPEGDVIGTNDGDKLGIYDKDGGE---------VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR  436 (668)
T ss_pred             EEccCCcceEEeccCCceEEEEecCCce---------EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence            3444555677777777 78888876543         5556667788999999999999999988889999999876432


Q ss_pred             cCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-----CCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          335 DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-----GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      .              .......-|+...|+|+++++|-+.     ...|++||+..++......  ..+.=.+-+|.|++
T Consensus       437 ~--------------idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~  500 (668)
T COG4946         437 L--------------IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDG  500 (668)
T ss_pred             E--------------ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCC
Confidence            1              1122234588999999999999874     3689999999988765432  33344566788887

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.28  E-value=1.6e-09  Score=85.44  Aligned_cols=175  Identities=11%  Similarity=0.009  Sum_probs=119.2

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      .+..++.|.++++.++.-+.........+-.+..+.++++++++++.+....|-.|.+.....-.     .........+
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~-----~~~~~a~t~D  204 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI-----ENIYEAPTSD  204 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee-----eeeEecccCC
Confidence            46677888888888876543333332222347789999999999999999999999987554211     1112333445


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC--EEEEe-cCCE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK--ILAAT-HGST  377 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~-~~~~  377 (440)
                      .=.+..|+.....+|++..||++.|||++.......         ........|...+..+.|++.|.  +|... .-+.
T Consensus       205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~---------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~  275 (344)
T KOG4532|consen  205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA---------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR  275 (344)
T ss_pred             CceeeeeccCcceEEEEecCCcEEEEEecccccchh---------hhcccCCCCCCceEEEEecCCCcceEEEEecCcce
Confidence            557889999999999999999999999985432211         11223345777899999998765  33333 4688


Q ss_pred             EEEEEcCCccchhhhh------cccc-CCeEEEEecCCC
Q 013578          378 LQWLSVETGKVLDTAE------KAHE-GEITCMAWAPKT  409 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~------~~h~-~~v~~v~~~~~~  409 (440)
                      +.+.|+++++..+.+.      ..|. ..|..-.|+.++
T Consensus       276 ~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n  314 (344)
T KOG4532|consen  276 VHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN  314 (344)
T ss_pred             EEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence            9999999887544331      1233 347777888776

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.28  E-value=1.5e-10  Score=96.28  Aligned_cols=158  Identities=14%  Similarity=0.151  Sum_probs=112.2

Q ss_pred             cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC---CCcEEEEecC
Q 013578          253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK---DGTLRVWNIN  329 (440)
Q Consensus       253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---dg~i~iwd~~  329 (440)
                      ..+..++.++++|++..+....+++++....    ..+....... ...-+.+.|..+......+..   ...+.+|...
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~  140 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPK----GAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSAD  140 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCC----cceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence            3456788899999999999988998876552    1112222221 122234444444444444333   3344445443


Q ss_pred             ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578          330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                      .+               .....-+|...++.++|+||++++.+++ |..|++-.......+..+.-||..-|..++.-++
T Consensus       141 ~~---------------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~  205 (390)
T KOG3914|consen  141 SG---------------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN  205 (390)
T ss_pred             cc---------------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence            21               1122346777789999999999999998 8999999888888888887899999999999998


Q ss_pred             CCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          409 TIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       409 ~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                               ..|++||.|++|++||+.++++
T Consensus       206 ---------~~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  206 ---------YLLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             ---------ceeeecCCCCcEEEEecccCCc
Confidence                     4799999999999999999875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.26  E-value=1.2e-08  Score=87.79  Aligned_cols=250  Identities=16%  Similarity=0.129  Sum_probs=131.3

Q ss_pred             EccCCCEEEEeeC----------CCcEEEEecCCCCCcceeeEEecCC------CCCCCceEEEccCCCeEEEEeecCCc
Q 013578           99 FSSDGKCLATACA----------DGVIRVHKLDDASSKSFKFLRINLP------PGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        99 ~s~dg~~l~t~s~----------dg~v~vW~~~~~~~~~~~~~~~~~~------~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      +||||+.|+.+..          +..|.+||..+.+...    ....+      .......++++|||+++++...+. .
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~----~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-~  127 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA----DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP-S  127 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe----EEccCCCchhhccCccceEEECCCCCEEEEecCCC-C
Confidence            9999998887755          7899999999875321    11111      123345889999999999876441 2


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ..+.+.+........+...      +         . ...+...........+.||....++-..+|....=.      .
T Consensus       128 ~~V~VvD~~~~kvv~ei~v------p---------~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~------~  185 (352)
T TIGR02658       128 PAVGVVDLEGKAFVRMMDV------P---------D-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP------T  185 (352)
T ss_pred             CEEEEEECCCCcEEEEEeC------C---------C-CcEEEEecCCccEEEeecCceEEEEecCCCceEEee------e
Confidence            3444444433311110000      0         0 000000000001111222322222222222211000      0


Q ss_pred             eeeeCCCCccc-EEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-----ccccceEEEEEcCCCCEEE
Q 013578          243 GNVDTNQLKNN-MAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-----GHKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       243 ~~~~~~~~~v~-~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~p~~~~l~  315 (440)
                      ..+.....++. .-.+.+ +|+++++..+ |+|.+.|+..........+... ...     -..+.+.-++++|++++++
T Consensus       186 ~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~-~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       186 EVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAF-TEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeec-cccccccccCCCcceeEEEcCCCCEEE
Confidence            00111000100 003455 8888877766 9999999644321111111111 111     1233445599999999887


Q ss_pred             EEe----------CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec--CCEEEEEE
Q 013578          316 TAS----------KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH--GSTLQWLS  382 (440)
Q Consensus       316 s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~~~i~i~d  382 (440)
                      ...          ..+.|.++|..+.+.+.....               ...+..++++||++ +|.+.+  ++.|.++|
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------------GHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------------CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence            743          124799999987755432110               11356799999999 776654  68899999


Q ss_pred             cCCccchhhh
Q 013578          383 VETGKVLDTA  392 (440)
Q Consensus       383 ~~~~~~~~~~  392 (440)
                      ..+++.+..+
T Consensus       329 ~~t~k~i~~i  338 (352)
T TIGR02658       329 AETGKELSSV  338 (352)
T ss_pred             CcCCeEEeee
Confidence            9999988877

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.25  E-value=1e-08  Score=102.18  Aligned_cols=175  Identities=15%  Similarity=0.145  Sum_probs=105.1

Q ss_pred             cEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeee---eeeeeec------cccceEEEEEcCCCCEE-EEEeCCC
Q 013578          253 NMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVT---SVMQLKG------HKSAVTWLCFAPNSEQI-ITASKDG  321 (440)
Q Consensus       253 ~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~------h~~~v~~~~~~p~~~~l-~s~~~dg  321 (440)
                      ..++++| ++.++++.+.++.|++||...+..   ....   ......+      .-.....|+++|++..| ++-+.++
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v---~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~  762 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT---RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS  762 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeE---EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC
Confidence            5789999 556666666788999999754320   0000   0000001      11245679999999854 4556678


Q ss_pred             cEEEEecCccccccC---CCCccc-cccccccCC---CCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhh
Q 013578          322 TLRVWNINVRYHLDE---DPKTLK-VLPIPLLDS---NGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAE  393 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~---~~~~~~-~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~  393 (440)
                      .|++||+.++.....   .+.... .........   ...-..-..++++++|.++++. .++.|++||..++.......
T Consensus       763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG  842 (1057)
T PLN02919        763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG  842 (1057)
T ss_pred             eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec
Confidence            999999986432100   000000 000000000   0001123478999999866664 48899999998876543221


Q ss_pred             ------------ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          394 ------------KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       394 ------------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                                  .++-.....|++++++        +++++-+.++.|++|++.+++
T Consensus       843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG--------~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        843 TGKAGFKDGKALKAQLSEPAGLALGENG--------RLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             cCCcCCCCCcccccccCCceEEEEeCCC--------CEEEEECCCCEEEEEECCCCc
Confidence                        1122357889999998        888888899999999998764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=5.1e-09  Score=91.09  Aligned_cols=255  Identities=16%  Similarity=0.198  Sum_probs=152.2

Q ss_pred             eEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEe----ecCCcceEEeecc
Q 013578           95 TGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVAT----HNLSGCSLYMYGE  170 (440)
Q Consensus        95 ~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----~~~~~~~~~~~~~  170 (440)
                      ++..|++|..+.|-- ..+.+.+|+.........      .-+...+..+.++|.+..-.++.    ..+....+++|..
T Consensus       129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~------kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~  201 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH------KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKY  201 (566)
T ss_pred             cccccccchhhhhhh-hcceEEEEecCCccceee------eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecc
Confidence            689999987644322 234699999887433211      12347789999998844322222    2334455666654


Q ss_pred             cccc--ccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee--C---------CceEEEEeCC
Q 013578          171 EKAI--STNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS--E---------GTDISIWHGK  237 (440)
Q Consensus       171 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~---------d~~i~vwd~~  237 (440)
                      ....  .....+.........+.|+                      +-|..+|+.++  -         ..++++++++
T Consensus       202 ~~~~~~~~~a~ksFFkadkvqm~WN----------------------~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~  259 (566)
T KOG2315|consen  202 PEEGQHQPVANKSFFKADKVQMKWN----------------------KLGTALLVLASTDVDKTNASYYGEQTLYLLATQ  259 (566)
T ss_pred             ccccccchhhhccccccceeEEEec----------------------cCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence            4211  1111111111111223333                      22332333322  1         2357788777


Q ss_pred             CCceeeeeeCCCCcccEEEecCCCCeEEEE--ecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578          238 TGKLLGNVDTNQLKNNMAAISPNGRFLAAA--AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  315 (440)
                      ...+.-.+ ...++|.++.|+++++.|++.  -.=.++.|||++..         .+..+  ..++=+++-|+|.|++|+
T Consensus       260 g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---------~v~df--~egpRN~~~fnp~g~ii~  327 (566)
T KOG2315|consen  260 GESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---------PVFDF--PEGPRNTAFFNPHGNIIL  327 (566)
T ss_pred             CceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---------EeEeC--CCCCccceEECCCCCEEE
Confidence            33333333 237899999999999887765  34567999998533         34444  467778999999999998


Q ss_pred             EEeC---CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-------CCEEEEEEcCC
Q 013578          316 TASK---DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-------GSTLQWLSVET  385 (440)
Q Consensus       316 s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~i~i~d~~~  385 (440)
                      .++-   -|.|-+||+.+.+++.....                ..-+-+.|+|||++++++.       |+.++||+.. 
T Consensus       328 lAGFGNL~G~mEvwDv~n~K~i~~~~a----------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-  390 (566)
T KOG2315|consen  328 LAGFGNLPGDMEVWDVPNRKLIAKFKA----------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-  390 (566)
T ss_pred             EeecCCCCCceEEEeccchhhcccccc----------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-
Confidence            8774   57899999997655432111                1123589999999998752       7899999975 


Q ss_pred             ccchhhhhccccCCeEEEEecCCC
Q 013578          386 GKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       386 ~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      |..+....  -......+.|-|-.
T Consensus       391 G~~l~~~~--f~sEL~qv~W~P~~  412 (566)
T KOG2315|consen  391 GSLLHEKM--FKSELLQVEWRPFN  412 (566)
T ss_pred             Cceeehhh--hhHhHhheeeeecC
Confidence            44443321  11157778887653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.22  E-value=5.4e-08  Score=95.34  Aligned_cols=312  Identities=16%  Similarity=0.166  Sum_probs=171.4

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEE----ecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVH----KLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW----~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      ..+.|.++.+-+|...++.+..+|.|.+.    +......+      ....-+.+|.+++||||+..++.++.++.  .+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E------~VG~vd~GI~a~~WSPD~Ella~vT~~~~--l~  145 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE------IVGSVDSGILAASWSPDEELLALVTGEGN--LL  145 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE------EEEEEcCcEEEEEECCCcCEEEEEeCCCE--EE
Confidence            45789999999999999999999999999    44433322      22223478999999999999999987632  22


Q ss_pred             Eeeccccccc----------------cccccccCCCCCCceee-----cccccc--cceeEEEeecccccccCCCCCeEE
Q 013578          166 YMYGEEKAIS----------------TNEGKQQSKLPGPEIKW-----EHHKVH--DKRAILTLFGASATYGTADGSTII  222 (440)
Q Consensus       166 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l  222 (440)
                      .+-..-..+.                ..-++....+.+..-.-     ......  ....+........+.+-.||. ++
T Consensus       146 ~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~-yF  224 (928)
T PF04762_consen  146 LMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE-YF  224 (928)
T ss_pred             EEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc-EE
Confidence            2211111110                00011111111100000     000000  000001112334455678888 55


Q ss_pred             EEeeC------CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec---CCCEEEEEeEecCCCceeeeeeee
Q 013578          223 ASCSE------GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF---TADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       223 ~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      ++.+.      -..++||+-+ |+....-+.-.+--.+++|.|.|+++|+...   ...|.+|.-+..+     ......
T Consensus       225 AVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-----hgeF~l  298 (928)
T PF04762_consen  225 AVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR-----HGEFTL  298 (928)
T ss_pred             EEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-----eeeEec
Confidence            54442      2579999965 6654444433444567899999999998865   3345556532211     111222


Q ss_pred             eeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-----
Q 013578          294 QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-----  368 (440)
Q Consensus       294 ~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-----  368 (440)
                      .+......|..+.|++|+..||..-.|. |.+|-..+...--         +.....  .....+..+.|+|...     
T Consensus       299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYL---------Kqei~~--~~~~~~~~~~Wdpe~p~~L~v  366 (928)
T PF04762_consen  299 RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYL---------KQEIRF--SSSESVNFVKWDPEKPLRLHV  366 (928)
T ss_pred             CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEE---------EEEEEc--cCCCCCCceEECCCCCCEEEE
Confidence            2234566799999999999999887664 9999887543210         000000  0000111245555322     


Q ss_pred             ----------------------------EEEEecCCEEEEEEcCCccchh---hhhccccCCeEEEEecCCCCCCCCCcc
Q 013578          369 ----------------------------ILAATHGSTLQWLSVETGKVLD---TAEKAHEGEITCMAWAPKTIPMGNQQV  417 (440)
Q Consensus       369 ----------------------------~l~~~~~~~i~i~d~~~~~~~~---~~~~~h~~~v~~v~~~~~~~~~~~~~~  417 (440)
                                                  .+++-++..+.+-.++..-...   ...-.-..+|.+++|++++        
T Consensus       367 ~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~--------  438 (928)
T PF04762_consen  367 LTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN--------  438 (928)
T ss_pred             EecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC--------
Confidence                                        2222223333333333222111   0111235689999999997        


Q ss_pred             eEEEEeeCCCeEEEEeCCC
Q 013578          418 SVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       418 ~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ..+++-..||.|.+|....
T Consensus       439 ~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  439 SRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             CeEEEEECCCCEEEEEecC
Confidence            5688889999999998654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.22  E-value=4.6e-10  Score=93.45  Aligned_cols=102  Identities=22%  Similarity=0.296  Sum_probs=78.2

Q ss_pred             eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee-eeccccceE
Q 013578          225 CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ-LKGHKSAVT  303 (440)
Q Consensus       225 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~h~~~v~  303 (440)
                      .++...+.+|....+.+ ..+-+|-..+..++++||+++++++..|.+|++-......        .+.. .-||+..|.
T Consensus       128 agD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--------~IesfclGH~eFVS  198 (390)
T KOG3914|consen  128 AGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--------VIESFCLGHKEFVS  198 (390)
T ss_pred             cCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc--------chhhhccccHhhee
Confidence            34455566777665433 3445788889999999999999999999999997764332        2222 347999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCccccccC
Q 013578          304 WLCFAPNSEQIITASKDGTLRVWNINVRYHLDE  336 (440)
Q Consensus       304 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~  336 (440)
                      .++.-++ ..|+++|.|+++++||+++++++..
T Consensus       199 ~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  199 TISLTDN-YLLLSGSGDKTLRLWDITSGKLLDT  230 (390)
T ss_pred             eeeeccC-ceeeecCCCCcEEEEecccCCcccc
Confidence            9999865 4589999999999999999988743

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.21  E-value=2.9e-10  Score=89.04  Aligned_cols=93  Identities=22%  Similarity=0.259  Sum_probs=70.7

Q ss_pred             EEEEeCCCCceeeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578          231 ISIWHGKTGKLLGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP  309 (440)
Q Consensus       231 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  309 (440)
                      .+.|+++..+.+..-......+++++-+|. .+.+++|+.||.+.+||.+...       .+...++.|+.+|+.+-|+|
T Consensus       161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~eV~FHp  233 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIWEVHFHP  233 (319)
T ss_pred             eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhhheeccC
Confidence            566766544332222222334888888884 5677888999999999998764       25667889999999999999


Q ss_pred             -CCCEEEEEeCCCcEEEEecCc
Q 013578          310 -NSEQIITASKDGTLRVWNINV  330 (440)
Q Consensus       310 -~~~~l~s~~~dg~i~iwd~~~  330 (440)
                       ++..|+++++||.+..||..+
T Consensus       234 k~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  234 KNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CCchheeEecCCCcEEEEcCCC
Confidence             667899999999999999874

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=3.6e-10  Score=101.27  Aligned_cols=294  Identities=18%  Similarity=0.265  Sum_probs=179.5

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCC--eEEEEeecCCcceEEee
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNAT--SIVVATHNLSGCSLYMY  168 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~--~l~~~~~~~~~~~~~~~  168 (440)
                      .+.+.++..+|.|+-+|.++.-|. .+-|++..-..... +....  .-.|-.+.|++...  +-++....         
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~-l~h~t--pw~vad~qws~h~a~~~wiVsts~---------   90 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRW-LHHIT--PWQVADVQWSPHPAKPYWIVSTSN---------   90 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCcee-eeccC--cchhcceecccCCCCceeEEecCc---------
Confidence            567889999999999999998884 45577654333221 11111  13466677776543  11111111         


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeec----ccccccCCCCCeEEEEeeCCceEEEEeCCCCc-eee
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGK-LLG  243 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~  243 (440)
                                        ...+.|+........+-....+    ...+-+.+.....+++|+-|..+..||+++.. ++.
T Consensus        91 ------------------qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y  152 (1081)
T KOG0309|consen   91 ------------------QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY  152 (1081)
T ss_pred             ------------------chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee
Confidence                              1112233322222222221111    12223345555589999999999999998754 455


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCc
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGT  322 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~  322 (440)
                      ....-......++|+-....+.+.+....|.+||++.+..       ++..+++|...|.+++|.. ....+.+++.|++
T Consensus       153 s~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~-------pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t  225 (1081)
T KOG0309|consen  153 STSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST-------PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT  225 (1081)
T ss_pred             eeecccccCceeeecccCcchhhhccCCceEEEeccCCCc-------ceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence            5555556678899998655555666778899999998773       7788889999999999965 2345789999999


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC--EEEEe-cCCEEEE---------EEcCCc-cch
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK--ILAAT-HGSTLQW---------LSVETG-KVL  389 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~-~~~~i~i---------~d~~~~-~~~  389 (440)
                      |+.||.........     +..        .....+..-.+-|-|.  ++.-. ++..+.+         |+..++ +.+
T Consensus       226 vkfw~y~kSt~e~~-----~~v--------tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pV  292 (1081)
T KOG0309|consen  226 VKFWDYSKSTTESK-----RTV--------TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPV  292 (1081)
T ss_pred             eeeecccccccccc-----eec--------cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcce
Confidence            99999875322110     000        1112244455555444  22211 1223333         333333 456


Q ss_pred             hhhhccccCCeEEEEecCCCCCCC--CCcceEEEEeeCCCeEEEEeCCC
Q 013578          390 DTAEKAHEGEITCMAWAPKTIPMG--NQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       390 ~~~~~~h~~~v~~v~~~~~~~~~~--~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +.+ .||++.|....|-..+-..+  ..++-+|+|-+.|..+|+|.+.+
T Consensus       293 h~F-~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  293 HTF-VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             eee-cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            677 69999998888865432111  12336899999999999998864

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.20  E-value=1.4e-09  Score=101.15  Aligned_cols=141  Identities=24%  Similarity=0.285  Sum_probs=111.0

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      ++++|+--+.|.+|+......-..+.+|.+.+..+.++-||.++++.++|..+++|++.+.+.       .....-+|..
T Consensus       147 ~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~-------~~~~~fgHsa  219 (967)
T KOG0974|consen  147 YIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV-------LGCTGFGHSA  219 (967)
T ss_pred             EEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc-------cCcccccccc
Confidence            788899899999999873333335789999999999999999999999999999999987662       2235668999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQ  379 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~  379 (440)
                      .|+.+.|+|+  .++|++.|-+.++|+.+.....        .+     . ......+..++..++..+++++ .|+.++
T Consensus       220 Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~--------~y-----~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk  283 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE--------VY-----D-EHSGKGIWKIAVPIGVIIKVTGGNDSTLK  283 (967)
T ss_pred             eeEEEEeccc--eeEEeccceEEEEEecccceeh--------hh-----h-hhhhcceeEEEEcCCceEEEeeccCcchh
Confidence            9999999998  8999999999999976533211        11     0 1112347788998888877774 589999


Q ss_pred             EEEcC
Q 013578          380 WLSVE  384 (440)
Q Consensus       380 i~d~~  384 (440)
                      +|+..
T Consensus       284 ~~~l~  288 (967)
T KOG0974|consen  284 LWDLN  288 (967)
T ss_pred             hhhhh
Confidence            99874

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.19  E-value=2e-07  Score=91.54  Aligned_cols=305  Identities=16%  Similarity=0.221  Sum_probs=173.7

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCC-------------CCC---------cceee------------EEec--
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDD-------------ASS---------KSFKF------------LRIN--  134 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~-------------~~~---------~~~~~------------~~~~--  134 (440)
                      ...|.|++||||+..|+....++++.+-.-+-             +..         +..++            ....  
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            56899999999999999999898887754311             000         00000            0000  


Q ss_pred             ------CCCCCCCceEEEccCCCeEEEEeec--CC-cceEEeeccccccccccccccCCCCCCceeecccccccceeEEE
Q 013578          135 ------LPPGGPPTAVAFADNATSIVVATHN--LS-GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILT  205 (440)
Q Consensus       135 ------~~~~~~v~~v~~~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (440)
                            ......-..++|-.||.++++.+.+  .. ...+++|+.+........... .+ ...                
T Consensus       200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~-gL-e~~----------------  261 (928)
T PF04762_consen  200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVD-GL-EGA----------------  261 (928)
T ss_pred             ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCC-Cc-cCC----------------
Confidence                  0023355678999999999999873  22 578899988754333222111 11 112                


Q ss_pred             eecccccccCCCCCeEEEEeeC---CceEEEEeCCCCceeeeee----CCCCcccEEEecCCCCeEEEEecCCCEEEEEe
Q 013578          206 LFGASATYGTADGSTIIASCSE---GTDISIWHGKTGKLLGNVD----TNQLKNNMAAISPNGRFLAAAAFTADVKVWEI  278 (440)
Q Consensus       206 ~~~~~~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  278 (440)
                            ..+.|.|. ++++...   ...|.+|. ++|..-..+.    .....+..+.|++|+..||+...|. |++|-.
T Consensus       262 ------l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~  332 (928)
T PF04762_consen  262 ------LSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR  332 (928)
T ss_pred             ------ccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence                  23367787 6665543   34466676 3454433332    3456789999999999999987655 999987


Q ss_pred             EecCCCceeeeeeeeeeec-cccceEEEEEcCCC-CEEEEEeCCCcEEEEecCccccccC-------------C------
Q 013578          279 VYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAPNS-EQIITASKDGTLRVWNINVRYHLDE-------------D------  337 (440)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~-------------~------  337 (440)
                      ..-.      +...+.+.- ....+..+.|+|.. ..|...+.+|.+..+++.-......             +      
T Consensus       333 ~NYH------WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lll  406 (928)
T PF04762_consen  333 SNYH------WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLL  406 (928)
T ss_pred             eCCE------EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEE
Confidence            4322      212222221 22345569999954 4566777667776654431111000             0      


Q ss_pred             -CCccccccccccCC-CCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcCCccc--------hhhhh---------cccc
Q 013578          338 -PKTLKVLPIPLLDS-NGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGKV--------LDTAE---------KAHE  397 (440)
Q Consensus       338 -~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~~--------~~~~~---------~~h~  397 (440)
                       +-....++.|+... -.-...|..++|++++..+++ ..+|.|.+|.......        ...+.         ....
T Consensus       407 Tpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (928)
T PF04762_consen  407 TPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPL  486 (928)
T ss_pred             ecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccccc
Confidence             00111111111110 112345889999999875554 6799999988543321        11111         0123


Q ss_pred             CCeEEEEecCCCCCCCCCcceEEEEeeCC---CeEEEEeCCC
Q 013578          398 GEITCMAWAPKTIPMGNQQVSVLATSSVD---KKVKLWLAPS  436 (440)
Q Consensus       398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~D---g~i~vw~~~~  436 (440)
                      ..+..++|..+.        .+++....+   ..+.++++..
T Consensus       487 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~  520 (928)
T PF04762_consen  487 GSLRQLAWLNDD--------TLLVLSDSDSNQSKIVLVDIDD  520 (928)
T ss_pred             ccEEEEEEeCCC--------EEEEEEecCcccceEEEEEecc
Confidence            457888888775        555555544   6777777743

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.2e-09  Score=92.42  Aligned_cols=263  Identities=13%  Similarity=0.151  Sum_probs=164.5

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      |.+.|+.+.-+ -.+++.+++.||.++.|.-..-..  ......+..|-..+.+++.+-++                   
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG--vEfVKhFraHL~~I~sl~~S~dg-------------------   65 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG--VEFVKHFRAHLGVILSLAVSYDG-------------------   65 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccc--eeehhhhHHHHHHHHhhhccccc-------------------
Confidence            88888887765 457999999999999997543211  12233333344444444443332                   


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC-CceEEEEeCCCCceeeeeeCC
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE-GTDISIWHGKTGKLLGNVDTN  248 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~  248 (440)
                                                                       . ++.+.+. |..++++|+.+-..+..++..
T Consensus        66 -------------------------------------------------~-L~~Sv~d~Dhs~KvfDvEn~DminmiKL~   95 (558)
T KOG0882|consen   66 -------------------------------------------------W-LFRSVEDPDHSVKVFDVENFDMINMIKLV   95 (558)
T ss_pred             -------------------------------------------------e-eEeeccCcccceeEEEeeccchhhhcccc
Confidence                                                             2 5666555 888999998877665544433


Q ss_pred             CCcccEEEecCCC---CeEEE-EecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEE
Q 013578          249 QLKNNMAAISPNG---RFLAA-AAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLR  324 (440)
Q Consensus       249 ~~~v~~~~~s~~~---~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~  324 (440)
                      .-+-.+-.+...|   ..+++ .-.+|.|.++|-....      .+....-.-|..+|.++.+.|-+..+++....|.|.
T Consensus        96 ~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~------~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVE  169 (558)
T KOG0882|consen   96 DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF------CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVE  169 (558)
T ss_pred             cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc------CccceecccccCceEEEEeeccccceeeccccceeE
Confidence            3222222233333   13333 3467899999965432      112333445999999999999999999999999999


Q ss_pred             EEecCccccc-cCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcCCccchhhhhc--------
Q 013578          325 VWNINVRYHL-DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGKVLDTAEK--------  394 (440)
Q Consensus       325 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~~~~~~~~--------  394 (440)
                      -|......+. .............++..........++.|+|+|..++. +.|..|++++..+|+.++.+..        
T Consensus       170 yWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q  249 (558)
T KOG0882|consen  170 YWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQ  249 (558)
T ss_pred             eecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhc
Confidence            9998741110 00000000111122333334445678999999999987 5589999999999987765530        


Q ss_pred             -----------------------cccC-CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          395 -----------------------AHEG-EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       395 -----------------------~h~~-~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                                             .|.. .-+.+.|...+        ++|+-|+-=| |+|.++.+.++
T Consensus       250 ~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~--------~flly~t~~g-ikvin~~tn~v  309 (558)
T KOG0882|consen  250 PKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG--------NFLLYGTILG-IKVINLDTNTV  309 (558)
T ss_pred             cccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC--------CEEEeeccee-EEEEEeecCeE
Confidence                                   1111 23455676666        7888887665 88888877653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.17  E-value=4.7e-10  Score=100.26  Aligned_cols=244  Identities=14%  Similarity=0.144  Sum_probs=153.1

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCccee----------eEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFK----------FLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~----------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ....|++|+....|+|.|+.||.++|-.+.+.......          .-+...+|...|..+.|+.+.           
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-----------   83 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-----------   83 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-----------
Confidence            46789999999999999999999999998765432110          011222333334333333222           


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                                                                                ..|.+...+|.|.+|-+-.+.-
T Consensus        84 ----------------------------------------------------------QKLTtSDt~GlIiVWmlykgsW  105 (1189)
T KOG2041|consen   84 ----------------------------------------------------------QKLTTSDTSGLIIVWMLYKGSW  105 (1189)
T ss_pred             ----------------------------------------------------------ccccccCCCceEEEEeeecccH
Confidence                                                                      1577778889999998887754


Q ss_pred             eeee--eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578          242 LGNV--DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       242 ~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      ...+  ....+.|.+++|+.+|..++....||.|.+=.+....     -  --..+++  .....+.|++|.+.++.+-.
T Consensus       106 ~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-----I--wgKeLkg--~~l~hv~ws~D~~~~Lf~~a  176 (1189)
T KOG2041|consen  106 CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-----I--WGKELKG--QLLAHVLWSEDLEQALFKKA  176 (1189)
T ss_pred             HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-----e--cchhcch--heccceeecccHHHHHhhhc
Confidence            4333  2235668899999999999999999999876654322     0  0112222  12347889999998888888


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe--------CCCCCEEEEec-CCEEEEEEcCCccchh
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL--------SSDGKILAATH-GSTLQWLSVETGKVLD  390 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~~g~~l~~~~-~~~i~i~d~~~~~~~~  390 (440)
                      +|.+.+||.+......-...+.-.... .....+  ..+..+.|        -||...|+++. +|.+.+-.-.......
T Consensus       177 nge~hlydnqgnF~~Kl~~~c~Vn~tg-~~s~~~--~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv  253 (1189)
T KOG2041|consen  177 NGETHLYDNQGNFERKLEKDCEVNGTG-IFSNFP--TKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV  253 (1189)
T ss_pred             CCcEEEecccccHHHhhhhceEEeeee-eecCCC--ccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence            999999998755432211111100000 001001  11223333        35777888876 6777776544444333


Q ss_pred             hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578          391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD  426 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D  426 (440)
                      .+.  -.-.|..+.|+++|        ..|+.+|.|
T Consensus       254 v~d--tgm~~vgakWnh~G--------~vLAvcG~~  279 (1189)
T KOG2041|consen  254 VVD--TGMKIVGAKWNHNG--------AVLAVCGND  279 (1189)
T ss_pred             EEe--cccEeecceecCCC--------cEEEEccCc
Confidence            332  23568899999999        899998875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.17  E-value=1.9e-07  Score=75.04  Aligned_cols=144  Identities=13%  Similarity=0.173  Sum_probs=77.4

Q ss_pred             eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec-cccceEEEEEcCCCCEEEEEeCCCc-EEEEecCccccccCCCCc
Q 013578          263 FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAPNSEQIITASKDGT-LRVWNINVRYHLDEDPKT  340 (440)
Q Consensus       263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~  340 (440)
                      .|++-..+|.++-|-+..+......+. ....+.. +...|.++.++|..++|+.|+.... -..+...           
T Consensus       111 ELlvi~Y~G~L~Sy~vs~gt~q~y~e~-hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~-----------  178 (282)
T PF15492_consen  111 ELLVINYRGQLRSYLVSVGTNQGYQEN-HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKAS-----------  178 (282)
T ss_pred             eEEEEeccceeeeEEEEcccCCcceee-EEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccccc-----------
Confidence            566777888888888754332111111 2223333 3668999999999888777664221 0000000           


Q ss_pred             cccccccccCCCCCeeeeeeEEeCCCCCEEEEecCC------EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCC
Q 013578          341 LKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS------TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGN  414 (440)
Q Consensus       341 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~  414 (440)
                                 ........-+.-+|..+.+....++      +..++.+-+.+..... ......|..|..+||+     
T Consensus       179 -----------~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~-~~~~d~i~kmSlSPdg-----  241 (282)
T PF15492_consen  179 -----------SCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ-GQEQDGIFKMSLSPDG-----  241 (282)
T ss_pred             -----------ccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc-ccCCCceEEEEECCCC-----
Confidence                       0000001111112222222221111      1233333332222111 2345689999999999     


Q ss_pred             CcceEEEEeeCCCeEEEEeCCCCC
Q 013578          415 QQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       415 ~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                         ..||+...+|.|.+|++++.+
T Consensus       242 ---~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  242 ---SLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             ---CEEEEEEcCCeEEEEecCcch
Confidence               899999999999999999764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.14  E-value=5.8e-10  Score=109.29  Aligned_cols=174  Identities=11%  Similarity=0.182  Sum_probs=138.6

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK  299 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  299 (440)
                      +.++|+.||.|++|....++.+..++. ....++.+.|+.+|+.+.++..||.+.+|....         ......+.|.
T Consensus      2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p---------k~~~s~qchn 2292 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP---------KPYTSWQCHN 2292 (2439)
T ss_pred             eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC---------cceeccccCC
Confidence            889999999999999988887766642 347888999999999999999999999999752         2566778898


Q ss_pred             cceEEEEEcCCCCEEEEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578          300 SAVTWLCFAPNSEQIITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G  375 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~  375 (440)
                      .....+.|-.  ..+++++   .++.+.+||......       ..      .....|...++++++.|..++|.+|+ +
T Consensus      2293 k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-------~s------~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2293 KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-------NS------LVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             ccccceeeee--hhhhccccCCCCCcccchhcccCcc-------cc------eeeeecCCCceEEEEcCcceEEEecCCc
Confidence            8888888854  5667665   477899999763211       11      11146667789999999999999877 8


Q ss_pred             CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      |.|++||++..++++.++.          ++..         .++++|+..|.++||++...
T Consensus      2358 G~v~l~D~rqrql~h~~~~----------~~~~---------~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA----------LDTR---------EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             CcEEEeehHHHHHHHHhhh----------hhhh---------heeeccCcccceEEEEcccc
Confidence            9999999999888888752          4422         69999999999999999753

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.13  E-value=3e-07  Score=76.32  Aligned_cols=172  Identities=15%  Similarity=0.207  Sum_probs=108.8

Q ss_pred             CCceEEEEeCC-CCceeeeeeCCCCcccEEEecCCCCeEEEEec-------CC-----------CEEEEEeEecCCCcee
Q 013578          227 EGTDISIWHGK-TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-------TA-----------DVKVWEIVYSKDGLVK  287 (440)
Q Consensus       227 ~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------dg-----------~i~i~d~~~~~~~~~~  287 (440)
                      ..|.|-|||.. +.+.+.++..+......+.+.|||+.|+++..       .|           .+...|..++.     
T Consensus        75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~-----  149 (305)
T PF07433_consen   75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA-----  149 (305)
T ss_pred             CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-----
Confidence            35779999998 66778888888877888999999988888731       12           23333333332     


Q ss_pred             eeeeeeee--eccccceEEEEEcCCCCEEEEEeCCCc-------EEEEecCccccccCCCCccccccccccCCCCCeeee
Q 013578          288 AVTSVMQL--KGHKSAVTWLCFAPNSEQIITASKDGT-------LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY  358 (440)
Q Consensus       288 ~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  358 (440)
                       ......+  .-|+..|..+++.++|..++..-..|.       |-+++....         ...+..+......-...+
T Consensus       150 -ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---------~~~~~~p~~~~~~l~~Y~  219 (305)
T PF07433_consen  150 -LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---------LRLLPAPEEQWRRLNGYI  219 (305)
T ss_pred             -eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---------ceeccCChHHHHhhCCce
Confidence             0112224  347788999999999876554433322       333333211         111111111111222347


Q ss_pred             eeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578          359 DRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       359 ~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~  425 (440)
                      -+++++.++.++++++  .+.+.+||..+++.+...   .-..+..++-.+++         +++|.+.
T Consensus       220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~---~l~D~cGva~~~~~---------f~~ssG~  276 (305)
T PF07433_consen  220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV---PLPDACGVAPTDDG---------FLVSSGQ  276 (305)
T ss_pred             EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc---ccCceeeeeecCCc---------eEEeCCC
Confidence            7899999999998876  789999999999998765   23456777777774         6666654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.12  E-value=1.5e-09  Score=88.54  Aligned_cols=205  Identities=14%  Similarity=0.151  Sum_probs=147.3

Q ss_pred             EEEEeeCCceEEEEeCC-CCceeeeee-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          221 IIASCSEGTDISIWHGK-TGKLLGNVD-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~-~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      -+++.+.|.++++|--+ .++.-..+. ....+++++.+.++...|++|-.+|++.-+.+...-    ...........|
T Consensus        38 gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf----nkm~~~r~~~~h  113 (404)
T KOG1409|consen   38 GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF----NKMTFLKDYLAH  113 (404)
T ss_pred             CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh----hhcchhhhhhhh
Confidence            58899999999999543 343322222 235678899999999999999999999988764332    112244556679


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccC---------------------CCC------ccccccccccCC
Q 013578          299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE---------------------DPK------TLKVLPIPLLDS  351 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------------~~~------~~~~~~~~~~~~  351 (440)
                      ...|..+-|+-...++++.+.|..+.---.+.+..+..                     ...      ........+...
T Consensus       114 ~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~  193 (404)
T KOG1409|consen  114 QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTF  193 (404)
T ss_pred             hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEE
Confidence            99999999998888999998887665322222211110                     000      000011234455


Q ss_pred             CCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578          352 NGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK  430 (440)
Q Consensus       352 ~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~  430 (440)
                      .+|...+.+++|.+..+.|.+|. |..+.+||+.-.+-......+|.+.|..+...+--        +.|++++.||.|-
T Consensus       194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t--------~~l~S~~edg~i~  265 (404)
T KOG1409|consen  194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT--------RQLISCGEDGGIV  265 (404)
T ss_pred             cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh--------eeeeeccCCCeEE
Confidence            67888899999999999888875 89999999977665554447899999999888876        8999999999999


Q ss_pred             EEeCCCC
Q 013578          431 LWLAPSL  437 (440)
Q Consensus       431 vw~~~~~  437 (440)
                      +|+++..
T Consensus       266 ~w~mn~~  272 (404)
T KOG1409|consen  266 VWNMNVK  272 (404)
T ss_pred             EEeccce
Confidence            9999764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=5e-08  Score=87.64  Aligned_cols=130  Identities=15%  Similarity=0.171  Sum_probs=73.6

Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-CC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL  305 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~  305 (440)
                      ..|.++|+.+++.. .+..+........|+|||+.|+..+. .+  .|+++|+..+.   ..    .....+.    ...
T Consensus       257 ~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---~~----rlt~~g~----~~~  324 (419)
T PRK04043        257 PDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---VE----QVVFHGK----NNS  324 (419)
T ss_pred             cEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---eE----eCccCCC----cCc
Confidence            45888888776543 34333333345689999998887764 34  45566654333   00    1111121    124


Q ss_pred             EEcCCCCEEEEEeCC---------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--
Q 013578          306 CFAPNSEQIITASKD---------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--  374 (440)
Q Consensus       306 ~~~p~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--  374 (440)
                      .|+|+|++|+..+..         ..|.+.|+.++..        +.+.    . .+   ......|+|||+.++...  
T Consensus       325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--------~~LT----~-~~---~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI--------RRLT----A-NG---VNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe--------EECC----C-CC---CcCCeEECCCCCEEEEEEcc
Confidence            899999988766543         2577777765421        1111    1 11   122488999999877643  


Q ss_pred             --CCEEEEEEcCCc
Q 013578          375 --GSTLQWLSVETG  386 (440)
Q Consensus       375 --~~~i~i~d~~~~  386 (440)
                        ...+.+.++...
T Consensus       389 ~~~~~L~~~~l~g~  402 (419)
T PRK04043        389 GNQSALGIIRLNYN  402 (419)
T ss_pred             CCcEEEEEEecCCC
Confidence              234666676543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.12  E-value=2.3e-07  Score=79.53  Aligned_cols=250  Identities=16%  Similarity=0.156  Sum_probs=153.2

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCC-cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADG-VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM  167 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg-~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~  167 (440)
                      +|.+.|.-..+..+++-++.|..|| .+-|+|..+++.+      ...+.-+.|.++..+++|+++++            
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k------r~e~~lg~I~av~vs~dGK~~vv------------  418 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK------RIEKDLGNIEAVKVSPDGKKVVV------------  418 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE------EeeCCccceEEEEEcCCCcEEEE------------
Confidence            6888899999998888999999998 8999999877532      22233367888888888775444            


Q ss_pred             eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT  247 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  247 (440)
                                                                               +.....|.+.|+.++.....-+.
T Consensus       419 ---------------------------------------------------------aNdr~el~vididngnv~~idkS  441 (668)
T COG4946         419 ---------------------------------------------------------ANDRFELWVIDIDNGNVRLIDKS  441 (668)
T ss_pred             ---------------------------------------------------------EcCceEEEEEEecCCCeeEeccc
Confidence                                                                     44445577788888766544445


Q ss_pred             CCCcccEEEecCCCCeEEEEecCC----CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-----
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTA----DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-----  318 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-----  318 (440)
                      ..+-|+.+.|+|+++++|-+--+|    .|++||+..++         +.......+-=.+-+|.|++++|.--+     
T Consensus       442 ~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K---------iy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLd  512 (668)
T COG4946         442 EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK---------IYDVTTPTAYDFSPAFDPDGRYLYFLSARSLD  512 (668)
T ss_pred             ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe---------EEEecCCcccccCcccCCCCcEEEEEeccccC
Confidence            567789999999999999886665    58999987654         222332333335668889999876544     


Q ss_pred             --CCCcEEEEecCcccc---c----------cCCCCc---------cccccccccCCCCCeeeeeeEEeCCCCCEEEE--
Q 013578          319 --KDGTLRVWNINVRYH---L----------DEDPKT---------LKVLPIPLLDSNGATLQYDRLSLSSDGKILAA--  372 (440)
Q Consensus       319 --~dg~i~iwd~~~~~~---~----------~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--  372 (440)
                        .|..+.-+....-..   .          .+.+..         ...+........-.+....+++--.+|+.+..  
T Consensus       513 Ps~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~  592 (668)
T COG4946         513 PSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSY  592 (668)
T ss_pred             CCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEEEe
Confidence              243333222211000   0          000000         00000000000111111223343445543322  


Q ss_pred             -----------ec--CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          373 -----------TH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       373 -----------~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                                 |.  -|.+.+||+++.+...     -...+.++..++|+        ..++. -.||.+++++++.
T Consensus       593 pi~Gefs~yy~gq~~kG~l~~ydletkk~~e-----~k~nvss~rlS~D~--------s~ilv-k~d~kl~~f~vek  655 (668)
T COG4946         593 PIHGEFSQYYWGQPEKGRLEKYDLETKKVEE-----YKDNVSSFRLSSDG--------SKILV-KLDGKLRLFDVEK  655 (668)
T ss_pred             eccchhhhhhcCCCccceEEEEecchhhHHH-----HhcccceEEEcCCC--------CEEEE-EeCCeEEEEeccc
Confidence                       11  2677888887765432     23468999999998        56665 7899999999976

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.11  E-value=1.7e-10  Score=65.48  Aligned_cols=37  Identities=41%  Similarity=0.729  Sum_probs=35.4

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEe
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK  119 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~  119 (440)
                      +++++++|.+.|++|+|+|++++|++|+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5778999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.09  E-value=5.1e-09  Score=85.57  Aligned_cols=214  Identities=13%  Similarity=0.161  Sum_probs=130.1

Q ss_pred             CcceeEEEEccCCC--EEEEeeCCCcEEEEecCCCCCcc------------------ee-------------eEEecCCC
Q 013578           91 GDSVTGLCFSSDGK--CLATACADGVIRVHKLDDASSKS------------------FK-------------FLRINLPP  137 (440)
Q Consensus        91 ~~~V~~l~~s~dg~--~l~t~s~dg~v~vW~~~~~~~~~------------------~~-------------~~~~~~~~  137 (440)
                      ...|+.++|.++++  .++....|.+|++|.+.......                  ..             .......|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            35789999998764  56677789999999986533221                  00             00112345


Q ss_pred             CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578          138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD  217 (440)
Q Consensus       138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (440)
                      .-.|.++.++.|...++++..    ..+.+|..+............+.          ....     ........-|+|.
T Consensus       164 tyhiNSIS~NsD~Et~lSADd----LRINLWnlei~d~sFnIVDIKP~----------nmEe-----LteVITsaEFhp~  224 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSADD----LRINLWNLEIIDQSFNIVDIKPA----------NMEE-----LTEVITSAEFHPH  224 (433)
T ss_pred             eeEeeeeeecCccceEeeccc----eeeeeccccccCCceeEEEcccc----------CHHH-----HHHHHhhhccCHh
Confidence            567889999999998887753    46777766544222111110000          0000     0000111223444


Q ss_pred             CCeEEEEeeCCceEEEEeCCCCcee----eeeeC------------CCCcccEEEecCCCCeEEEEecCCCEEEEEeEec
Q 013578          218 GSTIIASCSEGTDISIWHGKTGKLL----GNVDT------------NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS  281 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~------------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  281 (440)
                      .-.+++-.+..|+|++-|++....-    ..+..            --..|..+.|+++|+++++-+. -+|++||+...
T Consensus       225 ~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme  303 (433)
T KOG1354|consen  225 HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME  303 (433)
T ss_pred             HccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc
Confidence            4447777788899999999853221    11111            1234677999999999987643 57999999654


Q ss_pred             CCCceeeeeeeeeeeccc------------cce---EEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q 013578          282 KDGLVKAVTSVMQLKGHK------------SAV---TWLCFAPNSEQIITASKDGTLRVWNINVR  331 (440)
Q Consensus       282 ~~~~~~~~~~~~~~~~h~------------~~v---~~~~~~p~~~~l~s~~~dg~i~iwd~~~~  331 (440)
                      ..       ++....-|.            +.|   ..++|+-++.+++||+....++++++..+
T Consensus       304 ~~-------pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  304 AK-------PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CC-------cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            31       333333332            223   35789888899999999999999996544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=1.3e-08  Score=91.36  Aligned_cols=235  Identities=15%  Similarity=0.192  Sum_probs=156.3

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      -++|+||.+.|.-+.|+.+.+.|-|...+|.|.||-+-.++--   .-.......+-|.+++|..+|..+..+-.|    
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~---EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD----  136 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC---EEMINNRNKSVVVSMSWNLDGTKICIVYED----  136 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHH---HHHhhCcCccEEEEEEEcCCCcEEEEEEcc----
Confidence            3679999999999999999999999999999999998765421   111223344678999999999988877554    


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                                                                            |  -++.|+-|| =++|.-+    +.
T Consensus       137 ------------------------------------------------------G--avIVGsvdG-NRIwgKe----Lk  155 (1189)
T KOG2041|consen  137 ------------------------------------------------------G--AVIVGSVDG-NRIWGKE----LK  155 (1189)
T ss_pred             ------------------------------------------------------C--CEEEEeecc-ceecchh----cc
Confidence                                                                  2  467788888 6788522    11


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee----eeeeeccccceEEEEEc--------CCC
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS----VMQLKGHKSAVTWLCFA--------PNS  311 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~~--------p~~  311 (440)
                      .     .....+.|++|.+.++.+-.+|.+++||....-.... ...+    ...+......|..+.|.        |+.
T Consensus       156 g-----~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl-~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr  229 (1189)
T KOG2041|consen  156 G-----QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKL-EKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR  229 (1189)
T ss_pred             h-----heccceeecccHHHHHhhhcCCcEEEecccccHHHhh-hhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence            1     1123678999999999999999999999643211000 0001    11111112235555553        477


Q ss_pred             CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C---------CEEEEE
Q 013578          312 EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G---------STLQWL  381 (440)
Q Consensus       312 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~---------~~i~i~  381 (440)
                      ..|+.+-.+|.+.|-.-.+..       .      |.....  ...+....|+++|.+||+++ +         +.|.+|
T Consensus       230 P~lavcy~nGr~QiMR~eND~-------~------Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy  294 (1189)
T KOG2041|consen  230 PRLAVCYANGRMQIMRSENDP-------E------PVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY  294 (1189)
T ss_pred             CEEEEEEcCceehhhhhcCCC-------C------CeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence            889999999998876543211       0      111111  14467899999999999853 1         355555


Q ss_pred             EcCCccchhhhhccccCCeEEEEecCCC
Q 013578          382 SVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      . .-|+.+..+ +.....|++++|-..+
T Consensus       295 s-p~G~i~gtl-kvpg~~It~lsWEg~g  320 (1189)
T KOG2041|consen  295 S-PYGHIVGTL-KVPGSCITGLSWEGTG  320 (1189)
T ss_pred             c-cchhheEEE-ecCCceeeeeEEcCCc
Confidence            4 446677777 4667789999998887

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.00  E-value=1.8e-06  Score=77.74  Aligned_cols=267  Identities=12%  Similarity=0.129  Sum_probs=142.5

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC-ceEEEccCCCeEEEEeecCCcceEEeecccccccccccc
Q 013578          102 DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP-TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK  180 (440)
Q Consensus       102 dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v-~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (440)
                      .+..++.++.+|.|..+|..+++..    ......  ..+ ....  .++..+++++.+   ..++.++....       
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~----W~~~~~--~~~~~~p~--v~~~~v~v~~~~---g~l~ald~~tG-------  125 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRL----WRVDLD--ERLSGGVG--ADGGLVFVGTEK---GEVIALDAEDG-------  125 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEe----eeecCC--CCcccceE--EcCCEEEEEcCC---CEEEEEECCCC-------
Confidence            3668888888999999998877532    111111  111 1122  245566665544   24444443322       


Q ss_pred             ccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcc-----cEE
Q 013578          181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMA  255 (440)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~  255 (440)
                              ...|.......   .   .. . .. . .+. .++.++.++.|..||.++|+.+..+.......     ...
T Consensus       126 --------~~~W~~~~~~~---~---~~-~-p~-v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp  186 (377)
T TIGR03300       126 --------KELWRAKLSSE---V---LS-P-PL-V-ANG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASP  186 (377)
T ss_pred             --------cEeeeeccCce---e---ec-C-CE-E-ECC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCC
Confidence                    12333221110   0   00 0 00 1 123 56667788999999999999877665432211     111


Q ss_pred             EecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee-eeccc--cceEEEEEcC--CCCEEEEEeCCCcEEEEecCc
Q 013578          256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ-LKGHK--SAVTWLCFAP--NSEQIITASKDGTLRVWNINV  330 (440)
Q Consensus       256 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~h~--~~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~  330 (440)
                      ..  .+..++.+..+|.+..+|..+++.    .+..... ..+..  ..+..+.-+|  .+..++.++.+|.+..||.++
T Consensus       187 ~~--~~~~v~~~~~~g~v~ald~~tG~~----~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t  260 (377)
T TIGR03300       187 VI--ADGGVLVGFAGGKLVALDLQTGQP----LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS  260 (377)
T ss_pred             EE--ECCEEEEECCCCEEEEEEccCCCE----eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence            11  134677888889999999876651    1110000 00000  0000111111  345788888899999999987


Q ss_pred             cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCC
Q 013578          331 RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTI  410 (440)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~  410 (440)
                      ++.+.....            ..    ...... .++.+++...+|.++.+|..+|+.+.................  + 
T Consensus       261 G~~~W~~~~------------~~----~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~--g-  320 (377)
T TIGR03300       261 GRVLWKRDA------------SS----YQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV--G-  320 (377)
T ss_pred             CcEEEeecc------------CC----ccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE--C-
Confidence            754322110            00    011111 134444455689999999999987765421111122222222  2 


Q ss_pred             CCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          411 PMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       411 ~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                             ..|++++.||.|.+++..+++
T Consensus       321 -------~~l~~~~~~G~l~~~d~~tG~  341 (377)
T TIGR03300       321 -------GYLVVGDFEGYLHWLSREDGS  341 (377)
T ss_pred             -------CEEEEEeCCCEEEEEECCCCC
Confidence                   478889999999999998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.00  E-value=2.4e-07  Score=76.87  Aligned_cols=220  Identities=20%  Similarity=0.283  Sum_probs=141.5

Q ss_pred             CccccccccccCcceeEEEEccCCCEEEEeeC-----CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEE
Q 013578           80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACA-----DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIV  154 (440)
Q Consensus        80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~-----dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~  154 (440)
                      ++.+-+.|.||.      .||+||++|+|.-.     .|.|-|||....    ...+.....++-....+.+.||++.|+
T Consensus        45 ~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~----~~ri~E~~s~GIGPHel~l~pDG~tLv  114 (305)
T PF07433_consen   45 WAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARG----YRRIGEFPSHGIGPHELLLMPDGETLV  114 (305)
T ss_pred             cCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCC----cEEEeEecCCCcChhhEEEcCCCCEEE
Confidence            344456788885      89999999998743     488999999832    234555566677788999999999988


Q ss_pred             EEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC-CCeEEEEeeCCceEEE
Q 013578          155 VATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD-GSTIIASCSEGTDISI  233 (440)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~v  233 (440)
                      ++-...     ..                                               .|+ |+..|-..+++..+.+
T Consensus       115 VANGGI-----~T-----------------------------------------------hpd~GR~kLNl~tM~psL~~  142 (305)
T PF07433_consen  115 VANGGI-----ET-----------------------------------------------HPDSGRAKLNLDTMQPSLVY  142 (305)
T ss_pred             EEcCCC-----cc-----------------------------------------------CcccCceecChhhcCCceEE
Confidence            875330     00                                               122 3334555666777888


Q ss_pred             EeCCCCceeeeee----CCCCcccEEEecCCCCeEEEEecCCC-------EEEEEeEecCCCceeeee-eeeeeeccccc
Q 013578          234 WHGKTGKLLGNVD----TNQLKNNMAAISPNGRFLAAAAFTAD-------VKVWEIVYSKDGLVKAVT-SVMQLKGHKSA  301 (440)
Q Consensus       234 wd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~-~~~~~~~h~~~  301 (440)
                      .|..+|+.+.+..    .|...+..++++++|..++..-..|.       +-+++.  +..  ..... .........+.
T Consensus       143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~--~~~~~~p~~~~~~l~~Y  218 (305)
T PF07433_consen  143 LDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGA--LRLLPAPEEQWRRLNGY  218 (305)
T ss_pred             EecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCc--ceeccCChHHHHhhCCc
Confidence            8889998877643    36778999999999987776654443       222321  110  00000 01112234567


Q ss_pred             eEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEE
Q 013578          302 VTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW  380 (440)
Q Consensus       302 v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i  380 (440)
                      |-+|++++++.+++..| .-+.+.+||..++..+....                ...+..++..+++ +++++..|.+..
T Consensus       219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----------------l~D~cGva~~~~~-f~~ssG~G~~~~  281 (305)
T PF07433_consen  219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----------------LPDACGVAPTDDG-FLVSSGQGQLIR  281 (305)
T ss_pred             eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----------------cCceeeeeecCCc-eEEeCCCccEEE
Confidence            89999999998876555 67789999999876542211                1224456666666 666655555444


Q ss_pred             EE
Q 013578          381 LS  382 (440)
Q Consensus       381 ~d  382 (440)
                      ..
T Consensus       282 ~~  283 (305)
T PF07433_consen  282 LS  283 (305)
T ss_pred             cc
Confidence            33

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=8.5e-08  Score=87.03  Aligned_cols=267  Identities=11%  Similarity=0.101  Sum_probs=176.9

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      |...-.++.|+|.| +||.|+.. .|.|-|..+.+     .++....|...|+.+.|.|-.......             
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q-----~iqsie~h~s~V~~VrWap~~~p~~ll-------------   73 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQ-----LIQSIELHQSAVTSVRWAPAPSPRDLL-------------   73 (1062)
T ss_pred             CcccccccccCccc-eEEEecCc-eEEEEehhhhh-----hhhccccCccceeEEEeccCCCchhcc-------------
Confidence            34446788999877 78888755 57777765543     445556677889999999864321111             


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC-CCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD-GSTIIASCSEGTDISIWHGKTGKLLGNVDTN  248 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  248 (440)
                                                                   +|. ...+++++...|.|.+||...+..+..+..+
T Consensus        74 ---------------------------------------------S~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~  108 (1062)
T KOG1912|consen   74 ---------------------------------------------SPSSSQLLIASADISGRIILVDFVLASVINWLSHS  108 (1062)
T ss_pred             ---------------------------------------------CccccceeEEeccccCcEEEEEehhhhhhhhhcCC
Confidence                                                         111 2237888888999999999999888889989


Q ss_pred             CCcccEEEecC---CC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCcE
Q 013578          249 QLKNNMAAISP---NG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTL  323 (440)
Q Consensus       249 ~~~v~~~~~s~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i  323 (440)
                      ..++..++|-+   +. .+|++-.....|.+|+..++.        .............|+.+.| |.+.++.-+..|.+
T Consensus       109 ~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~--------k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v  180 (1062)
T KOG1912|consen  109 NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE--------KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV  180 (1062)
T ss_pred             CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc--------eeeccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence            99999998865   33 567777778899999988776        3444443445567799998 66777777777777


Q ss_pred             EEEecCccccccCCCCccccccc---------------cccCCCCCe---eeeeeEEeCCCCC-EEEEecCCEEEEEEcC
Q 013578          324 RVWNINVRYHLDEDPKTLKVLPI---------------PLLDSNGAT---LQYDRLSLSSDGK-ILAATHGSTLQWLSVE  384 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~---~~v~~~~~s~~g~-~l~~~~~~~i~i~d~~  384 (440)
                      .+-+.-.........+......-               .........   .-...++|+|.-+ .+.......+.++|++
T Consensus       181 l~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle  260 (1062)
T KOG1912|consen  181 LSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLE  260 (1062)
T ss_pred             EEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcch
Confidence            77765432221111111110000               000000000   0122467888755 5556678999999999


Q ss_pred             CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       385 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      -..++..+. -..+.+.-+.|-|+.     .+ ..|++.-.||.+.+|....
T Consensus       261 ~~~~l~vvp-ier~~akfv~vlP~~-----~r-d~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  261 YECCLAVVP-IERGGAKFVDVLPDP-----RR-DALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhceeEEEE-eccCCcceeEeccCC-----Cc-ceEEEEecCCeEEEEEeec
Confidence            888887763 456667778888885     22 6899999999999997654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.99  E-value=1e-09  Score=100.58  Aligned_cols=257  Identities=15%  Similarity=0.169  Sum_probs=160.5

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ..++|..|+..-+|++|+-+.++|+.|+..|.|+++++.++..+     .....|+..|+.+.-+-+|..+++.+.-.. 
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-----~s~ncH~SavT~vePs~dgs~~Ltsss~S~- 1166 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-----ESVNCHQSAVTLVEPSVDGSTQLTSSSSSS- 1166 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-----ccccccccccccccccCCcceeeeeccccC-
Confidence            56788899999999999999999999999999999999988643     455678899999999999998887764321 


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ....+|+.......                    .|      ......++-|+.... .-+.|+......+||++++..+
T Consensus      1167 PlsaLW~~~s~~~~--------------------~H------sf~ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGP--------------------RH------SFDEDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             chHHHhccccccCc--------------------cc------cccccceeehhhhHH-HHHhcccccceEEEecccCcHH
Confidence            11122332221000                    00      000011111122222 2223333345899999999877


Q ss_pred             eeeeC----CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578          243 GNVDT----NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       243 ~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                      .++-.    .+..-++..|+|+..+++   .||  .+||++...        .++.+......+ .=.|+|.|..++..+
T Consensus      1220 ~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~--------aIh~FD~ft~~~-~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPE--------AIHRFDQFTDYG-GGGFHPSGNEVIINS 1285 (1516)
T ss_pred             HHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHH--------HHhhhhhheecc-cccccCCCceEEeec
Confidence            66321    223346789999998876   455  579997664        455554433222 235999999988877


Q ss_pred             CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec---C---------------CEEEE
Q 013578          319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH---G---------------STLQW  380 (440)
Q Consensus       319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~---------------~~i~i  380 (440)
                      .     |||+++-+.+...+..-                -..+.|+..|..+.+.-   |               ...+-
T Consensus      1286 E-----IwD~RTF~lLh~VP~Ld----------------qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRT 1344 (1516)
T KOG1832|consen 1286 E-----IWDMRTFKLLHSVPSLD----------------QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRT 1344 (1516)
T ss_pred             h-----hhhhHHHHHHhcCcccc----------------ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhcc
Confidence            5     89999876654333221                23588888888765532   0               23344


Q ss_pred             EEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          381 LSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       381 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      +|...-..+.++.  -..+|.+++-.|..
T Consensus      1345 f~a~dYs~iaTi~--v~R~~~Dlct~~~D 1371 (1516)
T KOG1832|consen 1345 FDAIDYSDIATIP--VDRCLLDLCTEPTD 1371 (1516)
T ss_pred             ccccccccceeee--cccchhhhhcCCcc
Confidence            4544455555543  34456666666654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.98  E-value=2e-08  Score=80.41  Aligned_cols=149  Identities=11%  Similarity=0.129  Sum_probs=95.2

Q ss_pred             EEEEeeCCceEEEEeCC-CCceeee-eeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578          221 IIASCSEGTDISIWHGK-TGKLLGN-VDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                      ++++|++|+.+..||++ .++.+.. .+.|...|.++.-+| .+.++++|+.|-.|++||.+.-..       ++..-. 
T Consensus       180 lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k-------Pl~~~~-  251 (339)
T KOG0280|consen  180 LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK-------PLFKAK-  251 (339)
T ss_pred             eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC-------ccccCc-
Confidence            89999999999999998 4444433 456777788887765 688999999999999999985441       232222 


Q ss_pred             cccceEEEEEcCCC--CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-
Q 013578          298 HKSAVTWLCFAPNS--EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-  374 (440)
Q Consensus       298 h~~~v~~~~~~p~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-  374 (440)
                      -.+.|+.+.++|.-  ..|+++-.+ -.+|-+++....-         +.........|..-+..-.|.....+||+++ 
T Consensus       252 v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e---------~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF  321 (339)
T KOG0280|consen  252 VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLE---------FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSF  321 (339)
T ss_pred             cccceEEEEecchhhhHHHHHHHhc-CceEEEecccccc---------hheeeeccccccceeeccccccccceeeeeec
Confidence            34789999999943  334444444 4677776643211         1122223334444344444533345788754 


Q ss_pred             -CCEEE-EEEcCCcc
Q 013578          375 -GSTLQ-WLSVETGK  387 (440)
Q Consensus       375 -~~~i~-i~d~~~~~  387 (440)
                       |+.++ +|-..+++
T Consensus       322 YDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  322 YDKKIRQLWLHITGE  336 (339)
T ss_pred             cccceeeeeeeccCC
Confidence             67654 77655554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.98  E-value=2.8e-06  Score=71.39  Aligned_cols=168  Identities=21%  Similarity=0.288  Sum_probs=98.1

Q ss_pred             EEEeeCCceEEEEeCCCCceeeeeeC-----CCCcccEEEecCCCCeEEEEecCCC------EEEEEeEecCCCceeeee
Q 013578          222 IASCSEGTDISIWHGKTGKLLGNVDT-----NQLKNNMAAISPNGRFLAAAAFTAD------VKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~------i~i~d~~~~~~~~~~~~~  290 (440)
                      ++.+..++ +.++|..+++.......     .....+.+++.++|++.++......      =.+|.+....        
T Consensus        54 l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~--------  124 (246)
T PF08450_consen   54 LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG--------  124 (246)
T ss_dssp             EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS--------
T ss_pred             EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC--------
Confidence            44444444 56668887754433322     3345678999999997766554321      2344443321        


Q ss_pred             eeeeeeccccceEEEEEcCCCCEEE-EEeCCCcEEEEecCcccc-ccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNINVRYH-LDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK  368 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~l~-s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  368 (440)
                      .+..+...-...+.|+|+|+++.|+ +-+..+.|..+++..... +.    ..+.    .............+++..+|+
T Consensus       125 ~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~----~~~~----~~~~~~~~g~pDG~~vD~~G~  196 (246)
T PF08450_consen  125 KVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS----NRRV----FIDFPGGPGYPDGLAVDSDGN  196 (246)
T ss_dssp             EEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE----EEEE----EEE-SSSSCEEEEEEEBTTS-
T ss_pred             eEEEEecCcccccceEECCcchheeecccccceeEEEecccccccee----eeee----EEEcCCCCcCCCcceEcCCCC
Confidence            1222222345578999999998775 556778898888863221 10    0000    011111112345799999999


Q ss_pred             EEEEe-cCCEEEEEEcCCccchhhhhccccCCeEEEEec-CC
Q 013578          369 ILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA-PK  408 (440)
Q Consensus       369 ~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~-~~  408 (440)
                      +.++. ..+.|.+++.. |+.+..+..+ ...+++++|. ++
T Consensus       197 l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~  236 (246)
T PF08450_consen  197 LWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPD  236 (246)
T ss_dssp             EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTT
T ss_pred             EEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCC
Confidence            77664 48999999988 8888777533 4589999994 44

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=7.8e-07  Score=80.07  Aligned_cols=165  Identities=13%  Similarity=0.103  Sum_probs=96.4

Q ss_pred             CCCCCe-EEEEeeC--CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCC--CEEEEEeEecCCCceee
Q 013578          215 TADGST-IIASCSE--GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTA--DVKVWEIVYSKDGLVKA  288 (440)
Q Consensus       215 ~~~~~~-~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~  288 (440)
                      +|||+. .+++...  +..|+++|+.+++...... .........|+|||+.++... .++  .|.++|+..+.      
T Consensus       196 SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~------  268 (419)
T PRK04043        196 ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT------  268 (419)
T ss_pred             CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc------
Confidence            566653 2222222  3569999998886644333 344455678999998776543 343  46666654332      


Q ss_pred             eeeeeeeeccccceEEEEEcCCCCEEEEEe-CCC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578          289 VTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS  365 (440)
Q Consensus       289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  365 (440)
                         ...+..+........|+|||+.|+-.+ ..+  .|.+.|+.++...+        +.   .  .+.    ....|+|
T Consensus       269 ---~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r--------lt---~--~g~----~~~~~SP  328 (419)
T PRK04043        269 ---LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ--------VV---F--HGK----NNSSVST  328 (419)
T ss_pred             ---EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe--------Cc---c--CCC----cCceECC
Confidence               222333333334568999999877655 333  56777776543210        00   0  111    1248999


Q ss_pred             CCCEEEEec-C---------CEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          366 DGKILAATH-G---------STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       366 ~g~~l~~~~-~---------~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      ||++++... .         ..|++.|+.+++..... . . +......|+|||
T Consensus       329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT-~-~-~~~~~p~~SPDG  379 (419)
T PRK04043        329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT-A-N-GVNQFPRFSSDG  379 (419)
T ss_pred             CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC-C-C-CCcCCeEECCCC
Confidence            999887642 1         37888899888653322 1 2 233468899998

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.92  E-value=6.2e-09  Score=58.95  Aligned_cols=37  Identities=32%  Similarity=0.781  Sum_probs=35.5

Q ss_pred             eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      ++..+.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            6788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.92  E-value=6.1e-07  Score=72.26  Aligned_cols=114  Identities=11%  Similarity=0.159  Sum_probs=69.5

Q ss_pred             EEEEeeCCceEEEEeCCC-----CceeeeeeC---CCCcccEEEecCCCCeEEEEecC----C-------CEEEEEeEec
Q 013578          221 IIASCSEGTDISIWHGKT-----GKLLGNVDT---NQLKNNMAAISPNGRFLAAAAFT----A-------DVKVWEIVYS  281 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~-----~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d----g-------~i~i~d~~~~  281 (440)
                      .|+.-..+|.++-|-+..     .+....+..   ....|.++.++|..++|++|+..    +       -+..|.+-.+
T Consensus       111 ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~  190 (282)
T PF15492_consen  111 ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD  190 (282)
T ss_pred             eEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC
Confidence            344455566666655422     222333322   35578999999999999888632    1       2566775322


Q ss_pred             CC---------Cce------eeeeeeee------eeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccc
Q 013578          282 KD---------GLV------KAVTSVMQ------LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHL  334 (440)
Q Consensus       282 ~~---------~~~------~~~~~~~~------~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~  334 (440)
                      ..         ...      .....+..      .......|..|..||||..||+...+|.|.+|++......
T Consensus       191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            10         000      00000111      1123567999999999999999999999999999865443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.91  E-value=4.3e-07  Score=90.91  Aligned_cols=208  Identities=16%  Similarity=0.093  Sum_probs=124.9

Q ss_pred             cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC-C-------------CCcccEEEecCCCCeEEEEec-CCCEEEE
Q 013578          212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT-N-------------QLKNNMAAISPNGRFLAAAAF-TADVKVW  276 (440)
Q Consensus       212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~-------------~~~v~~~~~s~~~~~l~~~~~-dg~i~i~  276 (440)
                      ++..+.+..++++-+.++.|++||.. +..+..+.. .             -.....++++++++.|+++.. ++.|+++
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i  651 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI  651 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence            34455444477777888899999975 544443322 0             123577899999887777654 4678888


Q ss_pred             EeEecCCCceeeeeeeeeeec----------c-------ccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCC
Q 013578          277 EIVYSKDGLVKAVTSVMQLKG----------H-------KSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDP  338 (440)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~~~----------h-------~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  338 (440)
                      |+..+.         +..+.+          .       -.....++++| ++..+++.+.++.|++||..++.......
T Consensus       652 d~~~~~---------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G  722 (1057)
T PLN02919        652 DFVNET---------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG  722 (1057)
T ss_pred             ecCCCE---------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec
Confidence            874432         111110          0       12346899999 56666777788999999987653311000


Q ss_pred             Cc-cccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEcCCccchhh-------------hh-------cc
Q 013578          339 KT-LKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVETGKVLDT-------------AE-------KA  395 (440)
Q Consensus       339 ~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~~~~~~~~~-------------~~-------~~  395 (440)
                      .. ...... .......-.....++++|+|..|.++  .++.|++||+.++.....             +-       ..
T Consensus       723 ~G~~~~~~g-~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~  801 (1057)
T PLN02919        723 DGYERNLNG-SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV  801 (1057)
T ss_pred             CCccccCCC-CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence            00 000000 00000011234569999999855544  368999999987653110             00       00


Q ss_pred             ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          396 HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       396 h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .-.....+++++++        .++++-+.+++|++||..+++
T Consensus       802 ~l~~P~Gvavd~dG--------~LYVADs~N~rIrviD~~tg~  836 (1057)
T PLN02919        802 LLQHPLGVLCAKDG--------QIYVADSYNHKIKKLDPATKR  836 (1057)
T ss_pred             hccCCceeeEeCCC--------cEEEEECCCCEEEEEECCCCe
Confidence            11234688999987        788888889999999987653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.90  E-value=1.3e-06  Score=69.39  Aligned_cols=191  Identities=10%  Similarity=0.016  Sum_probs=125.2

Q ss_pred             EEEEeeCCceEEEEeCCCCcee-eeeeCCCCcccEEEe-cCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          221 IIASCSEGTDISIWHGKTGKLL-GNVDTNQLKNNMAAI-SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      +|+.|+..|...+|...+.+.. +....+...|+-+.- .-..-.+..++.|.+++++++..+..+          ...|
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----------~~~h  155 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----------FAVH  155 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc----------ceee
Confidence            7899999999999999866543 333333333322211 112234667788899999888654411          1123


Q ss_pred             cc--ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578          299 KS--AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G  375 (440)
Q Consensus       299 ~~--~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~  375 (440)
                      ..  .+.+++++++++++++.+....|..|.+......     ..+..   ......   .-.+.+|+.....+|++. |
T Consensus       156 ~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey-----~~~~~---~a~t~D---~gF~~S~s~~~~~FAv~~Qd  224 (344)
T KOG4532|consen  156 NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY-----IENIY---EAPTSD---HGFYNSFSENDLQFAVVFQD  224 (344)
T ss_pred             ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce-----eeeeE---ecccCC---CceeeeeccCcceEEEEecC
Confidence            32  3789999999999999999999999988743221     11111   111111   123688999998888876 9


Q ss_pred             CEEEEEEcCCccchhhh----hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          376 STLQWLSVETGKVLDTA----EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~----~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      |.+.|||++....+...    ...|.+.+..+.|++.|+      ..+|+-.-.=+.+.|-|+++++
T Consensus       225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~------lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL------LDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc------ceEEEEecCcceEEEEEcccCc
Confidence            99999999876543222    245889999999998652      1355554456778888887764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.88  E-value=2.8e-07  Score=79.67  Aligned_cols=253  Identities=15%  Similarity=0.182  Sum_probs=158.8

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      -.-++..++|||.|.+|++....| |.+|.-....    ++.+..  | ..|..+.|+|++++|.+-......       
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~----~l~~~~--~-~~V~~~~fSP~~kYL~tw~~~pi~-------   95 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKA----KLVRFR--H-PDVKYLDFSPNEKYLVTWSREPII-------   95 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchh----heeeee--c-CCceecccCcccceeeeeccCCcc-------
Confidence            456788999999999999887665 8999876554    122221  2 678999999999998876543100       


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ  249 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  249 (440)
                                                                   .|+..  ..--..+..+.+||+.++..+..+....
T Consensus        96 ---------------------------------------------~pe~e--~sp~~~~n~~~vwd~~sg~iv~sf~~~~  128 (561)
T COG5354          96 ---------------------------------------------EPEIE--ISPFTSKNNVFVWDIASGMIVFSFNGIS  128 (561)
T ss_pred             ---------------------------------------------Chhhc--cCCccccCceeEEeccCceeEeeccccC
Confidence                                                         00000  0001123369999999999998887655


Q ss_pred             Cc--cc-EEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC--EEEE-----EeC
Q 013578          250 LK--NN-MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE--QIIT-----ASK  319 (440)
Q Consensus       250 ~~--v~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~s-----~~~  319 (440)
                      .+  .. -+.|+-+.+++|-. ....++|+++ +..    ........++  ...|....|+|.++  .||.     .+.
T Consensus       129 q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n----~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~k  200 (561)
T COG5354         129 QPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN----IEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNK  200 (561)
T ss_pred             Ccccccceeeeeecchhhhhh-ccCeEEEEec-CCc----cccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCC
Confidence            44  33 67889888877655 3457899997 222    0011122222  25688889999643  3443     356


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe------------cCCEEEEEEcCCcc
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT------------HGSTLQWLSVETGK  387 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~------------~~~~i~i~d~~~~~  387 (440)
                      ++++++|.+..+..+..     .    .+.     ...=..+.|.+.|.+|.+-            ...+++++++....
T Consensus       201 pa~~~i~sIp~~s~l~t-----k----~lf-----k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~  266 (561)
T COG5354         201 PAMVRILSIPKNSVLVT-----K----NLF-----KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS  266 (561)
T ss_pred             CcEEEEEEccCCCeeee-----e----eeE-----eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence            78899998874332211     0    001     1112258899999977651            13678999988444


Q ss_pred             chhhhhccccCCeEEEEecCCCCCCCCCcceEEEE--eeCCCeEEEEeCCC
Q 013578          388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT--SSVDKKVKLWLAPS  436 (440)
Q Consensus       388 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t--~~~Dg~i~vw~~~~  436 (440)
                      +....  .-.++|.+.+|.|.+        +.+++  |-.+-.+.+++++.
T Consensus       267 i~V~~--~~~~pVhdf~W~p~S--------~~F~vi~g~~pa~~s~~~lr~  307 (561)
T COG5354         267 IPVEK--DLKDPVHDFTWEPLS--------SRFAVISGYMPASVSVFDLRG  307 (561)
T ss_pred             cceec--cccccceeeeecccC--------CceeEEecccccceeeccccc
Confidence            43332  467899999999997        44443  34566677766653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=3.2e-08  Score=81.08  Aligned_cols=168  Identities=14%  Similarity=0.202  Sum_probs=114.8

Q ss_pred             EEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce
Q 013578          223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV  302 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v  302 (440)
                      ++.+.+..|-+-|+++|... .+. ..+.|.++.|...+++++.|..+|.|..+|++....+...   +...+. |.+.|
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~---~a~rly-h~Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW---CAQRLY-HDSSV  301 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc---ceEEEE-cCcch
Confidence            45555666888998887543 333 4667889999999999999999999999999987544332   333333 88999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeee--eeeEEeCCC-CCEEEEecCCEE
Q 013578          303 TWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ--YDRLSLSSD-GKILAATHGSTL  378 (440)
Q Consensus       303 ~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~-g~~l~~~~~~~i  378 (440)
                      +++..-. ++.+|.+.+.+|+|++||++..++-.    .+..+       .+|...  -.-+...+. |-++++|+|-..
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~----~V~qY-------eGHvN~~a~l~~~v~~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK----SVMQY-------EGHVNLSAYLPAHVKEEEGSIFSVGDDCYT  370 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhccc----ceeee-------ecccccccccccccccccceEEEccCeeEE
Confidence            9988776 78889999999999999999665411    01111       111111  111223343 445556778899


Q ss_pred             EEEEcCCccchhhhhcc---ccCCeEEEEecC
Q 013578          379 QWLSVETGKVLDTAEKA---HEGEITCMAWAP  407 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~~---h~~~v~~v~~~~  407 (440)
                      +||.+.+|.++.++...   .+..+.+++|..
T Consensus       371 RiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  371 RIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             EEEecccCceeeccCCCCccccccccceehhc
Confidence            99999999998887522   223466677654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1.9e-06  Score=75.50  Aligned_cols=268  Identities=13%  Similarity=0.126  Sum_probs=141.9

Q ss_pred             cCcceeEEEEccCCCEEEEeeC-----------CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578           90 HGDSVTGLCFSSDGKCLATACA-----------DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH  158 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~-----------dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  158 (440)
                      |. .|.-+.|||..+||+|-|.           -..++|||+.++.....  ..........-.-..||.|+++++-...
T Consensus       249 Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrs--F~~~~~~~~~WP~frWS~DdKy~Arm~~  325 (698)
T KOG2314|consen  249 HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRS--FPVIKSPYLKWPIFRWSHDDKYFARMTG  325 (698)
T ss_pred             CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcc--eeccCCCccccceEEeccCCceeEEecc
Confidence            44 4889999999999999653           15699999998864311  1111111122234689999999998776


Q ss_pred             cCCcceEEeeccccccccc-------cccccCCCCC----------------CceeecccccccceeEEE-eeccccccc
Q 013578          159 NLSGCSLYMYGEEKAISTN-------EGKQQSKLPG----------------PEIKWEHHKVHDKRAILT-LFGASATYG  214 (440)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~  214 (440)
                      +    .|.+++........       ..+...-.+.                .......+.....+.... ....+.+.+
T Consensus       326 ~----sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhW  401 (698)
T KOG2314|consen  326 N----SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHW  401 (698)
T ss_pred             c----eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEe
Confidence            4    55555544321110       0000000000                001111111111111000 011111222


Q ss_pred             CCCCCeEEEEe----------eCCceEEEEeCCCCce-eeeeeCCCCcccEEEecCCCCeEEEEec---CCCEEEEEeEe
Q 013578          215 TADGSTIIASC----------SEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISPNGRFLAAAAF---TADVKVWEIVY  280 (440)
Q Consensus       215 ~~~~~~~l~s~----------~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~  280 (440)
                      ..+|. +|+.-          +.-..+.|+.++.... +..+. -...+...+|.|.|+.+++-+.   ..++.+|.+..
T Consensus       402 Qk~gd-yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  402 QKSGD-YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             ccCCc-EEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            33444 33221          1111133333332221 12222 2345677899999998887654   45688998864


Q ss_pred             cCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578          281 SKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ  357 (440)
Q Consensus       281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (440)
                      ..    ..+..+..+..  ...+.+.|+|.|++++.+.   ..|.+.++|+....+..             .....| ..
T Consensus       480 ~~----~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~-------------~~~~eh-~~  539 (698)
T KOG2314|consen  480 NI----KKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD-------------TASPEH-FA  539 (698)
T ss_pred             CC----Cchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh-------------ccCccc-cc
Confidence            22    22334444443  4567899999999987654   57889999987422111             001111 12


Q ss_pred             eeeEEeCCCCCEEEEec-------CCEEEEEEcCCc
Q 013578          358 YDRLSLSSDGKILAATH-------GSTLQWLSVETG  386 (440)
Q Consensus       358 v~~~~~s~~g~~l~~~~-------~~~i~i~d~~~~  386 (440)
                      .+.+.|.|.|+|+++++       |..-++|+....
T Consensus       540 at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  540 ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             cccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence            45699999999999864       456778877543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=1.4e-07  Score=85.66  Aligned_cols=219  Identities=15%  Similarity=0.169  Sum_probs=139.3

Q ss_pred             cccccccccCcceeEEEEccCC------------CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDG------------KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN  149 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg------------~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~  149 (440)
                      +.+++++-|...|+.+.|.|-.            -+||++...|.|.+||......     ......+..++..++|.+.
T Consensus        46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-----~~~l~~~~~~~qdl~W~~~  120 (1062)
T KOG1912|consen   46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-----INWLSHSNDSVQDLCWVPA  120 (1062)
T ss_pred             hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh-----hhhhcCCCcchhheeeeec
Confidence            3577888999999999998731            2577888889999999987642     2344566678888888764


Q ss_pred             CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCc
Q 013578          150 ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGT  229 (440)
Q Consensus       150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  229 (440)
                      .                                                                 ++.+.+|+.-....
T Consensus       121 r-----------------------------------------------------------------d~Srd~LlaIh~ss  135 (1062)
T KOG1912|consen  121 R-----------------------------------------------------------------DDSRDVLLAIHGSS  135 (1062)
T ss_pred             c-----------------------------------------------------------------CcchheeEEecCCc
Confidence            2                                                                 12222555555667


Q ss_pred             eEEEEeCCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc--------
Q 013578          230 DISIWHGKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS--------  300 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~--------  300 (440)
                      +|.+|+..+|+....+........|+.+.| |.+.+..-+..|.+.+-+.-......... +..+.-..|.+        
T Consensus       136 ~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg-k~~qI~sd~Sdl~~lere~  214 (1062)
T KOG1912|consen  136 TLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG-KEFQITSDHSDLAHLERET  214 (1062)
T ss_pred             EEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc-eeEEEecCccchhhhhhhh
Confidence            799999999999888877666778899988 56677777778877777653222111100 01111111111        


Q ss_pred             --------c---------eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          301 --------A---------VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       301 --------~---------v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                              .         ...++|+|.-+.++-......+.++|++-..++       ...+++     .  ..+.-+.+
T Consensus       215 at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l-------~vvpie-----r--~~akfv~v  280 (1062)
T KOG1912|consen  215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCL-------AVVPIE-----R--GGAKFVDV  280 (1062)
T ss_pred             hccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhcee-------EEEEec-----c--CCcceeEe
Confidence                    0         123667886665555566778999999844332       111111     1  11224667


Q ss_pred             CCCCC--EEEEec-CCEEEEEEcCC
Q 013578          364 SSDGK--ILAATH-GSTLQWLSVET  385 (440)
Q Consensus       364 s~~g~--~l~~~~-~~~i~i~d~~~  385 (440)
                      -|+++  .|.+.. +|.+.+|-.+.
T Consensus       281 lP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  281 LPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ccCCCcceEEEEecCCeEEEEEeec
Confidence            77655  666654 89999997655

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.85  E-value=1.2e-08  Score=91.91  Aligned_cols=202  Identities=18%  Similarity=0.246  Sum_probs=135.5

Q ss_pred             cccccccCCCCCeEEEEeeCCceEEEEeCCCC-ceeeeee-CCCCcccEEEecCCC--CeEEEEecCCCEEEEEeEecCC
Q 013578          208 GASATYGTADGSTIIASCSEGTDISIWHGKTG-KLLGNVD-TNQLKNNMAAISPNG--RFLAAAAFTADVKVWEIVYSKD  283 (440)
Q Consensus       208 ~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~-~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~  283 (440)
                      +...+...|.|+ -++.++.-| +.+.|+... .+-+.+. ...-.+-.+.|+|..  .+-++.....+-.+|++....+
T Consensus        26 ~~~a~si~p~gr-di~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~  103 (1081)
T KOG0309|consen   26 GFNAVSINPSGR-DIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS  103 (1081)
T ss_pred             cccceeeccccc-hhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence            344455577777 555566655 667776542 2222221 112235566777643  3444445566667899866543


Q ss_pred             CceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          284 GLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       284 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                      ..     ....+.+|...|+.+.|+|+.. .+++++.|-.+..||++.....             ++....-...-..+.
T Consensus       104 ~a-----Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p-------------~ys~~~w~s~asqVk  165 (1081)
T KOG0309|consen  104 NA-----IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP-------------FYSTSSWRSAASQVK  165 (1081)
T ss_pred             cc-----eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc-------------eeeeecccccCceee
Confidence            22     3456789999999999999654 6899999999999999964321             111111122245688


Q ss_pred             eCC-CCCEEEEecCCEEEEEEcCCcc-chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          363 LSS-DGKILAATHGSTLQWLSVETGK-VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       363 ~s~-~g~~l~~~~~~~i~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      |+- ++..+|...++.|++||.+.|. ++..+ ++|...|+.++|...-       ...+.+++.||+|+.|+....
T Consensus       166 wnyk~p~vlasshg~~i~vwd~r~gs~pl~s~-K~~vs~vn~~~fnr~~-------~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  166 WNYKDPNVLASSHGNDIFVWDLRKGSTPLCSL-KGHVSSVNSIDFNRFK-------YSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             ecccCcchhhhccCCceEEEeccCCCcceEEe-cccceeeehHHHhhhh-------hhhhcccCCCCceeeeccccc
Confidence            875 4567777789999999998876 45555 6899999999998653       157899999999999998753

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=1.4e-08  Score=88.36  Aligned_cols=174  Identities=20%  Similarity=0.224  Sum_probs=125.3

Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      +..+.+|+..|+.++--.+.+.+++++.|.+|++|.++...++. ....+..++..|+.+|.++.|-.+-++++++  ||
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~-~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI-GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc-ccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            45567888888888766778889999999999999998766443 2233677889999999999999988888766  78


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC--CCCEEEEe-c-CCEEEEEEcCCccchhhhh----
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS--DGKILAAT-H-GSTLQWLSVETGKVLDTAE----  393 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~-~-~~~i~i~d~~~~~~~~~~~----  393 (440)
                      .|.+||.--+..+.+....      +.   .+.   +..+..-+  +..++.+| + ..+|+++|.+.++-...+.    
T Consensus       805 giHlWDPFigr~Laq~~da------pk---~~a---~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna  872 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDA------PK---EGA---GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA  872 (1034)
T ss_pred             cceeecccccchhHhhhcC------cc---cCC---CceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence            9999997655443221110      00   111   11222222  34445444 3 7899999999887554442    


Q ss_pred             ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          394 KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       394 ~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .+..+.+.+++..+.|        +.++.+=+.|.|-+-|.++|+
T Consensus       873 ~~Pna~~R~iaVa~~G--------N~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  873 PGPNALTRAIAVADKG--------NKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             CCCchheeEEEeccCc--------chhhHHhcCCcEEEEecCCCc
Confidence            2344678999999998        899999999999999998876

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.82  E-value=1.3e-07  Score=87.38  Aligned_cols=178  Identities=12%  Similarity=0.159  Sum_probs=126.4

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      .++-|+-...+..+|+.+.+..+........+.-+  -.+++++.+|...|+|.+-|.++.+        .++++.+|++
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~--------~iht~~aHs~  218 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFE--------TIHTFDAHSG  218 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCc--------eeeeeecccc
Confidence            56667766778889999888877766555444444  4567899999999999999986665        7899999999


Q ss_pred             ceEEEEEcCCCCEEEEEeC---------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC--CCE
Q 013578          301 AVTWLCFAPNSEQIITASK---------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD--GKI  369 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~  369 (440)
                      .|..+..  .|+.|++|+.         |.-|++||++..+.+..       +..+...        .-+.|.|.  .+.
T Consensus       219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-------I~~~~~P--------~flrf~Psl~t~~  281 (1118)
T KOG1275|consen  219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-------IQFPYGP--------QFLRFHPSLTTRL  281 (1118)
T ss_pred             ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC-------cccccCc--------hhhhhcccccceE
Confidence            9988776  6889999874         56689999997654321       1111110        12556665  334


Q ss_pred             EEEecCCEEEEEEcCCcc-chhhhh--ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          370 LAATHGSTLQWLSVETGK-VLDTAE--KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       370 l~~~~~~~i~i~d~~~~~-~~~~~~--~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      .++...|...+.|..+.. ......  ..-...+..+++++++        ..|+.|..+|.|.+|.
T Consensus       282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~--------~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG--------DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC--------ceEEEecccCcEeeec
Confidence            445568888888854332 211111  1233459999999998        8999999999999998

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=9.4e-08  Score=81.22  Aligned_cols=253  Identities=15%  Similarity=0.119  Sum_probs=160.9

Q ss_pred             CCCCCCCCcccCccc-------cccccccCcceeEEEEccCCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCC
Q 013578           69 SHGDKDQNKRHHPLD-------VNTLKGHGDSVTGLCFSSDGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGP  140 (440)
Q Consensus        69 ~~~~~~~~~~~~~~~-------~~~l~~H~~~V~~l~~s~dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~  140 (440)
                      .+++-|+..+.|...       +..+..|-+.|.+++.+-||.++.|.+. |..++++|+++-.....  ++.    ...
T Consensus        24 iqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm--iKL----~~l   97 (558)
T KOG0882|consen   24 IQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM--IKL----VDL   97 (558)
T ss_pred             EeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh--ccc----ccC
Confidence            344556666666442       4567889999999999999999999887 99999999986432110  000    011


Q ss_pred             CceEEEccC-CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578          141 PTAVAFADN-ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS  219 (440)
Q Consensus       141 v~~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (440)
                      ...+.|... |..+                                                                 .
T Consensus        98 Pg~a~wv~skGd~~-----------------------------------------------------------------s  112 (558)
T KOG0882|consen   98 PGFAEWVTSKGDKI-----------------------------------------------------------------S  112 (558)
T ss_pred             CCceEEecCCCCee-----------------------------------------------------------------e
Confidence            111222110 0000                                                                 0


Q ss_pred             eEEEEeeCCceEEEEeCCCCc--eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEec----CC---Cceeeee
Q 013578          220 TIIASCSEGTDISIWHGKTGK--LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS----KD---GLVKAVT  290 (440)
Q Consensus       220 ~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~---~~~~~~~  290 (440)
                      .+.++.-.++.+.++|-....  ....-..|..+|.++.+++-+..+++....|.|.-|.....    ..   ...+...
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT  192 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET  192 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence            033444567788899866443  33444568899999999999999999999999999987521    10   0011111


Q ss_pred             eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccc-------------------cCC
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL-------------------LDS  351 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------------~~~  351 (440)
                      .+..+........++.|+|++..+.+-+.|..|+++++++++..+.............                   .-.
T Consensus       193 dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele  272 (558)
T KOG0882|consen  193 DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE  272 (558)
T ss_pred             hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence            2233334456788999999999999999999999999998876544222111110000                   000


Q ss_pred             CCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhh
Q 013578          352 NGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTA  392 (440)
Q Consensus       352 ~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~  392 (440)
                      ......-+.+.|...|.+|.-|.-=.|++.++.++++.+.+
T Consensus       273 k~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  273 KHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL  313 (558)
T ss_pred             hhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence            01122234678999999999888777888888887665443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.79  E-value=6.7e-08  Score=76.15  Aligned_cols=161  Identities=12%  Similarity=0.053  Sum_probs=99.1

Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-----CCCc
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-----KDGT  322 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-----~dg~  322 (440)
                      +..+-.+-+.+.-++.++++..||.+.+++.+...       ....+...-...-.+..+...++.+.++.     .-+.
T Consensus        88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~-------~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~  160 (319)
T KOG4714|consen   88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDL-------ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN  160 (319)
T ss_pred             cCCCCCcccccccCCceEecCCCceEEEEechHHH-------hhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence            33333344445567789999999999999875421       00111111111111222222344443332     1224


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE-EEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI-LAATH-GSTLQWLSVETGKVLDTAEKAHEGEI  400 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v  400 (440)
                      .+.|+++....+          ......    ...|.+++-+|..+. +++|. ||.+-+||.+.......+.++|..++
T Consensus       161 ~~a~~~~p~~t~----------~~~~~~----~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i  226 (319)
T KOG4714|consen  161 FYANTLDPIKTL----------IPSKKA----LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI  226 (319)
T ss_pred             eeeecccccccc----------cccccc----cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh
Confidence            555665532211          101111    122778888887664 44554 89999999999988888778999999


Q ss_pred             EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +.+-|+|..+       ..|+++++||.+--||..+
T Consensus       227 ~eV~FHpk~p-------~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  227 WEVHFHPKNP-------EHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hheeccCCCc-------hheeEecCCCcEEEEcCCC
Confidence            9999999874       7899999999999999873

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.78  E-value=6.1e-06  Score=74.30  Aligned_cols=175  Identities=13%  Similarity=0.129  Sum_probs=103.4

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCC----cc---cEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQL----KN---NMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----~v---~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                      .++.+..++.+..+|.++|+.+........    .+   ..+.-+|  .+..+++++.+|.++.||..+++        .
T Consensus       192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~--------~  263 (377)
T TIGR03300       192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR--------V  263 (377)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc--------E
Confidence            567777888999999999987654432110    00   0000111  35678888889999999987654        2


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                      +.... .. .......  .+..++.++.||.+..+|..+++.+......           ...  ....... .++.+++
T Consensus       264 ~W~~~-~~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----------~~~--~~ssp~i-~g~~l~~  325 (377)
T TIGR03300       264 LWKRD-AS-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDEL-----------KYR--QLTAPAV-VGGYLVV  325 (377)
T ss_pred             EEeec-cC-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccc-----------cCC--ccccCEE-ECCEEEE
Confidence            22221 11 1112222  4667888889999999999877654321110           000  0111111 1233444


Q ss_pred             EecCCEEEEEEcCCccchhhhhccccCCeE-EEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578          372 ATHGSTLQWLSVETGKVLDTAEKAHEGEIT-CMAWAPKTIPMGNQQVSVLATSSVDKKVKLW  432 (440)
Q Consensus       372 ~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw  432 (440)
                      ...+|.|+++|..+|+.+..+. .+...+. ...+..          ..|+.++.||.|..|
T Consensus       326 ~~~~G~l~~~d~~tG~~~~~~~-~~~~~~~~sp~~~~----------~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       326 GDFEGYLHWLSREDGSFVARLK-TDGSGIASPPVVVG----------DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EeCCCEEEEEECCCCCEEEEEE-cCCCccccCCEEEC----------CEEEEEeCCceEEEe
Confidence            4558999999999999988774 4443332 223333          257888899999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.73  E-value=3.7e-06  Score=70.40  Aligned_cols=190  Identities=14%  Similarity=0.095  Sum_probs=109.0

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-ecc-
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-KGH-  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~h-  298 (440)
                      .+++++.++.|..||..+|+.+..+.... .+.... ...+..+++++.++.++.+|..+++        .+... ... 
T Consensus        38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~--------~~W~~~~~~~  107 (238)
T PF13360_consen   38 RVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGGRVYVGTSDGSLYALDAKTGK--------VLWSIYLTSS  107 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETTEEEEEETTSEEEEEETTTSC--------EEEEEEE-SS
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eecccccccccceeeeEecccCCcc--------eeeeeccccc
Confidence            56666889999999999999988777633 222221 2345667777788888888876665        22221 111 


Q ss_pred             --ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeee-eeEEeCCCCCEEEEecC
Q 013578          299 --KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY-DRLSLSSDGKILAATHG  375 (440)
Q Consensus       299 --~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~  375 (440)
                        ............+..++.+..++.|..+|+++++.+...............    ....+ ..+.+. ++.++++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~v~~~~~~  182 (238)
T PF13360_consen  108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS----SFSDINGSPVIS-DGRVYVSSGD  182 (238)
T ss_dssp             CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE----EETTEEEEEECC-TTEEEEECCT
T ss_pred             cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee----eecccccceEEE-CCEEEEEcCC
Confidence              011122222224778888888999999999988764322111000000000    00001 123333 4555555556


Q ss_pred             CE-EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          376 ST-LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       376 ~~-i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +. +.+ |..+++.+...  . ...+..+. ..++        ..|+.++.|+.+..||+.+++
T Consensus       183 g~~~~~-d~~tg~~~w~~--~-~~~~~~~~-~~~~--------~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  183 GRVVAV-DLATGEKLWSK--P-ISGIYSLP-SVDG--------GTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             SSEEEE-ETTTTEEEEEE--C-SS-ECECE-ECCC--------TEEEEEETTTEEEEEETTTTE
T ss_pred             CeEEEE-ECCCCCEEEEe--c-CCCccCCc-eeeC--------CEEEEEeCCCEEEEEECCCCC
Confidence            64 555 99999966422  2 23333322 2333        467777799999999999986

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=9.2e-08  Score=78.49  Aligned_cols=110  Identities=17%  Similarity=0.240  Sum_probs=83.8

Q ss_pred             EEEEeeCCceEEEEeCCCC-----ceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTG-----KLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      +++.|...|.|..+|++.+     .+...+ .|...++++..-. ++++|.+.+.+|+|.+||++..+.+     ..+.+
T Consensus       266 Lv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~-----~~V~q  339 (425)
T KOG2695|consen  266 LVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK-----KSVMQ  339 (425)
T ss_pred             eeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc-----cceee
Confidence            8889999999999999865     233333 3677899987766 7889999999999999999876521     13777


Q ss_pred             eeccccceEEE--EEcCCCCEEEEEeCCCcEEEEecCccccccC
Q 013578          295 LKGHKSAVTWL--CFAPNSEQIITASKDGTLRVWNINVRYHLDE  336 (440)
Q Consensus       295 ~~~h~~~v~~~--~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~  336 (440)
                      +.||-..-.-+  -..+....+++++.|...|||.++.+..+.+
T Consensus       340 YeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  340 YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             eecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            88886543333  3355667889999999999999997766543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=2.3e-06  Score=78.48  Aligned_cols=144  Identities=17%  Similarity=0.226  Sum_probs=99.1

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC-----CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN-----GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      ++++|+.||.|.|-.+-+.+...++.. ..++.+++++|+     .+.+++|+..| +.++.-+--+.     . ....+
T Consensus        85 y~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-----k-~~v~l  156 (846)
T KOG2066|consen   85 YVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-----K-DSVVL  156 (846)
T ss_pred             eEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-----c-cceee
Confidence            899999999999999888887776665 457899999998     57889999888 77776432221     1 11145


Q ss_pred             eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecC
Q 013578          296 KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG  375 (440)
Q Consensus       296 ~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  375 (440)
                      ....++|.++.|  .|.++|-++.+ -|++||+.++..+...+...        .......--..+.|.++.+ |+.|-.
T Consensus       157 ~~~eG~I~~i~W--~g~lIAWand~-Gv~vyd~~~~~~l~~i~~p~--------~~~R~e~fpphl~W~~~~~-LVIGW~  224 (846)
T KOG2066|consen  157 SEGEGPIHSIKW--RGNLIAWANDD-GVKVYDTPTRQRLTNIPPPS--------QSVRPELFPPHLHWQDEDR-LVIGWG  224 (846)
T ss_pred             ecCccceEEEEe--cCcEEEEecCC-CcEEEeccccceeeccCCCC--------CCCCcccCCCceEecCCCe-EEEecC
Confidence            566789999999  57788877765 58999999876654322221        1111122223577877665 455666


Q ss_pred             CEEEEEEcC
Q 013578          376 STLQWLSVE  384 (440)
Q Consensus       376 ~~i~i~d~~  384 (440)
                      .+|+|..++
T Consensus       225 d~v~i~~I~  233 (846)
T KOG2066|consen  225 DSVKICSIK  233 (846)
T ss_pred             CeEEEEEEe
Confidence            778877776

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.68  E-value=1.2e-05  Score=77.26  Aligned_cols=235  Identities=15%  Similarity=0.177  Sum_probs=132.7

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE  170 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~  170 (440)
                      .+.|.++.|..+++.++.+..+|.|.+-|.++...+      ....-...|.+++|+||++.++..+...  ..+.+-..
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e------ivg~vd~GI~aaswS~Dee~l~liT~~~--tll~mT~~  139 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE------IVGNVDNGISAASWSPDEELLALITGRQ--TLLFMTKD  139 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee------eeeeccCceEEEeecCCCcEEEEEeCCc--EEEEEecc
Confidence            368999999999999999999999999887765432      2223347899999999999999888652  12211111


Q ss_pred             ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc-----ee---
Q 013578          171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-----LL---  242 (440)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~---  242 (440)
                      -..+.......  .           .                  .+.+  ..+..+....=.=+....|+     .+   
T Consensus       140 f~~i~E~~L~~--d-----------~------------------~~~s--k~v~VGwGrkeTqfrgs~gr~~~~~~~~~e  186 (1265)
T KOG1920|consen  140 FEPIAEKPLDA--D-----------D------------------ERKS--KFVNVGWGRKETQFRGSEGRQAARQKIEKE  186 (1265)
T ss_pred             ccchhcccccc--c-----------c------------------cccc--ccceecccccceeeecchhhhccccccccc
Confidence            11100000000  0           0                  0001  12333322211111111110     00   


Q ss_pred             ---eeeeCCCCcccEEEecCCCCeEEEE-----ecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578          243 ---GNVDTNQLKNNMAAISPNGRFLAAA-----AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI  314 (440)
Q Consensus       243 ---~~~~~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  314 (440)
                         ..... ...-+.+.|--||+++|+.     ....+|++||-. +.        .-..-..-.+.=.+++|-|.|..+
T Consensus       187 k~~~~~~~-~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~--------Lns~se~~~~l~~~LsWkPsgs~i  256 (1265)
T KOG1920|consen  187 KALEQIEQ-DDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA--------LNSTSEPVEGLQHSLSWKPSGSLI  256 (1265)
T ss_pred             ccccchhh-ccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch--------hhcccCcccccccceeecCCCCeE
Confidence               10111 1223568999999999984     233789999965 22        111111112233579999999988


Q ss_pred             EEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE---ec-CCEEEEEEcCCcc
Q 013578          315 ITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA---TH-GSTLQWLSVETGK  387 (440)
Q Consensus       315 ~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~---~~-~~~i~i~d~~~~~  387 (440)
                      ++..   .|+.|.++.-+....      ..-.++     .......+..++|+.++.+||+   .. ...|++|-+..-.
T Consensus       257 A~iq~~~sd~~IvffErNGL~h------g~f~l~-----~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  257 AAIQCKTSDSDIVFFERNGLRH------GEFVLP-----FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             eeeeecCCCCcEEEEecCCccc------cccccC-----CcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            8764   466799987653221      000111     1122233788999999999997   33 4559999887643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=3.1e-06  Score=71.25  Aligned_cols=248  Identities=15%  Similarity=0.172  Sum_probs=141.3

Q ss_pred             cccccccCcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ...+.+|...|..++|||..+ ++..++.+..|+|.|+++...     ......+ ..+.+++|.-|..           
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----vssy~a~-~~~wSC~wDlde~-----------  248 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----VSSYIAY-NQIWSCCWDLDER-----------  248 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-----eeheecc-CCceeeeeccCCc-----------
Confidence            345678899999999999776 788999999999999987642     2222222 6777888765432           


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce-
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL-  241 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-  241 (440)
                                                                               .+++.|...|.|.+||++..+- 
T Consensus       249 ---------------------------------------------------------h~IYaGl~nG~VlvyD~R~~~~~  271 (463)
T KOG1645|consen  249 ---------------------------------------------------------HVIYAGLQNGMVLVYDMRQPEGP  271 (463)
T ss_pred             ---------------------------------------------------------ceeEEeccCceEEEEEccCCCch
Confidence                                                                     2788888899999999986542 


Q ss_pred             eeeeeC--CCCcccEEE------ecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE
Q 013578          242 LGNVDT--NQLKNNMAA------ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ  313 (440)
Q Consensus       242 ~~~~~~--~~~~v~~~~------~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  313 (440)
                      +..+..  ...+|..++      ..+.|.+|+....+  +..|.+....+    .+.++..+. ..+...++++++..+.
T Consensus       272 ~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~----~~p~vlele-~pG~cismqy~~~snh  344 (463)
T KOG1645|consen  272 LMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE----CLPCVLELE-PPGICISMQYHGVSNH  344 (463)
T ss_pred             HhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc----CCCcccccC-CCcceeeeeecCccce
Confidence            222211  112232222      22334555554433  45666644331    112222222 2455666777665555


Q ss_pred             EEEEeCC-C----------------cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ec-
Q 013578          314 IITASKD-G----------------TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-TH-  374 (440)
Q Consensus       314 l~s~~~d-g----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~-  374 (440)
                      ++..-.. .                .-.||..+...        ......+...       -..+.-.++..+++. ++ 
T Consensus       345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~--------~Gs~~~kl~t-------~~ai~~~~~nn~iv~~gd~  409 (463)
T KOG1645|consen  345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTY--------FGSKQTKLST-------TQAIRAVEDNNYIVVVGDS  409 (463)
T ss_pred             EEEEecCCCCCccceeeeeeeccccCceeeeecccc--------cCCccccccc-------ccceeccccccEEEEecCC
Confidence            4433221 0                01122221100        0000000000       011222455666665 33 


Q ss_pred             CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      .+.+.+||..+++.++.+.  -..+|.+++....+     + ..+|++-. |..++||+.++
T Consensus       410 tn~lil~D~~s~evvQ~l~--~~epv~Dicp~~~n-----~-~syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  410 TNELILQDPHSFEVVQTLA--LSEPVLDICPNDTN-----G-SSYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             cceeEEeccchhheeeecc--cCcceeecceeecC-----C-cchhhhee-cceEEEEecCC
Confidence            4899999999999999885  55788888766542     1 15777665 66799987654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=7e-06  Score=75.98  Aligned_cols=203  Identities=11%  Similarity=0.113  Sum_probs=132.1

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc-ccEEEecCCCCeEEEEecCCC-----EEEEEeEecCCCceee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK-NNMAAISPNGRFLAAAAFTAD-----VKVWEIVYSKDGLVKA  288 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~  288 (440)
                      ++.+. .++.|+.+|.|.+++-. .+.++.++.+... +..+....+.++|++.+.|+.     ++||++.....+....
T Consensus        32 ~s~~~-~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   32 SSSTG-SVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             cCCCc-eEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            34444 89999999999888743 4455777776666 555555555578888777655     8999997664333111


Q ss_pred             eeeeeeeec-----cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          289 VTSVMQLKG-----HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       289 ~~~~~~~~~-----h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                      ....+.+.+     ...++.+++.+.+-..+|+|-.||.|..+.=.-.+   ..  ..     ...-......+|+.+++
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R---Dr--gs-----r~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR---DR--GS-----RQDYSHRGKEPITGLAL  179 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh---cc--cc-----ceeeeccCCCCceeeEE
Confidence            111122222     24678899999998899999999999988532111   00  00     11112233456999999


Q ss_pred             CCCCCE-EEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          364 SSDGKI-LAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       364 s~~g~~-l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ..+++. +.+..-..|.+|.+....+.......|...++|..|++..        ..+++++ +..+.+|+.+..+
T Consensus       180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t--------~qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT--------YQFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC--------ccEEEec-CceEEEEcCCCcc
Confidence            999986 4556678889998884333333235788899999999875        4466665 3458888876543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.61  E-value=3e-05  Score=65.49  Aligned_cols=191  Identities=10%  Similarity=0.045  Sum_probs=106.6

Q ss_pred             CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE-EEE
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT-WLC  306 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~  306 (440)
                      ...|.|.|+..++.+.++.....   ...+-...+-|.+.+.||.+.-..+....  ... ......+.....++. .-+
T Consensus       117 a~SVtVVDl~~~kvv~ei~~PGC---~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G--k~~-~~~t~~F~~~~dp~f~~~~  190 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVVGEIDTPGC---WLIYPSGNRGFSMLCGDGSLLTVTLDADG--KEA-QKSTKVFDPDDDPLFEHPA  190 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEGTSE---EEEEEEETTEEEEEETTSCEEEEEETSTS--SEE-EEEEEESSTTTS-B-S--E
T ss_pred             CCeEEEEECCCCceeeeecCCCE---EEEEecCCCceEEEecCCceEEEEECCCC--CEe-EeeccccCCCCcccccccc
Confidence            34589999999998888875432   12221123457788889999888876433  211 111123333333332 334


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccccc---ccCCCCCeeeeeeEEeCCCCCEEEE----ecC----
Q 013578          307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIP---LLDSNGATLQYDRLSLSSDGKILAA----THG----  375 (440)
Q Consensus       307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~----~~~----  375 (440)
                      +...+..++-.+.+|.|+--|+......     ....+...   .....=......-+++++....|.+    +.+    
T Consensus       191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~-----~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK  265 (342)
T PF06433_consen  191 YSRDGGRLYFVSYEGNVYSADLSGDSAK-----FGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK  265 (342)
T ss_dssp             EETTTTEEEEEBTTSEEEEEEETTSSEE-----EEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred             eECCCCeEEEEecCCEEEEEeccCCccc-----ccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence            4445555665778888888887643211     11111100   0000111222345788765543333    211    


Q ss_pred             ---CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEE-eeCCCeEEEEeCCCCC
Q 013578          376 ---STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT-SSVDKKVKLWLAPSLE  438 (440)
Q Consensus       376 ---~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t-~~~Dg~i~vw~~~~~~  438 (440)
                         ..|.+||+.+++.+.++.-  ...+.+|..+.+..       .+|++ ...++.+.+||..+++
T Consensus       266 dpgteVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~-------P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  266 DPGTEVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDK-------PLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             S-EEEEEEEETTTTEEEEEEEE--EEEESEEEEESSSS--------EEEEEETTTTEEEEEETTT--
T ss_pred             CCceEEEEEECCCCeEEEEEeC--CCccceEEEccCCC-------cEEEEEcCCCCeEEEEeCcCCc
Confidence               3688899999999998853  34588999998752       45654 4568999999999886

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.61  E-value=2.4e-05  Score=75.39  Aligned_cols=191  Identities=18%  Similarity=0.184  Sum_probs=115.4

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEec----CC--------Cceee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS----KD--------GLVKA  288 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~--------~~~~~  288 (440)
                      .++.+..+|.|.+-|.++.... ....-...|.+++|+||+++++..+..+++.+.+-...    +.        +....
T Consensus        82 ~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~  160 (1265)
T KOG1920|consen   82 SICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVN  160 (1265)
T ss_pred             eEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccce
Confidence            4555556667777777765432 22223557899999999999999998888877553110    00        00000


Q ss_pred             ---eeeeeeeec---------------------cccceEEEEEcCCCCEEEEEe----CC-CcEEEEecCccccccCCCC
Q 013578          289 ---VTSVMQLKG---------------------HKSAVTWLCFAPNSEQIITAS----KD-GTLRVWNINVRYHLDEDPK  339 (440)
Q Consensus       289 ---~~~~~~~~~---------------------h~~~v~~~~~~p~~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~  339 (440)
                         .+....+.|                     -.+.=++|.|--||.++|+..    .+ ..|++||-+ +... ... 
T Consensus       161 VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Ln-s~s-  237 (1265)
T KOG1920|consen  161 VGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALN-STS-  237 (1265)
T ss_pred             ecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhh-ccc-
Confidence               000011111                     111224689999999998743    23 789999987 2111 000 


Q ss_pred             ccccccccccCCCCCeeeeeeEEeCCCCCEEEE----ecCCEEEEEEcCCc---cchhhhhccccCCeEEEEecCCCCCC
Q 013578          340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA----THGSTLQWLSVETG---KVLDTAEKAHEGEITCMAWAPKTIPM  412 (440)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~----~~~~~i~i~d~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~  412 (440)
                                  ......-.+++|-|.|.++|+    ++++.|.+|....-   +..... ......|..++|+.++   
T Consensus       238 ------------e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~Wns~s---  301 (1265)
T KOG1920|consen  238 ------------EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELAWNSNS---  301 (1265)
T ss_pred             ------------CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheeeecCCC---
Confidence                        001111236999999999998    34678999986432   222222 1233459999999998   


Q ss_pred             CCCcceEEEE---eeCCCeEEEEeCCC
Q 013578          413 GNQQVSVLAT---SSVDKKVKLWLAPS  436 (440)
Q Consensus       413 ~~~~~~~l~t---~~~Dg~i~vw~~~~  436 (440)
                           ..|+.   ......|++|.+.+
T Consensus       302 -----diLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  302 -----DILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             -----CceeeeecccccceEEEEEecC
Confidence                 78887   55566699998765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.55  E-value=2.8e-06  Score=69.07  Aligned_cols=172  Identities=12%  Similarity=0.199  Sum_probs=104.4

Q ss_pred             cccEEEecCCC--CeEEEEecCCCEEEEEeEecC-----------------CCce-----------------eeeeeee-
Q 013578          251 KNNMAAISPNG--RFLAAAAFTADVKVWEIVYSK-----------------DGLV-----------------KAVTSVM-  293 (440)
Q Consensus       251 ~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~-----------------~~~~-----------------~~~~~~~-  293 (440)
                      .|..+.|-.++  ..++..+.|.+|++|.+....                 .+..                 ....+.. 
T Consensus        87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv  166 (460)
T COG5170          87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV  166 (460)
T ss_pred             HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence            45667665543  456677789999999985441                 0000                 0001111 


Q ss_pred             eeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC--EEE
Q 013578          294 QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK--ILA  371 (440)
Q Consensus       294 ~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~  371 (440)
                      .-..|.--|.++.|..|...++++ .|-.|.+|++.-..      .......+..+....-..-|++..|+|...  ++.
T Consensus       167 yaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D------~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY  239 (460)
T COG5170         167 YANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIID------GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY  239 (460)
T ss_pred             ccccceeEeeeeeecCchheeeec-cceeeeeccccccC------CceEEEeccCccHHHHHHHHhhcccCHhHcceEEE
Confidence            124677789999999988877766 46789999987432      122222211111111123366788888643  555


Q ss_pred             EecCCEEEEEEcCCccc------hhhh---------hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          372 ATHGSTLQWLSVETGKV------LDTA---------EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       372 ~~~~~~i~i~d~~~~~~------~~~~---------~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +++.|.|++-|++...+      +...         ..+-...|.++.|+++|        +++++-+ =-+|+|||++.
T Consensus       240 SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng--------ryIlsRd-yltvkiwDvnm  310 (460)
T COG5170         240 SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG--------RYILSRD-YLTVKIWDVNM  310 (460)
T ss_pred             ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC--------cEEEEec-cceEEEEeccc
Confidence            67789999999873321      1111         01223578899999998        7777654 46899999976


Q ss_pred             CC
Q 013578          437 LE  438 (440)
Q Consensus       437 ~~  438 (440)
                      .+
T Consensus       311 ~k  312 (460)
T COG5170         311 AK  312 (460)
T ss_pred             cc
Confidence            54

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=1.3e-05  Score=74.21  Aligned_cols=138  Identities=11%  Similarity=0.052  Sum_probs=92.0

Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      ...++.+++++.+-+.+|+|-.+|.|..+.-+...+...    ...-......+|+++++..++..++-...-..|.+|.
T Consensus       124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs----r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~  199 (933)
T KOG2114|consen  124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS----RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYS  199 (933)
T ss_pred             CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc----ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEE
Confidence            356788999999999999999999999886432221110    1122223467899999998887632222334799999


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEE
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITC  402 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~  402 (440)
                      +..+..             .......+...+.|.++++....++++.+..+.+|+......-..+..+|......
T Consensus       200 l~gr~p-------------~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~  261 (933)
T KOG2114|consen  200 LSGRTP-------------SLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLV  261 (933)
T ss_pred             ecCCCc-------------ceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEEEEE
Confidence            884320             01112344556778888877777888889999999998776666664466544433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=5.9e-06  Score=75.88  Aligned_cols=173  Identities=12%  Similarity=0.141  Sum_probs=119.3

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      +++-|+-+|.|++++.. +.. .+...|...      ..+|.++++++.||+|.|..+-+.+        ...++. ...
T Consensus        51 ~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~--------~~~~~d-f~r  113 (846)
T KOG2066|consen   51 FFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD--------EITQYD-FKR  113 (846)
T ss_pred             eeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc--------cceeEe-cCC
Confidence            89999999999999865 433 333233322      6689999999999999999886654        222222 457


Q ss_pred             ceEEEEEcCC-----CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecC
Q 013578          301 AVTWLCFAPN-----SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG  375 (440)
Q Consensus       301 ~v~~~~~~p~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  375 (440)
                      ++.+++++|+     .+++++|+.-| +.++.-+-....       ..    . ........|.++.|  .|.++|-++|
T Consensus       114 piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-------~~----v-~l~~~eG~I~~i~W--~g~lIAWand  178 (846)
T KOG2066|consen  114 PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-------DS----V-VLSEGEGPIHSIKW--RGNLIAWAND  178 (846)
T ss_pred             cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-------cc----e-eeecCccceEEEEe--cCcEEEEecC
Confidence            8999999997     56799999888 777654311100       00    0 11233455777777  5789999999


Q ss_pred             CEEEEEEcCCccchhhhhccccC-----CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEG-----EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~-----~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      -.|++||+.+++.+..++..+..     --..+.|.++.         .|+.|= --+|+|..+.
T Consensus       179 ~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~---------~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  179 DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED---------RLVIGW-GDSVKICSIK  233 (846)
T ss_pred             CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC---------eEEEec-CCeEEEEEEe
Confidence            99999999999988887655532     23467888874         455543 4458888776

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.52  E-value=0.00014  Score=65.87  Aligned_cols=185  Identities=8%  Similarity=0.007  Sum_probs=104.7

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcc-----cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee-eee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS-VMQ  294 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~  294 (440)
                      .++.+..++.|..+|.++|+.+..+.......     .....  .+..++.++.+|.+..+|..+++.    .+.. ...
T Consensus       162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~----~W~~~~~~  235 (394)
T PRK11138        162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQL----IWQQRISQ  235 (394)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChh----hheecccc
Confidence            56667778899999999999887765431111     11111  234567778889998888766541    1100 000


Q ss_pred             ee-ccc-cceEEEEEcC--CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          295 LK-GHK-SAVTWLCFAP--NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       295 ~~-~h~-~~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                      -. .+. .....+..+|  .+..++.++.+|.+..+|..+++.+......            .    ...+.. .+++++
T Consensus       236 ~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~------------~----~~~~~~-~~~~vy  298 (394)
T PRK11138        236 PTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG------------S----VNDFAV-DGGRIY  298 (394)
T ss_pred             CCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC------------C----ccCcEE-ECCEEE
Confidence            00 000 0011111122  2456777778999999999887654321100            0    001111 245555


Q ss_pred             EEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          371 AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       371 ~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +...++.++.+|..+|+.+............+.... +         .+|+.++.||.+.+.|..+++
T Consensus       299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~---------g~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-N---------GYLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-C---------CEEEEEeCCCEEEEEECCCCC
Confidence            566689999999999987654321111112222222 2         367888999999999988875

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.49  E-value=5.6e-05  Score=69.28  Aligned_cols=187  Identities=11%  Similarity=0.084  Sum_probs=114.4

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC----CEEEEEeEecCCCceeeee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA----DVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~  290 (440)
                      .+||+.+..+.-..+.+.+.|.++.+...++.... ...-+.++++|+++++.+.+.    ++...+.....        
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--------  271 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--------  271 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCc--------
Confidence            45666444555566788899999888877776544 446789999999999887322    22222211000        


Q ss_pred             eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                      ....+.-.  .+  -++.++|++...  .++.|.+.|.++..+-  .......++.+        .....++++|||+++
T Consensus       272 ~~vvfni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~--~~~v~~yIPVG--------KsPHGV~vSPDGkyl  335 (635)
T PRK02888        272 WVVVFNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANA--GSALTRYVPVP--------KNPHGVNTSPDGKYF  335 (635)
T ss_pred             eEEEEchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccC--CcceEEEEECC--------CCccceEECCCCCEE
Confidence            01111000  00  133457776655  3568999998861100  00111112111        113469999999999


Q ss_pred             EEec--CCEEEEEEcCCccc------------hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          371 AATH--GSTLQWLSVETGKV------------LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       371 ~~~~--~~~i~i~d~~~~~~------------~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ++++  +..+.|+|+.+.+.            ..+.+  -.......+|.++|        ..+.|-..|..|-.|++..
T Consensus       336 yVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G--------~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        336 IANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGRG--------NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCCC--------CEEEeEeecceeEEEehHH
Confidence            8865  78999999988663            22221  12345567888887        7888889999999999865

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.47  E-value=0.00011  Score=66.56  Aligned_cols=178  Identities=13%  Similarity=0.140  Sum_probs=103.8

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCC----c---ccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQL----K---NNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----~---v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                      .++.++.++.+..+|..+|+.+........    .   ...+..+|  .+..+++++.+|.+..+|..+++    ..+  
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~----~~W--  280 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ----IVW--  280 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC----EEE--
Confidence            456677788899999999887655432110    0   00111122  35567777889999999987665    111  


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                        ...  .+....+..  .+..|+.++.||.+..+|..+++.+.......         ..    ....... -++.+++
T Consensus       281 --~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---------~~----~~~sp~v-~~g~l~v  340 (394)
T PRK11138        281 --KRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL---------HR----LLTAPVL-YNGYLVV  340 (394)
T ss_pred             --eec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccC---------CC----cccCCEE-ECCEEEE
Confidence              111  111112222  45678888889999999998775543211100         00    0111111 2555666


Q ss_pred             EecCCEEEEEEcCCccchhhhhccccCCeEE-EEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          372 ATHGSTLQWLSVETGKVLDTAEKAHEGEITC-MAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       372 ~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ...+|.++.+|..+|+.+..... ....+.+ ..+. +         ..|+.++.||.|..++++
T Consensus       341 ~~~~G~l~~ld~~tG~~~~~~~~-~~~~~~s~P~~~-~---------~~l~v~t~~G~l~~~~~~  394 (394)
T PRK11138        341 GDSEGYLHWINREDGRFVAQQKV-DSSGFLSEPVVA-D---------DKLLIQARDGTVYAITRP  394 (394)
T ss_pred             EeCCCEEEEEECCCCCEEEEEEc-CCCcceeCCEEE-C---------CEEEEEeCCceEEEEeCC
Confidence            66689999999999998876632 2222322 2222 3         368888999999988763

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.46  E-value=4.5e-05  Score=69.88  Aligned_cols=154  Identities=17%  Similarity=0.195  Sum_probs=91.3

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCC-----CceeeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCC---c
Q 013578          215 TADGSTIIASCSEGTDISIWHGKT-----GKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDG---L  285 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~---~  285 (440)
                      .++|+..++   .++.|.+.|..+     .+.+..+.... ....+.++|||+++++++. +.++.|+|+...+..   .
T Consensus       285 vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        285 VKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             hhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            567774444   356799999998     45666666543 4678999999999887765 889999998764420   0


Q ss_pred             eeee-eeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccc-cccccCCCCCeeeeeeEEe
Q 013578          286 VKAV-TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL-PIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       286 ~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~  363 (440)
                      .... ....+..- ...-...+|.++|....|...|..|..||+...-....-......+ .+..+-..+|...-..-.-
T Consensus       361 ~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~  439 (635)
T PRK02888        361 IKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETK  439 (635)
T ss_pred             CCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcC
Confidence            0000 01222222 2234567899999888888899999999998631110000000111 1223333344332223334


Q ss_pred             CCCCCEEEEe
Q 013578          364 SSDGKILAAT  373 (440)
Q Consensus       364 s~~g~~l~~~  373 (440)
                      .|||+||++.
T Consensus       440 ~~dgk~l~~~  449 (635)
T PRK02888        440 EADGKWLVSL  449 (635)
T ss_pred             CCCCCEEEEc
Confidence            6788888774

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.44  E-value=1.3e-05  Score=71.49  Aligned_cols=74  Identities=14%  Similarity=0.209  Sum_probs=61.1

Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      ....+.|++++|+...|+.|+.||.|.+||...+.          ..+....-.++.++|||+|..+++|+..|.+.+||
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCe----------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence            35678999999999999999999999999975442          12222345578999999999999999999999999


Q ss_pred             cCcc
Q 013578          328 INVR  331 (440)
Q Consensus       328 ~~~~  331 (440)
                      +.-.
T Consensus       328 ~ALs  331 (545)
T PF11768_consen  328 MALS  331 (545)
T ss_pred             eecC
Confidence            8743

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.37  E-value=0.00016  Score=60.83  Aligned_cols=186  Identities=16%  Similarity=0.114  Sum_probs=109.9

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEec-CCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAIS-PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      .+....++++....+.|+.|+..+++... +....  ...+++. ++ ..|+++.. +.+.++|...++      ...+.
T Consensus         8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~------~~~~~   76 (246)
T PF08450_consen    8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGK------VTVLA   76 (246)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEET-TCEEEEETTTTE------EEEEE
T ss_pred             ECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEc-CceEEEecCCCc------EEEEe
Confidence            34333377777788999999998775532 33322  5667777 56 45555554 455666764432      11222


Q ss_pred             eee--c-cccceEEEEEcCCCCEEEEEeCC--------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          294 QLK--G-HKSAVTWLCFAPNSEQIITASKD--------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       294 ~~~--~-h~~~v~~~~~~p~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                      ...  . .....+.+++.|+|++.++....        |.|..++.. +..        ....       ......+.++
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--------~~~~-------~~~~~pNGi~  140 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--------TVVA-------DGLGFPNGIA  140 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--------EEEE-------EEESSEEEEE
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--------EEEe-------cCcccccceE
Confidence            221  1 34567899999999977776543        446666655 211        0000       0011245799


Q ss_pred             eCCCCCEEEEec--CCEEEEEEcCCccc-h---hhhhcccc--CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          363 LSSDGKILAATH--GSTLQWLSVETGKV-L---DTAEKAHE--GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       363 ~s~~g~~l~~~~--~~~i~i~d~~~~~~-~---~~~~~~h~--~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      |+|+++.|..++  .+.|..|+...... +   ..+.....  +..-.+++..++        ++.++.-..+.|.+++.
T Consensus       141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G--------~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG--------NLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS---------EEEEEETTTEEEEEET
T ss_pred             ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC--------CEEEEEcCCCEEEEECC
Confidence            999999776543  68899998853221 1   11111112  347889999998        77777777889999987


Q ss_pred             C
Q 013578          435 P  435 (440)
Q Consensus       435 ~  435 (440)
                      +
T Consensus       213 ~  213 (246)
T PF08450_consen  213 D  213 (246)
T ss_dssp             T
T ss_pred             C
Confidence            6

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.27  E-value=2.2e-05  Score=73.33  Aligned_cols=141  Identities=12%  Similarity=0.165  Sum_probs=101.4

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec---------CCCEEEEEeEecCCCceeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF---------TADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                      .+.+|...|+|.+-|..+.+.++++..|.+.+..  |+-.|+.|++++.         |..|+|||++.-+        .
T Consensus       189 ~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr--------a  258 (1118)
T KOG1275|consen  189 NLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR--------A  258 (1118)
T ss_pred             EEEeecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhh--------c
Confidence            8899999999999999999999999999988764  5667999998874         4568999997654        2


Q ss_pred             eeeeeccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          292 VMQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                      +..+.-+.++ .-+.|+|. ...++.++..|...+-|..+.....   .       ...........+..+.+|++|..|
T Consensus       259 l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~---~-------~~~~v~p~~s~i~~fDiSsn~~al  327 (1118)
T KOG1275|consen  259 LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP---A-------GVKMVNPNGSGISAFDISSNGDAL  327 (1118)
T ss_pred             cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc---c-------ceeEEccCCCcceeEEecCCCceE
Confidence            3333333333 44677884 3468888889999998844321110   0       011111112237789999999999


Q ss_pred             EEec-CCEEEEEE
Q 013578          371 AATH-GSTLQWLS  382 (440)
Q Consensus       371 ~~~~-~~~i~i~d  382 (440)
                      |.|+ +|.|.+|.
T Consensus       328 afgd~~g~v~~wa  340 (1118)
T KOG1275|consen  328 AFGDHEGHVNLWA  340 (1118)
T ss_pred             EEecccCcEeeec
Confidence            9997 89999997

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.25  E-value=0.0001  Score=67.09  Aligned_cols=60  Identities=13%  Similarity=0.112  Sum_probs=45.4

Q ss_pred             EEEEeeCCceEEEEeCCCCceee-----ee-eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEe
Q 013578          221 IIASCSEGTDISIWHGKTGKLLG-----NV-DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVY  280 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~-----~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  280 (440)
                      +++.|+..|.|.++.+..+.+-.     .. ..|...|++++|++++..+++|...|+|..-.+..
T Consensus        90 lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   90 LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            66777777878887766532211     11 13677899999999999999999999999888765

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.24  E-value=0.0035  Score=56.58  Aligned_cols=96  Identities=16%  Similarity=0.251  Sum_probs=69.7

Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578          297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G  375 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~  375 (440)
                      ...+.|.+++++|+...|+.|+.||.|.+||...+....                .......+.++|+|+|.++++|+ .
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~----------------~ka~~~P~~iaWHp~gai~~V~s~q  320 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL----------------AKAEFIPTLIAWHPDGAIFVVGSEQ  320 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee----------------eeecccceEEEEcCCCcEEEEEcCC
Confidence            467889999999999999999999999999987542110                01122356799999999999987 5


Q ss_pred             CEEEEEEcCCccchhhhh---------------ccccCCeEEEEecCC
Q 013578          376 STLQWLSVETGKVLDTAE---------------KAHEGEITCMAWAPK  408 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~---------------~~h~~~v~~v~~~~~  408 (440)
                      |.+.+||+.-......+.               ..+...+..+.|.+.
T Consensus       321 GelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~  368 (545)
T PF11768_consen  321 GELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPA  368 (545)
T ss_pred             ceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccC
Confidence            999999986443211110               134556778889854

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.21  E-value=0.00068  Score=55.90  Aligned_cols=127  Identities=13%  Similarity=0.073  Sum_probs=63.5

Q ss_pred             CCcccEEEecCCCCeEEEEecCCCEEEEEeEecC---CCceeeeeeeeeeeccccceEEEEEcCCC-CEEEEEeCCCcEE
Q 013578          249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK---DGLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQIITASKDGTLR  324 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~  324 (440)
                      +..+-.++|++.++.|+++-+..-..+|.++...   ...................+.+++++|.. .+++....+..|.
T Consensus       117 N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~  196 (248)
T PF06977_consen  117 NKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLL  196 (248)
T ss_dssp             SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEE
T ss_pred             CcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEE
Confidence            4457789999998888888887778888886511   10000000011111233457889999964 4556666777888


Q ss_pred             EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEE
Q 013578          325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWL  381 (440)
Q Consensus       325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~  381 (440)
                      .+|... ..+..     ..+..........-.+--.++|.++|.+.+++.-+..++|
T Consensus       197 ~~d~~G-~~~~~-----~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  197 ELDRQG-RVVSS-----LSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             EE-TT---EEEE-----EE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             EECCCC-CEEEE-----EEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            888542 21110     0000000000111122346999999998888887777665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.21  E-value=0.00054  Score=57.30  Aligned_cols=143  Identities=20%  Similarity=0.202  Sum_probs=83.3

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeee-eCCCC---cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNV-DTNQL---KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      .++.++.++.|+.+|..+|+.+... .....   ..........++.++++..++.|..+|+.+++        .+....
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~--------~~w~~~  149 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK--------LLWKYP  149 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE--------EEEEEE
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc--------EEEEee
Confidence            4555567778999999999998774 32211   11222333348888899889999999987665        222232


Q ss_pred             cccc----------ceEEEEEcCCCCEEEEEeCCCc-EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578          297 GHKS----------AVTWLCFAPNSEQIITASKDGT-LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS  365 (440)
Q Consensus       297 ~h~~----------~v~~~~~~p~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  365 (440)
                      ....          .+.+-....++ .++.++.++. +.+ |+.++..+....  .          ..    +..+ ...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~----------~~----~~~~-~~~  210 (238)
T PF13360_consen  150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--I----------SG----IYSL-PSV  210 (238)
T ss_dssp             SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--S----------S-----ECEC-EEC
T ss_pred             cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--C----------CC----ccCC-cee
Confidence            2221          11222222244 6777777775 555 998775321100  0          00    1111 335


Q ss_pred             CCCEEEEe-cCCEEEEEEcCCccchh
Q 013578          366 DGKILAAT-HGSTLQWLSVETGKVLD  390 (440)
Q Consensus       366 ~g~~l~~~-~~~~i~i~d~~~~~~~~  390 (440)
                      ++..|+++ .++.|..||.++|+.+.
T Consensus       211 ~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  211 DGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             CCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             eCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            55555554 59999999999998753

...

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.20  E-value=1.1e-06  Score=78.34  Aligned_cols=190  Identities=12%  Similarity=0.158  Sum_probs=125.7

Q ss_pred             CeEEEEeeCCceEEEEeCCCCcee--eeeeCCCCcccEEEecC-CCCeEEEEe----cCCCEEEEEeEecCCCceeeeee
Q 013578          219 STIIASCSEGTDISIWHGKTGKLL--GNVDTNQLKNNMAAISP-NGRFLAAAA----FTADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                      +.+++.|..+|.|-+-..+...-.  .....+....++++|++ |.++||+|-    .|..+.|||+...-.....    
T Consensus        70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke----  145 (783)
T KOG1008|consen   70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKE----  145 (783)
T ss_pred             hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcc----
Confidence            347888889999988877654322  23345667789999998 567777773    3567999999766321111    


Q ss_pred             eeeee-ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC-CCCE
Q 013578          292 VMQLK-GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS-DGKI  369 (440)
Q Consensus       292 ~~~~~-~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~  369 (440)
                      ...+. +......+++|..+.+++.+|.....+.++|++....        ....       -....+..+..+| .+.|
T Consensus       146 ~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~--------~~~s-------vnTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  146 SPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD--------SVSS-------VNTKYVQGITVDPFSPNY  210 (783)
T ss_pred             ccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh--------hhhh-------hhhhhcccceecCCCCCc
Confidence            11111 1334456888888888899999999999999983211        0000       0111245688888 7889


Q ss_pred             EEEecCCEEEEEEc-CC-ccchhhhhccccC-----CeEEEEecCCCCCCCCCcceEEEEeeCC-CeEEEEeCCC
Q 013578          370 LAATHGSTLQWLSV-ET-GKVLDTAEKAHEG-----EITCMAWAPKTIPMGNQQVSVLATSSVD-KKVKLWLAPS  436 (440)
Q Consensus       370 l~~~~~~~i~i~d~-~~-~~~~~~~~~~h~~-----~v~~v~~~~~~~~~~~~~~~~l~t~~~D-g~i~vw~~~~  436 (440)
                      ++...|+.|.+||. .. ..++..+.  |..     .+..++|+|...       .+|++...| ++|+++++..
T Consensus       211 ~cs~~dg~iAiwD~~rnienpl~~i~--~~~N~~~~~l~~~aycPtrt-------glla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  211 FCSNSDGDIAIWDTYRNIENPLQIIL--RNENKKPKQLFALAYCPTRT-------GLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             eeccccCceeeccchhhhccHHHHHh--hCCCCcccceeeEEeccCCc-------chhhhhccCcceEEEecccc
Confidence            99988999999994 22 33444443  332     499999999742       466666664 7889988753

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.19  E-value=2.7e-06  Score=78.97  Aligned_cols=160  Identities=14%  Similarity=0.131  Sum_probs=113.6

Q ss_pred             ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578          240 KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      +..+.+..+....+|++|+-+.++|++|+..|.|++|++.++.        ......+|.++|+.+.-+.+|..+++.+.
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~--------~e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS--------MEESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc--------ccccccccccccccccccCCcceeeeecc
Confidence            3445666777889999999999999999999999999998876        56677889999999999999988776654


Q ss_pred             CC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccc
Q 013578          320 DG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAH  396 (440)
Q Consensus       320 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h  396 (440)
                      -.  -..+|++......             .+...    .-.++.|+..-.+-+.|. .....+||++++..+.++..+-
T Consensus      1164 ~S~PlsaLW~~~s~~~~-------------~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~ 1226 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGP-------------RHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT 1226 (1516)
T ss_pred             ccCchHHHhccccccCc-------------ccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc
Confidence            33  4678998742111             11111    123577877755544444 5778999999999888754222


Q ss_pred             ---cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          397 ---EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       397 ---~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                         .-.=+++.|+|+.        .+++   .||  -+||++..
T Consensus      1227 ~~~~y~~n~a~FsP~D--------~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1227 VTSSYSNNLAHFSPCD--------TLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred             hhhhhhccccccCCCc--------ceEe---eCc--eeeeeccH
Confidence               1233778899986        4544   455  36777643

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.17  E-value=0.00014  Score=69.30  Aligned_cols=144  Identities=15%  Similarity=0.130  Sum_probs=96.9

Q ss_pred             EEEE-eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC-------CCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578          221 IIAS-CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN-------GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       221 ~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                      +++. ......|+-.|++.|+.+..+..+... ....+.|+       ...-++|-.+..+..||.|......+  ....
T Consensus       495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v--~~~~  571 (794)
T PF08553_consen  495 MILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV--DSQS  571 (794)
T ss_pred             eEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee--eccc
Confidence            4443 345677999999999999999887643 23344443       33456777888999999986542111  1111


Q ss_pred             eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                      ..+ .......|++-+.+| +||.|+.+|.||+||-- +..             ......+-..+|..+..+.||+|+++
T Consensus       572 k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~-------------AKT~lp~lG~pI~~iDvt~DGkwila  635 (794)
T PF08553_consen  572 KQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKR-------------AKTALPGLGDPIIGIDVTADGKWILA  635 (794)
T ss_pred             ccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chh-------------hhhcCCCCCCCeeEEEecCCCcEEEE
Confidence            122 234557788877666 59999999999999932 111             01112233466899999999999999


Q ss_pred             ecCCEEEEEEc
Q 013578          373 THGSTLQWLSV  383 (440)
Q Consensus       373 ~~~~~i~i~d~  383 (440)
                      ..+..|.++++
T Consensus       636 Tc~tyLlLi~t  646 (794)
T PF08553_consen  636 TCKTYLLLIDT  646 (794)
T ss_pred             eecceEEEEEE
Confidence            98888888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.16  E-value=0.0017  Score=53.57  Aligned_cols=208  Identities=17%  Similarity=0.167  Sum_probs=109.9

Q ss_pred             cccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCc-ee
Q 013578          210 SATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGL-VK  287 (440)
Q Consensus       210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~  287 (440)
                      +.+.+.|+.+.++++....+.|..++. +|+.++.+... ....-.+++..++.++++--.++.+.++++....... ..
T Consensus        25 SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~  103 (248)
T PF06977_consen   25 SGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRA  103 (248)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EE
T ss_pred             cccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchh
Confidence            444557887778888888999988996 48888887644 3456778888777666655558889999885433211 11


Q ss_pred             eeeeee--eeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccc-cccccCCCCCeeeeeeEEeC
Q 013578          288 AVTSVM--QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL-PIPLLDSNGATLQYDRLSLS  364 (440)
Q Consensus       288 ~~~~~~--~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s  364 (440)
                      ......  ....+...+-.++|+|.+..|+.+-...-.++|.++...    ........ .............+..+++.
T Consensus       104 ~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~S~l~~~  179 (248)
T PF06977_consen  104 DVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP----GGFDLFVSDDQDLDDDKLFVRDLSGLSYD  179 (248)
T ss_dssp             EEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-----SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred             hceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc----CccceeeccccccccccceeccccceEEc
Confidence            111111  112345668999999988888777777777788776411    00000000 00011011222336788898


Q ss_pred             CCC-CEEEEec-CCEEEEEEcCCccchhhh--hcc-c-----cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578          365 SDG-KILAATH-GSTLQWLSVETGKVLDTA--EKA-H-----EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW  432 (440)
Q Consensus       365 ~~g-~~l~~~~-~~~i~i~d~~~~~~~~~~--~~~-h-----~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw  432 (440)
                      |.. .+++.++ ...|..+| .+|+.+..+  ..+ |     -.....|+|.++|        + |...++-+...+|
T Consensus       180 p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G--------~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  180 PRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG--------N-LYIVSEPNLFYRF  247 (248)
T ss_dssp             TTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-----------EEEEETTTEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC--------C-EEEEcCCceEEEe
Confidence            874 4555444 67888888 566654332  111 1     1257889999997        4 4444566666555

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.14  E-value=3.3e-05  Score=70.18  Aligned_cols=112  Identities=18%  Similarity=0.190  Sum_probs=83.1

Q ss_pred             CCCCeEEEEeeCCceEEEEeCCCCceeeeee-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578          216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVD-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      ..++ +++.|+.-|.+++|+-..++....-. +..+.+....++++..++|.|+..|.|.++-+............  ..
T Consensus        43 st~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t--~~  119 (726)
T KOG3621|consen   43 ATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT--PC  119 (726)
T ss_pred             cCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec--cc
Confidence            3444 89999999999999977665433222 23444566788999999999999999999998764422211111  11


Q ss_pred             eeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q 013578          295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINV  330 (440)
Q Consensus       295 ~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~  330 (440)
                      -+.|...|++++|++++..|++|...|+|..-.+..
T Consensus       120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            123788999999999999999999999999888875

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.10  E-value=0.0051  Score=57.29  Aligned_cols=178  Identities=15%  Similarity=0.127  Sum_probs=99.9

Q ss_pred             CCceEEEEeCCCCceeeeeeCCCCc--------------------c-cEEEecCCCCeEEEEecCC--------------
Q 013578          227 EGTDISIWHGKTGKLLGNVDTNQLK--------------------N-NMAAISPNGRFLAAAAFTA--------------  271 (440)
Q Consensus       227 ~d~~i~vwd~~~~~~~~~~~~~~~~--------------------v-~~~~~s~~~~~l~~~~~dg--------------  271 (440)
                      .++.+..+|..+|+.+-.+......                    + ...++.+.+..+++++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            4678999999999887766542110                    0 1245555667788887665              


Q ss_pred             ----CEEEEEeEecCCCceeeeeeeeeeeccc--------cceE-EEEEcCCCC---EEEEEeCCCcEEEEecCcccccc
Q 013578          272 ----DVKVWEIVYSKDGLVKAVTSVMQLKGHK--------SAVT-WLCFAPNSE---QIITASKDGTLRVWNINVRYHLD  335 (440)
Q Consensus       272 ----~i~i~d~~~~~~~~~~~~~~~~~~~~h~--------~~v~-~~~~~p~~~---~l~s~~~dg~i~iwd~~~~~~~~  335 (440)
                          .|.-+|..+++    ..+...  ...|.        .++. .+. .-++.   .++.++.+|.+...|.++++.+.
T Consensus       253 ~~~~~l~Ald~~tG~----~~W~~~--~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W  325 (488)
T cd00216         253 LYTDSIVALDADTGK----VKWFYQ--TTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS  325 (488)
T ss_pred             CceeeEEEEcCCCCC----EEEEee--CCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence                57777876665    222111  11111        1111 111 01333   57788889999999999887654


Q ss_pred             CCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE------------------EecCCEEEEEEcCCccchhhhhcc-c
Q 013578          336 EDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA------------------ATHGSTLQWLSVETGKVLDTAEKA-H  396 (440)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~------------------~~~~~~i~i~d~~~~~~~~~~~~~-h  396 (440)
                      +....                 ...++.+| +.+++                  ...++.+.-+|..+|+.+.+...+ +
T Consensus       326 ~~~~~-----------------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~  387 (488)
T cd00216         326 ARPEV-----------------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTI  387 (488)
T ss_pred             EeEee-----------------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcc
Confidence            32111                 00122223 22111                  112577888888888877665322 0


Q ss_pred             c------CCe--EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          397 E------GEI--TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       397 ~------~~v--~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      .      .+.  ..+....          .+|+.++.||.++.+|..+++.
T Consensus       388 ~~~~~~g~~~~~~~~~~~g----------~~v~~g~~dG~l~ald~~tG~~  428 (488)
T cd00216         388 RDSWNIGFPHWGGSLATAG----------NLVFAGAADGYFRAFDATTGKE  428 (488)
T ss_pred             ccccccCCcccCcceEecC----------CeEEEECCCCeEEEEECCCCce
Confidence            0      111  1112221          4788888999999999998863

The alignment model contains an 8-bladed beta-propeller.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.09  E-value=0.002  Score=57.41  Aligned_cols=174  Identities=12%  Similarity=0.061  Sum_probs=85.6

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeC--------CCCcccEEEecC-----CC---CeEEEEecCCCEEEEEeEecCCC
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDT--------NQLKNNMAAISP-----NG---RFLAAAAFTADVKVWEIVYSKDG  284 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~s~-----~~---~~l~~~~~dg~i~i~d~~~~~~~  284 (440)
                      +++.|..+|.+.|.|++....+..-..        ....++++.|+.     |+   -.+++|+..|.+.+|.+.-...+
T Consensus        99 Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g  178 (395)
T PF08596_consen   99 FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNG  178 (395)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG
T ss_pred             EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCC
Confidence            899999999999999987766655321        233466777752     33   47889999999999998532211


Q ss_pred             ceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578          285 LVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS  364 (440)
Q Consensus       285 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  364 (440)
                      .. ..........+.++|..+.                  ..|..++............        .....        
T Consensus       179 ~f-~v~~~~~~~~~~~~i~~I~------------------~i~~~~G~~a~At~~~~~~--------l~~g~--------  223 (395)
T PF08596_consen  179 RF-SVQFAGATTNHDSPILSII------------------PINADTGESALATISAMQG--------LSKGI--------  223 (395)
T ss_dssp             -E-EEEEEEEE--SS----EEE------------------EEETTT--B-B-BHHHHHG--------GGGT---------
T ss_pred             ce-EEEEeeccccCCCceEEEE------------------EEECCCCCcccCchhHhhc--------cccCC--------
Confidence            11 1111111112333333322                  1122222110000000000        00000        


Q ss_pred             CCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEec-----CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          365 SDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA-----PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       365 ~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~-----~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ....+++++++..++++...+.+...... ...-....+.+-     ..+        ..|++-..||.|+++.++..+
T Consensus       224 ~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~--------~~Lv~l~~~G~i~i~SLP~Lk  293 (395)
T PF08596_consen  224 SIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGG--------YCLVCLFNNGSIRIYSLPSLK  293 (395)
T ss_dssp             ---EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEE--------EEEEEEETTSEEEEEETTT--
T ss_pred             CcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCc--------eEEEEEECCCcEEEEECCCch
Confidence            00125677789999999998887665543 121223334442     233        688888999999999998865

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00320 WD40 WD40 repeats

Probab=98.07  E-value=6.8e-06  Score=46.02  Aligned_cols=37  Identities=49%  Similarity=0.740  Sum_probs=33.5

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEe
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK  119 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~  119 (440)
                      ++..+.+|...|.+++|++++.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3566778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.06  E-value=0.00067  Score=61.03  Aligned_cols=189  Identities=14%  Similarity=0.164  Sum_probs=106.9

Q ss_pred             CCCCceEEEccCCCeEEEEeecCCc-ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578          138 GGPPTAVAFADNATSIVVATHNLSG-CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA  216 (440)
Q Consensus       138 ~~~v~~v~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (440)
                      ...+..-+|+|+++.++........ ..+++++.......                        .............++|
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~------------------------~i~~~~g~~~~P~fsp  247 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP------------------------VILNFNGNNGAPAFSP  247 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc------------------------eeeccCCccCCccCCC
Confidence            3556677899999998888766555 45665555443211                        1111111122344589


Q ss_pred             CCCeEEEEeeCCce--EEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeee
Q 013578          217 DGSTIIASCSEGTD--ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       217 ~~~~~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      ||+.++++...|+.  |+++|+..+.. ..+....+.-..-.|+|||+.++..+. .|.-.||-.+....       ...
T Consensus       248 DG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-------~~~  319 (425)
T COG0823         248 DGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-------QVT  319 (425)
T ss_pred             CCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-------cee
Confidence            99988888888776  55667776653 335444444456789999999887764 45545554432221       112


Q ss_pred             eeeccccceEEEEEcCCCCEEEEEeC-CCc--EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          294 QLKGHKSAVTWLCFAPNSEQIITASK-DGT--LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       294 ~~~~h~~~v~~~~~~p~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                      .+....+.-..-.|+|||++|+..+. +|.  |.+.|+.+...       .+.+...        .....-+|.++|+.+
T Consensus       320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-------~~~lt~~--------~~~e~ps~~~ng~~i  384 (425)
T COG0823         320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-------IRILTST--------YLNESPSWAPNGRMI  384 (425)
T ss_pred             EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-------EEEcccc--------ccCCCCCcCCCCceE
Confidence            22212222226779999999887764 344  44555543221       1111111        112246788888877


Q ss_pred             EEe
Q 013578          371 AAT  373 (440)
Q Consensus       371 ~~~  373 (440)
                      ...
T Consensus       385 ~~~  387 (425)
T COG0823         385 MFS  387 (425)
T ss_pred             EEe
Confidence            754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.04  E-value=5.6e-05  Score=70.21  Aligned_cols=94  Identities=16%  Similarity=0.259  Sum_probs=72.4

Q ss_pred             CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF  307 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (440)
                      .|.|.||- .+|++.+.... .-.+++++|+|..-.|+.|=.-|.+.+|......        .-.....|..+|..+.|
T Consensus        40 ~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--------~htv~~th~a~i~~l~w  109 (1416)
T KOG3617|consen   40 GGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--------THTVVETHPAPIQGLDW  109 (1416)
T ss_pred             CceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCce--------eeeeccCCCCCceeEEe
Confidence            45677763 55665444332 2235779999999999999999999999875543        23334569999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCcc
Q 013578          308 APNSEQIITASKDGTLRVWNINVR  331 (440)
Q Consensus       308 ~p~~~~l~s~~~dg~i~iwd~~~~  331 (440)
                      ||+|..|+++..-|.|.+|.....
T Consensus       110 S~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen  110 SHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             cCCCCeEEEcCCCceeEEEEeeec
Confidence            999999999999999999988743

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.02  E-value=0.0022  Score=60.37  Aligned_cols=172  Identities=13%  Similarity=0.086  Sum_probs=102.3

Q ss_pred             ccCcceeEEEEccCCCEEEEee------CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           89 GHGDSVTGLCFSSDGKCLATAC------ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s------~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      +....+...+++|||+.+|..-      .|+.-.||-...+... ...   ..+  .....-.|+|+|+.+.+...... 
T Consensus       347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~l---t~g--~~~t~PsWspDG~~lw~v~dg~~-  419 (591)
T PRK13616        347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQV---LEG--HSLTRPSWSLDADAVWVVVDGNT-  419 (591)
T ss_pred             ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eee---ecC--CCCCCceECCCCCceEEEecCcc-
Confidence            3334688999999999887665      3555566654432221 111   111  34778899999988777642200 


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                       ..                                                       ++......+.+.+.++..++..
T Consensus       420 -~~-------------------------------------------------------~v~~~~~~gql~~~~vd~ge~~  443 (591)
T PRK13616        420 -VV-------------------------------------------------------RVIRDPATGQLARTPVDASAVA  443 (591)
T ss_pred             -eE-------------------------------------------------------EEeccCCCceEEEEeccCchhh
Confidence             00                                                       2222223456776677666553


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec-cccceEEEEEcCCCCEEEEEeCCC
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      .   .....|..+.|||||..++... +|+|++--+.....+. ........+.. -...+.++.|.+++.++ .+..++
T Consensus       444 ~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~  517 (591)
T PRK13616        444 S---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDP  517 (591)
T ss_pred             h---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccceEecCCEEE-EEecCC
Confidence            3   2345699999999999998876 5788776555544443 22222222322 33446889999988854 555555


Q ss_pred             cEEEEecC
Q 013578          322 TLRVWNIN  329 (440)
Q Consensus       322 ~i~iwd~~  329 (440)
                      ...+|.+.
T Consensus       518 ~~~v~~v~  525 (591)
T PRK13616        518 EHPVWYVN  525 (591)
T ss_pred             CCceEEEe
Confidence            55566554

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.01  E-value=3e-06  Score=75.72  Aligned_cols=101  Identities=13%  Similarity=0.289  Sum_probs=62.6

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEe-EecCCCceeeeeeeeeee--
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEI-VYSKDGLVKAVTSVMQLK--  296 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~--  296 (440)
                      ++.+|.....+.++|++.. +..........+..+.++| .++++++-. ||.|-+||. +.-+.       ++..+.  
T Consensus       168 lvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien-------pl~~i~~~  238 (783)
T KOG1008|consen  168 LVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN-------PLQIILRN  238 (783)
T ss_pred             hhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhcc-------HHHHHhhC
Confidence            6777777778999998732 1111122233566778888 777876665 999999993 22210       111111  


Q ss_pred             --ccccceEEEEEcCCCC-EEEEEeC-CCcEEEEecCc
Q 013578          297 --GHKSAVTWLCFAPNSE-QIITASK-DGTLRVWNINV  330 (440)
Q Consensus       297 --~h~~~v~~~~~~p~~~-~l~s~~~-dg~i~iwd~~~  330 (440)
                        .....+..++|.|... .+++... .++|+++|+..
T Consensus       239 ~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  239 ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence              1123489999999543 4555554 56899999863

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=0.0048  Score=55.38  Aligned_cols=198  Identities=14%  Similarity=0.179  Sum_probs=128.2

Q ss_pred             cccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec---CCCEEEEEeEecCCCce
Q 013578          210 SATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF---TADVKVWEIVYSKDGLV  286 (440)
Q Consensus       210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~  286 (440)
                      .....++.+....+....+..|.+.|..+.+......... ....++++++++.++++..   ++.+.+.|-...+    
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~----  151 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK----  151 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe----
Confidence            3444567777677777778889999988877777765544 5678999999988888876   5667777754443    


Q ss_pred             eeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578          287 KAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS  365 (440)
Q Consensus       287 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  365 (440)
                          .......-..+ ..++++|+|..++... .++.|.+.|.+......  ......    ....    ..-..+.+++
T Consensus       152 ----~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~----~~~~----~~P~~i~v~~  216 (381)
T COG3391         152 ----VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSL----VGVG----TGPAGIAVDP  216 (381)
T ss_pred             ----EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cccccc----cccC----CCCceEEECC
Confidence                22222222234 8899999999766554 78899999977543321  000000    0000    1123589999


Q ss_pred             CCCEEEEec--C--CEEEEEEcCCccchhh-hhccccCCeEEEEecCCCCCCCCCcceEEEEe-eCCCeEEEEeCCC
Q 013578          366 DGKILAATH--G--STLQWLSVETGKVLDT-AEKAHEGEITCMAWAPKTIPMGNQQVSVLATS-SVDKKVKLWLAPS  436 (440)
Q Consensus       366 ~g~~l~~~~--~--~~i~i~d~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~-~~Dg~i~vw~~~~  436 (440)
                      +|.++.+..  +  +.+...|..++..... ...+.. ....+..+|++        ..+... +..+.+.+-|..+
T Consensus       217 ~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g--------~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         217 DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAG--------KAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCC--------CEEEEEecCCCeEEEEeCCC
Confidence            999666543  2  5899999998887665 211222 56778899987        555555 3346677766654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.97  E-value=0.0006  Score=61.35  Aligned_cols=188  Identities=16%  Similarity=0.183  Sum_probs=111.9

Q ss_pred             CcceeEEEEccCCCEEEEee---CC-CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           91 GDSVTGLCFSSDGKCLATAC---AD-GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s---~d-g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      ...+..-+|+|++..++.-+   .. ..+.+++++++.....  ..    ..+.-..-+|+|||+.++.+........++
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--~~----~~g~~~~P~fspDG~~l~f~~~rdg~~~iy  265 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--LN----FNGNNGAPAFSPDGSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--ec----cCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence            44566678899988766542   22 3588888887764421  11    224455678999999999999888888888


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce--EEEEeCCCCceeee
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD--ISIWHGKTGKLLGN  244 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~vwd~~~~~~~~~  244 (440)
                      +.+........-                        .........-.++|||+.++++.+..|.  |.+++.+.... ..
T Consensus       266 ~~dl~~~~~~~L------------------------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~r  320 (425)
T COG0823         266 LMDLDGKNLPRL------------------------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TR  320 (425)
T ss_pred             EEcCCCCcceec------------------------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eE
Confidence            888766531110                        0000001123458999988888877776  55556654443 33


Q ss_pred             eeCCCCcccEEEecCCCCeEEEEecC-CC--EEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578          245 VDTNQLKNNMAAISPNGRFLAAAAFT-AD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       245 ~~~~~~~v~~~~~s~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                      +......-..-.|+|||++|+..+.. |.  |.++|+..+.        ....+ .+......-.|.|+++.+...+
T Consensus       321 iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~--------~~~~l-t~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         321 LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG--------KIRIL-TSTYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC--------cEEEc-cccccCCCCCcCCCCceEEEec
Confidence            33333333377899999999887753 44  4444433222        01111 1223334456777777665444

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.00013  Score=61.76  Aligned_cols=93  Identities=14%  Similarity=0.130  Sum_probs=76.2

Q ss_pred             EEEEeCCCCceeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578          231 ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP  309 (440)
Q Consensus       231 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  309 (440)
                      +++.+..+.+....+..+...|..++|+|..+ ++..++.+.+|.|.|+.+..        .+..+..+ ..+++++|.-
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--------~vssy~a~-~~~wSC~wDl  245 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--------VVSSYIAY-NQIWSCCWDL  245 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--------eeeheecc-CCceeeeecc
Confidence            77777777776667777888899999999877 78889999999999997664        55666666 7899999987


Q ss_pred             CCC-EEEEEeCCCcEEEEecCccc
Q 013578          310 NSE-QIITASKDGTLRVWNINVRY  332 (440)
Q Consensus       310 ~~~-~l~s~~~dg~i~iwd~~~~~  332 (440)
                      |.. +|+.|-.+|.|.|||++...
T Consensus       246 de~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  246 DERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             CCcceeEEeccCceEEEEEccCCC
Confidence            664 67888899999999999653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.93  E-value=0.0027  Score=57.48  Aligned_cols=228  Identities=12%  Similarity=0.127  Sum_probs=102.3

Q ss_pred             CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578          138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD  217 (440)
Q Consensus       138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (440)
                      ...+..+.++|+++.+++++..    ...++......                           ......+ ...++.+.
T Consensus        32 ~~~p~~ls~npngr~v~V~g~g----eY~iyt~~~~r---------------------------~k~~G~g-~~~vw~~~   79 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDG----EYEIYTALAWR---------------------------NKAFGSG-LSFVWSSR   79 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETT----EEEEEETTTTE---------------------------EEEEEE--SEEEE-TS
T ss_pred             CcCCeeEEECCCCCEEEEEcCC----EEEEEEccCCc---------------------------ccccCce-eEEEEecC
Confidence            3568999999999999996543    33333211110                           0000111 11122333


Q ss_pred             CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578          218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                      +  .+++-...+.|.++.--+.+....+... ..+..+..   |.+|+..+.+ .|.+||+...+        .+..+..
T Consensus        80 n--~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~--------~i~~i~v  144 (443)
T PF04053_consen   80 N--RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK--------LIRRIDV  144 (443)
T ss_dssp             S--EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT----------EEEEESS
T ss_pred             c--cEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc--------eeeEEec
Confidence            3  3555555777888632223332333332 12333332   8888777644 89999996654        5555542


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccc-cccccccCCCCCeeeeeeEEeCCCCCEEEEecCC
Q 013578          298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLK-VLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS  376 (440)
Q Consensus       298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  376 (440)
                        .+|..+.|+++|.+++..+.+ .+.|++.+............. .+.    ....-...|.+..|..+ -++.+... 
T Consensus       145 --~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~----~~~E~~~~IkSg~W~~d-~fiYtT~~-  215 (443)
T PF04053_consen  145 --SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFE----LIHEISERIKSGCWVED-CFIYTTSN-  215 (443)
T ss_dssp             ---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE----EEEEE-S--SEEEEETT-EEEEE-TT-
T ss_pred             --CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceE----EEEEecceeEEEEEEcC-EEEEEcCC-
Confidence              248999999999999988865 788877653211000000000 000    00000234667777766 33333333 


Q ss_pred             EEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          377 TLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       377 ~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      .++.  .-.|+.  +..+    +.++.=+...+..        ..+.....|+.|..+.++
T Consensus       216 ~lkY--l~~Ge~~~i~~l----d~~~yllgy~~~~--------~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  216 HLKY--LVNGETGIIAHL----DKPLYLLGYLPKE--------NRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEEE--EETTEEEEEEE-----SS--EEEEEETTT--------TEEEEE-TT--EEEEE--
T ss_pred             eEEE--EEcCCcceEEEc----CCceEEEEEEccC--------CEEEEEECCCCEEEEEEC
Confidence            5555  222322  2221    3356666677754        577888888888888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.82  E-value=0.0087  Score=48.24  Aligned_cols=111  Identities=13%  Similarity=0.118  Sum_probs=77.8

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      .++.+.+++.|+-.+.+.-.|..+|..+.+... ...+.+-+.- -|++++.|...|.+++.+..++.        ....
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs--------~~w~   88 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS--------QIWN   88 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchh--------heee
Confidence            456666899999999999999999987654322 2223222221 57889999999999999998775        2333


Q ss_pred             eeccccce-EEEEEcCCCCEEEEEeCCCcEEEEecCccccccC
Q 013578          295 LKGHKSAV-TWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE  336 (440)
Q Consensus       295 ~~~h~~~v-~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~  336 (440)
                      +... +.| ......+++..+..++.|++.+..|.++..++..
T Consensus        89 f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen   89 FVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             eeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence            3221 122 2234567899999999999999999997766543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.82  E-value=0.024  Score=51.41  Aligned_cols=53  Identities=19%  Similarity=0.264  Sum_probs=38.2

Q ss_pred             eeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          357 QYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       357 ~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      ++..++.||+|+++|.-. +|.+.+....-.+.+..+...-......+.|+.+.
T Consensus       218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            588999999999999754 68888887665555555433334567788887764

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.82  E-value=0.0013  Score=59.52  Aligned_cols=142  Identities=12%  Similarity=0.263  Sum_probs=80.7

Q ss_pred             CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 013578          247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW  326 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iw  326 (440)
                      ........+.++|+|++++++ .||.-.||......        .     ...+.-..+.|.++++ +|+-...++|.|+
T Consensus        30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--------~-----k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~   94 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--------N-----KAFGSGLSFVWSSRNR-YAVLESSSTIKIY   94 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--------E-----EEEEE-SEEEE-TSSE-EEEE-TTS-EEEE
T ss_pred             CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--------c-----cccCceeEEEEecCcc-EEEEECCCeEEEE
Confidence            334457889999999999994 57877777721100        1     1123446788988555 6777668899996


Q ss_pred             -ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578          327 -NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAW  405 (440)
Q Consensus       327 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~  405 (440)
                       ++....        ...+..     ..   .+..+-.   |.+|...+++.|.+||..+++.+.++.  . .+|..|.|
T Consensus        95 kn~~~~~--------~k~i~~-----~~---~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~--v-~~vk~V~W  152 (443)
T PF04053_consen   95 KNFKNEV--------VKSIKL-----PF---SVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRID--V-SAVKYVIW  152 (443)
T ss_dssp             ETTEE-T--------T----------SS----EEEEE----SSSEEEEETTEEEEE-TTT--EEEEES--S--E-EEEEE
T ss_pred             EcCcccc--------ceEEcC-----Cc---ccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEe--c-CCCcEEEE
Confidence             443211        001110     00   1222222   888888888899999999999999884  2 24999999


Q ss_pred             cCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          406 APKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ++++        .+++-.+.| .+.|++.
T Consensus       153 s~~g--------~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  153 SDDG--------ELVALVTKD-SIYILKY  172 (443)
T ss_dssp             -TTS--------SEEEEE-S--SEEEEEE
T ss_pred             ECCC--------CEEEEEeCC-eEEEEEe
Confidence            9998        788887755 5777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=97.78  E-value=8.2e-05  Score=41.33  Aligned_cols=37  Identities=38%  Similarity=0.790  Sum_probs=32.7

Q ss_pred             eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      ....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4555667889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.77  E-value=0.015  Score=47.70  Aligned_cols=197  Identities=16%  Similarity=0.212  Sum_probs=103.1

Q ss_pred             CCCCCeEEEEeeC-----CceEEEEeCCCC-ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEE-Ee-------Ee
Q 013578          215 TADGSTIIASCSE-----GTDISIWHGKTG-KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW-EI-------VY  280 (440)
Q Consensus       215 ~~~~~~~l~s~~~-----d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~-d~-------~~  280 (440)
                      ++||. +|+..-+     -|.|-+||.+.+ +.+.++..+......+.+.+||+.++++.  |-|... |.       ..
T Consensus       122 s~dG~-~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNlds  198 (366)
T COG3490         122 SPDGR-LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDS  198 (366)
T ss_pred             CCCCc-EEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhh
Confidence            56666 4433322     367889998754 45677777777778899999999998874  334433 21       11


Q ss_pred             cCCCce------eeeeeeeeee--ccccceEEEEEcCCCCEEEEEeCCCc-----EEEEecCccccccCCCCcccccccc
Q 013578          281 SKDGLV------KAVTSVMQLK--GHKSAVTWLCFAPNSEQIITASKDGT-----LRVWNINVRYHLDEDPKTLKVLPIP  347 (440)
Q Consensus       281 ~~~~~~------~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~  347 (440)
                      .+...+      -..-..+++.  -+.-.|..++..+||+.++-+-..|.     -.+=-...+       .....+..+
T Consensus       199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g-------~~l~~~~~p  271 (366)
T COG3490         199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKG-------EPLEFLDLP  271 (366)
T ss_pred             cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCC-------CcCcccCCC
Confidence            110000      0000111222  34456788888888875554432221     001001111       111111111


Q ss_pred             ccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578          348 LLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       348 ~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~  425 (440)
                      ......-...|-+++.+.+..+++..+  ++...+||..+|..+....   -..+..++-...+          ++..+.
T Consensus       272 ee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~---l~daaGva~~~~g----------f~vssg  338 (366)
T COG3490         272 EEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA---LPDAAGVAAAKGG----------FAVSSG  338 (366)
T ss_pred             HHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc---ccccccceeccCc----------eEEecC
Confidence            111111122355788887777777655  6788999999999876432   1223344444443          444455


Q ss_pred             CCeEEEEeC
Q 013578          426 DKKVKLWLA  434 (440)
Q Consensus       426 Dg~i~vw~~  434 (440)
                      +|.+..+.-
T Consensus       339 ~G~~~~~s~  347 (366)
T COG3490         339 QGRIIFYSR  347 (366)
T ss_pred             CceEEeccc
Confidence            788877644

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.74  E-value=0.0012  Score=61.89  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=32.4

Q ss_pred             cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCC
Q 013578           88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDD  122 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~  122 (440)
                      ..|..+|..+.||++|..|+|+..-|.|.+|.++.
T Consensus        98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            45899999999999999999999999999999874

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.69  E-value=0.027  Score=48.42  Aligned_cols=151  Identities=15%  Similarity=0.224  Sum_probs=85.6

Q ss_pred             ccEEEecCCCCeEEEEec---------CCCEEEEEeEe-cCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC-C
Q 013578          252 NNMAAISPNGRFLAAAAF---------TADVKVWEIVY-SKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK-D  320 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~---------dg~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-d  320 (440)
                      .+...+.|+|.+.+....         ...-.+|.+.. +.        ....+..+-..-++|+||||++.|+.+.. .
T Consensus       113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~--------~~~l~~~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG--------VVRLLDDDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC--------EEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence            455677788776655443         11124555442 21        23333344445578999999987776654 4


Q ss_pred             CcEEEEecCc-cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C-CEEEEEEcCCccchhhhhcccc
Q 013578          321 GTLRVWNINV-RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G-STLQWLSVETGKVLDTAEKAHE  397 (440)
Q Consensus       321 g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~h~  397 (440)
                      +.|.-|++.. .-...  .. ..     ...........-.++...+|.+.+++. + +.|.+|+.. |+++..+. -..
T Consensus       185 ~~i~r~~~d~~~g~~~--~~-~~-----~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~-lP~  254 (307)
T COG3386         185 NRIHRYDLDPATGPIG--GR-RG-----FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK-LPV  254 (307)
T ss_pred             CeEEEEecCcccCccC--Cc-ce-----EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE-CCC
Confidence            7788887763 11100  00 00     000001112223577788888775443 3 499999999 88888774 444


Q ss_pred             CCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578          398 GEITCMAWAPKTIPMGNQQVSVLATSSVD  426 (440)
Q Consensus       398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~D  426 (440)
                      ..+++++|--..     .+ .+++|+...
T Consensus       255 ~~~t~~~FgG~~-----~~-~L~iTs~~~  277 (307)
T COG3386         255 KRPTNPAFGGPD-----LN-TLYITSARS  277 (307)
T ss_pred             CCCccceEeCCC-----cC-EEEEEecCC
Confidence            778899997531     11 566666554

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.66  E-value=0.0036  Score=59.06  Aligned_cols=181  Identities=19%  Similarity=0.218  Sum_probs=96.1

Q ss_pred             CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe------cCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA------FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA  301 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~  301 (440)
                      +|.+.-.+-..-..+....+....+...+++|+|+.++...      .|+.-.||-...+..       ......+.  .
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-------~~~lt~g~--~  398 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-------AVQVLEGH--S  398 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-------ceeeecCC--C
Confidence            55555544322222222222223567889999999988776      244445554433221       11112222  3


Q ss_pred             eEEEEEcCCCCEEEEEeCC-CcEEEEecCccccccCCCCcccccccc--ccCCCCCeeeeeeEEeCCCCCEEEEecCCEE
Q 013578          302 VTWLCFAPNSEQIITASKD-GTLRVWNINVRYHLDEDPKTLKVLPIP--LLDSNGATLQYDRLSLSSDGKILAATHGSTL  378 (440)
Q Consensus       302 v~~~~~~p~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i  378 (440)
                      .+.-.|+|+|..|++.+.. ..+++.+-.....+       ......  .... .....|..+.|||||..++.-.++.|
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql-------~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~g~v  470 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL-------ARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIGGKV  470 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceE-------EEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEECCEE
Confidence            7788999999888777533 12233222111000       000000  0000 11234889999999999988767888


Q ss_pred             EE---EEcCCccc-h---hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          379 QW---LSVETGKV-L---DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       379 ~i---~d~~~~~~-~---~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ++   -....|+. +   ..+...-...+.++.|..++        . |+.+..++...+|.+
T Consensus       471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~--------~-L~V~~~~~~~~v~~v  524 (591)
T PRK13616        471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD--------S-LVVGRSDPEHPVWYV  524 (591)
T ss_pred             EEEEEEeCCCCceeecccEEeecccCCccccceEecCC--------E-EEEEecCCCCceEEE
Confidence            77   45455541 1   11211223346889999997        5 456566655556654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.64  E-value=0.041  Score=49.05  Aligned_cols=256  Identities=12%  Similarity=0.124  Sum_probs=123.8

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC--------------CCCCceEEEccCCCeEEEE
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP--------------GGPPTAVAFADNATSIVVA  156 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~--------------~~~v~~v~~~~~~~~l~~~  156 (440)
                      ...+....|||||+.+|... ++.|.+++..++...  ++.......              -+.-..+.|+||+++|+..
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~--~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~  118 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET--QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL  118 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE--ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE--EeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence            56799999999999999885 567999987665211  111100000              1234689999999999998


Q ss_pred             eecCCcceE-EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCc--eEEE
Q 013578          157 THNLSGCSL-YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGT--DISI  233 (440)
Q Consensus       157 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~i~v  233 (440)
                      ..|...... .+........                       .........             +-..|...-  .+.+
T Consensus       119 ~~d~~~v~~~~~~~~~~~~~-----------------------~yp~~~~~~-------------YPk~G~~np~v~l~v  162 (353)
T PF00930_consen  119 RFDEREVPEYPLPDYSPPDS-----------------------QYPEVESIR-------------YPKAGDPNPRVSLFV  162 (353)
T ss_dssp             EEE-TTS-EEEEEEESSSTE-----------------------SS-EEEEEE---------------BTTS---EEEEEE
T ss_pred             EECCcCCceEEeeccCCccc-----------------------cCCcccccc-------------cCCCCCcCCceEEEE
Confidence            877433222 1111111000                       000000000             000111111  3677


Q ss_pred             EeCCCCceee-e-e---eCCCCcccEEEecCCCCeEEEEe--cCCC---EEEEEeEecCCCceeeeeeeeeeeccccce-
Q 013578          234 WHGKTGKLLG-N-V---DTNQLKNNMAAISPNGRFLAAAA--FTAD---VKVWEIVYSKDGLVKAVTSVMQLKGHKSAV-  302 (440)
Q Consensus       234 wd~~~~~~~~-~-~---~~~~~~v~~~~~s~~~~~l~~~~--~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v-  302 (440)
                      +|+.+++... . .   ......+..+.|.++++.|++.-  .+.+   +.++|...+..   .   .+. .....++| 
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~---~---~~~-~e~~~~Wv~  235 (353)
T PF00930_consen  163 VDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET---R---VVL-EETSDGWVD  235 (353)
T ss_dssp             EESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC---E---EEE-EEESSSSSS
T ss_pred             EECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce---e---EEE-EecCCccee
Confidence            8888776532 1 1   23455678899999998444433  2322   44455533321   1   111 11122333 


Q ss_pred             --EEEEEc-CCCC-EEEEEeCCCcEEEEec--CccccccCCCCccccccccccCCCCCeeee-eeEEeCCCCCEEEE-ec
Q 013578          303 --TWLCFA-PNSE-QIITASKDGTLRVWNI--NVRYHLDEDPKTLKVLPIPLLDSNGATLQY-DRLSLSSDGKILAA-TH  374 (440)
Q Consensus       303 --~~~~~~-p~~~-~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~-~~  374 (440)
                        ....|. +++. +|.....||--+||-+  ..+..        +.       .......| .-+.++++++.|.. +.
T Consensus       236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~--------~~-------lT~G~~~V~~i~~~d~~~~~iyf~a~  300 (353)
T PF00930_consen  236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP--------RQ-------LTSGDWEVTSILGWDEDNNRIYFTAN  300 (353)
T ss_dssp             SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE--------EE-------SS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred             eecccccccCCCCEEEEEEEcCCCcEEEEEcccccce--------ec-------cccCceeecccceEcCCCCEEEEEec
Confidence              345554 6555 4445557776555544  33221        10       11112234 34778888775543 32


Q ss_pred             -----CCEEEEEEcC-CccchhhhhccccCCeEEEEecCCC
Q 013578          375 -----GSTLQWLSVE-TGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       375 -----~~~i~i~d~~-~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                           ...|+..++. .++. ..+. ...+.-..+.|+|++
T Consensus       301 ~~~p~~r~lY~v~~~~~~~~-~~LT-~~~~~~~~~~~Spdg  339 (353)
T PF00930_consen  301 GDNPGERHLYRVSLDSGGEP-KCLT-CEDGDHYSASFSPDG  339 (353)
T ss_dssp             SGGTTSBEEEEEETTETTEE-EESS-TTSSTTEEEEE-TTS
T ss_pred             CCCCCceEEEEEEeCCCCCe-Eecc-CCCCCceEEEECCCC
Confidence                 2466666777 4433 3332 122222799999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.044  Score=49.33  Aligned_cols=164  Identities=17%  Similarity=0.212  Sum_probs=100.4

Q ss_pred             CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578          227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL  305 (440)
Q Consensus       227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~  305 (440)
                      .++++.+.|..+++.+........+ ..++++|+|+.+++.. .++.|.+.|.....-   .. ........-...-..+
T Consensus       138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v---~~-~~~~~~~~~~~~P~~i  212 (381)
T COG3391         138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV---VR-GSVGSLVGVGTGPAGI  212 (381)
T ss_pred             CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce---ec-cccccccccCCCCceE
Confidence            3677888888888887776554444 7899999999777776 688899999543320   00 0000011122334678


Q ss_pred             EEcCCCCEEEEEeCC---CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEE
Q 013578          306 CFAPNSEQIITASKD---GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQW  380 (440)
Q Consensus       306 ~~~p~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i  380 (440)
                      .++|+|.++......   +.+...|..++.......        +    .+.. ....+..+|+|.++.+..  .+.+.+
T Consensus       213 ~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~--------~----~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         213 AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL--------P----VGSG-APRGVAVDPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             EECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc--------c----cccC-CCCceeECCCCCEEEEEecCCCeEEE
Confidence            899999976655433   588888887654322100        0    0011 123588999999887764  588999


Q ss_pred             EEcCCccchhhhhcc--ccCCeEEEEecCC
Q 013578          381 LSVETGKVLDTAEKA--HEGEITCMAWAPK  408 (440)
Q Consensus       381 ~d~~~~~~~~~~~~~--h~~~v~~v~~~~~  408 (440)
                      .|..+.+.......+  -...+..+++.+.
T Consensus       280 id~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         280 IDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             EeCCCCceeeeecccccccccceeccceee
Confidence            998887766544211  1123455555544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.61  E-value=0.033  Score=49.68  Aligned_cols=245  Identities=18%  Similarity=0.164  Sum_probs=115.4

Q ss_pred             ccCCCEEEEee---------CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578          100 SSDGKCLATAC---------ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE  170 (440)
Q Consensus       100 s~dg~~l~t~s---------~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~  170 (440)
                      |||+++++...         ..+.+.|||+.++.....      ......+....|+|+|+.++.+...    .|++.+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l------~~~~~~~~~~~~sP~g~~~~~v~~~----nly~~~~   70 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL------TPPPPKLQDAKWSPDGKYIAFVRDN----NLYLRDL   70 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES------S-EETTBSEEEE-SSSTEEEEEETT----EEEEESS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC------cCCccccccceeecCCCeeEEEecC----ceEEEEC
Confidence            68888877642         346788999987643211      1114678899999999998887643    4555443


Q ss_pred             ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-C
Q 013578          171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-Q  249 (440)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~  249 (440)
                      ......                                            .|...+..+ |.     .|..-..++.. -
T Consensus        71 ~~~~~~--------------------------------------------~lT~dg~~~-i~-----nG~~dwvyeEEv~  100 (353)
T PF00930_consen   71 ATGQET--------------------------------------------QLTTDGEPG-IY-----NGVPDWVYEEEVF  100 (353)
T ss_dssp             TTSEEE--------------------------------------------ESES--TTT-EE-----ESB--HHHHHHTS
T ss_pred             CCCCeE--------------------------------------------Eecccccee-EE-----cCccceecccccc
Confidence            221000                                            011111000 10     01110000000 1


Q ss_pred             CcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578          250 LKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI  328 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~  328 (440)
                      ..-..+.||||+++|+.... +..|..+.+........           ..-.+..+.+-.-|.--.    .-.+.++|+
T Consensus       101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-----------~yp~~~~~~YPk~G~~np----~v~l~v~~~  165 (353)
T PF00930_consen  101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-----------QYPEVESIRYPKAGDPNP----RVSLFVVDL  165 (353)
T ss_dssp             SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-----------SS-EEEEEE--BTTS-------EEEEEEEES
T ss_pred             ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-----------cCCcccccccCCCCCcCC----ceEEEEEEC
Confidence            22356899999999987754 45566666532221000           001233444322222111    114566777


Q ss_pred             CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEe-c----CCEEEEEEcCCccchhhhhccccCC---
Q 013578          329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAAT-H----GSTLQWLSVETGKVLDTAEKAHEGE---  399 (440)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~-~----~~~i~i~d~~~~~~~~~~~~~h~~~---  399 (440)
                      .+++..        .+..+. .......-+..+.|.++++ +++.- +    ...+.++|..+++..........+-   
T Consensus       166 ~~~~~~--------~~~~~~-~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~  236 (353)
T PF00930_consen  166 ASGKTT--------ELDPPN-SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV  236 (353)
T ss_dssp             SSTCCC--------EE---H-HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred             CCCcEE--------Eeeecc-ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence            655321        111110 0012245578999999999 44432 2    1366778888776543332222222   


Q ss_pred             eEEEEec-CCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          400 ITCMAWA-PKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       400 v~~v~~~-~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      -....|. +++.       .+|.....||--+||-++
T Consensus       237 ~~~~~~~~~~~~-------~~l~~s~~~G~~hly~~~  266 (353)
T PF00930_consen  237 YDPPHFLGPDGN-------EFLWISERDGYRHLYLYD  266 (353)
T ss_dssp             SSEEEE-TTTSS-------EEEEEEETTSSEEEEEEE
T ss_pred             ecccccccCCCC-------EEEEEEEcCCCcEEEEEc
Confidence            2344544 4431       566666677776665543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.0004  Score=62.65  Aligned_cols=77  Identities=17%  Similarity=0.306  Sum_probs=65.6

Q ss_pred             CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE-EEEEcCCCCEEEEEeCCCcEEEEec
Q 013578          250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT-WLCFAPNSEQIITASKDGTLRVWNI  328 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~~~dg~i~iwd~  328 (440)
                      ..+..+.|+|.-..+|.+..+|.|.++.++.         +.+.++.-|...++ +++|.|||+.||.|-.||+|++.|+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv   91 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW---------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV   91 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEecc---------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence            3467789999999999999999999998762         25666766777777 9999999999999999999999999


Q ss_pred             Ccccccc
Q 013578          329 NVRYHLD  335 (440)
Q Consensus       329 ~~~~~~~  335 (440)
                      +++..+.
T Consensus        92 e~~~~l~   98 (665)
T KOG4640|consen   92 EKGGRLV   98 (665)
T ss_pred             cCCCcee
Confidence            9876654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.60  E-value=0.0042  Score=54.56  Aligned_cols=180  Identities=14%  Similarity=0.141  Sum_probs=100.9

Q ss_pred             eEEEEeCCCCceeeeeeCCC-CcccEE---EecCC----CCeEEEEec---------C-CCEEEEEeEecCCCceeeeee
Q 013578          230 DISIWHGKTGKLLGNVDTNQ-LKNNMA---AISPN----GRFLAAAAF---------T-ADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~-~~v~~~---~~s~~----~~~l~~~~~---------d-g~i~i~d~~~~~~~~~~~~~~  291 (440)
                      .|++.|..+.+.+..+.... ..+.++   .+..+    ..+|++|+.         . |.|.+|++.... ........
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~-~~~~~l~~   81 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP-ENNFKLKL   81 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------EEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc-ccceEEEE
Confidence            48888888888776654322 233433   33332    567887763         2 889999997641 00112223


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                      +... ...++|++++-- ++. |+.+. .+.|.+|++.....+         .........   ..+.++.  ..+.+++
T Consensus        82 i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l---------~~~~~~~~~---~~i~sl~--~~~~~I~  143 (321)
T PF03178_consen   82 IHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTL---------LKKAFYDSP---FYITSLS--VFKNYIL  143 (321)
T ss_dssp             EEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSE---------EEEEEE-BS---SSEEEEE--EETTEEE
T ss_pred             EEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccc---------hhhheecce---EEEEEEe--ccccEEE
Confidence            3333 357889998876 444 44444 469999999865411         111111111   1233333  3355888


Q ss_pred             Eec-CCEEEEEEcCC-ccchhhh-hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          372 ATH-GSTLQWLSVET-GKVLDTA-EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       372 ~~~-~~~i~i~d~~~-~~~~~~~-~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +|+ ...+.++.... ...+..+ .......++++.|-+++        ..++.+..+|.+.++..+.
T Consensus       144 vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~--------~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  144 VGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE--------DTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS--------SEEEEEETTSEEEEEEE-S
T ss_pred             EEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC--------cEEEEEcCCCeEEEEEECC
Confidence            876 56666664332 2222222 12234468899998775        5899999999999998874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.53  E-value=0.069  Score=48.92  Aligned_cols=261  Identities=14%  Similarity=0.096  Sum_probs=126.0

Q ss_pred             cceeEEEEccCCCEEEEe-eCC----CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           92 DSVTGLCFSSDGKCLATA-CAD----GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~-s~d----g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      -.+...++||||++||.+ +..    .++++.|+.++......+..      .....+.|.++++.++....+...    
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~------~~~~~~~W~~d~~~~~y~~~~~~~----  193 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN------PKFSSVSWSDDGKGFFYTRFDEDQ----  193 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE------EESEEEEECTTSSEEEEEECSTTT----
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc------cccceEEEeCCCCEEEEEEeCccc----
Confidence            345578999999998865 333    35999999987432111111      112338999998887766544100    


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee--ee
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL--GN  244 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~  244 (440)
                                                                        .+  -  .......|+.|.+.+...-  ..
T Consensus       194 --------------------------------------------------~~--~--~~~~~~~v~~~~~gt~~~~d~lv  219 (414)
T PF02897_consen  194 --------------------------------------------------RT--S--DSGYPRQVYRHKLGTPQSEDELV  219 (414)
T ss_dssp             --------------------------------------------------SS-----CCGCCEEEEEEETTS-GGG-EEE
T ss_pred             --------------------------------------------------cc--c--cCCCCcEEEEEECCCChHhCeeE
Confidence                                                              00  0  1223445777777665322  22


Q ss_pred             eeCCCCc--ccEEEecCCCCeEEEEecCC----CEEEEEeEecCCCceeeeeeeeeeeccccceE-EEEEcCCCCEEEEE
Q 013578          245 VDTNQLK--NNMAAISPNGRFLAAAAFTA----DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT-WLCFAPNSEQIITA  317 (440)
Q Consensus       245 ~~~~~~~--v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~  317 (440)
                      +......  ...+..++++++|+.....+    .+.+.++....... .   ....+......+. .+... .+.+++..
T Consensus       220 fe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~-~---~~~~l~~~~~~~~~~v~~~-~~~~yi~T  294 (414)
T PF02897_consen  220 FEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD-A---KPKLLSPREDGVEYYVDHH-GDRLYILT  294 (414)
T ss_dssp             EC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-----SEEEEEESSSS-EEEEEEE-TTEEEEEE
T ss_pred             EeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc-C---CcEEEeCCCCceEEEEEcc-CCEEEEee
Confidence            3332222  34678899999988765433    35666654431000 1   1222222333333 33333 44444433


Q ss_pred             e---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cC--CEEEEEEcCCccchh
Q 013578          318 S---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HG--STLQWLSVETGKVLD  390 (440)
Q Consensus       318 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~--~~i~i~d~~~~~~~~  390 (440)
                      .   .++.|.-.++......     ....    ..........+..+..  .+.+|+..  .+  ..|++++...+....
T Consensus       295 n~~a~~~~l~~~~l~~~~~~-----~~~~----~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~  363 (414)
T PF02897_consen  295 NDDAPNGRLVAVDLADPSPA-----EWWT----VLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESR  363 (414)
T ss_dssp             -TT-TT-EEEEEETTSTSGG-----GEEE----EEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred             CCCCCCcEEEEecccccccc-----ccee----EEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence            2   2345666666643210     0000    1111111122333443  34444442  23  478999998333333


Q ss_pred             hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC---CCeEEEEeCCCCCC
Q 013578          391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV---DKKVKLWLAPSLES  439 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~---Dg~i~vw~~~~~~~  439 (440)
                      .+...-.+.|..+...++.      + .+.++-++   -+++..||+.+++.
T Consensus       364 ~~~~p~~g~v~~~~~~~~~------~-~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  364 EIPLPEAGSVSGVSGDFDS------D-ELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEESSSSSEEEEEES-TT-------S-EEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             eecCCcceEEeccCCCCCC------C-EEEEEEeCCCCCCEEEEEECCCCCE
Confidence            3322334456666655554      1 34444443   46788888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.53  E-value=0.033  Score=45.06  Aligned_cols=140  Identities=14%  Similarity=0.062  Sum_probs=79.5

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccccccccc
Q 013578          103 GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ  182 (440)
Q Consensus       103 g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (440)
                      ..+++.||..+.+.--|..++...      .....+..+.+-+.. -|++++.+..++.   +++......         
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~------We~ilg~RiE~sa~v-vgdfVV~GCy~g~---lYfl~~~tG---------   83 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLI------WEAILGVRIECSAIV-VGDFVVLGCYSGG---LYFLCVKTG---------   83 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEE------eehhhCceeeeeeEE-ECCEEEEEEccCc---EEEEEecch---------
Confidence            356777888888877777766532      111122334333333 4556777776633   333332222         


Q ss_pred             CCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC
Q 013578          183 SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR  262 (440)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  262 (440)
                            ...|........+..        ....+++. ++..++.|++.+..|.++..++...+.......+-++.|-..
T Consensus        84 ------s~~w~f~~~~~vk~~--------a~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~  148 (354)
T KOG4649|consen   84 ------SQIWNFVILETVKVR--------AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG  148 (354)
T ss_pred             ------hheeeeeehhhhccc--------eEEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCc
Confidence                  112222211111111        11245666 899999999999999999999988776655555566777445


Q ss_pred             eEEEEecCCCEEEE
Q 013578          263 FLAAAAFTADVKVW  276 (440)
Q Consensus       263 ~l~~~~~dg~i~i~  276 (440)
                      .|+.+...|.+.--
T Consensus       149 sly~a~t~G~vlav  162 (354)
T KOG4649|consen  149 SLYAAITAGAVLAV  162 (354)
T ss_pred             eEEEEeccceEEEE
Confidence            55666666655433

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.51  E-value=0.019  Score=51.94  Aligned_cols=183  Identities=17%  Similarity=0.131  Sum_probs=93.5

Q ss_pred             eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578          230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP  309 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  309 (440)
                      .|++|+.. |+.+.++.-..+.+.++.|+.+.+ |++...||.+++||+....  ...-...+....-....+....+..
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCC
Confidence            59999865 778877766568899999988654 5566689999999984221  0000001111111222333334444


Q ss_pred             CCCEEEEEeCCCcEEEEe-cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE-EEecCCEEEEEEcCCcc
Q 013578          310 NSEQIITASKDGTLRVWN-INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGK  387 (440)
Q Consensus       310 ~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~~~i~i~d~~~~~  387 (440)
                      +|-.+.+  .++.+.+.+ ..........+.    .+.................++.+.... ....++.+.+.+....+
T Consensus       138 ~GivvLt--~~~~~~~v~n~~~~~~~~~~~~----~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~  211 (410)
T PF04841_consen  138 NGIVVLT--GNNRFYVVNNIDEPVKLRRLPE----IPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK  211 (410)
T ss_pred             CCEEEEC--CCCeEEEEeCccccchhhcccc----CCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence            5533333  344443332 221101000000    000000000000000012344444433 33456677755543332


Q ss_pred             chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       388 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      .   +  ...+++..|+.||++        ++||.-..+|.+.|...+
T Consensus       212 ~---i--~~~~~i~~iavSpng--------~~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  212 Q---I--DSDGPIIKIAVSPNG--------KFIALFTDSGNLWVVSSD  246 (410)
T ss_pred             c---c--cCCCCeEEEEECCCC--------CEEEEEECCCCEEEEECc
Confidence            2   2  134689999999998        888888889998887643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.0066  Score=54.04  Aligned_cols=150  Identities=17%  Similarity=0.161  Sum_probs=99.3

Q ss_pred             CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC-------eEEEEecCCCEEEEEeEecCCCceee
Q 013578          216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR-------FLAAAAFTADVKVWEIVYSKDGLVKA  288 (440)
Q Consensus       216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~  288 (440)
                      .+.+.++.++.....++-.|++.|+.+..+..+.. |+.+.+.|+.+       .-++|-.|..|.-||.+..... ...
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~  420 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLA  420 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eee
Confidence            34444566666667799999999999999988765 78888888653       2345667888999998754311 111


Q ss_pred             eeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578          289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK  368 (440)
Q Consensus       289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  368 (440)
                      +..-+.+. ....-.|.+-..+| +++.||.+|.||+||-- +..-             ....++-..+|..+..+.+|+
T Consensus       421 ~~q~kqy~-~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~A-------------KTAlPgLG~~I~hVdvtadGK  484 (644)
T KOG2395|consen  421 VVQSKQYS-TKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRA-------------KTALPGLGDAIKHVDVTADGK  484 (644)
T ss_pred             eeeccccc-cccccceeeecCCc-eEEEeecCCcEEeehhh-hhhh-------------hhcccccCCceeeEEeeccCc
Confidence            11111221 12234556555444 69999999999999963 2111             111223345688899999999


Q ss_pred             EEEEecCCEEEEEEc
Q 013578          369 ILAATHGSTLQWLSV  383 (440)
Q Consensus       369 ~l~~~~~~~i~i~d~  383 (440)
                      ++++..+..+.+.++
T Consensus       485 wil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  485 WILATCKTYLLLIDT  499 (644)
T ss_pred             EEEEecccEEEEEEE
Confidence            999988888877765

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.48  E-value=0.07  Score=47.76  Aligned_cols=83  Identities=11%  Similarity=0.110  Sum_probs=54.6

Q ss_pred             eeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCC-eEEEEecCCCCC--------C-CC-CcceEEEE
Q 013578          355 TLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGE-ITCMAWAPKTIP--------M-GN-QQVSVLAT  422 (440)
Q Consensus       355 ~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~--------~-~~-~~~~~l~t  422 (440)
                      ...+.+++.+|++++.|+.+ -|.|.++|+.++..++..+ |..+. +.-+........        . .. ...-+++-
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK-GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK-GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc-cCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            34577899999999988876 4999999999999988874 54432 222221111100        0 00 01135566


Q ss_pred             eeCCCeEEEEeCCCCC
Q 013578          423 SSVDKKVKLWLAPSLE  438 (440)
Q Consensus       423 ~~~Dg~i~vw~~~~~~  438 (440)
                      +-.-|.|-||.+..+.
T Consensus       386 aprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  386 APRRGILEVWSMRQGP  401 (415)
T ss_pred             eccCCeEEEEecCCCC
Confidence            7779999999998874

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.48  E-value=0.013  Score=40.91  Aligned_cols=95  Identities=19%  Similarity=0.284  Sum_probs=64.8

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      ..+|...|+.|+.|..|++|+-  .+.+.++.. ...+++++-... ..|+.+..+|+|-+|+-..          .+..
T Consensus        11 d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~----------RlWR   76 (111)
T PF14783_consen   11 DGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ----------RLWR   76 (111)
T ss_pred             CCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc----------eeee
Confidence            4566678999999999999974  456666665 456777766655 6688999999999998522          2223


Q ss_pred             eeccccceEEEEEcC-C--C-CEEEEEeCCCcEE
Q 013578          295 LKGHKSAVTWLCFAP-N--S-EQIITASKDGTLR  324 (440)
Q Consensus       295 ~~~h~~~v~~~~~~p-~--~-~~l~s~~~dg~i~  324 (440)
                      .+. +..++++.+.. +  | .-|++|-.+|.|-
T Consensus        77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            332 23366665543 3  2 2588888888764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.46  E-value=0.061  Score=47.27  Aligned_cols=98  Identities=17%  Similarity=0.152  Sum_probs=62.4

Q ss_pred             CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF  307 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (440)
                      ++.|.+|++...+.+..................++++++|+....+.++.++...    .....+.. ......++++.|
T Consensus       106 g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~----~~l~~va~-d~~~~~v~~~~~  180 (321)
T PF03178_consen  106 GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN----NKLILVAR-DYQPRWVTAAEF  180 (321)
T ss_dssp             TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT----E-EEEEEE-ESS-BEEEEEEE
T ss_pred             cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccC----CEEEEEEe-cCCCccEEEEEE
Confidence            3568899888776222222223333445555557799999999999999776422    11112221 223456889999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCc
Q 013578          308 APNSEQIITASKDGTLRVWNINV  330 (440)
Q Consensus       308 ~p~~~~l~s~~~dg~i~iwd~~~  330 (440)
                      -++++.++.+..+|.+.++....
T Consensus       181 l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  181 LVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             E-SSSEEEEEETTSEEEEEEE-S
T ss_pred             ecCCcEEEEEcCCCeEEEEEECC
Confidence            87777899999999999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.00065  Score=61.34  Aligned_cols=94  Identities=24%  Similarity=0.349  Sum_probs=70.3

Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeee-eeEEeCCCCCEEEEec-CC
Q 013578          299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY-DRLSLSSDGKILAATH-GS  376 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~-~~  376 (440)
                      ...|.-+.|+|.-..+|.+..+|.|.+..++-. .+         ..++..     ...+ .+++|.|||++||+|- ||
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-Rl---------wtip~p-----~~~v~~sL~W~~DGkllaVg~kdG   84 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-RL---------WTIPIP-----GENVTASLCWRPDGKLLAVGFKDG   84 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEeccc-ee---------EeccCC-----CCccceeeeecCCCCEEEEEecCC
Confidence            345778999999999999999999988777621 11         111111     1123 4899999999999996 99


Q ss_pred             EEEEEEcCCccchhhhhccccCCeEEEEecC
Q 013578          377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAP  407 (440)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~  407 (440)
                      +|++.|++++..+......-...|.++.|.+
T Consensus        85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   85 TIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eEEEEEccCCCceeccccccccchheeeccc
Confidence            9999999999988774334667788888864

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.37  E-value=0.0024  Score=56.96  Aligned_cols=236  Identities=11%  Similarity=0.111  Sum_probs=97.4

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEE---ecCCCCCCCceEEEcc-----CC---
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLR---INLPPGGPPTAVAFAD-----NA---  150 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~---~~~~~~~~v~~v~~~~-----~~---  150 (440)
                      .+...++...++|++++.|. =.++|.|..+|.+.|.|++...-.....+.   ........++++.|.-     |+   
T Consensus        77 ~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS  155 (395)
T PF08596_consen   77 LPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS  155 (395)
T ss_dssp             EEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred             CchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence            34555666699999999984 459999999999999999654321110000   0111234577788862     22   


Q ss_pred             CeEEEEeecCCcceEEeecccccccccccccc-CCCCCCceeecccccccceeEEEeec-ccccccCCCCCeEEEEeeCC
Q 013578          151 TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ-SKLPGPEIKWEHHKVHDKRAILTLFG-ASATYGTADGSTIIASCSEG  228 (440)
Q Consensus       151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d  228 (440)
                      -.+++++..+....+.+.-............. .....+.................... .....--..-..+++.++ +
T Consensus       156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e  234 (395)
T PF08596_consen  156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-E  234 (395)
T ss_dssp             EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--S
T ss_pred             eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-c
Confidence            24445555433333333311111110000000 00001110000000000000000000 000000001122455555 4


Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEe-----cCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec----cc
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAI-----SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG----HK  299 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----h~  299 (440)
                      ..++++...+.+..............+.+     ...+..|++-..+|.|++|.+..-+        .+..++-    ..
T Consensus       235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk--------ei~~~~l~~~~d~  306 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK--------EIKSVSLPPPLDS  306 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT----------EEEEEE-SS---H
T ss_pred             cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch--------HhhcccCCCcccc
Confidence            45999999888776555422122233344     2356788888999999999985433        2333222    22


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578          300 SAVTWLCFAPNSEQIITASKDGTLRVWNI  328 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~  328 (440)
                      ..+....++++|+.++-.+.. .+.++.+
T Consensus       307 ~~~~~ssis~~Gdi~~~~gps-E~~l~sv  334 (395)
T PF08596_consen  307 RRLSSSSISRNGDIFYWTGPS-EIQLFSV  334 (395)
T ss_dssp             HHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred             ccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence            234556778888877666543 4444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.37  E-value=0.007  Score=58.21  Aligned_cols=140  Identities=14%  Similarity=0.094  Sum_probs=91.1

Q ss_pred             ecCCCEEEEEeEecCCCceeeeeeeeeeeccccc-eEEEEEcC-----CCCEEEEEeCCCcEEEEecCccccccCCCCcc
Q 013578          268 AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA-VTWLCFAP-----NSEQIITASKDGTLRVWNINVRYHLDEDPKTL  341 (440)
Q Consensus       268 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  341 (440)
                      .....|+-.|+..++        .+..+..|... |..++-..     .....+.|-.+..+..||.|-...     ...
T Consensus       501 ~~~~~ly~mDLe~GK--------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-----k~v  567 (794)
T PF08553_consen  501 NNPNKLYKMDLERGK--------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-----KLV  567 (794)
T ss_pred             CCCCceEEEecCCCc--------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-----cee
Confidence            345778888887776        66777766643 55443221     123456677788999999984320     000


Q ss_pred             ccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEE
Q 013578          342 KVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA  421 (440)
Q Consensus       342 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~  421 (440)
                         . ...........++|++-+.+|.+.+++.+|.||+||. .|+...+...+-..+|.+|..+.||        ++|+
T Consensus       568 ---~-~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DG--------kwil  634 (794)
T PF08553_consen  568 ---D-SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADG--------KWIL  634 (794)
T ss_pred             ---e-ccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCC--------cEEE
Confidence               0 0011112334577888888998877778999999995 4454555545677899999999998        6666


Q ss_pred             EeeCCCeEEEEeC
Q 013578          422 TSSVDKKVKLWLA  434 (440)
Q Consensus       422 t~~~Dg~i~vw~~  434 (440)
                      ..+ +..+.+++.
T Consensus       635 aTc-~tyLlLi~t  646 (794)
T PF08553_consen  635 ATC-KTYLLLIDT  646 (794)
T ss_pred             Eee-cceEEEEEE
Confidence            555 556777665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.35  E-value=0.08  Score=45.37  Aligned_cols=154  Identities=11%  Similarity=0.126  Sum_probs=77.0

Q ss_pred             CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578          260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK  339 (440)
Q Consensus       260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  339 (440)
                      .+...++.....+|.+|..........   .....+. ....+.+++|.  ++.|+.|..+ ...+.|+.++....-...
T Consensus       103 ~~~~~L~va~kk~i~i~~~~~~~~~f~---~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~  175 (275)
T PF00780_consen  103 EGSRRLCVAVKKKILIYEWNDPRNSFS---KLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDP  175 (275)
T ss_pred             ccceEEEEEECCEEEEEEEECCccccc---ceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCc
Confidence            333444444566999999876421100   1233333 34778999997  5577777654 578889885432110000


Q ss_pred             ccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchh--hhhccccCCeEEEEecCCCCCCCCCcc
Q 013578          340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLD--TAEKAHEGEITCMAWAPKTIPMGNQQV  417 (440)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~--~~~~~h~~~v~~v~~~~~~~~~~~~~~  417 (440)
                      ....  ...........++..+.. +++.+|++.++ .-.+.|. .|+...  .+  .-...+.++++..          
T Consensus       176 ~~~~--~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~-~g~fv~~-~G~~~r~~~i--~W~~~p~~~~~~~----------  238 (275)
T PF00780_consen  176 SDSS--SSFKSRNSSSKPLGIFQL-SDNEFLLCYDN-IGVFVNK-NGEPSRKSTI--QWSSAPQSVAYSS----------  238 (275)
T ss_pred             cCCc--chhhhcccCCCceEEEEe-CCceEEEEecc-eEEEEcC-CCCcCcccEE--EcCCchhEEEEEC----------
Confidence            0000  000011111122222333 34566665433 2223333 444333  22  1334566777755          


Q ss_pred             eEEEEeeCCCeEEEEeCCCCC
Q 013578          418 SVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       418 ~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .+|+..+. +.|-||++.+++
T Consensus       239 pyli~~~~-~~iEV~~~~~~~  258 (275)
T PF00780_consen  239 PYLIAFSS-NSIEVRSLETGE  258 (275)
T ss_pred             CEEEEECC-CEEEEEECcCCc
Confidence            36666665 459999999875

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.33  E-value=0.057  Score=44.45  Aligned_cols=165  Identities=18%  Similarity=0.258  Sum_probs=93.1

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCC-CeEEEEecCCC-EEEEEeEecCCCceeeeeee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNG-RFLAAAAFTAD-VKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~  292 (440)
                      ..||+..+++.+++|.+          +..... ......++++|.- .-++.+-.-|+ -.++|....+.........-
T Consensus        44 ~~dgs~g~a~~~eaGk~----------v~~~~l-paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~  112 (366)
T COG3490          44 ARDGSFGAATLSEAGKI----------VFATAL-PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG  112 (366)
T ss_pred             ccCCceeEEEEccCCce----------eeeeec-ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC
Confidence            45666556666655543          333221 1122345666643 33444444444 45677665553322222233


Q ss_pred             eeeeccccceEEEEEcCCCCEEEEEeC-----CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQIITASK-----DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  367 (440)
                      ..+.+|.      .|||||.+|+..-.     -|.|-|||.+.+..        +.-+++.+.     ..-..+.|.+||
T Consensus       113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fq--------rvgE~~t~G-----iGpHev~lm~DG  173 (366)
T COG3490         113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ--------RVGEFSTHG-----IGPHEVTLMADG  173 (366)
T ss_pred             ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccc--------eecccccCC-----cCcceeEEecCC
Confidence            4455554      58999999987643     36799999984422        111222222     223458999999


Q ss_pred             CEEEEecCC-------------------EEEEEEcCCccchhhhhc---cccCCeEEEEecCCC
Q 013578          368 KILAATHGS-------------------TLQWLSVETGKVLDTAEK---AHEGEITCMAWAPKT  409 (440)
Q Consensus       368 ~~l~~~~~~-------------------~i~i~d~~~~~~~~~~~~---~h~~~v~~v~~~~~~  409 (440)
                      +.|+...+|                   ++.+.|..+|+++....-   -+.-.|..++..+|+
T Consensus       174 rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg  237 (366)
T COG3490         174 RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG  237 (366)
T ss_pred             cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC
Confidence            999875432                   355667777776654321   244568888888886

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.27  E-value=0.026  Score=48.40  Aligned_cols=157  Identities=13%  Similarity=0.088  Sum_probs=90.8

Q ss_pred             cCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCC
Q 013578          258 SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDED  337 (440)
Q Consensus       258 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~  337 (440)
                      ...++.|+.|+++| ++++++....       ......  +...|..+...|+-+.|++-+ |+.+.++++.........
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~-------~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~   72 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPS-------KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTS   72 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCc-------cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccc
Confidence            34678999999998 9999982221       011111  233499999999877776665 599999999865443211


Q ss_pred             CCccccccccccCCCCCeeeeeeEE---eCCCCCEEEEecCCEEEEEEcCCc-----cchhhhhccccCCeEEEEecCCC
Q 013578          338 PKTLKVLPIPLLDSNGATLQYDRLS---LSSDGKILAATHGSTLQWLSVETG-----KVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~v~~~~---~s~~g~~l~~~~~~~i~i~d~~~~-----~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      ....................+...+   -...+..|+++....|.+|.....     +....+  .-.+.+.+++|.++ 
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~~~-  149 (275)
T PF00780_consen   73 APLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--SLPDPPSSIAFLGN-  149 (275)
T ss_pred             ccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE--EcCCCcEEEEEeCC-
Confidence            1000000000000001111122233   233455777888889999887653     233443  24578999999964 


Q ss_pred             CCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          410 IPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       410 ~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                               .|+.|..++ ..+.|+.++.
T Consensus       150 ---------~i~v~~~~~-f~~idl~~~~  168 (275)
T PF00780_consen  150 ---------KICVGTSKG-FYLIDLNTGS  168 (275)
T ss_pred             ---------EEEEEeCCc-eEEEecCCCC
Confidence                     566665444 7777777654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.23  E-value=0.11  Score=44.50  Aligned_cols=157  Identities=13%  Similarity=0.126  Sum_probs=77.6

Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      ....+..+..+++|++++++..-....-||--..      .+.+.  -..-...|..|.|.|++.+.+.+ ..|.|++=+
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~------~w~~~--~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT------TWQPH--NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S------S-EEE--E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCc------cceEE--ccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            3456777888999998888754433445553111      11111  11235789999999998765544 788888776


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhh--ccccCCeEEEEe
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE--KAHEGEITCMAW  405 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~--~~h~~~v~~v~~  405 (440)
                      ....         ......+..........+..++|.+++...++|..|.+.. ....|+.-....  ..-...++.|.|
T Consensus       214 ~~~~---------~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f  283 (302)
T PF14870_consen  214 DPDD---------GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVF  283 (302)
T ss_dssp             -TTE---------EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEE
T ss_pred             CCCC---------ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEE
Confidence            2111         1111111122222334477899999999999988886544 444444322221  123456889999


Q ss_pred             cCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578          406 APKTIPMGNQQVSVLATSSVDKKVKLW  432 (440)
Q Consensus       406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw  432 (440)
                      .++.         .-..-+.||.|.-|
T Consensus       284 ~~~~---------~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  284 VNPD---------KGFVLGQDGVLLRY  301 (302)
T ss_dssp             EETT---------EEEEE-STTEEEEE
T ss_pred             cCCC---------ceEEECCCcEEEEe
Confidence            7664         44455678887665

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.20  E-value=0.021  Score=39.94  Aligned_cols=105  Identities=20%  Similarity=0.222  Sum_probs=64.7

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCE
Q 013578          302 VTWLCFAP---NS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGST  377 (440)
Q Consensus       302 v~~~~~~p---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  377 (440)
                      |++|++..   +| +.|+.||.|..||+|+=....         ..+        .....|..+.-...+++..+-.+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~---------~Ei--------~e~~~v~~L~~~~~~~F~Y~l~NGT   64 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV---------AEI--------TETDKVTSLCSLGGGRFAYALANGT   64 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE---------EEE--------ecccceEEEEEcCCCEEEEEecCCE
Confidence            55666554   33 479999999999999865211         000        1123366677777777666667899


Q ss_pred             EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEE
Q 013578          378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL  431 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~v  431 (440)
                      |-+|+-  .+.+..++  ....++++++..-.    .....-|++|-.+|.|-+
T Consensus        65 VGvY~~--~~RlWRiK--SK~~~~~~~~~D~~----gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   65 VGVYDR--SQRLWRIK--SKNQVTSMAFYDIN----GDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EEEEeC--cceeeeec--cCCCeEEEEEEcCC----CCCceEEEEEecCCeEEe
Confidence            999975  33444443  22336666654432    012257999999998753

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.19  E-value=0.00079  Score=53.00  Aligned_cols=102  Identities=13%  Similarity=0.135  Sum_probs=64.0

Q ss_pred             EEEEeeCCceEEEEeCCCC-ceeeeeeCCCCcccE-EEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          221 IIASCSEGTDISIWHGKTG-KLLGNVDTNQLKNNM-AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      -++.|+.+|.|.+|+.... .....+......+.+ +..-.++.+..++..||.|+.|++...+        .+-....|
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k--------~~g~~g~h  143 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK--------VLGYVGQH  143 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCc--------eeeeeccc
Confidence            6888999999999987621 221222222222332 2333456688899999999999986554        33334445


Q ss_pred             c-cceEEEEEcCCCCEEEEE--eCCCcEEEEecCc
Q 013578          299 K-SAVTWLCFAPNSEQIITA--SKDGTLRVWNINV  330 (440)
Q Consensus       299 ~-~~v~~~~~~p~~~~l~s~--~~dg~i~iwd~~~  330 (440)
                      . .++..+.....++.++..  |.|..++.|++..
T Consensus       144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            5 455555555566666666  7777777787763

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.15  E-value=0.057  Score=50.48  Aligned_cols=205  Identities=14%  Similarity=0.074  Sum_probs=106.5

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCc------cc--EEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLK------NN--MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~------v~--~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                      .++.++.++.|.-+|.++++.+-.+......      +.  .+.+. ++..++.++.+|.|+-+|.++++        .+
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~--------~~  133 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGK--------QV  133 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCC--------Ee
Confidence            5666777899999999999887666543220      00  01111 22678888899999999987776        22


Q ss_pred             eeeecccc--ceEEEEEcC--CCCEEEEEe---------CCCcEEEEecCccccccCCCCccc-cccccccCC------C
Q 013578          293 MQLKGHKS--AVTWLCFAP--NSEQIITAS---------KDGTLRVWNINVRYHLDEDPKTLK-VLPIPLLDS------N  352 (440)
Q Consensus       293 ~~~~~h~~--~v~~~~~~p--~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~------~  352 (440)
                      -.......  .-..+.-+|  .+..++.++         .++.+.-+|..+++.+........ ....+....      .
T Consensus       134 W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~  213 (488)
T cd00216         134 WKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP  213 (488)
T ss_pred             eeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence            22221111  000011111  123444443         367888889888766543211100 000000000      0


Q ss_pred             CCeeeeeeEEeCCCCCEEEEe-cCC------------------EEEEEEcCCccchhhhhccccC-----CeEEEEec--
Q 013578          353 GATLQYDRLSLSSDGKILAAT-HGS------------------TLQWLSVETGKVLDTAEKAHEG-----EITCMAWA--  406 (440)
Q Consensus       353 ~~~~~v~~~~~s~~g~~l~~~-~~~------------------~i~i~d~~~~~~~~~~~~~h~~-----~v~~v~~~--  406 (440)
                      +........++.+.+..+..+ .++                  .|.-+|..+|+.+......+..     ......+.  
T Consensus       214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~  293 (488)
T cd00216         214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI  293 (488)
T ss_pred             CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec
Confidence            000111234555544444443 233                  7999999999988775322211     00000111  


Q ss_pred             --CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          407 --PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       407 --~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                        -++     .....++.++.+|.+...|..+++.
T Consensus       294 ~~~~g-----~~~~~V~~g~~~G~l~ald~~tG~~  323 (488)
T cd00216         294 KPKDG-----KPVPAIVHAPKNGFFYVLDRTTGKL  323 (488)
T ss_pred             cccCC-----CeeEEEEEECCCceEEEEECCCCcE
Confidence              111     1113678888899999999988863

The alignment model contains an 8-bladed beta-propeller.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.06  E-value=0.001  Score=52.43  Aligned_cols=105  Identities=16%  Similarity=0.207  Sum_probs=62.4

Q ss_pred             CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcCCccch
Q 013578          311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGKVL  389 (440)
Q Consensus       311 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~~~  389 (440)
                      +..+++|+.||.|.+|.........      ....      .+.......+.-..++.+..+ +.++.|+.|++..++.+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~------d~~~------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~  137 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHS------DRVC------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL  137 (238)
T ss_pred             CceEEeecccceEEEecCCccchHH------Hhhh------cccccceeccccccccceeEEeccCCceeeeccccCcee
Confidence            4568999999999999887221110      0000      000010111222223334444 45999999999998888


Q ss_pred             hhhhcccc-CCeEEEEecCCCCCCCCCcceEEEEe--eCCCeEEEEeCCC
Q 013578          390 DTAEKAHE-GEITCMAWAPKTIPMGNQQVSVLATS--SVDKKVKLWLAPS  436 (440)
Q Consensus       390 ~~~~~~h~-~~v~~v~~~~~~~~~~~~~~~~l~t~--~~Dg~i~vw~~~~  436 (440)
                      ... ..|. .++........+        +.++.+  |.|..++.|++..
T Consensus       138 g~~-g~h~~~~~e~~ivv~sd--------~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  138 GYV-GQHNFESGEELIVVGSD--------EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eee-ccccCCCcceeEEecCC--------ceEEeeccccchhhhhcchhh
Confidence            776 4566 455555555444        577777  7788888887764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.99  E-value=0.0032  Score=36.46  Aligned_cols=32  Identities=22%  Similarity=0.580  Sum_probs=28.8

Q ss_pred             ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          396 HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       396 h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ....|..++|+|..        .+||.+..||.|.+++++
T Consensus        10 l~~~v~~~~w~P~m--------dLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTM--------DLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCC--------CEEEEEECCCeEEEEECC
Confidence            34579999999998        899999999999999994

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.91  E-value=0.004  Score=36.04  Aligned_cols=31  Identities=19%  Similarity=0.307  Sum_probs=28.4

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecC
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLD  121 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~  121 (440)
                      ...|.+++|+|...+||.|..||.|.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999984

>PHA02713 hypothetical protein; Provisional

Probab=96.85  E-value=0.072  Score=50.56  Aligned_cols=184  Identities=7%  Similarity=0.024  Sum_probs=88.7

Q ss_pred             EEEEeeCC------ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC-----EEEEEeEecCCCceeee
Q 013578          221 IIASCSEG------TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD-----VKVWEIVYSKDGLVKAV  289 (440)
Q Consensus       221 ~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~  289 (440)
                      +++.|+.+      ..+..||..+..-...-.............-+|+..+.|+.++.     +..||.....      +
T Consensus       306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~------W  379 (557)
T PHA02713        306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK------W  379 (557)
T ss_pred             EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe------E
Confidence            55666643      34778888776432211111111122223346788888887643     6778764321      2


Q ss_pred             eeeeeeeccccceEEEEEcCCCCEEEEEeCCC-----------------------cEEEEecCccccccCCCCccccccc
Q 013578          290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDG-----------------------TLRVWNINVRYHLDEDPKTLKVLPI  346 (440)
Q Consensus       290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~  346 (440)
                      ..+..+.........+.+  ++...+.|+.++                       .+..||.++.....     ...+..
T Consensus       380 ~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~-----v~~m~~  452 (557)
T PHA02713        380 KMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET-----LPNFWT  452 (557)
T ss_pred             EECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee-----cCCCCc
Confidence            222222211111222233  677777777653                       35667666443210     000000


Q ss_pred             cccCCCCCeeeeeeEEeCCCCCEEEEec-C------CEEEEEEcCC-c--cchhhhhccccCCeEEEEecCCCCCCCCCc
Q 013578          347 PLLDSNGATLQYDRLSLSSDGKILAATH-G------STLQWLSVET-G--KVLDTAEKAHEGEITCMAWAPKTIPMGNQQ  416 (440)
Q Consensus       347 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~------~~i~i~d~~~-~--~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~  416 (440)
                         ....     .++ ..-+|++.+.|+ +      ..+..||..+ .  +.+..+. ........+.+  ++       
T Consensus       453 ---~r~~-----~~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~~~~~~~--~~-------  513 (557)
T PHA02713        453 ---GTIR-----PGV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSALHTILH--DN-------  513 (557)
T ss_pred             ---cccc-----CcE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-cccccceeEEE--CC-------
Confidence               0000     012 223455555443 2      2467899886 3  3444442 22222333333  33       


Q ss_pred             ceEEEEeeCCC--eEEEEeCCCC
Q 013578          417 VSVLATSSVDK--KVKLWLAPSL  437 (440)
Q Consensus       417 ~~~l~t~~~Dg--~i~vw~~~~~  437 (440)
                       .+.++||.||  .+-.||..+.
T Consensus       514 -~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        514 -TIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             -EEEEEeeecceeehhhcCcccc
Confidence             7899999888  6777777654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.034  Score=49.80  Aligned_cols=144  Identities=12%  Similarity=0.107  Sum_probs=92.7

Q ss_pred             EEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC--E-----EEEEeCCCcEEEEecCccccccC
Q 013578          264 LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE--Q-----IITASKDGTLRVWNINVRYHLDE  336 (440)
Q Consensus       264 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~-----l~s~~~dg~i~iwd~~~~~~~~~  336 (440)
                      |..+.....++-.|+..++        .+...+-|.. |.-+.+.|+.+  .     -+.|=.|..|.-||.+-...   
T Consensus       349 l~~~~~~~~l~klDIE~GK--------IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~---  416 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGK--------IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK---  416 (644)
T ss_pred             eeCCCCcCcceeeecccce--------eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc---
Confidence            3445555667777877766        5666665655 77788888653  1     23455678899999983321   


Q ss_pred             CCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCc
Q 013578          337 DPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQ  416 (440)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~  416 (440)
                        .   .+.............+.|.+-..+|.+++++.+|.|++||. .+....+...+-..+|..|..+.+|       
T Consensus       417 --~---kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadG-------  483 (644)
T KOG2395|consen  417 --N---KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADG-------  483 (644)
T ss_pred             --c---eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccC-------
Confidence              0   11111111112233456777777887777777999999998 7776666667888899999999998       


Q ss_pred             ceEEEEeeCCCeEEEEeC
Q 013578          417 VSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       417 ~~~l~t~~~Dg~i~vw~~  434 (440)
                       .+|+..+ +..+.+-++
T Consensus       484 -Kwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  484 -KWILATC-KTYLLLIDT  499 (644)
T ss_pred             -cEEEEec-ccEEEEEEE
Confidence             5555443 555555544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.82  E-value=0.46  Score=44.84  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=21.6

Q ss_pred             CCCC---EEEEEeCCCcEEEEecCccccc
Q 013578          309 PNSE---QIITASKDGTLRVWNINVRYHL  334 (440)
Q Consensus       309 p~~~---~l~s~~~dg~i~iwd~~~~~~~  334 (440)
                      .+|+   .++.+..+|.+.+.|-++++.+
T Consensus       310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            4665   6778999999999999998765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.75  E-value=0.59  Score=45.98  Aligned_cols=203  Identities=12%  Similarity=0.076  Sum_probs=111.2

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCc--------ccEEEec----------------CCCCeEEEEecCCCEEEE
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLK--------NNMAAIS----------------PNGRFLAAAAFTADVKVW  276 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~s----------------~~~~~l~~~~~dg~i~i~  276 (440)
                      .++.++.++.|.-.|..+|+.+-++......        .+.+.+-                .++..++.++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            6777788888999999999988776543211        1112221                134578888899999888


Q ss_pred             EeEecCCCceeeeeeeeeeeccccce-------------EEEEEcC--CCCEEEEEeC----------CCcEEEEecCcc
Q 013578          277 EIVYSKDGLVKAVTSVMQLKGHKSAV-------------TWLCFAP--NSEQIITASK----------DGTLRVWNINVR  331 (440)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~~~h~~~v-------------~~~~~~p--~~~~l~s~~~----------dg~i~iwd~~~~  331 (440)
                      |..+++        .+..+. ..+.|             ..+.-.|  .+..++.|+.          +|.|+-+|.+++
T Consensus       276 DA~TGk--------~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG  346 (764)
T TIGR03074       276 DADTGK--------LCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG  346 (764)
T ss_pred             ECCCCC--------EEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence            877665        222111 11111             1111222  1334555542          688999999998


Q ss_pred             ccccCCCCccccccc-----cccCCCCCeeeeeeEEeCCCCCEEEEe-------------------cCCEEEEEEcCCcc
Q 013578          332 YHLDEDPKTLKVLPI-----PLLDSNGATLQYDRLSLSSDGKILAAT-------------------HGSTLQWLSVETGK  387 (440)
Q Consensus       332 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~g~~l~~~-------------------~~~~i~i~d~~~~~  387 (440)
                      +.+-...........     ..... +.......+++.+...++..+                   ..+.|.-.|.++|+
T Consensus       347 kl~W~~~~g~p~~~~~~~~g~~~~~-gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk  425 (764)
T TIGR03074       347 ALVWAWDPGNPDPTAPPAPGETYTR-NTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGK  425 (764)
T ss_pred             cEeeEEecCCCCcccCCCCCCEecc-CCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCc
Confidence            876432211000000     00000 111112345566654443331                   12567778889999


Q ss_pred             chhhhhccccCCeEE---------EEecC-CCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          388 VLDTAEKAHEGEITC---------MAWAP-KTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       388 ~~~~~~~~h~~~v~~---------v~~~~-~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      ....++..|.+ +++         +.+.. ++     .....++.++.+|.+.+.|.++++.
T Consensus       426 ~~W~~Q~~~hD-~WD~D~~~~p~L~d~~~~~G-----~~~~~v~~~~K~G~~~vlDr~tG~~  481 (764)
T TIGR03074       426 ERWVFQTVHHD-LWDMDVPAQPSLVDLPDADG-----TTVPALVAPTKQGQIYVLDRRTGEP  481 (764)
T ss_pred             eEEEecccCCc-cccccccCCceEEeeecCCC-----cEeeEEEEECCCCEEEEEECCCCCE
Confidence            88766532321 222         11211 22     1224899999999999999999874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.73  E-value=0.66  Score=45.39  Aligned_cols=175  Identities=12%  Similarity=0.093  Sum_probs=107.3

Q ss_pred             EEEEeCCCCceeeeeeCCC----CcccEEEecCC-CCeEEEEe----------cCCCEEEEEeEecCCCceeeeeeeeee
Q 013578          231 ISIWHGKTGKLLGNVDTNQ----LKNNMAAISPN-GRFLAAAA----------FTADVKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       231 i~vwd~~~~~~~~~~~~~~----~~v~~~~~s~~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      ++++|-.+.+.+...+...    ..+.++.|..| +.++++|+          ..|.|.+|.+...+     ..+.+...
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-----~L~~v~e~  826 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-----SLELVAET  826 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-----ceeeeeee
Confidence            7778877776654443221    12344457776 77888886          35889999886622     11122222


Q ss_pred             eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-
Q 013578          296 KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-  374 (440)
Q Consensus       296 ~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-  374 (440)
                      . -++.+.++..- +|++||.-+  ..|++|++.+.+.++.              ...+...+..+...-.|..+++|+ 
T Consensus       827 ~-v~Gav~aL~~f-ngkllA~In--~~vrLye~t~~~eLr~--------------e~~~~~~~~aL~l~v~gdeI~VgDl  888 (1096)
T KOG1897|consen  827 V-VKGAVYALVEF-NGKLLAGIN--QSVRLYEWTTERELRI--------------ECNISNPIIALDLQVKGDEIAVGDL  888 (1096)
T ss_pred             e-eccceeehhhh-CCeEEEecC--cEEEEEEccccceehh--------------hhcccCCeEEEEEEecCcEEEEeec
Confidence            2 23555555432 677776554  5899999987644321              122334466788888899999987 


Q ss_pred             CCEEE--EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          375 GSTLQ--WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       375 ~~~i~--i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      -+.+.  .|+...|........-+....+++.+-.+.         .++-+..+|.+++-..++.
T Consensus       889 m~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d---------~ylgae~~gNlf~v~~d~~  944 (1096)
T KOG1897|consen  889 MRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD---------TYLGAENSGNLFTVRKDSD  944 (1096)
T ss_pred             cceEEEEEEeccCCceEEeehhhCccceeeEEEecCc---------eEEeecccccEEEEEecCC
Confidence            45544  455555544443334577788888888774         5666677888888776643

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.71  E-value=0.3  Score=41.12  Aligned_cols=155  Identities=16%  Similarity=0.117  Sum_probs=89.9

Q ss_pred             CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578          140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS  219 (440)
Q Consensus       140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (440)
                      .+.+.+++++++.++..........+++............                          ......-.+.+++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--------------------------g~~l~~PS~d~~g~   78 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--------------------------GGSLTRPSWDPDGW   78 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--------------------------CCccccccccCCCC
Confidence            6889999999999988885545667776655443211110                          00111122355555


Q ss_pred             eEEEEeeCCceEEEE-eCCCCcee-eeeeCC--CCcccEEEecCCCCeEEEEe---cCCCEEEEEeEecCCCceee-eee
Q 013578          220 TIIASCSEGTDISIW-HGKTGKLL-GNVDTN--QLKNNMAAISPNGRFLAAAA---FTADVKVWEIVYSKDGLVKA-VTS  291 (440)
Q Consensus       220 ~~l~s~~~d~~i~vw-d~~~~~~~-~~~~~~--~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~-~~~  291 (440)
                       ..+....+...+++ +..+++.. ..+...  ...|..+.+||||..++...   .+++|.+--+....++.... ...
T Consensus        79 -~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~  157 (253)
T PF10647_consen   79 -VWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP  157 (253)
T ss_pred             -EEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccc
Confidence             44444444445555 33333221 122221  12799999999999988776   35788888877666551111 112


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      ..........+..++|.+++.+++.+...+
T Consensus       158 ~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  158 RRVAPPLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             eEecccccCcceeeeecCCCEEEEEeCCCC
Confidence            222223456899999999998776665433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.0066  Score=58.72  Aligned_cols=101  Identities=17%  Similarity=0.270  Sum_probs=72.4

Q ss_pred             CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccc
Q 013578          310 NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKV  388 (440)
Q Consensus       310 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~  388 (440)
                      .+..++.|+..|.+...|+...-+             +.+.......+|++++|+.+|++++.|. +|.|.+||+..++.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~-------------~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~  164 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLG-------------PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI  164 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccc-------------hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc
Confidence            456788888889999888875311             1233444566799999999999999986 89999999999998


Q ss_pred             hhhhhccccCCeEEE---EecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          389 LDTAEKAHEGEITCM---AWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       389 ~~~~~~~h~~~v~~v---~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ++.+ ..|..+.+.+   .+..++        ..++++..-|.  +|++
T Consensus       165 l~~i-~e~~ap~t~vi~v~~t~~n--------S~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  165 LKVI-TEHGAPVTGVIFVGRTSQN--------SKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeee-eecCCccceEEEEEEeCCC--------cEEEEccCCCc--eEEE
Confidence            8777 3555554444   343443        56778777775  5654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.64  E-value=0.56  Score=44.24  Aligned_cols=200  Identities=13%  Similarity=0.062  Sum_probs=110.7

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCC-ccc---E-------EEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQL-KNN---M-------AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV  289 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~---~-------~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  289 (440)
                      .++.++.++.|.-+|..+|+.+-++..... .+.   +       +++  .+..++.++.|+.+.-+|..+++       
T Consensus        71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk-------  141 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK-------  141 (527)
T ss_pred             EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCC-------
Confidence            566677778899999999998877653211 111   1       111  23567788889999999987766       


Q ss_pred             eeeeeee--ccccceEEEEEcC---CCCEEEEEe------CCCcEEEEecCccccccCCCCccccc--------------
Q 013578          290 TSVMQLK--GHKSAVTWLCFAP---NSEQIITAS------KDGTLRVWNINVRYHLDEDPKTLKVL--------------  344 (440)
Q Consensus       290 ~~~~~~~--~h~~~v~~~~~~p---~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~--------------  344 (440)
                       .+-...  .+... ..+.-+|   ++. ++.+.      .+|.|.-+|.++++.+-.........              
T Consensus       142 -~~W~~~~~~~~~~-~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~  218 (527)
T TIGR03075       142 -VVWSKKNGDYKAG-YTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP  218 (527)
T ss_pred             -EEeeccccccccc-ccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence             221111  11100 0111122   343 44443      26889999998887764322211100              


Q ss_pred             -----cccccCCCCCeeeeeeEEeCCCCCEEEEec------C-----------CEEEEEEcCCccchhhhhccccCCeEE
Q 013578          345 -----PIPLLDSNGATLQYDRLSLSSDGKILAATH------G-----------STLQWLSVETGKVLDTAEKAHEGEITC  402 (440)
Q Consensus       345 -----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------~-----------~~i~i~d~~~~~~~~~~~~~h~~~v~~  402 (440)
                           .-..... +.......+++.+...++..+.      +           ..|.-.|.+||+....++..|. .+++
T Consensus       219 ~~~tw~~~~~~~-gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~-D~wD  296 (527)
T TIGR03075       219 GAKTWPGDAWKT-GGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPH-DEWD  296 (527)
T ss_pred             ccCCCCCCcccc-CCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCC-CCcc
Confidence                 0000011 1112233567777666555432      1           2677889999998776643222 1222


Q ss_pred             E---------EecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          403 M---------AWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       403 v---------~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      .         ....++     .....++.+..+|.+.+.|..++|.
T Consensus       297 ~d~~~~p~l~d~~~~G-----~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       297 YDGVNEMILFDLKKDG-----KPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             ccCCCCcEEEEeccCC-----cEEEEEEEeCCCceEEEEECCCCce
Confidence            1         121232     2225788999999999999998874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.63  E-value=0.0054  Score=58.16  Aligned_cols=110  Identities=15%  Similarity=0.152  Sum_probs=65.0

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccE-----------EEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM-----------AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV  289 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~-----------~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  289 (440)
                      ++..+..+++|++.+..+... ..+..|...+..           -.++|||+.|+.+..||.++.|.+.....   ...
T Consensus       197 ~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~---~~~  272 (1283)
T KOG1916|consen  197 YICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK---IVH  272 (1283)
T ss_pred             eeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc---ccH
Confidence            555566677777766543221 222334332222           24799999999999999999998754321   333


Q ss_pred             eeeeeeeccc-cceEEEEEcCCC---------CEEEEEe-CCCcEEEEecCccccc
Q 013578          290 TSVMQLKGHK-SAVTWLCFAPNS---------EQIITAS-KDGTLRVWNINVRYHL  334 (440)
Q Consensus       290 ~~~~~~~~h~-~~v~~~~~~p~~---------~~l~s~~-~dg~i~iwd~~~~~~~  334 (440)
                      ++++..+.|. .+-.|.-++.+.         .++++++ .+..+++|.-..-.|+
T Consensus       273 rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  273 RCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             hhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            4667777777 344444354322         1334444 4567899987655443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.62  E-value=0.13  Score=44.16  Aligned_cols=164  Identities=16%  Similarity=0.171  Sum_probs=83.3

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc-eEEEccCCCeEEEEeecCCcceEEeecccccccccccccc
Q 013578          104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT-AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ  182 (440)
Q Consensus       104 ~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (440)
                      ..+.+-+.||.+.-..++............+.....++. .-++...+..++..+.++....+.+-...-.         
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~---------  218 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK---------  218 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE---------
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc---------
Confidence            457788899999999998655444333344433333332 3344555555555555543333333222110         


Q ss_pred             CCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee--C-------CceEEEEeCCCCceeeeeeCCCCccc
Q 013578          183 SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS--E-------GTDISIWHGKTGKLLGNVDTNQLKNN  253 (440)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~-------d~~i~vwd~~~~~~~~~~~~~~~~v~  253 (440)
                           ....|..........-....+.....+++..+.+++..-  .       ...|.++|+.+++.+..+... .++.
T Consensus       219 -----~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~  292 (342)
T PF06433_consen  219 -----FGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPID  292 (342)
T ss_dssp             -----EEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEES
T ss_pred             -----ccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-Cccc
Confidence                 011222211111111111112222222333332322221  1       124889999999999998763 4577


Q ss_pred             EEEecCCCC-eEEEEe-cCCCEEEEEeEecC
Q 013578          254 MAAISPNGR-FLAAAA-FTADVKVWEIVYSK  282 (440)
Q Consensus       254 ~~~~s~~~~-~l~~~~-~dg~i~i~d~~~~~  282 (440)
                      +++++.+.+ +|++.+ .++.+.+||..+++
T Consensus       293 Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  293 SIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             eEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            899999876 454444 57899999987765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.60  E-value=0.088  Score=49.59  Aligned_cols=130  Identities=9%  Similarity=0.132  Sum_probs=76.9

Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc--CCCCEEEEEeCCC
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA--PNSEQIITASKDG  321 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~~~dg  321 (440)
                      ++...-...+.+.-+.-++..++-+....+.|||.+.+.      ......+ ...+.|..++|.  |+++.+++.|...
T Consensus        24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~------lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~   96 (631)
T PF12234_consen   24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV------LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPH   96 (631)
T ss_pred             EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcE------EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCc
Confidence            334444445556666666665565556679999986543      1122223 356889999995  5888888888899


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEc
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSV  383 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~  383 (440)
                      .|.+|.-.........+.-.....+.+.....  .+|....|.++|.+++ |.++.+.|+|-
T Consensus        97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk  155 (631)
T PF12234_consen   97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK  155 (631)
T ss_pred             EEEEEEccchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence            99998653222222222211111112222222  3477899999997655 44677777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.55  E-value=0.46  Score=45.21  Aligned_cols=185  Identities=14%  Similarity=0.207  Sum_probs=90.0

Q ss_pred             EEEEeeCC------ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC-----EEEEEeEecCCCceeee
Q 013578          221 IIASCSEG------TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD-----VKVWEIVYSKDGLVKAV  289 (440)
Q Consensus       221 ~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~  289 (440)
                      +.++|+.|      ..+..||..+++-...-.........-...-+|...++|+.||.     +..||....+      +
T Consensus       335 lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~------W  408 (571)
T KOG4441|consen  335 LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK------W  408 (571)
T ss_pred             EEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc------c
Confidence            45555555      34777888776643322211222221222337888999998875     5566654332      2


Q ss_pred             eeeeeeeccccceEEEEEcCCCCEEEEEeCCC------cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDG------TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                      ..+..+.......-...+  +|...++|+.|+      ++..||..+.......+     +.   ....++     .++.
T Consensus       409 ~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~-----M~---~~R~~~-----g~a~  473 (571)
T KOG4441|consen  409 TPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP-----MN---TRRSGF-----GVAV  473 (571)
T ss_pred             cccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCC-----cc---cccccc-----eEEE
Confidence            222222222222222333  677788888655      45677776553321110     00   001111     1222


Q ss_pred             CCCCCEEEE-ecCC-----EEEEEEcCCccchhhhh-ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe-----EEE
Q 013578          364 SSDGKILAA-THGS-----TLQWLSVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK-----VKL  431 (440)
Q Consensus       364 s~~g~~l~~-~~~~-----~i~i~d~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~-----i~v  431 (440)
                       -++.+.+. |.++     .+..||..+.+-...-. ......+..+.+. +         .+.+.||.||.     |..
T Consensus       474 -~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~-~---------~ly~vGG~~~~~~l~~ve~  542 (571)
T KOG4441|consen  474 -LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLG-G---------KLYAVGGFDGNNNLNTVEC  542 (571)
T ss_pred             -ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEEC-C---------EEEEEecccCccccceeEE
Confidence             24555554 4343     47889887765332221 1223333333333 2         57888888864     566


Q ss_pred             EeCCCC
Q 013578          432 WLAPSL  437 (440)
Q Consensus       432 w~~~~~  437 (440)
                      ||..+.
T Consensus       543 ydp~~d  548 (571)
T KOG4441|consen  543 YDPETD  548 (571)
T ss_pred             cCCCCC
Confidence            665543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.52  E-value=0.92  Score=44.46  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=45.0

Q ss_pred             eeeeeeEEeCCC-CCEEEEec-----------CCEEEEEEcCCccchhhh-hccccCCeEEEEecCCCCCCCCCcceEEE
Q 013578          355 TLQYDRLSLSSD-GKILAATH-----------GSTLQWLSVETGKVLDTA-EKAHEGEITCMAWAPKTIPMGNQQVSVLA  421 (440)
Q Consensus       355 ~~~v~~~~~s~~-g~~l~~~~-----------~~~i~i~d~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~~~~~~~~l~  421 (440)
                      ...+.++.|..| +.++++|.           .|.|.+|....+..+... +..-.+.|.++.--..         ++||
T Consensus       774 ~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fng---------kllA  844 (1096)
T KOG1897|consen  774 ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNG---------KLLA  844 (1096)
T ss_pred             eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCC---------eEEE
Confidence            345666778887 77777763           278999988874433322 1123456666654443         4555


Q ss_pred             EeeCCCeEEEEeCCCC
Q 013578          422 TSSVDKKVKLWLAPSL  437 (440)
Q Consensus       422 t~~~Dg~i~vw~~~~~  437 (440)
                        +-...|++|+....
T Consensus       845 --~In~~vrLye~t~~  858 (1096)
T KOG1897|consen  845 --GINQSVRLYEWTTE  858 (1096)
T ss_pred             --ecCcEEEEEEcccc
Confidence              45667999998776

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.50  E-value=0.66  Score=42.56  Aligned_cols=197  Identities=11%  Similarity=0.094  Sum_probs=101.3

Q ss_pred             cCCCCCeEEEEeeCCc----eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC---------C--EEEEEe
Q 013578          214 GTADGSTIIASCSEGT----DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA---------D--VKVWEI  278 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------~--i~i~d~  278 (440)
                      ++|+|+.++++-+..|    .|+++|+.+++.+...-. ......+.|.++++.|+....+.         .  |+.|.+
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~  209 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL  209 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence            3889996766655444    499999999977643211 12223499999998887776443         2  555555


Q ss_pred             EecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC---C-CcEEEEecCccccccCCCCccccccccccCCCCC
Q 013578          279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK---D-GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA  354 (440)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (440)
                      .+...    .-..+..-.........+..++++++|+..+.   + ..+.+.|+......   ......+   .....+.
T Consensus       210 gt~~~----~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~---~~~~~~l---~~~~~~~  279 (414)
T PF02897_consen  210 GTPQS----EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP---DAKPKLL---SPREDGV  279 (414)
T ss_dssp             TS-GG----G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS---S-SEEEE---EESSSS-
T ss_pred             CCChH----hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC---cCCcEEE---eCCCCce
Confidence            33321    11122222222222568889999998765442   2 34677777643100   0011110   0111111


Q ss_pred             eeeeeeEEeCCCCCEEEEec----CCEEEEEEcCCccc--hh-hhhccccC--CeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578          355 TLQYDRLSLSSDGKILAATH----GSTLQWLSVETGKV--LD-TAEKAHEG--EITCMAWAPKTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       355 ~~~v~~~~~s~~g~~l~~~~----~~~i~i~d~~~~~~--~~-~~~~~h~~--~v~~v~~~~~~~~~~~~~~~~l~t~~~  425 (440)
                      ..   .+... ++.+++...    .+.|.-.++.....  .. .+ ..|..  .+..+....+         .+++.--.
T Consensus       280 ~~---~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l-~~~~~~~~l~~~~~~~~---------~Lvl~~~~  345 (414)
T PF02897_consen  280 EY---YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL-IPEDEDVSLEDVSLFKD---------YLVLSYRE  345 (414)
T ss_dssp             EE---EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE-E--SSSEEEEEEEEETT---------EEEEEEEE
T ss_pred             EE---EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEE-cCCCCceeEEEEEEECC---------EEEEEEEE
Confidence            11   12222 444444432    46787788877663  11 22 34554  4666666555         56666666


Q ss_pred             CCe--EEEEeCC
Q 013578          426 DKK--VKLWLAP  435 (440)
Q Consensus       426 Dg~--i~vw~~~  435 (440)
                      ++.  |+++++.
T Consensus       346 ~~~~~l~v~~~~  357 (414)
T PF02897_consen  346 NGSSRLRVYDLD  357 (414)
T ss_dssp             TTEEEEEEEETT
T ss_pred             CCccEEEEEECC
Confidence            654  6777776

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.49  E-value=0.4  Score=39.82  Aligned_cols=180  Identities=16%  Similarity=0.169  Sum_probs=95.3

Q ss_pred             CCCCeEEEEeeCCc--eEEEEeCCCCceeeeeeCCCCc-ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578          216 ADGSTIIASCSEGT--DISIWHGKTGKLLGNVDTNQLK-NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       216 ~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                      .+|. ++-+.+.-|  .|+.+|+.+++........... --.++.. +++.....=.++...+||..+-+        .+
T Consensus        54 ~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~--------~~  123 (264)
T PF05096_consen   54 DDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK--------KI  123 (264)
T ss_dssp             ETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTE--------EE
T ss_pred             CCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccce--------EE
Confidence            4444 556666554  5999999999887666543211 1123332 23333444467888899975332        33


Q ss_pred             eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                      .++. ..+.=+.++.  ++..|+.......++++|..+.....       .+.  +.........++-+-|- +|.+.|-
T Consensus       124 ~~~~-y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~-------~i~--V~~~g~pv~~LNELE~i-~G~IyAN  190 (264)
T PF05096_consen  124 GTFP-YPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVR-------TIQ--VTDNGRPVSNLNELEYI-NGKIYAN  190 (264)
T ss_dssp             EEEE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEE-------EEE---EETTEE---EEEEEEE-TTEEEEE
T ss_pred             EEEe-cCCcceEEEc--CCCEEEEECCccceEEECCcccceEE-------EEE--EEECCEECCCcEeEEEE-cCEEEEE
Confidence            3333 2234456663  67777777667789999977543221       111  11111112234445553 5666654


Q ss_pred             ec-CCEEEEEEcCCccchhhhh-----c---------cccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578          373 TH-GSTLQWLSVETGKVLDTAE-----K---------AHEGEITCMAWAPKTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       373 ~~-~~~i~i~d~~~~~~~~~~~-----~---------~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~  425 (440)
                      -- ...|...|..+|+....+.     .         ...+-.+.|+|.|...       ++++||=.
T Consensus       191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~-------~l~vTGK~  251 (264)
T PF05096_consen  191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD-------RLFVTGKL  251 (264)
T ss_dssp             ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT-------EEEEEETT
T ss_pred             eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC-------EEEEEeCC
Confidence            43 6778888888887654321     0         1134689999998752       67777743

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.46  E-value=0.23  Score=46.96  Aligned_cols=141  Identities=13%  Similarity=0.135  Sum_probs=79.0

Q ss_pred             CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccC
Q 013578          271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLD  350 (440)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  350 (440)
                      |.|+.|..+...+.....+.....+...-....-+.-+.-++.-+.-+...++.|||.+.+....+             .
T Consensus         1 g~~~~~~a~v~~~~~~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-------------~   67 (631)
T PF12234_consen    1 GRIRTWTARVDTESNKIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-------------E   67 (631)
T ss_pred             CeeEEEEEEEcCCCCeEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-------------e
Confidence            456666665444444444444555554444555555555454433333445799999986542111             1


Q ss_pred             CCCCeeeeeeEEeC--CCCC-EEEEecCCEEEEEEcCC---------ccchhhh-hcccc-CCeEEEEecCCCCCCCCCc
Q 013578          351 SNGATLQYDRLSLS--SDGK-ILAATHGSTLQWLSVET---------GKVLDTA-EKAHE-GEITCMAWAPKTIPMGNQQ  416 (440)
Q Consensus       351 ~~~~~~~v~~~~~s--~~g~-~l~~~~~~~i~i~d~~~---------~~~~~~~-~~~h~-~~v~~v~~~~~~~~~~~~~  416 (440)
                      .......|..+.|.  |+|+ +|++|..+.|.+|.-..         ...+..+ ...|+ .+|.+..|.++|       
T Consensus        68 ~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-------  140 (631)
T PF12234_consen   68 SFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-------  140 (631)
T ss_pred             eecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-------
Confidence            11223446677775  6777 56678899999885421         1122221 02333 579999999997       


Q ss_pred             ceEEEEeeCCCeEEEEeC
Q 013578          417 VSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       417 ~~~l~t~~~Dg~i~vw~~  434 (440)
                        .|+.|+ .+.+.|++-
T Consensus       141 --~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  141 --TLVVGS-GNQLFVFDK  155 (631)
T ss_pred             --eEEEEe-CCEEEEECC
Confidence              555554 456777753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=0.0088  Score=57.92  Aligned_cols=98  Identities=17%  Similarity=0.249  Sum_probs=68.9

Q ss_pred             EEEEeeCCceEEEEeCCCC-ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578          221 IIASCSEGTDISIWHGKTG-KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK  299 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  299 (440)
                      .++.|+..|.+-..|+... .+...-...+++|++++|+.+|..++.|-.+|.|.+||+..++        .++.+..|.
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k--------~l~~i~e~~  172 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK--------ILKVITEHG  172 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc--------ceeeeeecC
Confidence            6788888888988887643 1112223346789999999999999999999999999997765        455555555


Q ss_pred             cceEE---EEEcCCCCEEEEEeCCCcEEEEec
Q 013578          300 SAVTW---LCFAPNSEQIITASKDGTLRVWNI  328 (440)
Q Consensus       300 ~~v~~---~~~~p~~~~l~s~~~dg~i~iwd~  328 (440)
                      .+.++   +.+..++..++++..-|.  +|.+
T Consensus       173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            44443   344445556777777775  5544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.45  E-value=0.52  Score=40.72  Aligned_cols=113  Identities=17%  Similarity=0.141  Sum_probs=72.7

Q ss_pred             cccceeEEE-eecccccccCCCCCeEEEEeeCCceEEEEeCCC--Cce-----eeeeeCCCCcccEEEecCCCCeEEEEe
Q 013578          197 VHDKRAILT-LFGASATYGTADGSTIIASCSEGTDISIWHGKT--GKL-----LGNVDTNQLKNNMAAISPNGRFLAAAA  268 (440)
Q Consensus       197 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~  268 (440)
                      .+..+.... ...+..+.++||++.++++=+..+.|.-|++..  +..     ...+....+..-.++...+|++.+++.
T Consensus       152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~  231 (307)
T COG3386         152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV  231 (307)
T ss_pred             CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc
Confidence            344444444 667888899999997777777778899887752  211     112222345566788888898886555


Q ss_pred             cCC-CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc-CCCCEEEEEe
Q 013578          269 FTA-DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA-PNSEQIITAS  318 (440)
Q Consensus       269 ~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l~s~~  318 (440)
                      .+| .|.+|+.. ++        .+....-....+++++|- |+.+.|+..+
T Consensus       232 ~~g~~v~~~~pd-G~--------l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         232 WGGGRVVRFNPD-GK--------LLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             cCCceEEEECCC-Cc--------EEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            554 89999876 43        455555555678888884 3445554443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.40  E-value=0.46  Score=39.66  Aligned_cols=82  Identities=13%  Similarity=0.031  Sum_probs=50.1

Q ss_pred             CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee--eeeccccceEEEEEcCC-CCEEEEEeCCCcEEE
Q 013578          249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM--QLKGHKSAVTWLCFAPN-SEQIITASKDGTLRV  325 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~i  325 (440)
                      +...-.++|+|..+.|+++-+..=+.||.+....+..........  ...-.-..|.++.|++. +.+|+-+.+++.+.-
T Consensus       180 N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~E  259 (316)
T COG3204         180 NKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLE  259 (316)
T ss_pred             CcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEE
Confidence            445667999999999999988888899887644321111000000  00001235778888874 455666667777777


Q ss_pred             EecCc
Q 013578          326 WNINV  330 (440)
Q Consensus       326 wd~~~  330 (440)
                      .|...
T Consensus       260 vd~~G  264 (316)
T COG3204         260 VDLSG  264 (316)
T ss_pred             EecCC
Confidence            77653

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.36  E-value=0.7  Score=41.24  Aligned_cols=257  Identities=14%  Similarity=0.182  Sum_probs=98.1

Q ss_pred             CCCCCCCCcccCcccccccc-ccC-cceeEEEEc-----------cCCCEEEEee-CCCcEEEEecCCCCCcceeeEEec
Q 013578           69 SHGDKDQNKRHHPLDVNTLK-GHG-DSVTGLCFS-----------SDGKCLATAC-ADGVIRVHKLDDASSKSFKFLRIN  134 (440)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~l~-~H~-~~V~~l~~s-----------~dg~~l~t~s-~dg~v~vW~~~~~~~~~~~~~~~~  134 (440)
                      ++-+.+.......+.++.+. .|. +.....-|+           .+.++|+..+ ..+.|.|.|+.+....+. +.+..
T Consensus        40 atVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~-l~KvI  118 (461)
T PF05694_consen   40 ATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR-LHKVI  118 (461)
T ss_dssp             EEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E-EEEEE
T ss_pred             EEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc-eEeee
Confidence            34444444444444455442 232 355555554           2456777776 678899999885433221 22211


Q ss_pred             CC---C----CCCCceEEEccCCCeEEEEeecCCc---ceEEeeccccccccc--cccccCCCCCCceeeccccccccee
Q 013578          135 LP---P----GGPPTAVAFADNATSIVVATHNLSG---CSLYMYGEEKAISTN--EGKQQSKLPGPEIKWEHHKVHDKRA  202 (440)
Q Consensus       135 ~~---~----~~~v~~v~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  202 (440)
                      .+   +    -.....+.-.|+|..++++-.+..+   ..+.+.+.+......  +........+..+-|..   +....
T Consensus       119 e~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp---r~nvM  195 (461)
T PF05694_consen  119 EPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP---RHNVM  195 (461)
T ss_dssp             -HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET---TTTEE
T ss_pred             CHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC---CCCEE
Confidence            11   0    0123345556888888877554322   234444444221111  11111111122222221   11112


Q ss_pred             EEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc--ccEEEe--cCCCCeEEEEec-CCCEEEEE
Q 013578          203 ILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK--NNMAAI--SPNGRFLAAAAF-TADVKVWE  277 (440)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--v~~~~~--s~~~~~l~~~~~-dg~i~i~d  277 (440)
                      +...++...++...-...-+..+....++.+||+.+.+.++++......  ...+.|  .|+..+-++|+. ..+|..|-
T Consensus       196 iSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~  275 (461)
T PF05694_consen  196 ISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFY  275 (461)
T ss_dssp             EE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred             EEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEE
Confidence            2222222111110000001222345678999999999999998765422  334444  455555444443 33443333


Q ss_pred             eEecCCCceeeeeeeeeeec-----------------cccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccc
Q 013578          278 IVYSKDGLVKAVTSVMQLKG-----------------HKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRY  332 (440)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~-----------------h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~  332 (440)
                        ...++.. ..+.+..+..                 -..-|+.|..|.|.++|+.++ .+|.|+.||+....
T Consensus       276 --k~~~g~W-~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  276 --KDDDGEW-AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             --E-ETTEE-EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             --EcCCCCe-eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence              2222221 1112222211                 134579999999999987666 69999999998543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.30  E-value=0.44  Score=38.29  Aligned_cols=101  Identities=17%  Similarity=0.259  Sum_probs=61.6

Q ss_pred             eEEEEEcCCCCEEE-EEeCCCcEEEEe--cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCE
Q 013578          302 VTWLCFAPNSEQII-TASKDGTLRVWN--INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGST  377 (440)
Q Consensus       302 v~~~~~~p~~~~l~-s~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~  377 (440)
                      -+.++|+.+.+.+. +-+.+-+|.-||  ..++.....  +.+  +......... ...-..++...+|.+.++ -+.++
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr--~~i--~dlrk~~~~e-~~~PDGm~ID~eG~L~Va~~ng~~  234 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR--KVI--FDLRKSQPFE-SLEPDGMTIDTEGNLYVATFNGGT  234 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCc--cee--EEeccCCCcC-CCCCCcceEccCCcEEEEEecCcE
Confidence            35788987776554 556677887787  444433211  111  1000000000 111123556667775555 45899


Q ss_pred             EEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578          378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                      |..+|..+|+.+.++. -....|++++|-..
T Consensus       235 V~~~dp~tGK~L~eik-lPt~qitsccFgGk  264 (310)
T KOG4499|consen  235 VQKVDPTTGKILLEIK-LPTPQITSCCFGGK  264 (310)
T ss_pred             EEEECCCCCcEEEEEE-cCCCceEEEEecCC
Confidence            9999999999999884 56889999999765

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.24  E-value=0.86  Score=41.14  Aligned_cols=163  Identities=13%  Similarity=0.135  Sum_probs=87.1

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEc---c--CCCeEEEEeecCCcceEEeecccccccc
Q 013578          102 DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFA---D--NATSIVVATHNLSGCSLYMYGEEKAIST  176 (440)
Q Consensus       102 dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~---~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~  176 (440)
                      +...|+.||..|.+|||+......... .+........+|..++.-   +  +...|++-..    ..+.+|........
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP----~kl~vY~v~~~~g~  110 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHP----RKLSVYSVSLVDGT  110 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCc-cEEEEEecCCcEEEEEeccccCCCCcceEEEecC----CEEEEEEEEecCCC
Confidence            346899999999999999865543322 122233344677776643   2  2223443322    24444443111100


Q ss_pred             ccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEE
Q 013578          177 NEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAA  256 (440)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  256 (440)
                      ..   ..........+.+.-  ........   ...+....++.++..-+.||.+.+|+-+.....+.+.. .--...+.
T Consensus       111 ~~---~g~~~~L~~~yeh~l--~~~a~nm~---~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~  181 (418)
T PF14727_consen  111 VE---HGNQYQLELIYEHSL--QRTAYNMC---CGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLC  181 (418)
T ss_pred             cc---cCcEEEEEEEEEEec--ccceeEEE---EEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeE
Confidence            00   000000011111111  00111111   11222445566899999999999999765544444443 23335578


Q ss_pred             ecCCCCeEEEEecCCCEEEEEe
Q 013578          257 ISPNGRFLAAAAFTADVKVWEI  278 (440)
Q Consensus       257 ~s~~~~~l~~~~~dg~i~i~d~  278 (440)
                      +.+....|++++.+..+..|..
T Consensus       182 Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  182 YCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             EeecCCEEEEecCceeEEEecH
Confidence            8898899999998888888875

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.24  E-value=0.6  Score=39.30  Aligned_cols=150  Identities=14%  Similarity=0.119  Sum_probs=83.6

Q ss_pred             cccCCCCCeEEEEe--eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEe-EecCCCceee
Q 013578          212 TYGTADGSTIIASC--SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI-VYSKDGLVKA  288 (440)
Q Consensus       212 ~~~~~~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~  288 (440)
                      ...+++++.+.+..  .....++++..  +....... ....+....|++++...++...+...+++.. ..+.   ...
T Consensus        29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~---~~~  102 (253)
T PF10647_consen   29 PAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT---GEP  102 (253)
T ss_pred             eEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc---cee
Confidence            34478888555555  23344555543  33333322 2236778899999887777776766676641 1111   010


Q ss_pred             eeeeeeeeccccceEEEEEcCCCCEEEEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578          289 VTSVMQLKGHKSAVTWLCFAPNSEQIITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS  365 (440)
Q Consensus       289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  365 (440)
                        .......-.+.|..+.+||||..++...   .++.|.+=-+.....     .....+..+..........+..++|.+
T Consensus       103 --~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~-----g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen  103 --VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGD-----GVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             --EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCC-----CCcceeccceEecccccCcceeeeecC
Confidence              1111111112899999999999887665   356777766542211     101111112222222234578999999


Q ss_pred             CCCEEEEec
Q 013578          366 DGKILAATH  374 (440)
Q Consensus       366 ~g~~l~~~~  374 (440)
                      ++.+++.+.
T Consensus       176 ~~~L~V~~~  184 (253)
T PF10647_consen  176 DSTLVVLGR  184 (253)
T ss_pred             CCEEEEEeC
Confidence            999888764

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA02790 Kelch-like protein; Provisional

Probab=96.22  E-value=0.67  Score=43.35  Aligned_cols=182  Identities=7%  Similarity=0.003  Sum_probs=86.5

Q ss_pred             EEEEeeCC-----ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC--CEEEEEeEecCCCceeeeeeee
Q 013578          221 IIASCSEG-----TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA--DVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       221 ~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      +++.|+.+     ..+..||..+++....-.............-++...++|+.++  .+..||....      .+..+.
T Consensus       274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n------~W~~~~  347 (480)
T PHA02790        274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA------AWVNMP  347 (480)
T ss_pred             EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCC------eEEECC
Confidence            56666654     3477788877654322211111111122234677888887643  4666764321      222222


Q ss_pred             eeeccccceEEEEEcCCCCEEEEEeCCC---cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          294 QLKGHKSAVTWLCFAPNSEQIITASKDG---TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       294 ~~~~h~~~v~~~~~~p~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                      .+.........+.+  +|+..+.|+.++   .+..||.++......     ...+.   ....      ..+..-+|++.
T Consensus       348 ~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-----~~m~~---~r~~------~~~~~~~~~IY  411 (480)
T PHA02790        348 SLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFG-----PSTYY---PHYK------SCALVFGRRLF  411 (480)
T ss_pred             CCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeC-----CCCCC---cccc------ceEEEECCEEE
Confidence            22211111222223  677777777553   466787765432110     00000   0011      11223456666


Q ss_pred             EEecCCEEEEEEcCCcc--chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-----CeEEEEeCCCC
Q 013578          371 AATHGSTLQWLSVETGK--VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-----KKVKLWLAPSL  437 (440)
Q Consensus       371 ~~~~~~~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-----g~i~vw~~~~~  437 (440)
                      +.|  |.+.+||..+++  .+..+. ...... +++.. ++        .+.+.||.+     ..+.+||..+.
T Consensus       412 v~G--G~~e~ydp~~~~W~~~~~m~-~~r~~~-~~~v~-~~--------~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        412 LVG--RNAEFYCESSNTWTLIDDPI-YPRDNP-ELIIV-DN--------KLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             EEC--CceEEecCCCCcEeEcCCCC-CCcccc-EEEEE-CC--------EEEEECCcCCCcccceEEEEECCCC
Confidence            665  346778877654  233332 111122 23333 33        688888764     45778887764

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.20  E-value=0.8  Score=40.38  Aligned_cols=57  Identities=16%  Similarity=0.259  Sum_probs=36.5

Q ss_pred             CCCEEEEec-CCEEEEEEcCCccch---hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578          366 DGKILAATH-GSTLQWLSVETGKVL---DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK  430 (440)
Q Consensus       366 ~g~~l~~~~-~~~i~i~d~~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~  430 (440)
                      .|.++++.. .+.|....+..+..+   ..+.......+.+|++.|||        .++++-+.+|.|.
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG--------~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG--------ALYVSDDSDGKIY  330 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS--------EEEEEE-TTTTEE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC--------eEEEEECCCCeEe
Confidence            355666655 578888877644322   12223345589999999998        7888877888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.02  E-value=0.7  Score=39.72  Aligned_cols=61  Identities=13%  Similarity=0.187  Sum_probs=32.4

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEE
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIV  154 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~  154 (440)
                      +-.+.+..+..++||+++++++.-....-|+--...   +..  ........+.++.|.|++...+
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~--~~r~~~~riq~~gf~~~~~lw~  202 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQP--HNRNSSRRIQSMGFSPDGNLWM  202 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EE--EE--SSS-EEEEEE-TTS-EEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceE--EccCccceehhceecCCCCEEE
Confidence            334778888899999999888776666777754221   112  2223347788999998866444

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.98  E-value=0.26  Score=47.03  Aligned_cols=130  Identities=8%  Similarity=0.151  Sum_probs=73.8

Q ss_pred             eEEEEEcC--CCCEEEEEeCCCcEEEEecCccccccCCC----C--ccccccccccCCCCCeeeeeeEEeC--CCCCEEE
Q 013578          302 VTWLCFAP--NSEQIITASKDGTLRVWNINVRYHLDEDP----K--TLKVLPIPLLDSNGATLQYDRLSLS--SDGKILA  371 (440)
Q Consensus       302 v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~  371 (440)
                      |+.|....  +...|+.|..||.|.+|.++.-.......    .  ..+....|.... .-...+..+++.  ...+++|
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEE
Confidence            55554433  45678999999999999875321100000    0  000000111111 112356778888  7888999


Q ss_pred             EecC-CEEEEEEcCC--ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          372 ATHG-STLQWLSVET--GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       372 ~~~~-~~i~i~d~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ++++ ..|.||-...  .+....-...|...|.+|+|-++..... +. ..|++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~-G~-v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPN-GH-VKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCc-cc-eEEEEEeccCcEEEEEE
Confidence            9874 5666654433  2221111123666799999998751111 11 37888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.95  E-value=0.061  Score=43.86  Aligned_cols=79  Identities=16%  Similarity=0.208  Sum_probs=53.6

Q ss_pred             cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCc
Q 013578          308 APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETG  386 (440)
Q Consensus       308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~  386 (440)
                      ..++.+|++.+.+|.+++||+.+.+...........+.............|..+.++.+|.-+++-++|..+.|+..-+
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            3478899999999999999999887654332222222110011113455688899999999888877888888886544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.85  E-value=0.71  Score=36.85  Aligned_cols=55  Identities=11%  Similarity=0.168  Sum_probs=37.3

Q ss_pred             EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578          105 CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus       105 ~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      .|..+.....|.+|++........    .....-+.|..+.++..|+++++.-.+....
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~----~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~   84 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLL----CTFSTVGRVLQLVYSEAGDYLVTLEEKNKRS   84 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCcee----EEEcchhheeEEEeccccceEEEEEeecCCc
Confidence            443334556799999985444322    2223338899999999999999987665444

>PHA02713 hypothetical protein; Provisional

Probab=95.73  E-value=0.58  Score=44.61  Aligned_cols=95  Identities=4%  Similarity=-0.036  Sum_probs=49.6

Q ss_pred             eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC------CEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578          230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA------DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT  303 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~  303 (440)
                      .+..||..+.+-...-.............-+++..+.|+.++      .+..||....     ..+..+..+........
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-----~~W~~~~~m~~~r~~~~  507 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTY-----NGWELITTTESRLSALH  507 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCC-----CCeeEccccCcccccce
Confidence            477788876643221111111112222233577777777542      3566776541     11333334433333333


Q ss_pred             EEEEcCCCCEEEEEeCCC--cEEEEecCcc
Q 013578          304 WLCFAPNSEQIITASKDG--TLRVWNINVR  331 (440)
Q Consensus       304 ~~~~~p~~~~l~s~~~dg--~i~iwd~~~~  331 (440)
                      .+.+  +++..++|+.|+  .+..||..+.
T Consensus       508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        508 TILH--DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             eEEE--CCEEEEEeeecceeehhhcCcccc
Confidence            3333  678888999888  6667777654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.67  E-value=0.079  Score=52.10  Aligned_cols=90  Identities=10%  Similarity=-0.002  Sum_probs=57.3

Q ss_pred             EEEEeeCCceEEEEeCCCCce-eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec-c
Q 013578          221 IIASCSEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG-H  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h  298 (440)
                      ..+.+..|+.|++..+..... +..+. -....+|++|+|.|+.+++|...|++.-|.......   .   .+....- .
T Consensus       170 n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~---~ip~Pp~~e  242 (1405)
T KOG3630|consen  170 NSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---S---EIPEPPVEE  242 (1405)
T ss_pred             hhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccccee---e---cccCCCcCC
Confidence            456667788788876543222 22222 244678999999999999999999998887532210   0   0111100 1


Q ss_pred             ccceEEEEEcCCCCEEEEE
Q 013578          299 KSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~  317 (440)
                      ...|.+|.|-....+++.-
T Consensus       243 ~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  243 NYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             CcceeEEEEecceeEEEEe
Confidence            4679999998777766544

>PHA03098 kelch-like protein; Provisional

Probab=95.67  E-value=1.1  Score=42.75  Aligned_cols=104  Identities=13%  Similarity=0.042  Sum_probs=48.9

Q ss_pred             EEEEeeCC------ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC-----CEEEEEeEecCCCceeee
Q 013578          221 IIASCSEG------TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA-----DVKVWEIVYSKDGLVKAV  289 (440)
Q Consensus       221 ~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~  289 (440)
                      +++.|+.+      ..+..||..+.+....-.............-+++.++.|+.++     .+..||.....      +
T Consensus       297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~------W  370 (534)
T PHA03098        297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK------W  370 (534)
T ss_pred             EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc------e
Confidence            55555543      2477888877654322111111111122233677888887653     35566654322      2


Q ss_pred             eeeeeeeccccceEEEEEcCCCCEEEEEeCC------CcEEEEecCccc
Q 013578          290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKD------GTLRVWNINVRY  332 (440)
Q Consensus       290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d------g~i~iwd~~~~~  332 (440)
                      .....+...........  -++..++.|+.+      ..+..||..+..
T Consensus       371 ~~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        371 REEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             eeCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            12222211111111122  256666777632      357788887543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.56  E-value=0.65  Score=45.24  Aligned_cols=79  Identities=20%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             CeeeeeeEEeCCCCCEEEEecCCEEEEEEcCC----------ccc--h-h-------hhhccccCCeEEEEecCCCCCCC
Q 013578          354 ATLQYDRLSLSSDGKILAATHGSTLQWLSVET----------GKV--L-D-------TAEKAHEGEITCMAWAPKTIPMG  413 (440)
Q Consensus       354 ~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~----------~~~--~-~-------~~~~~h~~~v~~v~~~~~~~~~~  413 (440)
                      ....|..+.++|+|++||..+...|.|..+..          |+.  . .       .+...+...|..+.|+|.+    
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s----  158 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS----  158 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC----
Confidence            34568899999999999986655555554421          111  0 0       0112345579999999985    


Q ss_pred             CCcceEEEEeeCCCeEEEEeCCCC
Q 013578          414 NQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       414 ~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                       ..+..|+.-.+|+++|+||+...
T Consensus       159 -~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  159 -ESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             -CCCCeEEEEecCCEEEEEecCCC
Confidence             33367888888999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.49  E-value=0.57  Score=42.06  Aligned_cols=148  Identities=16%  Similarity=0.071  Sum_probs=72.0

Q ss_pred             cccEEEecCCCCeEEEEe-----------cCC-CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578          251 KNNMAAISPNGRFLAAAA-----------FTA-DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       251 ~v~~~~~s~~~~~l~~~~-----------~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                      ....++|.++|+++++-.           ..+ .|.+++-.. .++....   ...+.........+++.+++ +++ ++
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~d-gdG~~d~---~~vfa~~l~~p~Gi~~~~~G-lyV-~~   88 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDAD-GDGKYDK---SNVFAEELSMVTGLAVAVGG-VYV-AT   88 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCC-CCCCcce---eEEeecCCCCccceeEecCC-EEE-eC
Confidence            356788888888776643           122 566665322 1222211   12222223456889999988 444 44


Q ss_pred             CCCcEEEEecCccccccCCCCccccccccccCC-CCCeeeeeeEEeCCCCCEEEE-ecC-------------------CE
Q 013578          319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS-NGATLQYDRLSLSSDGKILAA-THG-------------------ST  377 (440)
Q Consensus       319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~-~~~-------------------~~  377 (440)
                      .....++.|.........   ..+.+-...... ..+......++|.|||.+.++ ++.                   +.
T Consensus        89 ~~~i~~~~d~~gdg~ad~---~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        89 PPDILFLRDKDGDDKADG---EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             CCeEEEEeCCCCCCCCCC---ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence            443333435442211100   011110000000 011233567999999986654 321                   34


Q ss_pred             EEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      |.-++..+++.. .+..+ -.....++|++++
T Consensus       166 i~r~~pdg~~~e-~~a~G-~rnp~Gl~~d~~G  195 (367)
T TIGR02604       166 LFRYNPDGGKLR-VVAHG-FQNPYGHSVDSWG  195 (367)
T ss_pred             EEEEecCCCeEE-EEecC-cCCCccceECCCC
Confidence            555666554432 22122 2346789999987

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.42  E-value=0.95  Score=41.79  Aligned_cols=70  Identities=7%  Similarity=0.164  Sum_probs=47.7

Q ss_pred             cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEEEecC
Q 013578          253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNIN  329 (440)
Q Consensus       253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~  329 (440)
                      ..+.|+|....|++-.....=.+++++....      +....+ ...+.|.|.+|.+||+.|+.+- ..=.-++||-.
T Consensus       116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s------rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSS------RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CcccccCCCceEEEEecCceeEeeeeeeCCc------eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            4578999999998887766656777765441      112223 3567899999999999876553 33346788754

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.40  E-value=0.75  Score=43.83  Aligned_cols=183  Identities=11%  Similarity=0.137  Sum_probs=92.7

Q ss_pred             EEEEeeCC------ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC-C-----CEEEEEeEecCCCceee
Q 013578          221 IIASCSEG------TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT-A-----DVKVWEIVYSKDGLVKA  288 (440)
Q Consensus       221 ~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g-----~i~i~d~~~~~~~~~~~  288 (440)
                      +++.|+.+      ..+..||..+++..............-...-++..+++|+.| |     .+..||.+..+      
T Consensus       287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~------  360 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ------  360 (571)
T ss_pred             EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc------
Confidence            66666666      358888988774433222222122222223356888899988 3     35666665433      


Q ss_pred             eeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc-----EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT-----LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                      +..+..+...........+  +|...+.|+.||.     |-.||..+...-        ... +... .  ..  ..-..
T Consensus       361 W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~--------~va-~m~~-~--r~--~~gv~  424 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT--------PVA-PMLT-R--RS--GHGVA  424 (571)
T ss_pred             eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc--------ccC-CCCc-c--ee--eeEEE
Confidence            3333333333333222333  6888899998875     556766643221        100 0000 0  00  11222


Q ss_pred             CCCCCEEEEec-C------CEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe-----E
Q 013578          364 SSDGKILAATH-G------STLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK-----V  429 (440)
Q Consensus       364 s~~g~~l~~~~-~------~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~-----i  429 (440)
                      .-+|++.+.|+ +      ..+..||..+++-  +..+.  -...-..++.-.+         .+.+.||.|+.     |
T Consensus       425 ~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~---------~iYvvGG~~~~~~~~~V  493 (571)
T KOG4441|consen  425 VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNG---------KIYVVGGFDGTSALSSV  493 (571)
T ss_pred             EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECC---------EEEEECCccCCCccceE
Confidence            23566555543 2      4688899877653  22221  1111122444443         68888887763     5


Q ss_pred             EEEeCCC
Q 013578          430 KLWLAPS  436 (440)
Q Consensus       430 ~vw~~~~  436 (440)
                      ..||..+
T Consensus       494 E~ydp~~  500 (571)
T KOG4441|consen  494 ERYDPET  500 (571)
T ss_pred             EEEcCCC
Confidence            5566654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.35  E-value=0.68  Score=42.65  Aligned_cols=121  Identities=16%  Similarity=0.274  Sum_probs=69.6

Q ss_pred             cccceEEEEEcCC----CCEEEEEeCCCcEEEEecCccccccCCCCccccc----cccccCCCCCeeeeeeEEeCCCCCE
Q 013578          298 HKSAVTWLCFAPN----SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL----PIPLLDSNGATLQYDRLSLSSDGKI  369 (440)
Q Consensus       298 h~~~v~~~~~~p~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~  369 (440)
                      .-..|.++.|.|-    ...|...-....|.+|.+.....-....-.....    +++..        -..+.|+|...+
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvL--------pQGCVWHPk~~i  126 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVL--------PQGCVWHPKKAI  126 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccC--------CCcccccCCCce
Confidence            3356899999994    3345566677899999986221100000000000    11111        124889999998


Q ss_pred             EEEecCCEE-EEEEcCCc--cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          370 LAATHGSTL-QWLSVETG--KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       370 l~~~~~~~i-~i~d~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      |++=....+ .++++...  +....+  ...+.|.|.+|.+||.       ++++..|+.=.-+|||-.
T Consensus       127 L~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~DG~-------RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  127 LTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACWTKDGQ-------RLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEecCcCC-------EEEEEeCCeEEEEEecCc
Confidence            887432222 34444333  233333  3667899999999983       555555666667888754

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.34  E-value=0.077  Score=29.76  Aligned_cols=31  Identities=23%  Similarity=0.206  Sum_probs=26.3

Q ss_pred             cceeEEEEccCC---CEEEEeeCCCcEEEEecCC
Q 013578           92 DSVTGLCFSSDG---KCLATACADGVIRVHKLDD  122 (440)
Q Consensus        92 ~~V~~l~~s~dg---~~l~t~s~dg~v~vW~~~~  122 (440)
                      ++|++++|||+.   .+|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            579999999844   5888888889999999985

It contains a characteristic DLL sequence motif.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.33  E-value=1.9  Score=38.16  Aligned_cols=98  Identities=14%  Similarity=0.155  Sum_probs=47.1

Q ss_pred             cccceEEEEEcCCCCEEEEEeCCC-----cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          298 HKSAVTWLCFAPNSEQIITASKDG-----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       298 h~~~v~~~~~~p~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                      -..++..+.|+|....+++=|..|     .-|||-+++...      ..+.    +... .....+..=-|.|||..|.-
T Consensus       186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~------~~~~----v~~~-~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS------NVKK----VHRR-MEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---------EE----SS----TTEEEEEEEE-TTSS-EEE
T ss_pred             cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC------ccee----eecC-CCCcccccccccCCCCEEEE
Confidence            456788899999776666555433     236776653211      1111    1111 11234566779999996654


Q ss_pred             -e-----cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          373 -T-----HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       373 -~-----~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                       +     .+..|.-+|..+++.....   .......+--++|+
T Consensus       255 ~~~~~~~~~~~i~~~d~~t~~~~~~~---~~p~~~H~~ss~Dg  294 (386)
T PF14583_consen  255 DSYTPGGQDFWIAGYDPDTGERRRLM---EMPWCSHFMSSPDG  294 (386)
T ss_dssp             EEEETTT--EEEEEE-TTT--EEEEE---EE-SEEEEEE-TTS
T ss_pred             EeecCCCCceEEEeeCCCCCCceEEE---eCCceeeeEEcCCC
Confidence             2     1346777888887653322   22234455566776

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=95.22  E-value=3.8  Score=41.00  Aligned_cols=161  Identities=14%  Similarity=0.175  Sum_probs=95.2

Q ss_pred             CCCCcccEEEec---C----CCCeEEEEecCCCEEEEEeEecCC-------Cceeeeeeeeeeec---cccceEEEEEcC
Q 013578          247 TNQLKNNMAAIS---P----NGRFLAAAAFTADVKVWEIVYSKD-------GLVKAVTSVMQLKG---HKSAVTWLCFAP  309 (440)
Q Consensus       247 ~~~~~v~~~~~s---~----~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~---h~~~v~~~~~~p  309 (440)
                      ....+|..++|.   .    ..++|++- ....+.|+.....+.       .......++..+..   ...+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            346678888887   2    22455554 456677777322221       01112223333332   234677899999


Q ss_pred             -CCCEEEEEeCCCcEEEEecCccccccCC-CCccccccccc-cCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCc
Q 013578          310 -NSEQIITASKDGTLRVWNINVRYHLDED-PKTLKVLPIPL-LDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETG  386 (440)
Q Consensus       310 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~  386 (440)
                       +...||.....|...||++......... ..........+ ... ........+.|.++-..|++++...+.++|+++.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~-~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDP-EELSNWKRILWVSDSNRLLVCNRSKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCC-cccCcceeeEecCCCCEEEEEcCCceEEEECCCC
Confidence             4568999999999999999322111110 00000000011 111 1123466899999999999999999999999988


Q ss_pred             cchh-hhhccccCCeEEEEecCCC
Q 013578          387 KVLD-TAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       387 ~~~~-~~~~~h~~~v~~v~~~~~~  409 (440)
                      .... .........|.++.-++..
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~  258 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDN  258 (765)
T ss_pred             CccchhccCCChhheeeEEecCCc
Confidence            7644 2223355678888888873

These proteins are found in fungi.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.16  E-value=1.7  Score=36.56  Aligned_cols=171  Identities=15%  Similarity=0.143  Sum_probs=97.8

Q ss_pred             CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 013578          247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW  326 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iw  326 (440)
                      +....+.++.|+|+.+.|++......-.++=-..++   .   -....+.+. .....|++..++.+.++--.++.+.++
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd---l---irtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~  155 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD---L---IRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLF  155 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCc---e---EEEeccccc-CChhHeEEecCCEEEEEehhcceEEEE
Confidence            334458999999999999888776665555332222   1   012223332 223567777778877777788999988


Q ss_pred             ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc--chhhhhcccc------
Q 013578          327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK--VLDTAEKAHE------  397 (440)
Q Consensus       327 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~--~~~~~~~~h~------  397 (440)
                      .+.........    ....++.............++|+|..+.|...- -+-+.||.+..+.  ........+.      
T Consensus       156 ~vd~~t~~~~~----~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f  231 (316)
T COG3204         156 TVDADTTVISA----KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF  231 (316)
T ss_pred             EEcCCccEEec----cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence            87754322111    111222333333355577899999988777765 3445555544222  1111111122      


Q ss_pred             -CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          398 -GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       398 -~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                       ..|.++.|++..       +.+|+-+.+++.+.-.+..
T Consensus       232 ~~DvSgl~~~~~~-------~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         232 VLDVSGLEFNAIT-------NSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             eeccccceecCCC-------CcEEEEecCCceEEEEecC
Confidence             246777888643       1577777777776665554

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.11  E-value=1.5  Score=39.15  Aligned_cols=101  Identities=13%  Similarity=0.109  Sum_probs=70.5

Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCE
Q 013578          298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGST  377 (440)
Q Consensus       298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  377 (440)
                      ..++|.++.|++|.+.||.--.|.+|.+++.........          ...........|....|+.+ .-+|.-.+..
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~----------~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G  133 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE----------YTQECKTKNANILGFCWTSS-TEIAFITDQG  133 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH----------HHHHhccCcceeEEEEEecC-eeEEEEecCC
Confidence            457999999999999999999999999998843211110          01112222344777888877 5566666667


Q ss_pred             EEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      +.+|-....+.-.++.+.|...|+-..|+++.
T Consensus       134 ~e~y~v~pekrslRlVks~~~nvnWy~yc~et  165 (657)
T KOG2377|consen  134 IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPET  165 (657)
T ss_pred             eEEEEEchhhhhhhhhhhcccCccEEEEcccc
Confidence            77777766554444446788899999999985

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.90  E-value=0.29  Score=38.37  Aligned_cols=36  Identities=22%  Similarity=0.548  Sum_probs=29.3

Q ss_pred             CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      .|.+++|+|.|  .+.....+|++...+|.|.||....
T Consensus        87 ~vv~~aWSP~G--l~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSG--LGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCC--CCCCCceEEEEEcCCCeEEEEecCC
Confidence            78999999987  3333347999999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.89  E-value=0.8  Score=46.37  Aligned_cols=148  Identities=10%  Similarity=0.167  Sum_probs=86.7

Q ss_pred             ecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE--------cCCCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578          268 AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF--------APNSEQIITASKDGTLRVWNINVRYHLDEDPK  339 (440)
Q Consensus       268 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  339 (440)
                      +.|..+.+|+...+.        ....+.+....|..+..        -|.=+++..-+.--.|.++-+.-.........
T Consensus        96 TiDn~L~lWny~~~~--------e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~  167 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDN--------ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI  167 (1311)
T ss_pred             EeCCeEEEEEcCCCC--------ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence            458899999998754        34444454555555443        22223443333344567765543221111111


Q ss_pred             ccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEE--EEEcCCc---c--------------c---hhhhhcccc
Q 013578          340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ--WLSVETG---K--------------V---LDTAEKAHE  397 (440)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~--i~d~~~~---~--------------~---~~~~~~~h~  397 (440)
                      ....     +........|.++....+|+.+.+|.||.|+  +|....|   +              .   +..+...+.
T Consensus       168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~  242 (1311)
T KOG1900|consen  168 FNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK  242 (1311)
T ss_pred             cccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence            1111     1112234558899999999999999988554  2222222   0              0   111112467


Q ss_pred             CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ++|..++....-        ..|.+-++.|+|++|++..
T Consensus       243 dpI~qi~ID~SR--------~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  243 DPIRQITIDNSR--------NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CcceeeEecccc--------ceeeeeccCceEEEEEccC
Confidence            799999998876        7889999999999999976

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.74  E-value=1.2  Score=32.62  Aligned_cols=119  Identities=13%  Similarity=0.058  Sum_probs=66.9

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC--CCCEEEEecCCEEEEEEc
Q 013578          306 CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS--DGKILAATHGSTLQWLSV  383 (440)
Q Consensus       306 ~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~~~i~i~d~  383 (440)
                      .|......|++++.-|.|.|++..........    ..-+............+.+-.|.|  +...|+.|+...+..||+
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~----~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV   80 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGR----QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV   80 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCcccccccc----ccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence            45555557888888889999987654322111    111112222222222233334433  345888999999999999


Q ss_pred             CCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       384 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ....-+..-+  -.+.|+++.+-.-+    .....+++.|| +..|.-||.+
T Consensus        81 ~~N~d~Fyke--~~DGvn~i~~g~~~----~~~~~l~ivGG-ncsi~Gfd~~  125 (136)
T PF14781_consen   81 ENNSDLFYKE--VPDGVNAIVIGKLG----DIPSPLVIVGG-NCSIQGFDYE  125 (136)
T ss_pred             ccCchhhhhh--CccceeEEEEEecC----CCCCcEEEECc-eEEEEEeCCC
Confidence            9887665432  34668888775332    11114556555 5555555443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.50  E-value=1.7  Score=39.38  Aligned_cols=149  Identities=17%  Similarity=0.096  Sum_probs=86.8

Q ss_pred             CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC-------eEEEEecCCCEEEEEeEecCCCceee
Q 013578          216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR-------FLAAAAFTADVKVWEIVYSKDGLVKA  288 (440)
Q Consensus       216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~  288 (440)
                      .+...++..+.....++-.|++.|+.+..+..+...  -+.|.|+.+       .-++|-.+..|.-.|.+....  ...
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN--Ki~  552 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN--KIK  552 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC--cee
Confidence            344435556667777888999999999998877654  567777532       223444455555555543321  001


Q ss_pred             eeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578          289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK  368 (440)
Q Consensus       289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  368 (440)
                      ......+.+ .....|..- -...++|.+|..|-|++||--.....              ...++-...|..+..+.+|+
T Consensus       553 v~esKdY~t-Kn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAK--------------talP~lG~aIk~idvta~Gk  616 (776)
T COG5167         553 VVESKDYKT-KNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAK--------------TALPGLGDAIKHIDVTANGK  616 (776)
T ss_pred             eeeehhccc-ccccccccc-ccCceEEEecCCCceeeehhhcchhh--------------hcCcccccceeeeEeecCCc
Confidence            001111111 111222222 24558999999999999995422110              11122234467788999999


Q ss_pred             EEEEecCCEEEEEEcC
Q 013578          369 ILAATHGSTLQWLSVE  384 (440)
Q Consensus       369 ~l~~~~~~~i~i~d~~  384 (440)
                      ++.+.....+.+-|+.
T Consensus       617 ~ilaTCk~yllL~d~~  632 (776)
T COG5167         617 HILATCKNYLLLTDVP  632 (776)
T ss_pred             EEEEeecceEEEEecc
Confidence            9988888878777763

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.26  E-value=0.19  Score=28.19  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=25.6

Q ss_pred             cceEEEEEcCCC---CEEEEEeCCCcEEEEecCc
Q 013578          300 SAVTWLCFAPNS---EQIITASKDGTLRVWNINV  330 (440)
Q Consensus       300 ~~v~~~~~~p~~---~~l~s~~~dg~i~iwd~~~  330 (440)
                      +.|.++.|+|+.   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4788887889999999984

It contains a characteristic DLL sequence motif.

>PRK10115 protease 2; Provisional

Probab=94.21  E-value=6.2  Score=38.87  Aligned_cols=177  Identities=9%  Similarity=-0.021  Sum_probs=83.7

Q ss_pred             CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC------CCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT------ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA  301 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~  301 (440)
                      ...|++.|+.+++.+...-... . ..++|.+|++.|+....+      ..|+.+++.+....    -..+.  ......
T Consensus       152 ~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~----d~lv~--~e~~~~  223 (686)
T PRK10115        152 QYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQ----DELVY--EEKDDT  223 (686)
T ss_pred             EEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhH----CeEEE--eeCCCC
Confidence            3458888888776432221111 1 458999999877776543      23555555444211    11222  222222


Q ss_pred             eE-EEEEcCCCCEEEEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec---
Q 013578          302 VT-WLCFAPNSEQIITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH---  374 (440)
Q Consensus       302 v~-~~~~~p~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---  374 (440)
                      .. .+..+.++++++..+   .++.+.+++......     . ...   ......+..  .. +. ...+.+++...   
T Consensus       224 ~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-----~-~~~---~~~~~~~~~--~~-~~-~~~~~ly~~tn~~~  290 (686)
T PRK10115        224 FYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-----E-PFV---FLPRRKDHE--YS-LD-HYQHRFYLRSNRHG  290 (686)
T ss_pred             EEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-----C-ceE---EEECCCCCE--EE-EE-eCCCEEEEEEcCCC
Confidence            22 333444777665443   345788888542110     0 000   000111111  11 11 22233333332   


Q ss_pred             -CCEEEEEEcCCccchhhhhccc-c-CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          375 -GSTLQWLSVETGKVLDTAEKAH-E-GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       375 -~~~i~i~d~~~~~~~~~~~~~h-~-~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                       ...|...++........+ ..+ . ..|..+.+..+         .++++...+|.-+++-++
T Consensus       291 ~~~~l~~~~~~~~~~~~~l-~~~~~~~~i~~~~~~~~---------~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        291 KNFGLYRTRVRDEQQWEEL-IPPRENIMLEGFTLFTD---------WLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             CCceEEEecCCCcccCeEE-ECCCCCCEEEEEEEECC---------EEEEEEEeCCEEEEEEEc
Confidence             234444454421112222 234 3 36888888855         577787778877766554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.15  E-value=1.3  Score=44.23  Aligned_cols=146  Identities=10%  Similarity=-0.028  Sum_probs=83.2

Q ss_pred             CcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeee---eeeeccccceEEEEEcCCCC-EEEEEeCCCcE
Q 013578          250 LKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSV---MQLKGHKSAVTWLCFAPNSE-QIITASKDGTL  323 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i  323 (440)
                      .++..+...+|+...++...  +-.|..||++.-.........++   ...........++.|.|.-. ..+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            34556667778766655543  33688999864332111111111   11111223456788888543 35667788999


Q ss_pred             EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc--cchhhhhccccCCe
Q 013578          324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG--KVLDTAEKAHEGEI  400 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~--~~~~~~~~~h~~~v  400 (440)
                      ++..+.......+              ...-....++++|+|.|+.++.|. +|.+.-|...-.  ..+..........|
T Consensus       181 ~V~~~~~~~~~v~--------------s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrv  246 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVT--------------SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRV  246 (1405)
T ss_pred             hhhhhhhhhhhhc--------------ccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcce
Confidence            8887763221100              011123478999999999999997 677776654322  22222221224689


Q ss_pred             EEEEecCCC
Q 013578          401 TCMAWAPKT  409 (440)
Q Consensus       401 ~~v~~~~~~  409 (440)
                      .+|+|-...
T Consensus       247 l~v~Wl~t~  255 (1405)
T KOG3630|consen  247 LSVTWLSTQ  255 (1405)
T ss_pred             eEEEEecce
Confidence            999998775

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.10  E-value=4.1  Score=36.66  Aligned_cols=18  Identities=17%  Similarity=0.505  Sum_probs=14.3

Q ss_pred             cceeEEEEccCCCEEEEe
Q 013578           92 DSVTGLCFSSDGKCLATA  109 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~  109 (440)
                      .....|+|.++|+++++-
T Consensus        14 ~~P~~ia~d~~G~l~V~e   31 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAE   31 (367)
T ss_pred             CCCceeeECCCCCEEEEe
Confidence            456789999999877764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA03098 kelch-like protein; Provisional

Probab=94.08  E-value=5.4  Score=38.10  Aligned_cols=95  Identities=14%  Similarity=0.148  Sum_probs=44.3

Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC--------CEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA--------DVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      ..+..||..+++-...-..........+...++..++.|+.++        .+.+||....+      +..+..+.....
T Consensus       406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~------W~~~~~~~~~r~  479 (534)
T PHA03098        406 KTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK------WTELSSLNFPRI  479 (534)
T ss_pred             ceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc------eeeCCCCCcccc
Confidence            4588899876543221111111111122233566777776432        26777765432      112211111111


Q ss_pred             ceEEEEEcCCCCEEEEEeCC-----CcEEEEecCcc
Q 013578          301 AVTWLCFAPNSEQIITASKD-----GTLRVWNINVR  331 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~  331 (440)
                      ....+.+  ++..++.|+.+     ..|.+||..+.
T Consensus       480 ~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        480 NASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             cceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            1122222  66667777654     36777887754

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.97  E-value=3.5  Score=35.03  Aligned_cols=245  Identities=17%  Similarity=0.211  Sum_probs=126.4

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc--cee-eEEecCC----CCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSK--SFK-FLRINLP----PGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~--~~~-~~~~~~~----~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      .-+.|+++|.+.+-++...-+...+||.......  ... ...+..+    ....++.+.|+....+.++....      
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~------   97 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI------   97 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc------
Confidence            4578999999988888888899999998722111  111 1111111    12457777777665443332211      


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce----
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL----  241 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~----  241 (440)
                                                                         .+.-.++.+++||+|.-|...-+..    
T Consensus        98 ---------------------------------------------------~~~a~Fif~tEdGTisaW~p~v~~t~~~~  126 (336)
T TIGR03118        98 ---------------------------------------------------TGPSRFLFVTEDGTLSGWAPALGTTRMTR  126 (336)
T ss_pred             ---------------------------------------------------ccceeEEEEeCCceEEeecCcCCcccccc
Confidence                                                               0111578889999999998543222    


Q ss_pred             -eeeeeCC-CCc-ccEEEecC--CCCeEEEEe-cCCCEEEEEeEecCCC---ceeeee--------eeeeeeccccceEE
Q 013578          242 -LGNVDTN-QLK-NNMAAISP--NGRFLAAAA-FTADVKVWEIVYSKDG---LVKAVT--------SVMQLKGHKSAVTW  304 (440)
Q Consensus       242 -~~~~~~~-~~~-v~~~~~s~--~~~~l~~~~-~dg~i~i~d~~~~~~~---~~~~~~--------~~~~~~~h~~~v~~  304 (440)
                       ...+... ... -+.+++..  .+.+|+.+. ..++|.+||-...+..   ......        -+..+. ..--|+-
T Consensus       127 ~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig-~~lyVtY  205 (336)
T TIGR03118       127 AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLG-GTLYVTY  205 (336)
T ss_pred             cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEEC-CeEEEEE
Confidence             1122211 122 23455543  356666664 5789999986543210   000000        000000 0001111


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC------CCCEEEEe-cCCE
Q 013578          305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS------DGKILAAT-HGST  377 (440)
Q Consensus       305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~g~~l~~~-~~~~  377 (440)
                      ..-.+++..=+.+..-|.|-+||+......+             ....+.-..-..|+..|      .|.+|+.- .||.
T Consensus       206 A~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r-------------~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~  272 (336)
T TIGR03118       206 AQQDADRNDEVAGAGLGYVNVFTLNGQLLRR-------------VASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGT  272 (336)
T ss_pred             EecCCcccccccCCCcceEEEEcCCCcEEEE-------------eccCCcccCCceeeeChhhhCCCCCCeEEeecCCce
Confidence            1112222222233344678888876432110             01111112223455544      45666653 3999


Q ss_pred             EEEEEcCCccchhhhhcccc-----CCeEEEEecCC
Q 013578          378 LQWLSVETGKVLDTAEKAHE-----GEITCMAWAPK  408 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~-----~~v~~v~~~~~  408 (440)
                      |..||..+|+.+..+.....     ..++.++|...
T Consensus       273 InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng  308 (336)
T TIGR03118       273 INAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNG  308 (336)
T ss_pred             eEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCC
Confidence            99999999998777743222     35788888874

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.93  E-value=1.8  Score=44.26  Aligned_cols=68  Identities=13%  Similarity=0.007  Sum_probs=42.4

Q ss_pred             eeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          357 QYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       357 ~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      .+.+..+......+..+..+.+-+|+.........+...+      ..+.+++        ..++++..||.+..||...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--------~~~v~~h~Dgs~~fWd~s~  265 (993)
T KOG1983|consen  200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNG------QLESRDG--------SHFVSYHTDGSYAFWDVSS  265 (993)
T ss_pred             ccceeeeecCCCcceeeeeeeeeehhcccccchhhccccc------ccCccCC--------ceEEEEEecCCEEeeecCC
Confidence            3444444445555555556666666655554444432111      1126666        8999999999999999988


Q ss_pred             CC
Q 013578          437 LE  438 (440)
Q Consensus       437 ~~  438 (440)
                      ++
T Consensus       266 g~  267 (993)
T KOG1983|consen  266 GK  267 (993)
T ss_pred             Cc
Confidence            63

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.86  E-value=3.4  Score=39.56  Aligned_cols=50  Identities=20%  Similarity=0.182  Sum_probs=36.7

Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEe
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVY  280 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  280 (440)
                      -.|+||+.. |+.+..+.-....+-.+.|+.+.. |++...+|++++|++..
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch
Confidence            348888865 777766654455778889987765 55667899999999853

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.75  E-value=7.1  Score=37.89  Aligned_cols=106  Identities=12%  Similarity=0.265  Sum_probs=70.6

Q ss_pred             CCeEEEEeeCCceEEEEeCCC-------C----c---------eeeeeeCCCCcccEEEec--CCCCeEEEEecCCCEEE
Q 013578          218 GSTIIASCSEGTDISIWHGKT-------G----K---------LLGNVDTNQLKNNMAAIS--PNGRFLAAAAFTADVKV  275 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~i  275 (440)
                      +..+|+.|.+||.|.+|..++       .    +         +-..+.. ...+..++++  ...++||+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEE
Confidence            334899999999999996521       0    0         1111222 3356778888  78889999999999999


Q ss_pred             EEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC---C---EEEEEeCCCcEEEEecC
Q 013578          276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS---E---QIITASKDGTLRVWNIN  329 (440)
Q Consensus       276 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~---~l~s~~~dg~i~iwd~~  329 (440)
                      |-+.......     ....-..|...|-+|+|-++.   .   +|++++-.|.+.+|++.
T Consensus       192 Faf~l~~~r~-----~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  192 FAFALVDERF-----YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEEecccccc-----ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            8876532110     000011255678899997743   2   78889999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.74  E-value=3.1  Score=33.71  Aligned_cols=91  Identities=16%  Similarity=0.201  Sum_probs=63.0

Q ss_pred             ccccCCCCCeEEEEeeCCceEEEEe--CCCCce-----eeeeeC----CCCcccEEEecCCCCeEEEEecCCCEEEEEeE
Q 013578          211 ATYGTADGSTIIASCSEGTDISIWH--GKTGKL-----LGNVDT----NQLKNNMAAISPNGRFLAAAAFTADVKVWEIV  279 (440)
Q Consensus       211 ~~~~~~~~~~~l~s~~~d~~i~vwd--~~~~~~-----~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  279 (440)
                      ...+..+.+.+.++-+.+-+|.-||  ..+|..     +..++.    .......+++..+|++.++.-..++|...|..
T Consensus       162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~  241 (310)
T KOG4499|consen  162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT  241 (310)
T ss_pred             cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence            3444556666777888888887777  555543     222322    11223456677788988888888999999998


Q ss_pred             ecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578          280 YSKDGLVKAVTSVMQLKGHKSAVTWLCFAP  309 (440)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  309 (440)
                      +++        .+.+++-....|+|++|--
T Consensus       242 tGK--------~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  242 TGK--------ILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCc--------EEEEEEcCCCceEEEEecC
Confidence            877        6666776788899999953

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.73  E-value=5  Score=36.10  Aligned_cols=160  Identities=13%  Similarity=0.153  Sum_probs=72.2

Q ss_pred             cCCCCCeEEEEee------CCceEEEEeCCCCceeeeeeCCCC---cccEEEecCCCCeEEEEe----------------
Q 013578          214 GTADGSTIIASCS------EGTDISIWHGKTGKLLGNVDTNQL---KNNMAAISPNGRFLAAAA----------------  268 (440)
Q Consensus       214 ~~~~~~~~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~----------------  268 (440)
                      +-|+|+ +++++-      .-|.+.++|-++.+..........   --..+.|.|..+.+++..                
T Consensus       137 clp~G~-imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~  215 (461)
T PF05694_consen  137 CLPDGR-IMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL  215 (461)
T ss_dssp             E-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred             ecCCcc-EEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence            356776 555542      224588889888887777654322   234577888888888763                


Q ss_pred             ----cCCCEEEEEeEecCCCceeeeeeeeeeecc--ccceEEEEEc--CCCCE-EEEEeCCCcEEEEec-CccccccCCC
Q 013578          269 ----FTADVKVWEIVYSKDGLVKAVTSVMQLKGH--KSAVTWLCFA--PNSEQ-IITASKDGTLRVWNI-NVRYHLDEDP  338 (440)
Q Consensus       269 ----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~--p~~~~-l~s~~~dg~i~iwd~-~~~~~~~~~~  338 (440)
                          ...++.+||+...+        .++++.-.  ......+.|.  |+..+ ++.+.-..+|..|-- +.+...    
T Consensus       216 ~~~~yG~~l~vWD~~~r~--------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~----  283 (461)
T PF05694_consen  216 EAGKYGHSLHVWDWSTRK--------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA----  283 (461)
T ss_dssp             HHH-S--EEEEEETTTTE--------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE----
T ss_pred             hcccccCeEEEEECCCCc--------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee----
Confidence                23569999996654        33333322  2235566664  44444 333334445554433 222110    


Q ss_pred             CccccccccccC------------CCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCcc
Q 013578          339 KTLKVLPIPLLD------------SNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGK  387 (440)
Q Consensus       339 ~~~~~~~~~~~~------------~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~  387 (440)
                       ..+.+.++...            ...-..-++.+.+|.|.++|.++.  .|.|+-||+....
T Consensus       284 -a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  284 -AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             -EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             -eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence             00111111110            111123478899999999999875  8999999997653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.63  E-value=2.6  Score=41.30  Aligned_cols=87  Identities=13%  Similarity=0.300  Sum_probs=52.6

Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEecCccc----cccCCCCcc--cccccc-ccCCCCCeeeeeeEEeCCCC---C-
Q 013578          300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRY----HLDEDPKTL--KVLPIP-LLDSNGATLQYDRLSLSSDG---K-  368 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~--~~~~~~-~~~~~~~~~~v~~~~~s~~g---~-  368 (440)
                      -.|..|.++|+|.+|+..|..| |.|-.+....    .........  +.+++. .+........|..+.|+|.+   . 
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3588899999999999888754 4554443210    000001111  111111 11223445679999999974   4 


Q ss_pred             EEEEecCCEEEEEEcCCcc
Q 013578          369 ILAATHGSTLQWLSVETGK  387 (440)
Q Consensus       369 ~l~~~~~~~i~i~d~~~~~  387 (440)
                      +++-.+|+.+++||+...+
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            5555889999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.60  E-value=0.48  Score=45.82  Aligned_cols=165  Identities=16%  Similarity=0.260  Sum_probs=82.0

Q ss_pred             cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC---CCCEEEEEeCCCcEEEEecCccccccCCCCcccccc
Q 013578          269 FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP  345 (440)
Q Consensus       269 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  345 (440)
                      .-|.+.+||+..-. |.....-.+.........+.-+.|.|   +.-++..+-.+++|++..++.........+..+...
T Consensus       151 ~vg~lfVy~vd~l~-G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d  229 (1283)
T KOG1916|consen  151 LVGELFVYDVDVLQ-GEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTD  229 (1283)
T ss_pred             HhhhhheeehHhhc-cccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCccc
Confidence            34678899986532 22222222333333333444455554   666777777888988877654322100001111111


Q ss_pred             ccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEc-----CCccchhhhhccccC-CeEEEEecCCC-CCCCCCcc
Q 013578          346 IPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSV-----ETGKVLDTAEKAHEG-EITCMAWAPKT-IPMGNQQV  417 (440)
Q Consensus       346 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~-----~~~~~~~~~~~~h~~-~v~~v~~~~~~-~~~~~~~~  417 (440)
                      ...+...-    +.--.+||||+.+|.. .||.+++|-+     ...+++... +.|++ +-.|.-|+... .....+.-
T Consensus       230 ~a~~~~g~----~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhew-kphd~~p~vC~lc~~~~~~~v~i~~w  304 (1283)
T KOG1916|consen  230 MAFFAEGV----LKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEW-KPHDKHPRVCWLCHKQEILVVSIGKW  304 (1283)
T ss_pred             HHHHhhch----hhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhcc-CCCCCCCceeeeeccccccCCcccee
Confidence            11111110    1113389999999874 5887776654     333444444 46763 33333344332 11122333


Q ss_pred             eEEEEeeC-CCeEEEEeCCCCCC
Q 013578          418 SVLATSSV-DKKVKLWLAPSLES  439 (440)
Q Consensus       418 ~~l~t~~~-Dg~i~vw~~~~~~~  439 (440)
                      .++++++. ...+++|.-...+|
T Consensus       305 ~~~Itttd~nre~k~w~~a~w~C  327 (1283)
T KOG1916|consen  305 VLRITTTDVNREEKFWAEAPWQC  327 (1283)
T ss_pred             EEEEecccCCcceeEeeccchhh
Confidence            45666655 56699998766554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.43  E-value=0.66  Score=25.91  Aligned_cols=41  Identities=17%  Similarity=0.282  Sum_probs=29.2

Q ss_pred             CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEe
Q 013578          216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI  257 (440)
Q Consensus       216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  257 (440)
                      |+++.++++...++.|.++|..+++.+..+..... ...++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence            45665677777789999999999988888776432 334444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.34  E-value=6  Score=35.81  Aligned_cols=115  Identities=10%  Similarity=0.053  Sum_probs=66.0

Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEE
Q 013578          299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTL  378 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i  378 (440)
                      ...+.++.+.+++..++++ .+|.+.. ....+..       .................+..+.|.+++..+++|..|.+
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~-------~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v  350 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLT-------EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGIL  350 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCc-------ccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcE
Confidence            4568899999998876655 5566543 3222210       00000000011111234778999999999999998877


Q ss_pred             EEEEcCCccchhhhh--ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578          379 QWLSVETGKVLDTAE--KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW  432 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw  432 (440)
                      .... ..|+.-....  ..-....+.+.|.+++         .....+.+|.|.-|
T Consensus       351 ~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~---------~g~~~G~~G~il~~  396 (398)
T PLN00033        351 LRST-DGGKSWKRDKGADNIAANLYSVKFFDDK---------KGFVLGNDGVLLRY  396 (398)
T ss_pred             EEeC-CCCcceeEccccCCCCcceeEEEEcCCC---------ceEEEeCCcEEEEe
Confidence            6653 3333322211  1234578899998774         45555678887665

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.33  E-value=0.02  Score=50.74  Aligned_cols=142  Identities=15%  Similarity=0.217  Sum_probs=95.9

Q ss_pred             EEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE-EEeCCCcEEEEecCccc
Q 013578          254 MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNINVRY  332 (440)
Q Consensus       254 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~~~dg~i~iwd~~~~~  332 (440)
                      ...|-+.+.-++.++.+..+..||-...         ...... ..+....++|.-++..++ .+-..+.+.+||+.+..
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq---------~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey  108 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQ---------VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY  108 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcc---------eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence            4567777777888888888888884211         111111 334556788888777654 44567899999998643


Q ss_pred             cccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCC
Q 013578          333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP  411 (440)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  411 (440)
                      -.+            ......+...  -+.|++.+..++.+. .+.+.+|+..+.+..... ..|...+++++|.+.+  
T Consensus       109 tqq------------LE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~lEd--  171 (615)
T KOG2247|consen  109 TQQ------------LESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVTLED--  171 (615)
T ss_pred             HHH------------HhccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhh-cccccceeEEEecccc--
Confidence            211            0111111111  278999999888876 789999999888777665 3499999999999985  


Q ss_pred             CCCCcceEEEEeeCCCeE
Q 013578          412 MGNQQVSVLATSSVDKKV  429 (440)
Q Consensus       412 ~~~~~~~~l~t~~~Dg~i  429 (440)
                             +.+.++.|..+
T Consensus       172 -------~vil~dcd~~L  182 (615)
T KOG2247|consen  172 -------YVILCDCDNTL  182 (615)
T ss_pred             -------eeeecCcHHHH
Confidence                   77777766543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.85  E-value=9.5  Score=36.74  Aligned_cols=173  Identities=17%  Similarity=0.134  Sum_probs=83.8

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      +..+....+.+-.+.|+.+. .|+.-..||++.||++-.......  ..........|..+.|..+|-.+++.++.    
T Consensus        76 L~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~--svg~e~~~~~I~ec~~f~~GVavlt~~g~----  148 (829)
T KOG2280|consen   76 LGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESN--SVGFESQMSDIVECRFFHNGVAVLTVSGQ----  148 (829)
T ss_pred             hHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhccc--ccccccccCceeEEEEecCceEEEecCCc----
Confidence            33333334589999999765 566678999999999865432211  00111122446666666666655555433    


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-cee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KLL  242 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~  242 (440)
                      .+.+.+.+..........+. ...+...|.....+....+                 .+...-..+ ..++..... ...
T Consensus       149 v~~i~~~~~~~~~~~~diP~-~~~~~~~Wt~~~~~~~~~~-----------------ll~v~~~v~-~~~~q~~~~~~q~  209 (829)
T KOG2280|consen  149 VILINGVEEPKLRKMPDIPY-NELPKSCWTVFQPHRQSTI-----------------LLDVDVAVG-LHICQVEESRVQL  209 (829)
T ss_pred             EEEEcCCCcchhhhCCCCCC-ccCCCcceeEecCCCccee-----------------EEeechhhh-hcccceecccccc
Confidence            33333333221111111000 0011123332222111110                 011100111 111211111 112


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecC
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK  282 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  282 (440)
                      ..+......+..+.+||+.++|+-=...|.|.+-+.+..+
T Consensus       210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ  249 (829)
T ss_pred             cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence            2233333567788999999999999999999988876544

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.78  E-value=6.5  Score=34.67  Aligned_cols=176  Identities=13%  Similarity=0.172  Sum_probs=90.4

Q ss_pred             CcccEEEecCCCCeEEEEecCCC------EEEEEeEecCCC-ceeeeeeeeeeecccc--------ceEEEEEcCCCCEE
Q 013578          250 LKNNMAAISPNGRFLAAAAFTAD------VKVWEIVYSKDG-LVKAVTSVMQLKGHKS--------AVTWLCFAPNSEQI  314 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~dg~------i~i~d~~~~~~~-~~~~~~~~~~~~~h~~--------~v~~~~~~p~~~~l  314 (440)
                      +..+.+.+.+++..+++.+.+|.      ++.+++...... ..........+..-.+        ..-+|++.++|.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            44677888876666777777777      666666542110 0011111222222222        34478887788877


Q ss_pred             EEEeCC------CcEEEEecCccccccCCCCcccccccccc--CCCCCeeeeeeEEeCCCCCEEEEe------cCC--E-
Q 013578          315 ITASKD------GTLRVWNINVRYHLDEDPKTLKVLPIPLL--DSNGATLQYDRLSLSSDGKILAAT------HGS--T-  377 (440)
Q Consensus       315 ~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~------~~~--~-  377 (440)
                      ++.-.+      ..|+.++.. +........ ...+.....  ........+-.++++|+|+.|.+.      .|+  . 
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~v-P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPV-PAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEcc-ccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            777666      778888866 322211100 000000000  222334457789999999944432      122  1 


Q ss_pred             ------EEE--EEcCC-ccc----hhhhhc----cccCCeEEEEecCCCCCCCCCcceEEEEee-----CCCeEEEEeCC
Q 013578          378 ------LQW--LSVET-GKV----LDTAEK----AHEGEITCMAWAPKTIPMGNQQVSVLATSS-----VDKKVKLWLAP  435 (440)
Q Consensus       378 ------i~i--~d~~~-~~~----~~~~~~----~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-----~Dg~i~vw~~~  435 (440)
                            +++  ||..+ ++.    ...+..    .....|..+.+-+++        ++|+-=-     ....++|+.+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~--------~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG--------RLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC--------cEEEEEccCCCCccceEEEEEEE
Confidence                  444  55554 322    222210    034578999999987        5555322     23456666554

>PRK10115 protease 2; Provisional

Probab=92.73  E-value=11  Score=37.21  Aligned_cols=60  Identities=15%  Similarity=0.173  Sum_probs=37.7

Q ss_pred             cceeEEEEccCCCEEEEeeC-----CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578           92 DSVTGLCFSSDGKCLATACA-----DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH  158 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~-----dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  158 (440)
                      -.+..+.+||||++|+.+..     ...|++-|+.++...     .....  ..-..++|.+|++.|+....
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-----~~~i~--~~~~~~~w~~D~~~~~y~~~  191 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-----PELLD--NVEPSFVWANDSWTFYYVRK  191 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-----Ccccc--CcceEEEEeeCCCEEEEEEe
Confidence            45778899999998886532     235778888765311     11111  11146899998887776654

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=92.71  E-value=2.9  Score=34.70  Aligned_cols=152  Identities=16%  Similarity=0.173  Sum_probs=76.4

Q ss_pred             EEEEeCCCCceeeeeeCC-CCcccEEEecCCCCeEEEEec-C--CCEEEEEeEecCCCceeeeeee-eeeeccccceEEE
Q 013578          231 ISIWHGKTGKLLGNVDTN-QLKNNMAAISPNGRFLAAAAF-T--ADVKVWEIVYSKDGLVKAVTSV-MQLKGHKSAVTWL  305 (440)
Q Consensus       231 i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~-~~~~~h~~~v~~~  305 (440)
                      -.+||+.+++.. .+... ..-...-.+-+||++|.+|+. +  ..+++++..... .. ..+... ..+. ...+--+.
T Consensus        48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~-~~-~~w~e~~~~m~-~~RWYpT~  123 (243)
T PF07250_consen   48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSD-GT-CDWTESPNDMQ-SGRWYPTA  123 (243)
T ss_pred             EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCC-CC-CCceECccccc-CCCccccc
Confidence            457898887653 22221 111223357789999999875 2  347777753301 00 011111 1111 22344455


Q ss_pred             EEcCCCCEEEEEeCCC-cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcC
Q 013578          306 CFAPNSEQIITASKDG-TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVE  384 (440)
Q Consensus       306 ~~~p~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~  384 (440)
                      ..-|||+.|+.|+.+. +..+|.-+....   .......+..  ............+...|+|++++.+..+ -.|||..
T Consensus       124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~---~~~~~~~l~~--~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~  197 (243)
T PF07250_consen  124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGP---GPVTLPFLSQ--TSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYK  197 (243)
T ss_pred             eECCCCCEEEEeCcCCCcccccCCccCCC---Cceeeecchh--hhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCC
Confidence            6678999998888763 233443321100   0000000000  0001111223357888999999888754 3466888


Q ss_pred             Cccchhhh
Q 013578          385 TGKVLDTA  392 (440)
Q Consensus       385 ~~~~~~~~  392 (440)
                      +.+.+..+
T Consensus       198 ~n~v~~~l  205 (243)
T PF07250_consen  198 TNTVVRTL  205 (243)
T ss_pred             CCeEEeeC
Confidence            87765544

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.15  E-value=9  Score=34.84  Aligned_cols=26  Identities=31%  Similarity=0.616  Sum_probs=20.2

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578          304 WLCFAPNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       304 ~~~~~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                      .+.|.|.-..|++++.+..+.-|...
T Consensus       179 Pl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  179 PLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             CeEEeecCCEEEEecCceeEEEecHH
Confidence            45677777788899888888888764

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.83  E-value=8.6  Score=35.39  Aligned_cols=61  Identities=10%  Similarity=0.077  Sum_probs=36.2

Q ss_pred             CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC
Q 013578          250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS  311 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  311 (440)
                      .....++|.|+|++|++--..|+|++++-.............+. .....+....|+++|+-
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~-~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIV-NDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCcee-ccCCCCceeeEEECCCc
Confidence            34678999999987766654699998874332210000010111 11135678999999974

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK13684 Ycf48-like protein; Provisional

Probab=91.80  E-value=8.8  Score=33.97  Aligned_cols=157  Identities=15%  Similarity=0.124  Sum_probs=86.1

Q ss_pred             CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578          249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI  328 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~  328 (440)
                      ...+..+.+.+++.+++++ ..|.+..- .+.+.    ..+..+  ...-...++++.+.|+++.++.+ ..|.+++=..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg----~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~  242 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQ----TAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDP  242 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCC----CeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccC
Confidence            3457788889988766555 45654421 11111    112122  12334678999999998876655 5576653222


Q ss_pred             CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhh--ccccCCeEEEEec
Q 013578          329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE--KAHEGEITCMAWA  406 (440)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~--~~h~~~v~~v~~~  406 (440)
                      ..+.       .......+.   ......+..+.+.+++.+++++.+|.+.. ....|+.-....  ..-....+.+.|.
T Consensus       243 d~G~-------sW~~~~~~~---~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~  311 (334)
T PRK13684        243 DDLE-------SWSKPIIPE---ITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFL  311 (334)
T ss_pred             CCCC-------ccccccCCc---cccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEe
Confidence            2221       111111000   01123466789999999999988887664 344444332221  1122357788887


Q ss_pred             CCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          407 PKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      .++        .. +..+..|.|..|+-
T Consensus       312 ~~~--------~~-~~~G~~G~il~~~~  330 (334)
T PRK13684        312 DPE--------KG-FVLGQRGVLLRYVG  330 (334)
T ss_pred             CCC--------ce-EEECCCceEEEecC
Confidence            664        44 44566898887764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=91.66  E-value=9.4  Score=34.00  Aligned_cols=74  Identities=14%  Similarity=0.070  Sum_probs=39.9

Q ss_pred             ccccccCCCCCeEEEEeeCCce--EEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecC
Q 013578          209 ASATYGTADGSTIIASCSEGTD--ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK  282 (440)
Q Consensus       209 ~~~~~~~~~~~~~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  282 (440)
                      ...-.+.++|+.+|+.+..|+.  +.+.|+.+++..+.-...........++++.+.++....+..++-.|+.+.+
T Consensus        38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e  113 (386)
T PF14583_consen   38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE  113 (386)
T ss_dssp             TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred             ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence            3334457889878887766654  7777888887765554433333356778888887766556677777765543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.53  E-value=1.3  Score=36.18  Aligned_cols=75  Identities=21%  Similarity=0.283  Sum_probs=50.9

Q ss_pred             EEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-------ccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-------GHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       255 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      +.+..++++|++-+.+|.+++||+...+..... ......+.       .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            345567889999999999999999766521110 00000111       3556789999998898777765 57889998


Q ss_pred             cCcc
Q 013578          328 INVR  331 (440)
Q Consensus       328 ~~~~  331 (440)
                      ..-+
T Consensus        94 ~~L~   97 (219)
T PF07569_consen   94 PDLG   97 (219)
T ss_pred             cccc
Confidence            7643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.52  E-value=11  Score=34.35  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=33.7

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCC
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDAS  124 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~  124 (440)
                      ..|......+.+++.+|++++.|+...=|.|.++|+..+.
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~  340 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI  340 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence            4566677789999999999999988777999999998764

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.44  E-value=7.9  Score=32.72  Aligned_cols=146  Identities=8%  Similarity=-0.003  Sum_probs=82.1

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      +++.+..+.-+++.|+.+.+.-..+..-...-..-.|.-.|++..++..|.-+.+.|+....+..     ..........
T Consensus        98 yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~-----lagrya~~~~  172 (370)
T COG5276          98 YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ-----LAGRYALPGG  172 (370)
T ss_pred             EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce-----eeeeeccCCC
Confidence            55555566669999998764322221111111223344568999999877778889987665322     2222333333


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW  380 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i  380 (440)
                      .-..++.|  |++-..+..|+-+.+-|+......    .....     .   .....+..+..+++.-+++....|. .+
T Consensus       173 d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP----vli~~-----~---n~g~g~~sv~vsdnr~y~vvy~egv-li  237 (370)
T COG5276         173 DTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP----VLIGS-----Y---NTGPGTYSVSVSDNRAYLVVYDEGV-LI  237 (370)
T ss_pred             CceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC----eEEEE-----E---ecCCceEEEEecCCeeEEEEcccce-EE
Confidence            33556664  667777788999999999854321    11110     0   0111356677777777777655443 33


Q ss_pred             EEcCCc
Q 013578          381 LSVETG  386 (440)
Q Consensus       381 ~d~~~~  386 (440)
                      -|..+.
T Consensus       238 vd~s~~  243 (370)
T COG5276         238 VDVSGP  243 (370)
T ss_pred             EecCCC
Confidence            444433

>PRK13684 Ycf48-like protein; Provisional

Probab=91.19  E-value=4.8  Score=35.59  Aligned_cols=108  Identities=9%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEE-EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCE
Q 013578          299 KSAVTWLCFAPNSEQIITASKDGTLRV-WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGST  377 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  377 (440)
                      .+.+.++.+.|++.+++++. .|.+.. +|-. +       ......      .......+..+.+.++++.++++..|.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g-------~tW~~~------~~~~~~~l~~i~~~~~g~~~~vg~~G~  236 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-Q-------TAWTPH------QRNSSRRLQSMGFQPDGNLWMLARGGQ  236 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-C-------CeEEEe------eCCCcccceeeeEcCCCCEEEEecCCE
Confidence            45688899999887665554 455442 2211 0       001000      012234577899999999999988887


Q ss_pred             EEEEEcCCccchhhhhcc---ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578          378 LQWLSVETGKVLDTAEKA---HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK  430 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~  430 (440)
                      +++=....|+.-.....+   -...+.++.+.+++        . ++.++.+|.+.
T Consensus       237 ~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~--------~-~~~~G~~G~v~  283 (334)
T PRK13684        237 IRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG--------E-IWAGGGNGTLL  283 (334)
T ss_pred             EEEccCCCCCccccccCCccccccceeeEEEcCCC--------C-EEEEcCCCeEE
Confidence            764334444432222111   22357889999875        4 44555677554

>PHA02790 Kelch-like protein; Provisional

Probab=91.08  E-value=14  Score=34.80  Aligned_cols=100  Identities=9%  Similarity=0.011  Sum_probs=47.1

Q ss_pred             EEEEeeCC---ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578          221 IIASCSEG---TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       221 ~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                      +.+.|+.+   ..+..||..+.+-...-..........+..-+++..+.|   |.+.+||....      .+..+..+..
T Consensus       365 IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~------~W~~~~~m~~  435 (480)
T PHA02790        365 IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSN------TWTLIDDPIY  435 (480)
T ss_pred             EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCC------cEeEcCCCCC
Confidence            55555543   346778877654332111111111112223456666666   35677876432      2323333322


Q ss_pred             cccceEEEEEcCCCCEEEEEeCC-----CcEEEEecCcc
Q 013578          298 HKSAVTWLCFAPNSEQIITASKD-----GTLRVWNINVR  331 (440)
Q Consensus       298 h~~~v~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~  331 (440)
                      .......+.+  +++..+.|+.+     ..|..||..+.
T Consensus       436 ~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        436 PRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence            2222222333  67777777754     34666776643

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=91.08  E-value=21  Score=37.03  Aligned_cols=15  Identities=20%  Similarity=0.169  Sum_probs=11.5

Q ss_pred             cccCCeEEEEecCCC
Q 013578          395 AHEGEITCMAWAPKT  409 (440)
Q Consensus       395 ~h~~~v~~v~~~~~~  409 (440)
                      +|-..+.+++.+||+
T Consensus       659 A~lnsp~alaVsPdg  673 (1899)
T KOG4659|consen  659 AKLNSPYALAVSPDG  673 (1899)
T ss_pred             cccCCcceEEECCCC
Confidence            456678888888887

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.02  E-value=0.045  Score=48.62  Aligned_cols=93  Identities=13%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK  299 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  299 (440)
                      .++.+-..+.+.+||+.+... .++.. ....-.-+.|++.+..++.+...|.+.||+.....        .......|.
T Consensus        89 lavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR--------~iiv~Gkh~  159 (615)
T KOG2247|consen   89 LAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR--------RIIVMGKHQ  159 (615)
T ss_pred             hhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCCccccccccccceEEEeccchh--------hhhhhcccc
Confidence            444555667799999875432 22221 12222336899999999999999999999976554        344444489


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcE
Q 013578          300 SAVTWLCFAPNSEQIITASKDGTL  323 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~dg~i  323 (440)
                      ..++++++.+.+. .+.++.|..+
T Consensus       160 RRgtq~av~lEd~-vil~dcd~~L  182 (615)
T KOG2247|consen  160 RRGTQIAVTLEDY-VILCDCDNTL  182 (615)
T ss_pred             cceeEEEecccce-eeecCcHHHH
Confidence            9999999998665 4455444433

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.68  E-value=12  Score=33.44  Aligned_cols=209  Identities=12%  Similarity=0.118  Sum_probs=0.0

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC--CCCe--EEEEecC----CCEEEEEeEecCCCce
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP--NGRF--LAAAAFT----ADVKVWEIVYSKDGLV  286 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~--l~~~~~d----g~i~i~d~~~~~~~~~  286 (440)
                      .|..+ +++....++-+.+||+. |+.++.+....-.--.+...-  .|+.  |++++..    ..|++|.+........
T Consensus        65 dp~kS-lIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   65 DPAKS-LIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             -GGG--EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             Ccccc-eEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce


Q ss_pred             eeeeeeeeeeccccceEEEEEcCCCC----EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          287 KAVTSVMQLKGHKSAVTWLCFAPNSE----QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       287 ~~~~~~~~~~~h~~~v~~~~~~p~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                      ........+......+..+++..+..    +.+....+|.+.-|.+.....-.-.....+.+....        ++..|.
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--------Q~EGCV  214 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--------QPEGCV  214 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---------EEEEE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--------cceEEE


Q ss_pred             eCCCCCEEEEec-CCEEEEEEcCCccchhhhh------ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          363 LSSDGKILAATH-GSTLQWLSVETGKVLDTAE------KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       363 ~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ......+|..+. +..|.-|+.+...-.....      ......|..|+.-...    ++++.+|+|.-.+++..||+..
T Consensus       215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~----~g~gYLivSsQG~~sf~Vy~r~  290 (381)
T PF02333_consen  215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGS----DGKGYLIVSSQGDNSFAVYDRE  290 (381)
T ss_dssp             EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-C----CC-EEEEEEEGGGTEEEEEESS
T ss_pred             EecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecC----CCCeEEEEEcCCCCeEEEEecC


Q ss_pred             CC
Q 013578          436 SL  437 (440)
Q Consensus       436 ~~  437 (440)
                      ..
T Consensus       291 ~~  292 (381)
T PF02333_consen  291 GP  292 (381)
T ss_dssp             TT
T ss_pred             CC

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=90.31  E-value=16  Score=34.29  Aligned_cols=154  Identities=17%  Similarity=0.140  Sum_probs=68.1

Q ss_pred             CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc-cceEEE
Q 013578          227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK-SAVTWL  305 (440)
Q Consensus       227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~-~~v~~~  305 (440)
                      ......++|.. |.....+.........+..-++|.+++...  ..+..+|+....    .   ....+.+.. ..=..+
T Consensus       126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v----~---~~~~l~~~~~~~HHD~  195 (477)
T PF05935_consen  126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV----I---WEYDLPGGYYDFHHDI  195 (477)
T ss_dssp             BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E----E---EEEE--TTEE-B-S-E
T ss_pred             CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE----E---EeeecCCccccccccc
Confidence            44556677754 655555543332222266778888876655  667777652110    0   112222210 111346


Q ss_pred             EEcCCCCEEEEEe--------------CCC---------cEEEEecCccccccCCCCc---c-ccccccccCCCCCeeee
Q 013578          306 CFAPNSEQIITAS--------------KDG---------TLRVWNINVRYHLDEDPKT---L-KVLPIPLLDSNGATLQY  358 (440)
Q Consensus       306 ~~~p~~~~l~s~~--------------~dg---------~i~iwd~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~v  358 (440)
                      ...|+|++|+.+.              .|.         .|..||+..-  +......   . ................+
T Consensus       196 ~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~--ld~~~~~~~~~~~~~~~~~~~~~~DW~H~  273 (477)
T PF05935_consen  196 DELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDH--LDPYRDTVLKPYPYGDISGSGGGRDWLHI  273 (477)
T ss_dssp             EE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGT--S-TT--TTGGT--SSSSS-SSTTSBS--E
T ss_pred             EECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHh--CCcccccccccccccccccCCCCCCcccc
Confidence            6778888877666              221         1333444321  1000000   0 00011112233445678


Q ss_pred             eeEEeCC-CCCEEEEec-CCEEEEEEcCCccchhhh
Q 013578          359 DRLSLSS-DGKILAATH-GSTLQWLSVETGKVLDTA  392 (440)
Q Consensus       359 ~~~~~s~-~g~~l~~~~-~~~i~i~d~~~~~~~~~~  392 (440)
                      +++.+.+ ++.+++++. -..|...|..+++....+
T Consensus       274 Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  274 NSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             EEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred             CccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence            8999988 666777766 458888898888877665

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.98  E-value=1.2  Score=24.41  Aligned_cols=31  Identities=16%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             cccCcceeEEEEccCCCEEEEee-CC--CcEEEE
Q 013578           88 KGHGDSVTGLCFSSDGKCLATAC-AD--GVIRVH  118 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t~s-~d--g~v~vW  118 (440)
                      ....+.-....|||||++|+-++ .+  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            33455678899999999888665 44  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.70  E-value=9.4  Score=30.75  Aligned_cols=155  Identities=11%  Similarity=0.129  Sum_probs=81.5

Q ss_pred             EEEEeeCCceEEEEeCCC--CceeeeeeCCCCcccEEEecCCCCeEEEEecCC------CEEEEE-eEecC--CCcee--
Q 013578          221 IIASCSEGTDISIWHGKT--GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA------DVKVWE-IVYSK--DGLVK--  287 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------~i~i~d-~~~~~--~~~~~--  287 (440)
                      .|+.+...+.|.+|++.+  .+.+..+..- +.|..+.++..|++|++--.+.      .+|+|- .+...  .....  
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            444446677799999883  3455666553 6788999999999999874432      455542 21111  00000  


Q ss_pred             ---------------eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccC-C
Q 013578          288 ---------------AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLD-S  351 (440)
Q Consensus       288 ---------------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~  351 (440)
                                     ..-.+..+. -..++.+++..|-..-|+.|+. +.+.+|.+........   ..+.+.....- .
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~---~~~~lDFe~~l~~  183 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSE---KFSFLDFERSLID  183 (215)
T ss_pred             EcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecc---cccEEechhhhhh
Confidence                           000111222 2456778888884444555654 5899998875432111   11111110000 0


Q ss_pred             CCCeeeeeeEEeCCCCCEEEEecCCEEEEEEc
Q 013578          352 NGATLQYDRLSLSSDGKILAATHGSTLQWLSV  383 (440)
Q Consensus       352 ~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~  383 (440)
                      .........+++  -+.|+|..++..++++.+
T Consensus       184 ~~~~~~p~~v~i--c~~yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  184 HIDNFKPTQVAI--CEGYIAVMSDLEVLVLKL  213 (215)
T ss_pred             eecCceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence            000111222333  356888888888887754

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.55  E-value=13  Score=33.53  Aligned_cols=85  Identities=13%  Similarity=0.196  Sum_probs=47.5

Q ss_pred             EEEeeCCceEEEEeCCCCce----eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578          222 IASCSEGTDISIWHGKTGKL----LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                      ++.-..+++|.+++....+.    ..+.+.....|..++|+.. .-+|.-...| +.+|-+...+       +.+...+.
T Consensus        81 lAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek-------rslRlVks  151 (657)
T KOG2377|consen   81 LAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK-------RSLRLVKS  151 (657)
T ss_pred             EEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh-------hhhhhhhh
Confidence            34444455566665532221    1222333445677788765 4455555444 6677665433       24555666


Q ss_pred             cccceEEEEEcCCCCEEE
Q 013578          298 HKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       298 h~~~v~~~~~~p~~~~l~  315 (440)
                      |...|.-..|.++-+.+.
T Consensus       152 ~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  152 HNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             cccCccEEEEccccceEe
Confidence            788888888888776543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.10  E-value=3.1  Score=32.59  Aligned_cols=29  Identities=14%  Similarity=0.298  Sum_probs=24.6

Q ss_pred             ceEEEEEcCCC------CEEEEEeCCCcEEEEecC
Q 013578          301 AVTWLCFAPNS------EQIITASKDGTLRVWNIN  329 (440)
Q Consensus       301 ~v~~~~~~p~~------~~l~s~~~dg~i~iwd~~  329 (440)
                      .|.+++|||.|      -+|++.+.++.|.||.-.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            78999999954      368889999999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.84  E-value=11  Score=30.22  Aligned_cols=100  Identities=11%  Similarity=0.008  Sum_probs=51.6

Q ss_pred             EEEEeeCC--ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEE-EecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578          221 IIASCSEG--TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAA-AAFTADVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       221 ~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                      ++.+.+.-  ..|++||+.+++.+.........+..--...-|..+.. .=.+|.-..||.++-+        .+..+. 
T Consensus        58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~--------~lg~~~-  128 (262)
T COG3823          58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE--------ELGRFS-  128 (262)
T ss_pred             EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh--------hhcccc-
Confidence            66665543  35999999999887665433111111111112333332 2356777777765433        222222 


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q 013578          298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR  331 (440)
Q Consensus       298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~  331 (440)
                      ..+.=+.++.  |+..|+.+....+++.-|.++-
T Consensus       129 y~GeGWgLt~--d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         129 YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             cCCcceeeec--CCcceEeeCCceEEEecCHHHh
Confidence            2233345544  5656766665567776666543

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=88.71  E-value=28  Score=34.91  Aligned_cols=204  Identities=13%  Similarity=0.152  Sum_probs=108.1

Q ss_pred             CeEEEEeeCCceEEEEeCCCCceeeeee--------CCCCcccE--EEecCCCCeEEEEecC---CCEEEEEeEecCC--
Q 013578          219 STIIASCSEGTDISIWHGKTGKLLGNVD--------TNQLKNNM--AAISPNGRFLAAAAFT---ADVKVWEIVYSKD--  283 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~--------~~~~~v~~--~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~--  283 (440)
                      +.-++.-...|.+++|=.+.........        .....++.  +++..+|+.+++++.+   +.|++|.+.-.-.  
T Consensus        62 K~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~  141 (753)
T PF11635_consen   62 KSACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAK  141 (753)
T ss_pred             ceEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCc
Confidence            3456777888999998763322222211        12333444  4545677777666665   8899998754322  


Q ss_pred             Cc-e-----e--eeeeeeee--ec-------------cccceEEEEEcC----C---CCEEEEEeC----CCcEEEEecC
Q 013578          284 GL-V-----K--AVTSVMQL--KG-------------HKSAVTWLCFAP----N---SEQIITASK----DGTLRVWNIN  329 (440)
Q Consensus       284 ~~-~-----~--~~~~~~~~--~~-------------h~~~v~~~~~~p----~---~~~l~s~~~----dg~i~iwd~~  329 (440)
                      .. .     .  ....+...  ..             .-..++.+.|-+    .   -..|++.+.    ...|.-|.++
T Consensus       142 ~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~  221 (753)
T PF11635_consen  142 PQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELR  221 (753)
T ss_pred             CccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEE
Confidence            00 0     0  01111111  00             113566777755    1   123444432    3368999987


Q ss_pred             ccccccC-----CC-------CccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhh----
Q 013578          330 VRYHLDE-----DP-------KTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTA----  392 (440)
Q Consensus       330 ~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~----  392 (440)
                      .....-.     ..       .............-.....|.++....-+.+++.. .||.|.++|..+.+.+...    
T Consensus       222 ~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~  301 (753)
T PF11635_consen  222 EEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNG  301 (753)
T ss_pred             ccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccccccc
Confidence            5432100     00       00000111111111222346667776777777765 5999999999888665443    


Q ss_pred             hc--------------cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578          393 EK--------------AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK  430 (440)
Q Consensus       393 ~~--------------~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~  430 (440)
                      ..              .+...+..++|+|.+        ..++.-..||.+.
T Consensus       302 ~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~--------c~~v~~~~~~~~~  345 (753)
T PF11635_consen  302 EPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM--------CSLVQIDEDGKTK  345 (753)
T ss_pred             CCccccccccccccccccCCCCceEEECccc--------ceEEEEecCCCce
Confidence            10              111244568899998        7888888888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=88.54  E-value=6.1  Score=33.06  Aligned_cols=114  Identities=17%  Similarity=0.078  Sum_probs=67.0

Q ss_pred             cceEEEEEcCCCCEEEEEeCCC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCE
Q 013578          300 SAVTWLCFAPNSEQIITASKDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGST  377 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  377 (440)
                      ....++.|..+|.++-+.+.-|  .|+.+|+.+++......     ++...+        --.++...|.-+..+=.++.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~-----l~~~~F--------gEGit~~~d~l~qLTWk~~~  111 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVP-----LPPRYF--------GEGITILGDKLYQLTWKEGT  111 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE------TTT----------EEEEEEETTEEEEEESSSSE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE-----CCcccc--------ceeEEEECCEEEEEEecCCe
Confidence            3456788877888888888766  69999999875432110     000000        01233334433444555899


Q ss_pred             EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ..+||..+.+.+.++.  ..+.=+.++...+          .|+.......++++|..+.+
T Consensus       112 ~f~yd~~tl~~~~~~~--y~~EGWGLt~dg~----------~Li~SDGS~~L~~~dP~~f~  160 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTFP--YPGEGWGLTSDGK----------RLIMSDGSSRLYFLDPETFK  160 (264)
T ss_dssp             EEEEETTTTEEEEEEE---SSS--EEEECSS----------CEEEE-SSSEEEEE-TTT-S
T ss_pred             EEEEccccceEEEEEe--cCCcceEEEcCCC----------EEEEECCccceEEECCcccc
Confidence            9999999998888774  4566677774433          44444446678888876643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.54  E-value=2.9  Score=37.39  Aligned_cols=171  Identities=16%  Similarity=0.120  Sum_probs=87.3

Q ss_pred             ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC-CCCCCc-eEEEccCCCeEEEEeecCCcce
Q 013578           87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP-PGGPPT-AVAFADNATSIVVATHNLSGCS  164 (440)
Q Consensus        87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~-~~~~v~-~v~~~~~~~~l~~~~~~~~~~~  164 (440)
                      +..--..|..+-..|||+.|..-+. ..+.|+++........+......+ ....|+ .+.....|..++++..|+....
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            3344566778889999998776554 578999987655432222211111 001122 2223345556666666643333


Q ss_pred             EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC-CCeEEEEeeCCceEEEEeCCCCceee
Q 013578          165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD-GSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                      +...........                     +..+.. ........+..|+ .+.-+++-...|++.++.....+.+.
T Consensus       295 WFdvr~~~~p~l---------------------~h~R~f-~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL  352 (733)
T COG4590         295 WFDVRRDGQPHL---------------------NHIRNF-KLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL  352 (733)
T ss_pred             eeeeecCCCCcc---------------------eeeecc-ccCcccceeeccccccceEEEEcCCCceeeeecccCccee
Confidence            322221111000                     000000 0000111111222 23356777778888887655444332


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecC
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK  282 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  282 (440)
                      .-.. -....-+++||.+.++++- +.|+|+++.+.+..
T Consensus       353 ~~~~-~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~  389 (733)
T COG4590         353 FERA-YQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRN  389 (733)
T ss_pred             hhhh-hcCcceeeeCcccchheee-cCCceEEEEecCCC
Confidence            2222 2256678999999998875 46789999886554

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=88.28  E-value=20  Score=32.61  Aligned_cols=117  Identities=9%  Similarity=-0.025  Sum_probs=63.6

Q ss_pred             CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578          249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI  328 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~  328 (440)
                      ...+..+.+.+++.+++++ ..|.+.. ....+.......+... ........+.++.|.+++..++ ++.+|.+....-
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~-~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~D  355 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEA-DIKSRGFGILDVGYRSKKEAWA-AGGSGILLRSTD  355 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeec-ccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeCC
Confidence            4457788899998887766 5665543 2222210000011111 1111223588999998777554 456777666532


Q ss_pred             CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEE
Q 013578          329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWL  381 (440)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~  381 (440)
                      . ++.       .....    ....-...++.+.|.++++.+++|.+|.|.-|
T Consensus       356 ~-G~t-------W~~~~----~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        356 G-GKS-------WKRDK----GADNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             C-Ccc-------eeEcc----ccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            2 211       00000    00111234668999999999999999987655

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.25  E-value=21  Score=32.95  Aligned_cols=32  Identities=16%  Similarity=0.157  Sum_probs=24.8

Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q 013578          299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINV  330 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~  330 (440)
                      -...+.|+|.|+|++|++--..|.|++++-.+
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~   60 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPET   60 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence            34568999999998777665569999997654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.91  E-value=2.4  Score=40.63  Aligned_cols=76  Identities=20%  Similarity=0.240  Sum_probs=43.1

Q ss_pred             CCCCeEEEEecCCCEEEEEeEecC-CCceeeeee---------eeee--------eccccceEEEEEcC----CCCEEEE
Q 013578          259 PNGRFLAAAAFTADVKVWEIVYSK-DGLVKAVTS---------VMQL--------KGHKSAVTWLCFAP----NSEQIIT  316 (440)
Q Consensus       259 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~---------~~~~--------~~h~~~v~~~~~~p----~~~~l~s  316 (440)
                      ++...++++..||.+......... .+.......         +..+        ....+.+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            467788888899998888765411 111000000         0000        01123455666666    6789999


Q ss_pred             EeCCCcEEEEecCccccc
Q 013578          317 ASKDGTLRVWNINVRYHL  334 (440)
Q Consensus       317 ~~~dg~i~iwd~~~~~~~  334 (440)
                      .+.|+++|+||+.++.++
T Consensus       236 l~~D~~LRiW~l~t~~~~  253 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCL  253 (547)
T ss_dssp             EETTSEEEEEETTTTCEE
T ss_pred             EeCCCeEEEEECCCCeEE
Confidence            999999999999998873

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.84  E-value=1.6  Score=24.31  Aligned_cols=29  Identities=31%  Similarity=0.404  Sum_probs=22.1

Q ss_pred             CCCCEEEEec--CCEEEEEEcCCccchhhhh
Q 013578          365 SDGKILAATH--GSTLQWLSVETGKVLDTAE  393 (440)
Q Consensus       365 ~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~  393 (440)
                      |+++.|.++.  ++.|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            5677666644  7899999999888877764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.23  E-value=20  Score=31.65  Aligned_cols=61  Identities=13%  Similarity=0.122  Sum_probs=35.3

Q ss_pred             CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEE
Q 013578          260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLR  324 (440)
Q Consensus       260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~  324 (440)
                      +|.+|+..-..+.|....+....  ..  ......+......+..+++.|||.++++...+|.|.
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~--~~--~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDG--SV--TEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTE--EE--EEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cCcEEEecCCCCEEEEEeeecCC--Cc--cceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            34455555445566666654221  11  111222334455899999999999888888888874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.99  E-value=3.1  Score=22.72  Aligned_cols=28  Identities=14%  Similarity=0.366  Sum_probs=18.8

Q ss_pred             CCcccEEEecCCCCeEEEEec-C--CCEEEE
Q 013578          249 QLKNNMAAISPNGRFLAAAAF-T--ADVKVW  276 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~-d--g~i~i~  276 (440)
                      ........|+|||+.|+..+. +  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            445667899999998887764 3  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.79  E-value=43  Score=34.93  Aligned_cols=155  Identities=10%  Similarity=0.183  Sum_probs=87.7

Q ss_pred             CCceEEEEeCCCCceeeeeeCCCCcccEEEe--------cCCCCeEEEEecCCCEEEEEeEecCCCcee-eeeeeeeeec
Q 013578          227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAI--------SPNGRFLAAAAFTADVKVWEIVYSKDGLVK-AVTSVMQLKG  297 (440)
Q Consensus       227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~--------s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~  297 (440)
                      .|+.+.+|+.+++.....+.+....|..+..        -|.=+++++-..--.|.++-+......... .......+..
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            4677999999997777777666555555432        223345555555667888776544321111 1111122333


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEecC----ccc----cccCCC--Cc-cccccccccCC-CCCeeeeeeEEeCC
Q 013578          298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNIN----VRY----HLDEDP--KT-LKVLPIPLLDS-NGATLQYDRLSLSS  365 (440)
Q Consensus       298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~----~~~----~~~~~~--~~-~~~~~~~~~~~-~~~~~~v~~~~~s~  365 (440)
                      ....|+|+....+|+.|++| .||  .+|.+.    .+.    +.....  .. ....+. +... ..+..+|..++...
T Consensus       177 dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             CCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEecc
Confidence            35568899988888866655 566  445432    111    000000  00 001111 2222 25566789999998


Q ss_pred             CCCEEEE-ecCCEEEEEEcCC
Q 013578          366 DGKILAA-THGSTLQWLSVET  385 (440)
Q Consensus       366 ~g~~l~~-~~~~~i~i~d~~~  385 (440)
                      ...++.+ +..+.|.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            8888777 4579999999976

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=86.75  E-value=10  Score=37.09  Aligned_cols=39  Identities=26%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCC
Q 013578           81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDA  123 (440)
Q Consensus        81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~  123 (440)
                      |..+..|.||  .|.+++.+.+..+++|  .+|.|.-|-++..
T Consensus       220 PkrV~gL~gh--~~~qisvs~~HslvLT--~~g~Vys~GlN~~  258 (1267)
T KOG0783|consen  220 PKRVPGLIGH--KVIQISVSHTHSLVLT--KFGSVYSWGLNGS  258 (1267)
T ss_pred             cccccccccc--ceEEEEeecceeEEEe--ecceEEEeecCcc
Confidence            4446667777  5889999888777766  6888999987654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=86.44  E-value=5.6  Score=36.34  Aligned_cols=61  Identities=18%  Similarity=0.356  Sum_probs=46.1

Q ss_pred             CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578          260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                      ...++|+|+..|.|++||--...        ....+.+....|..+..+.+|.++++.|. ..+.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig~r--------AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKR--------AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcch--------hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            45689999999999999942211        23345667788999999999998877775 477777775

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.40  E-value=23  Score=31.31  Aligned_cols=66  Identities=17%  Similarity=0.193  Sum_probs=38.0

Q ss_pred             CCcccEEEecCCCCeEEEEecC-----C---------CEEEEEeEecCCCceeeeeeeeeeec-----cccceEEEEEcC
Q 013578          249 QLKNNMAAISPNGRFLAAAAFT-----A---------DVKVWEIVYSKDGLVKAVTSVMQLKG-----HKSAVTWLCFAP  309 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~d-----g---------~i~i~d~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~p  309 (440)
                      +...-.++++|+|+.|+++.+.     +         .++++.......+.. .......+..     ....|..+.+-+
T Consensus       146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~-~~~~~y~ld~~~~~~~~~~isd~~al~  224 (326)
T PF13449_consen  146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP-VAEYAYPLDPPPTAPGDNGISDIAALP  224 (326)
T ss_pred             CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc-ceEEEEeCCccccccCCCCceeEEEEC
Confidence            3446689999999977776532     2         156665543321111 1112223322     356788899999


Q ss_pred             CCCEEE
Q 013578          310 NSEQII  315 (440)
Q Consensus       310 ~~~~l~  315 (440)
                      ++++|+
T Consensus       225 d~~lLv  230 (326)
T PF13449_consen  225 DGRLLV  230 (326)
T ss_pred             CCcEEE
Confidence            888665

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=86.21  E-value=8.1  Score=36.53  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=48.7

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCC-cEEEEecCCCCCcceeeEEecCCC-----CCCCceEEEccCCCeEEEE
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADG-VIRVHKLDDASSKSFKFLRINLPP-----GGPPTAVAFADNATSIVVA  156 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg-~v~vW~~~~~~~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~l~~~  156 (440)
                      .+..|+.|..+|..++|.+.|..+++++-.| .|.++.+...-............+     ...+..++|+...+.+..+
T Consensus       307 ~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~r~~g  386 (788)
T KOG2109|consen  307 DIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTIRTAG  386 (788)
T ss_pred             hhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcceEeec
Confidence            3567899999999999999999999998665 355555432211111111111111     1234567788777777777


Q ss_pred             eecCC
Q 013578          157 THNLS  161 (440)
Q Consensus       157 ~~~~~  161 (440)
                      +.++.
T Consensus       387 sc~Ge  391 (788)
T KOG2109|consen  387 SCEGE  391 (788)
T ss_pred             ccCCC
Confidence            65543

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=85.70  E-value=22  Score=32.75  Aligned_cols=32  Identities=22%  Similarity=0.339  Sum_probs=24.7

Q ss_pred             cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          397 EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       397 ~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +..|.++...+..        +.|++...+|.|.+|++..
T Consensus       189 ~~~I~~v~~d~~r--------~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  189 RPKIVQVAVDPSR--------RLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             ---EEEEEEETTT--------TEEEEEESSE-EEEEEE-S
T ss_pred             hhceeeEEecCCc--------CEEEEEeCCCcEEEEEEeC
Confidence            3459999998886        7999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.30  E-value=30  Score=32.11  Aligned_cols=79  Identities=11%  Similarity=0.214  Sum_probs=43.7

Q ss_pred             ccEEEecCCCCeEEEEecCCCEEEEEe-EecCCCceeee----ee-----eeee--eccccceEEEEEcCCC---CEEEE
Q 013578          252 NNMAAISPNGRFLAAAAFTADVKVWEI-VYSKDGLVKAV----TS-----VMQL--KGHKSAVTWLCFAPNS---EQIIT  316 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~----~~-----~~~~--~~h~~~v~~~~~~p~~---~~l~s  316 (440)
                      |..+..++.|..++..+.+|.+.++=. +.+.++.....    .+     -..+  ....-.+...+|+|+.   ..|..
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i  185 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL  185 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence            455777899999999988886655431 12221111100    00     0001  1111235567788865   45666


Q ss_pred             EeCCCcEEEEecCc
Q 013578          317 ASKDGTLRVWNINV  330 (440)
Q Consensus       317 ~~~dg~i~iwd~~~  330 (440)
                      -+.|..||+||+..
T Consensus       186 L~sdnviRiy~lS~  199 (741)
T KOG4460|consen  186 LTSDNVIRIYSLSE  199 (741)
T ss_pred             EecCcEEEEEecCC
Confidence            66777888888763

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=85.19  E-value=37  Score=32.65  Aligned_cols=61  Identities=15%  Similarity=0.135  Sum_probs=43.4

Q ss_pred             ceeEEEEccCCCEEEEe-----eCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           93 SVTGLCFSSDGKCLATA-----CADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~-----s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      .+-.++.|||++++|-+     +..-++++-|+.++....       ..-.+....++|.+|++.+.....+.
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~-------d~i~~~~~~~~Wa~d~~~lfYt~~d~  195 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELP-------DEITNTSGSFAWAADGKTLFYTRLDE  195 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccc-------hhhcccccceEEecCCCeEEEEEEcC
Confidence            56678899999998854     444578999998875321       11123467889999999888877663

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=84.51  E-value=25  Score=30.17  Aligned_cols=220  Identities=12%  Similarity=0.139  Sum_probs=110.4

Q ss_pred             cccccCCCCCeEEEEeeCCceEEEEeCC------CC-ceeeeeeC-----CCCcccEEEecCCCC------------eEE
Q 013578          210 SATYGTADGSTIIASCSEGTDISIWHGK------TG-KLLGNVDT-----NQLKNNMAAISPNGR------------FLA  265 (440)
Q Consensus       210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~s~~~~------------~l~  265 (440)
                      ..+.++|.+. +.++....+...+||..      .. ..+-.+..     .....+.+.|+....            .++
T Consensus        26 WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        26 WGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             ceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            3445567665 66777777889999986      12 22333331     123456677764322            367


Q ss_pred             EEecCCCEEEEEeEecCCCceeeeeeeeeee-ccccce-EEEEEcC--CCCEEEEEe-CCCcEEEEecCccccccCCCCc
Q 013578          266 AAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-GHKSAV-TWLCFAP--NSEQIITAS-KDGTLRVWNINVRYHLDEDPKT  340 (440)
Q Consensus       266 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~h~~~v-~~~~~~p--~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~  340 (440)
                      .+++||+|.-|...........   ....+. ...+.| ..+++..  .+.+|+.+. ..++|.++|-.-.....  +..
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~---~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--~g~  179 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTR---AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--PGS  179 (336)
T ss_pred             EEeCCceEEeecCcCCcccccc---cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC--CCC
Confidence            7889999999985433210000   111121 112333 3566554  355665544 68899999865332110  000


Q ss_pred             ccccccccc------CCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhh-ccccCCeEEEEecCCCCCC
Q 013578          341 LKVLPIPLL------DSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAE-KAHEGEITCMAWAPKTIPM  412 (440)
Q Consensus       341 ~~~~~~~~~------~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~  412 (440)
                      ...-.++..      ..-+...-|+-..-.++++.=+.| .-|.|.+||.. |+.++++. .+.-...+.|+..|..  .
T Consensus       180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~--F  256 (336)
T TIGR03118       180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES--F  256 (336)
T ss_pred             ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh--h
Confidence            000000000      000111111111222222211112 23688888874 55555542 2334466778876643  1


Q ss_pred             CCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          413 GNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       413 ~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +.-.+.+|+----||+|..||..+++
T Consensus       257 G~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       257 GSLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             CCCCCCeEEeecCCceeEEecCCCCc
Confidence            11122577766669999999988765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=84.27  E-value=26  Score=30.20  Aligned_cols=187  Identities=10%  Similarity=0.063  Sum_probs=0.0

Q ss_pred             eEEEEeCCCCceeeeee------CCCCcccEEEecCCCC----eEEEEecCC--CEEEEEeEecC-----------CCce
Q 013578          230 DISIWHGKTGKLLGNVD------TNQLKNNMAAISPNGR----FLAAAAFTA--DVKVWEIVYSK-----------DGLV  286 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~----~l~~~~~dg--~i~i~d~~~~~-----------~~~~  286 (440)
                      .|.+||+.+++.++.+.      ...+....+.+.....    .+|.-+..+  -|.+||+..++           +...
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc


Q ss_pred             eeeeeeeeeeccccceEEEEEcC---CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          287 KAVTSVMQLKGHKSAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       287 ~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                      .....-...-.....+.+++.+|   ++++|+-.... .-++|.+.+..............................+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCC-CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE


Q ss_pred             CCCCCEEEEec-CCEEEEEEcCC----ccchhhhhccc-cCCeEEEEecC--CCCCCCCCcceEEEEeeC
Q 013578          364 SSDGKILAATH-GSTLQWLSVET----GKVLDTAEKAH-EGEITCMAWAP--KTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       364 s~~g~~l~~~~-~~~i~i~d~~~----~~~~~~~~~~h-~~~v~~v~~~~--~~~~~~~~~~~~l~t~~~  425 (440)
                      +++|.++.+-- .+.|..|+..+    ........... -.-+.++.+.+  ++        .+.+.+..
T Consensus       194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g--------~L~v~snr  255 (287)
T PF03022_consen  194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDG--------YLWVLSNR  255 (287)
T ss_dssp             ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS---------EEEEE-S
T ss_pred             CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCc--------eEEEEECc

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=83.55  E-value=26  Score=29.55  Aligned_cols=142  Identities=13%  Similarity=0.108  Sum_probs=85.7

Q ss_pred             cCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578          214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      -.+||. .-+++...+.|--.|..+|+....--+.......+...|||..-++=+.. -|.-.|-++..   +..+... 
T Consensus        69 papdG~-VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e---vt~f~lp-  142 (353)
T COG4257          69 PAPDGA-VWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE---VTRFPLP-  142 (353)
T ss_pred             cCCCCc-eEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc---eEEeecc-
Confidence            356776 67777777888888888888765544445566778888988765553332 33333332211   1222111 


Q ss_pred             eeeccccceEEEEEcCCCCEEEEEeC---------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578          294 QLKGHKSAVTWLCFAPNSEQIITASK---------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS  364 (440)
Q Consensus       294 ~~~~h~~~v~~~~~~p~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  364 (440)
                       .+.-........|.+.|.+-+++..         .+.|++|+...+                        ..-+.++..
T Consensus       143 -~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG------------------------~gpyGi~at  197 (353)
T COG4257         143 -LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG------------------------GGPYGICAT  197 (353)
T ss_pred             -cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC------------------------CCCcceEEC
Confidence             2223456778889999998777752         234555554321                        112358889


Q ss_pred             CCCCEEEEe-cCCEEEEEEcCCc
Q 013578          365 SDGKILAAT-HGSTLQWLSVETG  386 (440)
Q Consensus       365 ~~g~~l~~~-~~~~i~i~d~~~~  386 (440)
                      |||..-.+. .++.|-..|..++
T Consensus       198 pdGsvwyaslagnaiaridp~~~  220 (353)
T COG4257         198 PDGSVWYASLAGNAIARIDPFAG  220 (353)
T ss_pred             CCCcEEEEeccccceEEcccccC
Confidence            999966654 3667777777666

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=83.18  E-value=26  Score=29.25  Aligned_cols=142  Identities=9%  Similarity=0.096  Sum_probs=68.2

Q ss_pred             EEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeeccc
Q 013578          116 RVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH  195 (440)
Q Consensus       116 ~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (440)
                      .+||+.+.+...     .....+--+.+-.+.+||+.+.+++.......++++......             ....|...
T Consensus        49 ~~yD~~tn~~rp-----l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~-------------~~~~w~e~  110 (243)
T PF07250_consen   49 VEYDPNTNTFRP-----LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSD-------------GTCDWTES  110 (243)
T ss_pred             EEEecCCCcEEe-----ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCC-------------CCCCceEC
Confidence            467777654321     122222334445678999999988876555556555533200             00111110


Q ss_pred             ccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-c-eee--eee-----CCCCcccEEEecCCCCeEEE
Q 013578          196 KVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-K-LLG--NVD-----TNQLKNNMAAISPNGRFLAA  266 (440)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~-~~~--~~~-----~~~~~v~~~~~s~~~~~l~~  266 (440)
                      ...    +...........-+||+.+++.|....+..+|..... . ...  .+.     ....--..+...|+|++|+.
T Consensus       111 ~~~----m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~  186 (243)
T PF07250_consen  111 PND----MQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIF  186 (243)
T ss_pred             ccc----ccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEE
Confidence            000    1111112222336789844444444444555654221 1 111  111     01111235677899999998


Q ss_pred             EecCCCEEEEEeEec
Q 013578          267 AAFTADVKVWEIVYS  281 (440)
Q Consensus       267 ~~~dg~i~i~d~~~~  281 (440)
                      +..+.  .|||....
T Consensus       187 an~~s--~i~d~~~n  199 (243)
T PF07250_consen  187 ANRGS--IIYDYKTN  199 (243)
T ss_pred             EcCCc--EEEeCCCC
Confidence            87654  45676443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=83.14  E-value=47  Score=32.25  Aligned_cols=33  Identities=33%  Similarity=0.591  Sum_probs=29.4

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCC
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDA  123 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~  123 (440)
                      .+.|-.+.|.++++.++..-.+|.|.+||.+.+
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~  161 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSEN  161 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEecccc
Confidence            578999999999999999999999999999433

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=82.10  E-value=23  Score=32.10  Aligned_cols=158  Identities=13%  Similarity=0.123  Sum_probs=86.2

Q ss_pred             ccccCCCCCeEEEEeeCCceEEEEeCCCCcee-eee-eCCCC----ccc-EEEecCCCCeEEEEecCCCEEEE-EeEecC
Q 013578          211 ATYGTADGSTIIASCSEGTDISIWHGKTGKLL-GNV-DTNQL----KNN-MAAISPNGRFLAAAAFTADVKVW-EIVYSK  282 (440)
Q Consensus       211 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-~~~-~~~~~----~v~-~~~~s~~~~~l~~~~~dg~i~i~-d~~~~~  282 (440)
                      .....|||+.+.+-.+  .++.++++.+.... +++ ....+    .|+ .+..-..|..+.+++.||-|.-| |++...
T Consensus       225 qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~  302 (733)
T COG4590         225 QLLLTPDGKTLYVRTG--SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDG  302 (733)
T ss_pred             hhEECCCCCEEEEecC--CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCC
Confidence            3445788884433333  55888877654321 121 11111    122 12223456778889999998776 554333


Q ss_pred             CCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          283 DGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       283 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                      .   .....+..++-...++.-+.-..+.+-+++-+..|++.++.......+-.         .+..      ....-++
T Consensus       303 ~---p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~---------~~~~------~~~~~~~  364 (733)
T COG4590         303 Q---PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF---------ERAY------QAPQLVA  364 (733)
T ss_pred             C---CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh---------hhhh------cCcceee
Confidence            2   11222223332223444333333445577888888888776543221100         0011      1234589


Q ss_pred             eCCCCCEEEEecCCEEEEEEcCCccc
Q 013578          363 LSSDGKILAATHGSTLQWLSVETGKV  388 (440)
Q Consensus       363 ~s~~g~~l~~~~~~~i~i~d~~~~~~  388 (440)
                      +||++.++++-+.|.++++.+++..+
T Consensus       365 ~Sp~~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         365 MSPNQAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             eCcccchheeecCCceEEEEecCCCC
Confidence            99999999999999999998876543

>PRK13613 lipoprotein LpqB; Provisional

Probab=82.01  E-value=52  Score=31.92  Aligned_cols=79  Identities=14%  Similarity=0.169  Sum_probs=50.8

Q ss_pred             CcccEEEecCCCCeEEEEec---CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEE
Q 013578          250 LKNNMAAISPNGRFLAAAAF---TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRV  325 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~i  325 (440)
                      ..|..+.+|+||-.++.-..   .++|++--+....++. ........+......+.+++|..++.+++.+. .++...+
T Consensus       455 ~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v  533 (599)
T PRK13613        455 HRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREEGGVQQA  533 (599)
T ss_pred             CEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCCEEEEEeccCCCCcce
Confidence            36999999999988877654   3677777776655554 33333333333334599999999888766553 3334445


Q ss_pred             EecC
Q 013578          326 WNIN  329 (440)
Q Consensus       326 wd~~  329 (440)
                      |-+.
T Consensus       534 ~~v~  537 (599)
T PRK13613        534 RYVQ  537 (599)
T ss_pred             EEEe
Confidence            5443

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=81.60  E-value=24  Score=34.70  Aligned_cols=88  Identities=18%  Similarity=0.188  Sum_probs=54.1

Q ss_pred             EeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE
Q 013578          234 WHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ  313 (440)
Q Consensus       234 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  313 (440)
                      ||.+   +...+.....++...++..|   ++.|+.+|.|.++...+..    ..+ .......|...|+++.+..++-+
T Consensus       614 wd~e---p~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~----~~~-~leahqee~~~Vthm~~~~~gVw  682 (925)
T KOG3522|consen  614 WDGE---PNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFI----RSW-DLEAHQEEAHSVTHMLYLDNGVW  682 (925)
T ss_pred             CCCC---CccccccCCccccchhhhhc---eeeeecCCceEEEechhcc----ccc-hhHHHHhhcceEEEEEeeCCceE
Confidence            6654   22333344566777777655   5677889999999875443    111 11222335567999999877777


Q ss_pred             EEEEeCCCcEEEEecCcccc
Q 013578          314 IITASKDGTLRVWNINVRYH  333 (440)
Q Consensus       314 l~s~~~dg~i~iwd~~~~~~  333 (440)
                      ++..+.| .+++++.++-..
T Consensus       683 vafasG~-~~rlfhtetl~h  701 (925)
T KOG3522|consen  683 VAFASGD-EERLFHTETLWH  701 (925)
T ss_pred             EEEcCCC-EEEEecccccCC
Confidence            7666655 566666665443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=81.44  E-value=5.8  Score=38.03  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             eEEEEeeCCCeEEEEeCCCCCC
Q 013578          418 SVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       418 ~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      .+|++.+.|+++|+|++.++++
T Consensus       231 ~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  231 TFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             TEEEEEETTSEEEEEETTTTCE
T ss_pred             CEEEEEeCCCeEEEEECCCCeE
Confidence            6999999999999999999875

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=80.04  E-value=21  Score=26.29  Aligned_cols=54  Identities=6%  Similarity=0.051  Sum_probs=31.5

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC----CCCeEEEEecCCCEEEEE
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP----NGRFLAAAAFTADVKVWE  277 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~i~d  277 (440)
                      .|+.|+... +..||......+.....+ ..+.++.+-.    ...++++|+ +..|.-||
T Consensus        66 ~LliGt~t~-llaYDV~~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd  123 (136)
T PF14781_consen   66 CLLIGTQTS-LLAYDVENNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFD  123 (136)
T ss_pred             EEEEeccce-EEEEEcccCchhhhhhCc-cceeEEEEEecCCCCCcEEEECc-eEEEEEeC
Confidence            677777665 999999877665443333 4567766532    233444443 44454444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	440
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-14
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-05
2h9l_A	329	Wdr5delta23 Length = 329		7e-07
2h9l_A	329	Wdr5delta23 Length = 329		5e-06
2h9l_A	329	Wdr5delta23 Length = 329		5e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		8e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-06
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		6e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 162/367 (44%), Gaps = 63/367 (17%)
Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK-----LDDASSKSFKFLRINLPPG 138
           + TL GH  SV G+ FS DG+ +A+A  D  +++       L   +  S     +   P 
Sbjct: 91  LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 150
Query: 139 GPPTAVAFADNATSIVVAT----HNLSGCSLYMYG-----EEKAISTNEGKQQSKLPGPE 189
           G   A A  D    +          L+G S  ++G     + + I++    +  KL    
Sbjct: 151 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL---- 206
Query: 190 IKWEHHKVHDKRAILTLFG-ASATYGTA---DGSTIIASCSEGTDISIWHGKTGKLLGNV 245
             W      + + + TL G +S+  G A   DG T IAS S+   + +W+ + G+LL  +
Sbjct: 207 --WN----RNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWN-RNGQLLQTL 258
Query: 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305
             +    N  A  P+G+ +A+A+    VK+W     ++G +     +  L GH S+V  +
Sbjct: 259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWN----RNGQL-----LQTLTGHSSSVWGV 309
Query: 306 CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365
            F+P+ + I +AS D T+++WN N ++        L+ L        G +     ++ S 
Sbjct: 310 AFSPDGQTIASASDDKTVKLWNRNGQH--------LQTLT-------GHSSSVWGVAFSP 354
Query: 366 DGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV 425
           DG+ +A+        L    G++L T    H   +  +A++P            +A++S 
Sbjct: 355 DGQTIASASDDKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDG--------QTIASASD 405
Query: 426 DKKVKLW 432
           DK VKLW
Sbjct: 406 DKTVKLW 412

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 36/267 (13%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
           TL GH  +V+ + FS +G+ LA++ AD +I++    D      KF +         + VA
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVA 75
Query: 146 FADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
           ++ ++  +V A+ + +          C   + G    +       QS L       E  +
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 197 VHDKRAILTLFG-------ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTN 248
           + D +  + L          SA +   DGS I++S  +G    IW   +G+ L   +D +
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDD 194
Query: 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
               +    SPNG+++ AA    D+K+W+  YSK   +K  T      GHK+   +  FA
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNDLKLWD--YSKGKCLKTYT------GHKNE-KYCIFA 245
Query: 309 PNS----EQIITASKDGTLRVWNINVR 331
             S    + I++ S+D  + +WN+  +
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTK 272

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 28/215 (13%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 138
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 139 -------VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 184
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  + L+      GK L T    H+
Sbjct: 185 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYT-GHK 237
Query: 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            E  C+ +A  ++  G   VS     S D  V +W
Sbjct: 238 NEKYCI-FANFSVTGGKWIVS----GSEDNMVYIW 267

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 24/142 (16%)
Query: 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS 351
           +  L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       
Sbjct: 19  MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI------- 64
Query: 352 NGATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTI 410
           +G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P   
Sbjct: 65  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP--- 120
Query: 411 PMGNQQVSVLATSSVDKKVKLW 432
                Q +++ + S D+ V++W
Sbjct: 121 -----QSNLIVSGSFDESVRIW 137

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 152/369 (41%), Gaps = 65/369 (17%)
Query: 80  HPLDV---NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP 136
           +P D+    TL+GH   V  L ++ +   + +A  DG  R+   +  +S+    ++++ P
Sbjct: 52  NPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDG--RLIVWNALTSQKTHAIKLHCP 109
Query: 137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
                   AFA N  S+     + S CS++         +++  +   +P   +   H  
Sbjct: 110 W---VMECAFAPNGQSVACGGLD-SACSIFNL-------SSQADRDGNMPVSRVLTGHKG 158
Query: 197 VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIW-----HGKTGKLLGNVDTNQLK 251
                  +         G+ D + ++   + G  ISI+      G T  +L ++  N L 
Sbjct: 159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL-SLSINSLN 217
Query: 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS 311
            NM        F++ +  T  V++W++  +         +V    GH+  +  + F P+ 
Sbjct: 218 ANM--------FISGSCDTT-VRLWDLRITS-------RAVRTYHGHEGDINSVKFFPDG 261
Query: 312 EQIITASKDGTLRVWNINVRYHLD----EDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG 367
           ++  T S DGT R++++   + L     E  +    LPI              ++ S  G
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI-----------VTSVAFSISG 310
Query: 368 KILAA--THGSTLQWLSVETGKVLD--TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATS 423
           ++L A  ++G    W ++    VL+  T + +HEG I+C+  +           S L T 
Sbjct: 311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG--------SALCTG 362
Query: 424 SVDKKVKLW 432
           S DK +K+W
Sbjct: 363 SWDKNLKIW 371

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 42/229 (18%)
Query: 220 TIIASCSEGTDISIWHGKTGK----LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKV 275
           +++ S SE   I +W  +TG     L G+ D+ Q      +   +G+ LA+ +    +K+
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ----DISFDHSGKLLASCSADMTIKL 176
Query: 276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLD 335
           W+         +    +  + GH   V+ +   PN + I++AS+D T+++W +   Y + 
Sbjct: 177 WDF--------QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV- 227
Query: 336 EDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKA 395
              KT            G       +  + DG ++A+        + V   K      + 
Sbjct: 228 ---KTF----------TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 396 HEGEITCMAWAPKTIPMGNQQVS------------VLATSSVDKKVKLW 432
           H   + C++WAP++      + +             L + S DK +K+W
Sbjct: 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 117/267 (43%), Gaps = 36/267 (13%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
           TL GH  +V+ + FS +G+ LA++ AD +I++    D      KF +         + VA
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVA 75
Query: 146 FADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
           ++ ++  +V A+ + +          C   + G    +       QS L       E  +
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 197 VHDKRAILTLFG-------ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTN 248
           + D +  + L          SA +   DGS I++S  +G    IW   +G+ L   +D +
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDD 194
Query: 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
               +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  FA
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIFA 245
Query: 309 PNS----EQIITASKDGTLRVWNINVR 331
             S    + I++ S+D  + +WN+  +
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTK 272

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 28/215 (13%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 138
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 139 -------VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 184
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 185 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 237
Query: 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            E  C+ +A  ++  G   VS     S D  V +W
Sbjct: 238 NEKYCI-FANFSVTGGKWIVS----GSEDNMVYIW 267

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 24/142 (16%)
Query: 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS 351
           +  L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       
Sbjct: 19  MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI------- 64
Query: 352 NGATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTI 410
           +G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P   
Sbjct: 65  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP--- 120
Query: 411 PMGNQQVSVLATSSVDKKVKLW 432
                Q +++ + S D+ V++W
Sbjct: 121 -----QSNLIVSGSFDESVRIW 137

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 127/351 (36%), Gaps = 62/351 (17%)
Query: 87  LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF 146
           +K H D V    FSSD   +AT  AD  +++       S + K +              F
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKI-----WDSATGKLVHTYDEHSEQVNCCHF 714
Query: 147 ADNATSIVVATH-----------NLSGCSLYMYGEEKAISTNEGKQQSKL------PGPE 189
            + +  +++AT            N   C   M+G   +++        +L       G  
Sbjct: 715 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 774
Query: 190 IKWEHHKVHDKRAI-LTLFGASATYGTADGSTIIASCSEGTD-----------ISIWHGK 237
             W+    +++++I +  F  S+     D   I+  CS   D           + ++   
Sbjct: 775 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 834
Query: 238 TGKLLGNVDTNQLKN-NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296
           T  LL  + T           SP       A     V++W I    D  +K    V   +
Sbjct: 835 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI----DSRLK----VADCR 886
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356
           GH S V  + F+P+    +TAS D T+RVW         E  K  K   I L        
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW---------ETKKVCKNSAIVLKQEIDVVF 937
Query: 357 QYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407
           Q       ++  +LA  +   LQ ++ +TG++    +   E +++C   +P
Sbjct: 938 Q------ENETMVLAVDNIRGLQLIAGKTGQI----DYLPEAQVSCCCLSP 978

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 363 LSSDGKILAATHGS-TLQWLSVETG-KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
            S DG+ +A+     TLQ    ETG K+LD   KAHE E+ C A++           S +
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAFSSDD--------SYI 679
Query: 421 ATSSVDKKVKLW 432
           AT S DKKVK+W
Sbjct: 680 ATCSADKKVKIW 691

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 127/351 (36%), Gaps = 62/351 (17%)
Query: 87  LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF 146
           +K H D V    FSSD   +AT  AD  +++       S + K +              F
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKI-----WDSATGKLVHTYDEHSEQVNCCHF 707
Query: 147 ADNATSIVVATH-----------NLSGCSLYMYGEEKAISTNEGKQQSKL------PGPE 189
            + +  +++AT            N   C   M+G   +++        +L       G  
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Query: 190 IKWEHHKVHDKRAI-LTLFGASATYGTADGSTIIASCSEGTD-----------ISIWHGK 237
             W+    +++++I +  F  S+     D   I+  CS   D           + ++   
Sbjct: 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827
Query: 238 TGKLLGNVDTNQLKN-NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296
           T  LL  + T           SP       A     V++W I    D  +K    V   +
Sbjct: 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI----DSRLK----VADCR 879
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356
           GH S V  + F+P+    +TAS D T+RVW         E  K  K   I L        
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW---------ETKKVCKNSAIVLKQEIDVVF 930
Query: 357 QYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407
           Q       ++  +LA  +   LQ ++ +TG++    +   E +++C   +P
Sbjct: 931 Q------ENETMVLAVDNIRGLQLIAGKTGQI----DYLPEAQVSCCCLSP 971

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 363 LSSDGKILAATHGS-TLQWLSVETG-KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
            S DG+ +A+     TLQ    ETG K+LD   KAHE E+ C A++           S +
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAFSSDD--------SYI 672
Query: 421 ATSSVDKKVKLW 432
           AT S DKKVK+W
Sbjct: 673 ATCSADKKVKIW 684

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
           TL GH  +V+ + FS +G+ LA++ AD +I++    D    K+    ++ +      + V
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 93
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
           A++ ++  +V A+ + +          C   + G    +       QS L       E  
Sbjct: 94  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
           ++ D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D 
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 212
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
           +    +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  F
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 263
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
           A  S    + I++ S+D  + +WN+  +
Sbjct: 264 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 291

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 99  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 157
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 158 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 203
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 204 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 256
Query: 398 GEITCM 403
            E  C+
Sbjct: 257 NEKYCI 262

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 39  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 84
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 85  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 139
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 140 ----QSNLIVSGSFDESVRIW 156

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
           TL GH  +V+ + FS +G+ LA++ AD +I++    D    K+    ++ +      + V
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 77
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
           A++ ++  +V A+ + +          C   + G    +       QS L       E  
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
           ++ D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D 
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 196
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
           +    +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  F
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 247
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
           A  S    + I++ S+D  + +WN+  +
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 275

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 141
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 142 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 187
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 188 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 240
Query: 398 GEITCM 403
            E  C+
Sbjct: 241 NEKYCI 246

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 68
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 69  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 123
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 124 ----QSNLIVSGSFDESVRIW 140

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
           TL GH  +V+ + FS +G+ LA++ AD +I++    D    K+    ++ +      + V
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 95
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
           A++ ++  +V A+ + +          C   + G    +       QS L       E  
Sbjct: 96  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
           ++ D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D 
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 214
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
           +    +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  F
Sbjct: 215 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 265
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
           A  S    + I++ S+D  + +WN+  +
Sbjct: 266 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 293

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 159
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 160 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 205
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 206 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 258
Query: 398 GEITCM 403
            E  C+
Sbjct: 259 NEKYCI 264

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 41  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 86
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 87  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 141
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 142 ----QSNLIVSGSFDESVRIW 158

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
           TL GH  +V+ + FS +G+ LA++ AD +I++    D    K+    ++ +      + V
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 67
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
           A++ ++  +V A+ + +          C   + G    +       QS L       E  
Sbjct: 68  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
           ++ D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D 
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 186
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
           +    +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  F
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 237
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
           A  S    + I++ S+D  + +WN+  +
Sbjct: 238 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 265

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 73  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 131
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 132 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 177
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 178 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 230
Query: 398 GEITCM 403
            E  C+
Sbjct: 231 NEKYCI 236

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 13  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 58
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 59  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 113
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 114 ----QSNLIVSGSFDESVRIW 130

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
           TL GH  +V+ + FS +G+ LA++ AD +I++    D    K+    ++ +      + V
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 71
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
           A++ ++  +V A+ + +          C   + G    +       QS L       E  
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
           ++ D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D 
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 190
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
           +    +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  F
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 241
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
           A  S    + I++ S+D  + +WN+  +
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 269

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 135
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 136 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 181
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 182 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 234
Query: 398 GEITCM 403
            E  C+
Sbjct: 235 NEKYCI 240

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 62
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 63  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 117
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 118 ----QSNLIVSGSFDESVRIW 134

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
           TL GH  +V+ + FS +G+ LA++ AD +I++    D    K+    ++ +      + V
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 70
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
           A++ ++  +V A+ + +          C   + G    +       QS L       E  
Sbjct: 71  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
           ++ D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D 
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 189
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
           +    +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  F
Sbjct: 190 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 240
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
           A  S    + I++ S+D  + +WN+  +
Sbjct: 241 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 268

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 76  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 134
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 135 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 180
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 181 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 233
Query: 398 GEITCM 403
            E  C+
Sbjct: 234 NEKYCI 239

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 16  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 61
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 62  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 116
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 117 ----QSNLIVSGSFDESVRIW 133

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
           TL GH  +V+ + FS +G+ LA++ AD +I++    D    K+    ++ +      + V
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 77
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
           A++ ++  +V A+ + +          C   + G    +       QS L       E  
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
           ++ D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D 
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 196
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
           +    +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  F
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 247
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
           A  S    + I++ S+D  + +WN+  +
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 275

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 141
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 142 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 187
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 188 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 240
Query: 398 GEITCM 403
            E  C+
Sbjct: 241 NEKYCI 246

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 68
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 69  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 123
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 124 ----QSNLIVSGSFDESVRIW 140

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 36/267 (13%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
           TL GH  +V+ + FS +G+ LA++ AD +I++    D      KF +         + VA
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVA 89
Query: 146 FADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
           ++ ++  +V A+ + +          C   + G    +       QS L       E  +
Sbjct: 90  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 197 VHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTN 248
           + D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D +
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDD 208
Query: 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
               +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  FA
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIFA 259
Query: 309 PNS----EQIITASKDGTLRVWNINVR 331
             S    + I++ S+D  + +WN+  +
Sbjct: 260 NFSVTGGKWIVSGSEDNLVYIWNLQTK 286

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 94  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 152
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 153 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 198
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 199 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 251
Query: 398 GEITCM 403
            E  C+
Sbjct: 252 NEKYCI 257

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 34  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 79
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 80  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 134
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 135 ----QSNLIVSGSFDESVRIW 151

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
           TL GH  +V+ + FS +G+ LA++ AD +I++    D    K+    ++ +      + V
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 71
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
           A++ ++  +V A+ + +          C   + G    +       QS L       E  
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
           ++ D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D 
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 190
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
           +    +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  F
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 241
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
           A  S    + I++ S+D  + +WN+  +
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 269

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 135
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 136 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 181
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 182 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 234
Query: 398 GEITCM 403
            E  C+
Sbjct: 235 NEKYCI 240

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 62
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 63  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 117
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 118 ----QSNLIVSGSFDESVRIW 134

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
           TL GH  +V+ + FS +G+ LA++ AD +I++    D    K+    ++ +      + V
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 72
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
           A++ ++  +V A+ + +          C   + G    +       QS L       E  
Sbjct: 73  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
           ++ D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D 
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 191
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
           +    +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  F
Sbjct: 192 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 242
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
           A  S    + I++ S+D  + +WN+  +
Sbjct: 243 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 270

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 78  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 136
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 137 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 182
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 183 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 235
Query: 398 GEITCM 403
            E  C+
Sbjct: 236 NEKYCI 241

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 18  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 63
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 64  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 118
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 119 ----QSNLIVSGSFDESVRIW 135

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
           TL GH  +V+ + FS +G+ LA++ AD +I++    D    K+    ++ +      + V
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 76
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
           A++ ++  +V A+ + +          C   + G    +       QS L       E  
Sbjct: 77  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
           ++ D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D 
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 195
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
           +    +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  F
Sbjct: 196 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 246
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
           A  S    + I++ S+D  + +WN+  +
Sbjct: 247 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 274

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 82  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 140
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 141 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 186
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 187 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 239
Query: 398 GEITCM 403
            E  C+
Sbjct: 240 NEKYCI 245

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 22  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 67
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 68  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 122
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 123 ----QSNLIVSGSFDESVRIW 139

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
           TL GH  +V+ + FS +G+ LA++ AD +I++    D    K+    ++ +      + V
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 77
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
           A++ ++  +V A+ + +          C   + G    +       QS L       E  
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
           ++ D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D 
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 196
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
           +    +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  F
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 247
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
           A  S    + I++ S+D  + +WN+  +
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 275

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 141
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 142 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 187
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 188 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 240
Query: 398 GEITCM 403
            E  C+
Sbjct: 241 NEKYCI 246

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 68
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 69  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 123
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 124 ----QSNLIVSGSFDESVRIW 140

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 36/267 (13%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
           TL GH  +V+ + FS +G+ LA++ AD +I++    D      KF +         + VA
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVA 75
Query: 146 FADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
           ++ ++  +V A+ + +          C   + G    +       QS L       E  +
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 197 VHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTN 248
           + D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D +
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDD 194
Query: 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
               +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  FA
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIFA 245
Query: 309 PNS----EQIITASKDGTLRVWNINVR 331
             S    + I++ S+D  + +WN+  +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTK 272

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 28/215 (13%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 138
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 139 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 184
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 185 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 237
Query: 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            E  C+ +A  ++  G   VS     S D  V +W
Sbjct: 238 NEKYCI-FANFSVTGGKWIVS----GSEDNLVYIW 267

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 65
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 120
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 121 ----QSNLIVSGSFDESVRIW 137

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 36/267 (13%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
           TL GH  +V+ + FS +G+ LA++ AD +I++    D      KF +         + VA
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVA 75
Query: 146 FADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
           ++ ++  +V A+ + +          C   + G    +       QS L       E  +
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 197 VHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTN 248
           + D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D +
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDD 194
Query: 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
               +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  FA
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIFA 245
Query: 309 PNS----EQIITASKDGTLRVWNINVR 331
             S    + I++ S+D  + +WN+  +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTK 272

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 28/215 (13%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 138
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 139 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 184
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 185 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 237
Query: 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            E  C+ +A  ++  G   VS     S D  V +W
Sbjct: 238 NEKYCI-FANFSVTGGKWIVS----GSEDNLVYIW 267

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E + ++S D  +++W          D K  K +       +
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 65
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 120
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 121 ----QSNLIVSGSFDESVRIW 137

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 36/267 (13%)
Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
           TL GH  +V+ + FS +G+ LA + AD +I++    D      KF +         + VA
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG-----KFEKTISGHKLGISDVA 75
Query: 146 FADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
           ++ ++  +V A+ + +          C   + G    +       QS L       E  +
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 197 VHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTN 248
           + D    + + TL       SA +   DGS I++S  +G    IW   +G+ L   +D +
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDD 194
Query: 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
               +    SPNG+++ AA     +K+W+  YSK   +K  T      GHK+   +  FA
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIFA 245
Query: 309 PNS----EQIITASKDGTLRVWNINVR 331
             S    + I++ S+D  + +WN+  +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTK 272

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 28/215 (13%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S ++ S S+   + IW   +GK L  +  +         +P    + + +F   V++W+ 
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 138
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
                  VK    +  L  H   V+ + F  +   I+++S DG  R+W+           
Sbjct: 139 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 184
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
           + LK     L+D +   + +  +  S +GK ILAAT  +TL+      GK L T    H+
Sbjct: 185 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 237
Query: 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            E  C+ +A  ++  G   VS     S D  V +W
Sbjct: 238 NEKYCI-FANFSVTGGKWIVS----GSEDNLVYIW 267

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
             L GH  AV+ + F+PN E +  +S D  +++W          D K  K +       +
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGA-------YDGKFEKTI-------S 65
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           G  L    ++ SSD  +L +A+   TL+   V +GK L T  K H   + C  + P    
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 120
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               Q +++ + S D+ V++W
Sbjct: 121 ----QSNLIVSGSFDESVRIW 137

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
             SP+G+FLA  A    +++W+I   K         VM L+GH+  +  L + P+ ++++
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRK--------IVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 316 TASKDGTLRVWNI 328
           + S D T+R+W++
Sbjct: 182 SGSGDRTVRIWDL 194

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 30/218 (13%)
Query: 220 TIIASCSEGTDISIWHGKTGKLLGNV---DTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
           T++ASC     I IW  +    +      + +Q      A SP G +LA+A+F A   +W
Sbjct: 29  TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
           +   ++D        V  L+GH++ V  + +AP+   + T S+D ++ VW ++     ++
Sbjct: 89  K--KNQDDF----ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE----ED 138
Query: 337 DPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQ-WLSVETGKVLDTAEK 394
           + + + VL       N  T     +      ++LA A++  T++ +   E   V     +
Sbjct: 139 EYECVSVL-------NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE 191
Query: 395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            HE  +    W+    P G +    LA+ S D+ V++W
Sbjct: 192 GHESTV----WSLAFDPSGQR----LASCSDDRTVRIW 221

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
           S  +A+ +    ++I+  ++GK   ++DT        A SP+G++LA+ A    + +++I
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
              K         +  L+GH   +  L F+P+S+ ++TAS DG ++++++ 
Sbjct: 194 ATGK--------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
           A+S NG F  +A++   +++W +   ++G  +      +  GH   V  + F+P++ QI+
Sbjct: 74  ALSNNGNFAVSASWDHSLRLWNL---QNGQCQ-----YKFLGHTKDVLSVAFSPDNRQIV 125
Query: 316 TASKDGTLRVWNI 328
           +  +D  LRVWN+
Sbjct: 126 SGGRDNALRVWNV 138

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
           +++P+ R   + A  A  K+W++   ++G+ +         GH+S +  +CF PN     
Sbjct: 202 SLAPDTRLFVSGACDASAKLWDV---REGMCRQT-----FTGHESDINAICFFPNGNAFA 253
Query: 316 TASKDGTLRVWNINVRYHL 334
           T S D T R++++     L
Sbjct: 254 TGSDDATCRLFDLRADQEL 272

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
           +++P+ R   + A  A  K+W++   ++G+ +         GH+S +  +CF PN     
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV---REGMCRQT-----FTGHESDINAICFFPNGNAFA 242
Query: 316 TASKDGTLRVWNINVRYHL 334
           T S D T R++++     L
Sbjct: 243 TGSDDATCRLFDLRADQEL 261

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
           + TL+GH   V GL + SDG  LA+   D V+++    DA S   KF + N        A
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW---DARSSIPKFTKTNH--NAAVKA 264
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           VA+    ++++          ++ +        N     S++    + W  H     + I
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQV--TSLIWSPH----SKEI 318
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNG 261
           ++      T+G  D            ++SIW   +  L   VD   +  +   +A+SP+G
Sbjct: 319 MS------THGFPD-----------NNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG 361
Query: 262 RFLAAAAFTADVKVWEIVYSKDGLVKAV 289
           R L+ AA   ++K W  VY  D + + +
Sbjct: 362 RILSTAASDENLKFWR-VYDGDHVKRPI 388

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
           +++P+ R   + A  A  K+W++   ++G+ +         GH+S +  +CF PN     
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV---REGMCRQT-----FTGHESDINAICFFPNGNAFA 242
Query: 316 TASKDGTLRVWNINVRYHL 334
           T S D T R++++     L
Sbjct: 243 TGSDDATCRLFDLRADQEL 261

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
           +++P+ R   + A  A  K+W++   ++G+ +         GH+S +  +CF PN     
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV---REGMCRQT-----FTGHESDINAICFFPNGNAFA 242
Query: 316 TASKDGTLRVWNINVRYHL 334
           T S D T R++++     L
Sbjct: 243 TGSDDATCRLFDLRADQEL 261

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
           +++P+ R   + A  A  K+W++   ++G+ +         GH+S +  +CF PN     
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV---REGMCRQT-----FTGHESDINAICFFPNGNAFA 242
Query: 316 TASKDGTLRVWNINVRYHL 334
           T S D T R++++     L
Sbjct: 243 TGSDDATCRLFDLRADQEL 261

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 217 DGSTIIASCSEGTDISIWH-GKTGKLLGNVDTNQLKNNM-----AAISPNGRFLAAAAFT 270
           D + II S S    I +W   K  K  G V   +L  +        +S +G+F  + ++ 
Sbjct: 393 DNADIIVSASRDKSIILWKLTKDDKAYG-VAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451
Query: 271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
            ++++W++         A  S  +  GH   V  + F+ ++ QI++AS+D T+++WN
Sbjct: 452 GELRLWDLA--------AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	440
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-32
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-32
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-31
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-29
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-29
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-28
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-27
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	8e-25
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-23
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	9e-21
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	8e-15
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-04
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-31
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-27
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-25
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	8e-25
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-24
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-22
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-20
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	6e-18
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	9e-08
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-04
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-29
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-21
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-19
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	8e-17
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-15
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	5e-14
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-12
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-09
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-05
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	6e-25
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	4e-09
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	2e-05
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	3e-24
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	2e-16
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	8e-15
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	8e-15
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	9e-04
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	9e-24
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	1e-21
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	3e-14
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	9e-24
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	3e-19
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	3e-14
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	5e-14
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	9e-07
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	3e-06
3ow8_A	321	WD repeat-containing protein 61; structural genomi	1e-23
3ow8_A	321	WD repeat-containing protein 61; structural genomi	4e-12
3ow8_A	321	WD repeat-containing protein 61; structural genomi	3e-09
3ow8_A	321	WD repeat-containing protein 61; structural genomi	5e-05
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	6e-23
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	9e-16
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	6e-14
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	8e-07
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	2e-22
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	1e-06
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	3e-06
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	3e-06
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	4e-22
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	7e-21
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	3e-17
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	6e-09
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	5e-22
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	7e-20
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	5e-19
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	5e-17
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	6e-22
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-17
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-15
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-08
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	5e-06
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	3e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	7e-04
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	1e-20
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	6e-16
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	6e-11
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	5e-09
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	2e-04
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	3e-04
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	2e-20
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	3e-16
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-05
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	4e-20
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	3e-16
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-15
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-05
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	1e-19
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	1e-16
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	7e-12
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	9e-19
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-17
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-16
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	5e-12
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-10
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	4e-06
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	6e-06
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	9e-19
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	1e-14
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	2e-14
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	4e-12
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	5e-12
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	2e-06
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	1e-05
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	4e-05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	7e-18
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	7e-17
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	1e-14
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	5e-10
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	4e-07
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	1e-05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	3e-05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	4e-05
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	1e-17
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	2e-16
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	8e-11
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	3e-10
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	2e-17
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	2e-09
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	3e-08
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	7e-05
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	2e-17
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	4e-17
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	8e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-17
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-15
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	8e-12
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	9e-07
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-04
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	4e-17
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	2e-15
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-15
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	1e-14
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-08
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	2e-05
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	2e-04
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-04
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	4e-17
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	1e-16
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	9e-15
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	2e-13
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	1e-05
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	1e-04
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	4e-17
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	4e-16
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-15
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-13
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	6e-10
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-09
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-06
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-06
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	6e-06
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-05
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-05
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	3e-04
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	4e-17
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	3e-13
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	5e-11
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	6e-10
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-07
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	9e-05
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	1e-15
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	9e-14
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	1e-13
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	2e-04
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	7e-04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-15
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	5e-12
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	6e-12
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-11
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	8e-10
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	4e-09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-08
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-06
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-04
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	3e-15
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	7e-15
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	3e-15
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	4e-15
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	2e-10
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	1e-06
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	4e-05
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	4e-15
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	9e-09
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	4e-15
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-14
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-14
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	3e-10
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	5e-07
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-06
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-04
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	7e-04
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	5e-15
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	3e-14
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-13
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	2e-10
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	9e-15
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	1e-05
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	9e-15
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-13
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-12
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-10
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	6e-06
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	9e-06
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	1e-05
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	7e-05
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	7e-04
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	1e-14
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	3e-14
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	2e-13
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	4e-12
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	1e-05
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	4e-05
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	1e-04
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-14
2pm7_B	297	Protein transport protein SEC13, protein transport	3e-13
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-10
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-08
2pm7_B	297	Protein transport protein SEC13, protein transport	4e-06
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	3e-14
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	9e-12
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	1e-11
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	3e-08
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	3e-06
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	4e-14
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	2e-12
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	7e-05
3jrp_A	379	Fusion protein of protein transport protein SEC13	2e-13
3jrp_A	379	Fusion protein of protein transport protein SEC13	7e-13
3jrp_A	379	Fusion protein of protein transport protein SEC13	2e-10
3jrp_A	379	Fusion protein of protein transport protein SEC13	2e-08
3jrp_A	379	Fusion protein of protein transport protein SEC13	3e-08
3jrp_A	379	Fusion protein of protein transport protein SEC13	5e-06
3jrp_A	379	Fusion protein of protein transport protein SEC13	1e-05
3jro_A	753	Fusion protein of protein transport protein SEC13	3e-13
3jro_A	753	Fusion protein of protein transport protein SEC13	1e-12
3jro_A	753	Fusion protein of protein transport protein SEC13	2e-10
3jro_A	753	Fusion protein of protein transport protein SEC13	1e-08
3jro_A	753	Fusion protein of protein transport protein SEC13	2e-08
3jro_A	753	Fusion protein of protein transport protein SEC13	8e-06
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	4e-13
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	8e-06
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	5e-13
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	2e-11
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	3e-10
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	9e-13
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	3e-12
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	2e-09
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-07
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	5e-07
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	4e-04
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-12
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	7e-12
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	8e-11
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-08
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	4e-08
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-06
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-04
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	2e-12
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	3e-11
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	1e-10
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	5e-10
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	5e-09
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	4e-04
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	6e-12
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	2e-11
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	1e-10
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	1e-11
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	2e-09
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	4e-08
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	4e-08
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	1e-11
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	5e-11
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	8e-06
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	1e-06
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	3e-04
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	1e-06
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	4e-04
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	9e-06
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	1e-05
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	3e-05
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	6e-05
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	2e-04
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	4e-04
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	7e-04

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  130 bits (329), Expect = 1e-32
 Identities = 52/352 (14%), Positives = 107/352 (30%), Gaps = 67/352 (19%)

Query: 86   TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
                    V+  C S   + +A    DG I++  ++  +++ F               + 
Sbjct: 956  IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI--IELPNNRVFSSGV---GHKKAVRHIQ 1010

Query: 146  FADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDKRA 202
            F  +  +++ +             E+  I   +   G     L            H +  
Sbjct: 1011 FTADGKTLISS------------SEDSVIQVWNWQTGDYVF-LQA----------HQETV 1047

Query: 203  ILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR 262
                          D    + S S    + +W+  TG++  +   +Q      AIS +  
Sbjct: 1048 KDFRL-------LQDSR--LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098

Query: 263  FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT 322
              ++ +     K+W            ++ + +LKGH   V    F+ +   + T   +G 
Sbjct: 1099 KFSSTSADKTAKIWS--------FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE 1150

Query: 323  LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLS 382
            +R+WN++    L                          +  S D K L +  G  L+W +
Sbjct: 1151 IRIWNVSDGQLLHSCAPISVEEGT-----ATHGGWVTDVCFSPDSKTLVSA-GGYLKWWN 1204

Query: 383  VETGKVLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
            V TG    T    +   +  +  +P  +T            T      + + 
Sbjct: 1205 VATGDSSQTF-YTNGTNLKKIHVSPDFRTY----------VTVDNLGILYIL 1245

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  130 bits (328), Expect = 1e-32
 Identities = 53/356 (14%), Positives = 115/356 (32%), Gaps = 87/356 (24%)

Query: 86   TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPPTA 143
               GH  ++    FS        A +   + +   +  S       R     G       
Sbjct: 835  IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW--NIDSRLKVADCR-----GHLSWVHG 887

Query: 144  VAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDK 200
            V F+ + +S +      +        +++ I    T +  + S +          +    
Sbjct: 888  VMFSPDGSSFL------TA------SDDQTIRVWETKKVCKNSAIV-------LKQEI-- 926

Query: 201  RAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL----GNVDTNQLKNNMAA 256
                        +   + + +  +      + +  GKTG++       V           
Sbjct: 927  ---------DVVF-QENETMV-LAVDNIRGLQLIAGKTGQIDYLPEAQVSC-------CC 968

Query: 257  ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
            +SP+  ++A       +K+ E+    +             GHK AV  + F  + + +I+
Sbjct: 969  LSPHLEYVAFGDEDGAIKIIEL---PNN-----RVFSSGVGHKKAVRHIQFTADGKTLIS 1020

Query: 317  ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
            +S+D  ++VWN         D   L+                    L  D ++L+ +   
Sbjct: 1021 SSEDSVIQVWNWQ-----TGDYVFLQ----------AHQETVKDFRLLQDSRLLSWSFDG 1065

Query: 377  TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            T++  +V TG++       H+G +   A +        +     +++S DK  K+W
Sbjct: 1066 TVKVWNVITGRIERDFT-CHQGTVLSCAISSD----ATK----FSSTSADKTAKIW 1112

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  127 bits (321), Expect = 1e-31
 Identities = 57/353 (16%), Positives = 112/353 (31%), Gaps = 77/353 (21%)

Query: 84   VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
            V   +GH   V G+ FS DG    TA  D  IRV +         K  + +         
Sbjct: 875  VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK-------KVCKNSAIVLKQEID 927

Query: 144  VAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDK 200
            V F +N T ++                 + +   +   G+                V   
Sbjct: 928  VVFQENETMVLAV------------DNIRGLQLIAGKTGQIDYLPEAQ--------VS-- 965

Query: 201  RAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN 260
                          +      +A   E   I I      ++  +   ++        + +
Sbjct: 966  ---------CCCL-SPHLEY-VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1014

Query: 261  GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD 320
            G+ L +++  + ++VW                + L+ H+  V       +S ++++ S D
Sbjct: 1015 GKTLISSSEDSVIQVWNW---------QTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFD 1064

Query: 321  GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQ 379
            GT++VWN+          +  +                   ++SSD    +  +   T +
Sbjct: 1065 GTVKVWNV-------ITGRIERDF-------TCHQGTVLSCAISSDATKFSSTSADKTAK 1110

Query: 380  WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
              S +    L    K H G + C A++      G      LAT   + ++++W
Sbjct: 1111 IWSFDLLSPLHEL-KGHNGCVRCSAFSLD----GIL----LATGDDNGEIRIW 1154

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  119 bits (301), Expect = 4e-29
 Identities = 51/389 (13%), Positives = 130/389 (33%), Gaps = 69/389 (17%)

Query: 54  SQPISKKSHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADG 113
           ++  +K+       +      +  ++       ++ H D+V   CFS DG+ +A+  AD 
Sbjct: 580 AKLQAKQEGDTGRLYLEWINKKTIKNL--SRLVVRPHTDAVYHACFSQDGQRIASCGADK 637

Query: 114 VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKA 173
            ++V      + +    ++            AF+ + + I   + +            K 
Sbjct: 638 TLQVF--KAETGEKLLDIKA---HEDEVLCCAFSSDDSYIATCSAD------------KK 680

Query: 174 I---STNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS-TIIASCSEGT 229
           +    +  GK                 H ++     F       T   +  ++A+ S   
Sbjct: 681 VKIWDSATGKLVHTYDE----------HSEQVNCCHF-------TNKSNHLLLATGSNDF 723

Query: 230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI-----VYSKDG 284
            + +W     +    +  +    N    SP+   LA+ +    +++W++       S + 
Sbjct: 724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783

Query: 285 LVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL 344
               ++S    +  +  V    ++ + ++II A+K+    ++          D  T  +L
Sbjct: 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV-LLF----------DIHTSGLL 832

Query: 345 PIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQWLSVETGKVLDTAEKAHEGEITCM 403
                   G          S    +   A     ++  ++++   +      H   +  +
Sbjct: 833 AEIH---TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGV 888

Query: 404 AWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            ++P     G+       T+S D+ +++W
Sbjct: 889 MFSPD----GSS----FLTASDDQTIRVW 909

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  119 bits (301), Expect = 4e-29
 Identities = 55/361 (15%), Positives = 110/361 (30%), Gaps = 78/361 (21%)

Query: 84   VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASS-KSFKFLRINLPPGGPP- 141
             NT+ GH +SV    FS D + LA+  ADG +R+  +  A+  KS    R  L    PP 
Sbjct: 736  RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 795

Query: 142  ------TAVAFADNATSIVVATHNLSGCSLYMYGEEKAI--STNEGKQQSKLPGPEIKWE 193
                     +++ +   I+VA             + K +    +     +++        
Sbjct: 796  DVEVIVKCCSWSADGDKIIVA------------AKNKVLLFDIHTSGLLAEI-------- 835

Query: 194  HHKVHDKRAILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN 252
             H  H    I    F       +               + +W+  +   + +   +    
Sbjct: 836  -HTGHHST-IQYCDF-------SPYDHL-AVIALSQYCVELWNIDSRLKVADCRGHLSWV 885

Query: 253  NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE 312
            +    SP+G     A+    ++VWE                           + F  N  
Sbjct: 886  HGVMFSPDGSSFLTASDDQTIRVWE----------TKKVCKNSAIVLKQEIDVVFQENET 935

Query: 313  QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA- 371
             ++       L++             KT ++             Q     LS   + +A 
Sbjct: 936  MVLAVDNIRGLQLI----------AGKTGQID-------YLPEAQVSCCCLSPHLEYVAF 978

Query: 372  ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL 431
                  ++ + +   +V  +    H+  +  + +       G      L +SS D  +++
Sbjct: 979  GDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTAD----G----KTLISSSEDSVIQV 1029

Query: 432  W 432
            W
Sbjct: 1030 W 1030

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  118 bits (297), Expect = 1e-28
 Identities = 53/354 (14%), Positives = 111/354 (31%), Gaps = 62/354 (17%)

Query: 84  VNTLKGHGDSVTGLCFSSDGK--CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141
           V+T   H + V    F++      LAT   D  +++   D    +    +  +       
Sbjct: 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL--WDLNQKECRNTMFGH---TNSV 746

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKR 201
               F+ +   +   + +         G  +        ++  +             +  
Sbjct: 747 NHCRFSPDDELLASCSAD---------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797

Query: 202 AILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-NMAAISPN 260
            ++       ++ +ADG  I    ++   + ++   T  LL  + T           SP 
Sbjct: 798 EVIVK---CCSW-SADGDKI-IVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 851

Query: 261 GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD 320
                 A     V++W I             V   +GH S V  + F+P+    +TAS D
Sbjct: 852 DHLAVIALSQYCVELWNI---DSR-----LKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903

Query: 321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQ 379
            T+RVW          + K +      +L           +    +  ++    +   LQ
Sbjct: 904 QTIRVW----------ETKKVCKNSAIVLKQEID------VVFQENETMVLAVDNIRGLQ 947

Query: 380 -WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
              + +TG++        E +++C   +P            +A    D  +K+ 
Sbjct: 948 LI-AGKTGQIDYL----PEAQVSCCCLSPH----LEY----VAFGDEDGAIKII 988

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  114 bits (288), Expect = 2e-27
 Identities = 51/362 (14%), Positives = 107/362 (29%), Gaps = 77/362 (21%)

Query: 75   QNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN 134
              KR      +  +     V    +S+DG  +  A  + V+     D  +S       I+
Sbjct: 782  NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL---FDIHTSG--LLAEIH 836

Query: 135  LPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIK 191
                       F+      V+A              +  +   + +   + +   G    
Sbjct: 837  TGHHSTIQYCDFSPYDHLAVIA------------LSQYCVELWNIDSRLKVADCRG---- 880

Query: 192  WEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK 251
                  H              + + DGS+   + S+   I +W  K       +   Q  
Sbjct: 881  ------HLSWV------HGVMF-SPDGSS-FLTASDDQTIRVWETKKVCKNSAIVLKQ-- 924

Query: 252  NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS 311
                    N   + A      +++               +       ++ V+  C +P+ 
Sbjct: 925  EIDVVFQENETMVLAVDNIRGLQLIA-----------GKTGQIDYLPEAQVSCCCLSPHL 973

Query: 312  EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371
            E +    +DG +++           +    +V     +    A      +  ++DGK L 
Sbjct: 974  EYVAFGDEDGAIKII----------ELPNNRVFS-SGVGHKKAVRH---IQFTADGKTLI 1019

Query: 372  -ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK 430
             ++  S +Q  + +TG  +    +AH+  +                 S L + S D  VK
Sbjct: 1020 SSSEDSVIQVWNWQTGDYV--FLQAHQETVKDFRLLQD---------SRLLSWSFDGTVK 1068

Query: 431  LW 432
            +W
Sbjct: 1069 VW 1070

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  106 bits (267), Expect = 8e-25
 Identities = 59/360 (16%), Positives = 116/360 (32%), Gaps = 86/360 (23%)

Query: 86   TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
                       + F  +   +        +++       +      +I+  P    +   
Sbjct: 917  NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI---AGKT-----GQIDYLPEAQVSCCC 968

Query: 146  FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILT 205
             + +   +     +         G  K I     +  S   G          H K A+  
Sbjct: 969  LSPHLEYVAFGDED---------GAIKIIELPNNRVFSSGVG----------HKK-AVRH 1008

Query: 206  L-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG-NVDTNQLKNNMAAISPNGRF 263
            + F       TADG T + S SE + I +W+ +TG  +        +      +  + R 
Sbjct: 1009 IQF-------TADGKT-LISSSEDSVIQVWNWQTGDYVFLQAHQETV--KDFRLLQDSR- 1057

Query: 264  LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323
            L + +F   VKVW +     G ++          H+  V     + ++ +  + S D T 
Sbjct: 1058 LLSWSFDGTVKVWNV---ITGRIERD-----FTCHQGTVLSCAISSDATKFSSTSADKTA 1109

Query: 324  RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQWLS 382
            ++W+ ++   L      LK          G        + S DG +LA       ++  +
Sbjct: 1110 KIWSFDLLSPL----HELK----------GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155

Query: 383  VETGKVLDTAE--------KAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
            V  G++L +            H G +T + ++P  KT          L ++     +K W
Sbjct: 1156 VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT----------LVSAG--GYLKWW 1203

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  101 bits (252), Expect = 7e-23
 Identities = 38/255 (14%), Positives = 83/255 (32%), Gaps = 58/255 (22%)

Query: 86   TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
             L+ H ++V       D + L +   DG ++V   +  + +  +    +    G   + A
Sbjct: 1039 FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKV--WNVITGRIERDFTCH---QGTVLSCA 1092

Query: 146  FADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDKRA 202
             + +AT                   +K     S +      +L G          H+   
Sbjct: 1093 ISSDATKFSST------------SADKTAKIWSFDLLSPLHELKG----------HNGCV 1130

Query: 203  ILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM-------- 254
                    + + + DG  + A+  +  +I IW+   G+LL +     ++           
Sbjct: 1131 R------CSAF-SLDGILL-ATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1182

Query: 255  -AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ 313
                SP+ + L +A     +K W +     G      S      + + +  +  +P+   
Sbjct: 1183 DVCFSPDSKTLVSAGGY--LKWWNV---ATG-----DSSQTFYTNGTNLKKIHVSPDFRT 1232

Query: 314  IITASKDGTLRVWNI 328
             +T    G L +  +
Sbjct: 1233 YVTVDNLGILYILQV 1247

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 94.5 bits (235), Expect = 9e-21
 Identities = 50/312 (16%), Positives = 104/312 (33%), Gaps = 53/312 (16%)

Query: 145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTN---EGKQQSKLPGPEIKWEHHKVHDKR 201
             + N   +                E   +      + KQ+       ++W + K     
Sbjct: 547 FLSLNGHLLGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNL 606

Query: 202 AILTLFGASATYGTA----DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI 257
           + L +   +     A    DG  I ASC     + ++  +TG+ L ++  ++ +    A 
Sbjct: 607 SRLVVRPHTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 665

Query: 258 SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-- 315
           S +  ++A  +    VK+W+      G       V     H   V    F   S  ++  
Sbjct: 666 SSDDSYIATCSADKKVKIWDS---ATG-----KLVHTYDEHSEQVNCCHFTNKSNHLLLA 717

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATH 374
           T S D  L++W++N +        T+           G T   +    S D ++LA  + 
Sbjct: 718 TGSNDFFLKLWDLNQKECR----NTMF----------GHTNSVNHCRFSPDDELLASCSA 763

Query: 375 GSTLQWLSVETGKVLDT------------AEKAHEGEITCMAWAPKTIPMGNQQVSVLAT 422
             TL+   V +     +              +  E  + C +W+      G++    +  
Sbjct: 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD----GDK----IIV 815

Query: 423 SSVDKKVKLWLA 434
           ++ +K +   + 
Sbjct: 816 AAKNKVLLFDIH 827

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 76.0 bits (187), Expect = 8e-15
 Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 47/219 (21%)

Query: 240 KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW-----EIVYSKDGLVKAVT---- 290
            +L   D    +N    +S NG  L    F   V++           +   ++A      
Sbjct: 531 HILDEKDCAVCENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDT 590

Query: 291 ----------------SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHL 334
                           S + ++ H  AV   CF+ + ++I +   D TL+V+        
Sbjct: 591 GRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA------ 644

Query: 335 DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQWLSVETGKVLDTAE 393
            E  + L  +            +    + SSD   +A  +    ++     TGK++ T +
Sbjct: 645 -ETGEKLLDI-------KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696

Query: 394 KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             H  ++ C  +             +LAT S D  +KLW
Sbjct: 697 -EHSEQVNCCHFTN------KSNHLLLATGSNDFFLKLW 728

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 6/34 (17%), Positives = 14/34 (41%)

Query: 84   VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
              T   +G ++  +  S D +   T    G++ +
Sbjct: 1211 SQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYI 1244

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 85   NTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
                 HG  VT +CFS D K L +  A G ++ 
Sbjct: 1172 EGTATHGGWVTDVCFSPDSKTLVS--AGGYLKW 1202

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  125 bits (316), Expect = 3e-31
 Identities = 52/355 (14%), Positives = 106/355 (29%), Gaps = 55/355 (15%)

Query: 81  PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP 140
             D      H    T    S  G   A+    G +R+    D +  +           GP
Sbjct: 49  LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW---DTTQTTHILKTTIPVFSGP 105

Query: 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDK 200
              +++   +  I                       + G     L G            +
Sbjct: 106 VKDISWDSESKRIAAV-------GEGRERFGHVFLFDTGTSNGNLTG----------QAR 148

Query: 201 RAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN 260
             +      S  +        I S S+   ++I+ G   K       +    +    +P+
Sbjct: 149 A-MN-----SVDF-KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 201

Query: 261 GRFLAAAAFTADVKVWEIVYSKDG--LVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
           G   A+      + ++      DG          ++   H  +V  L ++P+  +I +AS
Sbjct: 202 GSLFASTGGDGTIVLYNG---VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258

Query: 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGST 377
            D T+++W          +  TLKV     + +     Q   L +    + L   +    
Sbjct: 259 ADKTIKIW----------NVATLKVEKTIPVGTRIEDQQ---LGIIWTKQALVSISANGF 305

Query: 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           + +++ E G +       H   IT ++ +      G      L ++  +  +  W
Sbjct: 306 INFVNPELGSIDQV-RYGHNKAITALSSSAD----G----KTLFSADAEGHINSW 351

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  113 bits (286), Expect = 2e-27
 Identities = 46/359 (12%), Positives = 100/359 (27%), Gaps = 71/359 (19%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKC-LATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142
              L G   ++  + F       + +   D  + + +        FKF            
Sbjct: 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-----PPFKFKSTFGEHTKFVH 194

Query: 143 AVAFADNATSIVVATHNLSGCS-----LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKV 197
           +V +  + +         S        LY        +  +G +        +K   H  
Sbjct: 195 SVRYNPDGSLFA------STGGDGTIVLY--------NGVDGTKTGVFEDDSLKNVAHS- 239

Query: 198 HDKRAILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA- 255
               ++  L +       + DG+ I AS S    I IW+  T K+   +       +   
Sbjct: 240 ---GSVFGLTW-------SPDGTKI-ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
            I    + L + +    +        + G +  V       GH  A+T L  + + + + 
Sbjct: 289 GIIWTKQALVSISANGFINFVNP---ELGSIDQV-----RYGHNKAITALSSSADGKTLF 340

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG 375
           +A  +G +  W          D  T     +              +  +S G +   +  
Sbjct: 341 SADAEGHINSW----------DISTGISNRVFPDVHATMITG---IKTTSKGDLFTVSWD 387

Query: 376 STLQ--WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             L+                     +   +A +             +A ++  K + ++
Sbjct: 388 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD---------GDIAVAACYKHIAIY 437

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  107 bits (270), Expect = 2e-25
 Identities = 54/353 (15%), Positives = 108/353 (30%), Gaps = 66/353 (18%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
                GH  ++T L  S+DGK L +A A+G I     D ++  S +            T 
Sbjct: 317 DQVRYGHNKAITALSSSADGKTLFSADAEGHINS--WDISTGISNRVFPDV--HATMITG 372

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           +          V+  +            K +        S                 + +
Sbjct: 373 IKTTSKGDLFTVSWDDHL----------KVVPAGGSGVDSSKA-------VANKLSSQPL 415

Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
                      +ADG  I  +      I+I+    GKL     +    ++  A+S + +F
Sbjct: 416 GLAV-------SADG-DIAVAACYKH-IAIY--SHGKLTEVPISYN--SSCVALSNDKQF 462

Query: 264 LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323
           +A     + V V+++       V  V        H + +T + F+ N   ++   +   +
Sbjct: 463 VAVGGQDSKVHVYKL---SGASVSEVK----TIVHPAEITSVAFSNNGAFLVATDQSRKV 515

Query: 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQWLS 382
             +++   + L     +              T +   +S S D   LA  +  +++   +
Sbjct: 516 IPYSVANNFELAH-TNSWT----------FHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564

Query: 383 VETG-KVLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
           +          + AH              TI           ++  D  +K W
Sbjct: 565 MNKPSDHPIIIKGAHAMSSVNSVIWLNETTI----------VSAGQDSNIKFW 607

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  106 bits (266), Expect = 8e-25
 Identities = 54/356 (15%), Positives = 107/356 (30%), Gaps = 70/356 (19%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG----G 139
            +T   H   V  + ++ DG   A+   DG I ++  +            +        G
Sbjct: 183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY--NGVDGTKTGVFEDDSLKNVAHSG 240

Query: 140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHK 196
               + ++ + T I       S         +K I   +    K +  +P         +
Sbjct: 241 SVFGLTWSPDGTKIA------SA------SADKTIKIWNVATLKVEKTIP------VGTR 282

Query: 197 VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAA 256
           + D+                     + S S    I+  + + G +      +       +
Sbjct: 283 IEDQ---------QLGI-IWTKQA-LVSISANGFINFVNPELGSIDQVRYGHNKAITALS 331

Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
            S +G+ L +A     +  W+I     G+   V        H + +T +        + T
Sbjct: 332 SSADGKTLFSADAEGHINSWDI---STGISNRVF----PDVHATMITGIKTTSKG-DLFT 383

Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
            S D  L+V                  +      +N  + Q   L++S+DG I  A    
Sbjct: 384 VSWDDHLKVVPA-----------GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 432

Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            +   S   GK+ +          +C+A +             +A    D KV ++
Sbjct: 433 HIAIYS--HGKLTEV---PISYNSSCVALSNDK--------QFVAVGGQDSKVHVY 475

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  104 bits (261), Expect = 4e-24
 Identities = 60/361 (16%), Positives = 111/361 (30%), Gaps = 84/361 (23%)

Query: 83  DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GP 140
           D      H  SV GL +S DG  +A+A AD  I++    + ++     +   +P G    
Sbjct: 231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW---NVATLK---VEKTIPVGTRIE 284

Query: 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKV 197
              +       ++V      S            I   +   G       G          
Sbjct: 285 DQQLGIIWTKQALV------SI------SANGFINFVNPELGSIDQVRYG---------- 322

Query: 198 HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD---TNQLKNNM 254
           H+K         + +  +ADG T + S      I+ W   TG             +    
Sbjct: 323 HNKAIT------ALSS-SADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMI--TG 372

Query: 255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314
              +  G  L   ++   +KV     S     KAV          S    L  + +   I
Sbjct: 373 IKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAV-----ANKLSSQPLGLAVSADG-DI 425

Query: 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-AT 373
             A+    + +++              K+  +P+  ++        ++LS+D + +A   
Sbjct: 426 AVAACYKHIAIYS------------HGKLTEVPISYNSSC------VALSNDKQFVAVGG 467

Query: 374 HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKL 431
             S +    +    V +     H  EIT +A++               L  +   +KV  
Sbjct: 468 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF----------LVATDQSRKVIP 517

Query: 432 W 432
           +
Sbjct: 518 Y 518

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 98.4 bits (246), Expect = 3e-22
 Identities = 50/359 (13%), Positives = 94/359 (26%), Gaps = 76/359 (21%)

Query: 87  LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPPTAV 144
            +    +   L  +  G  +       V  V  +   +    +              T  
Sbjct: 14  PRTARGTAVVLGNTPAGDKIQYCNGTSVYTV-PVGSLTDT--EIYT-----EHSHQTTVA 65

Query: 145 AFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDKR 201
             + +           SG           +    T +     K            V    
Sbjct: 66  KTSPSGYYCA------SG------DVHGNVRIWDTTQTTHILKTT--------IPVFSGP 105

Query: 202 AILTL-FGASATYGTADGSTIIASCSEGTD--ISIWHGKTGKLLGNVDTNQLKNNMAAIS 258
            +  + +        ++    IA+  EG +    ++   TG   GN+       N     
Sbjct: 106 -VKDISW-------DSESKR-IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK 156

Query: 259 PNGRFLAAAA---FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
           P+  F   +     T  V ++E                    H   V  + + P+     
Sbjct: 157 PSRPFRIISGSDDNT--VAIFEG---PPF-----KFKSTFGEHTKFVHSVRYNPDGSLFA 206

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATH 374
           +   DGT+ ++N         D     V     L +   +     L+ S DG  +A A+ 
Sbjct: 207 STGGDGTIVLYNG-------VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259

Query: 375 GSTLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             T++ W +V T KV  T       E   +                L + S +  +   
Sbjct: 260 DKTIKIW-NVATLKVEKTIPVGTRIEDQQLGII----WTKQA----LVSISANGFINFV 309

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 92.6 bits (231), Expect = 3e-20
 Identities = 47/359 (13%), Positives = 102/359 (28%), Gaps = 86/359 (23%)

Query: 87  LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF 146
             G       L      + L +  A+G I    ++       +            TA++ 
Sbjct: 278 PVGTRIEDQQLGIIWTKQALVSISANGFINF--VNPELGSIDQVRY---GHNKAITALSS 332

Query: 147 ADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           + +  ++       S         E  I     + G      P      + H       I
Sbjct: 333 SADGKTLF------SA------DAEGHINSWDISTGISNRVFP------DVHA----TMI 370

Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN--NMAAISPNG 261
             +        T     +     +     +  G +G        N+L +     A+S +G
Sbjct: 371 TGIK-------TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG 423

Query: 262 RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG 321
             +A AA    + ++       G             +    + +  + + + +    +D 
Sbjct: 424 D-IAVAACYKHIAIY-----SHG-----KLTEVPISYN--SSCVALSNDKQFVAVGGQDS 470

Query: 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS---TL 378
            + V+ ++             V  +  +           ++ S++G  L A        +
Sbjct: 471 KVHVYKLS----------GASVSEVKTIVHPAEITS---VAFSNNGAFLVA--TDQSRKV 515

Query: 379 Q-WLSVETGKVLDTAE--KAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
             + SV     L        H  ++ C++W+P    +          AT S+D  V +W
Sbjct: 516 IPY-SVANNFELAHTNSWTFHTAKVACVSWSPDNVRL----------ATGSLDNSVIVW 563

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 85.3 bits (212), Expect = 6e-18
 Identities = 34/250 (13%), Positives = 73/250 (29%), Gaps = 53/250 (21%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
                     GL  S+DG  +A A     I +                 +P     + VA
Sbjct: 406 VANKLSSQPLGLAVSADGD-IAVAACYKHIAI--YSHGK-------LTEVPISYNSSCVA 455

Query: 146 FADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDKRA 202
            +++   + V             G++  +     +           E+K   H       
Sbjct: 456 LSNDKQFVAVG------------GQDSKVHVYKLSGASVS------EVKTIVHP----AE 493

Query: 203 ILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM---AAIS 258
           I ++ F       + +G+ +  +  +   +  +       L + ++           + S
Sbjct: 494 ITSVAF-------SNNGAFL-VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 545

Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
           P+   LA  +    V VW +          +        H  +        N   I++A 
Sbjct: 546 PDNVRLATGSLDNSVIVWNM---NKPSDHPIII---KGAHAMSSVNSVIWLNETTIVSAG 599

Query: 319 KDGTLRVWNI 328
           +D  ++ WN+
Sbjct: 600 QDSNIKFWNV 609

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 28/203 (13%), Positives = 65/203 (32%), Gaps = 40/203 (19%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
                 +  + + +  S+D + +A    D  + V+KL  AS    K +          T+
Sbjct: 443 TEVPISY--NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP----AEITS 496

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDK 200
           VAF++N   +V    +            + +   S     + +        W  H     
Sbjct: 497 VAFSNNGAFLVATDQS------------RKVIPYSVANNFELAHTNS----WTFH----T 536

Query: 201 RAILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN--NMAAI 257
             +  + +       + D    +A+ S    + +W+         +           + I
Sbjct: 537 AKVACVSW-------SPDN-VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 588

Query: 258 SPNGRFLAAAAFTADVKVWEIVY 280
             N   + +A   +++K W + +
Sbjct: 589 WLNETTIVSAGQDSNIKFWNVPF 611

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 16/150 (10%), Positives = 37/150 (24%), Gaps = 37/150 (24%)

Query: 294 QLKGHKSAVTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS 351
             +  +     L   P  ++I   +     T+ V                ++        
Sbjct: 13  LPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVG----------SLTDTEIY------- 55

Query: 352 NGATLQYDRLSLSSDGKILAATHGS---TLQ-WLSVETGKVLDTAE-KAHEGEITCMAWA 406
              + Q      S  G   A+  G     ++ W        +         G +  ++W 
Sbjct: 56  TEHSHQTTVAKTSPSGYYCAS--GDVHGNVRIW-DTTQTTHILKTTIPVFSGPVKDISWD 112

Query: 407 P--KTIPMGNQQVSVLATSSVDKKVKLWLA 434
              K I       +       ++   ++L 
Sbjct: 113 SESKRI------AA--VGEGRERFGHVFLF 134

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  120 bits (303), Expect = 1e-29
 Identities = 63/376 (16%), Positives = 118/376 (31%), Gaps = 78/376 (20%)

Query: 75  QNKRHHPLDVNTLKGHGDS-VTGLCFS--SDGKCLATACADGVIRVHKLDDASSKSFKFL 131
            +       V    GHG S VT + FS     + L +    G + V        K    +
Sbjct: 47  DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW--GWTFDKESNSV 104

Query: 132 RINLPP-----GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQS 183
            +N+        GP + +++      + V             G +      S + G    
Sbjct: 105 EVNVKSEFQVLAGPISDISWDFEGRRLCVV----GE------GRDNFGVFISWDSGNSLG 154

Query: 184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243
           ++ G          H +R        +             +  +   +  + G   K   
Sbjct: 155 EVSG----------HSQRIN------ACHL-KQSRPMRSMTVGDDGSVVFYQGPPFKFSA 197

Query: 244 NVDTNQLKNNM---AAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299
           +  T+  + +       SP+ G F+        +  ++    K G       +  ++  +
Sbjct: 198 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG---KSG-----EFLKYIEDDQ 249

Query: 300 SAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356
             V    FA    +S++  T   D T+RVW          D  T K +    LD      
Sbjct: 250 EPVQGGIFALSWLDSQKFATVGADATIRVW----------DVTTSKCVQKWTLDKQQLGN 299

Query: 357 QYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQ 416
           Q   +  + +G+I++ +   TL +  +   +VL T    H   IT +   P         
Sbjct: 300 QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTI-SGHNKGITALTVNP--------- 349

Query: 417 VSVLATSSVDKKVKLW 432
              L + S D ++  W
Sbjct: 350 ---LISGSYDGRIMEW 362

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 95.8 bits (239), Expect = 2e-21
 Identities = 52/383 (13%), Positives = 101/383 (26%), Gaps = 94/383 (24%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142
           +  + GH   +              T   DG +  +       K     R +   G    
Sbjct: 153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY--QGPPFKFSASDRTHHKQGSFVR 210

Query: 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHD 199
            V F+ ++   V+     +       G ++ I       G+    +          +   
Sbjct: 211 DVEFSPDSGEFVI-----TV------GSDRKISCFDGKSGEFLKYIED------DQEPVQ 253

Query: 200 KRAILTLFGASATY--GTADGSTIIASCSEGTDISIWHGKTGKLLG--NVDTNQLKNNMA 255
                        +     D     A+      I +W   T K +    +D  QL N   
Sbjct: 254 ----------GGIFALSWLDSQKF-ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 302

Query: 256 AISPNG-RFLAAAAFTADVKVWEI---------------VY----------SKDGLVKAV 289
            +   G   + + +    +  +E+               +           S DG +   
Sbjct: 303 GVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEW 362

Query: 290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLL 349
           +S    + H + +  L  +    +  + S D TL+V  I       + PK          
Sbjct: 363 SSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQ-PKVA-------- 412

Query: 350 DSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409
                       S ++DG     T+   L  L   TG ++ +      G    ++     
Sbjct: 413 ------------SANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY-- 458

Query: 410 IPMGNQQVSVLATSSVDKKVKLW 432
                     L   +  +  KL 
Sbjct: 459 ------VAVGLEEGNTIQVFKLS 475

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 90.0 bits (224), Expect = 2e-19
 Identities = 22/258 (8%), Positives = 73/258 (28%), Gaps = 60/258 (23%)

Query: 83  DVNT-LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141
             ++  + H + +  L   S  +  ++   D  ++   ++  +             G  P
Sbjct: 363 SSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLK---VNGITKHE---------FGSQP 409

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKR 201
              +  ++  + V+   +          +   + +  G     +        +       
Sbjct: 410 KVASANNDGFTAVLTNDD----------DLLILQSFTGDIIKSVRL------NSPG---- 449

Query: 202 AILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNG 261
                  A +          +   +      +   +    L      +   +  +ISP+ 
Sbjct: 450 ------SAVSLSQNYVAVG-LEEGNTIQVFKLSDLEVSFDLKTPLRAKP--SYISISPSE 500

Query: 262 RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ-------- 313
            ++AA      + ++++   +   VK            S +  + + P  +         
Sbjct: 501 TYIAAGDVMGKILLYDL---QSREVKTSR----WAFRTSKINAISWKPAEKGANEEEIEE 553

Query: 314 --IITASKDGTLRVWNIN 329
             + T S D  + ++++ 
Sbjct: 554 DLVATGSLDTNIFIYSVK 571

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 81.9 bits (203), Expect = 8e-17
 Identities = 26/225 (11%), Positives = 67/225 (29%), Gaps = 39/225 (17%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA-AISPNGRFLAAAAFTADVKV 275
           +        ++   + I    TG ++ +V  N   + ++ + +     L         K+
Sbjct: 416 NDGFTAVLTNDDD-LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 474

Query: 276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLD 335
            +             S       ++  +++  +P+   I      G + ++         
Sbjct: 475 SD----------LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY--------- 515

Query: 336 EDPKTLKVLPIPLLDSNGA-------TLQYDRLSLSSDGKILA-ATHGSTLQWLSVETGK 387
            D ++ +V                    +        +  ++A  +  + +   SV+   
Sbjct: 516 -DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 574

Query: 388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            +  A  AH+  +  + W            S L +S  D  +K W
Sbjct: 575 KIIKALNAHKDGVNNLLWETP---------STLVSSGADACIKRW 610

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 78.0 bits (193), Expect = 1e-15
 Identities = 23/231 (9%), Positives = 65/231 (28%), Gaps = 40/231 (17%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN------NMAAISP--NGRFLAAAA 268
             + I   C +   +        K+       Q              SP    ++L +  
Sbjct: 29  TTNAIAYPCGKSAFVRCLDDGDSKV---PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD 85

Query: 269 FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS--KDGTLRVW 326
            +  V VW   + K+     V    + +     ++ + +     ++      +D      
Sbjct: 86  ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI 145

Query: 327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS---TLQWLSV 383
           + +          +L  +       +G + + +   L     + + T      ++ +   
Sbjct: 146 SWDSG-------NSLGEV-------SGHSQRINACHLKQSRPMRSMT-VGDDGSVVFYQG 190

Query: 384 ETGKVLDTAE--KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
              K   +          +  + ++P +   G      + T   D+K+  +
Sbjct: 191 PPFKFSASDRTHHKQGSFVRDVEFSPDS---GEF----VITVGSDRKISCF 234

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 73.0 bits (180), Expect = 5e-14
 Identities = 44/387 (11%), Positives = 102/387 (26%), Gaps = 111/387 (28%)

Query: 71  GDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLAT--ACADGVIRVHKLDDASSKSF 128
             +  +   +    +  +     ++ + +  +G+ L       D            S + 
Sbjct: 98  DKESNSVEVNVK--SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFG---VFISWDSGN- 151

Query: 129 KFLRINLPPG--GPPTAVAFA-DNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQ 182
               +    G      A           +              G++ ++        K  
Sbjct: 152 ---SLGEVSGHSQRINACHLKQSRPMRSMTV------------GDDGSVVFYQGPPFKFS 196

Query: 183 SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242
           +           H                 + + D    + +      IS + GK+G+ L
Sbjct: 197 ASDRT-------HHKQGSFVR------DVEF-SPDSGEFVITVGSDRKISCFDGKSGEFL 242

Query: 243 GNVDTNQLKNNMAAISP---NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299
             ++ +Q        +    + +  A     A ++VW++                L   +
Sbjct: 243 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV---TTS---KCVQKWTLDKQQ 296

Query: 300 SAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL-------------P 345
                +      + +II+ S DGTL  + +          + LK +             P
Sbjct: 297 LGNQQVGVVATGNGRIISLSLDGTLNFYEL-------GHDEVLKTISGHNKGITALTVNP 349

Query: 346 IPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAW 405
           +              +S S DG+I        ++W S  +        + H   I  +  
Sbjct: 350 L--------------ISGSYDGRI--------MEW-SSSSM------HQDHSNLIVSLDN 380

Query: 406 APKTIPMGNQQVSVLATSSVDKKVKLW 432
           +              ++ S D  +K+ 
Sbjct: 381 SKAQE---------YSSISWDDTLKVN 398

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 27/188 (14%)

Query: 256 AISPNGRFLA-AAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW-LCFAP--NS 311
           +  P    +A     +A V+  +   SK   V       Q  GH S+V   + F+P   S
Sbjct: 25  SYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVV------QFTGHGSSVVTTVKFSPIKGS 78

Query: 312 EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371
           + + +  + G + VW        +     +K     L            +S   +G+ L 
Sbjct: 79  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD------ISWDFEGRRLC 132

Query: 372 ATHGS---TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK 428
                      ++S ++G  L      H   I               +     T   D  
Sbjct: 133 VVGEGRDNFGVFISWDSGNSLGEVS-GHSQRINACHLKQS----RPMRS---MTVGDDGS 184

Query: 429 VKLWLAPS 436
           V  +  P 
Sbjct: 185 VVFYQGPP 192

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 29/250 (11%), Positives = 63/250 (25%), Gaps = 82/250 (32%)

Query: 84  VNTLKGHGD-SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142
           + +++ +   S   L  +     L       V +   L D          +  P    P+
Sbjct: 440 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFK---LSDLEVS----FDLKTPLRAKPS 492

Query: 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRA 202
            ++ + + T I           + +Y           + ++       +W          
Sbjct: 493 YISISPSETYIAAGDVM---GKILLY------DLQSREVKTS------RWAFR----TSK 533

Query: 203 ILTL----FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAIS 258
           I  +        A     +    +A+ S  T+I I+  K    +                
Sbjct: 534 INAISWKPAEKGANEEEIEEDL-VATGSLDTNIFIYSVKRPMKIIKA------------- 579

Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
                                               L  HK  V  L +   S  ++++ 
Sbjct: 580 ------------------------------------LNAHKDGVNNLLWETPS-TLVSSG 602

Query: 319 KDGTLRVWNI 328
            D  ++ WN+
Sbjct: 603 ADACIKRWNV 612

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 19/151 (12%), Positives = 39/151 (25%), Gaps = 32/151 (21%)

Query: 297 GHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPI-PLLDSNGA 354
             ++  T L + P +  I     K   +R            D    KV P+        +
Sbjct: 16  TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCL----------DDGDSKVPPVVQFTGHGSS 65

Query: 355 TLQYDRLSLSSDGKILA-ATHGSTLQ-WLSVETGKVLDTAE-------KAHEGEITCMAW 405
            +   + S     + L        +  W      K  ++ E       +   G I+ ++W
Sbjct: 66  VVTTVKFSPIKGSQYLCSGDESGKVIVW-GWTFDKESNSVEVNVKSEFQVLAGPISDISW 124

Query: 406 AP--KTIPMGNQQVSVLATSSVDKKVKLWLA 434
               + +         +     D        
Sbjct: 125 DFEGRRL--------CVVGEGRDNFGVFISW 147

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score =  103 bits (260), Expect = 6e-25
 Identities = 68/381 (17%), Positives = 126/381 (33%), Gaps = 89/381 (23%)

Query: 84  VNTLKGHGDS-VTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GP 140
           +  +  H DS    L ++  G  LA+   D  I   ++      S+    + L  G    
Sbjct: 8   LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI---RIWGTEGDSWICKSV-LSEGHQRT 63

Query: 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI-----STNEGKQQSKLPGPEIKWEH- 194
              VA++     +       S         +        + ++ +  + L G      H 
Sbjct: 64  VRKVAWSPCGNYLA------SA------SFDATTCIWKKNQDDFECVTTLEG------HE 105

Query: 195 HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-- 252
           ++V            S  +    G+ + A+CS    + +W          V    L +  
Sbjct: 106 NEVK-----------SVAW-APSGNLL-ATCSRDKSVWVWEVDEEDEYECVSV--LNSHT 150

Query: 253 ---NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP 309
                    P+   LA+A++   VK++      D +  A      L+GH+S V  L F P
Sbjct: 151 QDVKHVVWHPSQELLASASYDDTVKLYR-EEEDDWVCCAT-----LEGHESTVWSLAFDP 204

Query: 310 NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNG---ATLQYDR------ 360
           + +++ + S D T+R+W   +  +          +     D +     TL          
Sbjct: 205 SGQRLASCSDDRTVRIWRQYLPGNEQG-------VACSGSDPSWKCICTLSGFHSRTIYD 257

Query: 361 LSLSSDGKILAATHG---------STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
           ++       LA   G                  T  +     +AH  ++ C+AW PK   
Sbjct: 258 IAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK--- 314

Query: 412 MGNQQVSVLATSSVDKKVKLW 432
               +  +LA+ S D +V  W
Sbjct: 315 ----EPGLLASCSDDGEVAFW 331

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 19/131 (14%)

Query: 217 DGSTIIASCSEGTDISIW------HGKTGKLLGNVDTNQLKNNMA----------AISPN 260
            G  + ASCS+   + IW      + +     G+  + +    ++          A    
Sbjct: 205 SGQRL-ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263

Query: 261 GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ-LKGHKSAVTWLCFAPNSEQII-TAS 318
              LA A     ++V++   + D      +      + H   V  + + P    ++ + S
Sbjct: 264 TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323

Query: 319 KDGTLRVWNIN 329
            DG +  W   
Sbjct: 324 DDGEVAFWKYQ 334

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 70  HGDKDQNKRHHPLDVNTLKGHGDSVTGLCFS-SDGKCLATACADGVIRV 117
             + D  +    L  +  + H   V  + ++  +   LA+   DG +  
Sbjct: 282 DPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score =  103 bits (258), Expect = 3e-24
 Identities = 54/390 (13%), Positives = 124/390 (31%), Gaps = 93/390 (23%)

Query: 84  VNTLKGHGDSVTGLCFS-SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP- 141
            +  + HG  +  L     +G+ + +  +DGVI ++ L+++S +S+   +     G    
Sbjct: 36  RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP 95

Query: 142 -------TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEH 194
                    V +  + T +       S         +K +         K+      W+ 
Sbjct: 96  DVHRYSVETVQWYPHDTGMFT-----SS------SFDKTL---------KV------WD- 128

Query: 195 HKVHDKRAILTLFGASATYGTA---DGST--IIASCSEGTDISIWHGKTGKLL------- 242
              +  +           Y        +   ++A  + G  + +   K+G          
Sbjct: 129 --TNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR 186

Query: 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTAD--VKVW------EIVYSKDGLVKAVTSVMQ 294
             +          + SP   ++ A A +AD  VK+W        + + D      +  ++
Sbjct: 187 QEILA-------VSWSPRYDYILATA-SADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238

Query: 295 --LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
                H   V  LCF  +   ++T   D  +R+W          +    +   +      
Sbjct: 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW----------NSSNGENTLVNYGKVC 288

Query: 353 GATLQYDRLSLSS-DGKILA-ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP--K 408
             + +  + ++S           +GST+   +V +G+ +   +  H   + C  +    +
Sbjct: 289 NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-GHYKTVDCCVFQSNFQ 347

Query: 409 TIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438
            +           + S D  +  W+    E
Sbjct: 348 EL----------YSGSRDCNILAWVPSLYE 367

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 33/265 (12%), Positives = 74/265 (27%), Gaps = 62/265 (23%)

Query: 84  VNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP- 141
            + L+GH   +  + +S      LATA AD  +++  +  AS       + N        
Sbjct: 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238

Query: 142 ----------TAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGP 188
                       + F  +   ++      +       G +  +   +++ G+      G 
Sbjct: 239 SANTAHNGKVNGLCFTSDGLHLL------TV------GTDNRMRLWNSSNGENTLVNYGK 286

Query: 189 EIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN 248
                   +              T      S        G+ I+++   +G+ +      
Sbjct: 287 VCNNSKKGL------------KFTVSCGCSSEF-VFVPYGSTIAVYTVYSGEQITM---- 329

Query: 249 QLKN-----NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT 303
            LK      +      N + L + +   ++  W             +    +       T
Sbjct: 330 -LKGHYKTVDCCVFQSNFQELYSGSRDCNILAWV-----------PSLYEPVPDDDETTT 377

Query: 304 WLCFAPNSEQIITASKD-GTLRVWN 327
                P  E   ++S + G    W+
Sbjct: 378 KSQLNPAFEDAWSSSDEEGGTSAWS 402

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 75.0 bits (185), Expect = 8e-15
 Identities = 38/312 (12%), Positives = 81/312 (25%), Gaps = 73/312 (23%)

Query: 83  DVNT-----LKGHGDSVTGLCFSSDGK---CLATACADGVIRVHKLDDASSKSFKFLRIN 134
           D NT     +    ++V     S        +A       +++   D  S      L+  
Sbjct: 128 DTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL--CDLKSGSCSHILQ-- 183

Query: 135 LPPG--GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPE 189
              G      AV+++     I+      +         +  +                  
Sbjct: 184 ---GHRQEILAVSWSPRYDYILA-----TA------SADSRVKLWDVRRASGCLITL--- 226

Query: 190 IKWEHHKVHDKRAILTLFG-----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLL-- 242
              +H+    +                 + T+DG   + +      + +W+   G+    
Sbjct: 227 --DQHNGKKSQAVESANTAHNGKVNGLCF-TSDGLH-LLTVGTDNRMRLWNSSNGENTLV 282

Query: 243 --GNVDTNQLKN-NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299
             G V  N  K                  + + + V+ +     G       +  LKGH 
Sbjct: 283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV---YSG-----EQITMLKGHY 334

Query: 300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD 359
             V    F  N +++ + S+D  +  W           P   + +P              
Sbjct: 335 KTVDCCVFQSNFQELYSGSRDCNILAW----------VPSLYEPVP-------DDDETTT 377

Query: 360 RLSLSSDGKILA 371
           +  L+   +   
Sbjct: 378 KSQLNPAFEDAW 389

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 74.6 bits (184), Expect = 8e-15
 Identities = 42/242 (17%), Positives = 81/242 (33%), Gaps = 61/242 (25%)

Query: 215 TADGSTIIASCSEGTDISIWHGKTGKLL-------GNVDTNQLKNNMAAISP-NGRFLAA 266
           T     +    +E T   +   +  K         G +       N   I P  GR++ +
Sbjct: 10  TGLEDPLRLRRAEST-RRVLGLELNKDRDVERIHGGGI-------NTLDIEPVEGRYMLS 61

Query: 267 AAFTAD--VKVW-----EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN-SEQIITAS 318
               +D  + ++                          H+ +V  + + P+ +    ++S
Sbjct: 62  GG--SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119

Query: 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR----LSLSSDGK----IL 370
            D TL+VW          D  TL+               ++       +S        + 
Sbjct: 120 FDKTLKVW----------DTNTLQTAD---------VFNFEETVYSHHMSPVSTKHCLVA 160

Query: 371 AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK 430
             T G  +Q   +++G      +  H  EI  ++W+P+     +    +LAT+S D +VK
Sbjct: 161 VGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPR----YDY---ILATASADSRVK 212

Query: 431 LW 432
           LW
Sbjct: 213 LW 214

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 29/137 (21%)

Query: 307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLK-----VLPIPLLDSNGATLQYDRL 361
                + +     + T RV  +     L++D    +     +  + +    G  +    L
Sbjct: 9   QTGLEDPLRLRRAESTRRVLGL----ELNKDRDVERIHGGGINTLDIEPVEGRYM----L 60

Query: 362 SLSSDGKIL---AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP---KTIPMGNQ 415
           S  SDG I+            +       +       H   +  + W P           
Sbjct: 61  SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF----- 115

Query: 416 QVSVLATSSVDKKVKLW 432
                 +SS DK +K+W
Sbjct: 116 -----TSSSFDKTLKVW 127

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  101 bits (254), Expect = 9e-24
 Identities = 68/388 (17%), Positives = 143/388 (36%), Gaps = 96/388 (24%)

Query: 83  DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV---------HKLDDASSKSFKFLRI 133
           +++    H   V  + FS+DG+ LAT C +   +V          +L D S+ +     +
Sbjct: 56  ELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL 114

Query: 134 NLPPGGPPT----AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPE 189
           N            +V F+ +   +       +G       E++ I         ++    
Sbjct: 115 NTSSSPSSDLYIRSVCFSPDGKFLA------TG------AEDRLI---------RI---- 149

Query: 190 IKWEHHKVHDKRAILTLFGASAT-YGTA---DGSTIIASCSEGTDISIWHGKTGKLL--- 242
             W+   + +++ ++ L G     Y       G  +  S S    + IW  +TG+     
Sbjct: 150 --WD---IENRKIVMILQGHEQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLTL 203

Query: 243 ---GNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298
                V T        A+SP +G+++AA +    V+VW+   +   + +  +      GH
Sbjct: 204 SIEDGVTT-------VAVSPGDGKYIAAGSLDRAVRVWD-SETGFLVERLDSENESGTGH 255

Query: 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY 358
           K +V  + F  + + +++ S D ++++WN+          +           ++G     
Sbjct: 256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNL----------QNANNKSDSKTPNSGTCEVT 305

Query: 359 DR--------LSLSSDGKILAATHGS---TLQ-WLSVETGKVLDTAEKAHEGEITCMAWA 406
                     ++ + + + + +  GS    +  W   ++G  L   +  H   +  +A A
Sbjct: 306 YIGHKDFVLSVATTQNDEYILS--GSKDRGVLFW-DKKSGNPLLMLQ-GHRNSVISVAVA 361

Query: 407 PKTI--PMGNQQVSVLATSSVDKKVKLW 432
             +   P  N      AT S D K ++W
Sbjct: 362 NGSSLGPEYNV----FATGSGDCKARIW 385

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 95.0 bits (237), Expect = 1e-21
 Identities = 64/371 (17%), Positives = 131/371 (35%), Gaps = 107/371 (28%)

Query: 79  HHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG 138
           H+ +  N    H   +       D + +  A        + L + +      + ++    
Sbjct: 3   HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLD 62

Query: 139 --GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
                  V F+++   +       +GC        K           ++      +    
Sbjct: 63  HTSVVCCVKFSNDGEYLA------TGC-------NKTT---------QV------YR--- 91

Query: 197 VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAA 256
           V D   +  L   SA     D   +  S S  +D+ I                       
Sbjct: 92  VSDGSLVARLSDDSA--ANKDPENLNTSSSPSSDLYIRS-------------------VC 130

Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
            SP+G+FLA  A    +++W+I   ++        VM L+GH+  +  L + P+ +++++
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDI---ENR-----KIVMILQGHEQDIYSLDYFPSGDKLVS 182

Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS---SDGKILAAT 373
            S D T+R+W++          +    L I     +G T      +++    DGK +AA 
Sbjct: 183 GSGDRTVRIWDL-------RTGQCSLTLSI----EDGVT------TVAVSPGDGKYIAA- 224

Query: 374 HGS---TLQ-WLSVETGKVLDTAEKA------HEGEITCMAWAP--KTIPMGNQQVSVLA 421
            GS    ++ W   ETG +++  +        H+  +  + +    +++           
Sbjct: 225 -GSLDRAVRVW-DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV----------V 272

Query: 422 TSSVDKKVKLW 432
           + S+D+ VKLW
Sbjct: 273 SGSLDRSVKLW 283

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 73.0 bits (180), Expect = 3e-14
 Identities = 45/267 (16%), Positives = 86/267 (32%), Gaps = 59/267 (22%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
           V  L+GH   +  L +   G  L +   D  +R+   D  + +    L I        T 
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI--WDLRTGQCSLTLSIE----DGVTT 211

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDK 200
           VA +      +      +G        ++A+    +  G    +L         HK    
Sbjct: 212 VAVSPGDGKYIA-----AG------SLDRAVRVWDSETGFLVERLDSENESGTGHK---- 256

Query: 201 RAILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA---- 255
            ++ ++ F       T DG ++  S S    + +W+ +      +  T            
Sbjct: 257 DSVYSVVF-------TRDGQSV-VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 308

Query: 256 --------AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
                   A + N  ++ + +    V  W+    K G       ++ L+GH+++V  +  
Sbjct: 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDK---KSG-----NPLLMLQGHRNSVISVAV 360

Query: 308 ------APNSEQIITASKDGTLRVWNI 328
                  P      T S D   R+W  
Sbjct: 361 ANGSSLGPEYNVFATGSGDCKARIWKY 387

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score =  101 bits (253), Expect = 9e-24
 Identities = 51/413 (12%), Positives = 115/413 (27%), Gaps = 124/413 (30%)

Query: 66  HSHSHGDK--DQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV------ 117
           H HS G+    Q      +    L GH   +T + ++ +G  L +   D    V      
Sbjct: 8   HHHSSGENLYFQGSHMKAI---KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG 64

Query: 118 --------HKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG 169
                   H                    G   ++         V      +G       
Sbjct: 65  ERLGTLDGHT-------------------GTIWSIDVDCFTKYCV------TG------S 93

Query: 170 EEKAI---STNEGKQQSKLPGPEIKWEHHKV------HDKRAILTLFGASATYGTADGST 220
            + +I     + G+  +             V            L             GS 
Sbjct: 94  ADYSIKLWDVSNGQCVATWKS------PVPVKRVEFSPCGNYFLA---ILDNVMKNPGSI 144

Query: 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKN--NMAAISPNGRFLAAAAFTADVKVWEI 278
            I      +        + + +  + T++  +   +A  S  G+++ A      +  +++
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDV 204

Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
               +      +    +  H+ +++ + F+P+    IT+S+D    +           D 
Sbjct: 205 ---SNNYEYVDS----IDLHEKSISDMQFSPDLTYFITSSRDTNSFLV----------DV 247

Query: 339 KTLKVLPIPLLDSNGATLQYDR----LSLSSDGKILAATHGSTLQWLS------------ 382
            TL+VL            + D       ++   + +    G   + ++            
Sbjct: 248 STLQVL---------KKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298

Query: 383 ---VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
                  + +    + H G +  +A +P+    G       A+   D  ++L 
Sbjct: 299 FYHKIFEEEIGRV-QGHFGPLNTVAISPQ----GTS----YASGGEDGFIRLH 342

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 87.7 bits (218), Expect = 3e-19
 Identities = 42/235 (17%), Positives = 78/235 (33%), Gaps = 39/235 (16%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD--VK 274
           +G  +  SCS+ +  S+W+   G+ LG +D +        +    ++    +  AD  +K
Sbjct: 43  EGDLL-FSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGS--ADYSIK 99

Query: 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-----KDGTLRVWNIN 329
           +W++    +G       V   K     V  + F+P     +          G++ ++ I 
Sbjct: 100 LWDV---SNG-----QCVATWKSP-VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150

Query: 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDR---LSLSSDGKILAATHG-STLQWLSVET 385
                D     L  +    +         D       S+ GK + A H    +    V  
Sbjct: 151 R----DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206

Query: 386 GKVLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438
                 +   HE  I+ M ++P                TSS D    L    +L+
Sbjct: 207 NYEYVDSIDLHEKSISDMQFSPDLTYF----------ITSSRDTNSFLVDVSTLQ 251

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 38/276 (13%), Positives = 80/276 (28%), Gaps = 71/276 (25%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATAC-----ADGVIRV---------HKLDDASSKSFK 129
           V T K     V  + FS  G              G I +         H+L   S +   
Sbjct: 109 VATWKSP-VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH 167

Query: 130 FLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS---TNEGKQQSK-L 185
            +  +       T   ++     I+      +G       ++  IS    +   +    +
Sbjct: 168 KIITH-EGLDAATVAGWSTKGKYII------AGH------KDGKISKYDVSNNYEYVDSI 214

Query: 186 PGPEIKWEHHKVHDKRAILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG- 243
                       H+K +I  + F       + D +    + S  T+  +    T ++L  
Sbjct: 215 DL----------HEK-SISDMQF-------SPDLTYF-ITSSRDTNSFLVDVSTLQVLKK 255

Query: 244 -----NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVY-SKDGLVK---AVT--SV 292
                 +       N A I+P   F+          V            +    +    +
Sbjct: 256 YETDCPL-------NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308

Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
            +++GH   +  +  +P      +  +DG +R+ + 
Sbjct: 309 GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF 344

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 30/240 (12%), Positives = 63/240 (26%), Gaps = 65/240 (27%)

Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
            +        +  +++   +      +      L       +  G  L + +  +   VW
Sbjct: 2   GSSHHHHHHSSGENLYFQGSHMKAIKLTGHERPL--TQVKYNKEGDLLFSCSKDSSASVW 59

Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
              YS +G       +  L GH   +  +     ++  +T S D ++++W          
Sbjct: 60  ---YSLNG-----ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW---------- 101

Query: 337 DPKTLKVLPIPLLDSNGATLQYD----RLSLSSDGKILA------ATHGSTLQWLSVETG 386
           D    + +         AT +      R+  S  G            +  ++    +E  
Sbjct: 102 DVSNGQCV---------ATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152

Query: 387 KVLDTAEKAHEGE------------ITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
                  K  E               T   W+   K I               D K+  +
Sbjct: 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI----------IAGHKDGKISKY 202

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 49.9 bits (120), Expect = 9e-07
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLD 121
           +  ++GH   +  +  S  G   A+   DG IR+H  +
Sbjct: 308 IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
           V+++  H  S++ + FS D     T+  D    +         + + L+       P   
Sbjct: 211 VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV-----DVSTLQVLKK-YETDCPLNT 264

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
                    I++              +    S NEGK +++       +       +  I
Sbjct: 265 AVITPLKEFIILG-------GGQEAKDVTTTSANEGKFEARF------YH---KIFEEEI 308

Query: 204 LTLFG-ASATYGTA---DGSTIIASCSE-GTDISIWHGKTGKLLGNVDT 247
             + G        A    G++  AS  E G  I + H +        D 
Sbjct: 309 GRVQGHFGPLNTVAISPQGTS-YASGGEDGF-IRLHHFEKSYFDFKYDV 355

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 99.8 bits (250), Expect = 1e-23
 Identities = 59/367 (16%), Positives = 128/367 (34%), Gaps = 92/367 (25%)

Query: 84  VNTLKGHGDSVTGLCFSSDGK----CLATACADGVIRVHKLDDASSKSFKFLRINLPPG- 138
               + H D++  + + ++ K     + T   D +++V K  D        L      G 
Sbjct: 25  FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE-----GH 79

Query: 139 -GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEH 194
                +V  +             S         +  I       GKQ   +         
Sbjct: 80  QLGVVSVDISHTLPIAA------SS------SLDAHIRLWDLENGKQIKSIDA------- 120

Query: 195 HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM 254
                  A    F       + D   + A+ +    ++I+  ++GK   ++DT       
Sbjct: 121 ---GPVDAWTLAF-------SPDSQYL-ATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169

Query: 255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314
            A SP+G++LA+ A    + +++I     G       +  L+GH   +  L F+P+S+ +
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDI---ATG-----KLLHTLEGHAMPIRSLTFSPDSQLL 221

Query: 315 ITASKDGTLRVWNINVRYHLDEDPKTLK-----VLPIPLLDSNGATLQYDRLSLSSDGKI 369
           +TAS DG ++++++           TL      VL +               +   D   
Sbjct: 222 VTASDDGYIKIYDVQHANLA----GTLSGHASWVLNV---------------AFCPDDTH 262

Query: 370 LAATHGS---TLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV 425
             +   S   +++ W  V T   + T    H+ ++  + +       G++    + +   
Sbjct: 263 FVS--SSSDKSVKVW-DVGTRTCVHTFF-DHQDQVWGVKYNGN----GSK----IVSVGD 310

Query: 426 DKKVKLW 432
           D+++ ++
Sbjct: 311 DQEIHIY 317

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 65.9 bits (162), Expect = 4e-12
 Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
           D   +  + S+   I I+  +   L G +  +       A  P+     +++    VKVW
Sbjct: 217 DSQLL-VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 275

Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
           ++                   H+  V  + +  N  +I++   D  + +++ 
Sbjct: 276 DV---GTRTCVHT-----FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 40/168 (23%)

Query: 273 VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN----SEQIITASKDGTLRVWNI 328
                  Y             Q + H  A+  + +  N    SE ++T S D  ++VW  
Sbjct: 14  YFQGTNQYGI--------LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW 65

Query: 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQ-WLSVETG 386
                 DE       L        G  L    + +S    I A ++  + ++ W  +E G
Sbjct: 66  R-----DERLDLQWSL-------EGHQLGVVSVDISHTLPIAASSSLDAHIRLW-DLENG 112

Query: 387 KVLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
           K + + + A   +   +A++P  + +          AT +   KV ++
Sbjct: 113 KQIKSID-AGPVDAWTLAFSPDSQYL----------ATGTHVGKVNIF 149

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 14/77 (18%)

Query: 356 LQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQ 415
           + +     S +               + + G +    E+AH+  I  +AW          
Sbjct: 1   MHHHHHHSSREN---------LYFQGTNQYGILFKQ-EQAHDDAIWSVAWGTNKKENSET 50

Query: 416 QVSVLATSSVDKKVKLW 432
               + T S+D  VK+W
Sbjct: 51  ----VVTGSLDDLVKVW 63

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 98.4 bits (246), Expect = 6e-23
 Identities = 60/371 (16%), Positives = 128/371 (34%), Gaps = 96/371 (25%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPP 141
             TLKGHG+ V  + +  D + + ++  DG +    + D+ + +    + +         
Sbjct: 57  RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKV---IVWDSFTTN----KEHAVTMPCTWV 109

Query: 142 TAVAFADNATSIVVATHNLSG-----CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEH-H 195
            A A+A +  +I        G     CS+Y    +K  +     ++  +        H +
Sbjct: 110 MACAYAPSGCAIA------CGGLDNKCSVYPLTFDKNENM--AAKKKSVAM------HTN 155

Query: 196 KVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL-------GNVDTN 248
            +            + ++ T     I  + S     ++W  ++G+LL        +V   
Sbjct: 156 YLS-----------ACSF-TNSDMQI-LTASGDGTCALWDVESGQLLQSFHGHGADV--- 199

Query: 249 QLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC 306
                   ++P+  G    +        VW++   + G       V   + H+S V  + 
Sbjct: 200 ----LCLDLAPSETGNTFVSGGCDKKAMVWDM---RSG-----QCVQAFETHESDVNSVR 247

Query: 307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD 366
           + P+ +   + S D T R++          D +  + + I   +S         +  S  
Sbjct: 248 YYPSGDAFASGSDDATCRLY----------DLRADREVAIYSKESIIFGAS--SVDFSLS 295

Query: 367 GKILAATHGS---TLQWLSVETGKVLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLA 421
           G++L A  G    T+    V  G  +      HE  ++ +  +P                
Sbjct: 296 GRLLFA--GYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAF----------C 342

Query: 422 TSSVDKKVKLW 432
           + S D  +++W
Sbjct: 343 SGSWDHTLRVW 353

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 77.2 bits (191), Expect = 9e-16
 Identities = 28/230 (12%), Positives = 69/230 (30%), Gaps = 45/230 (19%)

Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM---------AAISPNGRFLAAAAF 269
             +    ++  D+ +               + +  +              + R + +++ 
Sbjct: 25  GKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQ 84

Query: 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
              V VW+                 +    + V    +AP+   I     D    V+ + 
Sbjct: 85  DGKVIVWDS---FTT-----NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136

Query: 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQ--YDRLS---LSSDGKILA-ATHGSTLQ-WLS 382
                 ++                 ++    + LS    ++    +  A+   T   W  
Sbjct: 137 FD----KNENMAAKK---------KSVAMHTNYLSACSFTNSDMQILTASGDGTCALW-D 182

Query: 383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           VE+G++L +    H  ++ C+  AP      ++  +   +   DKK  +W
Sbjct: 183 VESGQLLQSFH-GHGADVLCLDLAP------SETGNTFVSGGCDKKAMVW 225

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 71.8 bits (177), Expect = 6e-14
 Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 33/186 (17%)

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ-LKGHKSAVTWLCFAPNSEQI 314
           A S  G+     A   DV++ ++    + L + V    + LKGH + V  + +  +  +I
Sbjct: 20  AESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRI 79

Query: 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH 374
           +++S+DG + VW+            T K   + +  +      Y     +  G  +A   
Sbjct: 80  VSSSQDGKVIVWDSF---------TTNKEHAVTMPCTWVMACAY-----APSGCAIAC-- 123

Query: 375 GS---TLQWLSVETGKVLDTAE-----KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426
           G          +   K  + A        H   ++  ++         Q    + T+S D
Sbjct: 124 GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS----DMQ----ILTASGD 175

Query: 427 KKVKLW 432
               LW
Sbjct: 176 GTCALW 181

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 49.9 bits (120), Expect = 8e-07
 Identities = 18/147 (12%), Positives = 45/147 (30%), Gaps = 22/147 (14%)

Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
           M   G     T       +E +    ++   ++ ++ +   + E  + L    +      
Sbjct: 2   MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELH-QVAERVEALGQFVMKTR--- 57

Query: 353 GATLQ--YDR---LSLSSDGKILA-ATHGSTLQ-WLSVETGKVLDTAEKAHEGEITCMAW 405
             TL+   ++   +    D + +  ++    +  W    T              +   A+
Sbjct: 58  -RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVW-DSFTTNKEHAVT-MPCTWVMACAY 114

Query: 406 APKTIPMGNQQVSVLATSSVDKKVKLW 432
           AP     G      +A   +D K  ++
Sbjct: 115 APS----GCA----IACGGLDNKCSVY 133

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 96.9 bits (242), Expect = 2e-22
 Identities = 52/418 (12%), Positives = 116/418 (27%), Gaps = 122/418 (29%)

Query: 88  KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPPTAVA 145
               + ++   ++ D   +A    +  + +++           L+        G  T V 
Sbjct: 5   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-----EHNGQVTGVD 59

Query: 146 FADNATSIVVATHNLSG---CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRA 202
           +A ++  IV      +     + Y++     +     K    +             ++ A
Sbjct: 60  WAPDSNRIV------TCGTDRNAYVW----TLKGRTWKPTLVILR----------INRAA 99

Query: 203 ILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN------NMAA 256
                     +   +     A  S    ISI + +            +K           
Sbjct: 100 R------CVRW-APNEKK-FAVGSGSRVISICYFEQENDWWVC--KHIKKPIRSTVLSLD 149

Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS-----------VMQLKGHKSAVTWL 305
             PN   LAA +     +++   Y K+   +   +           + +       V  +
Sbjct: 150 WHPNSVLLAAGSCDFKCRIFS-AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV 208

Query: 306 CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365
           CF+ N  ++   S D T+ + +        +    +  L          TL    ++  +
Sbjct: 209 CFSANGSRVAWVSHDSTVCLADA-------DKKMAVATL-------ASETLPLLAVTFIT 254

Query: 366 DGKILAATH-------------------------------------------GSTLQWLS 382
           +  ++AA H                                                  S
Sbjct: 255 ESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS 314

Query: 383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLESS 440
              G  LD+    H+  ++ ++        G  + S   T+ +D  + +W   SLES+
Sbjct: 315 AAAGAGLDS---LHKNSVSQISVLSG----GKAKCSQFCTTGMDGGMSIWDVRSLESA 365

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 34/261 (13%), Positives = 64/261 (24%), Gaps = 83/261 (31%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
           +         V G+CFS++G  +A    D  + +   D     +   L        P  A
Sbjct: 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL--ADADKKMAVATLA---SETLPLLA 249

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           V F   ++ +         C           + +    +    G         V  + + 
Sbjct: 250 VTFITESSLVAAG----HDCFP------VLFTYDSAAGKLSFGG------RLDVPKQSSQ 293

Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
                          +       +    S      G  L ++  N               
Sbjct: 294 -----------RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS-------------- 328

Query: 264 LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323
                      V +I     G              K+  +         Q  T   DG +
Sbjct: 329 -----------VSQISVLSGG--------------KAKCS---------QFCTTGMDGGM 354

Query: 324 RVWNINVRYHLDEDPKTLKVL 344
            +W++     L+   K LK++
Sbjct: 355 SIWDVRS---LESALKDLKIV 372

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
             K    +V  L +  +   LA    D   R+
Sbjct: 137 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK-SFKFLRINLPPGGPPT 142
           V+ LK H   VTG+ ++ D   + T   D    V  L   + K +   LRIN        
Sbjct: 45  VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN----RAAR 100

Query: 143 AVAFADNATSIVVA 156
            V +A N     V 
Sbjct: 101 CVRWAPNEKKFAVG 114

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 97.0 bits (242), Expect = 4e-22
 Identities = 48/385 (12%), Positives = 107/385 (27%), Gaps = 74/385 (19%)

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
           +  +   +         RH      +     + VT L +S DG  + T   +G +R   L
Sbjct: 78  TDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR---L 134

Query: 121 DDASSKSFKFLRINLPPG--GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---S 175
            + +      L          P  +V +  + T I+      S         E      +
Sbjct: 135 WNKTGALLNVLN-----FHRAPIVSVKWNKDGTHII------SM------DVENVTILWN 177

Query: 176 TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA----DGSTIIASCSEGTDI 231
              G                +               + G      D    +    +G  I
Sbjct: 178 VISGTVMQHFEL-------KETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGA-I 229

Query: 232 SIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS 291
            ++        G +  +    ++   +   + L +A+    +++W      +G      S
Sbjct: 230 FVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG---GNG-----NS 281

Query: 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS 351
                GH  ++    +  +  ++I+ S DG++R+W++       +    L +        
Sbjct: 282 QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL-------KQNTLLALS------- 326

Query: 352 NGATLQYDRLSLSSDGKILAATHGS---TLQ-WLSVETGKVLDTAEKAHEGEITCMAWAP 407
               +      +S DG+  A         +  +  ++       +   +   I      P
Sbjct: 327 IVDGVPIFAGRISQDGQKYAV--AFMDGQVNVY-DLKKLNSKSRSLYGNRDGILNPLPIP 383

Query: 408 KTIPMGNQQVSVLATSSVDKKVKLW 432
                     S  ++   D    L 
Sbjct: 384 ---LYA----SYQSSQDNDYIFDLS 401

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 93.5 bits (233), Expect = 7e-21
 Identities = 43/329 (13%), Positives = 99/329 (30%), Gaps = 54/329 (16%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
           +N L  H   +  + ++ DG  + +   + V  +   +  S    +   +    G    A
Sbjct: 142 LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTIL--WNVISGTVMQHFELKETGGSSINA 199

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
              + +  S+ V    +      + G + AI          +      ++   + +K   
Sbjct: 200 ENHSGD-GSLGVDVEWVDDDKFVIPGPKGAI---------FV------YQ---ITEKTPT 240

Query: 204 LTLFG-----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAIS 258
             L G     +   +       +  S S+   + IWHG  G        +      A+  
Sbjct: 241 GKLIGHHGPISVLEF-NDTNKLL-LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV 298

Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
            + + + + +    V++W +   K   + A+            +     + + ++   A 
Sbjct: 299 GDDK-VISCSMDGSVRLWSL---KQNTLLAL-----SIVDGVPIFAGRISQDGQKYAVAF 349

Query: 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGST- 377
            DG + V+          D K L      L  +       + L +       ++      
Sbjct: 350 MDGQVNVY----------DLKKLNSKSRSLYGNRDGI--LNPLPIPLYASYQSSQDNDYI 397

Query: 378 --LQWLSVETGKVLDTAEKAHEGEITCMA 404
             L W +    K+        EG +  + 
Sbjct: 398 FDLSW-NCAGNKISVAYS-LQEGSVVAIP 424

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 26/243 (10%), Positives = 65/243 (26%), Gaps = 51/243 (20%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA--------------------A 256
              +I+A   + +   +         G                                A
Sbjct: 56  LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA 115

Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
            S +G  +       ++++W    +K G       +  L  H++ +  + +  +   II+
Sbjct: 116 WSHDGNSIVTGVENGELRLW----NKTG-----ALLNVLNFHRAPIVSVKWNKDGTHIIS 166

Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD-----RLSLSSDGKILA 371
              +    +WN+          +  ++        N      D      +    D K + 
Sbjct: 167 MDVENVTILWNVISG----TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVI 222

Query: 372 ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKV 429
                 +    +            H G I+ + +    K +           ++S D  +
Sbjct: 223 PGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLL----------LSASDDGTL 271

Query: 430 KLW 432
           ++W
Sbjct: 272 RIW 274

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 33/178 (18%), Positives = 54/178 (30%), Gaps = 28/178 (15%)

Query: 266 AAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLR 324
                 D    +     DG VK    +++       +    + P  E I+    K+   R
Sbjct: 16  RETQEDDTNSIDSSDDLDGFVK----ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVAR 71

Query: 325 VWNIN------VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS-- 376
           +  I        +Y        L+        S   T Q   L+ S DG  +    G   
Sbjct: 72  LARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT--GVEN 129

Query: 377 -TLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             L+ W   +TG +L+     H   I  + W       G      + +  V+    LW
Sbjct: 130 GELRLW--NKTGALLNVLNF-HRAPIVSVKWNKD----GTH----IISMDVENVTILW 176

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 95.6 bits (239), Expect = 5e-22
 Identities = 59/376 (15%), Positives = 104/376 (27%), Gaps = 114/376 (30%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG---P 140
           +NTL  HG+ V  +  S+  + + T     V    K+ D S    K     L        
Sbjct: 45  INTL-NHGEVVCAVTISNPTRHVYTGGKGCV----KVWDISHPGNKSPVSQLDCLNRDNY 99

Query: 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI-----STNEGKQQSKLPGPEIKWEHH 195
             +     +  +++V             GE   +     +    + +++L          
Sbjct: 100 IRSCKLLPDGCTLIVG------------GEASTLSIWDLAAPTPRIKAELTS-------- 139

Query: 196 KVHDKRAILTLFGASATYGTA---DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN 252
                          A Y  A   D      SC    +I++W      L+      Q + 
Sbjct: 140 --SA----------PACYALAISPDSKVC-FSCCSDGNIAVWDLHNQTLVR-----QFQG 181

Query: 253 -----NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
                +   IS +G  L        V+ W++   ++G        +Q     S +  L +
Sbjct: 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDL---REG------RQLQQHDFTSQIFSLGY 232

Query: 308 APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLK-----VLPIPLLDSNGATLQYDRLS 362
            P  E +    +   + V ++N       D   L      VL                L 
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVN-----KPDKYQLHLHESCVLS---------------LK 272

Query: 363 LSSDGKILAATHGS---TLQ-WLSVETGKVLDTAEKAHEGEITCMAWAP--KTIPMGNQQ 416
            +  GK   +        L  W     G  +          +     +   K I      
Sbjct: 273 FAYCGKWFVS--TGKDNLLNAW-RTPYGASIFQ--SKESSSVLSCDISVDDKYI------ 321

Query: 417 VSVLATSSVDKKVKLW 432
                T S DKK  ++
Sbjct: 322 ----VTGSGDKKATVY 333

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 89.1 bits (222), Expect = 7e-20
 Identities = 42/263 (15%), Positives = 75/263 (28%), Gaps = 52/263 (19%)

Query: 72  DKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL 131
           D        P+         + +       DG  L        + +  L   + +    L
Sbjct: 78  DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

Query: 132 RINLPPG--GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLP 186
                        A+A + ++          S CS      +  I     +      +  
Sbjct: 138 T-----SSAPACYALAISPDSKVCF------SCCS------DGNIAVWDLHNQTLVRQFQ 180

Query: 187 GPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD 246
           G          H   A            + DG+ +  +      +  W  + G+ L   D
Sbjct: 181 G----------HTDGAS------CIDI-SNDGTKL-WTGGLDNTVRSWDLREGRQLQQHD 222

Query: 247 -TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305
            T+Q+        P G +LA    +++V+V  +               QL  H+S V  L
Sbjct: 223 FTSQI--FSLGYCPTGEWLAVGMESSNVEVLHV---NKPDK------YQLHLHESCVLSL 271

Query: 306 CFAPNSEQIITASKDGTLRVWNI 328
            FA   +  ++  KD  L  W  
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRT 294

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 86.8 bits (216), Expect = 5e-19
 Identities = 32/224 (14%), Positives = 68/224 (30%), Gaps = 39/224 (17%)

Query: 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD-VK 274
           ADG            I     +  + +  ++  ++      IS   R +         VK
Sbjct: 19  ADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCA-VTISNPTRHVYTGG--KGCVK 75

Query: 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHL 334
           VW+I        K+  S +      + +      P+   +I   +  TL +W++      
Sbjct: 76  VWDI---SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA----- 127

Query: 335 DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS---TLQ-WLSVETGKVLD 390
              P+    L         +      L++S D K+  +        +  W  +    ++ 
Sbjct: 128 APTPRIKAEL-------TSSAPACYALAISPDSKVCFS--CCSDGNIAVW-DLHNQTLVR 177

Query: 391 TAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
             +  H    +C+  +     +           T  +D  V+ W
Sbjct: 178 QFQ-GHTDGASCIDISNDGTKL----------WTGGLDNTVRSW 210

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 81.0 bits (201), Expect = 5e-17
 Identities = 52/361 (14%), Positives = 106/361 (29%), Gaps = 86/361 (23%)

Query: 87  LKGH--GDSVTGLCFSSDGKCLATAC-ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
            +G            ++DG+        D +I       A   +       L  G    A
Sbjct: 3   FQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT------LNHGEVVCA 56

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDK 200
           V  ++    +       +G        +  +     +    +S +   +     + +   
Sbjct: 57  VTISNPTRHVY------TGG-------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIR-- 101

Query: 201 RAILTLFGASATYGTADGSTIIASCSEGTDISIW--HGKTGKLLGNVDTNQLKNNMAAIS 258
                    S      DG T+     E + +SIW     T ++   + ++       AIS
Sbjct: 102 ---------SCKL-LPDGCTL-IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 150

Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
           P+ +   +     ++ VW++    +      T V Q +GH    + +  + +  ++ T  
Sbjct: 151 PDSKVCFSCCSDGNIAVWDL---HNQ-----TLVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR----LSLSSDGKILA-AT 373
            D T+R W          D +  + L             +      L     G+ LA   
Sbjct: 203 LDNTVRSW----------DLREGRQL---------QQHDFTSQIFSLGYCPTGEWLAVGM 243

Query: 374 HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKL 431
             S ++ L V            HE  +  + +A   K             ++  D  +  
Sbjct: 244 ESSNVEVLHVNKPDKYQL--HLHESCVLSLKFAYCGKWF----------VSTGKDNLLNA 291

Query: 432 W 432
           W
Sbjct: 292 W 292

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 13/234 (5%), Positives = 34/234 (14%), Gaps = 54/234 (23%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLL-------GNVDTNQLKNNMAAISPNGRFLAAAAF 269
                     +     I+    GK           +              +    +A  +
Sbjct: 36  FQMER--YVYKRRTDGIYIINLGKTWEKLQLAARVI-------VAIENPQDIIVQSARPY 86

Query: 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
                +      +        +      H           +  +                
Sbjct: 87  GQRAVLKFA---QYT-----GAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPI 138

Query: 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS---LSSDGKILAATHGS---TLQ-WLS 382
               L   P               +     R     + ++ K   +  G     L     
Sbjct: 139 KESALGNIPTIAFCDT-------DSP---MRYVDIGIPANNKGKQSI-GCLFWLLARM-V 186

Query: 383 VETGKVLDT----AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           ++    +                    A        +     A         + 
Sbjct: 187 LQMRGTILPGHKWDVMVDLFFYRDPEEAK---EQEEE----EAALVAPDYGAVA 233

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 10/161 (6%), Positives = 22/161 (13%), Gaps = 43/161 (26%)

Query: 282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTL 341
               +      +Q+                       K  T  ++               
Sbjct: 8   AARALSQREQDIQMMLAADVHLGTKNCDFQ-MERYVYKRRTDGIY----------IINLG 56

Query: 342 KVLPIPLLDSNGATLQ------YDRLSLSSDGKILAATHGS---TLQ-WLSVETGKVLDT 391
           K             LQ         +    D  + +A               +       
Sbjct: 57  KTW---------EKLQLAARVIVA-IENPQDIIVQSA--RPYGQRAVLK-FAQYTGAHAI 103

Query: 392 AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           A   H                 ++         +       
Sbjct: 104 AG-RHTPGTFTNQLQTS----FSE----PRLLILTDPRTDH 135

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 2/34 (5%), Positives = 7/34 (20%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
              L+     +  +    D    +         +
Sbjct: 59  WEKLQLAARVIVAIENPQDIIVQSARPYGQRAVL 92

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 4/42 (9%), Positives = 7/42 (16%), Gaps = 1/42 (2%)

Query: 77  KRHHPLDVNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRV 117
               P     +            +    +  A   A     V
Sbjct: 191 GTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAV 232

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 3/44 (6%), Positives = 10/44 (22%), Gaps = 1/44 (2%)

Query: 75  QNKRHHPLDVNTLKGHGDSVTGLCFSSDGKC-LATACADGVIRV 117
               + P               +   ++ K   +  C   ++  
Sbjct: 141 SALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLAR 184

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 91.7 bits (228), Expect = 1e-20
 Identities = 35/234 (14%), Positives = 80/234 (34%), Gaps = 41/234 (17%)

Query: 217 DGSTIIASCSEGTD---ISIWHGKTGKLLGNVDTNQLKN----NMAAISPNGRFLAAAAF 269
             +  +   +       I ++  + G L    +  + K        A S   R+LA   F
Sbjct: 29  CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88

Query: 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT------WLCFAPNSEQIITASKDGTL 323
             ++ +W +   +   +   +    +KGHK  +        L     + +I+T S+DGT+
Sbjct: 89  GGNLHIWNL---EAPEMPVYS----VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141

Query: 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL--SSDGKILAATHGS---TL 378
           +VW+                   P+   N             + + +++ A  G     +
Sbjct: 142 KVWDP-------RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA--GYDNGDI 192

Query: 379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           +   +    +    E   +  +  + +  K I M     + L  +S++ K  ++
Sbjct: 193 KLFDLRNMALR--WETNIKNGVCSLEFDRKDISM-----NKLVATSLEGKFHVF 239

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 77.8 bits (192), Expect = 6e-16
 Identities = 46/360 (12%), Positives = 96/360 (26%), Gaps = 88/360 (24%)

Query: 92  DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL----RINLPPGGPPTAVAFA 147
              T    S   + LAT    G + +  L+      +        IN   G     +   
Sbjct: 69  KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDG--IGGLGIG 126

Query: 148 DNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDKRAIL 204
           + A  IV      +G        +  +      +              E  +  +KR   
Sbjct: 127 EGAPEIV------TG------SRDGTVKVWDPRQKDDPVAN------MEPVQGENKRDCW 168

Query: 205 TLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD-TNQLKNNMAAISPNG-- 261
           T+  A       +    + +  +  DI ++  +   L    +  N + +           
Sbjct: 169 TV--AFGNAYNQEERV-VCAGYDNGDIKLFDLRNMALRWETNIKNGVCS--LEFDRKDIS 223

Query: 262 -RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-TASK 319
              L A +      V+++   +        + +  K HKS V  +   P + ++  TA  
Sbjct: 224 MNKLVATSLEGKFHVFDM---RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG 280

Query: 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ 379
            G L +W                                            +      ++
Sbjct: 281 AGGLHLWKY------------------------------------EYPIQRSKKDSEGIE 304

Query: 380 WLSVETGKVLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437
                +  +L          I+ + W+P  + +            SS D+ V++ +   L
Sbjct: 305 MGVAGSVSLLQNVT-LSTQPISSLDWSPDKRGL---------CVCSSFDQTVRVLIVTKL 354

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 23/146 (15%)

Query: 295 LKGHKSAVTWLCFAPNSEQIIT----ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLD 350
            KG    V    + P S + +T    A   G ++++          + +   +  +  ++
Sbjct: 14  QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLY----------EIQHGDLKLLREIE 63

Query: 351 SNGATLQYDRLSLSSDGKILA-ATHGSTLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPK 408
                      + S   + LA    G  L  W ++E  ++   + K H+  I  +     
Sbjct: 64  KAKPIKCGTFGATSLQQRYLATGDFGGNLHIW-NLEAPEMPVYSVKGHKEIINAIDGIGG 122

Query: 409 TI--PMGNQQVSVLATSSVDKKVKLW 432
                   +    + T S D  VK+W
Sbjct: 123 LGIGEGAPE----IVTGSRDGTVKVW 144

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 22/256 (8%), Positives = 68/256 (26%), Gaps = 75/256 (29%)

Query: 86  TLKGHGDS-----VTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP 140
            ++G           G  ++ + + +     +G I++    D  + +   LR        
Sbjct: 158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF---DLRNMA---LRWETNIKNG 211

Query: 141 PTAVAF-ADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKW--EHHKV 197
             ++ F   + +   +     +         E             +      +       
Sbjct: 212 VCSLEFDRKDISMNKLV----ATSL------EGKF---------HV------FDMRTQHP 246

Query: 198 HDKRAILTLFGASAT-YGTA---DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNN 253
               A ++     +T +          +  +      + +W  +        D+  ++  
Sbjct: 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM- 305

Query: 254 MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ 313
                                         G+  +V+ +  +      ++ L ++P+   
Sbjct: 306 ------------------------------GVAGSVSLLQNVTLSTQPISSLDWSPDKRG 335

Query: 314 II-TASKDGTLRVWNI 328
           +   +S D T+RV  +
Sbjct: 336 LCVCSSFDQTVRVLIV 351

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFK 129
             + K H  +V  +      + L  TA   G + + K +    +S K
Sbjct: 252 SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK 298

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLA-TACADGVIRV 117
           +  +      ++ L +S D + L   +  D  +RV
Sbjct: 314 LQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 90.7 bits (226), Expect = 2e-20
 Identities = 65/384 (16%), Positives = 110/384 (28%), Gaps = 117/384 (30%)

Query: 85  NTLKGHGDSVTGLCFS-SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
            TL+GH   VT L  S      L +A  D  +   KL     K    +R           
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDK 200
                +    +      S         +K +       G+   +  G          H  
Sbjct: 71  CTLTADGAYAL------SA------SWDKTLRLWDVATGETYQRFVG----------HKS 108

Query: 201 R----AILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN---- 252
                 I               S  I S S    I +W          +    L      
Sbjct: 109 DVMSVDI-----------DKKASM-IISGSRDKTIKVW---------TIKGQCLATLLGH 147

Query: 253 ----NMAAISPN------GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV 302
               +   + PN         + +A     VK W +       ++A        GH S +
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQIEAD-----FIGHNSNI 199

Query: 303 TWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLK----VLPIPLLDSNGATLQY 358
             L  +P+   I +A KDG + +WN+  +  +     TL     V               
Sbjct: 200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKAM----YTLSAQDEVFS------------- 242

Query: 359 DRLSLSSDGKILAATHGSTLQ-WLSVETGKVLDTAE-------KAHEGEITCMAWAP--K 408
             L+ S +   LAA   + ++ + S++   ++D          KA E     +AW+   +
Sbjct: 243 --LAFSPNRYWLAAATATGIKVF-SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299

Query: 409 TIPMGNQQVSVLATSSVDKKVKLW 432
           T+               D  +++W
Sbjct: 300 TL----------FAGYTDNVIRVW 313

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 78.3 bits (194), Expect = 3e-16
 Identities = 44/258 (17%), Positives = 82/258 (31%), Gaps = 55/258 (21%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPP 141
                GH   V  +        + +   D  I   K+     +    L      G     
Sbjct: 100 YQRFVGHKSDVMSVDIDKKASMIISGSRDKTI---KVWTIKGQCLATLL-----GHNDWV 151

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEH-HKV 197
           + V    N  +   +   +S       G +K +   + N+ + ++   G      H   +
Sbjct: 152 SQVRVVPNEKADDDSVTIISA------GNDKMVKAWNLNQFQIEADFIG------HNSNI 199

Query: 198 HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL------GNVDTNQLK 251
           +           + T  + DG+ I AS  +  +I +W+    K +        V      
Sbjct: 200 N-----------TLTA-SPDGTLI-ASAGKDGEIMLWNLAAKKAMYTLSAQDEV------ 240

Query: 252 NNMAAISPNGRFLAAAAFTAD-VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN 310
               A SPN  +LAAA  TA  +KV+ +                 K  +     L ++ +
Sbjct: 241 -FSLAFSPNRYWLAAA--TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297

Query: 311 SEQIITASKDGTLRVWNI 328
            + +     D  +RVW +
Sbjct: 298 GQTLFAGYTDNVIRVWQV 315

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           V + KGH   V     ++DG    +A  D  +R+
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 44/374 (11%), Positives = 91/374 (24%), Gaps = 88/374 (23%)

Query: 89  GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG----PPTAV 144
               ++T      D K +     +     +   D +    K  +I +             
Sbjct: 3   HMTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGN 62

Query: 145 AFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDKR 201
            F    + +                 +      +T        L       +        
Sbjct: 63  TFEKVGSHLY------KA------RLDGHDFLFNTIIRDGSKML-------KRAD----- 98

Query: 202 AILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL-------GNVDTNQLKNNM 254
                + A  T             +   DI +                  +         
Sbjct: 99  -----YTAVDTA-KLQMRRF-ILGTTEGDIKVLDSNFNLQREIDQAHVSEI-------TK 144

Query: 255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314
               P+G  L +++    +K+W +   KDG     ++   L GH++ VT +        +
Sbjct: 145 LKFFPSGEALISSSQDMQLKIWSV---KDG-----SNPRTLIGHRATVTDIAIIDRGRNV 196

Query: 315 ITASKDGTLRVWNINVRYHLDEDPKTLK--------VLPIPLLDSNGATL------QYDR 360
           ++AS DGT+R+W       +     T          V  I L       L      + + 
Sbjct: 197 LSASLDGTIRLWECGTGTTI----HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252

Query: 361 LSLSSDGKILA-ATHGSTLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS 418
           L   + GK +        +    +V + +               +          N    
Sbjct: 253 LEFGTYGKYVIAGHVSGVITVH-NVFSKEQTIQLPSKFTCSCNSLTVDG---NNANY--- 305

Query: 419 VLATSSVDKKVKLW 432
            +     +  +  W
Sbjct: 306 -IYAGYENGMLAQW 318

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 79.2 bits (196), Expect = 3e-16
 Identities = 57/414 (13%), Positives = 107/414 (25%), Gaps = 113/414 (27%)

Query: 86  TLKGHG---DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142
            + G+    D+  G  F   G  L  A  DG      L +   +    +   L       
Sbjct: 48  VVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHD---FLFNTIIRDGSKM---LKRADYTA 101

Query: 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPG-----------P 188
                      +       G        E  I    +N   Q+                P
Sbjct: 102 VDTAKLQMRRFI------LG------TTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP 149

Query: 189 E------------IK-WEHHKVHDKRAILTLFGASAT-YGTA---DGSTIIASCSEGTDI 231
                        +K W    V D     TL G  AT    A    G  +  S S    I
Sbjct: 150 SGEALISSSQDMQLKIWS---VKDGSNPRTLIGHRATVTDIAIIDRGRNV-LSASLDGTI 205

Query: 232 SIWHGKTGKLLG------------------NVDTNQL------KNNMAAISPNGRFLAAA 267
            +W   TG  +                        QL      K N       G+++ A 
Sbjct: 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG 265

Query: 268 AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF-APNSEQIITASKDGTLRVW 326
             +  + V   V+SK+  ++             +   L     N+  I    ++G L  W
Sbjct: 266 HVSGVITVHN-VFSKEQTIQL------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQW 318

Query: 327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETG 386
                     D ++ +      L         + +  ++    +++   ++++   +   
Sbjct: 319 ----------DLRSPECPVGEFLI--NEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366

Query: 387 KVLDTAE--------KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           +    A          +++  ++   +       G     VL     +    L+
Sbjct: 367 ESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNG----EVLEVGK-NNFCALY 415

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 30/262 (11%), Positives = 77/262 (29%), Gaps = 45/262 (17%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPP 141
               + H   +T L F   G+ L ++  D  +++         + + L      G     
Sbjct: 132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKI--WSVKDGSNPRTLI-----GHRATV 184

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVH 198
           T +A  D   +++      S         +  I       G         E     H   
Sbjct: 185 TDIAIIDRGRNVL------SA------SLDGTIRLWECGTGTTIHTFNRKE---NPHDGV 229

Query: 199 DKRAILTLFGASATYGTADG---------STIIASCSEGTDISIWHGKTGKLLGNVDT-- 247
           +  A+           +               + +      I++ +  + +    + +  
Sbjct: 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF 289

Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
               N++     N  ++ A      +  W+ + S +  V        L    + +  + F
Sbjct: 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWD-LRSPECPVGEF-----LINEGTPINNVYF 343

Query: 308 APNSEQIITASKDGTLRVWNIN 329
           A  +   +++  D ++++  I+
Sbjct: 344 AAGA-LFVSSGFDTSIKLDIIS 364

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 3/63 (4%)

Query: 64  KPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDA 123
               + H   +        D    +        L F + GK +      GVI VH   + 
Sbjct: 220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH---NV 276

Query: 124 SSK 126
            SK
Sbjct: 277 FSK 279

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 51/376 (13%), Positives = 109/376 (28%), Gaps = 75/376 (19%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV--HKLDDASSKSFKFLRINLPPGGPP 141
             T   H   VT + ++     + T   D    V   + D    ++   LR+N       
Sbjct: 48  ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN----RAA 103

Query: 142 TAVAFADNATSIVVATHNLSG---CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVH 198
           T V ++ N     V     SG    S+  + +E     +    +             +  
Sbjct: 104 TFVRWSPNEDKFAVG----SGARVISVCYFEQE----NDWWVSKHLK-------RPLR-- 146

Query: 199 DKRAILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA-- 255
               IL+L +         +   + A+        +       +    + +   + +   
Sbjct: 147 --STILSLDW-------HPNNVLL-AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN 196

Query: 256 ---------------AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
                            SP+G  LA A   + V +           +   +++ +K  + 
Sbjct: 197 TVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP----SAPEQPPRALITVKLSQL 252

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360
            +  L +A  S  I+ A  + +  +   N     +      + L      ++        
Sbjct: 253 PLRSLLWANES-AIVAAGYNYSPILLQGN-----ESGWAHTRDLDAGTSKTSFTHTGNTG 306

Query: 361 LSLSSDGKILAATHGSTLQWL----SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQ 416
                +G +      ST + +    S ++   L T    H+  I  +             
Sbjct: 307 EGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTV---HQNMIATLRP----YAGTPGN 359

Query: 417 VSVLATSSVDKKVKLW 432
           ++   +S  D +V LW
Sbjct: 360 ITAFTSSGTDGRVVLW 375

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 80.2 bits (198), Expect = 1e-16
 Identities = 49/368 (13%), Positives = 100/368 (27%), Gaps = 67/368 (18%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPPTA 143
            L           F+S      T  A   + +++ D    K  +              T 
Sbjct: 6   VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-----DHDKIVTC 60

Query: 144 VAFADNATSIVVATHNLSG---CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDK 200
           V +A  +  IV      +     + Y+Y   +       KQ   L             ++
Sbjct: 61  VDWAPKSNRIV------TCSQDRNAYVY---EKRPDGTWKQTLVLLR----------LNR 101

Query: 201 RAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN------NM 254
            A    +       + +     A  S    IS+ + +         +  LK         
Sbjct: 102 AATFVRW-------SPNE-DKFAVGSGARVISVCYFEQEN--DWWVSKHLKRPLRSTILS 151

Query: 255 AAISPNGRFLAAAAFTADVKVW-----EIVYSKDGLVKAVTS----VMQLKGHKSAVTWL 305
               PN   LAA        V      ++    +  V         V         V  +
Sbjct: 152 LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAV 211

Query: 306 CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365
            F+P+   +  A  D ++ +   +          T+K           + L    L  ++
Sbjct: 212 GFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK----------LSQLPLRSLLWAN 261

Query: 366 DGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS 424
           +  I+AA +  S +     E+G        A   + +           G ++   ++ ++
Sbjct: 262 ESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGN--TGEGREEEGPVSFTA 319

Query: 425 VDKKVKLW 432
           +    +  
Sbjct: 320 LRSTFRNM 327

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 35/261 (13%), Positives = 81/261 (31%), Gaps = 42/261 (16%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRV---------HKLDD---ASSKSFKFLRI 133
             +    ++  L +  +   LA  CAD    V          K +     S   F  +  
Sbjct: 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA 200

Query: 134 NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWE 193
             P GG   AV F+ +  ++  A H+             +++        + P   I  +
Sbjct: 201 EYPSGGWVHAVGFSPSGNALAYAGHD------------SSVTIAYPSAPEQPPRALITVK 248

Query: 194 HHKVHDKRAILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTG-KLLGNVDTNQLK 251
                 +  + +L +         + + I+A+    + I +   ++G     ++D    K
Sbjct: 249 LS----QLPLRSLLW-------ANESA-IVAAGYNYSPILLQGNESGWAHTRDLDAGTSK 296

Query: 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC-FAPN 310
            +       G         +   +     + D    + +       H++ +  L  +A  
Sbjct: 297 TSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGT 356

Query: 311 S---EQIITASKDGTLRVWNI 328
                   ++  DG + +W +
Sbjct: 357 PGNITAFTSSGTDGRVVLWTL 377

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 86.9 bits (216), Expect = 9e-19
 Identities = 47/261 (18%), Positives = 86/261 (32%), Gaps = 52/261 (19%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPP 141
           + T+ GH  +V+ +    +G  + +A  D  I++   +  +    K        G     
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM--WEVQTGYCVKTFT-----GHREWV 237

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEH-HKV 197
             V    + T I       S         ++ +        + +++L        H H V
Sbjct: 238 RMVRPNQDGTLIA------SC------SNDQTVRVWVVATKECKAELRE------HRHVV 279

Query: 198 HD--------KRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD--T 247
                       +I    G+        G  +  S S    I +W   TG  L  +    
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFL-LSGSRDKTIKMWDVSTGMCLMTLVGHD 338

Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
           N +          G+F+ + A    ++VW+    K+           L  H+  VT L F
Sbjct: 339 NWV--RGVLFHSGGKFILSCADDKTLRVWDY---KNKRCMKT-----LNAHEHFVTSLDF 388

Query: 308 APNSEQIITASKDGTLRVWNI 328
              +  ++T S D T++VW  
Sbjct: 389 HKTAPYVVTGSVDQTVKVWEC 409

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 51/236 (21%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTAD-- 272
             S +  S SE   I +W  +TG     +   T+ +     +   +G+ LA+ +  AD  
Sbjct: 119 VFSVM-VSASEDATIKVWDYETGDFERTLKGHTDSV--QDISFDHSGKLLASCS--ADMT 173

Query: 273 VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY 332
           +K+W+    +         +  + GH   V+ +   PN + I++AS+D T+++W +   Y
Sbjct: 174 IKLWDF---QGF-----ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225

Query: 333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS---TLQ-WLSVETGKV 388
            +    KT            G       +  + DG ++A+   S   T++ W  V T + 
Sbjct: 226 CV----KTFT----------GHREWVRMVRPNQDGTLIAS--CSNDQTVRVW-VVATKEC 268

Query: 389 LDTAEKAHEGEITCMAWAP----KTIPMGNQQVSV--------LATSSVDKKVKLW 432
                  H   + C++WAP     +I       +         L + S DK +K+W
Sbjct: 269 KAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 47/252 (18%), Positives = 87/252 (34%), Gaps = 83/252 (32%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLL-------GNVDTNQLKNNMAAISPNGRFLAAAAF 269
           +G  I  S S    I +W  +TG  +         V        M   + +G  +A+ + 
Sbjct: 203 NGDHI-VSASRDKTIKMWEVQTGYCVKTFTGHREWV-------RMVRPNQDGTLIASCSN 254

Query: 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS------------------ 311
              V+VW +               +L+ H+  V  + +AP S                  
Sbjct: 255 DQTVRVWVV---ATK-----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306

Query: 312 --EQIITASKDGTLRVWNINVRYHLDEDPKTLK-----VLPIPLLDSNGATLQYDRLSLS 364
               +++ S+D T+++W+++    L     TL      V  +                  
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCL----MTLVGHDNWVRGV---------------LFH 347

Query: 365 SDGKILAATHGS---TLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
           S GK + +   +   TL+ W   +  + + T   AHE  +T + +              +
Sbjct: 348 SGGKFILS--CADDKTLRVW-DYKNKRCMKTLN-AHEHFVTSLDFHKT----APY----V 395

Query: 421 ATSSVDKKVKLW 432
            T SVD+ VK+W
Sbjct: 396 VTGSVDQTVKVW 407

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 66.1 bits (162), Expect = 5e-12
 Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 38/181 (20%)

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
              P    + +A+  A +KVW+    + G  +       LKGH  +V  + F  + + + 
Sbjct: 115 IFHPVFSVMVSASEDATIKVWDY---ETGDFERT-----LKGHTDSVQDISFDHSGKLLA 166

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATH 374
           + S D T+++W+      +    +T+           G       +S+  +G  +  A+ 
Sbjct: 167 SCSADMTIKLWDFQGFECI----RTMH----------GHDHNVSSVSIMPNGDHIVSASR 212

Query: 375 GSTLQ-WLSVETGKVLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKL 431
             T++ W  V+TG  + T    H   +  +        I          A+ S D+ V++
Sbjct: 213 DKTIKMW-EVQTGYCVKTFT-GHREWVRMVRPNQDGTLI----------ASCSNDQTVRV 260

Query: 432 W 432
           W
Sbjct: 261 W 261

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 42/148 (28%)

Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354
           L GH+S VT + F P    +++AS+D T++VW          D +T              
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVW----------DYETGDFE---------R 144

Query: 355 TLQ------YDRLSLSSDGKILAATHGS---TLQ-WLSVETGKVLDTAEKAHEGEITCMA 404
           TL+       D +S    GK+LA+   S   T++ W   +  + + T    H+  ++ ++
Sbjct: 145 TLKGHTDSVQD-ISFDHSGKLLAS--CSADMTIKLW-DFQGFECIRTM-HGHDHNVSSVS 199

Query: 405 WAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             P     G+     + ++S DK +K+W
Sbjct: 200 IMPN----GDH----IVSASRDKTIKMW 219

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           TLKGH DSV  + F   GK LA+  AD  I++
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
              L GH   VT + F      + +A  D  I+V
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKV 134

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 85.6 bits (213), Expect = 9e-19
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 38/220 (17%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
           +G  + AS S    I IW    GK    +  ++L  +  A S +   L +A+    +K+W
Sbjct: 34  NGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92

Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
           ++     G       +  LKGH + V    F P S  I++ S D ++R+W++     L  
Sbjct: 93  DV---SSG-----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL-- 142

Query: 337 DPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQ-WLSVETGKVLDTAEK 394
             KTL             +     +  + DG ++  +++    + W    +G+ L T   
Sbjct: 143 --KTLP----------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-DTASGQCLKTLID 189

Query: 395 AHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
                ++ + ++P  K I            +++D  +KLW
Sbjct: 190 DDNPPVSFVKFSPNGKYI----------LAATLDNTLKLW 219

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 73.6 bits (182), Expect = 1e-14
 Identities = 45/233 (19%), Positives = 88/233 (37%), Gaps = 59/233 (25%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLL-------GNVDTNQLKNNMAAISPNGRFLAAAAF 269
             + I  S S    + IW  KTGK L         V       +    + +G  + ++++
Sbjct: 118 QSNLI-VSGSFDESVRIWDVKTGKCLKTLPAHSDPV-------SAVHFNRDGSLIVSSSY 169

Query: 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
               ++W+      G          +      V+++ F+PN + I+ A+ D TL++W+ +
Sbjct: 170 DGLCRIWDT---ASGQCLKTL----IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222

Query: 330 VRYHLDEDPKTLK-----VLPIPLLDS--NGATLQYDRLSLSSDGKI-LAATHGSTLQWL 381
               L    KT          I    S   G  +    +S S D  + +         W 
Sbjct: 223 KGKCL----KTYTGHKNEKYCIFANFSVTGGKWI----VSGSEDNLVYI---------W- 264

Query: 382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV--DKKVKLW 432
           +++T +++   +  H   +   A  P      N     +A++++  DK +KLW
Sbjct: 265 NLQTKEIVQKLQ-GHTDVVISTACHPT----ENI----IASAALENDKTIKLW 308

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 72.9 bits (180), Expect = 2e-14
 Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 42/183 (22%)

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
             SPNG +LA+++    +K+W      DG  +       + GHK  ++ + ++ +S  ++
Sbjct: 30  KFSPNGEWLASSSADKLIKIWGA---YDGKFEKT-----ISGHKLGISDVAWSSDSNLLV 81

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG 375
           +AS D TL++W++          K LK L        G +      + +    ++ +  G
Sbjct: 82  SASDDKTLKIWDV-------SSGKCLKTL-------KGHSNYVFCCNFNPQSNLIVS--G 125

Query: 376 S---TLQ-WLSVETGKVLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKV 429
           S   +++ W  V+TGK L T   AH   ++ + +      I           +SS D   
Sbjct: 126 SFDESVRIW-DVKTGKCLKTLP-AHSDPVSAVHFNRDGSLI----------VSSSYDGLC 173

Query: 430 KLW 432
           ++W
Sbjct: 174 RIW 176

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 65.6 bits (161), Expect = 4e-12
 Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 43/163 (26%)

Query: 281 SKDGLVKAVTSVMQ-LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK 339
           SK   VK   ++   L GH  AV+ + F+PN E + ++S D  +++W             
Sbjct: 4   SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW----------GAY 53

Query: 340 TLKVLPIPLLDSNGATLQ------YDRLSLSSDGKILAATHGS---TLQ-WLSVETGKVL 389
             K            T+        D ++ SSD  +L +   S   TL+ W  V +GK L
Sbjct: 54  DGKFE---------KTISGHKLGISD-VAWSSDSNLLVS--ASDDKTLKIW-DVSSGKCL 100

Query: 390 DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            T  K H   + C  + P+     N     + + S D+ V++W
Sbjct: 101 KTL-KGHSNYVFCCNFNPQ----SNL----IVSGSFDESVRIW 134

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 65.6 bits (161), Expect = 5e-12
 Identities = 49/253 (19%), Positives = 83/253 (32%), Gaps = 90/253 (35%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPP 141
           + TL  H D V+ + F+ DG  + ++  DG+ R+   D AS +  K     L      P 
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLK----TLIDDDNPPV 195

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVH 198
           + V F+ N   I+ AT +              +     ++GK      G       HK +
Sbjct: 196 SFVKFSPNGKYILAATLD------------NTLKLWDYSKGKCLKTYTG-------HK-N 235

Query: 199 DKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAIS 258
           +K  I       A +    G   I S SE   + IW+ +T +++                
Sbjct: 236 EKYCI------FANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQ--------------- 273

Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
                                              +L+GH   V      P    I +A+
Sbjct: 274 -----------------------------------KLQGHTDVVISTACHPTENIIASAA 298

Query: 319 --KDGTLRVWNIN 329
              D T+++W  +
Sbjct: 299 LENDKTIKLWKSD 311

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 48.2 bits (116), Expect = 2e-06
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
             TL GH  +V+ + FS +G+ LA++ AD +I++
Sbjct: 16  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI 49

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
             T+ GH   ++ + +SSD   L +A  D  +++
Sbjct: 58  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           + TLKGH + V    F+     + +   D  +R+
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 83.4 bits (207), Expect = 7e-18
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 33/224 (14%)

Query: 220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMAAISPNGRFLAAAAFTADVK 274
            I+A+ S    I +   K       +D              A  P+   LAA +F + V 
Sbjct: 25  GILATGSTDRKIKLVSVKYDDFTL-IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83

Query: 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHL 334
           +W            +  +  ++GH++ V  + ++ +   + T S+D ++ +W  +     
Sbjct: 84  IWA-KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142

Query: 335 DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS---TLQ-WLSVETG--KV 388
            E    L+            +     +       +LA+   S   T++ W        + 
Sbjct: 143 YECISVLQ----------EHSQDVKHVIWHPSEALLAS--SSYDDTVRIW-KDYDDDWEC 189

Query: 389 LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           +      HEG +    +         + V  L + S D  V++W
Sbjct: 190 VAVLN-GHEGTVWSSDFDK------TEGVFRLCSGSDDSTVRVW 226

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 80.3 bits (199), Expect = 7e-17
 Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 31/227 (13%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMAAISPNGRFLAAAAFTA 271
           DG  + A+CS    + IW             + L+            P+   LA++++  
Sbjct: 118 DGYYL-ATCSRDKSVWIWETDESGEEYEC-ISVLQEHSQDVKHVIWHPSEALLASSSYDD 175

Query: 272 DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS--EQIITASKDGTLRVWNIN 329
            V++W+     D   + V     L GH+  V    F       ++ + S D T+RVW   
Sbjct: 176 TVRIWKD---YDDDWECVAV---LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229

Query: 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ-WLSVETGKV 388
                D+     + +       +    Q   ++   +G I +      L  +     G+ 
Sbjct: 230 GDDEDDQQEWVCEAIL-----PDVHKRQVYNVAWGFNGLIASVGADGVLAVY-EEVDGEW 283

Query: 389 LDTAEKAHEG---EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
              A++A      EI  + W       G     +LAT   D  V  W
Sbjct: 284 KVFAKRALCHGVYEINVVKWLE---LNGKT---ILATGGDDGIVNFW 324

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 40/238 (16%), Positives = 76/238 (31%), Gaps = 52/238 (21%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVD---------TNQLKNNMAAISPNGRFLAAA 267
             S + A+ S  + +SIW  +                   N++K    A S +G +LA  
Sbjct: 69  HTSLL-AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKG--VAWSNDGYYLATC 125

Query: 268 AFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325
           +   D  V +WE   S +           L+ H   V  + + P+   + ++S D T+R+
Sbjct: 126 S--RDKSVWIWETDESGEEYECISV----LQEHSQDVKHVIWHPSEALLASSSYDDTVRI 179

Query: 326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS--------- 376
           W        D+D + + VL       NG               +     GS         
Sbjct: 180 WKDY-----DDDWECVAVL-------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227

Query: 377 --TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
                    +           H+ ++  +AW             ++A+   D  + ++
Sbjct: 228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN---------GLIASVGADGVLAVY 276

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 31/184 (16%), Positives = 67/184 (36%), Gaps = 29/184 (15%)

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
           +   +   LA  +    +K+  +          +  V+    HK A+  + + P++  + 
Sbjct: 19  SFDFSQGILATGSTDRKIKLVSV----KYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA 74

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG 375
             S D T+ +W          +   L ++        G   +   ++ S+DG  LA    
Sbjct: 75  AGSFDSTVSIWAKEESADRTFEMDLLAII-------EGHENEVKGVAWSNDGYYLAT--C 125

Query: 376 S---TLQWL-SVETGKVLDTAE---KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK 428
           S   ++ W+   +            + H  ++  + W P          ++LA+SS D  
Sbjct: 126 SRDKSV-WIWETDESGEEYECISVLQEHSQDVKHVIWHPSE--------ALLASSSYDDT 176

Query: 429 VKLW 432
           V++W
Sbjct: 177 VRIW 180

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 21/126 (16%)

Query: 217 DGSTI-IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA---------AISPNGRFLAA 266
                 + S S+ + + +W           +                  A   NG  +A+
Sbjct: 208 TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL-IAS 266

Query: 267 AAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL-CFAPNSEQII-TASKDGT 322
               AD  + V+E     DG  K       L      +  +     N + I+ T   DG 
Sbjct: 267 VG--ADGVLAVYEE---VDGEWKVFA-KRALCHGVYEINVVKWLELNGKTILATGGDDGI 320

Query: 323 LRVWNI 328
           +  W++
Sbjct: 321 VNFWSL 326

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 33/210 (15%), Positives = 66/210 (31%), Gaps = 44/210 (20%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPP 141
           ++ L+ H   V  + +      LA++  D  +R+ K  D   +    L      G  G  
Sbjct: 146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-----GHEGTV 200

Query: 142 TAVAFADNATSIVVATHNLSGCS------LYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
            +  F        + +      S      ++ Y  +      E   ++ LP         
Sbjct: 201 WSSDFDKTEGVFRLCS-----GSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-------- 247

Query: 196 KVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK---- 251
            VH  R +      +  +   +G  +IAS      ++++    G+               
Sbjct: 248 -VHK-RQVY-----NVAW-GFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYE 297

Query: 252 -NNMAAISPNGRFLAAAAFTAD--VKVWEI 278
            N +  +  NG+ + A     D  V  W +
Sbjct: 298 INVVKWLELNGKTILATG-GDDGIVNFWSL 326

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           +  ++GH + V G+ +S+DG  LAT   D  + +
Sbjct: 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI 133

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 5/34 (14%), Positives = 11/34 (32%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           V     H  ++  + +      LA    D  + +
Sbjct: 51  VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 34/165 (20%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKC--LATACADGVIRV-HKLDDASSKSFKFLRINLPPGG- 139
           V  L GH  +V    F        L +   D  +RV   + D      +++   + P   
Sbjct: 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVH 249

Query: 140 --PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEH 194
                 VA+  N   I       S  +      +  +      +G+ +      +    H
Sbjct: 250 KRQVYNVAWGFNGL-IA------SVGA------DGVLAVYEEVDGEWKV---FAKRALCH 293

Query: 195 HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG 239
                +  ++            +G TI+A+  +   ++ W  +  
Sbjct: 294 G--VYEINVVKWL-------ELNGKTILATGGDDGIVNFWSLEKA 329

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 38/232 (16%), Positives = 87/232 (37%), Gaps = 30/232 (12%)

Query: 214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN--NMAAISPNGRFLAAAAFTA 271
           GT  G T+ A+ S  + + +W          + + Q+ +  N    S N + +A A    
Sbjct: 31  GTVSG-TVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNG 89

Query: 272 DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNINV 330
            ++++      +    A+ S+ +   H S+V  + F    + ++ +   +G + +W++N 
Sbjct: 90  SLELYST----NEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN- 144

Query: 331 RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS---SDGKILA-ATHGSTLQ-WLSVET 385
                           PL      +   + +SL+   S   + A A   +    W  ++ 
Sbjct: 145 ------KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIW-DLKA 197

Query: 386 GKVLDT-----AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            K +            + +++ + W PK     + +V+    S  D  + +W
Sbjct: 198 KKEVIHLSYTSPNSGIKQQLSVVEWHPK----NSTRVATATGSDNDPSILIW 245

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 59/379 (15%), Positives = 116/379 (30%), Gaps = 75/379 (19%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
                 H      +  +  G   A    D  + +       +   +    +L        
Sbjct: 16  ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELW---SLLAADSEKPIASLQVDSKFND 72

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           + ++ N   I  A  N    SL +Y      STNE            ++ +H      ++
Sbjct: 73  LDWSHNNKIIAGALDN---GSLELY------STNEANNAINSMA---RFSNHS----SSV 116

Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA-------- 255
            T+      +       ++AS     +I IW         +  T                
Sbjct: 117 KTV-----KFNAKQD-NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170

Query: 256 -AISPN-GRFLAAAAFTADVKVWEIVYSKDG-LVKAVTSVMQLKGHKSAVTWLCFAP-NS 311
            A + +     A+A  +    +W++   K    V  ++      G K  ++ + + P NS
Sbjct: 171 LAWNQSLAHVFASAGSSNFASIWDL---KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS 227

Query: 312 EQIITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLD--SNGATLQYDRLSLS-- 364
            ++ TA+    D ++ +W          D +        L      G       LSL   
Sbjct: 228 TRVATATGSDNDPSILIW----------DLRNANTPLQTLNQGHQKGI------LSLDWC 271

Query: 365 -SDGKILA--ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA 421
             D  +L       + L W + E+ + L     A         +AP+          + A
Sbjct: 272 HQDEHLLLSSGRDNTVLLW-NPESAEQLSQFP-ARGNWCFKTKFAPE-----AP--DLFA 322

Query: 422 TSSVDKKVKLWLAPSLESS 440
            +S D K+++    +L ++
Sbjct: 323 CASFDNKIEVQTLQNLTNT 341

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 47/314 (14%), Positives = 91/314 (28%), Gaps = 63/314 (20%)

Query: 73  KDQNKRHHPLDVNTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFL 131
            +    + PL         D V  L ++       A+A +     +   D  + K    L
Sbjct: 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI--WDLKAKKEVIHL 204

Query: 132 RINLPPGG---PPTAVAFA-DNATSIVVATHNLSGCSLYM----YGEEKAISTNEGKQQS 183
               P  G     + V +   N+T +  AT + +  S+ +           + N+G    
Sbjct: 205 SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG---- 260

Query: 184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243
                         H K  +      S  +   D    + S      + +W+ ++ + L 
Sbjct: 261 --------------HQKGIL------SLDWCHQDEHL-LLSSGRDNTVLLWNPESAEQLS 299

Query: 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT 303
                         +P    L A A            S D  ++ V ++  L        
Sbjct: 300 QFPARGNWCFKTKFAPEAPDLFACA------------SFDNKIE-VQTLQNLT------- 339

Query: 304 WLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLD--SNGATLQYD-- 359
                 + ++  T  ++     WN   R    E P    +         S  A   +   
Sbjct: 340 ---NTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK 396

Query: 360 RLSLSSDGKILAAT 373
            + ++ DGK ++ T
Sbjct: 397 LVQITPDGKGVSIT 410

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 33/164 (20%)

Query: 273 VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY 332
           VK+ E             +      H      +    +       S D +L +W++    
Sbjct: 7   VKLAEFS----------RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL--- 53

Query: 333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQWLSVETGKVLDT 391
              +  K +  L       +        L  S + KI+A A    +L+  S         
Sbjct: 54  -AADSEKPIASLQ----VDSKFN----DLDWSHNNKIIAGALDNGSLELYSTNEANNAIN 104

Query: 392 AE---KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           +      H   +  + +  K       Q +VLA+   + ++ +W
Sbjct: 105 SMARFSNHSSSVKTVKFNAK-------QDNVLASGGNNGEIFIW 141

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 54/379 (14%), Positives = 108/379 (28%), Gaps = 48/379 (12%)

Query: 83  DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142
             N  K H   +  +   +      +   DG ++V       +++ K             
Sbjct: 8   TANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSY----SHFVH 61

Query: 143 AVAFADNATSIVVATHNLSGCSLYMY---GEEKAISTNEGKQQSKLPGPEIKWEHHKVHD 199
                       +       C +      G+          +  K+   ++      +  
Sbjct: 62  KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 121

Query: 200 KRAILTLFGASATY--------GTADGSTII----ASCSEGTDISIWHGKTGKLLGNVDT 247
                  +GAS               G+T I        E   +++    T +L G V++
Sbjct: 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 181

Query: 248 NQLKNNMA---AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW 304
               +  A    IS  G  +A       V++ E+   +   +    S   +  + +++  
Sbjct: 182 PMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRS 238

Query: 305 LCFAPNSEQIITASKDGT---LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR- 360
           + F+P    +  A    +   + ++       +     +L V       S G        
Sbjct: 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERI----GSLSVPTHSSQASLGEFAHSSWV 294

Query: 361 --LSLSSDGKILA-ATHGSTLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQ 416
             LS +  G+ L  A     L+ W  V+T + + T    H  +I            G+  
Sbjct: 295 MSLSFNDSGETLCSAGWDGKLRFW-DVKTKERITTLN-MHCDDIEIEEDILAVDEHGDS- 351

Query: 417 VSVLATSSVDKK---VKLW 432
              LA   V       K W
Sbjct: 352 ---LAEPGVFDVKFLKKGW 367

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 22/157 (14%)

Query: 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN-------VRYHLDEDPKTL 341
           + +    K H + +  +    +    ++ S DG L+VW+                     
Sbjct: 6   IATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 63

Query: 342 KVLPIPLLDSNGATLQYDRL-----SLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAH 396
            +  +  +        ++       S S D      T     + +  E   +LD+  K H
Sbjct: 64  GLHHVD-VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 122

Query: 397 EGEITCMAWAPKTIPMGNQQVS-VLATSSVDKKVKLW 432
                   WA K     ++ +S  L  + V     +W
Sbjct: 123 SF------WALKWGASNDRLLSHRLVATDVKGTTYIW 153

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 41/255 (16%), Positives = 83/255 (32%), Gaps = 52/255 (20%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG---P 140
           V +        T +  S  G  +AT   +G +++   + ++ +                 
Sbjct: 179 VESPMTPSQFATSVDISERGL-IATGFNNGTVQI--SELSTLRPLYNFESQHSMINNSNS 235

Query: 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDK 200
             +V F+   + + +A  + S   + +Y       T  G++   L  P         H  
Sbjct: 236 IRSVKFSPQGSLLAIAHDSNSFGCITLY------ETEFGERIGSLSVPT--------HSS 281

Query: 201 RAILTLFG-ASATYGTA---DGSTIIASCSEGTDISIWHGKTGKLL----GNVDTNQLKN 252
           +A L  F  +S     +    G T+  S      +  W  KT + +     + D  +++ 
Sbjct: 282 QASLGEFAHSSWVMSLSFNDSGETL-CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 340

Query: 253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE 312
           ++ A+  +G  LA             V+    L K   S M              A  +E
Sbjct: 341 DILAVDEHGDSLAEPG----------VFDVKFLKKGWRSGM-------------GADLNE 377

Query: 313 QIITASKDGTLRVWN 327
            +     D ++R + 
Sbjct: 378 SLCCVCLDRSIRWFR 392

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 11/43 (25%), Positives = 15/43 (34%)

Query: 75  QNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
               H          H   V  L F+  G+ L +A  DG +R 
Sbjct: 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 17/183 (9%)

Query: 256 AISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314
           A+SP    +L   +    +K+W +   K+ +V  V S        S VT +   PN +  
Sbjct: 70  AVSPGETPYLITGSDQGVIKIWNL---KEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAF 126

Query: 315 ITASKDGTLRVWNINV--RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK--IL 370
             +SKDG + V  +N   +    +      +  I L +           +  ++ K  ++
Sbjct: 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186

Query: 371 AATHGSTLQWLSVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKV 429
           A T+ S +    + T + L   E     G ++ +    +           L   +    +
Sbjct: 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE----CCV----LILGTTRGII 238

Query: 430 KLW 432
            +W
Sbjct: 239 DIW 241

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 82.1 bits (203), Expect = 4e-17
 Identities = 46/387 (11%), Positives = 102/387 (26%), Gaps = 102/387 (26%)

Query: 89  GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL-------RINLPPGG-- 139
               +VT +    +    A +  DG I V K++    +S           +INL   G  
Sbjct: 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKN 168

Query: 140 --PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKV 197
                  AF +   S++VA  NLS                  ++   +         H  
Sbjct: 169 EYAVRMRAFVNEEKSLLVALTNLSRV--------IIFDIRTLERLQIIENS----PRHG- 215

Query: 198 HDKRAILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL------GNVDTNQL 250
               A+ ++           +   +I   + G  I IW  +   L+       +     +
Sbjct: 216 ----AVSSICI-------DEECCVLILGTTRGI-IDIWDIRFNVLIRSWSFGDHAPITHV 263

Query: 251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP- 309
                    N   +   +    + +W       G  +               +   F P 
Sbjct: 264 -EVCQFYGKNSVIVVGGSSKTFLTIWNF---VKGHCQYA-----FINSDEQPSMEHFLPI 314

Query: 310 ------------------------NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP 345
                                   N + ++T     ++ ++++N       +  + K + 
Sbjct: 315 EKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLN-------ELSSSKAVI 367

Query: 346 IPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAW 405
            P   S+                 + A     L+ +   +   +D +   H   I  ++ 
Sbjct: 368 SPSRFSD---------VFIPTQ--VTANLTMLLRKMKRTSTHSVDDSL-YHHDIINSIST 415

Query: 406 APKTIPMGNQQVSVLATSSVDKKVKLW 432
                 +      +L        + ++
Sbjct: 416 ----CEVDETP--LLVACDNSGLIGIF 436

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 2/36 (5%)

Query: 84  VNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRV 117
           V+    H D +  +      +   L      G+I +
Sbjct: 400 VDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI 435

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 81.5 bits (202), Expect = 4e-17
 Identities = 51/366 (13%), Positives = 110/366 (30%), Gaps = 70/366 (19%)

Query: 83  DVNTLKGHGDSVTGLCFSSD---GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG 139
           D+       DS+  L FS     G  L        +R  ++ D+     K  +++    G
Sbjct: 31  DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH---TG 87

Query: 140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI-----STNEGKQQSKLPGPEIKWEH 194
           P   V ++D+ + +       +         +K       S+N   Q  ++         
Sbjct: 88  PVLDVCWSDDGSKVF------TA------SCDKTAKMWDLSSN---QAIQIAQ------- 125

Query: 195 HKVHDKRAILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNN 253
              HD   + T+ +  +      + S  + + S    +  W  ++   +  +   +    
Sbjct: 126 ---HDA-PVKTIHWIKA-----PNYSC-VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYC 175

Query: 254 MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ 313
              I P    +A A     V   E   ++    + +         K     +    + + 
Sbjct: 176 ADVIYPMAV-VATAERGLIVYQLE---NQPSEFRRI-----ESPLKHQHRCVAIFKDKQN 226

Query: 314 IIT----ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD--RLSLSSDG 367
             T     S +G + +  IN      +D  T K       +++     Y    ++     
Sbjct: 227 KPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH 285

Query: 368 KILA-ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426
             LA         +   +    L T+E+  +  I+   +       G    ++ A +S  
Sbjct: 286 GTLATVGSDGRFSFWDKDARTKLKTSEQ-LDQPISACCFNHN----G----NIFAYASSY 336

Query: 427 KKVKLW 432
              K  
Sbjct: 337 DWSKGH 342

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 45/273 (16%), Positives = 99/273 (36%), Gaps = 58/273 (21%)

Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM---AAISP- 259
           ++LFG ++ +GT  G+++  S +      +          +++     ++     + SP 
Sbjct: 1   MSLFGTTSGFGT-SGTSMFGSATTDNHNPMK---------DIEVTSSPDDSIGCLSFSPP 50

Query: 260 --NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317
              G FL A ++  DV+ WE+  S   + KA       + H   V  +C++ +  ++ TA
Sbjct: 51  TLPGNFLIAGSWANDVRCWEVQDSGQTIPKA------QQMHTGPVLDVCWSDDGSKVFTA 104

Query: 318 SKDGTLRVWNIN----------------VRYHLDEDP---------KTLKV----LPIPL 348
           S D T ++W+++                + +    +          KTLK        P+
Sbjct: 105 SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164

Query: 349 LDSNGATLQYDRLSLSSDGKILA-ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407
           +        Y    +     ++A A  G  +  L  +  +     E   + +  C+A   
Sbjct: 165 MVLQLPERCY-CADVIYPMAVVATAERGLIVYQLENQPSEFRRI-ESPLKHQHRCVAI-- 220

Query: 408 KTIPMGNQQVSVLATSSVDKKVKLWLAPSLESS 440
                   + +  A  S++ +V +        +
Sbjct: 221 --FKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 38/269 (14%), Positives = 68/269 (25%), Gaps = 59/269 (21%)

Query: 83  DVNT-----LKGHGDSVTGLCF--SSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL 135
           D+++     +  H   V  + +  + +  C+ T   D  ++    D  SS     L++  
Sbjct: 114 DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW--DTRSSNPMMVLQL-- 169

Query: 136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
            P     A          VVAT   +   L +Y     +     + +             
Sbjct: 170 -PERCYCADVIYPM---AVVAT---AERGLIVYQ----LENQPSEFRRIESP-------L 211

Query: 196 KVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-------LLGNVDTN 248
           K H  R +     A          T  A  S    ++I +               +    
Sbjct: 212 K-HQHRCV-----AIFKDKQNKP-TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG 264

Query: 249 QLKNNMA--------AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
              +           A  P    LA          W+          A T +   +    
Sbjct: 265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD--------KDARTKLKTSEQLDQ 316

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNIN 329
            ++  CF  N      AS     +     
Sbjct: 317 PISACCFNHNGNIFAYASSYDWSKGHEFY 345

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLR 132
           + T +     ++  CF+ +G   A A +    + H+  +   K++ FLR
Sbjct: 308 LKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLR 356

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 18/99 (18%)

Query: 89  GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPPTAVAF 146
               +V G+ F      LAT  +DG        D  +++    ++        P +A  F
Sbjct: 271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFW---DKDART----KLKTSEQLDQPISACCF 323

Query: 147 ADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKL 185
             N              S   Y   K       ++++ +
Sbjct: 324 NHNGNIFA------YASS---YDWSKGHEFYNPQKKNYI 353

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 45/279 (16%), Positives = 85/279 (30%), Gaps = 56/279 (20%)

Query: 86  TLKGHGDSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP-- 141
           TL     S+  + F+    G  LA    DG++R++   + S      L   +     P  
Sbjct: 105 TLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164

Query: 142 ------TAVAFADNATS---IVVATHNLSGCSLYMYGEEKAI-----STNEGKQQSKLPG 187
                   +++  +  S   + V+              E+AI        +    +KLPG
Sbjct: 165 NHLQSDFCLSWCPSRFSPEKLAVS------------ALEQAIIYQRGKDGKLHVAAKLPG 212

Query: 188 PEIKWEHHK--VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245
                  HK  +           + A         I A+  +   I I+           
Sbjct: 213 -------HKSLIRS--------ISWAPSIGRWYQLI-ATGCKDGRIRIFKITEKLSPLAS 256

Query: 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305
           + +   +NM   S +    A     +D    E    +      V  + +   H   V  +
Sbjct: 257 EESLTNSNMFDNSADVDMDAQGR--SDSNTEEKAELQS--NLQVELLSEHDDHNGEVWSV 312

Query: 306 CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL 344
            +      + +A  DG +R+W          + K + V+
Sbjct: 313 SWNLTGTILSSAGDDGKVRLWKAT----YSNEFKCMSVI 347

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 42/239 (17%), Positives = 80/239 (33%), Gaps = 56/239 (23%)

Query: 220 TIIASCSE-GTDISIWHGKTGKLLGNVDTNQLKNNMA-------------AISPN---GR 262
             +A     G  + ++       L +         ++             +  P+     
Sbjct: 125 LKLACLGNDGI-LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE 183

Query: 263 FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ----IITAS 318
            LA +A    +        KDG +        L GHKS +  + +AP+  +    I T  
Sbjct: 184 KLAVSALEQAIIYQ---RGKDGKLHVAAK---LPGHKSLIRSISWAPSIGRWYQLIATGC 237

Query: 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-----AT 373
           KDG +R++       + E    L         S  +    +    S+D  + A     + 
Sbjct: 238 KDGRIRIFK------ITEKLSPLA--------SEESLTNSNMFDNSADVDMDAQGRSDSN 283

Query: 374 HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
                +  S    ++L   +  H GE+  ++W       G     +L+++  D KV+LW
Sbjct: 284 TEEKAELQSNLQVELLSEHDD-HNGEVWSVSWNL----TGT----ILSSAGDDGKVRLW 333

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 255 AAISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP--N 310
                 GR +A  +  +D  +KV+++         + +     + H S++  + +A    
Sbjct: 17  VVYDFYGRHVATCS--SDQHIKVFKLDKDTSNWELSDS----WRAHDSSIVAIDWASPEY 70

Query: 311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPI-------------PLLDSNGATLQ 357
              I +AS D T+++W  +         +  K+  +             P     G  L 
Sbjct: 71  GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP--AHLGLKL- 127

Query: 358 YDRLSLSSDGKIL---AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGN 414
                L +DG +    A        W      KVL      H     C++W P       
Sbjct: 128 ---ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP-----SR 179

Query: 415 QQVSVLATSSVDKKVKLW 432
                LA S++++ +   
Sbjct: 180 FSPEKLAVSALEQAIIYQ 197

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 42/233 (18%), Positives = 86/233 (36%), Gaps = 26/233 (11%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMAAISP--NGRFLAAAAF 269
            G  + A+CS    I ++          + ++  +           +    GR +A+A++
Sbjct: 22  YGRHV-ATCSSDQHIKVFKLDKDTSNWEL-SDSWRAHDSSIVAIDWASPEYGRIIASASY 79

Query: 270 TADVKVWEI-VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE--QIITASKDGTLRVW 326
              VK+WE     ++   +    +  L   K ++  + FAP     ++     DG LR++
Sbjct: 80  DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY 139

Query: 327 NI--NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD---GKILA-ATHGSTLQW 380
           +               +KVL IP             LS        + LA +     + +
Sbjct: 140 DALEPSDLRSWTLTSEMKVLSIPP---ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIY 196

Query: 381 LSVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
              + GK+   A+   H+  I  ++WAP           ++AT   D +++++
Sbjct: 197 QRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY----QLIATGCKDGRIRIF 245

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 27/149 (18%)

Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLK-----VLPI--- 346
             GH   V  + +      + T S D  ++V+ ++      E   + +     ++ I   
Sbjct: 7   DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA 66

Query: 347 PLLDSNGATLQYDRLSLSSDGKIL---AATHGSTLQWLSVETGKVLDTAEKAHEGEITCM 403
                 G  +     S S D  +                      L       +G +  +
Sbjct: 67  S--PEYGRII----ASASYDKTVKLWEEDPDQEECSGRRWNKLCTL----NDSKGSLYSV 116

Query: 404 AWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            +AP    +G      LA    D  ++L+
Sbjct: 117 KFAPAH--LG----LKLACLGNDGILRLY 139

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           ++    H   V  + ++  G  L++A  DG +R+
Sbjct: 299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 81  PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           P       GH D V  + +   G+ +AT  +D  I+V
Sbjct: 1   PHMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKV 37

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 84  VNTLKGHGDSVTGLCFSSD----GKCLATACADGVIRVHKLDD 122
              L GH   +  + ++       + +AT C DG IR+ K+ +
Sbjct: 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 81.0 bits (201), Expect = 4e-17
 Identities = 48/261 (18%), Positives = 88/261 (33%), Gaps = 60/261 (22%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP-- 141
                GH   V  + FSSD + + +   D  I+   L +         +  +        
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK---LWNTLGV----CKYTVQDESHSEW 173

Query: 142 -TAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEH-HK 196
            + V F+ N+++ ++     S       G +K +   +    K ++   G      H   
Sbjct: 174 VSCVRFSPNSSNPIIV----SC------GWDKLVKVWNLANCKLKTNHIG------HTGY 217

Query: 197 VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN---- 252
           ++           + T  + DGS   AS  +     +W    GK L       L      
Sbjct: 218 LN-----------TVTV-SPDGSLC-ASGGKDGQAMLWDLNEGKHLY-----TLDGGDII 259

Query: 253 NMAAISPNGRFLAAAAFTAD--VKVWEIVYSKDGL--VKAVTSVMQLKGHKSAVTWLCFA 308
           N    SPN  +L AA       +K+W+ +  K  +  +K        K      T L ++
Sbjct: 260 NALCFSPNRYWLCAAT---GPSIKIWD-LEGKIIVDELKQEVISTSSKAEPPQCTSLAWS 315

Query: 309 PNSEQIITASKDGTLRVWNIN 329
            + + +     D  +RVW + 
Sbjct: 316 ADGQTLFAGYTDNLVRVWQVT 336

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 79.9 bits (198), Expect = 1e-16
 Identities = 45/238 (18%), Positives = 80/238 (33%), Gaps = 65/238 (27%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMAAISPNGR--FLAAAAF 269
           D   I  S S    I +W+           T Q ++     +    SPN     + +  +
Sbjct: 139 DNRQI-VSGSRDKTIKLWNTLGVCKY----TVQDESHSEWVSCVRFSPNSSNPIIVSCGW 193

Query: 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
              VKVW +    +  +K         GH   +  +  +P+     +  KDG   +W++N
Sbjct: 194 DKLVKVWNL---ANCKLKTN-----HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245

Query: 330 VRYHLDEDPKTLK----VLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ-WLSVE 384
              HL     TL     +                 L  S +   L A  G +++ W  +E
Sbjct: 246 EGKHL----YTLDGGDIINA---------------LCFSPNRYWLCAATGPSIKIW-DLE 285

Query: 385 TGKVLDTAE--------KAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
              ++D  +        KA   + T +AW+   +T+               D  V++W
Sbjct: 286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL----------FAGYTDNLVRVW 333

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 74.1 bits (183), Expect = 9e-15
 Identities = 35/228 (15%), Positives = 84/228 (36%), Gaps = 42/228 (18%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA---------AISPN-GRFLAA 266
                 +S  +    +++           +   L+  +          A +P     + +
Sbjct: 3   HHHHH-SSGVDLGTENLYFQSMMT-----EQMTLRGTLKGHNGWVTQIATTPQFPDMILS 56

Query: 267 AAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW 326
           A+    + +W++                L+GH   V+ +  + + +  ++ S DGTLR+W
Sbjct: 57  ASRDKTIIMWKL---TRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113

Query: 327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQ-WLSVE 384
           ++           T +          G T     ++ SSD + +   +   T++ W ++ 
Sbjct: 114 DL-------TTGTTTRRF-------VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 159

Query: 385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             K     +++H   ++C+ ++P      N    ++ +   DK VK+W
Sbjct: 160 VCKYTVQ-DESHSEWVSCVRFSP------NSSNPIIVSCGWDKLVKVW 200

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 69.8 bits (172), Expect = 2e-13
 Identities = 35/227 (15%), Positives = 79/227 (34%), Gaps = 44/227 (19%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMAAISPNGRFLAAAAFTA 271
               +I S S    I +W     +    +    L+      +   IS +G+F  + ++  
Sbjct: 49  QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108

Query: 272 DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR 331
            +++W++     G     T+  +  GH   V  + F+ ++ QI++ S+D T+++WN    
Sbjct: 109 TLRLWDL---TTG-----TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT--- 157

Query: 332 YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK--ILA-ATHGSTLQ-WLSVETGK 387
                    +    +        +     +  S +    I+        ++ W ++   K
Sbjct: 158 -------LGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW-NLANCK 206

Query: 388 VLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
           +       H G +  +  +P               A+   D +  LW
Sbjct: 207 LKTNHI-GHTGYLNTVTVSPDGSLC----------ASGGKDGQAMLW 242

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
            L+GH   V+ +  SSDG+   +   DG +R+
Sbjct: 81  ALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 84  VNTLKGHGDSVTGLCFSSD-GKCLATACADGVIRV 117
             TLKGH   VT +  +      + +A  D  I +
Sbjct: 31  RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIM 65

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 81.0 bits (201), Expect = 4e-17
 Identities = 44/222 (19%), Positives = 79/222 (35%), Gaps = 50/222 (22%)

Query: 222 IASCSEGTDISIWHGKTGKLL-------GNVDTNQLKNNMAAISPNGRFLAAAAFTADVK 274
           I + S  T  ++W  +TG+         G+V          +++P+ R   + A  A  K
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDV-------MSLSLAPDTRLFVSGACDASAK 209

Query: 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHL 334
           +W++   ++G            GH+S +  +CF PN     T S D T R++++      
Sbjct: 210 LWDV---REG-----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL------ 255

Query: 335 DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS---TLQ-WLSVETGKVLD 390
               + L          +        +S S  G++L A  G        W          
Sbjct: 256 -RADQELMTYS-----HDNIICGITSVSFSKSGRLLLA--GYDDFNCNVW-DALKADRAG 306

Query: 391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
                H+  ++C+         G      +AT S D  +K+W
Sbjct: 307 VLA-GHDNRVSCLGVTDD----GMA----VATGSWDSFLKIW 339

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 78.3 bits (194), Expect = 4e-16
 Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 46/225 (20%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM---AAISPNGRFLAAAAFTADV 273
           D   +  S S+   + IW   T   +       L+++     A +P+G ++A        
Sbjct: 66  DSRLL-LSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121

Query: 274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333
            ++  + +++G V+       L GH   ++   F  ++ QI+T+S D T  +W+I     
Sbjct: 122 SIYN-LKTREGNVRVSRE---LAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDI----- 171

Query: 334 LDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS---TLQ-WLSVETGKVL 389
             E  +             G T     LSL+ D ++  +  G+   + + W  V  G   
Sbjct: 172 --ETGQQTTTF-------TGHTGDVMSLSLAPDTRLFVS--GACDASAKLW-DVREGMCR 219

Query: 390 DTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
            T    HE +I  + + P               AT S D   +L+
Sbjct: 220 QTFT-GHESDINAICFFPNGNAF----------ATGSDDATCRLF 253

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 29/178 (16%)

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
               + R L +A+    + +W+              V  +    S V    +AP+   + 
Sbjct: 62  HWGTDSRLLLSASQDGKLIIWDS---YTT-----NKVHAIPLRSSWVMTCAYAPSGNYVA 113

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG 375
               D    ++N+  R       + L           G T          D +I+ ++  
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELA----------GHTGYLSCCRFLDDNQIVTSSGD 163

Query: 376 STLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           +T   W  +ETG+   T    H G++  ++ AP              + + D   KLW
Sbjct: 164 TTCALW-DIETGQQTTTFT-GHTGDVMSLSLAPD----TRL----FVSGACDASAKLW 211

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 70.2 bits (173), Expect = 2e-13
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 11/113 (9%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN--NMAAISPNGRFLAAAAFTADVK 274
           +G+   A+ S+     ++  +  + L     + +       + S +GR L A     +  
Sbjct: 237 NGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295

Query: 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
           VW+                 L GH + V+ L    +   + T S D  L++WN
Sbjct: 296 VWD--------ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 7/112 (6%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
           D      S +      +W  + G        ++   N     PNG   A  +  A  +++
Sbjct: 195 DTRLF-VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253

Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
           ++   +                   +T + F+ +   ++    D    VW+ 
Sbjct: 254 DL---RAD---QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 31/144 (21%)

Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354
           L+GH + +  + +  +S  +++AS+DG L +W+             +  +P         
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS-------YTTNKVHAIP-------LR 96

Query: 355 TLQYDRLSLSSDGKILAATHGS---TLQWLSVETGKVLDTAE---KAHEGEITCMAWAPK 408
           +      + +  G  +A   G         +++T +           H G ++C  +   
Sbjct: 97  SSWVMTCAYAPSGNYVAC--GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD- 153

Query: 409 TIPMGNQQVSVLATSSVDKKVKLW 432
                NQ    + TSS D    LW
Sbjct: 154 ----DNQ----IVTSSGDTTCALW 169

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
             TL+GH   +  + + +D + L +A  DG + +
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLII 81

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
             T  GH   +  +CF  +G   AT   D   R+
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
              L GH + V+ L  + DG  +AT   D  +++
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
             T  GH   V  L  + D +   +   D   ++
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 5/34 (14%), Positives = 12/34 (35%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           V+ +      V    ++  G  +A    D +  +
Sbjct: 90  VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 2/36 (5%)

Query: 84  VNTLKGHG--DSVTGLCFSSDGKCLATACADGVIRV 117
           + T         +T + FS  G+ L     D    V
Sbjct: 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 45/368 (12%), Positives = 101/368 (27%), Gaps = 117/368 (31%)

Query: 84  VNTLKGHGDSVTGLCFS-SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142
                G G S+TGL F+  +      +  +G  R+    D      +    +        
Sbjct: 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ---DFKGNILRVFASSDTINIWFC 213

Query: 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEH-HKVH 198
           ++  + ++  +V      +G           +   +  +GK+   L        H  KV 
Sbjct: 214 SLDVSASSRMVV------TG------DNVGNVILLNM-DGKELWNLRM------HKKKVT 254

Query: 199 DKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAIS 258
                                  +A+ S    + IW  +  +   +              
Sbjct: 255 -----------HVAL-NPCCDWFLATASVDQTVKIWDLRQVRGKASFLY----------- 291

Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
                                                  H+  V   CF+P+  +++T  
Sbjct: 292 ------------------------------------SLPHRHPVNAACFSPDGARLLTTD 315

Query: 319 KDGTLRVWNIN-------VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL--SSDGKI 369
           +   +RV++ +       +  H     + L  +            +Y+ + +    D   
Sbjct: 316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI------KAAWHPRYNLIVVGRYPDPNF 369

Query: 370 LAATHGSTLQ----WLSVETGKVLDTAEKAHEGEITC-MAWAPKTIPMGNQQVSVLATSS 424
            + T    L+    +    +GK++          I+    +     PMG+     LA++ 
Sbjct: 370 KSCT-PYELRTIDVF-DGNSGKMMCQLYDPESSGISSLNEFN----PMGDT----LASAM 419

Query: 425 VDKKVKLW 432
               + +W
Sbjct: 420 -GYHILIW 426

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 28/232 (12%), Positives = 70/232 (30%), Gaps = 54/232 (23%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLL---------GNVDTNQLKNNMAAISP-NGRFLAA 266
              + +A  S+G DI +W+                G++            +P N     A
Sbjct: 130 THPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSI-------TGLKFNPLNTNQFYA 182

Query: 267 AAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW 326
           ++     ++ +      G    +               L  + +S  ++T    G + + 
Sbjct: 183 SSMEGTTRLQDF----KG--NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL 236

Query: 327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ----WLS 382
           N++      ++   L+              +   ++L+       AT  S  Q    W  
Sbjct: 237 NMD-----GKELWNLR----------MHKKKVTHVALNPCCDWFLAT-ASVDQTVKIW-D 279

Query: 383 VETGKVLDT--AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           +   +   +      H   +    ++    P G +    L T+    +++++
Sbjct: 280 LRQVRGKASFLYSLPHRHPVNAACFS----PDGAR----LLTTDQKSEIRVY 323

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 37/253 (14%), Positives = 79/253 (31%), Gaps = 66/253 (26%)

Query: 222 IASCSEGTDISIWHGKTGKLLGNVDTNQLK----NNMA-AISPNGRFLAAAAFTADVKVW 276
                      +W G  G  +     + ++    + +  A  P+ +     +F   +  +
Sbjct: 50  SGPSRRCDSDCLWVGLAGPQILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSY 109

Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNINVRYHLD 335
            I+              +        T L + P     +   SK G + +WN  ++    
Sbjct: 110 RILQ-------------KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT 156

Query: 336 EDP---------------------------KTLKV------LPIPLLDSNGATLQYDRLS 362
                                          T ++      +      S+   + +  L 
Sbjct: 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLD 216

Query: 363 LSSDGKILAATHGS---TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSV 419
           +S+  +++    G     +  L++  GK L    + H+ ++T +A  P            
Sbjct: 217 VSASSRMVVT--GDNVGNVILLNM-DGKELWN-LRMHKKKVTHVALNP-------CCDWF 265

Query: 420 LATSSVDKKVKLW 432
           LAT+SVD+ VK+W
Sbjct: 266 LATASVDQTVKIW 278

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 33/262 (12%), Positives = 75/262 (28%), Gaps = 54/262 (20%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
           +          L  S+  + + T    G +    L +   K    LR++       T VA
Sbjct: 204 SSDTINIWFCSLDVSASSRMVVTGDNVGNVI---LLNMDGKELWNLRMH---KKKVTHVA 257

Query: 146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILT 205
                   +      +         ++ +         K+      W+  +V  K + L 
Sbjct: 258 LNPCCDWFLA-----TA------SVDQTV---------KI------WDLRQVRGKASFLY 291

Query: 206 LFG-----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLL------GNVDTNQLKNNM 254
                    +A + + DG+ +  +  + ++I ++               +     L    
Sbjct: 292 SLPHRHPVNAACF-SPDGARL-LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK 349

Query: 255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK---AVT--SVMQL-KGHKSAVTWLC-F 307
           AA  P    +       D         +   +      +   + QL     S ++ L  F
Sbjct: 350 AAWHPRYNLIVVG-RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEF 408

Query: 308 APNSEQIITASKDGTLRVWNIN 329
            P  + + +A     + +W+  
Sbjct: 409 NPMGDTLASAM-GYHILIWSQQ 429

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 30/172 (17%), Positives = 43/172 (25%), Gaps = 43/172 (25%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRV---------HKLD---DASSKSFKFLRI 133
               H   V   CFS DG  L T      IRV           L        +    ++ 
Sbjct: 291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350

Query: 134 NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEI 190
              P      V    +                    E + I     N GK   +L     
Sbjct: 351 AWHPRYNLIVVGRYPDPNFKSCTP-----------YELRTIDVFDGNSGKMMCQL----- 394

Query: 191 KWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242
            ++         I +L   +       G T +AS      I IW  +  +  
Sbjct: 395 -YDPE----SSGISSLNEFN-----PMGDT-LASAMGYH-ILIWSQQEARTR 434

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 12/94 (12%), Positives = 22/94 (23%), Gaps = 5/94 (5%)

Query: 54  SQPISKKSHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDG-KCLATACAD 112
              + + S                  + + +          T L +       +A     
Sbjct: 83  QHKLGRASWPSVQQGLQQSFLHTLDSYRI-LQKAAPFDRRATSLAWHPTHPSTVAVGSKG 141

Query: 113 GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF 146
           G I    L +   K        +  GG  T + F
Sbjct: 142 GDIM---LWNFGIKDKPTFIKGIGAGGSITGLKF 172

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 51/333 (15%), Positives = 104/333 (31%), Gaps = 98/333 (29%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASS-KSFKFLRINLPPG--GPPT 142
            +      +  +C+ S+ + L     D +I    L   S       L      G  G   
Sbjct: 54  VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI-----GHQGNVC 108

Query: 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAIST-------NEGKQQSKLPGPEIKWEH- 194
           +++F D    ++      SG            S         EG     L        H 
Sbjct: 109 SLSFQDG--VVI------SG------------SWDKTAKVWKEGSLVYNLQA------HN 142

Query: 195 HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-- 252
             V D + +           +   +    + S    I +W  +  K++            
Sbjct: 143 ASVWDAKVV-----------SFSENK-FLTASADKTIKLW--QNDKVI-----KTFSGIH 183

Query: 253 ----NMAAISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC 306
                  A+  +G F++ +    D  +K+ ++     G       +   +GH+S V  + 
Sbjct: 184 NDVVRHLAVVDDGHFISCS---NDGLIKLVDM---HTG-----DVLRTYEGHESFVYCIK 232

Query: 307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD 366
             PN   I++  +D T+R+W+        E+    +V+           +    +   S+
Sbjct: 233 LLPNG-DIVSCGEDRTVRIWSK-------ENGSLKQVI-------TLPAISIWSVDCMSN 277

Query: 367 GKILAATHGSTLQ-WLSVETGKVLDTAE-KAHE 397
           G I+  +  + ++ + S E  +     E K   
Sbjct: 278 GDIIVGSSDNLVRIF-SQEKSRWASEDEIKGEL 309

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 70.6 bits (174), Expect = 9e-14
 Identities = 46/257 (17%), Positives = 78/257 (30%), Gaps = 74/257 (28%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
           D S + AS S    + +W      L   V T Q   N          L            
Sbjct: 28  DDSKV-ASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFG--------- 77

Query: 277 EIVYSKDGLVKAV--------TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
                KD ++  V          +  L GH+  V  L F      +I+ S D T +VW  
Sbjct: 78  ----GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG--VVISGSWDKTAKVWKE 131

Query: 329 NVRYHLDEDPKTLK-----VLPIPLLDSNGATL---QYDR-------------------- 360
               +       L+     V    ++  +         D+                    
Sbjct: 132 GSLVY------NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHND 185

Query: 361 ----LSLSSDGKILAATHGSTLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQ 415
               L++  DG  ++ ++   ++    + TG VL T E  HE  + C+   P        
Sbjct: 186 VVRHLAVVDDGHFISCSNDGLIKLV-DMHTGDVLRTYE-GHESFVYCIKLLPN------- 236

Query: 416 QVSVLATSSVDKKVKLW 432
               + +   D+ V++W
Sbjct: 237 --GDIVSCGEDRTVRIW 251

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 60/367 (16%), Positives = 111/367 (30%), Gaps = 107/367 (29%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL-DDASSKSFKFLRINLPPG--GPPT 142
           TLKGH   V  +    D K +A+   DG +   +L           +         G   
Sbjct: 13  TLKGHDQDVRDVVAVDDSK-VASVSRDGTV---RLWSKDDQWLGTVVY-----TGQGFLN 63

Query: 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRA 202
           +V +      ++       G      G++  I+                +       +  
Sbjct: 64  SVCYDSEKELLL------FG------GKDTMINGVP------------LFA---TSGEDP 96

Query: 203 ILTLFGASAT-YGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK------NNMA 255
           + TL G        +    ++ S S      +W  K G L+ N     L+       +  
Sbjct: 97  LYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVW--KEGSLVYN-----LQAHNASVWDAK 149

Query: 256 AISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAPNSE 312
            +S +      A+  AD  +K+W+     +        +    G H   V  L    +  
Sbjct: 150 VVSFSENKFLTAS--ADKTIKLWQ-----ND-----KVIKTFSGIHNDVVRHLAVVDDG- 196

Query: 313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ------YDRLSLSSD 366
             I+ S DG +++ ++           T  VL          T +      Y  + L  +
Sbjct: 197 HFISCSNDGLIKLVDM----------HTGDVL---------RTYEGHESFVYC-IKLLPN 236

Query: 367 GKILAATHGSTLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV 425
           G I++     T++ W S E G +           I  +          N     +   S 
Sbjct: 237 GDIVSCGEDRTVRIW-SKENGSLKQVIT-LPAISIWSVDCMS------NGD---IIVGSS 285

Query: 426 DKKVKLW 432
           D  V+++
Sbjct: 286 DNLVRIF 292

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
              +     S+  +   S+G  +    +D ++R+
Sbjct: 259 KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRI 291

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 84  VNTLKG-HGDSVTGLCFSSDGKCLATACADGVIRV 117
           + T  G H D V  L    DG    +   DG+I++
Sbjct: 176 IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKL 209

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 42/224 (18%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
               ++ +   G  + IW+ +T   + ++   +             ++   +    ++V+
Sbjct: 24  TEPWVLTTLYSGR-VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82

Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
                          V+  + H   +  +   P    +++ S D T+++WN    + L+ 
Sbjct: 83  N--------YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE- 133

Query: 337 DPKTLK-----VLPIPLLDSNGATLQYDRLSLS-SDGKILA-ATHGSTLQ-WLSVETGKV 388
             +T +     V+ +               + +  D    A      T++ W S+     
Sbjct: 134 --QTFEGHEHFVMCV---------------AFNPKDPSTFASGCLDRTVKVW-SLGQSTP 175

Query: 389 LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             T     E  +  + + P   P        + T+S D  +K+W
Sbjct: 176 NFTLTTGQERGVNYVDYYPL--PDKPY----MITASDDLTIKIW 213

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 46/186 (24%)

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
              P   ++    ++  V++W     +         V  ++  ++ V    F      II
Sbjct: 20  DFHPTEPWVLTTLYSGRVEIWNY---ETQ-----VEVRSIQVTETPVRAGKFIARKNWII 71

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ--YDR---LSLSSDGKIL 370
             S D  +RV+N N          T + +            +   D    +++      +
Sbjct: 72  VGSDDFRIRVFNYN----------TGEKV---------VDFEAHPDYIRSIAVHPTKPYV 112

Query: 371 AATHGS---TLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426
            +  GS   T++ W + E    L+   + HE  + C+A+ PK         S  A+  +D
Sbjct: 113 LS--GSDDLTVKLW-NWENNWALEQTFEGHEHFVMCVAFNPK-------DPSTFASGCLD 162

Query: 427 KKVKLW 432
           + VK+W
Sbjct: 163 RTVKVW 168

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 47/226 (20%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-NMAAIS--PNGRFLAAAAFTADV 273
           D ST  AS      + +W          + T Q +  N       P+  ++  A+    +
Sbjct: 152 DPSTF-ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210

Query: 274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333
           K+W+    +       + V  L+GH S V++  F P    II+ S+DGTL++WN +    
Sbjct: 211 KIWDY---QTK-----SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262

Query: 334 LDEDPKTLKVLPIPLLDSNGATLQY--DR---LSLSSDGK--ILAATHGSTLQWLSVETG 386
                                TL    +R   ++    G+   +A+   +    LS+   
Sbjct: 263 E-------------------KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303

Query: 387 KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           +   + +      +  + W+       N   S + T+ +    ++ 
Sbjct: 304 EPTLSLDP-----VGKLVWSGG----KNAAASDIFTAVIRGNEEVE 340

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 44/358 (12%), Positives = 97/358 (27%), Gaps = 82/358 (22%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
           V TL+GH  +V+   F      + +   DG +++   + ++ K  K L + L        
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI--WNSSTYKVEKTLNVGL---ERSWC 275

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           +A         +A    SG        +                         + +    
Sbjct: 276 IATHPTGRKNYIA----SGF-------DNGF---------------TVL---SLGNDEPT 306

Query: 204 LTLFGASATYGTADGSTI---IASCSEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISP 259
           L+L        +   +     I +     +  +   +   L    + +  +     A SP
Sbjct: 307 LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP 366

Query: 260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319
           NGRF+                  DG     T++              + P+S       +
Sbjct: 367 NGRFVTV--------------VGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDE 412

Query: 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ 379
            G ++ +          + K +    +P + S    L          G +L       + 
Sbjct: 413 TGQIKYYK---------NFKEVTSWSVP-MHSAIDRL--------FSGALLGVKSDGFVY 454

Query: 380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437
           +   + G ++       +     + W+      G      +   + +         +L
Sbjct: 455 FFDWDNGTLVRR----IDVNAKDVIWSDN----GEL----VMIVNTNSNGDEASGYTL 500

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 35/225 (15%), Positives = 76/225 (33%), Gaps = 42/225 (18%)

Query: 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMAAISPNGRFLAAAAFT 270
           A  + I    S+   I +++  TG+ +        +         A+ P   ++ + +  
Sbjct: 65  ARKNWI-IVGSDDFRIRVFNYNTGEKVV-----DFEAHPDYIRSIAVHPTKPYVLSGSDD 118

Query: 271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTLRVWNIN 329
             VK+W      +  ++        +GH+  V  + F P +     +   D T++VW++ 
Sbjct: 119 LTVKLWNW--ENNWALEQT-----FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL- 170

Query: 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQ-WLSVETGK 387
                             L       + Y       D   +  A+   T++ W   +T  
Sbjct: 171 ------GQSTPNFT----LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW-DYQTKS 219

Query: 388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            + T E  H   ++   + P           ++ + S D  +K+W
Sbjct: 220 CVATLE-GHMSNVSFAVFHPTL--------PIIISGSEDGTLKIW 255

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 36/146 (24%)

Query: 294 QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKV--LPIPLLDS 351
                   V  + F P    ++T    G + +WN   +  +    ++++V   P+     
Sbjct: 8   TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV----RSIQVTETPV----- 58

Query: 352 NGATLQYDRLSLSSDGKILAATHGS---TLQWLSVETGKVLDTAEKAHEGEITCMAWAP- 407
                        +    +    GS    ++  +  TG+ +   E AH   I  +A  P 
Sbjct: 59  RAG-------KFIARKNWIIV--GSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPT 108

Query: 408 -KTIPMGNQQVSVLATSSVDKKVKLW 432
              +           + S D  VKLW
Sbjct: 109 KPYV----------LSGSDDLTVKLW 124

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 60/361 (16%), Positives = 104/361 (28%), Gaps = 90/361 (24%)

Query: 86  TLKGHGDSVTGLCFS-SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPPT 142
           T +GH   V  + F+  D    A+ C D  +   K+      +  F    L  G      
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTV---KVWSLGQSTPNF---TLTTGQERGVN 188

Query: 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRA 202
            V +        +     +        ++  I         K+      W+      K  
Sbjct: 189 YVDYYPLPDKPYMI----TA------SDDLTI---------KI------WD---YQTKSC 220

Query: 203 ILTLFG-----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI 257
           + TL G     + A +       II S SE   + IW+  T K+   ++    ++   A 
Sbjct: 221 VATLEGHMSNVSFAVF-HPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT 278

Query: 258 SPNGRFLA-AAAFTADVKVW-----EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS 311
            P GR    A+ F     V      E   S D + K V S     G K+A     F    
Sbjct: 279 HPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWS-----GGKNAAASDIFTAVI 333

Query: 312 EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371
                  +D  L +    +    D  P++                    L+ S +G+ + 
Sbjct: 334 RGNEEVEQDEPLSLQTKELGSV-DVFPQS--------------------LAHSPNGRFVT 372

Query: 372 ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL 431
                     +    +          G+     W P +        +  A      ++K 
Sbjct: 373 VVGDGEYVIYTALAWR------NKAFGKCQDFVWGPDS--------NSYALIDETGQIKY 418

Query: 432 W 432
           +
Sbjct: 419 Y 419

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 39/299 (13%), Positives = 81/299 (27%), Gaps = 66/299 (22%)

Query: 81  PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP 140
            L    L         L  S +G+ +     DG   ++      +K+F          G 
Sbjct: 346 SLQTKELGSVDVFPQSLAHSPNGRFVTV-VGDGEYVIYTALAWRNKAF----------GK 394

Query: 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDK 200
                +  ++ S  +                                  IK+  +K   +
Sbjct: 395 CQDFVWGPDSNSYALIDETGQ----------------------------IKY--YKNFKE 424

Query: 201 RAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN 260
               ++   SA      G+ ++   S+G  +  +    G L+  +D N         S N
Sbjct: 425 VTSWSVPMHSAIDRLFSGA-LLGVKSDGF-VYFFDWDNGTLVRRIDVN---AKDVIWSDN 479

Query: 261 GRFLAAAAFTADVKVWEI---VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317
           G  +      ++         +++KD  ++A  +            +      SE I + 
Sbjct: 480 GELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSG 539

Query: 318 SKDGTLRVWN-------------INVRYHLDEDPKTLKVLP----IPLLDSNGATLQYD 359
              G + ++                   H  ++   L  L     + L D       Y+
Sbjct: 540 KWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYE 598

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           T     D V G+ F      + T    G + +
Sbjct: 8   TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEI 39

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           V +++     V    F +    +     D  IRV
Sbjct: 48  VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 4/34 (11%), Positives = 12/34 (35%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           V   + H D +  +        + +   D  +++
Sbjct: 90  VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 52/405 (12%), Positives = 112/405 (27%), Gaps = 93/405 (22%)

Query: 47  QKKPTKPSQPISKKSHSKPHSHSHGDKDQNKRH---HPLDVNTLKGHGDSVTGLCFSSDG 103
           +    +  +P+  ++               KR     P  V    G  D           
Sbjct: 46  KLDAPEAKKPVDLRTQHNRPQRPVVTPA--KRRFNTTPERVLDAPGIIDDYYLNLLDWSN 103

Query: 104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163
             +     +  + V   +  S                  +V ++ + + + V   N    
Sbjct: 104 LNVVAVALERNVYVW--NADSGSVSALA--ETDESTYVASVKWSHDGSFLSVGLGN---- 155

Query: 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTL-FGASATYGTADGSTII 222
                G           +   + G          H  R +  L +         +   ++
Sbjct: 156 -----GLVDIYDVESQTKLRTMAG----------HQAR-VGCLSW---------NR-HVL 189

Query: 223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA-----AISPNGRFLAAAAFTADVKVWE 277
           +S S    I     +            L+ + +     A   +G  LA+      V++W+
Sbjct: 190 SSGSRSGAIHHHDVRIANHQIGT----LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245

Query: 278 IVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT---ASKDGTLRVWNINVRYHL 334
                    ++         H +AV  + + P    ++     + D  +  WN       
Sbjct: 246 --------ARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA----- 292

Query: 335 DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ----WLSVETGKVLD 390
                T   +      S   +L +     S   K + +THG        W S  +  +  
Sbjct: 293 -----TGARVNTVDAGSQVTSLIW-----SPHSKEIMSTHGFPDNNLSIW-SYSSSGLTK 341

Query: 391 TAE-KAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
             +  AH+  +   A +P  + +          +T++ D+ +K W
Sbjct: 342 QVDIPAHDTRVLYSALSPDGRIL----------STAASDENLKFW 376

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 75.0 bits (185), Expect = 7e-15
 Identities = 46/260 (17%), Positives = 83/260 (31%), Gaps = 65/260 (25%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPP 141
           + T+ GH   V  L +  +   L++    G I  H   D    + +   +    G     
Sbjct: 169 LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHH---DVRIANHQIGTLQ---GHSSEV 220

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHK-- 196
             +A+  +   +       SG      G +  +          +            H   
Sbjct: 221 CGLAWRSDGLQLA------SG------GNDNVVQIWDARSSIPKFTKTN-------HNAA 261

Query: 197 VH------DKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL 250
           V        +  +L   G     GT D             I  W+  TG  +  VD    
Sbjct: 262 VKAVAWCPWQSNLLATGG-----GTMDKQ-----------IHFWNAATGARVNTVDAGSQ 305

Query: 251 KNNMAAISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
             ++   SP+ + + +     D  + +W   YS  GL K V     +  H + V +   +
Sbjct: 306 VTSL-IWSPHSKEIMSTHGFPDNNLSIWS--YSSSGLTKQVD----IPAHDTRVLYSALS 358

Query: 309 PNSEQIITASKDGTLRVWNI 328
           P+   + TA+ D  L+ W +
Sbjct: 359 PDGRILSTAASDENLKFWRV 378

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 31/229 (13%), Positives = 69/229 (30%), Gaps = 65/229 (28%)

Query: 217 DGST---IIASCSEGTDISIWHGKTGKLL-------GNVDTNQLKNNMAAISP-NGRFLA 265
           D +T   ++A       I I +  T + +         +       N     P +   L 
Sbjct: 80  DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI-------NELKFHPRDPNLLL 132

Query: 266 AAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323
           + +   D  +++W I   +      V     ++GH+  V    +    E+I++   D +L
Sbjct: 133 SVS--KDHALRLWNI---QTD--TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 185

Query: 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSV 383
           ++W IN +  +      +K           +         + +           + +   
Sbjct: 186 KLWRINSKRMM----NAIK----------ESY------DYNPNKTNR-PFISQKIHFPDF 224

Query: 384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
            T  +       H   + C+ W    I           + S +  +  W
Sbjct: 225 STRDI-------HRNYVDCVRWLGDLI----------LSKSCENAIVCW 256

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 45/303 (14%), Positives = 90/303 (29%), Gaps = 74/303 (24%)

Query: 84  VNTLKGHGDSVTGLCFS-SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG--- 139
           +    GHG+++  L F   D   L +   D  +R   L +  +     + I     G   
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR---LWNIQTD--TLVAIFGGVEGHRD 162

Query: 140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHD 199
              +  +      I+      S       G + ++         KL      W    ++ 
Sbjct: 163 EVLSADYDLLGEKIM------SC------GMDHSL---------KL------WR---INS 192

Query: 200 KRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTNQLKNNMAAIS 258
           KR +  +  +       + +      S+   I      T  +  N VD          + 
Sbjct: 193 KRMMNAIKESYD--YNPNKTNR-PFISQ--KIHFPDFSTRDIHRNYVD---------CVR 238

Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVK------AVTSVMQLKGHKSAVTWLCFAPNSE 312
             G  + + +    +  W+    +D + K       VT + +    +  + ++ F+ +  
Sbjct: 239 WLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW 298

Query: 313 Q--IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL--SSDGK 368
           Q  +   ++ G L VW++ V         TL                        S D  
Sbjct: 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT----------HHKCGAAIRQTSFSRDSS 348

Query: 369 ILA 371
           IL 
Sbjct: 349 ILI 351

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 28/225 (12%), Positives = 59/225 (26%), Gaps = 43/225 (19%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
            G  I  SC     + +W   + +++  +  +         +PN         +  +   
Sbjct: 172 LGEKI-MSCGMDHSLKLWRINSKRMMNAIKESY------DYNPNKTNRPFI--SQKIHFP 222

Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
           +                    H++ V   C     + I++ S +  +  W         +
Sbjct: 223 D--------------FSTRDIHRNYVD--CVRWLGDLILSKSCENAIVCWKPGKMEDDID 266

Query: 337 DPKTLKVLPIPLLDSNGATLQYDRLSLSSD--GKILA-ATHGSTLQ-WLSVETGKVLDTA 392
             K  +     L   + +      +  S D   K+LA       L  W  +E        
Sbjct: 267 KIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW-DLEVEDPHKAK 325

Query: 393 EKAHEG-----EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
                       I   +++           S+L     D  +  W
Sbjct: 326 CTTLTHHKCGAAIRQTSFSRD----S----SILIAVCDDASIWRW 362

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 18/150 (12%), Positives = 50/150 (33%), Gaps = 32/150 (21%)

Query: 295 LKGHKSAVTWLCFAPNS---EQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVL-----P 345
            + H   +  + F  +S   + ++ A+     + ++              +++L      
Sbjct: 14  KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYEC-------HSQGEIRLLQSYVDA 66

Query: 346 IPLLDSNGATLQYDRLSLSSDGKILAATHGS---TLQWLSVETGKVLDTAEKAHEGEITC 402
               +       YD    ++   +LA         ++ ++  T + +      H   I  
Sbjct: 67  DADENFYTCAWTYD---SNTSHPLLAV--AGSRGIIRIINPITMQCIKHYV-GHGNAINE 120

Query: 403 MAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           + + P       +  ++L + S D  ++LW
Sbjct: 121 LKFHP-------RDPNLLLSVSKDHALRLW 143

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 84  VNTLKGH--GDSVTGLCFSSDGKCLATACADGVIRV 117
             TL  H  G ++    FS D   L   C D  I  
Sbjct: 326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR 361

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 76.5 bits (187), Expect = 4e-15
 Identities = 54/372 (14%), Positives = 111/372 (29%), Gaps = 50/372 (13%)

Query: 46  HQKKPTKPSQPISKKSHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGK- 104
            Q      ++ +      K  S     K      H + V T+      V  L +      
Sbjct: 162 SQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHA 221

Query: 105 -----CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN 159
                CL+    +G I   ++ D ++    F     P               S+ ++  +
Sbjct: 222 PHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP---------------SLTLSLAD 266

Query: 160 LSGCSLYMYGEEK-AISTNEGK-QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD 217
               +               G   +  L  PE+   + +VHD   IL++  A + +    
Sbjct: 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFE--- 322

Query: 218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI--SPNGRFLAAAAFTADVKV 275
             T++++ +      I++ K         +    +N+  +   P       +   + ++ 
Sbjct: 323 -DTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA 381

Query: 276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLD 335
                      +A  +V  L   ++ +T +  +     ++  S DG+L + N   R  L 
Sbjct: 382 VPS--------RAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL-LH 432

Query: 336 EDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKA 395
               +              +L+  +   S             +  L+V    V      A
Sbjct: 433 GIKNSSATQ---------KSLRLWKWDYSIKDDKYRIDSSYEVYPLTVN--DVSKAKIDA 481

Query: 396 HEGEITCMAWAP 407
           H   ITC  W  
Sbjct: 482 HGINITCTKWNE 493

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 56.4 bits (135), Expect = 9e-09
 Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 18/184 (9%)

Query: 255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ- 313
             ++ +         ++ ++++++  S    VK  T    +      V  L +       
Sbjct: 167 EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT----IVHSFGEVWDLKWHEGCHAP 222

Query: 314 -----IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK 368
                +   S++GT+    I        D    K+   P L  + A          S   
Sbjct: 223 HLVGCLSFVSQEGTINFLEIIDN---ATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTT 279

Query: 369 ILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK 428
           ++       +    +   +V    ++ H+  I  ++ A           +V++T +VD  
Sbjct: 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY---SDFED--TVVSTVAVDGY 334

Query: 429 VKLW 432
             ++
Sbjct: 335 FYIF 338

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 75.7 bits (187), Expect = 4e-15
 Identities = 42/235 (17%), Positives = 79/235 (33%), Gaps = 47/235 (20%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLL-------GNVDTNQLKNNMAAISPNGRFLAAAAF 269
           + + +  + ++   I ++     K L       G V            +  G  L + + 
Sbjct: 131 EDNYV-ITGADDKMIRVYDSINKKFLLQLSGHDGGV-------WALKYAH-GGILVSGST 181

Query: 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL--CFAPNSEQIITASKDGTLRVWN 327
              V+VW+I   K G           +GH S V  L      N + I+T S+D TL VW 
Sbjct: 182 DRTVRVWDI---KKG-----CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233

Query: 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL--------SLSSDGKILA-ATHGSTL 378
           +     + +  +      +              L        ++S  G I+   ++ +TL
Sbjct: 234 LPKESSVPDHGEEHDYPLVF-HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 292

Query: 379 Q-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             W  V   K L      H   I    +  +      +      ++S+D  +++W
Sbjct: 293 IVW-DVAQMKCLYILS-GHTDRIYSTIYDHE----RKR----CISASMDTTIRIW 337

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 38/240 (15%), Positives = 80/240 (33%), Gaps = 58/240 (24%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTADVK 274
            G  +  S S    + +W  K G      +   + ++        N +++   +    + 
Sbjct: 172 HGGIL-VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230

Query: 275 VWEI----VYSKDGLVKAVTSVMQ-----------LKGHKSAVTWLCFAPNSEQIITASK 319
           VW++         G       V             L+GH ++V     + +   +++ S 
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSY 288

Query: 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ--YDR---LSLSSDGKILA-AT 373
           D TL VW          D   +K L           L    DR        + K    A+
Sbjct: 289 DNTLIVW----------DVAQMKCL---------YILSGHTDRIYSTIYDHERKRCISAS 329

Query: 374 HGSTLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             +T++ W  +E G+++ T +  H   +  +  + K +           +++ D  ++ W
Sbjct: 330 MDTTIRIW-DLENGELMYTLQ-GHTALVGLLRLSDKFL----------VSAAADGSIRGW 377

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 44/361 (12%), Positives = 99/361 (27%), Gaps = 110/361 (30%)

Query: 84  VNTLKGHGDSVTGL--CFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141
            +  +GH  +V  L      + K + T   D  +    +     +S      +       
Sbjct: 196 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL---HVWKLPKES---SVPDHGEEHDY 249

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKR 201
             V          V    L G                                   H   
Sbjct: 250 PLVFHTPEENPYFVGV--LRG-----------------------------------HM-A 271

Query: 202 AILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL-------GNVDTNQLKNNM 254
           ++ T+        +  G+ +  S S    + +W     K L         +         
Sbjct: 272 SVRTV--------SGHGNIV-VSGSYDNTLIVWDVAQMKCLYILSGHTDRI-------YS 315

Query: 255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314
                  +   +A+    +++W++   ++G +        L+GH + V  L    + + +
Sbjct: 316 TIYDHERKRCISASMDTTIRIWDL---ENGELMYT-----LQGHTALVGLLRL--SDKFL 365

Query: 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH 374
           ++A+ DG++R W          D             +N + +     +      IL +  
Sbjct: 366 VSAAADGSIRGW----------DANDYS-RKFSYHHTNLSAI----TTFYVSDNILVS-- 408

Query: 375 GS--TLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL 431
           GS      + ++ +GK++         +I  + +  KT+            +        
Sbjct: 409 GSENQFNIY-NLRSGKLVHANILKDADQIWSVNFKGKTL----------VAAVEKDGQSF 457

Query: 432 W 432
            
Sbjct: 458 L 458

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 45/189 (23%)

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
               +   L+       +K W          K V     L+GH ++V   C       +I
Sbjct: 85  LSQQDRLRLSFLENIFILKNWYNP-------KFVPQRTTLRGHMTSV-ITCLQFEDNYVI 136

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ--YDR-LSLS-SDGKILA 371
           T + D  +RV+          D    K L           L        +L  + G IL 
Sbjct: 137 TGADDKMIRVY----------DSINKKFL---------LQLSGHDGGVWALKYAHGGILV 177

Query: 372 ATHGS---TLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK 427
           +  GS   T++ W  ++ G      E  H   + C+           + +  + T S D 
Sbjct: 178 S--GSTDRTVRVW-DIKKGCCTHVFE-GHNSTVRCLDIVE------YKNIKYIVTGSRDN 227

Query: 428 KVKLWLAPS 436
            + +W  P 
Sbjct: 228 TLHVWKLPK 236

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 24/186 (12%), Positives = 52/186 (27%), Gaps = 44/186 (23%)

Query: 255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314
             +S N   +          +W+ +   +    +      L    S         +  ++
Sbjct: 39  LGVSQNWNKIIRK----STSLWKKLLISEN-FVSPKGFNSLNLKLSQKYPKLSQQDRLRL 93

Query: 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ----YDRLSLSSDGKIL 370
                   L+ W          +PK +             TL+         L  +   +
Sbjct: 94  SFLENIFILKNWY---------NPKFVPQR---------TTLRGHMTSVITCLQFEDNYV 135

Query: 371 AATHGS---TLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426
               G+    ++ +      K L      H+G +  + +A   I         L + S D
Sbjct: 136 IT--GADDKMIRVY-DSINKKFLLQLS-GHDGGVWALKYAHGGI---------LVSGSTD 182

Query: 427 KKVKLW 432
           + V++W
Sbjct: 183 RTVRVW 188

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 8/115 (6%), Positives = 29/115 (25%), Gaps = 21/115 (18%)

Query: 219 STIIASCSEGTDISIWHGKTGK---LLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD--V 273
              + S +    I  W            + + +     +     +   L + +   +   
Sbjct: 362 DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS----AITTFYVSDNILVSGS---ENQF 414

Query: 274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
            ++ +   + G +        +      +  + F      ++ A +        I
Sbjct: 415 NIYNL---RSGKLVHAN----ILKDADQIWSVNFKGK--TLVAAVEKDGQSFLEI 460

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           TL+GH  SV   C   +   + T   D +IRV
Sbjct: 116 TLRGHMTSVIT-CLQFEDNYVITGADDKMIRV 146

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           +  L GH   V  L + + G  L +   D  +RV
Sbjct: 155 LLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRV 187

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 30/180 (16%)

Query: 256 AISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQ 313
              P     +A  +   D+ +W      D  V+  TS +Q  G   A+T + F   N+ Q
Sbjct: 80  EWHPTHPTTVAVGSKGGDIILW------DYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133

Query: 314 IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT 373
           +  +S  G   + +             ++V       ++     Y  + +S   ++LA  
Sbjct: 134 LFVSSIRGATTLRDF--------SGSVIQVF----AKTDSWDYWYCCVDVSVSRQMLATG 181

Query: 374 HGS-TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             +  L  L ++  ++    EK H+ ++T   + P       +   ++ATSSVD  VKLW
Sbjct: 182 DSTGRLLLLGLDGHEI--FKEKLHKAKVTHAEFNP-------RCDWLMATSSVDATVKLW 232

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 44/384 (11%), Positives = 88/384 (22%), Gaps = 119/384 (30%)

Query: 71  GDKDQN------KRHHPLDVNTLKGHGDSVTGLCFS-SDGKCLATACADGVIRVHKLDDA 123
           G K  +         +        G GD++TG+ F+  +   L  +   G      L D 
Sbjct: 92  GSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT---LRDF 148

Query: 124 SSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQS 183
           S    +              V  + +   +           L +          +G +  
Sbjct: 149 SGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST---GRLLLL-------GLDGHEIF 198

Query: 184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTA---DGSTIIASCSEGTDISIWHGKTGK 240
           K             H  +                      ++A+ S    + +W  +  K
Sbjct: 199 KEKL----------HKAKV----------THAEFNPRCDWLMATSSVDATVKLWDLRNIK 238

Query: 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
                                                             S +    H+ 
Sbjct: 239 DKN-----------------------------------------------SYIAEMPHEK 251

Query: 301 AVTWLCFAPNSEQII-TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD 359
            V    F P     + T  +   +RV++          P  +    I         L   
Sbjct: 252 PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW----SKPDQI----IIHPHRQFQHLTPI 303

Query: 360 RLSLSSDGKILAATHGSTLQWL----------SVETGKVLDTAEKAHEGEITC-MAWAPK 408
           + +      ++ A      Q L             +G ++      +   I     ++  
Sbjct: 304 KATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFS-- 361

Query: 409 TIPMGNQQVSVLATSSVDKKVKLW 432
             P G+    VLA+      + +W
Sbjct: 362 --PTGD----VLASGM-GFNILIW 378

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 30/236 (12%), Positives = 64/236 (27%), Gaps = 61/236 (25%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK------NNMAAISP-NGRFLAAAAF 269
              T +A  S+G DI +W              Q          M   +  N   L  ++ 
Sbjct: 84  THPTTVAVGSKGGDIILWDYDVQNK---TSFIQGMGPGDAITGMK-FNQFNTNQLFVSSI 139

Query: 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
                +       D     +    +          +  + + + + T    G L +    
Sbjct: 140 RGATTLR------DFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL--- 190

Query: 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL--------SLSSDGKILAATHGS---TL 378
                                 +G  +  ++L          +     L AT  S   T+
Sbjct: 191 --------------------GLDGHEIFKEKLHKAKVTHAEFNPRCDWLMAT-SSVDATV 229

Query: 379 QWLSVETGKVLDT--AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           +   +   K  ++  AE  HE  +    + P       +    L T+    +++++
Sbjct: 230 KLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD---STK----LLTTDQRNEIRVY 278

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 27/269 (10%), Positives = 67/269 (24%), Gaps = 66/269 (24%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
                        +  S   + LAT  + G + +              +++       T 
Sbjct: 156 FAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL---GLDGHEIFKEKLH---KAKVTH 209

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIK-WEHHKVHDKRA 202
             F      ++      +                            +K W+   + DK +
Sbjct: 210 AEFNPRCDWLMA-----TSSVDAT----------------------VKLWDLRNIKDKNS 242

Query: 203 ILTLFG-----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLL------GNVDTNQLK 251
            +          +A +   D + ++ +      I ++               +     L 
Sbjct: 243 YIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPHRQFQHLT 301

Query: 252 NNMAAISPNGRFLAAAAFTAD---------VKVWEIVYSKDGLVKAVTSVMQLKGH--KS 300
              A   P    + A  +  D         + +++      G       V QL+      
Sbjct: 302 PIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDA---NSG-----GLVHQLRDPNAAG 353

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNIN 329
            ++   F+P  + + +      + +WN  
Sbjct: 354 IISLNKFSPTGDVLASGM-GFNILIWNRE 381

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 75.2 bits (184), Expect = 9e-15
 Identities = 44/365 (12%), Positives = 106/365 (29%), Gaps = 42/365 (11%)

Query: 89  GHGDSVTGLCFSSDGKCLATACADGVIRV------HKLDDASSKSFKFLRINLPPGGPPT 142
              D ++ + F+  G+ LAT    G + +      +K+   S   +              
Sbjct: 26  AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFD 85

Query: 143 AVAFADNATSI--VVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDK 200
            +   +    I  +      +     +   +K I   +  ++ K P    +  + K  D 
Sbjct: 86  YLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRP----EGYNLKEED- 140

Query: 201 RAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN 260
                  G      T     +         +     +          N +     +I+ +
Sbjct: 141 -------GRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI-----SINSD 188

Query: 261 GRFLAAAAFTAD---VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-T 316
                    +AD   + +W +  +             ++     +T   F PNS      
Sbjct: 189 YETYL----SADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVY 244

Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS--NGATLQYDRLSLSSDGKILAATH 374
           +S  GT+R+ ++      D   K  +    P   S  +        +  S  G+ +    
Sbjct: 245 SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304

Query: 375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQV-------SVLATSSVDK 427
             +++   +          + HE   + +    +   + ++         SV+ T S + 
Sbjct: 305 YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN 364

Query: 428 KVKLW 432
             +++
Sbjct: 365 FFRMF 369

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 33/256 (12%), Positives = 78/256 (30%), Gaps = 63/256 (24%)

Query: 89  GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFAD 148
            H   +  +  +SD +   +A  D  I +  L+  + +SF  + I              +
Sbjct: 175 AHTYHINSISINSDYETYLSAD-DLRINLWHLEI-TDRSFNIVDIKPAN--------MEE 224

Query: 149 NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFG 208
               I  A  + + C+ ++Y   K                       ++ D RA      
Sbjct: 225 LTEVITAAEFHPNSCNTFVYSSSKGTI--------------------RLCDMRA------ 258

Query: 209 ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-NMAAISPNGRFLAAA 267
                          S        ++         +  +  + + +    S +GR++   
Sbjct: 259 ---------------SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR 303

Query: 268 AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW---------LCFAPNSEQIITAS 318
            +   VKVW++       V+       L+    ++            C+  +   ++T S
Sbjct: 304 DYL-SVKVWDLNMENR-PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS 361

Query: 319 KDGTLRVWNINVRYHL 334
            +   R+++ N +  +
Sbjct: 362 YNNFFRMFDRNTKRDI 377

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 74.2 bits (183), Expect = 9e-15
 Identities = 35/242 (14%), Positives = 70/242 (28%), Gaps = 58/242 (23%)

Query: 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMAAISPNGRFLAAAAFT 270
            D   I  S     +I +W+           + + +N     +    SP  +        
Sbjct: 128 PDNRQI-LSAGAEREIKLWNILGECKFS---SAEKENHSDWVSCVRYSPIMKSANKVQPF 183

Query: 271 ADVKVWEIV-YSKDGLVK---AVTSVMQ-LKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325
           A            DG +K       +    K H+S V  L  +PN + I T  KD  L +
Sbjct: 184 APY----FASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI 239

Query: 326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ-WLSVE 384
           W+I    +     +              A    ++++ +   + +A      ++ + ++ 
Sbjct: 240 WDILNLTYP----QREF----------DAGSTINQIAFNPKLQWVAVGTDQGVKIF-NLM 284

Query: 385 TGKVLDTAE------------KAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVK 430
           T                    K    + T +AW    K +               D  ++
Sbjct: 285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL----------FAGFTDGVIR 334

Query: 431 LW 432
            +
Sbjct: 335 TF 336

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 11/119 (9%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD--VK 274
           +G  I A+  +   + IW                  N  A +P  +++A      D  VK
Sbjct: 224 NGKYI-ATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT---DQGVK 279

Query: 275 VW-----EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
           ++               + +T     KG     T L +    +++     DG +R ++ 
Sbjct: 280 IFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 47/266 (17%), Positives = 90/266 (33%), Gaps = 72/266 (27%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ--LKN-----NMAAISPNGRFLAAAAF 269
           D   +  S S    + IW     +  G        L       +  A+S    F  ++++
Sbjct: 38  DSPVL-ISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96

Query: 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
              +++W++   + G     T+  +  GH+S V  + F+P++ QI++A  +  +++WNI 
Sbjct: 97  DKTLRLWDL---RTG-----TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148

Query: 330 -------------------VRYHLDEDPKTLKVLPIPLL------------DSNG---AT 355
                              VRY              P              ++N     T
Sbjct: 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYT 208

Query: 356 LQYDR-----LSLSSDGKILA-ATHGSTLQ-WLSVETGKVLDTAEKAHEGEITCMAWAP- 407
            +        LS+S +GK +A       L  W  +         E      I  +A+ P 
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIW-DILNLTYPQR-EFDAGSTINQIAFNPK 266

Query: 408 -KTIPMGNQQVSVLATSSVDKKVKLW 432
            + +          A  + D+ VK++
Sbjct: 267 LQWV----------AVGT-DQGVKIF 281

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 29/149 (19%)

Query: 294 QLKGHKSAVTWLCFA------PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIP 347
            L+GH   VT +          +S  +I+ S+D T+ +W +             K L   
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL--- 72

Query: 348 LLDSNGATLQYDRLSLSSDGKILAATHGS---TLQ-WLSVETGKVLDTAEKAHEGEITCM 403
                G       L+LS +     +   S   TL+ W  + TG         H+ E+  +
Sbjct: 73  ----TGHNHFVSDLALSQENCFAIS--SSWDKTLRLW-DLRTGTTYKRFV-GHQSEVYSV 124

Query: 404 AWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           A++P      N+Q   + ++  ++++KLW
Sbjct: 125 AFSPD-----NRQ---ILSAGAEREIKLW 145

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
             T K H  +V  L  S +GK +AT   D  + +
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI 239

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
               KG     T L +++ GK L     DGVIR 
Sbjct: 302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRT 335

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 8/46 (17%), Positives = 19/46 (41%)

Query: 72  DKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
            +++   +  +    L GH   V+ L  S +     ++  D  +R+
Sbjct: 57  YEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL 102

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
                GH   V  + FS D + + +A A+  I++
Sbjct: 111 YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKL 144

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
                  G ++  + F+   + +A    D  +++
Sbjct: 248 PQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKI 280

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 6/39 (15%)

Query: 85  NTLKGHGDSVTGLCF------SSDGKCLATACADGVIRV 117
             L+GH D VT +        + D   L +   D  + +
Sbjct: 15  GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMI 53

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 49/263 (18%), Positives = 90/263 (34%), Gaps = 56/263 (21%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPPTA 143
              GH   V  + FS D + + +A  D  I+   L +   +    +      G     + 
Sbjct: 467 RFVGHTKDVLSVAFSLDNRQIVSASRDRTIK---LWNTLGECKYTISEGGE-GHRDWVSC 522

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEH-HKVHD 199
           V F+ N     +     S         +K +   + +  K +S L G      H   V  
Sbjct: 523 VRFSPNTLQPTIV----SA------SWDKTVKVWNLSNCKLRSTLAG------HTGYVS- 565

Query: 200 KRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP 259
                     +    + DGS   AS  +   + +W    GK L +++ N + + +   SP
Sbjct: 566 ----------TVAV-SPDGSLC-ASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC-FSP 612

Query: 260 NGRFLAAAAFTAD--VKVWEIV-----------YSKDGLVKAVTSVMQLKGHKSAVTWLC 306
           N  +L AA    +  +K+W++               +      +     K      T L 
Sbjct: 613 NRYWLCAAT---EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN 669

Query: 307 FAPNSEQIITASKDGTLRVWNIN 329
           ++ +   + +   DG +RVW I 
Sbjct: 670 WSADGSTLFSGYTDGVIRVWGIG 692

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 62/237 (26%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMAAISPNGRFLAAAAFTA 271
           D + II S S    I +W          V   +L           +S +G+F  + ++  
Sbjct: 393 DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452

Query: 272 DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR 331
           ++++W++     G      S  +  GH   V  + F+ ++ QI++AS+D T+++WN    
Sbjct: 453 ELRLWDL---AAG-----VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-- 502

Query: 332 YHLDEDPKTLKVLPIPLL-------------DSNGATLQYDRLSLSSDGKI-LAATHGST 377
                  +    +                  ++   T+    +S S D  + +       
Sbjct: 503 ------GECKYTISEGGEGHRDWVSCVRFSPNTLQPTI----VSASWDKTVKV------- 545

Query: 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLW 432
             W ++   K+  T    H G ++ +A +P               A+   D  V LW
Sbjct: 546 --W-NLSNCKLRSTLA-GHTGYVSTVAVSPDGSLC----------ASGGKDGVVLLW 588

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 38/236 (16%), Positives = 78/236 (33%), Gaps = 47/236 (19%)

Query: 216 ADGSTIIASCSEGTDISIW--HGKTGKLLGNVD---TNQLKNNMAAISPNG--RFLAAAA 268
            D   I  S S    I +W   G+    +        + +  +    SPN     + +A+
Sbjct: 482 LDNRQI-VSASRDRTIKLWNTLGECKYTISEGGEGHRDWV--SCVRFSPNTLQPTIVSAS 538

Query: 269 FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
           +   VKVW +    +  +++      L GH   V+ +  +P+     +  KDG + +W++
Sbjct: 539 WDKTVKVWNL---SNCKLRST-----LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590

Query: 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ-WLSVETGK 387
                L              L++N        L  S +   L A     ++ W  +E+  
Sbjct: 591 AEGKKLYS------------LEANSVIHA---LCFSPNRYWLCAATEHGIKIW-DLESKS 634

Query: 388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSV-----------LATSSVDKKVKLW 432
           +++   K         A          + +             L +   D  +++W
Sbjct: 635 IVEDL-KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 41/188 (21%)

Query: 256 AISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314
           A    N   + +A+    + +W++         A      L GH   V  +  + + +  
Sbjct: 389 ATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRR---LTGHSHFVEDVVLSSDGQFA 445

Query: 315 ITASKDGTLRVWNINVRYHLDEDPKTLK-----VLPIPLLDSNGATLQYDRLSLSSDGKI 369
           ++ S DG LR+W++          +        VL +               + S D + 
Sbjct: 446 LSGSWDGELRLWDLAAGVST----RRFVGHTKDVLSV---------------AFSLDNRQ 486

Query: 370 LAATHGS---TLQ-W-LSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS 424
           + +   S   T++ W    E    +    + H   ++C+ ++P      N     + ++S
Sbjct: 487 IVS--ASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP------NTLQPTIVSAS 538

Query: 425 VDKKVKLW 432
            DK VK+W
Sbjct: 539 WDKTVKVW 546

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
            +TL GH   V+ +  S DG   A+   DGV+ +
Sbjct: 554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
            L GH   V  +  SSDG+   +   DG +R+
Sbjct: 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 64  KPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           K    +  +K  N           K      T L +S+DG  L +   DGVIRV
Sbjct: 640 KVDLKAEAEKADNSGPAAT-----KRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 32/268 (11%), Positives = 80/268 (29%), Gaps = 49/268 (18%)

Query: 84  VNTLKGHGDSVTGLCFS--SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141
           ++TL GH   V  + ++    G  LA+   DG + + K ++          ++       
Sbjct: 46  IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH---SASV 102

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS-----TNEGKQQSKLPGPEIKWEHHK 196
            +V +A +    ++        S      +  +S      N       +           
Sbjct: 103 NSVQWAPHEYGPMLLV-----AS-----SDGKVSVVEFKENGTTSPIIIDA--------- 143

Query: 197 VHDKR------AILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL 250
            H         A  T+       GT +      +      + IW   +      +  + L
Sbjct: 144 -HAIGVNSASWAPATIEEDGEHNGTKESRKF-VTGGADNLVKIWKYNSDAQTYVL-ESTL 200

Query: 251 KN-----NMAAISPN---GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV 302
           +         A SP      ++A+ +      +W      +       ++++ +     +
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ---DNEQGPWKKTLLKEEKFPDVL 257

Query: 303 TWLCFAPNSEQIITASKDGTLRVWNINV 330
               ++ +   +  +  D  + +W  N+
Sbjct: 258 WRASWSLSGNVLALSGGDNKVTLWKENL 285

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 255 AAISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA--PN 310
           A +   G+ +A  +  +D  +K++E+      L+        L GH+  V  + +A    
Sbjct: 15  AVMDYYGKRMATCS--SDKTIKIFEVEGETHKLID------TLTGHEGPVWRVDWAHPKF 66

Query: 311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLK-----VLPI---PLLDSNGATLQYDRLS 362
              + + S DG + +W                     V  +   P     G  L    L 
Sbjct: 67  GTILASCSYDGKVMIWKEENGRWSQI--AVHAVHSASVNSVQWAP--HEYGPML----LV 118

Query: 363 LSSDGKILAATHGSTLQWL-SVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVSV- 419
            SSDGK+           +   +           AH   +   +WAP TI    +     
Sbjct: 119 ASSDGKV----------SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168

Query: 420 ----LATSSVDKKVKLW 432
                 T   D  VK+W
Sbjct: 169 ESRKFVTGGADNLVKIW 185

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 33/231 (14%), Positives = 56/231 (24%), Gaps = 81/231 (35%)

Query: 220 TIIASCSEGTDISIWHGKTGKLLGNVD---------------TNQLKNNMAAISPNGRFL 264
            ++   S    +S+   K       +                    ++     +   R  
Sbjct: 114 PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173

Query: 265 AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN---SEQIITASKDG 321
                   VK+W+        V   T    L+GH   V  + ++P       + + S+D 
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLEST----LEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229

Query: 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWL 381
           T  +W                       D+     +          K L           
Sbjct: 230 TCIIWT---------------------QDNEQGPWK----------KTLLKEEK------ 252

Query: 382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
                             +   +W+      GN    VLA S  D KV LW
Sbjct: 253 --------------FPDVLWRASWSL----SGN----VLALSGGDNKVTLW 281

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 38/150 (25%)

Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354
              H   +         +++ T S D T++++ +        + +T K++          
Sbjct: 5   ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEV--------EGETHKLI---------D 47

Query: 355 TLQ--YDRL-----SLSSDGKILAATHGS---TLQ-WLSVETGKVLDTAE-KAHEGEITC 402
           TL      +     +    G ILA+   S    +  W   E G+    A    H   +  
Sbjct: 48  TLTGHEGPVWRVDWAHPKFGTILAS--CSYDGKVMIW-KEENGRWSQIAVHAVHSASVNS 104

Query: 403 MAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           + WAP      ++   +L  +S D KV + 
Sbjct: 105 VQWAP------HEYGPMLLVASSDGKVSVV 128

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPP 141
           V     H + +        GK +AT  +D  I++ +++  + K    L      G  GP 
Sbjct: 2   VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPV 56

Query: 142 TAVAFA 147
             V +A
Sbjct: 57  WRVDWA 62

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 37/230 (16%), Positives = 71/230 (30%), Gaps = 40/230 (17%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-------NMAAISPNGRFLAAAAF 269
               +IAS SE   + +W    G L+  +    +          + A  P  + +  +A 
Sbjct: 92  HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA- 150

Query: 270 TAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
             D  + VW++     G   A    +    H   +  + ++ +   I T+ +D  +RV  
Sbjct: 151 GCDNVILVWDV---GTG---AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVI- 203

Query: 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ-----WLS 382
                    +P+   V+        G           S+GKIL        +     W +
Sbjct: 204 ---------EPRKGTVVAEKDRPHEGTRPV--HAVFVSEGKILTTGFSRMSERQVALWDT 252

Query: 383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
               + L   E      +    + P T         V      D  ++ +
Sbjct: 253 KHLEEPLSLQELDTSSGVLLPFFDPDT-------NIVYLCGKGDSSIRYF 295

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 65.5 bits (160), Expect = 9e-12
 Identities = 40/266 (15%), Positives = 80/266 (30%), Gaps = 55/266 (20%)

Query: 81  PLDVNTLKGHGDSVTGLCFS-SDGKCLATACADGVIRV-----HKLDDASSKSFKFLRIN 134
             +V  + GH   V  + +   +   +A+   D  + V       L     +    L  +
Sbjct: 71  DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130

Query: 135 LPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIK 191
                    VA+   A ++++     S       G +  I       G     L      
Sbjct: 131 ---TKRVGIVAWHPTAQNVLL-----SA------GCDNVILVWDVGTGAAVLTLG----- 171

Query: 192 WEHHK--VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD--T 247
            + H   ++           S  + + DG+ I  SC +   + +   + G ++   D   
Sbjct: 172 PDVHPDTIY-----------SVDW-SRDGALICTSCRDKR-VRVIEPRKGTVVAEKDRPH 218

Query: 248 NQLKNNMAAISPNGRFLAAAAFTAD---VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW 304
              +   A     G+ L           V +W+   +K           Q     S V  
Sbjct: 219 EGTRPVHAVFVSEGKILTTGFSRMSERQVALWD---TKHLEEPLSL---QELDTSSGVLL 272

Query: 305 LCFAPNSEQI-ITASKDGTLRVWNIN 329
             F P++  + +    D ++R + I 
Sbjct: 273 PFFDPDTNIVYLCGKGDSSIRYFEIT 298

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 24/186 (12%)

Query: 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-N 310
           +   A++P    L   A      +  +   K G  +   +V  + GH + V  + + P N
Sbjct: 37  SGFCAVNPKFMALICEASGGGAFLV-LPLGKTG--RVDKNVPLVCGHTAPVLDIAWCPHN 93

Query: 311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-I 369
              I + S+D T+ VW I        D   +  L  P++   G T +   ++     + +
Sbjct: 94  DNVIASGSEDCTVMVWEI-------PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146

Query: 370 LA-ATHGSTLQ-WLSVETGKVLDT-AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426
           L  A   + +  W  V TG  + T     H   I  + W+      G    +++ TS  D
Sbjct: 147 LLSAGCDNVILVW-DVGTGAAVLTLGPDVHPDTIYSVDWSRD----G----ALICTSCRD 197

Query: 427 KKVKLW 432
           K+V++ 
Sbjct: 198 KRVRVI 203

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 36/259 (13%), Positives = 81/259 (31%), Gaps = 54/259 (20%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKC-LATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP- 141
           V TL+GH   V  + +    +  L +A  D VI V    D  + +     + L P   P 
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW---DVGTGA---AVLTLGPDVHPD 177

Query: 142 --TAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHK 196
              +V ++ +   I       + C       +K +      +G   ++   P     H  
Sbjct: 178 TIYSVDWSRDGALIC------TSC------RDKRVRVIEPRKGTVVAEKDRP-----HEG 220

Query: 197 VHDKRAILTLFGASATYGTADGSTIIASCSEGTD--ISIWHGKTGKLLGNVDT--NQLKN 252
                A+            ++G  +    S  ++  +++W  K  +   ++         
Sbjct: 221 TRPVHAVFV----------SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270

Query: 253 NMAAISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN 310
            +    P+   +       D  ++ +EI             +  L    S  +       
Sbjct: 271 LLPFFDPDTNIVYLCGK-GDSSIRYFEITSEA-------PFLHYLSMFSSKESQRGMGYM 322

Query: 311 SEQIITASKDGTLRVWNIN 329
            ++ +  +K    R + ++
Sbjct: 323 PKRGLEVNKCEIARFYKLH 341

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 19/163 (11%), Positives = 42/163 (25%), Gaps = 24/163 (14%)

Query: 81  PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP 140
            +       H D++  + +S DG  + T+C D  +RV    +    +    +     G  
Sbjct: 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVI---EPRKGTVVAEKDRPHEGTR 222

Query: 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDK 200
           P    F      +      +S   + ++  +                 E           
Sbjct: 223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKH--------------LEEPLSLQELDTSS 268

Query: 201 RAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243
             +L  F         D + +       + I  +   +     
Sbjct: 269 GVLLPFF-------DPDTNIVYLCGKGDSSIRYFEITSEAPFL 304

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 72.1 bits (176), Expect = 4e-14
 Identities = 32/290 (11%), Positives = 76/290 (26%), Gaps = 40/290 (13%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
            +K             D       C DG +   +L D+ + +          G  P  ++
Sbjct: 31  NIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIIS 90

Query: 146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILT 205
                  +++   N    ++      K +   E    +++    I    H   +    + 
Sbjct: 91  RGPCNRLLLLYPGN--QITILDSKTNKVLREIEVDSANEI----IYMYGHNEVNTEYFIW 144

Query: 206 LFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLA 265
                       G+    S  + +   +   K+              +   +  +   LA
Sbjct: 145 --------ADNRGTIGFQSYEDDSQYIVHSAKSDVEY----------SSGVLHKDSLLLA 186

Query: 266 AAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325
             +    + V+ +            S       ++ +  + FA N   ++    D T+  
Sbjct: 187 LYSPDGILDVYNLSSPD------QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVC 239

Query: 326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG 375
           +++          K +  L  P               +   GK + A   
Sbjct: 240 FDLR---------KDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN 280

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 67.1 bits (163), Expect = 2e-12
 Identities = 28/235 (11%), Positives = 63/235 (26%), Gaps = 29/235 (12%)

Query: 211 ATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI---SPNGRFLAAA 267
           A       + ++        I+I   KT K+L  ++ +     +        N  +   A
Sbjct: 87  AIISRGPCNRLLLLYPGNQ-ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWA 145

Query: 268 AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
                +                  ++         +      +S  +   S DG L V+N
Sbjct: 146 DNRGTIGFQSYEDDS-------QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198

Query: 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ-W-LSVET 385
           +           +                +   +  + +G  +      T+  + L  + 
Sbjct: 199 L----------SSPDQASS--RFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDV 246

Query: 386 GKVLDTAEKAHEGEITCMAWAP----KTIPMGNQQVSVLATSSVDKKVKLWLAPS 436
           G +        E +   + +      K +   + + + L     DKK K W    
Sbjct: 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDE 301

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 13/147 (8%), Positives = 36/147 (24%), Gaps = 18/147 (12%)

Query: 88  KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFA 147
                 +  + F+ +G  +   C D  +    L                           
Sbjct: 211 VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269

Query: 148 DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLF 207
           D+  +++  ++  +  ++Y + ++    T + +    L       +     D   +    
Sbjct: 270 DSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQS-----DTADFTDMDVV---- 320

Query: 208 GASATYGTADGSTIIASCSEGTDISIW 234
                        I A        +I 
Sbjct: 321 --------CGDGGIAAILKTNDSFNIV 339

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 33/272 (12%), Positives = 80/272 (29%), Gaps = 49/272 (18%)

Query: 84  VNTLKGHGDSVTGLCFS--SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141
           ++TL GH   V  + ++    G  LA+   DG + + K ++          ++       
Sbjct: 48  IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH---SASV 104

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS-----TNEGKQQSKLPGPEIKWEHHK 196
            +V +A +    ++        S      +  +S      N       +           
Sbjct: 105 NSVQWAPHEYGPLLLV-----AS-----SDGKVSVVEFKENGTTSPIIIDA--------- 145

Query: 197 VHDKR------AILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL 250
            H         A  T+       GT +      +      + IW   +      +  + L
Sbjct: 146 -HAIGVNSASWAPATIEEDGEHNGTKESRKF-VTGGADNLVKIWKYNSDAQTYVL-ESTL 202

Query: 251 KN-----NMAAISPN---GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV 302
           +         A SP      +LA+ +      +W      +       ++++ +     +
Sbjct: 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ---DNEQGPWKKTLLKEEKFPDVL 259

Query: 303 TWLCFAPNSEQIITASKDGTLRVWNINVRYHL 334
               ++ +   +  +  D  + +W  N+    
Sbjct: 260 WRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 68.9 bits (169), Expect = 7e-13
 Identities = 39/197 (19%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 255 AAISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE 312
           A +   G+ LA  +  +D  +K++E+      L+        L GH+  V  + +A    
Sbjct: 17  AVLDYYGKRLATCS--SDKTIKIFEVEGETHKLID------TLTGHEGPVWRVDWAHPKF 68

Query: 313 --QIITASKDGTLRVWNINVRYHLDEDPKTLK-----VLPI---PLLDSNGATLQYDRLS 362
              + + S DG + +W                     V  +   P     G  L    L 
Sbjct: 69  GTILASCSYDGKVLIWKEENGRWSQI--AVHAVHSASVNSVQWAP--HEYGPLL----LV 120

Query: 363 LSSDGKILAATHGSTLQWL-SVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVSV- 419
            SSDGK+           +   +           AH   +   +WAP TI    +     
Sbjct: 121 ASSDGKV----------SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 170

Query: 420 ----LATSSVDKKVKLW 432
                 T   D  VK+W
Sbjct: 171 ESRKFVTGGADNLVKIW 187

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 33/231 (14%), Positives = 56/231 (24%), Gaps = 81/231 (35%)

Query: 220 TIIASCSEGTDISIWHGKTGKLLGNVD---------------TNQLKNNMAAISPNGRFL 264
            ++   S    +S+   K       +                    ++     +   R  
Sbjct: 116 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 175

Query: 265 AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ---IITASKDG 321
                   VK+W+        V   T    L+GH   V  + ++P       + + S+D 
Sbjct: 176 VTGGADNLVKIWKYNSDAQTYVLEST----LEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231

Query: 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWL 381
           T  +W  +                                             G   + L
Sbjct: 232 TCIIWTQD------------------------------------------NEQGPWKKTL 249

Query: 382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             E               +   +W+      GN    VLA S  D KV LW
Sbjct: 250 LKEEK---------FPDVLWRASWSL----SGN----VLALSGGDNKVTLW 283

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 36/269 (13%), Positives = 78/269 (28%), Gaps = 64/269 (23%)

Query: 84  VNTLKGHGDSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141
           +     H  SV  + ++    G  L  A +DG + V +  +  + S   +  +       
Sbjct: 94  IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH---AIGV 150

Query: 142 TAVAFADNATSIVVATHNL-------SGCS-----LYMYGEEKAISTNEGKQQSKLPGPE 189
            + ++A          +         +G +     ++ Y             +S L G  
Sbjct: 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS----DAQTYVLESTLEG-- 204

Query: 190 IKWEH-HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWH--GKTGKLLGNVD 246
               H   V D       +  +         + +AS S+     IW    + G     + 
Sbjct: 205 ----HSDWVRD-----VAWSPTVLLR-----SYLASVSQDRTCIIWTQDNEQGPWKKTLL 250

Query: 247 TNQLKNNM---AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT 303
             +   ++   A+ S +G  LA +     V +W+                 L+G      
Sbjct: 251 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK---------------ENLEGK----- 290

Query: 304 WLC-FAPNSEQIITASKDGTLRVWNINVR 331
           W      +     +     T + ++   +
Sbjct: 291 WEPAGEVHQGGGGSGGGGATSKEFDGPCQ 319

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 42/156 (26%)

Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL---------- 344
              H   +         +++ T S D T++++ +       E  K +  L          
Sbjct: 7   ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE-----GETHKLIDTLTGHEGPVWRV 61

Query: 345 ---PIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE-KAHEGEI 400
                      G  L     S S DGK+L         W   E G+    A    H   +
Sbjct: 62  DWAH----PKFGTIL----ASCSYDGKVLI--------W-KEENGRWSQIAVHAVHSASV 104

Query: 401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436
             + WAP      ++   +L  +S D KV +     
Sbjct: 105 NSVQWAP------HEYGPLLLVASSDGKVSVVEFKE 134

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPP 141
           V     H + +        GK LAT  +D  I++ +++  + K    L      G  GP 
Sbjct: 4   VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPV 58

Query: 142 TAVAFA 147
             V +A
Sbjct: 59  WRVDWA 64

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 35/217 (16%), Positives = 64/217 (29%), Gaps = 44/217 (20%)

Query: 84  VNTLKGHGDSVTGLCFSSD---GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP 140
            +TL+GH D V  + +S        LA+   D    +   D+      K L         
Sbjct: 199 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 258

Query: 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDK 200
               +++ +   + ++            G +  +          L      W+       
Sbjct: 259 LWRASWSLSGNVLALS------------GGDNKV---------TL------WKE------ 285

Query: 201 RAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAIS 258
                L G     G         S   G     + G     +  +    N   +N   I 
Sbjct: 286 ----NLEGKWEPAGEVHQGG-GGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIM 340

Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL 295
              RF A+  F A      ++ +KD + K+  S+ +L
Sbjct: 341 KERRFTASYTF-AKFSTGSMLLTKDIVGKSGVSIKRL 376

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 70.7 bits (173), Expect = 3e-13
 Identities = 39/197 (19%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 255 AAISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA--PN 310
           A +   G+ LA  +  +D  +K++E+      L+        L GH+  V  + +A    
Sbjct: 15  AVLDYYGKRLATCS--SDKTIKIFEVEGETHKLID------TLTGHEGPVWRVDWAHPKF 66

Query: 311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLK-----VLPI---PLLDSNGATLQYDRLS 362
              + + S DG + +W                     V  +   P     G  L    L 
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQI--AVHAVHSASVNSVQWAP--HEYGPLL----LV 118

Query: 363 LSSDGKILAATHGSTLQWL-SVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVSV- 419
            SSDGK+           +   +           AH   +   +WAP TI    +     
Sbjct: 119 ASSDGKV----------SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168

Query: 420 ----LATSSVDKKVKLW 432
                 T   D  VK+W
Sbjct: 169 ESRKFVTGGADNLVKIW 185

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 69.2 bits (169), Expect = 1e-12
 Identities = 34/273 (12%), Positives = 80/273 (29%), Gaps = 49/273 (17%)

Query: 84  VNTLKGHGDSVTGLC--FSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141
           ++TL GH   V  +       G  LA+   DG + + K ++          ++       
Sbjct: 46  IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH---SASV 102

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS-----TNEGKQQSKLPGPEIKWEHHK 196
            +V +A +    ++        S      +  +S      N       +           
Sbjct: 103 NSVQWAPHEYGPLLLV-----AS-----SDGKVSVVEFKENGTTSPIIIDA--------- 143

Query: 197 VHDKR------AILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL 250
            H         A  T+       GT +      +      + IW   +      +  + L
Sbjct: 144 -HAIGVNSASWAPATIEEDGEHNGTKESRKF-VTGGADNLVKIWKYNSDAQTYVL-ESTL 200

Query: 251 KN-----NMAAISPN---GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV 302
           +         A SP      +LA+ +      +W     +    K   ++++ +     +
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK---TLLKEEKFPDVL 257

Query: 303 TWLCFAPNSEQIITASKDGTLRVWNINVRYHLD 335
               ++ +   +  +  D  + +W  N+    +
Sbjct: 258 WRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 33/231 (14%), Positives = 56/231 (24%), Gaps = 81/231 (35%)

Query: 220 TIIASCSEGTDISIWHGKTGKLLGNVD---------------TNQLKNNMAAISPNGRFL 264
            ++   S    +S+   K       +                    ++     +   R  
Sbjct: 114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173

Query: 265 AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN---SEQIITASKDG 321
                   VK+W+        V   T    L+GH   V  + ++P       + + S+D 
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLEST----LEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229

Query: 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWL 381
           T  +W  +                                             G   + L
Sbjct: 230 TCIIWTQD------------------------------------------NEQGPWKKTL 247

Query: 382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             E               +   +W+      GN    VLA S  D KV LW
Sbjct: 248 LKEEK---------FPDVLWRASWSL----SGN----VLALSGGDNKVTLW 281

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 38/154 (24%)

Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354
              H   +         +++ T S D T++++ +        + +T K++          
Sbjct: 5   ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEV--------EGETHKLI---------D 47

Query: 355 TLQ--YDR-----LSLSSDGKILAATHGS---TLQ-WLSVETGKVLDTAE-KAHEGEITC 402
           TL            +    G ILA+   S    +  W   E G+    A    H   +  
Sbjct: 48  TLTGHEGPVWRVDWAHPKFGTILAS--CSYDGKVLIW-KEENGRWSQIAVHAVHSASVNS 104

Query: 403 MAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436
           + WAP      ++   +L  +S D KV +     
Sbjct: 105 VQWAP------HEYGPLLLVASSDGKVSVVEFKE 132

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 46/390 (11%), Positives = 104/390 (26%), Gaps = 89/390 (22%)

Query: 84  VNTLKGHGDSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--G 139
           +     H  SV  + ++    G  L  A +DG + V +  +  + S   +          
Sbjct: 92  IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-----AHAI 146

Query: 140 PPTAVAFADNATSIVVATHNL-------SGCS-----LYMYGEEKAISTNEGKQQSKLPG 187
              + ++A          +         +G +     ++ Y             +S L G
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS----DAQTYVLESTLEG 202

Query: 188 PEIKWEH-HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWH--GKTGKLLGN 244
                 H   V D       +  +         + +AS S+     IW    + G     
Sbjct: 203 ------HSDWVRD-----VAWSPTVLLR-----SYLASVSQDRTCIIWTQDNEQGPWKKT 246

Query: 245 VDTNQLKNNM---AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA 301
           +   +   ++   A+ S +G  LA +     V +W+                 L+G    
Sbjct: 247 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK---------------ENLEGKWEP 291

Query: 302 VTWLCFAPNSEQIITASKDGTLRVWNINVRY-------HLDEDPKTLKVLPIPLLDSNGA 354
              +          +     T + ++   +          +++    K++      +   
Sbjct: 292 AGEVHQGGGG----SGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTA-- 345

Query: 355 TLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKV------LDTAEKAHEGEITCMAWAP 407
              Y     S+   +L     G +   +     ++       D        ++T  A   
Sbjct: 346 --SYTFAKFSTGSMLLTKDIVGKSGVSIKRLPTELQRKFLFDDVYLDKEIEKVTIEARKS 403

Query: 408 KTIPM-----GNQQVSVLATSSVDKKVKLW 432
              P         + ++           LW
Sbjct: 404 NPYPQISESSLLFKDALDYMEKTSSDYNLW 433

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 47.3 bits (112), Expect = 8e-06
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--GPP 141
           V     H + +        GK LAT  +D  I++ +++  + K    L      G  GP 
Sbjct: 2   VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPV 56

Query: 142 TAVAFA 147
             V +A
Sbjct: 57  WRVDWA 62

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 69.8 bits (171), Expect = 4e-13
 Identities = 55/381 (14%), Positives = 116/381 (30%), Gaps = 103/381 (27%)

Query: 72  DKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCL-ATACADGVIRV-----HKLDDASS 125
                     +++     H   V    +     C+ AT      + V     H      S
Sbjct: 109 FGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS 168

Query: 126 KSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQ 182
              +              +++  N    +     LS        ++  I     N   ++
Sbjct: 169 GECQPDLRLRGHQKEGYGLSWNPNLNGYL-----LSA------SDDHTICLWDINATPKE 217

Query: 183 SKLPGPEIKWEHHK--VHDKRAILTLFGASATYGTA---DGSTIIASCSEGTDISIW--- 234
            ++   +  +  H   V D                A      ++  S ++   + IW   
Sbjct: 218 HRVIDAKNIFTGHTAVVED---------------VAWHLLHESLFGSVADDQKLMIWDTR 262

Query: 235 HGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVKAVTSV 292
           +  T K    VD +  + N  + +P   F+ A   +AD  V +W++   K         +
Sbjct: 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG-SADKTVALWDLRNLK-------LKL 314

Query: 293 MQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS 351
              + HK  +  + ++P++E I+ ++  D  L VW+++     ++  +  +  P  LL  
Sbjct: 315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI-GEEQSTEDAEDGPPELL-- 371

Query: 352 NGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
                                 HG                    H  +I+  +W P   P
Sbjct: 372 --------------------FIHG-------------------GHTAKISDFSWNPN-EP 391

Query: 412 MGNQQVSVLATSSVDKKVKLW 432
                  ++ + S D  +++W
Sbjct: 392 W------IICSVSEDNIMQVW 406

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 39/281 (13%), Positives = 79/281 (28%), Gaps = 82/281 (29%)

Query: 83  DVNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141
             N   GH   V  + +    +    +   D  + +   D  ++ + K            
Sbjct: 223 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW--DTRNNNTSKPSHTVDAHTAEV 280

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS---TNEGKQQSKLPGPEIKWEHHKVH 198
             ++F   +  I+      +G        +K ++       K           +E H   
Sbjct: 281 NCLSFNPYSEFILA-----TG------SADKTVALWDLRNLKL------KLHSFESH--- 320

Query: 199 DKRAILTLFGASATYGTA---DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA 255
            K  I  +                TI+AS      + +W                     
Sbjct: 321 -KDEIFQV---------QWSPHNETILASSGTDRRLHVW--------------------- 349

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM-QLKGHKSAVTWLCFAPNSE-Q 313
                           D+       S +        ++    GH + ++   + PN    
Sbjct: 350 ----------------DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 393

Query: 314 IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354
           I + S+D  ++VW +    + DE+P     +P   L++N A
Sbjct: 394 ICSVSEDNIMQVWQMAENVYNDEEP----EIPASELETNTA 430

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 70.3 bits (171), Expect = 5e-13
 Identities = 32/251 (12%), Positives = 55/251 (21%), Gaps = 34/251 (13%)

Query: 89  GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFAD 148
           G         F      LA A   G + ++                L        + F  
Sbjct: 15  GMSSKPIAAAFDFTQNLLAIATVTGEVHIY---GQQQVEVVIK---LEDRSAIKEMRFVK 68

Query: 149 NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFG 208
               +V+   +              +S    K  + +  P              +L    
Sbjct: 69  GIYLVVINAKD----------TVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLI--- 115

Query: 209 ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA 268
                G  +GS I+         S       K                 +P        +
Sbjct: 116 -----GLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170

Query: 269 FTADVKVWEI----------VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
           +      + +                      S    +     V    + PNS  IIT  
Sbjct: 171 YEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230

Query: 319 KDGTLRVWNIN 329
           +D +L  W+ N
Sbjct: 231 EDNSLVFWDAN 241

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 64.9 bits (157), Expect = 2e-11
 Identities = 47/360 (13%), Positives = 112/360 (31%), Gaps = 38/360 (10%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFK---FLRINLPPGG--- 139
           T       +T +   +    +     +G + V+ +D     SFK     + +  P     
Sbjct: 93  TTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152

Query: 140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHD 199
           P  ++ +       V+ ++       Y   E +   +   +     PG +   + ++   
Sbjct: 153 PIVSIQWNPRDIGTVLISYE-YVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRT 211

Query: 200 KRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP 259
            + I +L+         +   II    + + +  W   +G ++      + + N     P
Sbjct: 212 PKVIQSLY-------HPNSLHIITIHEDNS-LVFWDANSGHMIMARTVFETEIN----VP 259

Query: 260 NGRFLAAAAF--TADVKV-WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
              ++  ++       KV W    + +     ++     +G   ++T +         IT
Sbjct: 260 QPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT 319

Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
           + +       N          PK +K+ P+P           + L +       A  H  
Sbjct: 320 SYEGMKNYYAN----------PKQMKIFPLP-----TNVPIVNILPIPRQSPYFAGCHNP 364

Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436
            L  L +  G++      +         + P+ +       +    +SV  K+ L    +
Sbjct: 365 GLILLILGNGEIETMLYPSGIFTDKASLF-PQNLSWLRPLATTSMAASVPNKLWLGALSA 423

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 61.4 bits (148), Expect = 3e-10
 Identities = 39/314 (12%), Positives = 84/314 (26%), Gaps = 37/314 (11%)

Query: 83  DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDAS---SKSFKFLRINLPPGG 139
              T +     V    +  +   + T   D  +     +      +++     IN+P   
Sbjct: 203 SEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPD 262

Query: 140 PPTAVAFADNATSIVV-------------------ATHNLSGCSLYMYGEEKAISTNEGK 180
                +      S V                    +  +    ++   G     S    +
Sbjct: 263 YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322

Query: 181 QQSKL---PGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK 237
                   P     +          IL +   S  +       +I       +I      
Sbjct: 323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP 382

Query: 238 TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297
           +G        +    N++ + P      + A +   K+W    S       +     LKG
Sbjct: 383 SGIFT--DKASLFPQNLSWLRPLAT--TSMAASVPNKLWLGALSAAQNKDYL-----LKG 433

Query: 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ 357
                     A      IT   +G++R+++ +   H D        + +    +    L 
Sbjct: 434 GVRTKRQKLPAEYGTAFITGHSNGSVRIYDAS---HGDIQDNASFEVNLSRTLNKAKELA 490

Query: 358 YDRLSLSSDGKILA 371
            D++S +++   LA
Sbjct: 491 VDKISFAAETLELA 504

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 68.9 bits (169), Expect = 9e-13
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 59/226 (26%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK---NNMAAISPNGRFLAAAAFTADV 273
            G+ I  S S+   + +W   TGK L       L      + +       + + +    +
Sbjct: 128 CGNRI-VSGSDDNTLKVWSAVTGKCL-----RTLVGHTGGVWSSQMRDNIIISGSTDRTL 181

Query: 274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333
           KVW     + G          L GH S V  +       ++++ S+D TLRVW+I     
Sbjct: 182 KVWNA---ETGECIHT-----LYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDI----- 226

Query: 334 LDEDPKTLKVL-----PIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQ-WLSVETG 386
             E  + L VL      +                +  DG+ +    +   ++ W   ET 
Sbjct: 227 --ETGQCLHVLMGHVAAV--------------RCVQYDGRRVVSGAYDFMVKVW-DPETE 269

Query: 387 KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             L T +  H   +  + +    +           + S+D  +++W
Sbjct: 270 TCLHTLQ-GHTNRVYSLQFDGIHV----------VSGSLDTSIRVW 304

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 55/223 (24%)

Query: 220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLK---NNMAAISPNGRFLAAAAFTADVKVW 276
             + S S    + +W  +TG+ L       L      +  +  +GR + + A+   VKVW
Sbjct: 210 KRVVSGSRDATLRVWDIETGQCLH-----VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 264

Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
           +    +       T +  L+GH + V       +   +++ S D ++RVW          
Sbjct: 265 DP---ETE-----TCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVW---------- 304

Query: 337 DPKTLKVLPIPLLDSNGATLQ-YDRL--SLSSDGKILA-ATHGSTLQ-WLSVETGKVLDT 391
           D +T   +          TL  +  L   +     IL      ST++ W  ++TG+ L T
Sbjct: 305 DVETGNCI---------HTLTGHQSLTSGMELKDNILVSGNADSTVKIW-DIKTGQCLQT 354

Query: 392 --AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
                 H+  +TC+ +    +           TSS D  VKLW
Sbjct: 355 LQGPNKHQSAVTCLQFNKNFV----------ITSSDDGTVKLW 387

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 47/148 (31%)

Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLK-----VLPIPLL 349
           LKGH   V   C      +I++ S D TL+VW+      L    +TL      V      
Sbjct: 114 LKGHDDHV-ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL----RTLVGHTGGVW----- 163

Query: 350 DSNGATLQY--DRL-SLSSDG--KILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMA 404
                + Q   + + S S+D   K+          W + ETG+ + T    H   + CM 
Sbjct: 164 -----SSQMRDNIIISGSTDRTLKV----------W-NAETGECIHTLY-GHTSTVRCMH 206

Query: 405 WAPKTIPMGNQQVSVLATSSVDKKVKLW 432
              K +           + S D  +++W
Sbjct: 207 LHEKRV----------VSGSRDATLRVW 224

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQL-KNNMAAISPNGRFLAAAAFTADVKVWEIV 279
           I+ S +  + + IW  KTG+ L  +      ++ +  +  N  F+  ++    VK+W++ 
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL- 389

Query: 280 YSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT----LRVWNINV 330
             K G        ++  G    V  +  +         S++GT    L V + +V
Sbjct: 390 --KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 25/158 (15%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
           DG  +  S S  T I +W  +TG  +  +  +Q  +  + +      L +    + VK+W
Sbjct: 288 DGIHV-VSGSLDTSIRVWDVETGNCIHTLTGHQ--SLTSGMELKDNILVSGNADSTVKIW 344

Query: 277 EIVYSKDGLVKAVTSVMQLKG---HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333
           +        +K    +  L+G   H+SAVT  C   N   +IT+S DGT+++W++     
Sbjct: 345 D--------IKTGQCLQTLQGPNKHQSAVT--CLQFNKNFVITSSDDGTVKLWDL----- 389

Query: 334 LDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371
             +  + ++ L     +S G+     R+  S+   + A
Sbjct: 390 --KTGEFIRNLVTL--ESGGSGGVVWRIRASNTKLVCA 423

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 11/71 (15%)

Query: 57  ISKKSHSKPHSHSHGDKDQNKRHHPLDVN----------TLKGHGDSVTGLCFSSDGKCL 106
           I ++   KP       K    R H +D N           LKGH D V   C    G  +
Sbjct: 74  IKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVIT-CLQFCGNRI 132

Query: 107 ATACADGVIRV 117
            +   D  ++V
Sbjct: 133 VSGSDDNTLKV 143

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 46/253 (18%), Positives = 80/253 (31%), Gaps = 70/253 (27%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLL---------GNVDTNQLKNNMAAISPN--GRFLA 265
            G+ + A+CS    + I+  + G  +         G V          A +    G  LA
Sbjct: 24  YGTRL-ATCSSDRSVKIFDVRNGGQILIADLRGHEGPV-------WQVAWAHPMYGNILA 75

Query: 266 AAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE--QIITASKDGTL 323
           + ++   V +W     ++G         +  GH S+V  +C+AP+     +   S DG +
Sbjct: 76  SCSYDRKVIIWRE---ENG---TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129

Query: 324 RVWNIN--------------------VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363
            +                        V +     P +L   P     +          S 
Sbjct: 130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRF----ASG 185

Query: 364 SSDG--KILAATHGSTLQWLSVETGKVLDTAE--KAHEGEITCMAWAPKTIPMGNQQVSV 419
             D   K+          W   E        +  +AH   +  +AWAP          S 
Sbjct: 186 GCDNLIKL----------W-KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT----ST 230

Query: 420 LATSSVDKKVKLW 432
           +A+ S D +V +W
Sbjct: 231 IASCSQDGRVFIW 243

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 37/206 (17%), Positives = 62/206 (30%), Gaps = 58/206 (28%)

Query: 255 AAISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE 312
           A +   G  LA  +  +D  VK++++      L+        L+GH+  V  + +A    
Sbjct: 19  AQMDYYGTRLATCS--SDRSVKIFDVRNGGQILIA------DLRGHEGPVWQVAWAHPMY 70

Query: 313 --QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPI-------------PLLDSNGATLQ 357
              + + S D  + +W         E+    K                 P     G  L 
Sbjct: 71  GNILASCSYDRKVIIWRE-------ENGTWEKSHEHAGHDSSVNSVCWAP--HDYGLIL- 120

Query: 358 YDRLSLSSDG--KILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQ 415
                 SSDG   +L  T     +   +            H      ++WAP  +P    
Sbjct: 121 ---ACGSSDGAISLLTYTGEGQWEVKKINNA---------HTIGCNAVSWAPAVVPGSLI 168

Query: 416 QVSV---------LATSSVDKKVKLW 432
                         A+   D  +KLW
Sbjct: 169 DHPSGQKPNYIKRFASGGCDNLIKLW 194

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 37/286 (12%), Positives = 84/286 (29%), Gaps = 57/286 (19%)

Query: 84  VNTLKGHGDSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG--G 139
           +  L+GH   V  + ++    G  LA+   D  + + + ++ + +           G   
Sbjct: 50  IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA-----GHDS 104

Query: 140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS----TNEGKQQSKLPGPEIKWEHH 195
              +V +A +   +++A       S      + AIS    T EG+ + K          H
Sbjct: 105 SVNSVCWAPHDYGLILAC-----GS-----SDGAISLLTYTGEGQWEVKKI-----NNAH 149

Query: 196 KV--------HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT 247
            +                +   S      +     AS      I +W  +          
Sbjct: 150 TIGCNAVSWAPAVVPGSLIDHPSGQ--KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK 207

Query: 248 NQLKN-----NMAAISPN----GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298
             L+         A +P+       +A+ +    V +W    +             L   
Sbjct: 208 --LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL----LHKF 261

Query: 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL 344
              V  + ++  +  +  +  D  + +W  +    +D     +  +
Sbjct: 262 NDVVWHVSWSITANILAVSGGDNKVTLWKES----VDGQWVCISDV 303

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 44/160 (27%)

Query: 289 VTSVMQ--LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL-- 344
           + SV+      H+  +          ++ T S D +++++++      +     +  L  
Sbjct: 1   MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR-----NGGQILIADLRG 55

Query: 345 -----------PIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE 393
                              G  L     S S D K++         W   E G    + E
Sbjct: 56  HEGPVWQVAWAH----PMYGNIL----ASCSYDRKVII--------W-REENGTWEKSHE 98

Query: 394 -KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
              H+  +  + WAP      +    +LA  S D  + L 
Sbjct: 99  HAGHDSSVNSVCWAP------HDYGLILACGSSDGAISLL 132

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 32/237 (13%), Positives = 58/237 (24%), Gaps = 89/237 (37%)

Query: 220 TIIASCSEGTDISIWHGKTGKLLGNVDT--------------------NQLKNNMAAISP 259
            I+A  S    IS+                                  + + +       
Sbjct: 118 LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN 177

Query: 260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ----II 315
             +  A+      +K+W+         +       L+ H   V  + +AP+       I 
Sbjct: 178 YIKRFASGGCDNLIKLWKEEEDGQWKEEQK-----LEAHSDWVRDVAWAPSIGLPTSTIA 232

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG 375
           + S+DG + +W                                                 
Sbjct: 233 SCSQDGRVFIWT--------------------------------------------CDDA 248

Query: 376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           S+  W      K+L          +  ++W+       N    +LA S  D KV LW
Sbjct: 249 SSNTWS----PKLL----HKFNDVVWHVSWSI----TAN----ILAVSGGDNKVTLW 289

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 40/241 (16%), Positives = 67/241 (27%), Gaps = 37/241 (15%)

Query: 84  VNTLKGHGDSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141
            +   GH  SV  +C++    G  LA   +DG I +  L       ++  +IN       
Sbjct: 96  SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL--LTYTGEGQWEVKKINNAHTIGC 153

Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKR 201
            AV++A            +   S       K  ++       KL      W+  +    +
Sbjct: 154 NAVSWAPAVVP----GSLIDHPSGQKPNYIKRFASGGCDNLIKL------WKEEEDGQWK 203

Query: 202 AILTLFG--------ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN- 252
               L          A A       ST IASCS+   + IW               L   
Sbjct: 204 EEQKLEAHSDWVRDVAWAPSIGLPTST-IASCSQDGRVFIWTCDDAS-SNTWSPKLLHKF 261

Query: 253 ----NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
                  + S     LA +     V +W+               + +         +  +
Sbjct: 262 NDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQ--------WVCISDVNKGQGSVSAS 313

Query: 309 P 309
            
Sbjct: 314 V 314

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
               H D +        G  LAT  +D  +++
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKI 39

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 42/228 (18%), Positives = 79/228 (34%), Gaps = 60/228 (26%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK---NNMAAISPNGRFLAAAAFTADV 273
           D   I  S      I IW   T +         L     ++  +  + R +   +  + V
Sbjct: 142 DDQKI-VSGLRDNTIKIWDKNTLECKR-----ILTGHTGSVLCLQYDERVIITGSSDSTV 195

Query: 274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333
           +VW++     G +        L  H  AV  L    N+  ++T SKD ++ VW++     
Sbjct: 196 RVWDV---NTGEMLNT-----LIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASP-- 243

Query: 334 LDEDPKTLKVL-----PIPLLDSNGATLQYDRLSLSSDGKILAATHGS---TLQ-WLSVE 384
              D    +VL      +                +  D K + +   S   T++ W +  
Sbjct: 244 --TDITLRRVLVGHRAAV--------------NVVDFDDKYIVS--ASGDRTIKVW-NTS 284

Query: 385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           T + + T    H+  I C+ +  + +           + S D  ++LW
Sbjct: 285 TCEFVRTLN-GHKRGIACLQYRDRLV----------VSGSSDNTIRLW 321

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 35/232 (15%), Positives = 74/232 (31%), Gaps = 59/232 (25%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA---AISPNGRFLAAAAFTADV 273
           +   +  +CS+   I++W   +   +       L  + A    +  + +++ +A+    +
Sbjct: 222 NNGMM-VTCSKDRSIAVWDMASPTDITLRRV--LVGHRAAVNVVDFDDKYIVSASGDRTI 278

Query: 274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333
           KVW               V  L GHK  +   C       +++ S D T+R+W       
Sbjct: 279 KVWNT---STC-----EFVRTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLW------- 321

Query: 334 LDEDPKTLKVLPIPLLDSNGATLQ-YDRL--SLSSDGKILA-ATHGSTLQ-WLSVETGKV 388
              D +    L           L+ ++ L   +  D K +    +   ++ W  +     
Sbjct: 322 ---DIECGACL---------RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW-DLVAALD 368

Query: 389 LDTAE--------KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
                          H G +  + +    I           +SS D  + +W
Sbjct: 369 PRAPAGTLCLRTLVEHSGRVFRLQFDEFQI----------VSSSHDDTILIW 410

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 12/117 (10%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK---NNMAAISPNGRFLAAAAFTADV 273
               +  S S    I +W  + G  L       L+     +  I  + + + + A+   +
Sbjct: 305 RDRLV-VSGSSDNTIRLWDIECGACLR-----VLEGHEELVRCIRFDNKRIVSGAYDGKI 358

Query: 274 KVWEIVYSKDGLVKAVTSVMQ-LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
           KVW++V + D    A T  ++ L  H   V       +  QI+++S D T+ +W+  
Sbjct: 359 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVF--RLQFDEFQIVSSSHDDTILIWDFL 413

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 51/186 (27%)

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
            +  + + + +      +K+W+         K +     L GH  +V  LC   +   II
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDK---NTLECKRI-----LTGHTGSV--LCLQYDERVII 187

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ--YDR-LSLSSDGKILAA 372
           T S D T+RVW++           T ++L          TL    +  L L  +  ++  
Sbjct: 188 TGSSDSTVRVWDV----------NTGEML---------NTLIHHCEAVLHLRFNNGMMVT 228

Query: 373 THGS---TLQ-WLSVETGKVLDTAE--KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426
              S   ++  W  + +   +        H   +  + +  K I           ++S D
Sbjct: 229 --CSKDRSIAVW-DMASPTDITLRRVLVGHRAAVNVVDFDDKYI----------VSASGD 275

Query: 427 KKVKLW 432
           + +K+W
Sbjct: 276 RTIKVW 281

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 41/146 (28%)

Query: 295 LKGHKSAVTW-LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNG 353
           +           C   + ++I++  +D T+++W          D  TL+           
Sbjct: 126 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIW----------DKNTLECK--------- 166

Query: 354 ATLQ--YDR-LSLSSDGKILAATHGS---TLQ-WLSVETGKVLDTAEKAHEGEITCMAWA 406
             L       L L  D +++    GS   T++ W  V TG++L+T    H   +  + + 
Sbjct: 167 RILTGHTGSVLCLQYDERVIIT--GSSDSTVRVW-DVNTGEMLNTLI-HHCEAVLHLRFN 222

Query: 407 PKTIPMGNQQVSVLATSSVDKKVKLW 432
              +           T S D+ + +W
Sbjct: 223 NGMM----------VTCSKDRSIAVW 238

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 46  HQKKPTKPSQPISKKSHSKPHSHSHGDK-DQNKRHHPLDVNTLKGHGDSVTG-LCFSSDG 103
             K P   + P S      P      +  + N R     +  +    ++  G  C   D 
Sbjct: 84  KNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDD 143

Query: 104 KCLATACADGVIRV 117
           + + +   D  I++
Sbjct: 144 QKIVSGLRDNTIKI 157

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 66.3 bits (161), Expect = 6e-12
 Identities = 27/234 (11%), Positives = 66/234 (28%), Gaps = 29/234 (12%)

Query: 215 TADGSTIIASCSEGTDISIWHGKTGKLL----GNVDTNQLKNNMAAISPNGRFLAAAAFT 270
           + DGS + A       I  +  ++           D           +   +   ++   
Sbjct: 13  SRDGSLVFAI--IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENE 70

Query: 271 ADVKVWEIVYSKDGLVKAVTS---VMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVW 326
            + K  +          A       +      S +  L    +  ++I  A  D +L V+
Sbjct: 71  NENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVF 130

Query: 327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS----TLQWLS 382
           +++                + L      + + + +S++ D   +          ++   S
Sbjct: 131 DVD----------KTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS 180

Query: 383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436
           +   K        H   +T +          +     + TS  D+ +K+   P 
Sbjct: 181 IPEEKFTQEPILGHVSMLTDVHLIKD-----SDGHQFIITSDRDEHIKISHYPQ 229

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 64.3 bits (156), Expect = 2e-11
 Identities = 42/299 (14%), Positives = 84/299 (28%), Gaps = 72/299 (24%)

Query: 32  SEIKSIAKTELEPDHQKKPTKPSQPISKKSHSKPHSHSHGDKDQNKRHHPLDVNTLKGHG 91
                  K +   +   K  +     ++  + K  S+      +     P          
Sbjct: 43  KWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIY 102

Query: 92  DSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNA 150
             +  L  +SD  + +A A +D  + V  +D  S    K  +        P A++ A++ 
Sbjct: 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDD 161

Query: 151 TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGAS 210
           T++++A            G+  +I  N   ++     P      H      ++LT     
Sbjct: 162 TTVIIADKF---------GDVYSIDINSIPEEKFTQEP---ILGHV-----SMLTDVHLI 204

Query: 211 ATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT 270
                +DG   I +      I I H     ++                            
Sbjct: 205 K---DSDGHQFIITSDRDEHIKISHYPQCFIVDKW------------------------- 236

Query: 271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
                                   L GHK  V+ +C   +   +++A  D  +  W+  
Sbjct: 237 ------------------------LFGHKHFVSSICCGKDY-LLLSAGGDDKIFAWDWK 270

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 31/223 (13%)

Query: 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD--V 273
            + +  + S    +            LG         N+  ++ +   L A A  +D  +
Sbjct: 70  ENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLR-LTSDESRLIACA-DSDKSL 127

Query: 274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333
            V+++    D   K V  + +          +  A +   +I A K G +   +IN    
Sbjct: 128 LVFDV----DKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN---- 179

Query: 334 LDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK----ILAATHGSTLQWLSVETGKVL 389
                   K    P+L           + L  D      I+ +     ++        ++
Sbjct: 180 ---SIPEEKFTQEPILGHVSMLTD---VHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233

Query: 390 DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           D     H+  ++ +               +L ++  D K+  W
Sbjct: 234 DKWLFGHKHFVSSICCGKD---------YLLLSAGGDDKIFAW 267

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 52/333 (15%), Positives = 94/333 (28%), Gaps = 45/333 (13%)

Query: 83  DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142
            V   +   D ++ +        L     DG + V+K D  +        +      P  
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK--HPLL 60

Query: 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRA 202
              F DN    +       G      GE   +          L        ++       
Sbjct: 61  CCNFIDNTDLQIY-----VGTV---QGEILKVDLIGSPSFQAL-------TNN--EANLG 103

Query: 203 ILTLFGASATYGTADGSTIIASCSE-GTDISIWHGKTGKLLG------NVDTNQLKNNMA 255
           I  +           G   + + S  G  I +   +            N +  ++KN + 
Sbjct: 104 ICRIC--------KYGDDKLIAASWDGL-IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF 154

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
            +  N   L      + V+ + +   +D       S   LK     V         E   
Sbjct: 155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES--GLKYQIRDVA--LLPKEQEGYA 210

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD--RLSLSSDGKILAAT 373
            +S DG + V   + +   D +           L+     L Y    +  S   K L  T
Sbjct: 211 CSSIDGRVAVEFFDDQ-GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL-YT 268

Query: 374 HGS--TLQWLSVETGKVLDTAEKAHEGEITCMA 404
            GS   +   +++T K +    K +E  +  +A
Sbjct: 269 AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 31/225 (13%), Positives = 72/225 (32%), Gaps = 35/225 (15%)

Query: 219 STIIASCSEGTDISIWH----GKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVK 274
            +++   S    ++++      K   LL ++           I      +       ++ 
Sbjct: 23  KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82

Query: 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL-CFAPNSEQIITASKDGTLRVWNINVRYH 333
             +++ S         S   L  +++ +          +++I AS DG + V        
Sbjct: 83  KVDLIGSP--------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI------- 127

Query: 334 LDEDPKTLKVLPIPLLDSNGATLQYDR--LSLSSDGKILA-ATHGSTLQWLSVETGKVL- 389
              DP+      I + + N    +      ++ ++   L    + S +QW  +   +   
Sbjct: 128 ---DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 390 -DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433
               E   + +I  +A  P             A SS+D +V +  
Sbjct: 185 GTIEESGLKYQIRDVALLP---KEQEG----YACSSIDGRVAVEF 222

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 14/134 (10%), Positives = 38/134 (28%), Gaps = 21/134 (15%)

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360
            ++ +   P+   ++  S DG+L V+          D +   V  +  L      L    
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKF--------DIQAKNVDLLQSLRYKHPLL---C 61

Query: 361 LSLSSDGKILAATHGS--TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS 418
            +   +  +          +  + +            +E  +             ++   
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN-NEANLGICRICK---YGDDK--- 114

Query: 419 VLATSSVDKKVKLW 432
            L  +S D  +++ 
Sbjct: 115 -LIAASWDGLIEVI 127

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 37/323 (11%), Positives = 79/323 (24%), Gaps = 54/323 (16%)

Query: 89  GHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFA 147
            +   +    F  +    +      G I     D   S SF+ L  N             
Sbjct: 54  RYKHPLLCCNFIDNTDLQIYVGTVQGEILKV--DLIGSPSFQALTNN---EANLGICRIC 108

Query: 148 DNATSIVVATHNLSG---CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAIL 204
                 ++     +      +      + I                   + KV +K   +
Sbjct: 109 KYGDDKLI-----AASWDGLI------EVIDPRNYGDGVIAVKNLNSN-NTKVKNKIFTM 156

Query: 205 TLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFL 264
               +    G  +            D +    +   L   +       ++A +       
Sbjct: 157 DTNSSRLIVGMNNSQVQWFRLPLCEDDN-GTIEESGLKYQI------RDVALLPKEQEGY 209

Query: 265 AAAAFTADVKVWEIVYSKDGLV-------KAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317
           A ++    V V       D          +     ++       V  + F+P  + + TA
Sbjct: 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA 269

Query: 318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGST 377
             DG +  WN+  R  +    K          + +          ++    IL       
Sbjct: 270 GSDGIISCWNLQTRKKIKNFAK---------FNEDSVV------KIACSDNILCLATSDD 314

Query: 378 LQWLSVETGKVLDTAEKAHEGEI 400
               + +T   +D   + +   I
Sbjct: 315 ----TFKTNAAIDQTIELNASSI 333

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 64.7 bits (157), Expect = 1e-11
 Identities = 40/367 (10%), Positives = 89/367 (24%), Gaps = 73/367 (19%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
           +       + VT   F+ D  CL  +       ++ +            I        + 
Sbjct: 12  IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP-------VAHIMSQEMRHLSK 63

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           V        +   T       ++                                 K+ +
Sbjct: 64  VRMLHRTNYVAFVTGVKEVVHIWD-----------------------------DVKKQDV 94

Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ-----LKNNMAAIS 258
             +   +           I        IS++           D          N +   S
Sbjct: 95  SRIKVDAPVKDLFLSREFIVVSYGDV-ISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYS 153

Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS---VMQLKGHKSAVTWLCFAPNSEQII 315
                         ++      ++D  V+        + +K H + +  +     S+ + 
Sbjct: 154 NEFNLGQIHIT--KLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211

Query: 316 TASKDGTL-RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT- 373
           T S+DGT+ RV+            +   ++       + A +    +  S+DG  LA   
Sbjct: 212 TCSQDGTIIRVF----------KTEDGVLVREFRRGLDRADVV--DMKWSTDGSKLAVVS 259

Query: 374 -HGSTLQWLSVETGKVLDTAE-------KAHEGEITCMAWAPKTIPMGNQQVSVLATSSV 425
              +   +  +   +             K  + E +   +              +A  S 
Sbjct: 260 DKWTLHVF-EIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVR--GCKIAWISE 316

Query: 426 DKKVKLW 432
              V +W
Sbjct: 317 SSLVVVW 323

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 62.7 bits (152), Expect = 5e-11
 Identities = 37/268 (13%), Positives = 79/268 (29%), Gaps = 34/268 (12%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
           V+ +K     V  L  S +           VI V K  +   +    +R           
Sbjct: 94  VSRIKVDA-PVKDLFLSREF---IVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGL 149

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           + +++      +    L         ++         +   +            H     
Sbjct: 150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA----------HTNPIK 199

Query: 204 LTLFGASATYGTADGSTIIASCSE-GTDISIWHGKTGKLLGNV--DTNQLKNNMAAISPN 260
           +                ++A+CS+ GT I ++  + G L+       ++        S +
Sbjct: 200 MVRL-------NRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTD 251

Query: 261 GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA------PNSEQI 314
           G  LA  +    + V+EI   +D    A+   + +K  +S  +   F           +I
Sbjct: 252 GSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI 311

Query: 315 ITASKDGTLRVWNIN---VRYHLDEDPK 339
              S+   + VW        + +  D +
Sbjct: 312 AWISESSLVVVWPHTRMIETFKVVFDDE 339

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 28/189 (14%), Positives = 59/189 (31%), Gaps = 23/189 (12%)

Query: 50  PTKPSQPISKKSHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATA 109
                  I         S +  D+   ++        +K H + +  +  +     +AT 
Sbjct: 154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213

Query: 110 CADG-VIRVHKLDDASSKSFKFLRINLPPGGPP---TAVAFADNATSIVVATHNLSGCSL 165
             DG +IRV K +D      +F R     G        + ++ + + + V +      +L
Sbjct: 214 SQDGTIIRVFKTEDG-VLVREFRR-----GLDRADVVDMKWSTDGSKLAVVSDK---WTL 264

Query: 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC 225
           +++     I  ++  ++  L G                              G   IA  
Sbjct: 265 HVF----EIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH-----VRGC-KIAWI 314

Query: 226 SEGTDISIW 234
           SE + + +W
Sbjct: 315 SESSLVVVW 323

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 38/314 (12%), Positives = 89/314 (28%), Gaps = 57/314 (18%)

Query: 91  GDSVTGLCFSSDGKCLATACADGVIR-----VHKLDDASSKSFKFLRINLPPGGPPTAVA 145
           G     + +S     L  A +          V++LD  + +  +     +     P    
Sbjct: 40  GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ----AIHNDLKPFGAT 95

Query: 146 FADNATSIVVA---THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHD-KR 201
             +   ++         ++           AI    G+ + +L   + K          R
Sbjct: 96  INNTTQTLWFGNTVNSAVT-----------AIDAKTGEVKGRLVLDDRKRTEEVRPLQPR 144

Query: 202 AILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNG 261
            ++     +  Y +  G          + I +  G   KL   +      +   A+   G
Sbjct: 145 ELVADDATNTVYISGIGK--------ESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196

Query: 262 RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI-ITASKD 320
           + L       ++     + + D  + +   ++   G +     +      ++  IT SK 
Sbjct: 197 KRLYTTNADGELIT---IDTADNKILSRKKLLD-DGKEHFFINISLDTARQRAFITDSKA 252

Query: 321 GTLRVWNINVRYHLDEDPKTLKVL-PIPLLDSNGATLQYDRLSLSSDGKILAATHG--ST 377
             + V           D +   +L  +   +S            +        TH     
Sbjct: 253 AEVLVV----------DTRNGNILAKVAAPESLAVL-------FNPARNEAYVTHRQAGK 295

Query: 378 LQWLSVETGKVLDT 391
           +  +  ++ KV+ T
Sbjct: 296 VSVIDAKSYKVVKT 309

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 29/189 (15%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
              ++  G   TGL   S+GK L T  ADG   +  +D A +K     ++ L  G     
Sbjct: 177 KTAIQNTGKMSTGLALDSEGKRLYTTNADG--ELITIDTADNKILSRKKL-LDDGKEHFF 233

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           +  + +         +     +        + T  G   +K+  P               
Sbjct: 234 INISLDTARQRAFITDSKAAEVL------VVDTRNGNILAKVAAP--------------- 272

Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
                + A       +    +  +   +S+   K+ K++   DT    N++ A+S +G+ 
Sbjct: 273 ----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSL-ALSADGKT 327

Query: 264 LAAAAFTAD 272
           L  +     
Sbjct: 328 LYVSVKQKS 336

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 36/254 (14%), Positives = 76/254 (29%), Gaps = 36/254 (14%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
             T+   G     L +      +  +       +  +D  +    +         G P  
Sbjct: 204 KATVDLTGKWSKILLYDPIRDLVYCSNWISE-DISVIDRKTKLEIR----KTDKIGLPRG 258

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           +  + +   + +A  + S       G     S ++ K    +  P               
Sbjct: 259 LLLSKDGKELYIAQFSASNQESGG-GRLGIYSMDKEKLIDTIGPPG-------------- 303

Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
                          + I  S    + I ++  K  K+  ++      N + A+SP+G++
Sbjct: 304 ----NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTI-ALSPDGKY 358

Query: 264 LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK--------SAVTWLCFAPNSEQI- 314
           L  +    +       Y K GLV     V+              +  T L  +P++  + 
Sbjct: 359 LYVSCRGPNHP--TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLV 416

Query: 315 ITASKDGTLRVWNI 328
           I+   D  +RV+  
Sbjct: 417 ISDFLDHQIRVYRR 430

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 39/365 (10%), Positives = 95/365 (26%), Gaps = 50/365 (13%)

Query: 30  RRSEIKSIAKTELEPDHQKKPTKPSQPISKKSHSKPHSHSHGDKDQNKRHHPLDVNTLKG 89
           R      I K  + P          + +  K      + +  +          ++     
Sbjct: 23  REKNGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMDKNIALVEMAIPVYKDEKEI----- 77

Query: 90  HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN 149
               ++   F +          +   ++  LD     + +F+      G  P +V F DN
Sbjct: 78  -ELKLSSPGFQNSSY-RIRKPEELNEKLIALD-KEGITHRFIS-RFKTGFQPKSVRFIDN 133

Query: 150 ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGA 209
               +     L    +        +  N G+     P  + K +              G 
Sbjct: 134 TRLAIP---LLEDEGMD------VLDINSGQTVRLSPPEKYKKKL-------------GF 171

Query: 210 SATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFL-AAAA 268
             T    + + +  S  +   + ++  KT      VD     + +    P    +  +  
Sbjct: 172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW 231

Query: 269 FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
            + D+ V       D   K         G    +     + + +++  A    + +    
Sbjct: 232 ISEDISVI------DRKTKLEIRKTDKIGLPRGLL---LSKDGKELYIAQFSASNQESGG 282

Query: 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETG 386
                        K++       N        +   +    +  +    S ++   ++  
Sbjct: 283 GRLGIY--SMDKEKLIDTIGPPGNKR-----HIVSGNTENKIYVSDMCCSKIEVYDLKEK 335

Query: 387 KVLDT 391
           KV  +
Sbjct: 336 KVQKS 340

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 31/315 (9%), Positives = 79/315 (25%), Gaps = 55/315 (17%)

Query: 91  GDSVTGLCFSSDGKCLATACADG----VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF 146
           G        +SD   +            I      +   +  K + I          V  
Sbjct: 39  GYDFVDTAITSDCSNVVVTSDFCQTLVQI------ETQLEPPKVVAI-QEGQSSMADVDI 91

Query: 147 ADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTL 206
             +    V  T      ++       + S  + K  S +P P                  
Sbjct: 92  TPDDQFAVTVTGLNHPFNMQ------SYSFLKNKFISTIPIPY----------------- 128

Query: 207 FGASATYGTADGSTIIASCSEGTD-ISIWHGKTGKLLGNVDTNQLKN----NMAAISPNG 261
             A     + +G+ +I       + +  +      +L +     +           +P+G
Sbjct: 129 -DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG 187

Query: 262 RFLAAAAFTAD-VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI-ITASK 319
            F   A    + + +       +       +++   G  +    +  + +   + +    
Sbjct: 188 NFAFVANLIGNSIGIL------ETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTES 241

Query: 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG--ST 377
              +  +N               +L  P           ++++L+     L  +      
Sbjct: 242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA-----NQMALNKTETKLFISANISRE 296

Query: 378 LQWLSVETGKVLDTA 392
           L+  ++    V   A
Sbjct: 297 LKVFTISGKVVGYVA 311

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Length = 349

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 13/136 (9%)

Query: 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM------AAISPNGRFLAAAA 268
             D  T     +   DI      T K   + + + +   +       AISP+G+ + A  
Sbjct: 51  APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 110

Query: 269 FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
                +     Y        V S       K   T+    P    ++ A+ DG+L V   
Sbjct: 111 N--PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVAGP 166

Query: 329 NVRYHLDEDPKTLKVL 344
           ++      D KT K  
Sbjct: 167 DIYKM---DVKTGKYT 179

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 44.9 bits (105), Expect = 3e-05
 Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 31/178 (17%)

Query: 215 TADGSTIIA---SCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNG---------- 261
           + D  T+ A   S   G+ I+ +  +T              +       G          
Sbjct: 101 SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT 160

Query: 262 --RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319
               +A       + V ++             V        AVT +C++P  +Q+    +
Sbjct: 161 VPSMVAVCLADGSIAVLQV--------TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ 212

Query: 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGST 377
           +GT+  +            +  KV+P P    +   ++   +              + 
Sbjct: 213 NGTVVQY--------LPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 25/190 (13%), Positives = 58/190 (30%), Gaps = 20/190 (10%)

Query: 253 NMAAISPNGRFLAAAAFTADV-----KVWEIVYSKDGLVKAVTSVMQLK-GHKSAVTWLC 306
           ++ A+S     + A   +         +       D   K V  V  L    K  +  L 
Sbjct: 40  SLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLA 99

Query: 307 FAPNSEQI----ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362
            + ++  +    +++     +  +++    +  +  K        LL   G  +   + +
Sbjct: 100 LSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQK-RPFAYHKLLKDAGGMVIDMKWN 158

Query: 363 LSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT 422
            +    +       ++  L V     +          +T + W+PK    G Q    LA 
Sbjct: 159 PTVPSMVAVCLADGSIAVLQVTETVKVCATLP-STVAVTSVCWSPK----GKQ----LAV 209

Query: 423 SSVDKKVKLW 432
              +  V  +
Sbjct: 210 GKQNGTVVQY 219

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 47/307 (15%), Positives = 97/307 (31%), Gaps = 62/307 (20%)

Query: 91  GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNA 150
           G +  G   S DG  +  A A     V  +D A++         +P G  P  VA + + 
Sbjct: 31  GSNPMGAVISPDGTKVYVANAHSN-DVSIIDTATNNVIA----TVPAGSSPQGVAVSPDG 85

Query: 151 TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGAS 210
             + V     S  S+        I T        +   +                     
Sbjct: 86  KQVYVTNMASSTLSV--------IDTTSNTVAGTVKTGK------------------SPL 119

Query: 211 ATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT 270
               + DG  +  + +    +S+ +  T  ++  V   +    + A++P+G  +  A F 
Sbjct: 120 GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGI-AVTPDGTKVYVANFD 178

Query: 271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA---SKDGTLRVWN 327
           +   +  I    D +  +V   ++++   S +      P   +           T+ +  
Sbjct: 179 SM-SISVI----DTVTNSVIDTVKVEAAPSGIA---VNPEGTKAYVTNVDKYFNTVSMI- 229

Query: 328 INVRYHLDEDPKTLKVLP-IPLLDSNGATLQYDRLSLSSDGKILAATHG--STLQWLSVE 384
                    D  T K+   IP+            ++++ DGK +       +T+  +   
Sbjct: 230 ---------DTGTNKITARIPV--GPDP----AGIAVTPDGKKVYVALSFXNTVSVIDTA 274

Query: 385 TGKVLDT 391
           T  +  T
Sbjct: 275 TNTITAT 281

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Length = 337

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 26/219 (11%), Positives = 58/219 (26%), Gaps = 18/219 (8%)

Query: 63  SKPHSHSHGDKDQNKRHHPLDVNTLK-----GHGDSVTGLCFSSDGKCLATACADGVIRV 117
           S         + Q  R    D  TL           +T L ++ DG  L     D    +
Sbjct: 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD----L 156

Query: 118 HKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTN 177
           H +D  +      L  + P            +  + V   H  SG     +   +     
Sbjct: 157 HVMDPEAGT----LVEDKPIQSWEAETYAQPDVLA-VWNQHESSGVMATPFYTARKDIDP 211

Query: 178 EGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK 237
                 +     +  E  ++  +   +      +T      +    +      +  +  +
Sbjct: 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLE 268

Query: 238 TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
               +  V       ++  +S +G  +       D+  +
Sbjct: 269 KNASIKRVPLPHSYYSVN-VSTDGSTVWLGGALGDLAAY 306

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3pxw_D* 3sle_D* 1mg2_A* 1mg3_A* 2mta_H* ... Length = 386

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 27/203 (13%), Positives = 58/203 (28%), Gaps = 30/203 (14%)

Query: 231 ISIWHGKTGKLLGNVDTNQLKN-------NMAAISPNGRFLAAAAFTADVKVWEIVYSKD 283
           + ++   T     +++              M +++P+G+ L    F+    V  +     
Sbjct: 111 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 170

Query: 284 GLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKV 343
              + +              +  F    +      +DG+L                T ++
Sbjct: 171 AFKRML---------DVPDCYHIFPTAPDTFFMHCRDGSLAKVAF-------GTEGTPEI 214

Query: 344 LPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETG--KVLDTAEKAHEGEIT 401
               +       L          G+++  T+   +  + + +G  K L   E   E E  
Sbjct: 215 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER- 273

Query: 402 CMAWAPKTIPMGNQQVSVLATSS 424
               A    P G QQV+      
Sbjct: 274 ----ADGWRPGGWQQVAYHRALD 292

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	440
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.98
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.98
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.76
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.74
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.62
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.61
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.57
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.54
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.52
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.52
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.5
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.49
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.49
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.48
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.47
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.47
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.46
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.46
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.45
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.43
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.4
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.39
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.39
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.39
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.37
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.3
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.24
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.18
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.17
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.17
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.16
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.16
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.15
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.11
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.09
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.09
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.09
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.08
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.06
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.04
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.96
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.92
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.89
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.88
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.88
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.85
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.84
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.82
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.82
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.81
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.8
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.8
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.78
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.7
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.68
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.68
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.67
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.59
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.57
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.57
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.56
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.52
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.52
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.51
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.51
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.44
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.44
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.43
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.42
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.4
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.37
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.36
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.33
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.28
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.25
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.18
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.14
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.12
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.11
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.1
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.01
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.99
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.99
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.97
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.97
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.95
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.89
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.88
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.87
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.84
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.83
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.81
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.77
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.76
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.73
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.66
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.65
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.58
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.58
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.52
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.49
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.48
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.47
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.37
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.35
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.3
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.28
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.26
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.26
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.98
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.98
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.85
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.77
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.63
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.43
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.27
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.27
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.16
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.16
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.12
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.96
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.93
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.89
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.81
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.62
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.56
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.52
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.5
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.39
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.19
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.11
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.7
3ott_A	758	Two-component system sensor histidine kinase; beta	94.67
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.58
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.43
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.37
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.18
3ott_A	758	Two-component system sensor histidine kinase; beta	93.9
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.83
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.27
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.42
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.29
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.11
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.82
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.76
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.07
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.4
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	88.99
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	86.84
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	86.64
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	86.47
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	86.31
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.7
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	85.1
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	84.0
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	83.98
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	83.91
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.9
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	83.88
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	83.5
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	83.22
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.96
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	80.91
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	80.58

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.4e-46  Score=329.67  Aligned_cols=293  Identities=18%  Similarity=0.258  Sum_probs=238.3

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ...+|.+|.+.|++++|+||+++|++|+.||+|++||+.++.     .......|...|.+++|+|+++++++++.+   
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---  118 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLD---  118 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----EEEEEECSSSCEEEEEECTTSSEEEEEETT---
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----cceEeecCCccEEEEEECCCCCEEEEEeCC---
Confidence            467899999999999999999999999999999999998764     233445677889999999999999999887   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ..+.+|+.......            .........|...+.       ++.+++++  .+++++.|++|++||+.+++.+
T Consensus       119 ~~v~iw~~~~~~~~------------~~~~~~~~~h~~~v~-------~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~  177 (340)
T 1got_B          119 NICSIYNLKTREGN------------VRVSRELAGHTGYLS-------CCRFLDDN--QIVTSSGDTTCALWDIETGQQT  177 (340)
T ss_dssp             CEEEEEETTTCSBS------------CEEEEEEECCSSCEE-------EEEEEETT--EEEEEETTSCEEEEETTTTEEE
T ss_pred             CeEEEEECccCCCc------------ceeEEEecCCCccEE-------EEEECCCC--cEEEEECCCcEEEEECCCCcEE
Confidence            46677765432100            000001111111111       12223444  5889999999999999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~  322 (440)
                      ..+..|...|.+++|+|++++|++|+.|+.|++||++.+.        ....+.+|...|.+++|+|++.+|++++.|++
T Consensus       178 ~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~--------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~  249 (340)
T 1got_B          178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM--------CRQTFTGHESDINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe--------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence            9999999999999999999999999999999999997654        67788899999999999999999999999999


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeE
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEIT  401 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~  401 (440)
                      |++||+++...+..            .....+...|.+++|+|+|++|++|+ |+.|++||..+++.+..+ .+|.+.|.
T Consensus       250 v~iwd~~~~~~~~~------------~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~-~~h~~~v~  316 (340)
T 1got_B          250 CRLFDLRADQELMT------------YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGHDNRVS  316 (340)
T ss_dssp             EEEEETTTTEEEEE------------ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEE
T ss_pred             EEEEECCCCcEEEE------------EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe-ecCCCcEE
Confidence            99999986543211            11223334588999999999999876 899999999999988888 59999999


Q ss_pred             EEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      +++|+|++        .+|+||+.||+|+||+
T Consensus       317 ~~~~s~dg--------~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          317 CLGVTDDG--------MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECTTS--------SCEEEEETTSCEEEEC
T ss_pred             EEEEcCCC--------CEEEEEcCCccEEecC
Confidence            99999998        8999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.5e-46  Score=325.49  Aligned_cols=295  Identities=16%  Similarity=0.234  Sum_probs=244.2

Q ss_pred             CccccccccccCcceeEEEEccC----CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEE
Q 013578           80 HPLDVNTLKGHGDSVTGLCFSSD----GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVV  155 (440)
Q Consensus        80 ~~~~~~~l~~H~~~V~~l~~s~d----g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  155 (440)
                      ....++.+++|.+.|++++|+|+    +.+|+||+.|++|+||++.....   .......+|...|.+++|++++..+++
T Consensus        21 ~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---~~~~~l~gh~~~v~~~~~~~~~~~l~s   97 (321)
T 3ow8_A           21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---DLQWSLEGHQLGVVSVDISHTLPIAAS   97 (321)
T ss_dssp             CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred             hhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---eeeeeeccCCCCEEEEEECCCCCEEEE
Confidence            34456778899999999999985    67999999999999999976532   233446788899999999999999999


Q ss_pred             EeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEe
Q 013578          156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWH  235 (440)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd  235 (440)
                      ++.|   ..+.+|+...........                .+       ......+.++|+++ ++++++.|+.|++|+
T Consensus        98 ~s~D---~~i~lWd~~~~~~~~~~~----------------~~-------~~~~~~~~~spdg~-~l~~g~~dg~v~i~~  150 (321)
T 3ow8_A           98 SSLD---AHIRLWDLENGKQIKSID----------------AG-------PVDAWTLAFSPDSQ-YLATGTHVGKVNIFG  150 (321)
T ss_dssp             EETT---SEEEEEETTTTEEEEEEE----------------CC-------TTCCCCEEECTTSS-EEEEECTTSEEEEEE
T ss_pred             EeCC---CcEEEEECCCCCEEEEEe----------------CC-------CccEEEEEECCCCC-EEEEEcCCCcEEEEE
Confidence            9887   577777765432111000                00       01122345688888 999999999999999


Q ss_pred             CCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578          236 GKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       236 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  315 (440)
                      +++++....+..+...+.+++|+|++++|++|+.||.|++||++.++        .+..+.+|..+|.+++|+|++++|+
T Consensus       151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l~~spd~~~l~  222 (321)
T 3ow8_A          151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK--------LLHTLEGHAMPIRSLTFSPDSQLLV  222 (321)
T ss_dssp             TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------EEEEECCCSSCCCEEEECTTSCEEE
T ss_pred             cCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------EEEEEcccCCceeEEEEcCCCCEEE
Confidence            99999999998888899999999999999999999999999987654        6778889999999999999999999


Q ss_pred             EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhc
Q 013578          316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEK  394 (440)
Q Consensus       316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~  394 (440)
                      +++.|++|++||+++....              ....+|...|.+++|+|++++|++++ |+.|++||+.+++++..+ .
T Consensus       223 s~s~dg~i~iwd~~~~~~~--------------~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~  287 (321)
T 3ow8_A          223 TASDDGYIKIYDVQHANLA--------------GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF-F  287 (321)
T ss_dssp             EECTTSCEEEEETTTCCEE--------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-C
T ss_pred             EEcCCCeEEEEECCCccee--------------EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-c
Confidence            9999999999999865432              12235667799999999999999865 899999999999999888 5


Q ss_pred             cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       395 ~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      +|.+.|++++|+|++        .+|++++.||+|++||++
T Consensus       288 ~h~~~v~~v~~s~~g--------~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          288 DHQDQVWGVKYNGNG--------SKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CCSSCEEEEEECTTS--------SEEEEEETTCCEEEEECC
T ss_pred             CCCCcEEEEEECCCC--------CEEEEEeCCCeEEEEeCC
Confidence            899999999999998        899999999999999975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.3e-46  Score=335.03  Aligned_cols=290  Identities=20%  Similarity=0.328  Sum_probs=242.5

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ....+.+|.++|++++|+|++++|++|+.||+|+|||+.++..     .....+|...|.+++|+|+++++++++.|   
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----~~~l~~h~~~V~~v~~~~~~~~l~sgs~D---  171 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----ERTLKGHTDSVQDISFDHSGKLLASCSAD---  171 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----CEEECCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----EEEEeccCCcEEEEEEcCCCCEEEEEeCC---
Confidence            4667899999999999999999999999999999999987753     34556788999999999999999999988   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ..+.+|+.......                .....|...       ...+.++|++. ++++++.|++|++||+.++.++
T Consensus       172 ~~i~iwd~~~~~~~----------------~~~~~h~~~-------V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~  227 (410)
T 1vyh_C          172 MTIKLWDFQGFECI----------------RTMHGHDHN-------VSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCV  227 (410)
T ss_dssp             SCCCEEETTSSCEE----------------ECCCCCSSC-------EEEEEECSSSS-EEEEEETTSEEEEEETTTCCEE
T ss_pred             CeEEEEeCCCCcee----------------EEEcCCCCC-------EEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEE
Confidence            45566655432110                001112221       12234477887 8999999999999999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC------------
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN------------  310 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~------------  310 (440)
                      ..+..|...+.++.+++++++|++|+.|+.|++||+....        ....+.+|...|.+++|+|+            
T Consensus       228 ~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  299 (410)
T 1vyh_C          228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--------CKAELREHRHVVECISWAPESSYSSISEATGS  299 (410)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred             EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------eeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence            9999999999999999999999999999999999986654        56778899999999999996            


Q ss_pred             --------CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEE
Q 013578          311 --------SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWL  381 (440)
Q Consensus       311 --------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~  381 (440)
                              +.+|++|+.|++|++||++++.++.              ...+|...|.+++|+|+|++|++|+ |+.|++|
T Consensus       300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~--------------~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vw  365 (410)
T 1vyh_C          300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM--------------TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW  365 (410)
T ss_dssp             C-------CCEEEEEETTSEEEEEETTTTEEEE--------------EEECCSSCEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCCceEE--------------EEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                    6689999999999999998765431              1235666799999999999998865 8999999


Q ss_pred             EcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      |..+++++..+ .+|...|++++|+|++        .+|++|+.||+|++|+++
T Consensus       366 d~~~~~~~~~~-~~h~~~v~~l~~~~~~--------~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          366 DYKNKRCMKTL-NAHEHFVTSLDFHKTA--------PYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CCTTSCCCEEE-ECCSSCEEEEEECSSS--------SCEEEEETTSEEEEEC--
T ss_pred             ECCCCceEEEE-cCCCCcEEEEEEcCCC--------CEEEEEeCCCcEEEEeCC
Confidence            99999998888 5899999999999998        899999999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.8e-45  Score=325.26  Aligned_cols=297  Identities=18%  Similarity=0.281  Sum_probs=237.9

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ...++|.||.+.|++++|+||+++|+||+.||+|+|||..+...     ......+...|.+++|+|++..+++++.+  
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----~~~~~~~~~~v~~~~~sp~g~~lasg~~d--  127 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----EHAVTMPCTWVMACAYAPSGCAIACGGLD--  127 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----EEEEECSSSCCCEEEECTTSSEEEEESTT--
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----ceEEecCCCCEEEEEECCCCCEEEEeeCC--
Confidence            34678999999999999999999999999999999999876642     23334566889999999999999999887  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                       ..+.+|+..........       ....   ....|..       ....+.+++++. .+++++.|++|++||+++++.
T Consensus       128 -~~i~v~~~~~~~~~~~~-------~~~~---~~~~h~~-------~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~  188 (354)
T 2pbi_B          128 -NKCSVYPLTFDKNENMA-------AKKK---SVAMHTN-------YLSACSFTNSDM-QILTASGDGTCALWDVESGQL  188 (354)
T ss_dssp             -SEEEEEECCCCTTCCSG-------GGCE---EEEECSS-------CEEEEEECSSSS-EEEEEETTSEEEEEETTTCCE
T ss_pred             -CCEEEEEEecccccccc-------ccce---eeeccCC-------cEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeE
Confidence             45555544321100000       0000   0011111       122344577777 899999999999999999999


Q ss_pred             eeeeeCCCCcccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578          242 LGNVDTNQLKNNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      +..+..|...+.+++++|  ++++|++|+.||.|++||++.++        .+..+.+|...|.+++|+|++.+|++++.
T Consensus       189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~  260 (354)
T 2pbi_B          189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ--------CVQAFETHESDVNSVRYYPSGDAFASGSD  260 (354)
T ss_dssp             EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc--------EEEEecCCCCCeEEEEEeCCCCEEEEEeC
Confidence            999999999999999987  57899999999999999997665        67778899999999999999999999999


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccC
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEG  398 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~  398 (440)
                      |++|++||++....+.            ..........+.+++|+|+|++|++|+ |+.|++||+.+++.+..+ .+|.+
T Consensus       261 D~~v~lwd~~~~~~~~------------~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l-~~h~~  327 (354)
T 2pbi_B          261 DATCRLYDLRADREVA------------IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGHEN  327 (354)
T ss_dssp             TSCEEEEETTTTEEEE------------EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-CCCSS
T ss_pred             CCeEEEEECCCCcEEE------------EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE-ECCCC
Confidence            9999999998654321            111122234578899999999999876 899999999999988887 58999


Q ss_pred             CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      .|++++|+|++        .+|++|+.||+|+||+
T Consensus       328 ~v~~l~~spdg--------~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          328 RVSTLRVSPDG--------TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CEEEEEECTTS--------SCEEEEETTSEEEEEC
T ss_pred             cEEEEEECCCC--------CEEEEEcCCCCEEecC
Confidence            99999999998        8999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.4e-46  Score=332.17  Aligned_cols=311  Identities=19%  Similarity=0.263  Sum_probs=240.9

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      .+.++|.||.+.|++++|+|++++|+||+.||+|+|||+.++.     .......|...|.+++|+|+++++++++.+  
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-----~~~~~~~h~~~v~~~~~s~~g~~las~~~d--  129 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-----KTHAIKLHCPWVMECAFAPNGQSVACGGLD--  129 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECCCTTCCCCEECTTSSEEEECCSS--
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----cceEEecCCCCEEEEEECCCCCEEEEeeCC--
Confidence            3567899999999999999999999999999999999998764     334455678899999999999999999887  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                       ..+.+|+..........     .+    .......|..       ....+.+.|++...+++|+.|++|++||+.+++.
T Consensus       130 -~~v~iw~~~~~~~~~~~-----~~----~~~~~~gh~~-------~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~  192 (380)
T 3iz6_a          130 -SACSIFNLSSQADRDGN-----MP----VSRVLTGHKG-------YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR  192 (380)
T ss_dssp             -SCCEEEECCCCSSCCCS-----ST----TCCBCCCCSS-------CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE
T ss_pred             -CcEEEEECCCCccccCC-----cc----ceeeccCCCc-------ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE
Confidence             45555554332110000     00    0000111111       1223344666555899999999999999999998


Q ss_pred             eeee-----eCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578          242 LGNV-----DTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       242 ~~~~-----~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  315 (440)
                      +..+     ..|...+.++++++ ++++|++|+.|+.|++||++...       ..+..+.+|.+.|.+++|+|++.+|+
T Consensus       193 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-------~~~~~~~~h~~~v~~v~~~p~~~~l~  265 (380)
T 3iz6_a          193 ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-------RAVRTYHGHEGDINSVKFFPDGQRFG  265 (380)
T ss_dssp             EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-------CCCEEECCCSSCCCEEEECTTSSEEE
T ss_pred             EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-------cceEEECCcCCCeEEEEEecCCCeEE
Confidence            8776     56788899999977 88999999999999999986432       25677889999999999999999999


Q ss_pred             EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhh--
Q 013578          316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTA--  392 (440)
Q Consensus       316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~--  392 (440)
                      +++.|++|++||++++..+....       ........+...+.+++|+|+|++|++|+ |+.|++||..+++.+..+  
T Consensus       266 s~s~D~~i~lwd~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~  338 (380)
T 3iz6_a          266 TGSDDGTCRLFDMRTGHQLQVYN-------REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT  338 (380)
T ss_dssp             EECSSSCEEEEETTTTEEEEEEC-------CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             EEcCCCeEEEEECCCCcEEEEec-------ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec
Confidence            99999999999999775542111       11111122233478999999999999876 899999999988876544  


Q ss_pred             -hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          393 -EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       393 -~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                       ..+|.+.|++++|+|++        .+|+||+.||+|++|++...+
T Consensus       339 ~~~~h~~~v~~l~~s~dg--------~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          339 LQNSHEGRISCLGLSSDG--------SALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SCSSCCCCCCEEEECSSS--------SEEEEECTTSCEEEEECCSSS
T ss_pred             ccCCCCCceEEEEECCCC--------CEEEEeeCCCCEEEEecCCCc
Confidence             25799999999999998        899999999999999998754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.2e-44  Score=311.92  Aligned_cols=253  Identities=16%  Similarity=0.260  Sum_probs=216.6

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ..++|.+|.+.|++++|+|+|++|++|+.||+|++||+.++.     .......|..+|.+++|+|+++           
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~-----------   68 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----EVRSIQVTETPVRAGKFIARKN-----------   68 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGT-----------
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----eeEEeeccCCcEEEEEEeCCCC-----------
Confidence            356799999999999999999999999999999999998754     3344456778889999988755           


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                                                                                ++++|+.|++|++||+.+++.+
T Consensus        69 ----------------------------------------------------------~l~s~s~d~~i~vwd~~~~~~~   90 (304)
T 2ynn_A           69 ----------------------------------------------------------WIIVGSDDFRIRVFNYNTGEKV   90 (304)
T ss_dssp             ----------------------------------------------------------EEEEEETTSEEEEEETTTCCEE
T ss_pred             ----------------------------------------------------------EEEEECCCCEEEEEECCCCcEE
Confidence                                                                      7888899999999999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCC
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDG  321 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg  321 (440)
                      ..+..|...|.+++|+|++++|++|+.|++|++||++.+.       .....+.+|...|.+++|+| ++.+|++|+.|+
T Consensus        91 ~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~  163 (304)
T 2ynn_A           91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (304)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-------EEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred             EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-------chhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence            9999999999999999999999999999999999986543       24566889999999999999 678999999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC--CCCEEEEec-CCEEEEEEcCCccchhhhhccccC
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS--DGKILAATH-GSTLQWLSVETGKVLDTAEKAHEG  398 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~  398 (440)
                      +|++||++......             ....++...+..+.|+|  ++.+|++++ |+.|++||+.+++++..+ .+|..
T Consensus       164 ~v~iwd~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-~~h~~  229 (304)
T 2ynn_A          164 TVKVWSLGQSTPNF-------------TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMS  229 (304)
T ss_dssp             EEEEEETTCSSCSE-------------EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-ECCSS
T ss_pred             eEEEEECCCCCccc-------------eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-CCCCC
Confidence            99999997543210             00112334567788876  778888865 899999999999999888 59999


Q ss_pred             CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .|.+++|+|++        .+|++|+.||+|++||+.+++
T Consensus       230 ~v~~~~~~p~~--------~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          230 NVSFAVFHPTL--------PIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             CEEEEEECSSS--------SEEEEEETTSCEEEEETTTCC
T ss_pred             CEEEEEECCCC--------CEEEEEcCCCeEEEEECCCCc
Confidence            99999999998        899999999999999998865

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-43  Score=312.99  Aligned_cols=316  Identities=17%  Similarity=0.242  Sum_probs=234.0

Q ss_pred             ccccccccCc-ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           83 DVNTLKGHGD-SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        83 ~~~~l~~H~~-~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      .+.++.+|.+ .|++++|+|+|++||+|+.|++|+||++..+...  .......+|...|.+++|+|++++|++++.|  
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D--   82 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--CKSVLSEGHQRTVRKVAWSPCGNYLASASFD--   82 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--EEEEECSSCSSCEEEEEECTTSSEEEEEETT--
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--eeeeeccccCCcEEEEEECCCCCEEEEEECC--
Confidence            5678899988 9999999999999999999999999999865321  1122345788999999999999999999987  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc-
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-  240 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-  240 (440)
                       ..+.+|+......              ........|...       ...+.++|+++ +|++++.|++|++||+.++. 
T Consensus        83 -~~v~iw~~~~~~~--------------~~~~~~~~h~~~-------v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~  139 (345)
T 3fm0_A           83 -ATTCIWKKNQDDF--------------ECVTTLEGHENE-------VKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDE  139 (345)
T ss_dssp             -SCEEEEEECCC-E--------------EEEEEECCCSSC-------EEEEEECTTSS-EEEEEETTSCEEEEEECTTSC
T ss_pred             -CcEEEEEccCCCe--------------EEEEEccCCCCC-------ceEEEEeCCCC-EEEEEECCCeEEEEECCCCCC
Confidence             4555665432200              000011112211       22344578888 99999999999999998764 


Q ss_pred             --eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578          241 --LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       241 --~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                        ++..+..|...|.+++|+|++++|++|+.|+.|++||+....      ......+.+|...|.+++|+|++++|++++
T Consensus       140 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~------~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s  213 (345)
T 3fm0_A          140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD------WVCCATLEGHESTVWSLAFDPSGQRLASCS  213 (345)
T ss_dssp             EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC------EEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence              456677889999999999999999999999999999986532      124567889999999999999999999999


Q ss_pred             CCCcEEEEecCccccccCCCCcc--ccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccch------
Q 013578          319 KDGTLRVWNINVRYHLDEDPKTL--KVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVL------  389 (440)
Q Consensus       319 ~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~------  389 (440)
                      .|++|++||..............  ............|...|.+++|+|++..|++++ |+.|++|+...+...      
T Consensus       214 ~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  293 (345)
T 3fm0_A          214 DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS  293 (345)
T ss_dssp             TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE
T ss_pred             CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE
Confidence            99999999975432211100000  000000011122566799999999999888865 899999998765321      


Q ss_pred             --hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          390 --DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       390 --~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                        .....+|.+.|++++|+|+++       .+|++|+.||+|++|++.+.+
T Consensus       294 ~~~~~~~~h~~~V~~v~~~p~~~-------~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          294 LTAHLHQAHSQDVNCVAWNPKEP-------GLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             EEEEETTSSSSCEEEEEECSSST-------TEEEEEETTSCEEEEEECC--
T ss_pred             EEeeecccccCcEeEeEEeCCCc-------eEEEEcCCCCcEEEEEecCCC
Confidence              112247999999999999861       489999999999999998765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.8e-43  Score=309.16  Aligned_cols=296  Identities=21%  Similarity=0.267  Sum_probs=237.1

Q ss_pred             ccccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           83 DVNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ...+|.||.+.|++++|+|++ ++|+||+.|++|++|++...............+|...|.+++|+|+++++++++.|  
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D--   86 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD--   86 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT--
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC--
Confidence            356799999999999999965 89999999999999999754433333455667899999999999999999999987  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                       ..+.+|+.......                .....|...+       ..+.+++++. ++++++.|++|++||++ ++.
T Consensus        87 -~~v~~wd~~~~~~~----------------~~~~~h~~~v-------~~~~~~~~~~-~l~s~s~D~~i~vwd~~-~~~  140 (319)
T 3frx_A           87 -KTLRLWDVATGETY----------------QRFVGHKSDV-------MSVDIDKKAS-MIISGSRDKTIKVWTIK-GQC  140 (319)
T ss_dssp             -SEEEEEETTTTEEE----------------EEEECCSSCE-------EEEEECTTSC-EEEEEETTSCEEEEETT-SCE
T ss_pred             -CEEEEEECCCCCee----------------EEEccCCCcE-------EEEEEcCCCC-EEEEEeCCCeEEEEECC-CCe
Confidence             57788876543211                0111122111       2233467777 99999999999999996 667


Q ss_pred             eeeeeCCCCcccEEEecCC------CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578          242 LGNVDTNQLKNNMAAISPN------GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  315 (440)
                      +..+..|...+.++.++|.      +..|++++.|+.|++||++...        ....+.+|...|.+++|+|++++|+
T Consensus       141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--------~~~~~~~h~~~v~~~~~sp~g~~l~  212 (319)
T 3frx_A          141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--------IEADFIGHNSNINTLTASPDGTLIA  212 (319)
T ss_dssp             EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--------EEEEECCCCSCEEEEEECTTSSEEE
T ss_pred             EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--------hheeecCCCCcEEEEEEcCCCCEEE
Confidence            7888889999999999985      4589999999999999986543        5667889999999999999999999


Q ss_pred             EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhh--
Q 013578          316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE--  393 (440)
Q Consensus       316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~--  393 (440)
                      +++.||+|++||++++..+..       +.        ....|.+++|+|++.+|+++.++.+++|++..+..+..+.  
T Consensus       213 s~~~dg~i~iwd~~~~~~~~~-------~~--------~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~  277 (319)
T 3frx_A          213 SAGKDGEIMLWNLAAKKAMYT-------LS--------AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE  277 (319)
T ss_dssp             EEETTCEEEEEETTTTEEEEE-------EE--------CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCC
T ss_pred             EEeCCCeEEEEECCCCcEEEE-------ec--------CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCcc
Confidence            999999999999987654321       10        1235889999999999999999999999998876544331  


Q ss_pred             -----ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          394 -----KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       394 -----~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                           ..|...+.+++|+|++        ++|++|+.||.|+||++.+.
T Consensus       278 ~~~~~~~~~~~v~~~~~spdg--------~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          278 FAGYSKAAEPHAVSLAWSADG--------QTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CTTCCGGGCCCEEEEEECTTS--------SEEEEEETTSCEEEEEEEEC
T ss_pred             ccccccCcCcceeEEEECCCC--------CEEEEeecCceEEEEEEeec
Confidence                 3467789999999999        89999999999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8e-44  Score=316.05  Aligned_cols=309  Identities=17%  Similarity=0.213  Sum_probs=221.1

Q ss_pred             CCCcccCccccccccccCcceeEEEEccCCCEEEEeeC------CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEc
Q 013578           74 DQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACA------DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFA  147 (440)
Q Consensus        74 ~~~~~~~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~------dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  147 (440)
                      +...+.|..+.....+|...|++++|||||++||+|+.      |+.|++|+..++...... ......|...|.+++|+
T Consensus        25 ~~~~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-~~~~~~~~~~V~~~~~s  103 (357)
T 4g56_B           25 SSKGSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-CTAGVQTEAGVTDVAWV  103 (357)
T ss_dssp             ---------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG-CSEEEECSSCEEEEEEE
T ss_pred             CccccccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE-ecccCCCCCCEEEEEEc
Confidence            34445666677777889999999999999999999997      778999998766433221 22233566889999999


Q ss_pred             cCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC
Q 013578          148 DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE  227 (440)
Q Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  227 (440)
                      |++..+ +++.+   ..+.+|+...........         ..   ...|...       ..++.++|+++ +|++++.
T Consensus       104 ~d~~~l-~~s~d---g~v~lWd~~~~~~~~~~~---------~~---~~~h~~~-------V~~v~~spdg~-~l~sgs~  159 (357)
T 4g56_B          104 SEKGIL-VASDS---GAVELWEILEKESLLVNK---------FA---KYEHDDI-------VKTLSVFSDGT-QAVSGGK  159 (357)
T ss_dssp             TTTEEE-EEETT---SCEEEC--------CCCC---------EE---ECCCSSC-------EEEEEECSSSS-EEEEEET
T ss_pred             CCCCEE-EEECC---CEEEEeeccccceeEEEe---------ec---cCCCCCC-------EEEEEECCCCC-EEEEEeC
Confidence            998654 55555   467888765432110000         00   0011111       22344588888 8999999


Q ss_pred             CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEE
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC  306 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  306 (440)
                      |+.|++||+++++.+..+..|...|.+++|++++. ++++++.||.|++||++.++.      .....+..|...+.+++
T Consensus       160 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~------~~~~~~~~~~~~v~~v~  233 (357)
T 4g56_B          160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP------ATRIDFCASDTIPTSVT  233 (357)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC------BCBCCCTTCCSCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce------eeeeeeccccccccchh
Confidence            99999999999999999999999999999999875 789999999999999876541      11223445778899999


Q ss_pred             EcCCC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEEEec-CCEEEEEEc
Q 013578          307 FAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILAATH-GSTLQWLSV  383 (440)
Q Consensus       307 ~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~-~~~i~i~d~  383 (440)
                      |+|++ .+|++|+.|+.|++||++++..+.              ...++...|.+++|+|++ ++|++|+ |+.|+|||+
T Consensus       234 ~sp~~~~~la~g~~d~~i~~wd~~~~~~~~--------------~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~  299 (357)
T 4g56_B          234 WHPEKDDTFACGDETGNVSLVNIKNPDSAQ--------------TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA  299 (357)
T ss_dssp             ECTTSTTEEEEEESSSCEEEEESSCGGGCE--------------EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             hhhcccceEEEeecccceeEEECCCCcEeE--------------EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence            99974 678999999999999998764321              123456679999999997 5788765 899999999


Q ss_pred             CCccchhhhhccccCCeEEEEecC-CCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          384 ETGKVLDTAEKAHEGEITCMAWAP-KTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       384 ~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      .+++++..+  +|.+.|++++|+| ++        .+|+|||.||+|++|++++.
T Consensus       300 ~~~~~~~~~--~H~~~V~~vafsP~d~--------~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          300 DFSEVFRDL--SHRDFVTGVAWSPLDH--------SKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             TSCEEEEEC--CCSSCEEEEEECSSST--------TEEEEEETTSCEEEEECC--
T ss_pred             CCCcEeEEC--CCCCCEEEEEEeCCCC--------CEEEEEcCCCeEEEEECCCC
Confidence            999988765  6999999999998 56        79999999999999999763

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.1e-43  Score=310.73  Aligned_cols=297  Identities=20%  Similarity=0.252  Sum_probs=233.1

Q ss_pred             cccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           84 VNTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ..+|+||++.|++|+|+|+ +++|||||.||+|+|||+...+...........+|...|.+++|+|+++++++++.+   
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d---  107 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD---  107 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc---
Confidence            4579999999999999997 689999999999999999887655555566677899999999999999999999887   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce-
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL-  241 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-  241 (440)
                      ..+.+|+..........                ..+...       .....+.+++. ++++++.|+.+++||...... 
T Consensus       108 ~~i~~~~~~~~~~~~~~----------------~~~~~~-------~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~  163 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRF----------------VGHTKD-------VLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKY  163 (340)
T ss_dssp             SEEEEEETTTTEEEEEE----------------ECCSSC-------EEEEEECTTSS-CEEEEETTSCEEEECTTSCEEE
T ss_pred             ccceEEeecccceeeee----------------cCCCCc-------eeEEEEeecCc-cceeecCCCeEEEEEeCCCceE
Confidence            35555554433211100                000011       11122355666 899999999999999876544 


Q ss_pred             eeeeeCCCCcccEEEecCCC--CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578          242 LGNVDTNQLKNNMAAISPNG--RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      ......|...+.+++|++++  .++++++.|+.|++||++...        ....+.+|.+.|++++|+|++++|++++.
T Consensus       164 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  235 (340)
T 4aow_A          164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK--------LKTNHIGHTGYLNTVTVSPDGSLCASGGK  235 (340)
T ss_dssp             EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE--------EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc--------eeeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence            34456778889999998864  578899999999999986654        67778899999999999999999999999


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhh-------
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTA-------  392 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~-------  392 (440)
                      |+.|++||+++...+..       +        .+...+..+.|+|++.+++++.|+.|++||++++..+..+       
T Consensus       236 Dg~i~iwd~~~~~~~~~-------~--------~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  300 (340)
T 4aow_A          236 DGQAMLWDLNEGKHLYT-------L--------DGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIST  300 (340)
T ss_dssp             TCEEEEEETTTTEEEEE-------E--------ECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC----
T ss_pred             CCeEEEEEeccCceeee-------e--------cCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceee
Confidence            99999999987654321       1        1123478999999999999999999999999887654433       


Q ss_pred             -hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          393 -EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       393 -~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                       ..+|...|++++|+|++        ++|++|+.||.|+||++.+|+
T Consensus       301 ~~~~h~~~v~~l~~s~dg--------~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          301 SSKAEPPQCTSLAWSADG--------QTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ---CCCCCEEEEEECTTS--------SEEEEEETTSCEEEEEEEC--
T ss_pred             eccCCCCCEEEEEECCCC--------CEEEEEeCCCEEEEEeCCCcC
Confidence             24688999999999998        899999999999999999875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-42  Score=331.26  Aligned_cols=318  Identities=17%  Similarity=0.183  Sum_probs=249.1

Q ss_pred             CCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCC
Q 013578           75 QNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNA  150 (440)
Q Consensus        75 ~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~  150 (440)
                      ...++|..    ....|.+|.+.|++++|+|||++||+|+.||+|+|||+.++...   .......|.+.|.+++|+|++
T Consensus        39 ~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~---~~~~~~~~~~~v~~v~fs~dg  115 (611)
T 1nr0_A           39 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---LKTTIPVFSGPVKDISWDSES  115 (611)
T ss_dssp             TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---EEEEEECSSSCEEEEEECTTS
T ss_pred             CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce---eeEeecccCCceEEEEECCCC
Confidence            35555543    46788999999999999999999999999999999999755432   223445678899999999999


Q ss_pred             CeEEEEeecCC-cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCc
Q 013578          151 TSIVVATHNLS-GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGT  229 (440)
Q Consensus       151 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  229 (440)
                      +.+++++.+.. ...+++|+.......                  ...|...+       ..+.++|++...|++++.|+
T Consensus       116 ~~l~~~~~~~~~~~~v~~wd~~~~~~~------------------l~gh~~~v-------~~v~f~p~~~~~l~s~s~D~  170 (611)
T 1nr0_A          116 KRIAAVGEGRERFGHVFLFDTGTSNGN------------------LTGQARAM-------NSVDFKPSRPFRIISGSDDN  170 (611)
T ss_dssp             CEEEEEECCSSCSEEEEETTTCCBCBC------------------CCCCSSCE-------EEEEECSSSSCEEEEEETTS
T ss_pred             CEEEEEECCCCceeEEEEeeCCCCcce------------------ecCCCCCc-------eEEEECCCCCeEEEEEeCCC
Confidence            99998876532 246788875432111                  11222222       22344788876799999999


Q ss_pred             eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-------ccccce
Q 013578          230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-------GHKSAV  302 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~h~~~v  302 (440)
                      +|++||..+++++..+..|...|.+++|+|+|++|++|+.|+.|++||+..+.        ....+.       +|.+.|
T Consensus       171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~--------~~~~~~~~~~~~~~h~~~V  242 (611)
T 1nr0_A          171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--------KTGVFEDDSLKNVAHSGSV  242 (611)
T ss_dssp             CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------EEEECBCTTSSSCSSSSCE
T ss_pred             eEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc--------EeeeeccccccccccCCCE
Confidence            99999999999999999999999999999999999999999999999986544        333442       799999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcc-------------------------cccc----ccccCCCC
Q 013578          303 TWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTL-------------------------KVLP----IPLLDSNG  353 (440)
Q Consensus       303 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~~~----~~~~~~~~  353 (440)
                      .+++|+|++++|++++.|++|++||++++.++.......                         ..+.    .......+
T Consensus       243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g  322 (611)
T 1nr0_A          243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG  322 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence            999999999999999999999999998766543211000                         0000    01112346


Q ss_pred             CeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578          354 ATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW  432 (440)
Q Consensus       354 ~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw  432 (440)
                      |...|.+++|+|+|++|++++ |+.|++||+.+++....+..+|...|.+++|++++         .|++++.|+.+++|
T Consensus       323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~---------~l~s~s~d~~v~~w  393 (611)
T 1nr0_A          323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG---------DLFTVSWDDHLKVV  393 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS---------CEEEEETTTEEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC---------cEEEEEcCCceEEe
Confidence            778899999999999999876 89999999999988776656799999999999874         78999999999999


Q ss_pred             eCCCC
Q 013578          433 LAPSL  437 (440)
Q Consensus       433 ~~~~~  437 (440)
                      ++...
T Consensus       394 ~~~~~  398 (611)
T 1nr0_A          394 PAGGS  398 (611)
T ss_dssp             CSSSS
T ss_pred             ecCCc
Confidence            98764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.2e-42  Score=305.76  Aligned_cols=299  Identities=17%  Similarity=0.203  Sum_probs=231.7

Q ss_pred             ccccccccccCcceeEEEE-----cc-CCCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCceEEEccCCCe
Q 013578           81 PLDVNTLKGHGDSVTGLCF-----SS-DGKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPTAVAFADNATS  152 (440)
Q Consensus        81 ~~~~~~l~~H~~~V~~l~~-----s~-dg~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~  152 (440)
                      ......|+||.+.|++++|     ++ |+++|+||+.|++|++||+......  .........+|...|.+++|+|++.+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            3456789999999999999     77 9999999999999999999764322  12234556788899999999999999


Q ss_pred             EEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEE
Q 013578          153 IVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDIS  232 (440)
Q Consensus       153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  232 (440)
                      +++++.|   ..+.+|+.......                .....|...       ...+.++|+++ ++++++.|++|+
T Consensus        91 l~s~s~D---~~v~lwd~~~~~~~----------------~~~~~h~~~-------v~~v~~sp~~~-~l~s~~~d~~i~  143 (343)
T 2xzm_R           91 AISSSWD---KTLRLWDLRTGTTY----------------KRFVGHQSE-------VYSVAFSPDNR-QILSAGAEREIK  143 (343)
T ss_dssp             EEEEETT---SEEEEEETTSSCEE----------------EEEECCCSC-------EEEEEECSSTT-EEEEEETTSCEE
T ss_pred             EEEEcCC---CcEEEEECCCCcEE----------------EEEcCCCCc-------EEEEEECCCCC-EEEEEcCCCEEE
Confidence            9999887   57777876543110                001112111       22344588888 899999999999


Q ss_pred             EEeCCCCceeeeee---CCCCcccEEEecCCC----------CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578          233 IWHGKTGKLLGNVD---TNQLKNNMAAISPNG----------RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK  299 (440)
Q Consensus       233 vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  299 (440)
                      +||+.. .......   .|...+.+++|+|++          .+|++++.||.|++||.. .        .....+.+|.
T Consensus       144 ~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~--------~~~~~~~~h~  213 (343)
T 2xzm_R          144 LWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F--------QIRYTFKAHE  213 (343)
T ss_dssp             EEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T--------EEEEEEECCS
T ss_pred             EEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C--------ceeEEEcCcc
Confidence            999984 3333332   677889999999987          789999999999999942 1        2456788999


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEE
Q 013578          300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ  379 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~  379 (440)
                      ..|.+++|+|++++|++++.|+.|++||+......      ...+        .+...|.+++|+|++++++++.|+.|+
T Consensus       214 ~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~------~~~~--------~~~~~v~~v~~sp~~~~la~~~d~~v~  279 (343)
T 2xzm_R          214 SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP------QREF--------DAGSTINQIAFNPKLQWVAVGTDQGVK  279 (343)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC------SEEE--------ECSSCEEEEEECSSSCEEEEEESSCEE
T ss_pred             ccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc------ceee--------cCCCcEEEEEECCCCCEEEEECCCCEE
Confidence            99999999999999999999999999999532211      0100        012348899999999999999999999


Q ss_pred             EEEcCCccchh--hhh----------ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          380 WLSVETGKVLD--TAE----------KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       380 i~d~~~~~~~~--~~~----------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +|++.+++...  .+.          .+|...|++++|+|++        .+|++|+.||.|++|++++++
T Consensus       280 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g--------~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          280 IFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG--------KKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS--------CCEEEEETTSEEEEEEEEEEE
T ss_pred             EEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC--------CeEEEecCCceEEEEEEEccC
Confidence            99998876543  221          2688899999999998        899999999999999987654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.9e-43  Score=309.01  Aligned_cols=295  Identities=17%  Similarity=0.188  Sum_probs=217.1

Q ss_pred             ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCC-----CCC-cceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDD-----ASS-KSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~-----~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      ...|...|.+++|+|||++|++++ |+++|+||...     ... ...........+...|.+++|+|++ .+++++.+ 
T Consensus        26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d-  102 (344)
T 4gqb_B           26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS-  102 (344)
T ss_dssp             CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT-
T ss_pred             cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC-
Confidence            345778899999999999999888 77888887321     000 0000111112244679999999985 67777766 


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK  240 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  240 (440)
                        ..+++|+..........            -.....|...       ..++.++|+++ +|++|+.|++|++||+.+++
T Consensus       103 --g~v~lWd~~~~~~~~~~------------~~~~~~H~~~-------V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~  160 (344)
T 4gqb_B          103 --GAVELWELDENETLIVS------------KFCKYEHDDI-------VSTVSVLSSGT-QAVSGSKDICIKVWDLAQQV  160 (344)
T ss_dssp             --SEEEEEEECTTSSCEEE------------EEEEECCSSC-------EEEEEECTTSS-EEEEEETTSCEEEEETTTTE
T ss_pred             --CEEEEEeccCCCceeEe------------eccccCCCCC-------EEEEEECCCCC-EEEEEeCCCeEEEEECCCCc
Confidence              46777776543110000            0000112211       22344588888 99999999999999999999


Q ss_pred             eeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeee--eccccceEEEEEcCC-CCEEEE
Q 013578          241 LLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL--KGHKSAVTWLCFAPN-SEQIIT  316 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~-~~~l~s  316 (440)
                      ++..+.+|...|.+++|++++. +|++++.|+.|++||++.++        ....+  ..|...+.+++|+|+ +.+|++
T Consensus       161 ~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~p~~~~~l~s  232 (344)
T 4gqb_B          161 VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--------PASQIGCSAPGYLPTSLAWHPQQSEVFVF  232 (344)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--------CEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred             EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc--------eeeeeecceeeccceeeeecCCCCcceEE
Confidence            9999999999999999999885 78999999999999997665        33333  345667999999995 568899


Q ss_pred             EeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEEEec-CCEEEEEEcCCccchhhhhc
Q 013578          317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILAATH-GSTLQWLSVETGKVLDTAEK  394 (440)
Q Consensus       317 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~-~~~i~i~d~~~~~~~~~~~~  394 (440)
                      |+.||+|++||+++++++.              ...+|...|.+++|+|++ ++|++|+ |+.|++||+.+++++. + .
T Consensus       233 g~~dg~v~~wd~~~~~~~~--------------~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-~  296 (344)
T 4gqb_B          233 GDENGTVSLVDTKSTSCVL--------------SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-Q  296 (344)
T ss_dssp             EETTSEEEEEESCC--CCE--------------EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-C
T ss_pred             eccCCcEEEEECCCCcEEE--------------EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-c
Confidence            9999999999998764321              223566779999999998 5788765 8999999999998764 3 5


Q ss_pred             cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       395 ~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +|.+.|++++|+|++.       .+|+|||.||+|++|++++.
T Consensus       297 ~H~~~V~~v~~sp~~~-------~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          297 AHRDFVRDATWSPLNH-------SLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             CCSSCEEEEEECSSST-------TEEEEEETTSCEEEEECCC-
T ss_pred             CCCCCEEEEEEeCCCC-------eEEEEEcCCCeEEEEECCCC
Confidence            8999999999999871       46889999999999999764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-42  Score=300.43  Aligned_cols=310  Identities=17%  Similarity=0.247  Sum_probs=225.0

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec-CC-CCCCCceEEEccCCCeEEEEeecC
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN-LP-PGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~-~~-~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      .+++|.+|.+.|++++|+|+  +||+|+.|++|++|++..+...   ..... .. |...|.+++|+|++++|++++.| 
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-   79 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT---LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD-   79 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE---EEEEECTTCCCSCEEEEEECTTSSEEEEEETT-
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE---EEEEEecCCccCCEEEEEECCCCCEEEEEeCC-
Confidence            46789999999999999987  9999999999999999865322   22222 33 88899999999999999999987 


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC--
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT--  238 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~--  238 (440)
                        ..+.+|+........         ...........|...       ...+.++|+++ +|++|+.|++|++||+..  
T Consensus        80 --~~v~iw~~~~~~~~~---------~~~~~~~~~~~h~~~-------V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~  140 (330)
T 2hes_X           80 --STVSIWAKEESADRT---------FEMDLLAIIEGHENE-------VKGVAWSNDGY-YLATCSRDKSVWIWETDESG  140 (330)
T ss_dssp             --SCEEEEEC----------------CCCEEEEEEC----C-------EEEEEECTTSC-EEEEEETTSCEEEEECCTTC
T ss_pred             --CcEEEEEcccCcCcc---------ccceeEEEEcCCCCc-------EEEEEECCCCC-EEEEEeCCCEEEEEeccCCC
Confidence              466777653211000         000000011112221       23345588888 999999999999999943  


Q ss_pred             --CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC--CCEE
Q 013578          239 --GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN--SEQI  314 (440)
Q Consensus       239 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l  314 (440)
                        .+++..+..|...|.+++|+|++++|++|+.|+.|++||+....      ..++..+.+|.+.|.+++|+|+  +.+|
T Consensus       141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l  214 (330)
T 2hes_X          141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD------WECVAVLNGHEGTVWSSDFDKTEGVFRL  214 (330)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred             CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC------eeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence              24567788899999999999999999999999999999986431      2356788899999999999998  6789


Q ss_pred             EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCcc--chhhh
Q 013578          315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGK--VLDTA  392 (440)
Q Consensus       315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~--~~~~~  392 (440)
                      ++++.|++|++||++.......     ............|...|.+++|++++.+++++.|+.|++|+..+++  .....
T Consensus       215 ~s~s~D~~v~iw~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  289 (330)
T 2hes_X          215 CSGSDDSTVRVWKYMGDDEDDQ-----QEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR  289 (330)
T ss_dssp             EEEETTSCEEEEEEEEECTTSC-----EEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             EEEeCCCeEEEEEecCCCcccc-----ceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc
Confidence            9999999999999975422100     0000001111235667999999988755555679999999998874  33333


Q ss_pred             hccccC-CeEEEEecC--CCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          393 EKAHEG-EITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       393 ~~~h~~-~v~~v~~~~--~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ..+|.. .|++++|+|  ++        .+|++|+.||+|++|+++.
T Consensus       290 ~~~h~~~~v~~v~~~~~~~~--------~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          290 ALCHGVYEINVVKWLELNGK--------TILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             SCTTTTSCEEEEEEC-------------CCEEEEETTSEEEEEEC--
T ss_pred             ccccccceEEEEEEecCCCc--------eEEEEecCCCcEEEEEecc
Confidence            246877 899999999  55        7999999999999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.8e-41  Score=294.21  Aligned_cols=294  Identities=20%  Similarity=0.327  Sum_probs=232.5

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ....++.+|.+.|++++|+|+|++|++|+.||.|++|++.++.     .......|...|.+++|+|+++++++++.+  
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--   86 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSNLLVSASDD--   86 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----cchhhccCCCceEEEEEcCCCCEEEEECCC--
Confidence            3466789999999999999999999999999999999998764     344556788999999999999999999887  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                       ..+.+|+........                ....+...       ...+.++|++. ++++++.|+.|++||+++++.
T Consensus        87 -~~i~vwd~~~~~~~~----------------~~~~~~~~-------v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~  141 (312)
T 4ery_A           87 -KTLKIWDVSSGKCLK----------------TLKGHSNY-------VFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKC  141 (312)
T ss_dssp             -SEEEEEETTTCCEEE----------------EEECCSSC-------EEEEEECSSSS-EEEEEETTSCEEEEETTTCCE
T ss_pred             -CEEEEEECCCCcEEE----------------EEcCCCCC-------EEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEE
Confidence             567777765431110                00111111       12233477777 899999999999999999999


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-eccccceEEEEEcCCCCEEEEEeCC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-KGHKSAVTWLCFAPNSEQIITASKD  320 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~d  320 (440)
                      +..+..|...+.+++|+|++++|++++.||.|++||++.++        .+..+ ..+...+.+++|+|++++|++++.|
T Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  213 (312)
T 4ery_A          142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--------CLKTLIDDDNPPVSFVKFSPNGKYILAATLD  213 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------EEEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred             EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------eeeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence            99999999999999999999999999999999999986554        33333 3466789999999999999999999


Q ss_pred             CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCC
Q 013578          321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGE  399 (440)
Q Consensus       321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~  399 (440)
                      +.|++||++++..+....           ........+......+++.+|++|+ |+.|++||+.+++.+..+ .+|.+.
T Consensus       214 ~~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~  281 (312)
T 4ery_A          214 NTLKLWDYSKGKCLKTYT-----------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHTDV  281 (312)
T ss_dssp             TEEEEEETTTTEEEEEEC-----------SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE-CCCSSC
T ss_pred             CeEEEEECCCCcEEEEEE-----------ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh-hccCCc
Confidence            999999998765432110           0011111122233346788888876 899999999999999888 589999


Q ss_pred             eEEEEecCCCCCCCCCcceEEEEee--CCCeEEEEeCC
Q 013578          400 ITCMAWAPKTIPMGNQQVSVLATSS--VDKKVKLWLAP  435 (440)
Q Consensus       400 v~~v~~~~~~~~~~~~~~~~l~t~~--~Dg~i~vw~~~  435 (440)
                      |.+++|+|++        .+|++++  .|++|++|+.+
T Consensus       282 v~~~~~~p~~--------~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          282 VISTACHPTE--------NIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEEEECSSS--------SEEEEEECTTTCCEEEEECC
T ss_pred             EEEEeecCcC--------CceEEEEccCCccEEEecCC
Confidence            9999999998        8999987  69999999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.6e-41  Score=322.97  Aligned_cols=331  Identities=16%  Similarity=0.180  Sum_probs=242.6

Q ss_pred             CCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec-------CC
Q 013578           68 HSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN-------LP  136 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~-------~~  136 (440)
                      .++++.|+..++|..    .+.++.+|.+.|++++|+|||++||+|+.|++|++||+.++...     ...       ..
T Consensus       163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~-----~~~~~~~~~~~~  237 (611)
T 1nr0_A          163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT-----GVFEDDSLKNVA  237 (611)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-----EECBCTTSSSCS
T ss_pred             EEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe-----eeeccccccccc
Confidence            566777888888864    35678999999999999999999999999999999999876521     222       16


Q ss_pred             CCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccccccccc-------------------CCCCCCceeeccccc
Q 013578          137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ-------------------SKLPGPEIKWEHHKV  197 (440)
Q Consensus       137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~  197 (440)
                      |.+.|.+++|+|++++|++++.|   ..+.+|+.............                   .........|+....
T Consensus       238 h~~~V~~v~~spdg~~l~s~s~D---~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~  314 (611)
T 1nr0_A          238 HSGSVFGLTWSPDGTKIASASAD---KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG  314 (611)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT
T ss_pred             cCCCEEEEEECCCCCEEEEEeCC---CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC
Confidence            88999999999999999999987   57778876543221111000                   001112233433222


Q ss_pred             ccceeEEEe-ecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee-eC----------------------------
Q 013578          198 HDKRAILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV-DT----------------------------  247 (440)
Q Consensus       198 ~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~----------------------------  247 (440)
                      ........+ .....+.++|+++ +|++++.|++|++||+.+++....+ ..                            
T Consensus       315 ~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w  393 (611)
T 1nr0_A          315 SIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV  393 (611)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEe
Confidence            111111111 1223455688888 8999999999999998876543221 00                            


Q ss_pred             -----------------------------------------------------CCCcccEEEecCCCCeEEEEecCCCEE
Q 013578          248 -----------------------------------------------------NQLKNNMAAISPNGRFLAAAAFTADVK  274 (440)
Q Consensus       248 -----------------------------------------------------~~~~v~~~~~s~~~~~l~~~~~dg~i~  274 (440)
                                                                           +...+.+++|+|+|++|++|+.|++|+
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~  473 (611)
T 1nr0_A          394 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH  473 (611)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEE
Confidence                                                                 123356889999999999999999999


Q ss_pred             EEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCc-cccccCCCCccccccccccCCCC
Q 013578          275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINV-RYHLDEDPKTLKVLPIPLLDSNG  353 (440)
Q Consensus       275 i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  353 (440)
                      +||+....      ...... .+|...|++++|+|+|++|++++.|++|++||+.+ .....            .....+
T Consensus       474 lwd~~~~~------~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~------------~~~~~~  534 (611)
T 1nr0_A          474 VYKLSGAS------VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH------------TNSWTF  534 (611)
T ss_dssp             EEEEETTE------EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC------------CCCCCC
T ss_pred             EEEccCCc------eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee------------eeeeee
Confidence            99986432      112233 67999999999999999999999999999999986 22210            001123


Q ss_pred             CeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchh-hhhccc-cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578          354 ATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLD-TAEKAH-EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK  430 (440)
Q Consensus       354 ~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~-~~~~~h-~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~  430 (440)
                      |...|.+++|+|||++|++|+ |+.|++||+.+++... ....+| .+.|++++|+|++        . |++++.|++|+
T Consensus       535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~--------~-l~s~~~D~~i~  605 (611)
T 1nr0_A          535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--------T-IVSAGQDSNIK  605 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT--------E-EEEEETTSCEE
T ss_pred             cccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCC--------E-EEEecCCCCEE
Confidence            677899999999999999876 9999999999876332 233589 8999999999997        6 99999999999


Q ss_pred             EEeCC
Q 013578          431 LWLAP  435 (440)
Q Consensus       431 vw~~~  435 (440)
                      +|+++
T Consensus       606 lW~~~  610 (611)
T 1nr0_A          606 FWNVP  610 (611)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99984

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.8e-41  Score=302.68  Aligned_cols=308  Identities=19%  Similarity=0.265  Sum_probs=224.0

Q ss_pred             cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec---------------CCCCCCCceEEEccCCCe
Q 013578           88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN---------------LPPGGPPTAVAFADNATS  152 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~---------------~~~~~~v~~v~~~~~~~~  152 (440)
                      .+|.+.|.+++|+|||++||+|+ |++++||++.++....  .+...               ..+...|.+++|+|++++
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  137 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA--RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  137 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE--EECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE--EecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence            37999999999999999999987 6899999998765321  11000               011224889999999999


Q ss_pred             EEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEE
Q 013578          153 IVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDIS  232 (440)
Q Consensus       153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  232 (440)
                      +++++.+   ..+.+|+.......                .....|...+       ..+.++|++. +|++++.|++|+
T Consensus       138 l~s~~~d---~~i~iwd~~~~~~~----------------~~~~~h~~~v-------~~~~~~p~~~-~l~s~s~d~~v~  190 (393)
T 1erj_A          138 LATGAED---RLIRIWDIENRKIV----------------MILQGHEQDI-------YSLDYFPSGD-KLVSGSGDRTVR  190 (393)
T ss_dssp             EEEEETT---SCEEEEETTTTEEE----------------EEECCCSSCE-------EEEEECTTSS-EEEEEETTSEEE
T ss_pred             EEEEcCC---CeEEEEECCCCcEE----------------EEEccCCCCE-------EEEEEcCCCC-EEEEecCCCcEE
Confidence            9999887   56777775543110                0011122211       2334578888 899999999999


Q ss_pred             EEeCCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee-------eeccccceEE
Q 013578          233 IWHGKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ-------LKGHKSAVTW  304 (440)
Q Consensus       233 vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~h~~~v~~  304 (440)
                      +||+++++....+.. ...+.+++|+| ++++|++|+.|+.|++||++.+.        .+..       ..+|...|.+
T Consensus       191 iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~--------~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          191 IWDLRTGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF--------LVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             EEETTTTEEEEEEEC-SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC--------EEEEEC------CCCSSCEEE
T ss_pred             EEECCCCeeEEEEEc-CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc--------EEEeecccccCCCCCCCCEEE
Confidence            999999988877764 45789999999 89999999999999999986543        2222       2579999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEc
Q 013578          305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSV  383 (440)
Q Consensus       305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~  383 (440)
                      ++|+|++++|++++.|++|++||+++...........  .........+|...|.+++|+|++++|++|+ |+.|++||.
T Consensus       262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~  339 (393)
T 1erj_A          262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN--SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK  339 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC--CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            9999999999999999999999998654321110000  0001112235666789999999999999876 899999999


Q ss_pred             CCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       384 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      .+++.+..+ .+|.+.|.+++|+++....  .++.+|+||+.||+|+||++...++
T Consensus       340 ~~~~~~~~l-~~h~~~v~~v~~~~~~~~~--p~~~~l~sgs~Dg~i~iW~~~~~~p  392 (393)
T 1erj_A          340 KSGNPLLML-QGHRNSVISVAVANGSSLG--PEYNVFATGSGDCKARIWKYKKIAP  392 (393)
T ss_dssp             TTCCEEEEE-ECCSSCEEEEEECSSCTTC--TTCEEEEEEETTSEEEEEEEEEC--
T ss_pred             CCCeEEEEE-CCCCCCEEEEEecCCcCcC--CCCCEEEEECCCCcEEECcccccCC
Confidence            999998888 5999999999998731000  0117999999999999999977654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.1e-41  Score=317.13  Aligned_cols=296  Identities=26%  Similarity=0.424  Sum_probs=239.1

Q ss_pred             CCCCCCCCcccCcc---ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578           69 SHGDKDQNKRHHPL---DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA  145 (440)
Q Consensus        69 ~~~~~~~~~~~~~~---~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~  145 (440)
                      .++..++..+.|..   .+..+.+|.+.|++++|+|++++|++++.||+|++||+....      ......|...+.+++
T Consensus       278 ~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~------~~~~~~~~~~v~~~~  351 (577)
T 2ymu_A          278 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH------LQTLTGHSSSVWGVA  351 (577)
T ss_dssp             EEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE------EEEECCCSSCEEEEE
T ss_pred             EEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe------eEEEeCCCCCEEEEE
Confidence            34455666666643   466788999999999999999999999999999999986542      344567788999999


Q ss_pred             EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578          146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC  225 (440)
Q Consensus       146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  225 (440)
                      |+|+++++++++.+   ..+.+|+.....                 ......+...       ...+.++|+++ +|+++
T Consensus       352 ~s~~g~~l~~~~~d---g~v~~~~~~~~~-----------------~~~~~~~~~~-------v~~~~~s~dg~-~l~~~  403 (577)
T 2ymu_A          352 FSPDGQTIASASDD---KTVKLWNRNGQL-----------------LQTLTGHSSS-------VRGVAFSPDGQ-TIASA  403 (577)
T ss_dssp             ECTTSSEEEEEETT---SEEEEEETTCCE-----------------EEEEECCSSC-------EEEEEECTTSS-CEEEE
T ss_pred             ECCCCCEEEEEeCC---CEEEEEcCCCCE-----------------EEEecCCCCC-------eEEEEECCCCC-EEEEE
Confidence            99999999999876   456666532211                 0001111111       12334578888 89999


Q ss_pred             eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578          226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL  305 (440)
Q Consensus       226 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~  305 (440)
                      +.|+.|++||. +++.+..+..|...+.+++|+|++++|++++.|+.|++||... +        .+..+.+|...|.++
T Consensus       404 ~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~--------~~~~~~~~~~~v~~~  473 (577)
T 2ymu_A          404 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q--------LLQTLTGHSSSVRGV  473 (577)
T ss_dssp             ETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C--------EEEEEECCSSCEEEE
T ss_pred             eCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C--------EEEEEcCCCCCEEEE
Confidence            99999999995 5788888999999999999999999999999999999999532 1        566788999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578          306 CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE  384 (440)
Q Consensus       306 ~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~  384 (440)
                      +|+|++++|++++.|+.|++||... ..+              ....+|...|++++|+|+|++|++++ |+.|++||. 
T Consensus       474 ~~spd~~~las~~~d~~i~iw~~~~-~~~--------------~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-  537 (577)
T 2ymu_A          474 AFSPDGQTIASASDDKTVKLWNRNG-QLL--------------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-  537 (577)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTS-CEE--------------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-
T ss_pred             EEcCCCCEEEEEeCCCEEEEEcCCC-CEE--------------EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-
Confidence            9999999999999999999999642 211              11235667799999999999999865 899999995 


Q ss_pred             CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       385 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      +++++..+ .+|.+.|++++|+||+        ++|+|++.|++|++||
T Consensus       538 ~~~~~~~~-~~h~~~v~~~~fs~dg--------~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          538 NGQLLQTL-TGHSSSVWGVAFSPDG--------QTIASASSDKTVKLWN  577 (577)
T ss_dssp             TSCEEEEE-ECCSSCEEEEEECTTS--------SCEEEEETTSCEEEEC
T ss_pred             CCCEEEEE-cCCCCCEEEEEEcCCC--------CEEEEEeCCCEEEEeC
Confidence            67888777 5999999999999998        8999999999999997

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.4e-40  Score=284.80  Aligned_cols=258  Identities=22%  Similarity=0.303  Sum_probs=206.8

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      +..+.+|.+.|++++|+|+|++||||+.|++|+||++......   ......+|.++|.+++|+++.             
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~---~~~~l~gH~~~V~~v~~s~~~-------------   65 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK---LIDTLTGHEGPVWRVDWAHPK-------------   65 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC---CCEEECCCSSCEEEEEECCGG-------------
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE---EEEEEccccCCeEEEEecCCC-------------
Confidence            3467899999999999999999999999999999999754322   334556888999999997531             


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--e
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--L  241 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~  241 (440)
                                                                           ++. +|++|+.|++|++||+++++  .
T Consensus        66 -----------------------------------------------------~g~-~l~s~s~D~~v~iWd~~~~~~~~   91 (297)
T 2pm7_B           66 -----------------------------------------------------FGT-ILASCSYDGKVMIWKEENGRWSQ   91 (297)
T ss_dssp             -----------------------------------------------------GCS-EEEEEETTTEEEEEEBSSSCBCC
T ss_pred             -----------------------------------------------------cCC-EEEEEcCCCEEEEEEcCCCceEE
Confidence                                                                 112 78999999999999998874  5


Q ss_pred             eeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC---------
Q 013578          242 LGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN---------  310 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---------  310 (440)
                      +..+..|...|.+++|+|+  +.+|++++.|+.|++||++....      .....+.+|...|.+++|+|+         
T Consensus        92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~  165 (297)
T 2pm7_B           92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT------TSPIIIDAHAIGVNSASWAPATIEEDGEHN  165 (297)
T ss_dssp             CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC------BCCEEEECCSSCEEEEEECCCC--------
T ss_pred             EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc------eeeeeeecccCccceEeecCCcccccccCC
Confidence            5667788899999999997  89999999999999999975431      013457789999999999997         


Q ss_pred             ----CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC---CEEEEec-CCEEEEEE
Q 013578          311 ----SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG---KILAATH-GSTLQWLS  382 (440)
Q Consensus       311 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~-~~~i~i~d  382 (440)
                          +++|++++.|++|++||+++.....      .    ......+|...|.+++|+|++   .+|++++ |+.|++||
T Consensus       166 ~~~~~~~l~sgs~D~~v~lwd~~~~~~~~------~----~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          166 GTKESRKFVTGGADNLVKIWKYNSDAQTY------V----LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             ----CCEEEEEETTSCEEEEEEETTTTEE------E----EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             CCCCcceEEEEcCCCcEEEEEEcCCCceE------E----EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence                5789999999999999997543100      0    012234677789999999995   7888865 99999999


Q ss_pred             cCCccc--h-hhh-hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          383 VETGKV--L-DTA-EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       383 ~~~~~~--~-~~~-~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      +.++..  . ..+ ...|...|.+++|+|++        .+|++++.||+|++|+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--------~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSG--------NVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSS--------CCEEEEETTSCEEEEEEC
T ss_pred             eCCCCCccceeeeecccCCCcEEEEEECCCC--------CEEEEEcCCCcEEEEEEC
Confidence            987531  1 111 13688899999999998        899999999999999976

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-39  Score=314.79  Aligned_cols=294  Identities=19%  Similarity=0.240  Sum_probs=230.4

Q ss_pred             ccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           85 NTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      ..+++|++.|++++|+|++ ++|+||+.||+|++|++...............+|...|.+++|+|++++|++++.+   .
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D---g  452 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD---G  452 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT---S
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC---C
Confidence            4688999999999999864 79999999999999999875443333445567888999999999999999999987   5


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                      .+++|+........                ....|...       ...+.++++++ ++++++.|++|++||........
T Consensus       453 ~v~vwd~~~~~~~~----------------~~~~h~~~-------v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~  508 (694)
T 3dm0_A          453 ELRLWDLAAGVSTR----------------RFVGHTKD-------VLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYT  508 (694)
T ss_dssp             EEEEEETTTTEEEE----------------EEECCSSC-------EEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEE
T ss_pred             cEEEEECCCCccee----------------EEeCCCCC-------EEEEEEeCCCC-EEEEEeCCCEEEEEECCCCccee
Confidence            77788765432110                01112222       22334578888 89999999999999986543322


Q ss_pred             ee---eCCCCcccEEEecCCC--CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578          244 NV---DTNQLKNNMAAISPNG--RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       244 ~~---~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                      ..   ..|...|.+++|+|++  ..|++++.|+.|++||++..+        ....+.+|.+.|++++|+|++++|++++
T Consensus       509 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~--------~~~~~~~h~~~v~~v~~spdg~~l~sg~  580 (694)
T 3dm0_A          509 ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK--------LRSTLAGHTGYVSTVAVSPDGSLCASGG  580 (694)
T ss_dssp             ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc--------EEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence            22   3577789999999987  589999999999999986554        6677889999999999999999999999


Q ss_pred             CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhc----
Q 013578          319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEK----  394 (440)
Q Consensus       319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~----  394 (440)
                      .||+|++||++++..+...               .+...+.+++|+|++.+|+++.++.|++||+.+++.+..+..    
T Consensus       581 ~Dg~i~iwd~~~~~~~~~~---------------~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~  645 (694)
T 3dm0_A          581 KDGVVLLWDLAEGKKLYSL---------------EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKA  645 (694)
T ss_dssp             TTSBCEEEETTTTEEEECC---------------BCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC-
T ss_pred             CCCeEEEEECCCCceEEEe---------------cCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccc
Confidence            9999999999876543211               112348899999999999999999999999999887655421    


Q ss_pred             --------------cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          395 --------------AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       395 --------------~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                                    .+...+++++|+|++        .+|++|+.||+|+||++..
T Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~l~~spdg--------~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          646 EAEKADNSGPAATKRKVIYCTSLNWSADG--------STLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             ---------------CCCCEEEEEECTTS--------SEEEEEETTSEEEEEEC--
T ss_pred             ccccccccccccCCceeEEeeeEEEcCCC--------CEEEEEcCCCeEEEEeccC
Confidence                          111237899999999        8999999999999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.8e-40  Score=301.96  Aligned_cols=304  Identities=14%  Similarity=0.198  Sum_probs=220.7

Q ss_pred             ccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEcc-CCCeEEEEeecCCc
Q 013578           85 NTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFAD-NATSIVVATHNLSG  162 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~~~~~  162 (440)
                      ....+|...|+||+|+| ++++||+|+.||+|+|||+......   ......+|.+.|.+|+|+| ++.+|++++.|   
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D---  186 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---TFIKGIGAGGSITGLKFNPLNTNQFYASSME---  186 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---EEECCCSSSCCCCEEEECSSCTTEEEEECSS---
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---eEEEccCCCCCEEEEEEeCCCCCEEEEEeCC---
Confidence            34567999999999999 5779999999999999999876543   3344567889999999998 67899999887   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ..+.+|+...........              ....       ......+.+++++. +|++|+.|+.|++||++ ++.+
T Consensus       187 ~~v~iwd~~~~~~~~~~~--------------~~~~-------~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~-~~~~  243 (435)
T 4e54_B          187 GTTRLQDFKGNILRVFAS--------------SDTI-------NIWFCSLDVSASSR-MVVTGDNVGNVILLNMD-GKEL  243 (435)
T ss_dssp             SCEEEEETTSCEEEEEEC--------------CSSC-------SCCCCCEEEETTTT-EEEEECSSSBEEEEESS-SCBC
T ss_pred             CEEEEeeccCCceeEEec--------------cCCC-------CccEEEEEECCCCC-EEEEEeCCCcEeeeccC-ccee
Confidence            467777654321100000              0000       00112234467887 99999999999999986 5667


Q ss_pred             eeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          243 GNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      ..+..|...|.+++|+|++. +|++|+.|+.|++||++.....     .......+|...|++++|+|+|.+|++++.||
T Consensus       244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~-----~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~  318 (435)
T 4e54_B          244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK-----ASFLYSLPHRHPVNAACFSPDGARLLTTDQKS  318 (435)
T ss_dssp             CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS-----SCCSBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred             EEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc-----ceEEEeeeccccccceeECCCCCeeEEEcCCC
Confidence            78889999999999999876 6889999999999998755421     12334567999999999999999999999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-------------CCEEEEEEcCCccc
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-------------GSTLQWLSVETGKV  388 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------------~~~i~i~d~~~~~~  388 (440)
                      .|++||++++..........        ........+..+.|+|++.+++++.             ++.|++||..+++.
T Consensus       319 ~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~  390 (435)
T 4e54_B          319 EIRVYSASQWDCPLGLIPHP--------HRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM  390 (435)
T ss_dssp             CEEEEESSSSSSEEEECCCC--------CCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred             EEEEEECCCCccceEEeccc--------ccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence            99999998765432111000        0000111122345555555554431             35799999999999


Q ss_pred             hhhhhccccCCeEEE-EecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          389 LDTAEKAHEGEITCM-AWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       389 ~~~~~~~h~~~v~~v-~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      +..+..+|...|.++ +|+|++        .+|++|+ |++|+||+++.+++
T Consensus       391 ~~~l~~~~~~~v~s~~~fspdg--------~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          391 MCQLYDPESSGISSLNEFNPMG--------DTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             EEEECCSSCCCCCCEEEECTTS--------SCEEEEC-SSEEEECCCC----
T ss_pred             EEEEeCCCCCcEEEEEEECCCC--------CEEEEEc-CCcEEEEECCcCee
Confidence            888766888999988 699998        7888876 88999999999876

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-41  Score=306.11  Aligned_cols=323  Identities=14%  Similarity=0.156  Sum_probs=229.9

Q ss_pred             ccccccc-cccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCC---CCCcceeeEEecCCCCCCCceEEEccCCCeEEE
Q 013578           81 PLDVNTL-KGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDD---ASSKSFKFLRINLPPGGPPTAVAFADNATSIVV  155 (440)
Q Consensus        81 ~~~~~~l-~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~---~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  155 (440)
                      ...+..+ ++|.+.|++++|+| ++++|++|+.||+|+|||+.+   +...  .. .....|...|.+++|+|+++.+++
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~-~~~~~h~~~v~~~~~~~~~~~l~s  128 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY--SS-SLTYDCSSTVTQITMIPNFDAFAV  128 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC--SC-SEEEECSSCEEEEEECTTSSEEEE
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc--ce-eeeccCCCCEEEEEEeCCCCEEEE
Confidence            3456777 89999999999999 999999999999999999876   3211  11 112247799999999999999999


Q ss_pred             EeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEe
Q 013578          156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWH  235 (440)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd  235 (440)
                      ++.+   ..+.+|+......................+.... +........     ...++++. ++++++.|+.|++||
T Consensus       129 ~s~d---g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~-----~~~~~~~~-~l~~~~~d~~i~iwd  198 (437)
T 3gre_A          129 SSKD---GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFG-KNEYAVRMR-----AFVNEEKS-LLVALTNLSRVIIFD  198 (437)
T ss_dssp             EETT---SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGS-SCCCEEEEE-----EEECSSCE-EEEEEETTSEEEEEE
T ss_pred             EeCC---CEEEEEEeccccCCceeeccccceeEEEEccCcc-cccCceEEE-----EEEcCCCC-EEEEEeCCCeEEEEe
Confidence            9987   4677776532100000000000000000000000 000011000     11245565 999999999999999


Q ss_pred             CCCCceeeeeeC--CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-ccccceEEEEEc----
Q 013578          236 GKTGKLLGNVDT--NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-GHKSAVTWLCFA----  308 (440)
Q Consensus       236 ~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~----  308 (440)
                      +++++.+..+..  |...|.+++|+|++++|++|+.||.|++||++.+.        .+..+. .|...|.+++|+    
T Consensus       199 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~s  270 (437)
T 3gre_A          199 IRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV--------LIRSWSFGDHAPITHVEVCQFYG  270 (437)
T ss_dssp             TTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE--------EEEEEBCTTCEEEEEEEECTTTC
T ss_pred             CCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc--------EEEEEecCCCCceEEEEeccccC
Confidence            999999999987  78899999999999999999999999999997643        555554 688899999665    


Q ss_pred             CCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccc------------cCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578          309 PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL------------LDSNGATLQYDRLSLSSDGKILAATH-G  375 (440)
Q Consensus       309 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~s~~g~~l~~~~-~  375 (440)
                      |++.+|++++.||.|++||++++.++..............            .....+...|.+++|+ ++++|++|+ |
T Consensus       271 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d  349 (437)
T 3gre_A          271 KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT  349 (437)
T ss_dssp             TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG
T ss_pred             CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC
Confidence            4678999999999999999997765432111100000000            1112267789999999 778888876 9


Q ss_pred             CEEEEEEcCCccchhhhhc------------------------------------cccCCeEEEEecCC--CCCCCCCcc
Q 013578          376 STLQWLSVETGKVLDTAEK------------------------------------AHEGEITCMAWAPK--TIPMGNQQV  417 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~------------------------------------~h~~~v~~v~~~~~--~~~~~~~~~  417 (440)
                      +.|++||+.+++....+..                                    .|.+.|++++|+++  +        
T Consensus       350 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~--------  421 (437)
T 3gre_A          350 SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET--------  421 (437)
T ss_dssp             TEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS--------
T ss_pred             CeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc--------
Confidence            9999999999987766531                                    28999999999998  4        


Q ss_pred             eEEEEeeCCCeEEEEe
Q 013578          418 SVLATSSVDKKVKLWL  433 (440)
Q Consensus       418 ~~l~t~~~Dg~i~vw~  433 (440)
                      .+|++|+.||.|+||+
T Consensus       422 ~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          422 PLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEEETTSCEEEEC
T ss_pred             eEEEEEcCCceEEEeC
Confidence            7999999999999995

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-39  Score=289.39  Aligned_cols=291  Identities=12%  Similarity=0.147  Sum_probs=234.8

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ....|.+|.+.|++++|+|+|++|++|+.||.|++||+.++.     .......|...|.+++|+|+++++++++.+   
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---   95 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----RLGTLDGHTGTIWSIDVDCFTKYCVTGSAD---   95 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----hhhhhhhcCCcEEEEEEcCCCCEEEEEeCC---
Confidence            356789999999999999999999999999999999998764     345566788999999999999999999877   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC-----ceEEEEeCC
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG-----TDISIWHGK  237 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~vwd~~  237 (440)
                      ..+.+|+........                        .+........+.+++++. ++++++.+     +.|++||+.
T Consensus        96 g~i~iwd~~~~~~~~------------------------~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~  150 (369)
T 3zwl_B           96 YSIKLWDVSNGQCVA------------------------TWKSPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIE  150 (369)
T ss_dssp             TEEEEEETTTCCEEE------------------------EEECSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEE
T ss_pred             CeEEEEECCCCcEEE------------------------EeecCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEec
Confidence            467777655431111                        011111223344578888 88888888     999999987


Q ss_pred             CCc-----------eeeeeeCCCC--cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578          238 TGK-----------LLGNVDTNQL--KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW  304 (440)
Q Consensus       238 ~~~-----------~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (440)
                      .+.           .+..+..+..  .+.+++|+|++++|++++.||.|++||++...       .....+..|...|.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~  223 (369)
T 3zwl_B          151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-------EYVDSIDLHEKSISD  223 (369)
T ss_dssp             ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-------EEEEEEECCSSCEEE
T ss_pred             CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-------EeEEEEecCCCceeE
Confidence            654           2333444444  89999999999999999999999999986522       256778889999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC-------
Q 013578          305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS-------  376 (440)
Q Consensus       305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~-------  376 (440)
                      ++|+|++.+|++++.|+.|++||+++......       +        .+...+..++|+|++++++++. ++       
T Consensus       224 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-------~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  288 (369)
T 3zwl_B          224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK-------Y--------ETDCPLNTAVITPLKEFIILGGGQEAKDVTTT  288 (369)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEE-------E--------ECSSCEEEEEECSSSSEEEEEECCC-------
T ss_pred             EEECCCCCEEEEecCCceEEEEECCCCceeee-------e--------cCCCCceeEEecCCCceEEEeecCCCceEEEE
Confidence            99999999999999999999999986543311       1        0234578899999999999865 44       


Q ss_pred             -------EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          377 -------TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       377 -------~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                             .+++||..+++.+..+ .+|.+.|++++|+|++        .+|++++.||.|++|+++.+
T Consensus       289 ~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~--------~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          289 SANEGKFEARFYHKIFEEEIGRV-QGHFGPLNTVAISPQG--------TSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             ------CEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTS--------SEEEEEETTSEEEEEEECHH
T ss_pred             ecCCCcceeEEEecCCCcchhhe-ecccCcEEEEEECCCC--------CEEEEEcCCCeEEEEECccc
Confidence                   8999999999999888 5899999999999998        89999999999999998753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.2e-40  Score=288.19  Aligned_cols=257  Identities=16%  Similarity=0.229  Sum_probs=200.3

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS  164 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~  164 (440)
                      ..+.+|.+.|++++|+|+|++||||+.|++|+|||+.++..   .......+|...|.+++|+++.              
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---~~~~~l~gH~~~V~~v~~~~~~--------------   69 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---ILIADLRGHEGPVWQVAWAHPM--------------   69 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---EEEEEEECCSSCEEEEEECCGG--------------
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---EEEEEEcCCCccEEEEEeCCCC--------------
Confidence            35679999999999999999999999999999999986532   1334456788999999997531              


Q ss_pred             EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--ee
Q 013578          165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--LL  242 (440)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~  242 (440)
                                                                          ++. +|++|+.|++|++||+++++  .+
T Consensus        70 ----------------------------------------------------~~~-~l~s~s~D~~v~iWd~~~~~~~~~   96 (316)
T 3bg1_A           70 ----------------------------------------------------YGN-ILASCSYDRKVIIWREENGTWEKS   96 (316)
T ss_dssp             ----------------------------------------------------GSS-CEEEEETTSCEEEECCSSSCCCEE
T ss_pred             ----------------------------------------------------CCC-EEEEEECCCEEEEEECCCCcceEE
Confidence                                                                111 78899999999999998873  56


Q ss_pred             eeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC----------
Q 013578          243 GNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN----------  310 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~----------  310 (440)
                      ..+..|...|.+++|+|+  +.+|++|+.|+.|++||++....     ......+.+|...|.+++|+|+          
T Consensus        97 ~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  171 (316)
T 3bg1_A           97 HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-----WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP  171 (316)
T ss_dssp             EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-----EEECCBTTSSSSCBCCCEECCCCCC------C
T ss_pred             EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-----cceeeeeccccCCcceEEEccccCCccccccc
Confidence            677889999999999998  88999999999999999865421     1124456789999999999997          


Q ss_pred             -------CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC----CEEEEec-CCEE
Q 013578          311 -------SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG----KILAATH-GSTL  378 (440)
Q Consensus       311 -------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~-~~~i  378 (440)
                             +.+|++++.|++|++||++.....       .    ......+|...|.+++|+|++    .+|++++ |+.|
T Consensus       172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-------~----~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v  240 (316)
T 3bg1_A          172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-------K----EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV  240 (316)
T ss_dssp             CSCCCCCCCBEECCBTTSBCCEEEECTTSCE-------E----EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred             cccCccccceEEEecCCCeEEEEEeCCCCcc-------c----eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence                   468999999999999999643110       0    112234677789999999987    7788765 9999


Q ss_pred             EEEEcCCc---cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          379 QWLSVETG---KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       379 ~i~d~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ++|++.+.   +........|.+.|++++|+|++        .+|++++.||+|++|+..
T Consensus       241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--------~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA--------NILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT--------CCEEEEESSSCEEEEEEC
T ss_pred             EEEEccCccccchhhhhhhcCCCcEEEEEEcCCC--------CEEEEEcCCCeEEEEEEC
Confidence            99999873   21222225789999999999998        899999999999999976

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.9e-39  Score=305.91  Aligned_cols=299  Identities=25%  Similarity=0.426  Sum_probs=241.8

Q ss_pred             CCCCCCCCCcccCcc---ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578           68 HSHGDKDQNKRHHPL---DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV  144 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~---~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v  144 (440)
                      ..++..++..+.|..   .+..+.+|...|++++|+|++++|++++.|++|++|+....      .......|...|.++
T Consensus       236 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~------~~~~~~~h~~~v~~~  309 (577)
T 2ymu_A          236 IASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGV  309 (577)
T ss_dssp             EEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------EEEEECCCSSCEEEE
T ss_pred             EEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------EEEEEecCCCCeEEE
Confidence            344556777777754   46778899999999999999999999999999999997532      344556788999999


Q ss_pred             EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578          145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS  224 (440)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  224 (440)
                      +|+|+++.+++++.+   ..+.+|+......                 .....+...       ...+.++|+++ ++++
T Consensus       310 ~~~~~~~~l~t~~~d---~~i~~w~~~~~~~-----------------~~~~~~~~~-------v~~~~~s~~g~-~l~~  361 (577)
T 2ymu_A          310 AFSPDGQTIASASDD---KTVKLWNRNGQHL-----------------QTLTGHSSS-------VWGVAFSPDGQ-TIAS  361 (577)
T ss_dssp             EECTTSSEEEEEETT---SCEEEEETTSCEE-----------------EEECCCSSC-------EEEEEECTTSS-EEEE
T ss_pred             EECCCCCEEEEEeCC---CeEEEEeCCCCee-----------------EEEeCCCCC-------EEEEEECCCCC-EEEE
Confidence            999999999999877   4566676432210                 000111111       12234578888 8999


Q ss_pred             eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578          225 CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW  304 (440)
Q Consensus       225 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (440)
                      ++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++.|+.|++||.. +        ..+..+.+|...|++
T Consensus       362 ~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~--------~~~~~~~~~~~~v~~  431 (577)
T 2ymu_A          362 ASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G--------QLLQTLTGHSSSVWG  431 (577)
T ss_dssp             EETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C--------CEEEEEECCSSCEEE
T ss_pred             EeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C--------CEEEEecCCCCCeEE
Confidence            999999999995 578888899999999999999999999999999999999952 1        256678899999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEc
Q 013578          305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSV  383 (440)
Q Consensus       305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~  383 (440)
                      ++|+|++++|++++.|++|++||+... .              .....+|...|.+++|+|++++|++++ |+.|++||.
T Consensus       432 ~~~s~d~~~l~~~~~d~~v~~w~~~~~-~--------------~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~  496 (577)
T 2ymu_A          432 VAFSPDDQTIASASDDKTVKLWNRNGQ-L--------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  496 (577)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTSC-E--------------EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             EEECCCCCEEEEEcCCCEEEEEECCCC-E--------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence            999999999999999999999997532 1              111234566789999999999999865 899999995


Q ss_pred             CCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       384 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                       +++.+..+ .+|...|++++|+|++        ++|++++.||.|++||.+
T Consensus       497 -~~~~~~~~-~~h~~~v~~l~~s~dg--------~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          497 -NGQLLQTL-TGHSSSVRGVAFSPDG--------QTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             -TSCEEEEE-ECCSSCEEEEEECTTS--------SCEEEEETTSEEEEECTT
T ss_pred             -CCCEEEEE-eCCCCCEEEEEEcCCC--------CEEEEEECcCEEEEEeCC
Confidence             67877777 5899999999999998        899999999999999964

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.9e-39  Score=281.86  Aligned_cols=268  Identities=16%  Similarity=0.166  Sum_probs=219.2

Q ss_pred             CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578           67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT  142 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~  142 (440)
                      ..+++..|+.+++|..    .++.+.+|..+|.+++|+|++++|++|+.|++|++||+.+++     .......|...|.
T Consensus        27 ~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~-----~~~~~~~h~~~v~  101 (304)
T 2ynn_A           27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----KVVDFEAHPDYIR  101 (304)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEE
T ss_pred             EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc-----EEEEEeCCCCcEE
Confidence            3466778888888865    467888999999999999999999999999999999998765     3344567888999


Q ss_pred             eEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578          143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII  222 (440)
Q Consensus       143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  222 (440)
                      +++|+|+++                                                                     ++
T Consensus       102 ~~~~~~~~~---------------------------------------------------------------------~l  112 (304)
T 2ynn_A          102 SIAVHPTKP---------------------------------------------------------------------YV  112 (304)
T ss_dssp             EEEECSSSS---------------------------------------------------------------------EE
T ss_pred             EEEEcCCCC---------------------------------------------------------------------EE
Confidence            999988765                                                                     68


Q ss_pred             EEeeCCceEEEEeCCCC-ceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          223 ASCSEGTDISIWHGKTG-KLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      ++|+.|++|++||++++ .....+..|...|.+++|+| ++.+|++|+.|+.|++||++....       ......+|..
T Consensus       113 ~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-------~~~~~~~~~~  185 (304)
T 2ynn_A          113 LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-------NFTLTTGQER  185 (304)
T ss_dssp             EEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-------SEEEECCCTT
T ss_pred             EEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-------cceeccCCcC
Confidence            88999999999999887 45567888999999999999 678999999999999999865441       1222345668


Q ss_pred             ceEEEEEcC--CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCE
Q 013578          301 AVTWLCFAP--NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GST  377 (440)
Q Consensus       301 ~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~  377 (440)
                      .|..+.|+|  ++.+|++++.|++|++||++++.++.              ...+|...|..++|+|++++|++|+ |+.
T Consensus       186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~--------------~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~  251 (304)
T 2ynn_A          186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA--------------TLEGHMSNVSFAVFHPTLPIIISGSEDGT  251 (304)
T ss_dssp             CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE--------------EEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce--------------eeCCCCCCEEEEEECCCCCEEEEEcCCCe
Confidence            899999987  77899999999999999998765431              2235667799999999999999876 899


Q ss_pred             EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      |++||..+++.+..+ ..|...+++++|+|++     . ..++++|+.| .+.+|++.+.
T Consensus       252 i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~-~~~~asg~~~-g~~~~~~~~~  303 (304)
T 2ynn_A          252 LKIWNSSTYKVEKTL-NVGLERSWCIATHPTG-----R-KNYIASGFDN-GFTVLSLGND  303 (304)
T ss_dssp             EEEEETTTCCEEEEE-CCSSSSEEEEEECTTC-----G-GGCEEEEETT-EEEEEECC--
T ss_pred             EEEEECCCCceeeec-cCCCccEEEEEECCCC-----C-ceEEEEecCC-ceEEEEeccC
Confidence            999999999999888 5888999999999986     1 1357777655 5888887654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.7e-39  Score=291.01  Aligned_cols=310  Identities=15%  Similarity=0.196  Sum_probs=227.3

Q ss_pred             ccccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEcc-CCCeEEEEeecC
Q 013578           83 DVNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFAD-NATSIVVATHNL  160 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~~~  160 (440)
                      ....+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+....   ......+|...|.+++|+| ++..+++++.+ 
T Consensus        65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-  140 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---SFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-  140 (383)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---EEECCCSTTCBEEEEEEETTEEEEEEEEETT-
T ss_pred             eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---eeeecCCcCCceeEEEeCCCCCCEEEEEeCC-
Confidence            356788999999999999999 99999999999999999876532   2222246889999999999 67888888776 


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK  240 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  240 (440)
                        ..+.+|+......              ..+.....+..       ....+.+++++. ++++++.|+.|++||+ +++
T Consensus       141 --~~i~iwd~~~~~~--------------~~~~~~~~~~~-------~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~  195 (383)
T 3ei3_B          141 --GATTLRDFSGSVI--------------QVFAKTDSWDY-------WYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGH  195 (383)
T ss_dssp             --TEEEEEETTSCEE--------------EEEECCCCSSC-------CEEEEEEETTTT-EEEEEETTSEEEEEET-TSC
T ss_pred             --CEEEEEECCCCce--------------EEEeccCCCCC-------CeEEEEECCCCC-EEEEECCCCCEEEEEC-CCC
Confidence              5677776553210              00000011111       122334477888 9999999999999999 578


Q ss_pred             eeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEe
Q 013578          241 LLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITAS  318 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~  318 (440)
                      .+..+..|...|.+++|+|+++ +|++++.|+.|++||++......    ..+..+ +|...|.+++|+| ++.+|++++
T Consensus       196 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          196 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN----SYIAEM-PHEKPVNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT----CEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred             EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc----ceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence            8889999999999999999999 99999999999999997643111    133334 6999999999999 999999999


Q ss_pred             CCCcEEEEecCccccccCCCCccccc---cccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhcc
Q 013578          319 KDGTLRVWNINVRYHLDEDPKTLKVL---PIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKA  395 (440)
Q Consensus       319 ~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~  395 (440)
                      .|+.|++||+++..............   .............+..++|+|++++ .++.|+.|++||+.+++.+..+...
T Consensus       271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~  349 (383)
T 3ei3_B          271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDP  349 (383)
T ss_dssp             SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred             CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCC
Confidence            99999999998765432111000000   0000000001123445777777777 3345899999999999998887422


Q ss_pred             -ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          396 -HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       396 -h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                       |.+.+.+++|+|++        .+|++|+ ||.|++|++++
T Consensus       350 ~~~~~~~~~~~s~~g--------~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          350 NAAGIISLNKFSPTG--------DVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TBCSCCCEEEECTTS--------SEEEEEE-TTEEEEEECC-
T ss_pred             CCCceEEEEEEecCc--------cEEEEec-CCcEEEEecCC
Confidence             56778888999998        8999997 99999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.3e-38  Score=278.10  Aligned_cols=289  Identities=15%  Similarity=0.185  Sum_probs=231.1

Q ss_pred             cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      ...+|.+.|++++|+|++++|++++ ||.|++|++..+.............|...|.+++|+|+++++++++.+   ..+
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i  121 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA---STL  121 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS---SEE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC---CcE
Confidence            3448999999999999999999999 999999999876543322222334678899999999999999999876   467


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV  245 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  245 (440)
                      .+|+........              ......+..       ....+.++++++ ++++++.|+.|++||+++++.+..+
T Consensus       122 ~~~d~~~~~~~~--------------~~~~~~~~~-------~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~  179 (337)
T 1gxr_A          122 SIWDLAAPTPRI--------------KAELTSSAP-------ACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             EEEECCCC--EE--------------EEEEECSSS-------CEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCcce--------------eeecccCCC-------ceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeee
Confidence            777654431000              000001111       112234477777 8999999999999999999999999


Q ss_pred             eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578          246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV  325 (440)
Q Consensus       246 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i  325 (440)
                      ..|...+.+++|+|++++|++++.||.|++||++..+        .+..+ .|...+.+++|+|++++|++++.|+.|++
T Consensus       180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~  250 (337)
T 1gxr_A          180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR--------QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEV  250 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc--------eEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence            9999999999999999999999999999999986553        33333 47788999999999999999999999999


Q ss_pred             EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEE
Q 013578          326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMA  404 (440)
Q Consensus       326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~  404 (440)
                      ||+++....               ....+...+.+++|+|++++|++++ ++.|++||+.+++.+...  .|...|.+++
T Consensus       251 ~~~~~~~~~---------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~  313 (337)
T 1gxr_A          251 LHVNKPDKY---------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCD  313 (337)
T ss_dssp             EETTSSCEE---------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEE
T ss_pred             EECCCCCeE---------------EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--cCCCcEEEEE
Confidence            999865321               1234556789999999999998865 899999999999887554  5899999999


Q ss_pred             ecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          405 WAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       405 ~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      |+|++        .+|++++.||.|++|++
T Consensus       314 ~s~~~--------~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          314 ISVDD--------KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECTTS--------CEEEEEETTSCEEEEEE
T ss_pred             ECCCC--------CEEEEecCCCeEEEEEE
Confidence            99998        89999999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.3e-39  Score=294.51  Aligned_cols=327  Identities=13%  Similarity=0.137  Sum_probs=232.8

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc-ceeeEEecCCCCCCCceEEEccC----C---CeE
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK-SFKFLRINLPPGGPPTAVAFADN----A---TSI  153 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~~~----~---~~l  153 (440)
                      ...+.+.+|.+.|++++|+|  ++|++|+.||+|++|++...... ..........|...|.+++|+|+    +   ++|
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            34667899999999999998  79999999999999999876511 11223444578899999999999    9   899


Q ss_pred             EEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC----CCCCeE-EEEeeCC
Q 013578          154 VVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT----ADGSTI-IASCSEG  228 (440)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-l~s~~~d  228 (440)
                      ++++.+   ..+.+|+.......           ....+.....+....  .......+.++    +++. + +++++.|
T Consensus        85 ~s~~~d---g~i~iw~~~~~~~~-----------~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-~~l~~~~~d  147 (397)
T 1sq9_A           85 ATTSFS---GDLLFYRITREDET-----------KKVIFEKLDLLDSDM--KKHSFWALKWGASNDRLLS-HRLVATDVK  147 (397)
T ss_dssp             EEEETT---SCEEEEEEEECTTT-----------CCEEEEEECCSCTTG--GGSCEEEEEEECCC----C-EEEEEEETT
T ss_pred             EEEcCC---CCEEEEEccCCccc-----------ccccceeeccccccc--CCCcEEEEEEeeccCCCCc-eEEEEEeCC
Confidence            998877   45666665443210           000011111110000  00111223345    7777 6 9999999


Q ss_pred             ceEEEEeCCC------Cceee-----ee-------eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeee
Q 013578          229 TDISIWHGKT------GKLLG-----NV-------DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       229 ~~i~vwd~~~------~~~~~-----~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  290 (440)
                      +.|++||+.+      ++.+.     .+       ..|...+.+++|+|++ +|++++.||.|++||++...        
T Consensus       148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~--------  218 (397)
T 1sq9_A          148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR--------  218 (397)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE--------
T ss_pred             CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc--------
Confidence            9999999998      66665     66       3478889999999999 99999999999999996543        


Q ss_pred             eeeeeec---c---ccceEEEEEcCCCCEEEEEeCC---CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE
Q 013578          291 SVMQLKG---H---KSAVTWLCFAPNSEQIITASKD---GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL  361 (440)
Q Consensus       291 ~~~~~~~---h---~~~v~~~~~~p~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  361 (440)
                      .+..+..   |   ...|.+++|+|++.+|++++.|   +.|++||++++..+......... .........+...|.++
T Consensus       219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~  297 (397)
T 1sq9_A          219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS-SQASLGEFAHSSWVMSL  297 (397)
T ss_dssp             EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------CCBSBSSCEEEE
T ss_pred             eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc-ccccccccccCCcEEEE
Confidence            5667777   8   9999999999999999999999   99999999876443211100000 00000011156679999


Q ss_pred             EeCCCCCEEEEec-CCEEEEEEcCCccchhhhhc------cc---------------cCCeEEEEecCCCCCC--CCCcc
Q 013578          362 SLSSDGKILAATH-GSTLQWLSVETGKVLDTAEK------AH---------------EGEITCMAWAPKTIPM--GNQQV  417 (440)
Q Consensus       362 ~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~------~h---------------~~~v~~v~~~~~~~~~--~~~~~  417 (440)
                      +|+|++++|++++ |+.|++||+.+++.+..+ .      +|               ...|++++|+|++..+  +..+.
T Consensus       298 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~  376 (397)
T 1sq9_A          298 SFNDSGETLCSAGWDGKLRFWDVKTKERITTL-NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN  376 (397)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred             EECCCCCEEEEEeCCCeEEEEEcCCCceeEEE-ecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence            9999999999876 899999999999988877 4      56               8999999999995100  00011


Q ss_pred             eEEEEeeCCCeEEEEeCCCCC
Q 013578          418 SVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       418 ~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .+|++++.||.|++|++.+++
T Consensus       377 ~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          377 ESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             CEEEEEETTTEEEEEEEEC--
T ss_pred             ceEEEecCCCcEEEEEcCCCC
Confidence            489999999999999998864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.4e-39  Score=286.35  Aligned_cols=305  Identities=13%  Similarity=0.102  Sum_probs=213.1

Q ss_pred             CcceeEEEEccCCCEEEEeeCCC-------cEEEEecCCCCCccee---e--EEecCCCCCCCceEEEccCCCeEEEEee
Q 013578           91 GDSVTGLCFSSDGKCLATACADG-------VIRVHKLDDASSKSFK---F--LRINLPPGGPPTAVAFADNATSIVVATH  158 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg-------~v~vW~~~~~~~~~~~---~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~  158 (440)
                      .-+|++++|+|||++|++||.|.       .|++|++.........   .  ......+...|.++++  ++..++++..
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence            34899999999999999997643       5999999876543211   1  1123456667877765  4567777654


Q ss_pred             cCC--------cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE-EEeeCCc
Q 013578          159 NLS--------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII-ASCSEGT  229 (440)
Q Consensus       159 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~  229 (440)
                      +..        ...+++|+...............       ........       .....+.++|||+.++ ++++.|+
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~-------~~~~~v~fSpDg~~la~as~~~d~  157 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVD-------FDASTNAD-------DYTKLVYISREGTVAAIASSKVPA  157 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEEC-------SSCCCCTT-------CCEEEEEECTTSSCEEEEESCSSC
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeec-------eeecCCcc-------cCEEEEEEcCCCCEEEEEECCCCC
Confidence            421        22344443322110000000000       00000000       0012345699999442 4566899


Q ss_pred             eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578          230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP  309 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  309 (440)
                      +|++||+++++++..+. |...|.+++|+|+|++|++++. +.+++|+...+.      ........+|...|.+++|+|
T Consensus       158 ~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~------~~~~~~~~~~~~~v~~v~fsp  229 (365)
T 4h5i_A          158 IMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGS------CIARKTDFDKNWSLSKINFIA  229 (365)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCC------EEEEECCCCTTEEEEEEEEEE
T ss_pred             EEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCc------ceeeeecCCCCCCEEEEEEcC
Confidence            99999999999988886 5678999999999999999985 456777654433      012234557889999999999


Q ss_pred             CCCEEEEEeCCC----cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578          310 NSEQIITASKDG----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE  384 (440)
Q Consensus       310 ~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~  384 (440)
                      ++.++++++.|+    .+++|++......          ........++...|++++|+|||++||+|+ |+.|+|||+.
T Consensus       230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~  299 (365)
T 4h5i_A          230 DDTVLIAASLKKGKGIVLTKISIKSGNTS----------VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLK  299 (365)
T ss_dssp             TTEEEEEEEESSSCCEEEEEEEEETTEEE----------EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             CCCEEEEEecCCcceeEEeecccccceec----------ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECC
Confidence            999999999887    5888888644221          001122235566799999999999999876 8999999999


Q ss_pred             CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       385 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +++++..+..+|...|++++|+||+        ++|+|||.|++||||+++..
T Consensus       300 ~~~~~~~~~~gH~~~V~~v~fSpdg--------~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          300 DLSMSKIFKQAHSFAITEVTISPDS--------TYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TTEEEEEETTSSSSCEEEEEECTTS--------CEEEEEETTSEEEEEECCTT
T ss_pred             CCcEEEEecCcccCCEEEEEECCCC--------CEEEEEeCCCeEEEEEcCCC
Confidence            9999988667999999999999999        89999999999999999754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.8e-39  Score=289.78  Aligned_cols=305  Identities=13%  Similarity=0.121  Sum_probs=228.2

Q ss_pred             ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      +..|.++|++++|+|++++|++|+.||.|++||+.++..   ........|...|.+++|+|+++++++++.+   ..+.
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~i~   77 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---VQVHELKEHNGQVTGVDWAPDSNRIVTCGTD---RNAY   77 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---EEEEEEECCSSCEEEEEEETTTTEEEEEETT---SCEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---EeeeeecCCCCcccEEEEeCCCCEEEEEcCC---CeEE
Confidence            456999999999999999999999999999999987631   1334445788999999999999999999877   4566


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce---ee
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL---LG  243 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~  243 (440)
                      +|+..........              ....+..       ....+.++++++ ++++++.|+.|++||+..++.   ..
T Consensus        78 vwd~~~~~~~~~~--------------~~~~~~~-------~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~  135 (372)
T 1k8k_C           78 VWTLKGRTWKPTL--------------VILRINR-------AARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCK  135 (372)
T ss_dssp             EEEEETTEEEEEE--------------ECCCCSS-------CEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred             EEECCCCeeeeeE--------------EeecCCC-------ceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeee
Confidence            6665432100000              0000111       122334477887 899999999999999988763   23


Q ss_pred             e-eeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCc----------eeeeeeeeeeeccccceEEEEEcCCCC
Q 013578          244 N-VDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGL----------VKAVTSVMQLKGHKSAVTWLCFAPNSE  312 (440)
Q Consensus       244 ~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~h~~~v~~~~~~p~~~  312 (440)
                      . ...|...+.+++|+|++++|++++.||.|++||++......          ......+..+.+|...|.+++|+|++.
T Consensus       136 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (372)
T 1k8k_C          136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS  215 (372)
T ss_dssp             EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred             eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence            3 35678899999999999999999999999999975221000          001125667778999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCC--cc---
Q 013578          313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVET--GK---  387 (440)
Q Consensus       313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~--~~---  387 (440)
                      +|++++.|+.|++||++++..+.              ....+...+.+++|+|++++|++|.|+.|++|++.+  ++   
T Consensus       216 ~l~~~~~d~~i~i~d~~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~  281 (372)
T 1k8k_C          216 RVAWVSHDSTVCLADADKKMAVA--------------TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSF  281 (372)
T ss_dssp             EEEEEETTTEEEEEEGGGTTEEE--------------EEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCceeE--------------EEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEE
Confidence            99999999999999998664321              112345568899999999999999999999999988  42   


Q ss_pred             -----------------------------ch------hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578          388 -----------------------------VL------DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW  432 (440)
Q Consensus       388 -----------------------------~~------~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw  432 (440)
                                                   ..      ..+..+|.+.|++++|.+..    +.+..+|+||+.||.|++|
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----g~~~~~l~s~~~Dg~i~~W  357 (372)
T 1k8k_C          282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG----KAKCSQFCTTGMDGGMSIW  357 (372)
T ss_dssp             CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEEST----TTSCSEEEEEETTSEEEEE
T ss_pred             eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCC----CcceeeEEEecCCCceEEE
Confidence                                         00      23324899999999987542    0111599999999999999


Q ss_pred             eCCCC
Q 013578          433 LAPSL  437 (440)
Q Consensus       433 ~~~~~  437 (440)
                      ++.++
T Consensus       358 ~~~~~  362 (372)
T 1k8k_C          358 DVRSL  362 (372)
T ss_dssp             EHHHH
T ss_pred             EecCh
Confidence            98654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=277.65  Aligned_cols=265  Identities=18%  Similarity=0.250  Sum_probs=215.5

Q ss_pred             CCCCCCCCCCCcccCccc------cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC
Q 013578           66 HSHSHGDKDQNKRHHPLD------VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG  139 (440)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~------~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~  139 (440)
                      ....+++.|+.+++|...      ...+.+|...|.+++|++++.++++|+.|++|++||+.++.     .......+..
T Consensus        49 ~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~-----~~~~~~~~~~  123 (321)
T 3ow8_A           49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-----QIKSIDAGPV  123 (321)
T ss_dssp             CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCTT
T ss_pred             CEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----EEEEEeCCCc
Confidence            346788889999998642      34689999999999999999999999999999999998764     2333445667


Q ss_pred             CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578          140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS  219 (440)
Q Consensus       140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (440)
                      .+.+++|+|+++++++++.+   ..+.+|+.........             .   ..+..       ....+.++|+++
T Consensus       124 ~~~~~~~spdg~~l~~g~~d---g~v~i~~~~~~~~~~~-------------~---~~~~~-------~v~~~~~spdg~  177 (321)
T 3ow8_A          124 DAWTLAFSPDSQYLATGTHV---GKVNIFGVESGKKEYS-------------L---DTRGK-------FILSIAYSPDGK  177 (321)
T ss_dssp             CCCCEEECTTSSEEEEECTT---SEEEEEETTTCSEEEE-------------E---ECSSS-------CEEEEEECTTSS
T ss_pred             cEEEEEECCCCCEEEEEcCC---CcEEEEEcCCCceeEE-------------e---cCCCc-------eEEEEEECCCCC
Confidence            89999999999999999876   4666776544311100             0   00111       112344588888


Q ss_pred             eEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578          220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK  299 (440)
Q Consensus       220 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  299 (440)
                       +|++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++|+.|+.|++||++...        ....+.+|.
T Consensus       178 -~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~h~  248 (321)
T 3ow8_A          178 -YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN--------LAGTLSGHA  248 (321)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC--------EEEEECCCS
T ss_pred             -EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc--------eeEEEcCCC
Confidence             99999999999999999999999999999999999999999999999999999999986554        567788999


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578          300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL  378 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i  378 (440)
                      ..|.+++|+|++.+|++++.|++|++||++++.++.              ...+|...|.+++|+|++++|++++ |+.|
T Consensus       249 ~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~--------------~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i  314 (321)
T 3ow8_A          249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH--------------TFFDHQDQVWGVKYNGNGSKIVSVGDDQEI  314 (321)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--------------EECCCSSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE--------------EEcCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence            999999999999999999999999999998765432              1234566799999999999888865 8999


Q ss_pred             EEEEcC
Q 013578          379 QWLSVE  384 (440)
Q Consensus       379 ~i~d~~  384 (440)
                      ++||..
T Consensus       315 ~vwd~p  320 (321)
T 3ow8_A          315 HIYDCP  320 (321)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            999963

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=8.1e-39  Score=286.10  Aligned_cols=314  Identities=13%  Similarity=0.113  Sum_probs=226.9

Q ss_pred             ccccccCcceeEEEEccC----CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC----CCeEEEE
Q 013578           85 NTLKGHGDSVTGLCFSSD----GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN----ATSIVVA  156 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~d----g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~----~~~l~~~  156 (440)
                      ....+|.+.|++++|+|+    ...+++++.++.|++|++.++.............+...|.+++|+|+    +.+++++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            345689999999999984    45666667777999999986543322112222346788999999999    5678888


Q ss_pred             eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC-CCCeEEEEeeCCceEEEEe
Q 013578          157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA-DGSTIIASCSEGTDISIWH  235 (440)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~vwd  235 (440)
                      +.+   ..+.+|+........                ....+...       ...+.++| ++. ++++++.|+.|++||
T Consensus        92 ~~d---g~i~v~d~~~~~~~~----------------~~~~~~~~-------i~~~~~~~~~~~-~l~s~~~dg~i~iwd  144 (366)
T 3k26_A           92 GSR---GIIRIINPITMQCIK----------------HYVGHGNA-------INELKFHPRDPN-LLLSVSKDHALRLWN  144 (366)
T ss_dssp             ETT---CEEEEECTTTCCEEE----------------EEESCCSC-------EEEEEECSSCTT-EEEEEETTSCEEEEE
T ss_pred             cCC---CEEEEEEchhceEee----------------eecCCCCc-------EEEEEECCCCCC-EEEEEeCCCeEEEEE
Confidence            876   577788765431110                00111111       22334467 555 999999999999999


Q ss_pred             CCCCceeeee---eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce--------------------eeeeee
Q 013578          236 GKTGKLLGNV---DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV--------------------KAVTSV  292 (440)
Q Consensus       236 ~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------------~~~~~~  292 (440)
                      +.+++.+..+   ..|...+.+++|+|++++|++++.||.|++||++.......                    ......
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (366)
T 3k26_A          145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF  224 (366)
T ss_dssp             TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred             eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence            9999988887   67899999999999999999999999999999875431000                    000112


Q ss_pred             eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC--CCEE
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD--GKIL  370 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l  370 (440)
                      ....+|...|.+++|+  +++|++++.|+.|++||+++.......................+...|.+++|+|+  +++|
T Consensus       225 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l  302 (366)
T 3k26_A          225 STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML  302 (366)
T ss_dssp             EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred             ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence            2334599999999998  77999999999999999987644211111110000112223345566889999999  9999


Q ss_pred             EEec-CCEEEEEEcCCccchh----hhhccc--cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          371 AATH-GSTLQWLSVETGKVLD----TAEKAH--EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       371 ~~~~-~~~i~i~d~~~~~~~~----~~~~~h--~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ++++ |+.|++||+.+++...    .+ .+|  ...|++++|+|++        .+|++++.||.|++||+.+
T Consensus       303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~--------~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEVEDPHKAKCTTL-THHKCGAAIRQTSFSRDS--------SILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEECTTSCEEEEECCSSSGGGCEEEEE-CCTTCCSCEEEEEECTTS--------SEEEEEETTSEEEEEEC--
T ss_pred             EEEecCCcEEEEECCCCCCccccceEE-cccccCCceEEEEeCCCC--------CeEEEEeCCCEEEEEEecC
Confidence            9876 8999999999987654    44 356  7899999999998        8999999999999999863

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.9e-38  Score=283.29  Aligned_cols=315  Identities=17%  Similarity=0.253  Sum_probs=229.6

Q ss_pred             ccccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEE--------ecCCCCCCCceEEEcc-CCCe
Q 013578           83 DVNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLR--------INLPPGGPPTAVAFAD-NATS  152 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~--------~~~~~~~~v~~v~~~~-~~~~  152 (440)
                      ....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+..........        ....|...|.+++|+| ++..
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            3556789999999999999 9999999999999999999877544221111        0124788999999999 6778


Q ss_pred             EEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEE
Q 013578          153 IVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDIS  232 (440)
Q Consensus       153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  232 (440)
                      +++++.+   ..+.+|+...........                 .........+    ....+++. ++++++.|+.|+
T Consensus       115 l~s~~~d---~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~v~  169 (408)
T 4a11_B          115 FTSSSFD---KTLKVWDTNTLQTADVFN-----------------FEETVYSHHM----SPVSTKHC-LVAVGTRGPKVQ  169 (408)
T ss_dssp             EEEEETT---SEEEEEETTTTEEEEEEE-----------------CSSCEEEEEE----CSSCSSCC-EEEEEESSSSEE
T ss_pred             EEEEeCC---CeEEEeeCCCCccceecc-----------------CCCceeeeEe----ecCCCCCc-EEEEEcCCCeEE
Confidence            8888766   567777665432111100                 0000001000    11123444 899999999999


Q ss_pred             EEeCCCCceeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCce--------eeeeeeeeeeccccceE
Q 013578          233 IWHGKTGKLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLV--------KAVTSVMQLKGHKSAVT  303 (440)
Q Consensus       233 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~~~~~h~~~v~  303 (440)
                      +||+.+++.+..+..|...+.+++|+|+++ +|++++.||.|++||++.......        ..........+|...|.
T Consensus       170 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  249 (408)
T 4a11_B          170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN  249 (408)
T ss_dssp             EEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred             EEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence            999999999999999999999999999998 588999999999999976541100        00011222367899999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEc
Q 013578          304 WLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSV  383 (440)
Q Consensus       304 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~  383 (440)
                      +++|+|++++|++++.||.|++||++++...........        ................+.+++++.++.|++||+
T Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~  321 (408)
T 4a11_B          250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC--------NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV  321 (408)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC--------CCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc--------ccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence            999999999999999999999999997654322111100        000011112233445566777788999999999


Q ss_pred             CCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       384 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      .+++.+..+ .+|.+.|++++|+|++        .+|++++.||.|++|++.+++.
T Consensus       322 ~~~~~~~~~-~~~~~~v~~~~~s~~~--------~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          322 YSGEQITML-KGHYKTVDCCVFQSNF--------QELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             TTCCEEEEE-CCCSSCEEEEEEETTT--------TEEEEEETTSCEEEEEECC---
T ss_pred             cCCcceeee-ccCCCeEEEEEEcCCC--------CEEEEECCCCeEEEEeCCCCCc
Confidence            999999988 5899999999999998        8999999999999999988753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-38  Score=288.89  Aligned_cols=319  Identities=12%  Similarity=0.158  Sum_probs=241.8

Q ss_pred             CCCCCcccCcccc------ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578           72 DKDQNKRHHPLDV------NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA  145 (440)
Q Consensus        72 ~~~~~~~~~~~~~------~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~  145 (440)
                      ..++.+++|....      .....|...|++++|+|++++|++|+.||.|++|++...... .........|...|.+++
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~-~~~~~~~~~h~~~v~~~~  120 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA-INSMARFSNHSSSVKTVK  120 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC-CCEEEECCCSSSCCCEEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc-ccchhhccCCccceEEEE
Confidence            5677777775431      222368999999999999999999999999999999873211 124455667889999999


Q ss_pred             EccC-CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578          146 FADN-ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS  224 (440)
Q Consensus       146 ~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  224 (440)
                      |+|+ +.++++++.+   ..+.+|+............       .........+..       ....+.+++++..++++
T Consensus       121 ~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~~  183 (416)
T 2pm9_A          121 FNAKQDNVLASGGNN---GEIFIWDMNKCTESPSNYT-------PLTPGQSMSSVD-------EVISLAWNQSLAHVFAS  183 (416)
T ss_dssp             ECSSSTTBEEEECSS---SCEEBCBTTTTSSCTTTCC-------CBCCCCSCCSSC-------CCCEEEECSSCTTEEEE
T ss_pred             EcCCCCCEEEEEcCC---CeEEEEECCCCcccccccc-------ccccccccCCCC-------CeeEEEeCCCCCcEEEE
Confidence            9998 8888888876   5688887765421000000       000000011111       12234457775559999


Q ss_pred             eeCCceEEEEeCCCCceeeeeeCC------CCcccEEEecCCC-CeEEEEecCC---CEEEEEeEecCCCceeeeeeeee
Q 013578          225 CSEGTDISIWHGKTGKLLGNVDTN------QLKNNMAAISPNG-RFLAAAAFTA---DVKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       225 ~~~d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      ++.|+.|++||+++++.+..+..+      ...+.+++|+|++ .+|++++.|+   .|++||++...       .....
T Consensus       184 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-------~~~~~  256 (416)
T 2pm9_A          184 AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-------TPLQT  256 (416)
T ss_dssp             ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-------SCSBC
T ss_pred             EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-------CCcEE
Confidence            999999999999999998888776      7889999999997 6899999998   99999997653       14556


Q ss_pred             ee-ccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEE
Q 013578          295 LK-GHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILA  371 (440)
Q Consensus       295 ~~-~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~  371 (440)
                      +. +|...|.+++|+| ++.+|++++.|+.|++||++++..+.              ...+|...|.+++|+|++ .+|+
T Consensus       257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~--------------~~~~~~~~v~~~~~s~~~~~~l~  322 (416)
T 2pm9_A          257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS--------------QFPARGNWCFKTKFAPEAPDLFA  322 (416)
T ss_dssp             CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE--------------EEECSSSCCCCEEECTTCTTEEE
T ss_pred             eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce--------------eecCCCCceEEEEECCCCCCEEE
Confidence            77 8999999999999 99999999999999999998754321              112455668899999999 7888


Q ss_pred             Eec-CCEEEEEEcCCccchhhhh----------------------------------ccccCCeEEEEecCCCCCCCCCc
Q 013578          372 ATH-GSTLQWLSVETGKVLDTAE----------------------------------KAHEGEITCMAWAPKTIPMGNQQ  416 (440)
Q Consensus       372 ~~~-~~~i~i~d~~~~~~~~~~~----------------------------------~~h~~~v~~v~~~~~~~~~~~~~  416 (440)
                      +++ |+.|++||+.+++......                                  ..|...+.+++|+|++       
T Consensus       323 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-------  395 (416)
T 2pm9_A          323 CASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG-------  395 (416)
T ss_dssp             ECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT-------
T ss_pred             EEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCC-------
Confidence            865 8999999998876443221                                  1166788899999999       


Q ss_pred             ceEEEEeeCCCeEEEEeCCCC
Q 013578          417 VSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       417 ~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                       ++|++++.||.|+||++.+.
T Consensus       396 -~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          396 -KLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             -EEECBCTTSSCBCCBCCCCC
T ss_pred             -eEEEEeCCCCeEEEEEeccC
Confidence             99999999999999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-38  Score=273.74  Aligned_cols=288  Identities=17%  Similarity=0.216  Sum_probs=226.2

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ..++++.+|.+.|++++| |++++|++|+.||.|++||+.+..     .......|...|.+++|+|+++.+++++.++ 
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-   81 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----LGTVVYTGQGFLNSVCYDSEKELLLFGGKDT-   81 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----EEEEEEECSSCEEEEEEETTTTEEEEEETTS-
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----EEEEeecCCccEEEEEECCCCCEEEEecCCC-
Confidence            457789999999999999 999999999999999999997653     3344446678999999999999999999884 


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                        .+.+|+........          ....+   ..+...+...       .+  +++ ++++++.|+.|++||  .++.
T Consensus        82 --~i~~~~~~~~~~~~----------~~~~~---~~~~~~i~~~-------~~--~~~-~l~~~~~d~~i~~~d--~~~~  134 (313)
T 3odt_A           82 --MINGVPLFATSGED----------PLYTL---IGHQGNVCSL-------SF--QDG-VVISGSWDKTAKVWK--EGSL  134 (313)
T ss_dssp             --CEEEEETTCCTTSC----------C-CEE---CCCSSCEEEE-------EE--ETT-EEEEEETTSEEEEEE--TTEE
T ss_pred             --eEEEEEeeecCCCC----------cccch---hhcccCEEEE-------Ee--cCC-EEEEEeCCCCEEEEc--CCcE
Confidence              44444433221000          00000   1111111111       11  344 899999999999999  6778


Q ss_pred             eeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec-cccceEEEEEcCCCCEEEEEeC
Q 013578          242 LGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      +..+..|...+.++.+.| ++++|++++.||.|++||...          ....+.. |...|.+++|+|++. |++++.
T Consensus       135 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~  203 (313)
T 3odt_A          135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK----------VIKTFSGIHNDVVRHLAVVDDGH-FISCSN  203 (313)
T ss_dssp             EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE----------EEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred             EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc----------eEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence            888889999999999988 999999999999999999321          3445555 889999999999998 999999


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCC
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGE  399 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~  399 (440)
                      ||.|++||++++..+.              ...+|...|.+++|+|++.+++++.|+.|++||+.+++.+..+ ..|...
T Consensus       204 dg~i~i~d~~~~~~~~--------------~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~  268 (313)
T 3odt_A          204 DGLIKLVDMHTGDVLR--------------TYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVI-TLPAIS  268 (313)
T ss_dssp             TSEEEEEETTTCCEEE--------------EEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEE-ECSSSC
T ss_pred             CCeEEEEECCchhhhh--------------hhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEE-eccCce
Confidence            9999999998654321              1124556799999999997666677999999999999998888 589999


Q ss_pred             eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          400 ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       400 v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      |.+++|+|++        . +++++.||.|++|++.+++
T Consensus       269 i~~~~~~~~~--------~-~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          269 IWSVDCMSNG--------D-IIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             EEEEEECTTS--------C-EEEEETTSCEEEEESCGGG
T ss_pred             EEEEEEccCC--------C-EEEEeCCCcEEEEeCCCCc
Confidence            9999999997        5 7789999999999998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-39  Score=290.32  Aligned_cols=306  Identities=15%  Similarity=0.113  Sum_probs=217.7

Q ss_pred             ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      ++.|.++|++++|+|+|++|++|+.||.|+||++.++..   ........|...|.+++|+|++++|++++.+   ..+.
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---~~v~   80 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---KHARTFSDHDKIVTCVDWAPKSNRIVTCSQD---RNAY   80 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---EECCCBCCCSSCEEEEEECTTTCCEEEEETT---SSEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---EEEEEEecCCceEEEEEEeCCCCEEEEEeCC---CeEE
Confidence            455778999999999999999999999999999986521   2334556788999999999999999999977   4677


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc---eee
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK---LLG  243 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~  243 (440)
                      +|+........          ....   ...+...       ...+.++|+++ +|++++.|+.|++||+++++   ...
T Consensus        81 vwd~~~~~~~~----------~~~~---~~~~~~~-------v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~  139 (377)
T 3dwl_C           81 VYEKRPDGTWK----------QTLV---LLRLNRA-------ATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSK  139 (377)
T ss_dssp             EC------CCC----------CEEE---CCCCSSC-------EEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCE
T ss_pred             EEEcCCCCcee----------eeeE---ecccCCc-------eEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeee
Confidence            77765532000          0000   0111111       22334577877 89999999999999999887   366


Q ss_pred             eeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCc----------eeeeeeeeeeeccccceEEEEEcCCCC
Q 013578          244 NVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGL----------VKAVTSVMQLKGHKSAVTWLCFAPNSE  312 (440)
Q Consensus       244 ~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~h~~~v~~~~~~p~~~  312 (440)
                      .+.. |...+.+++|+|++++|++++.|+.|++||+.......          ......+..+ +|...|.+++|+|+++
T Consensus       140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~  218 (377)
T 3dwl_C          140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN  218 (377)
T ss_dssp             EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred             EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence            7776 89999999999999999999999999999985322100          0112345555 8999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCcc--ch-
Q 013578          313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGK--VL-  389 (440)
Q Consensus       313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~--~~-  389 (440)
                      +|++++.|+.|++||++++.....          ......+|...|.+++|+|++++|++++++.+.+|+.....  .. 
T Consensus       219 ~l~~~~~d~~i~iwd~~~~~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~  288 (377)
T 3dwl_C          219 ALAYAGHDSSVTIAYPSAPEQPPR----------ALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTR  288 (377)
T ss_dssp             CEEEEETTTEEC-CEECSTTSCEE----------ECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSB
T ss_pred             EEEEEeCCCcEEEEECCCCCCcce----------eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEe
Confidence            999999999999999987643100          01222345667899999999999999987777788765221  00 


Q ss_pred             ------------------------------------------------hhhhccccCCeEEEEecCCCCCCCCCcceEEE
Q 013578          390 ------------------------------------------------DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA  421 (440)
Q Consensus       390 ------------------------------------------------~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~  421 (440)
                                                                      ..+...|.+.|+++++.+...    .+...|+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~----~~~~~~~  364 (377)
T 3dwl_C          289 DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP----GNITAFT  364 (377)
T ss_dssp             CCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET----TEEEEEE
T ss_pred             eecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC----CceEEEE
Confidence                                                            001123999999999876531    1113799


Q ss_pred             EeeCCCeEEEEeC
Q 013578          422 TSSVDKKVKLWLA  434 (440)
Q Consensus       422 t~~~Dg~i~vw~~  434 (440)
                      |||.||.|++||+
T Consensus       365 s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          365 SSGTDGRVVLWTL  377 (377)
T ss_dssp             EEETTSEEEEECC
T ss_pred             eecCCCcEEEecC
Confidence            9999999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-38  Score=287.98  Aligned_cols=318  Identities=14%  Similarity=0.164  Sum_probs=240.3

Q ss_pred             CCCCCCCCCCcccCcc--------------ccccccc----------cCcceeEEEEccCCCEEEEeeCCCcEEEEecCC
Q 013578           67 SHSHGDKDQNKRHHPL--------------DVNTLKG----------HGDSVTGLCFSSDGKCLATACADGVIRVHKLDD  122 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~--------------~~~~l~~----------H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~  122 (440)
                      ..+++..++..++|..              ....+..          |.+.|++++|+|++++|++|+.||.|++|+.. 
T Consensus        60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-  138 (425)
T 1r5m_A           60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-  138 (425)
T ss_dssp             EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETT-
T ss_pred             EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-
Confidence            4456667777777766              2222333          78899999999999999999999999999933 


Q ss_pred             CCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeeccccccccee
Q 013578          123 ASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRA  202 (440)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (440)
                      +.     .......|...|.+++|+|+++++++++.+   ..+.+|+.................. ..  .     ....
T Consensus       139 ~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~-~~--~-----~~~~  202 (425)
T 1r5m_A          139 GA-----LLNVLNFHRAPIVSVKWNKDGTHIISMDVE---NVTILWNVISGTVMQHFELKETGGS-SI--N-----AENH  202 (425)
T ss_dssp             SC-----EEEEECCCCSCEEEEEECTTSSEEEEEETT---CCEEEEETTTTEEEEEECCC--------------------
T ss_pred             CC-----eeeeccCCCccEEEEEECCCCCEEEEEecC---CeEEEEECCCCcEEEEeeccccCcc-ce--e-----eccc
Confidence            22     344556788999999999999999999876   4566776544321111110000000 00  0     0000


Q ss_pred             EEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecC
Q 013578          203 ILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK  282 (440)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  282 (440)
                      .........+.+++++  .+++++.++.|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||++...
T Consensus       203 ~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  280 (425)
T 1r5m_A          203 SGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN  280 (425)
T ss_dssp             ---CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS
T ss_pred             cCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence            0000002233334443  68899999999999999999998998999999999999999999999999999999987665


Q ss_pred             CCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          283 DGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       283 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                              ....+.+|...|.+++|+|++ +|++++.|+.|++||++++..+.              ....+...+.+++
T Consensus       281 --------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~--------------~~~~~~~~i~~~~  337 (425)
T 1r5m_A          281 --------SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA--------------LSIVDGVPIFAGR  337 (425)
T ss_dssp             --------CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE--------------EEECTTCCEEEEE
T ss_pred             --------cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE--------------ecccCCccEEEEE
Confidence                    566778899999999999999 99999999999999998654321              1113445688999


Q ss_pred             eCCCCCEEEEec-CCEEEEEEcCCcc--------------------chhhhhccccC--CeEEEEecCCCCCCCCCcceE
Q 013578          363 LSSDGKILAATH-GSTLQWLSVETGK--------------------VLDTAEKAHEG--EITCMAWAPKTIPMGNQQVSV  419 (440)
Q Consensus       363 ~s~~g~~l~~~~-~~~i~i~d~~~~~--------------------~~~~~~~~h~~--~v~~v~~~~~~~~~~~~~~~~  419 (440)
                      |+|++++|++++ ++.|++||+.+++                    .+..+ .+|..  .|++++|+|++        ++
T Consensus       338 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~--------~~  408 (425)
T 1r5m_A          338 ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSSQDNDYIFDLSWNCAG--------NK  408 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE-CCTTCCCCEEEEEECTTS--------SE
T ss_pred             EcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh-cCcccCCceEEEEccCCC--------ce
Confidence            999999999876 8999999999888                    67777 47766  99999999998        89


Q ss_pred             EEEeeCCCeEEEEeCC
Q 013578          420 LATSSVDKKVKLWLAP  435 (440)
Q Consensus       420 l~t~~~Dg~i~vw~~~  435 (440)
                      |++++.||.|++|+++
T Consensus       409 l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          409 ISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEESSSCCEEEECC
T ss_pred             EEEEecCceEEEEeec
Confidence            9999999999999986

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.6e-38  Score=278.47  Aligned_cols=304  Identities=15%  Similarity=0.203  Sum_probs=224.3

Q ss_pred             cccccccCcceeEEEEccCCCEE-EEeeC---CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC---CCeEEEE
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCL-ATACA---DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN---ATSIVVA  156 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l-~t~s~---dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~  156 (440)
                      .+.+.+|.+.|++++|+|++..+ ++|+.   ||.|++|++.++....    ....+|...|.+++|+|+   +.+++++
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~l~~~   86 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL----LREIEKAKPIKCGTFGATSLQQRYLATG   86 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE----EEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc----eeeecccCcEEEEEEcCCCCCCceEEEe
Confidence            45668899999999999999655 56665   9999999998765321    222356789999999999   6899998


Q ss_pred             eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578          157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG  236 (440)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~  236 (440)
                      +.+   ..+.+|+......            ....+   ..+... +..........++++++ ++++++.|+.|++||+
T Consensus        87 ~~d---g~i~iwd~~~~~~------------~~~~~---~~~~~~-v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~  146 (357)
T 3i2n_A           87 DFG---GNLHIWNLEAPEM------------PVYSV---KGHKEI-INAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDP  146 (357)
T ss_dssp             ETT---SCEEEECTTSCSS------------CSEEE---CCCSSC-EEEEEEESGGGCC-CCC-EEEEEETTSCEEEECT
T ss_pred             cCC---CeEEEEeCCCCCc------------cEEEE---Eecccc-eEEEeeccccccCCCcc-EEEEEeCCCeEEEEeC
Confidence            877   5677777654320            00111   112111 11122222234577887 8999999999999999


Q ss_pred             CCCc-eeeeeeCCCC----cccEEE----ecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578          237 KTGK-LLGNVDTNQL----KNNMAA----ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF  307 (440)
Q Consensus       237 ~~~~-~~~~~~~~~~----~v~~~~----~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (440)
                      .+++ .+..+..+..    .+.+++    |+|++++|++++.||.|++||++...         ......|...|.+++|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~v~~~~~  217 (357)
T 3i2n_A          147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA---------LRWETNIKNGVCSLEF  217 (357)
T ss_dssp             TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE---------EEEEEECSSCEEEEEE
T ss_pred             CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc---------eeeecCCCCceEEEEc
Confidence            9887 6677765444    677887    78999999999999999999986553         2334668899999999


Q ss_pred             cC---CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec-CCEEEEEE
Q 013578          308 AP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH-GSTLQWLS  382 (440)
Q Consensus       308 ~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~i~i~d  382 (440)
                      +|   ++.+|++++.||.|++||+++......       +  ......++...|.+++|+|+++ +|++++ |+.|++||
T Consensus       218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  288 (357)
T 3i2n_A          218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKG-------F--ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK  288 (357)
T ss_dssp             SCSSSSCCEEEEEESTTEEEEEEEEEEETTTE-------E--EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred             CCCCCCCCEEEEECCCCeEEEEeCcCCCcccc-------e--eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence            99   999999999999999999987543211       0  0111224566799999999998 677765 89999999


Q ss_pred             cCCcc-------------------chhhhhccccCCeEEEEecCCCCCCCCCcceEEE-EeeCCCeEEEEeCCCCC
Q 013578          383 VETGK-------------------VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA-TSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       383 ~~~~~-------------------~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~~Dg~i~vw~~~~~~  438 (440)
                      +.++.                   .+..+ .+|.+.|++++|+|++        .+|+ +++.||.|++|++.+.+
T Consensus       289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~--------~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TLSTQPISSLDWSPDK--------RGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EECCSCC--CCTTSCCCCCCCEEEEEEEE-ECCSSCEEEEEECSSS--------TTEEEEEETTSEEEEEEECC--
T ss_pred             cCCCcccccccCCCCccccccccceeecc-ccCCCCeeEEEEcCCC--------CeEEEEecCCCcEEEEECCCcc
Confidence            98653                   33444 5799999999999998        7787 89999999999998765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-37  Score=279.37  Aligned_cols=259  Identities=22%  Similarity=0.314  Sum_probs=211.6

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      .+..+.+|.+.|++++|+|++++|++|+.||.|+||++.....   ........|...|.+++|+++.            
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~------------   67 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHPK------------   67 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECCGG------------
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---eeeeEecCCCCcEEEEEeCCCC------------
Confidence            4577899999999999999999999999999999999975432   2445566788899999998651            


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--  240 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--  240 (440)
                                                                            ++. +|++++.|+.|++||+.+++  
T Consensus        68 ------------------------------------------------------~~~-~l~s~~~dg~v~iwd~~~~~~~   92 (379)
T 3jrp_A           68 ------------------------------------------------------FGT-ILASCSYDGKVLIWKEENGRWS   92 (379)
T ss_dssp             ------------------------------------------------------GCS-EEEEEETTSCEEEEEEETTEEE
T ss_pred             ------------------------------------------------------CCC-EEEEeccCCEEEEEEcCCCcee
Confidence                                                                  111 78899999999999999887  


Q ss_pred             eeeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC---------
Q 013578          241 LLGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP---------  309 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p---------  309 (440)
                      .+..+..|...+.+++|+|+  +++|++++.||.|++||++....      .....+.+|...|.+++|+|         
T Consensus        93 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  166 (379)
T 3jrp_A           93 QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------TSPIIIDAHAIGVNSASWAPATIEEDGEH  166 (379)
T ss_dssp             EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC------CCEEEEECCTTCEEEEEECCCC-------
T ss_pred             EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc------eeeEEecCCCCceEEEEEcCccccccccc
Confidence            67777888999999999999  99999999999999999976531      13345678999999999999         


Q ss_pred             ----CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC---CCEEEEec-CCEEEEE
Q 013578          310 ----NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD---GKILAATH-GSTLQWL  381 (440)
Q Consensus       310 ----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~-~~~i~i~  381 (440)
                          ++.+|++++.|+.|++||+++.....          .......+|...|.+++|+|+   +.+|++++ |+.|++|
T Consensus       167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw  236 (379)
T 3jrp_A          167 NGTKESRKFVTGGADNLVKIWKYNSDAQTY----------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW  236 (379)
T ss_dssp             ---CTTCEEEEEETTSCEEEEEEETTTTEE----------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             cCCCCCCEEEEEeCCCeEEEEEecCCCcce----------eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence                69999999999999999998543210          011223356677999999999   88888866 8999999


Q ss_pred             EcCCcc-----chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          382 SVETGK-----VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       382 d~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      |+.+++     .+... ..|...|++++|+|++        .+|++++.||.|++|++..
T Consensus       237 d~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g--------~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          237 TQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSG--------NVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EESSTTSCCEEEESSS-SCCSSCEEEEEECSSS--------CCEEEEESSSSEEEEEEEE
T ss_pred             eCCCCCccceeeeecc-ccCCCcEEEEEEcCCC--------CEEEEecCCCcEEEEeCCC
Confidence            999874     22222 3588899999999998        8999999999999999873

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3e-37  Score=273.98  Aligned_cols=264  Identities=18%  Similarity=0.263  Sum_probs=211.4

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC--CCeEEEEeecCC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN--ATSIVVATHNLS  161 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~~~~  161 (440)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++||+.++... .........|...|.+++|+|.  +.          
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~d~~----------   72 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN-WELSDSWRAHDSSIVAIDWASPEYGR----------   72 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC-EEEEEEEECCSSCEEEEEECCGGGCS----------
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc-ceecceeccCCCcEEEEEEcCCCCCC----------
Confidence            4567899999999999999999999999999999999875432 2334455578889999999873  33          


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC--
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG--  239 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--  239 (440)
                                                                                 +|++++.|+.|++||+.++  
T Consensus        73 -----------------------------------------------------------~l~s~~~dg~v~vwd~~~~~~   93 (351)
T 3f3f_A           73 -----------------------------------------------------------IIASASYDKTVKLWEEDPDQE   93 (351)
T ss_dssp             -----------------------------------------------------------EEEEEETTSCEEEEEECTTSC
T ss_pred             -----------------------------------------------------------EEEEEcCCCeEEEEecCCCcc
Confidence                                                                       7888899999999999877  


Q ss_pred             -------ceeeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeee-e----eeeeeccccceEEE
Q 013578          240 -------KLLGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVT-S----VMQLKGHKSAVTWL  305 (440)
Q Consensus       240 -------~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~----~~~~~~h~~~v~~~  305 (440)
                             +.+..+..|...+.+++|+|+  +++|++++.||.|++||++........... .    .....+|...+.++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (351)
T 3f3f_A           94 ECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCL  173 (351)
T ss_dssp             TTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEE
T ss_pred             cccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEE
Confidence                   557778889999999999999  999999999999999999766532211110 0    01122678899999


Q ss_pred             EEcCC---CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC----CEEEEec-CCE
Q 013578          306 CFAPN---SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG----KILAATH-GST  377 (440)
Q Consensus       306 ~~~p~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~-~~~  377 (440)
                      +|+|+   +.+|++++.|+.+.+|+.......            ......+|...|.+++|+|++    ++|++++ |+.
T Consensus       174 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          174 SWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH------------VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             EECCCSSSCCEEEEEETTEEEEEEECTTSCEE------------EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             EeccCCCCCcEEEEecCCCcEEEEccCCCcee------------eeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence            99997   899999999999988877643210            122334567789999999998    7888765 899


Q ss_pred             EEEEEcCCc----------------------------------------------cchhhhhccccCCeEEEEecCCCCC
Q 013578          378 LQWLSVETG----------------------------------------------KVLDTAEKAHEGEITCMAWAPKTIP  411 (440)
Q Consensus       378 i~i~d~~~~----------------------------------------------~~~~~~~~~h~~~v~~v~~~~~~~~  411 (440)
                      |++||+.++                                              +.+..+ .+|.+.|++++|+|++  
T Consensus       242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~--  318 (351)
T 3f3f_A          242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDHNGEVWSVSWNLTG--  318 (351)
T ss_dssp             EEEEEEEECC---------------------------------------CCSEEEEEEEEE-CTTSSCEEEEEECSSS--
T ss_pred             EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-ecccccEEEEEEcCCC--
Confidence            999999875                                              344444 5799999999999998  


Q ss_pred             CCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          412 MGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       412 ~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                            .+|++|+.||.|++|++.+++
T Consensus       319 ------~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          319 ------TILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             ------CCEEEEETTSCEEEEEECTTS
T ss_pred             ------CEEEEecCCCcEEEEecCcCc
Confidence                  899999999999999998764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.7e-38  Score=283.14  Aligned_cols=263  Identities=21%  Similarity=0.338  Sum_probs=215.3

Q ss_pred             CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578           67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT  142 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~  142 (440)
                      ...+++.|+.+++|..    ..+++.+|.+.|++++|+|+|++|++|+.||+|++||+.+..     ......+|...|.
T Consensus       122 ~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~-----~~~~~~~h~~~V~  196 (410)
T 1vyh_C          122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVS  196 (410)
T ss_dssp             EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-----EEECCCCCSSCEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeEEEcCCCCCEE
Confidence            3456677888888865    467899999999999999999999999999999999997654     4556678889999


Q ss_pred             eEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578          143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII  222 (440)
Q Consensus       143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  222 (440)
                      +++|+|++.++++++.|   ..+.+|+.........                ...|...+       ..+.+++++. ++
T Consensus       197 ~v~~~p~~~~l~s~s~D---~~i~~wd~~~~~~~~~----------------~~~h~~~v-------~~~~~~~~g~-~l  249 (410)
T 1vyh_C          197 SVSIMPNGDHIVSASRD---KTIKMWEVQTGYCVKT----------------FTGHREWV-------RMVRPNQDGT-LI  249 (410)
T ss_dssp             EEEECSSSSEEEEEETT---SEEEEEETTTCCEEEE----------------EECCSSCE-------EEEEECTTSS-EE
T ss_pred             EEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEE----------------EeCCCccE-------EEEEECCCCC-EE
Confidence            99999999999999887   5777887654321100                01111111       1223467777 99


Q ss_pred             EEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC--------------------CCeEEEEecCCCEEEEEeEecC
Q 013578          223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN--------------------GRFLAAAAFTADVKVWEIVYSK  282 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~i~d~~~~~  282 (440)
                      ++|+.|++|++||+.++++...+..|...+.+++|+|+                    +.+|++|+.|+.|++||++.+.
T Consensus       250 ~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~  329 (410)
T 1vyh_C          250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  329 (410)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             EEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            99999999999999999999999999999999999996                    6789999999999999997654


Q ss_pred             CCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          283 DGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       283 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                              .+..+.+|...|.+++|+|++++|++++.|++|++||++++.++.              ...+|...|.+++
T Consensus       330 --------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~--------------~~~~h~~~v~~l~  387 (410)
T 1vyh_C          330 --------CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK--------------TLNAHEHFVTSLD  387 (410)
T ss_dssp             --------EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE--------------EEECCSSCEEEEE
T ss_pred             --------eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--------------EEcCCCCcEEEEE
Confidence                    677888999999999999999999999999999999998654321              1235566799999


Q ss_pred             eCCCCCEEEEec-CCEEEEEEc
Q 013578          363 LSSDGKILAATH-GSTLQWLSV  383 (440)
Q Consensus       363 ~s~~g~~l~~~~-~~~i~i~d~  383 (440)
                      |+|++.+|++|+ |+.|++|+.
T Consensus       388 ~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          388 FHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ECSSSSCEEEEETTSEEEEEC-
T ss_pred             EcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999876 999999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-36  Score=275.01  Aligned_cols=294  Identities=16%  Similarity=0.178  Sum_probs=221.1

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ..+....+|...+.+.++++++..+++++.||.|++|++.++...    ......|...|.+++|+|+++++++++.+  
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~----~~~~~~~~~~v~~v~~s~~~~~l~~~~~d--  155 (401)
T 4aez_A           82 ERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVS----ALAETDESTYVASVKWSHDGSFLSVGLGN--  155 (401)
T ss_dssp             SEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEE----EEEECCTTCCEEEEEECTTSSEEEEEETT--
T ss_pred             ceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEe----EeeecCCCCCEEEEEECCCCCEEEEECCC--
Confidence            344455588776544333334566889999999999999876532    22333477899999999999999999877  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC-CCc
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK-TGK  240 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~  240 (440)
                       ..+.+|+.........                ...+...+...       .+  ++. ++++++.|+.|++||++ .+.
T Consensus       156 -g~i~iwd~~~~~~~~~----------------~~~~~~~v~~~-------~~--~~~-~l~~~~~dg~i~i~d~~~~~~  208 (401)
T 4aez_A          156 -GLVDIYDVESQTKLRT----------------MAGHQARVGCL-------SW--NRH-VLSSGSRSGAIHHHDVRIANH  208 (401)
T ss_dssp             -SCEEEEETTTCCEEEE----------------ECCCSSCEEEE-------EE--ETT-EEEEEETTSEEEEEETTSSSC
T ss_pred             -CeEEEEECcCCeEEEE----------------ecCCCCceEEE-------EE--CCC-EEEEEcCCCCEEEEecccCcc
Confidence             4677776544311110                01111111111       11  334 89999999999999998 566


Q ss_pred             eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEe-
Q 013578          241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITAS-  318 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~-  318 (440)
                      .+..+..|...+.+++|+|++++|++|+.||.|++||++...        ....+.+|...|.+++|+|++. ++++++ 
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI--------PKFTKTNHNAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS--------EEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred             eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC--------ccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence            778888999999999999999999999999999999997654        5667888999999999999775 555654 


Q ss_pred             -CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE--e-cCCEEEEEEcCCccchhhh-h
Q 013578          319 -KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA--T-HGSTLQWLSVETGKVLDTA-E  393 (440)
Q Consensus       319 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~-~~~~i~i~d~~~~~~~~~~-~  393 (440)
                       .|+.|++||++++..+..       +        .+...+.+++|+|+++++++  | .++.|++||+.+++..... .
T Consensus       281 s~d~~i~i~d~~~~~~~~~-------~--------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~  345 (401)
T 4aez_A          281 TMDKQIHFWNAATGARVNT-------V--------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI  345 (401)
T ss_dssp             TTTCEEEEEETTTCCEEEE-------E--------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEE-------E--------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe
Confidence             799999999987644321       1        12235889999999999988  4 3899999999987654432 1


Q ss_pred             ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          394 KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       394 ~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      .+|.+.|.+++|+|++        .+|++++.||.|++|++.+++.
T Consensus       346 ~~h~~~v~~~~~s~dg--------~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          346 PAHDTRVLYSALSPDG--------RILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             ECCSSCCCEEEECTTS--------SEEEEECTTSEEEEEECCC---
T ss_pred             cCCCCCEEEEEECCCC--------CEEEEEeCCCcEEEEECCCCcc
Confidence            5899999999999998        8999999999999999988753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-38  Score=288.67  Aligned_cols=321  Identities=14%  Similarity=0.081  Sum_probs=217.1

Q ss_pred             CCCCCCCCCCcccCcccc--------ccccccCcceeEEEEccC------CCEEEEeeCCCcEEEEecCCCCCcc-----
Q 013578           67 SHSHGDKDQNKRHHPLDV--------NTLKGHGDSVTGLCFSSD------GKCLATACADGVIRVHKLDDASSKS-----  127 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~--------~~l~~H~~~V~~l~~s~d------g~~l~t~s~dg~v~vW~~~~~~~~~-----  127 (440)
                      ..++++.|+.+++|....        .++.+|.+.|++++|+|+      +.+||+|+.||+|+|||+..+....     
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            346677888888886532        236678899999999997      5799999999999999998664221     


Q ss_pred             -eeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEe
Q 013578          128 -FKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTL  206 (440)
Q Consensus       128 -~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (440)
                       .........|...|.+++|++++ .|++++.|   ..+.+|+......            +...+   ..|...+....
T Consensus       255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D---gtV~lWD~~~~~~------------~~~~~---~~H~~~V~sv~  315 (524)
T 2j04_B          255 CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN---GFVAEFDLTDPEV------------PSFYD---QVHDSYILSVS  315 (524)
T ss_dssp             CCSCSEEECCTTTCEEEEEESSSS-EEEEEETT---SEEEEEETTBCSS------------CSEEE---ECSSSCEEEEE
T ss_pred             ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC---CEEEEEECCCCCC------------ceEEe---ecccccEEEEE
Confidence             01112345678899999999864 78888877   5777887654210            00001   11222111110


Q ss_pred             ecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCC--cccEEEecCCCCeEEEEecCCCEEEEEeEecCCC
Q 013578          207 FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL--KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDG  284 (440)
Q Consensus       207 ~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  284 (440)
                           ..+++++..+|++++.|++|++||++++++...+..|..  .+.+++|+|+++.|++++.|++|++||++...  
T Consensus       316 -----~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~--  388 (524)
T 2j04_B          316 -----TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF--  388 (524)
T ss_dssp             -----EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT--
T ss_pred             -----EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc--
Confidence                 123566634999999999999999998877666655542  47899999999999999999999999997655  


Q ss_pred             ceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578          285 LVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS  364 (440)
Q Consensus       285 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  364 (440)
                            ++..+.+|.+.|++++|+|++++|++|+.|++|++||+..+ .+..    ..     ..........+..++|+
T Consensus       389 ------~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~----~~-----~~~~~~~~~~v~~v~~s  452 (524)
T 2j04_B          389 ------AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHG----IK-----NSSATQKSLRLWKWDYS  452 (524)
T ss_dssp             ------CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTC----C-----------CCCCEEEECBCC
T ss_pred             ------cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccc----cc-----cCccceeeeEEEEeccC
Confidence                  55678889999999999999999999999999999998643 1100    00     00000112346789999


Q ss_pred             CCCCEEEEecCCEEEEEEcC-CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          365 SDGKILAATHGSTLQWLSVE-TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       365 ~~g~~l~~~~~~~i~i~d~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      |++..+...++  ..+|+.. ++..+..+ .+|...|.+|+|+|++     .....|++|+.||.||||++...
T Consensus       453 p~g~~~~~~~~--~~~~~~~~~g~~~~~l-~gh~~~V~~Vafsp~~-----~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          453 IKDDKYRIDSS--YEVYPLTVNDVSKAKI-DAHGINITCTKWNETS-----AGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             SSSCEEEECCC--CCCCC--------------CCCSCCCEEECCST-----TTTTEEEEECTTSEEEEEECSCC
T ss_pred             CCCCeEEccCC--ceecccccCCcceeee-cCCCceEEEEECCCCC-----CccHHHHhhccCceEEEEEcccc
Confidence            99996643222  3334332 46666677 5899999999999996     11258999999999999998753

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=265.99  Aligned_cols=269  Identities=12%  Similarity=0.166  Sum_probs=189.1

Q ss_pred             EEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecc
Q 013578          115 IRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEH  194 (440)
Q Consensus       115 v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (440)
                      .+.|++.....         ..+...|.+++|+|||+.|++++..    .+++|+............            .
T Consensus        16 ~r~w~~~~~~~---------~~~~~~v~~~~fs~dG~~l~~~sd~----~~r~Wd~~~~~~~~~~~~------------~   70 (344)
T 4gqb_B           16 AREWNLPPNAP---------ACMERQLEAARYRSDGALLLGASSL----SGRCWAGSLWLFKDPCAA------------P   70 (344)
T ss_dssp             -------CCSC---------SSCCSEEEEEEECTTSCEEEEEECC----SSSCCCEEEEEESSGGGT------------T
T ss_pred             ccccCCCCCCc---------ccccCCEEEEEECCCCCEEEEEeCC----ceEEeeceeeeecccccc------------C
Confidence            46777654321         2244678999999999998877632    223333211100000000            0


Q ss_pred             cccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee----eeCCCCcccEEEecCCCCeEEEEecC
Q 013578          195 HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN----VDTNQLKNNMAAISPNGRFLAAAAFT  270 (440)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d  270 (440)
                      .................+.+++++  .+++++.||+|++||+.+++.+..    +.+|...|.+++|+|+|++|++|+.|
T Consensus        71 ~~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d  148 (344)
T 4gqb_B           71 NEGFCSAGVQTEAGVADLTWVGER--GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD  148 (344)
T ss_dssp             CGGGCSEEEEESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeeeeeccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC
Confidence            000111111122223344556765  688999999999999998876543    34789999999999999999999999


Q ss_pred             CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCcccccccccc
Q 013578          271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLL  349 (440)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  349 (440)
                      +.|++||+..++        .+..+.+|...|.+++|+|++. +|++++.|++|++||+++++....            .
T Consensus       149 ~~i~iwd~~~~~--------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~------------~  208 (344)
T 4gqb_B          149 ICIKVWDLAQQV--------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ------------I  208 (344)
T ss_dssp             SCEEEEETTTTE--------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE------------C
T ss_pred             CeEEEEECCCCc--------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee------------e
Confidence            999999997654        6788999999999999999885 789999999999999987654321            1


Q ss_pred             CCCCCeeeeeeEEeCCC-CCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC
Q 013578          350 DSNGATLQYDRLSLSSD-GKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK  427 (440)
Q Consensus       350 ~~~~~~~~v~~~~~s~~-g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg  427 (440)
                      ....+...+.+++|+|+ +++|++|+ |+.|++||+++++++..+ .+|...|++++|+|++.       .+|++|+.|+
T Consensus       209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~fsp~g~-------~~lasgs~D~  280 (344)
T 4gqb_B          209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-AVHSQCVTGLVFSPHSV-------PFLASLSEDC  280 (344)
T ss_dssp             C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE-ECCSSCEEEEEECSSSS-------CCEEEEETTS
T ss_pred             ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCC-------eEEEEEeCCC
Confidence            11233345788999995 56777765 899999999999999988 59999999999999861       5799999999


Q ss_pred             eEEEEeCCCCC
Q 013578          428 KVKLWLAPSLE  438 (440)
Q Consensus       428 ~i~vw~~~~~~  438 (440)
                      +|+|||+.+++
T Consensus       281 ~i~vwd~~~~~  291 (344)
T 4gqb_B          281 SLAVLDSSLSE  291 (344)
T ss_dssp             CEEEECTTCCE
T ss_pred             eEEEEECCCCc
Confidence            99999998764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-37  Score=283.12  Aligned_cols=295  Identities=18%  Similarity=0.210  Sum_probs=226.9

Q ss_pred             cCcceeEEEEccCCC-EEEEe----------eCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578           90 HGDSVTGLCFSSDGK-CLATA----------CADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH  158 (440)
Q Consensus        90 H~~~V~~l~~s~dg~-~l~t~----------s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  158 (440)
                      +...|.+++|+|+|+ +|++|          +.|+.|+||++.++....   ......|...|.+++|+|++++|++++.
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~   87 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK---PIASLQVDSKFNDLDWSHNNKIIAGALD   87 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS---CSCCCCCSSCEEEEEECSSSSCEEEEES
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc---EEEEEecCCceEEEEECCCCCeEEEEcc
Confidence            456899999999997 99999          899999999998764220   1122357789999999999999999987


Q ss_pred             cCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC
Q 013578          159 NLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT  238 (440)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~  238 (440)
                      +   ..+.+|+.........            .......|..       ....+.++|++..++++++.|+.|++||+.+
T Consensus        88 d---g~v~vw~~~~~~~~~~------------~~~~~~~h~~-------~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~  145 (416)
T 2pm9_A           88 N---GSLELYSTNEANNAIN------------SMARFSNHSS-------SVKTVKFNAKQDNVLASGGNNGEIFIWDMNK  145 (416)
T ss_dssp             S---SCEEEECCSSTTSCCC------------EEEECCCSSS-------CCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred             C---CeEEEeeccccccccc------------chhhccCCcc-------ceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence            7   4677777654210000            0000011111       1223445777344999999999999999998


Q ss_pred             Cc------eee---eeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc------ccce
Q 013578          239 GK------LLG---NVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH------KSAV  302 (440)
Q Consensus       239 ~~------~~~---~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h------~~~v  302 (440)
                      ++      ...   .+..|...+.+++|+|+ +.+|++++.||.|++||++...        .+..+..|      ...|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~~~~~~v  217 (416)
T 2pm9_A          146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK--------EVIHLSYTSPNSGIKQQL  217 (416)
T ss_dssp             TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--------EEEEECCCCCSSCCCCCE
T ss_pred             CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--------cceEEeccccccccCCce
Confidence            76      332   23568889999999999 7899999999999999986654        44455544      7899


Q ss_pred             EEEEEcCCC-CEEEEEeCCC---cEEEEecCccccccCCCCccccccccccCCC-CCeeeeeeEEeCC-CCCEEEEec-C
Q 013578          303 TWLCFAPNS-EQIITASKDG---TLRVWNINVRYHLDEDPKTLKVLPIPLLDSN-GATLQYDRLSLSS-DGKILAATH-G  375 (440)
Q Consensus       303 ~~~~~~p~~-~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~g~~l~~~~-~  375 (440)
                      .+++|+|++ .+|++++.|+   .|++||+++....             ..... +|...|.+++|+| ++++|++++ |
T Consensus       218 ~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  284 (416)
T 2pm9_A          218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-------------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRD  284 (416)
T ss_dssp             EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-------------SBCCCSCCSSCEEEEEECSSCSSCEEEEESS
T ss_pred             EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-------------cEEeecCccCceeEEEeCCCCCCeEEEEeCC
Confidence            999999997 6899999998   9999999864211             11222 5667799999999 899888876 8


Q ss_pred             CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +.|++||+.+++.+..+ .+|...|++++|+|+++       .+|++++.||.|++|++.+.+
T Consensus       285 g~v~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~-------~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          285 NTVLLWNPESAEQLSQF-PARGNWCFKTKFAPEAP-------DLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             SEEEEECSSSCCEEEEE-ECSSSCCCCEEECTTCT-------TEEEECCSSSEEEEEESCCCC
T ss_pred             CCEEEeeCCCCccceee-cCCCCceEEEEECCCCC-------CEEEEEecCCcEEEEEccCCC
Confidence            99999999999998888 58999999999999862       599999999999999998765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.4e-36  Score=264.81  Aligned_cols=295  Identities=13%  Similarity=0.171  Sum_probs=214.8

Q ss_pred             CCCCCCCCCCCcccCcccc-------ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578           66 HSHSHGDKDQNKRHHPLDV-------NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG  138 (440)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~-------~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~  138 (440)
                      ...++++.|+.+++|...-       ....+|.+.|++++|+|+|++|++|+.|++|++|++.....   .......+|.
T Consensus        29 ~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~---~~~~~~~~h~  105 (345)
T 3fm0_A           29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF---ECVTTLEGHE  105 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E---EEEEEECCCS
T ss_pred             CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe---EEEEEccCCC
Confidence            3457778889999886532       22468999999999999999999999999999999976542   2445567888


Q ss_pred             CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      ..|.+++|+|++++|++++.|   ..+.+|+.......             ........|...       ...+.++|++
T Consensus       106 ~~v~~v~~sp~~~~l~s~s~D---~~v~iwd~~~~~~~-------------~~~~~~~~h~~~-------v~~~~~~p~~  162 (345)
T 3fm0_A          106 NEVKSVAWAPSGNLLATCSRD---KSVWVWEVDEEDEY-------------ECVSVLNSHTQD-------VKHVVWHPSQ  162 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETT---SCEEEEEECTTSCE-------------EEEEEECCCCSC-------EEEEEECSSS
T ss_pred             CCceEEEEeCCCCEEEEEECC---CeEEEEECCCCCCe-------------EEEEEecCcCCC-------eEEEEECCCC
Confidence            999999999999999999987   45667765432100             000011111111       1223457888


Q ss_pred             CeEEEEeeCCceEEEEeCCCCc--eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCc-------eeee
Q 013578          219 STIIASCSEGTDISIWHGKTGK--LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGL-------VKAV  289 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-------~~~~  289 (440)
                      . +|++++.|+.|++||..+++  +...+..|...|.+++|+|++++|++|+.|++|++||........       ....
T Consensus       163 ~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~  241 (345)
T 3fm0_A          163 E-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW  241 (345)
T ss_dssp             S-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred             C-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence            7 89999999999999998775  456788899999999999999999999999999999986443211       1122


Q ss_pred             eeeeeeec-cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578          290 TSVMQLKG-HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK  368 (440)
Q Consensus       290 ~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  368 (440)
                      .++..+.+ |...|.+++|+|++..|++++.|+.|++|+.+.......     ...........+|...|.+++|+|++.
T Consensus       242 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~v~~~p~~~  316 (345)
T 3fm0_A          242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ-----PTFSLTAHLHQAHSQDVNCVAWNPKEP  316 (345)
T ss_dssp             EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTS-----CCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred             ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcce-----eeEEEEeeecccccCcEeEeEEeCCCc
Confidence            34445555 889999999999999999999999999999875432111     111111223346778899999999985


Q ss_pred             -EEEEec-CCEEEEEEcCCccchhhh
Q 013578          369 -ILAATH-GSTLQWLSVETGKVLDTA  392 (440)
Q Consensus       369 -~l~~~~-~~~i~i~d~~~~~~~~~~  392 (440)
                       +||+|+ |+.|++|+..+++.+...
T Consensus       317 ~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          317 GLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             TEEEEEETTSCEEEEEECC-------
T ss_pred             eEEEEcCCCCcEEEEEecCCCCcccc
Confidence             888765 999999999998876554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=277.68  Aligned_cols=293  Identities=16%  Similarity=0.208  Sum_probs=223.4

Q ss_pred             cccccc--cCcceeEEEEccCCC-EEEEeeCCCcEEEEec----CCCCC-----cceeeEEecC------CCCCCCceEE
Q 013578           84 VNTLKG--HGDSVTGLCFSSDGK-CLATACADGVIRVHKL----DDASS-----KSFKFLRINL------PPGGPPTAVA  145 (440)
Q Consensus        84 ~~~l~~--H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~----~~~~~-----~~~~~~~~~~------~~~~~v~~v~  145 (440)
                      ...+..  |.+.|++++|+|+|+ +||+|+.||.|++|++    .++..     ..........      .|...|.+++
T Consensus        36 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (425)
T 1r5m_A           36 VKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA  115 (425)
T ss_dssp             CEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred             hhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence            344444  569999999999999 9999999999999999    76542     1111111111      1466899999


Q ss_pred             EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578          146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC  225 (440)
Q Consensus       146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  225 (440)
                      |+|++++|++++.+   ..+.+|+......                 .....+...       ...+.++++++ +++++
T Consensus       116 ~s~~~~~l~~~~~d---g~i~i~~~~~~~~-----------------~~~~~~~~~-------v~~~~~~~~~~-~l~~~  167 (425)
T 1r5m_A          116 WSHDGNSIVTGVEN---GELRLWNKTGALL-----------------NVLNFHRAP-------IVSVKWNKDGT-HIISM  167 (425)
T ss_dssp             ECTTSSEEEEEETT---SCEEEEETTSCEE-----------------EEECCCCSC-------EEEEEECTTSS-EEEEE
T ss_pred             EcCCCCEEEEEeCC---CeEEEEeCCCCee-----------------eeccCCCcc-------EEEEEECCCCC-EEEEE
Confidence            99999999999877   4566665221100                 000111111       22234477888 89999


Q ss_pred             eCCceEEEEeCCCCceeeeeeCCCCc---------------ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeee
Q 013578          226 SEGTDISIWHGKTGKLLGNVDTNQLK---------------NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       226 ~~d~~i~vwd~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  290 (440)
                      +.|+.|++||+.+++.+..+..+...               +.+++|++++ .+++++.+|.|++||+....        
T Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~--------  238 (425)
T 1r5m_A          168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT--------  238 (425)
T ss_dssp             ETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS--------
T ss_pred             ecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc--------
Confidence            99999999999999998888877666               8999999975 58888999999999997654        


Q ss_pred             eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                      ....+.+|...|.+++|+|++++|++++.|+.|++||+++.....              ....+...+.+++|+|++ ++
T Consensus       239 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------------~~~~~~~~i~~~~~~~~~-~l  303 (425)
T 1r5m_A          239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN--------------CFYGHSQSIVSASWVGDD-KV  303 (425)
T ss_dssp             CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE--------------EECCCSSCEEEEEEETTT-EE
T ss_pred             eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce--------------EecCCCccEEEEEECCCC-EE
Confidence            566777899999999999999999999999999999998653321              112455678999999999 66


Q ss_pred             EE-ecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          371 AA-THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       371 ~~-~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ++ +.++.|++||+.+++.+..+ ..|...|.+++|+|++        .+|++++.||.|++|++.++
T Consensus       304 ~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~s~~~--------~~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          304 ISCSMDGSVRLWSLKQNTLLALS-IVDGVPIFAGRISQDG--------QKYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEE-ECTTCCEEEEEECTTS--------SEEEEEETTSCEEEEECHHH
T ss_pred             EEEeCCCcEEEEECCCCcEeEec-ccCCccEEEEEEcCCC--------CEEEEEECCCeEEEEECCCC
Confidence            65 45999999999999988887 5899999999999998        89999999999999998754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.7e-36  Score=269.03  Aligned_cols=284  Identities=14%  Similarity=0.181  Sum_probs=187.5

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC---cceEEeecccc
Q 013578           96 GLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS---GCSLYMYGEEK  172 (440)
Q Consensus        96 ~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~---~~~~~~~~~~~  172 (440)
                      .+.+.+++.++ .++.+.....|++....         ...|...|.+++|+|||++|++++.+..   ...+++|+...
T Consensus        10 g~d~g~~~~~~-~~~g~~~~~~w~~p~~~---------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~   79 (357)
T 4g56_B           10 GVDLGTENLYF-QSNGSSKGSAWGRPVTA---------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE   79 (357)
T ss_dssp             ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC
T ss_pred             CCCCCccceEE-ecCCCccccccCCCCCC---------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC
Confidence            44555555454 44456778999886432         2357788999999999999999987632   23456665443


Q ss_pred             ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee----eeeCC
Q 013578          173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG----NVDTN  248 (440)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~~~~~  248 (440)
                      .......                   .............+.++|++.  +++++.|++|++||+.+++...    ....|
T Consensus        80 ~~~~~~~-------------------~~~~~~~~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h  138 (357)
T 4g56_B           80 GAPNESL-------------------CTAGVQTEAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKYEH  138 (357)
T ss_dssp             ---CGGG-------------------CSEEEECSSCEEEEEEETTTE--EEEEETTSCEEEC--------CCCCEEECCC
T ss_pred             CCcceeE-------------------ecccCCCCCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeEEEeeccCCC
Confidence            3111000                   000011111223344577764  6678889999999999876543    23468


Q ss_pred             CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 013578          249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWN  327 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd  327 (440)
                      ...|.+++|+|++++|++|+.|+.|++||+..++        .+..+.+|...|++++|+|++. ++++++.|++|++||
T Consensus       139 ~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~--------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd  210 (357)
T 4g56_B          139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA--------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD  210 (357)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE--------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc--------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEE
Confidence            8899999999999999999999999999987654        6778899999999999999875 789999999999999


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAW  405 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~  405 (440)
                      ++++.....            .....+...+.+++|+|++ .+|++|+ |+.|++||+.+++.+..+ .+|...|++++|
T Consensus       211 ~~~~~~~~~------------~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~l~~  277 (357)
T 4g56_B          211 TRKPKPATR------------IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS-AVHSQNITGLAY  277 (357)
T ss_dssp             TTSSSCBCB------------CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE-CCCSSCEEEEEE
T ss_pred             CCCCceeee------------eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE-eccceeEEEEEE
Confidence            987644321            1222344568899999985 5777765 899999999999998888 589999999999


Q ss_pred             cCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          406 APKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +|++.       ++|++|+.||+|+|||+++++
T Consensus       278 sp~~~-------~~lasgs~D~~i~iwd~~~~~  303 (357)
T 4g56_B          278 SYHSS-------PFLASISEDCTVAVLDADFSE  303 (357)
T ss_dssp             CSSSS-------CCEEEEETTSCEEEECTTSCE
T ss_pred             cCCCC-------CEEEEEeCCCEEEEEECCCCc
Confidence            99862       589999999999999998765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.4e-36  Score=271.93  Aligned_cols=284  Identities=18%  Similarity=0.233  Sum_probs=218.5

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578           93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK  172 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~  172 (440)
                      .++.|+||++ ++||+|. |++|+|||..+++..   .......|...|++|+|+|++++|++++.+   ..+.+|+...
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~---~~~~~~~~~~~V~sv~fspdg~~lasgs~D---g~v~iWd~~~  178 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSS---AEVQLWDVQQ  178 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE---EEEECCSTTCCEEEEEECTTSSEEEEEETT---SCEEEEETTT
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE---EEEEecCCCCcEEEEEECCCCCEEEEEECC---CeEEEEEcCC
Confidence            4788999975 5777765 999999999987532   122334677889999999999999999887   4677777654


Q ss_pred             ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-ceeeeeeCCCCc
Q 013578          173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KLLGNVDTNQLK  251 (440)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~  251 (440)
                      ......                ...|......         +..++. ++++|+.|+.+++||.... ..+..+..|...
T Consensus       179 ~~~~~~----------------~~~h~~~v~~---------~s~~~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~  232 (420)
T 4gga_A          179 QKRLRN----------------MTSHSARVGS---------LSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE  232 (420)
T ss_dssp             TEEEEE----------------ECCCSSCEEE---------EEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             CcEEEE----------------EeCCCCceEE---------EeeCCC-EEEEEeCCCceeEeeecccceeeEEecccccc
Confidence            321111                1111111111         123444 8999999999999998864 456778899999


Q ss_pred             ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EEEE--EeCCCcEEEEec
Q 013578          252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIIT--ASKDGTLRVWNI  328 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s--~~~dg~i~iwd~  328 (440)
                      +..+.++|+++++++++.|+.+++|+...+..    ....+.....|...|.+++|+|.+. .+++  |+.|++|++||+
T Consensus       233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~----~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~  308 (420)
T 4gga_A          233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG----GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV  308 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESSCCSS----CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred             eeeeeecCCCCeeeeeeccccceEEeeccccc----cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence            99999999999999999999999999876542    1124556778999999999999665 4554  357999999999


Q ss_pred             CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe---cCCEEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578          329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT---HGSTLQWLSVETGKVLDTAEKAHEGEITCMAW  405 (440)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~---~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~  405 (440)
                      +++.+....               .....+.++.|+++++.++++   .|+.|++||..+++++..+ .+|.+.|++++|
T Consensus       309 ~t~~~~~~~---------------~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-~gH~~~V~~l~~  372 (420)
T 4gga_A          309 CSGACLSAV---------------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTM  372 (420)
T ss_dssp             TTTEEEEEE---------------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCSSCEEEEEE
T ss_pred             Cccccceee---------------ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEE
Confidence            977543210               112347789999999988764   3799999999999999998 599999999999


Q ss_pred             cCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          406 APKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +|++        .+|+||+.|++|+|||+....
T Consensus       373 spdg--------~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          373 SPDG--------ATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             CTTS--------SCEEEEETTTEEEEECCSCSS
T ss_pred             cCCC--------CEEEEEecCCeEEEEECCCCC
Confidence            9998        899999999999999997654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.9e-36  Score=275.79  Aligned_cols=320  Identities=16%  Similarity=0.212  Sum_probs=240.3

Q ss_pred             CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578           67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT  142 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~  142 (440)
                      ...++..|+.++.|..    .+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.++.     .......|...|.
T Consensus       134 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-----~~~~~~~h~~~v~  207 (464)
T 3v7d_B          134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-----CTHVFEGHNSTVR  207 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-----EEEEECCCCCccE
Confidence            4567788888988864    467788999999999999988 99999999999999998764     3455667889999


Q ss_pred             eEEEc--cCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEee--cccccccCCCC
Q 013578          143 AVAFA--DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLF--GASATYGTADG  218 (440)
Q Consensus       143 ~v~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  218 (440)
                      +++|+  +++.++++++.+   ..+.+|+...............   ........... ........  .......++++
T Consensus       208 ~l~~~~~~~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~  280 (464)
T 3v7d_B          208 CLDIVEYKNIKYIVTGSRD---NTLHVWKLPKESSVPDHGEEHD---YPLVFHTPEEN-PYFVGVLRGHMASVRTVSGHG  280 (464)
T ss_dssp             EEEEEESSSCEEEEEEETT---SCEEEEECCCCCCC------CC---SSEEESCGGGC-TTEEEEECCCSSCEEEEEEET
T ss_pred             EEEEecCCCCCEEEEEcCC---CcEEEeeCCCCcccccccccCC---cceEeeccCCC-eEEEEEccCccceEEEEcCCC
Confidence            99999  577888888877   4667776654322111110000   00000000000 00000000  00111124556


Q ss_pred             CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      . ++++++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||++.+.        .+..+.+|
T Consensus       281 ~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--------~~~~~~~h  351 (464)
T 3v7d_B          281 N-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--------LMYTLQGH  351 (464)
T ss_dssp             T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--------EEEEECCC
T ss_pred             C-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------EEEEEeCC
Confidence            6 89999999999999999999999999999999999999999999999999999999987654        67788999


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEE
Q 013578          299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTL  378 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i  378 (440)
                      ...|.+++|+  +.+|++++.||.|++||+++......           .    .+...+..++|+++++++++|+++.|
T Consensus       352 ~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~-----------~----~~~~~~~~~~~~~~~~~l~~~~dg~i  414 (464)
T 3v7d_B          352 TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS-----------Y----HHTNLSAITTFYVSDNILVSGSENQF  414 (464)
T ss_dssp             SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE-----------E----ECTTCCCEEEEEECSSEEEEEETTEE
T ss_pred             CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee-----------e----cCCCCccEEEEEeCCCEEEEecCCeE
Confidence            9999999997  57999999999999999986532210           0    11223567899999999999999999


Q ss_pred             EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ++||+.+++.+......|.+.|.+++|+.+         .++++++.||.+.+|-+
T Consensus       415 ~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~---------~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          415 NIYNLRSGKLVHANILKDADQIWSVNFKGK---------TLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             EEEETTTCCEEESCTTTTCSEEEEEEEETT---------EEEEEEEETTEEEEEEE
T ss_pred             EEEECCCCcEEehhhccCCCcEEEEEecCC---------EEEEEEEeCCeEEEEEe
Confidence            999999999988754689999999999854         67778888887766643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.6e-35  Score=281.82  Aligned_cols=314  Identities=16%  Similarity=0.212  Sum_probs=245.3

Q ss_pred             cccccccccCcc-eeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCc---ceeeEEecCCCCCCCceEEEccCCCeEEE
Q 013578           82 LDVNTLKGHGDS-VTGLCFSS--DGKCLATACADGVIRVHKLDDASSK---SFKFLRINLPPGGPPTAVAFADNATSIVV  155 (440)
Q Consensus        82 ~~~~~l~~H~~~-V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~---~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  155 (440)
                      ..+..+.+|.+. |++++|+|  ++++|++|+.||+|++||+.++...   ..........|...|.+++|+|+++++++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            356788999999 99999999  9999999999999999999654100   11234445567889999999999999999


Q ss_pred             EeecCC-cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEE
Q 013578          156 ATHNLS-GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIW  234 (440)
Q Consensus       156 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vw  234 (440)
                      ++.+.. ...+++|+.......                  ...+...+       ..+.++|+++.++++++.|+.|++|
T Consensus       134 ~~~~~~~~~~v~~~d~~~~~~~------------------~~~~~~~v-------~~~~~~~~~~~~l~~~~~d~~v~vw  188 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDSGNSLGE------------------VSGHSQRI-------NACHLKQSRPMRSMTVGDDGSVVFY  188 (615)
T ss_dssp             EECCSSCSEEEEETTTCCEEEE------------------CCSCSSCE-------EEEEECSSSSCEEEEEETTTEEEEE
T ss_pred             eccCCCCccEEEEEECCCccee------------------eecCCccE-------EEEEECCCCCcEEEEEeCCCcEEEE
Confidence            986532 257788874332111                  01121111       2234478887789999999999999


Q ss_pred             eCCCCceeeeeeCCCC---cccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-e---ccccceEEEE
Q 013578          235 HGKTGKLLGNVDTNQL---KNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-K---GHKSAVTWLC  306 (440)
Q Consensus       235 d~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~---~h~~~v~~~~  306 (440)
                      |+.+++.+..+..|..   .+.+++|+|+ +++|++++.||.|++||+..++        .+..+ .   +|...|.+++
T Consensus       189 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~~v~~~~  260 (615)
T 1pgu_A          189 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--------FLKYIEDDQEPVQGGIFALS  260 (615)
T ss_dssp             ETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--------EEEECCBTTBCCCSCEEEEE
T ss_pred             eCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--------EeEEecccccccCCceEEEE
Confidence            9999999999999988   8999999999 9999999999999999986654        55566 5   8999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCccccccCCCCc----------------------------------------------
Q 013578          307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKT----------------------------------------------  340 (440)
Q Consensus       307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------------------------------------------  340 (440)
                      |+ ++.+|++++.|+.|++||++++..+......                                              
T Consensus       261 ~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~  339 (615)
T 1pgu_A          261 WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHN  339 (615)
T ss_dssp             ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCS
T ss_pred             Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCC
Confidence            99 9999999999999999999865432110000                                              


Q ss_pred             -------------------------------------------------------ccccccc------------------
Q 013578          341 -------------------------------------------------------LKVLPIP------------------  347 (440)
Q Consensus       341 -------------------------------------------------------~~~~~~~------------------  347 (440)
                                                                             ...+...                  
T Consensus       340 ~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~  419 (615)
T 1pgu_A          340 KGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF  419 (615)
T ss_dssp             SCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSE
T ss_pred             CCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCC
Confidence                                                                   0000000                  


Q ss_pred             -----------------------------------------------------------c--cCCCCCeeeeeeEEeCCC
Q 013578          348 -----------------------------------------------------------L--LDSNGATLQYDRLSLSSD  366 (440)
Q Consensus       348 -----------------------------------------------------------~--~~~~~~~~~v~~~~~s~~  366 (440)
                                                                                 .  .....+...|.+++|+|+
T Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  499 (615)
T 1pgu_A          420 TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS  499 (615)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT
T ss_pred             EEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCC
Confidence                                                                       0  223345667889999999


Q ss_pred             CCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecC----------CCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          367 GKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP----------KTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       367 g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~----------~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      +++|++++ |+.|++||+.+++.+..+...|...|++++|+|          ++        .+|++++.||.|++|++.
T Consensus       500 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~--------~~l~~~~~dg~i~iw~~~  571 (615)
T 1pgu_A          500 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE--------DLVATGSLDTNIFIYSVK  571 (615)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC--------CEEEEEETTSCEEEEESS
T ss_pred             CCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCC--------CEEEEEcCCCcEEEEECC
Confidence            99999875 899999999999999888433999999999999          87        899999999999999998


Q ss_pred             CC
Q 013578          436 SL  437 (440)
Q Consensus       436 ~~  437 (440)
                      ++
T Consensus       572 ~~  573 (615)
T 1pgu_A          572 RP  573 (615)
T ss_dssp             CT
T ss_pred             CC
Confidence            86

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.4e-36  Score=275.24  Aligned_cols=300  Identities=13%  Similarity=0.172  Sum_probs=195.5

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCC------cceeeEEecCCCC------------CCCceEEEccCC
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASS------KSFKFLRINLPPG------------GPPTAVAFADNA  150 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~------~~~~~~~~~~~~~------------~~v~~v~~~~~~  150 (440)
                      .|.+.|++++|+|+|++||+|+.||.|+||++.+...      ..........+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            4789999999999999999999999999999987642      1222344555676            789999999987


Q ss_pred             --CeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC
Q 013578          151 --TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG  228 (440)
Q Consensus       151 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  228 (440)
                        ..+++++.+   ..+.+|+...........            .. ..+... .....        ......+-.....
T Consensus       106 ~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~------------~~-~~~~g~-~~~~~--------~~~~~~~~~~~~~  160 (447)
T 3dw8_B          106 NAAQFLLSTND---KTIKLWKISERDKRPEGY------------NL-KEEDGR-YRDPT--------TVTTLRVPVFRPM  160 (447)
T ss_dssp             SSSEEEEEECS---SCEEEEEEEEEEEEEECC------------SC-C---------CC--------CCCSCCCCEEEEE
T ss_pred             CcceEEEeCCC---CeEEEEecccccCCccee------------cc-cCcccc-ccCcc--------cccceEeccccch
Confidence              566666554   344444433221000000            00 000000 00000        0000000000000


Q ss_pred             ceEEEEeCCCCceeee-eeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee-------eeecccc
Q 013578          229 TDISIWHGKTGKLLGN-VDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM-------QLKGHKS  300 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~h~~  300 (440)
                      +    |... ..+... ...|...|.+++|+|++++|++| .|+.|++||++...    .   ...       .+.+|..
T Consensus       161 ~----~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~----~---~~~~~~~~~~~~~~~~~  227 (447)
T 3dw8_B          161 D----LMVE-ASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD----R---SFNIVDIKPANMEELTE  227 (447)
T ss_dssp             E----EEEE-EEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE----E---EEEEEECCCSSGGGCCC
T ss_pred             h----eeee-ccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC----c---eeeeeecccccccccCc
Confidence            0    0000 111222 35788999999999999999999 79999999986432    1   122       3668999


Q ss_pred             ceEEEEEcCCC-CEEEEEeCCCcEEEEecCccccccCCCCcccccccccc-----CCCCCeeeeeeEEeCCCCCEEEEec
Q 013578          301 AVTWLCFAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLL-----DSNGATLQYDRLSLSSDGKILAATH  374 (440)
Q Consensus       301 ~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~~~~  374 (440)
                      .|.+++|+|++ .+|++++.||.|++||++++......   ...+.....     ...++...|.+++|+|+|++|++++
T Consensus       228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  304 (447)
T 3dw8_B          228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH---SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD  304 (447)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT---CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce---eeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence            99999999998 89999999999999999876532110   111100000     0001112689999999999999987


Q ss_pred             CCEEEEEEcCC-ccchhhhhccccCC---------------eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          375 GSTLQWLSVET-GKVLDTAEKAHEGE---------------ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       375 ~~~i~i~d~~~-~~~~~~~~~~h~~~---------------v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ++.|++||+.+ ++.+..+ .+|...               +..++|+|++        .+|++|+.||.|++||+.+++
T Consensus       305 ~~~v~iwd~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~--------~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          305 YLSVKVWDLNMENRPVETY-QVHEYLRSKLCSLYENDCIFDKFECCWNGSD--------SVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             SSEEEEEETTCCSSCSCCE-ESCGGGTTTHHHHHHTSGGGCCCCEEECTTS--------SEEEEECSTTEEEEEETTTCC
T ss_pred             CCeEEEEeCCCCcccccee-eccccccccccccccccccccceEEEECCCC--------CEEEEeccCCEEEEEEcCCCc
Confidence            79999999997 7777777 467532               3349999998        899999999999999998765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.9e-35  Score=261.08  Aligned_cols=288  Identities=15%  Similarity=0.220  Sum_probs=225.7

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      |.+.|.+++|+|||++++++..++.+.+|......     ......+|...|.+++|+|+++++++++ +   ..+.+|+
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~~~~-d---g~i~iw~   78 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-----RQINTLNHGEVVCAVTISNPTRHVYTGG-K---GCVKVWD   78 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-----EEEEEECCSSCCCEEEECSSSSEEEEEC-B---SEEEEEE
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-----ccceeccCCCceEEEEEecCCcEEEEcC-C---CeEEEEE
Confidence            56789999999999999999888777666543321     1222347889999999999999999987 4   5777777


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--eeeeeeC
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--LLGNVDT  247 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~  247 (440)
                      ..........          ..... ..+...       ...+.++|+++ ++++++.|+.|++||+.+++  ....+..
T Consensus        79 ~~~~~~~~~~----------~~~~~-~~~~~~-------v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  139 (337)
T 1gxr_A           79 ISHPGNKSPV----------SQLDC-LNRDNY-------IRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTS  139 (337)
T ss_dssp             TTSTTCCSCS----------EEEEC-SCTTSB-------EEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred             CCCCCceeee----------ecccc-cCCCCc-------EEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence            6543211000          00000 011111       22234477887 89999999999999999887  5667788


Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      |...+.+++|+|++++|++++.||.|++||++..+        ....+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus       140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d  211 (337)
T 1gxr_A          140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT--------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc--------eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence            88899999999999999999999999999986554        5677888999999999999999999999999999999


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~  406 (440)
                      ++++.....       .        .+...+.+++|+|++++++++. ++.|++||+.+++... + ..|...|.+++|+
T Consensus       212 ~~~~~~~~~-------~--------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~v~~~~~~  274 (337)
T 1gxr_A          212 LREGRQLQQ-------H--------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L-HLHESCVLSLKFA  274 (337)
T ss_dssp             TTTTEEEEE-------E--------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E-CCCSSCEEEEEEC
T ss_pred             CCCCceEee-------e--------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E-cCCccceeEEEEC
Confidence            987644321       0        1234578999999999999876 8999999999987654 3 4799999999999


Q ss_pred             CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          407 PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      |++        ++|++++.||.|++|++.+++
T Consensus       275 ~~~--------~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          275 YCG--------KWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             TTS--------SEEEEEETTSEEEEEETTTCC
T ss_pred             CCC--------CEEEEecCCCcEEEEECCCCe
Confidence            998        899999999999999998875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.7e-36  Score=263.77  Aligned_cols=278  Identities=17%  Similarity=0.237  Sum_probs=207.2

Q ss_pred             CCCCCCCCCCCcccCcc---------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC
Q 013578           66 HSHSHGDKDQNKRHHPL---------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP  136 (440)
Q Consensus        66 ~~~~~~~~~~~~~~~~~---------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~  136 (440)
                      ....+++.|+.++.|..         ++..+.+|...|.+++|+|+|++|++|+.|++|++||+.+++     ......+
T Consensus        31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~-----~~~~~~~  105 (319)
T 3frx_A           31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQRFVG  105 (319)
T ss_dssp             TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEEC
T ss_pred             cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC-----eeEEEcc
Confidence            34577788888888853         367899999999999999999999999999999999998764     3455667


Q ss_pred             CCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578          137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA  216 (440)
Q Consensus       137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (440)
                      |...|.+++|+|++..+++++.|   ..+.+|+.......                 ....|...+....+.+ ......
T Consensus       106 h~~~v~~~~~~~~~~~l~s~s~D---~~i~vwd~~~~~~~-----------------~~~~h~~~v~~~~~~~-~~~~~~  164 (319)
T 3frx_A          106 HKSDVMSVDIDKKASMIISGSRD---KTIKVWTIKGQCLA-----------------TLLGHNDWVSQVRVVP-NEKADD  164 (319)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETT---SCEEEEETTSCEEE-----------------EECCCSSCEEEEEECC-C-----
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEE-----------------EEeccCCcEEEEEEcc-CCCCCC
Confidence            88999999999999999999988   46777765422100                 0011111111111100 000112


Q ss_pred             CCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       217 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      ++. .+++++.|+.|++||+++++....+..|...|.+++|+|++++|++|+.||.|++||+...+        .+..+.
T Consensus       165 ~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~--------~~~~~~  235 (319)
T 3frx_A          165 DSV-TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--------AMYTLS  235 (319)
T ss_dssp             -CC-EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--------EEEEEE
T ss_pred             Ccc-EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------EEEEec
Confidence            333 89999999999999999999999999999999999999999999999999999999986554        455555


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578          297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G  375 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~  375 (440)
                      . ...|.+++|+|++.+|++++.+ .+++|++.............      ......+...+.+++|+|||++|++|+ |
T Consensus       236 ~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~spdg~~l~sg~~D  307 (319)
T 3frx_A          236 A-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEF------AGYSKAAEPHAVSLAWSADGQTLFAGYTD  307 (319)
T ss_dssp             C-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCC------TTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred             C-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccc------cccccCcCcceeEEEECCCCCEEEEeecC
Confidence            4 4689999999999999888754 69999998654432111000      001112344578999999999999876 8


Q ss_pred             CEEEEEEcCCc
Q 013578          376 STLQWLSVETG  386 (440)
Q Consensus       376 ~~i~i~d~~~~  386 (440)
                      +.|++||+.++
T Consensus       308 g~i~vWd~~t~  318 (319)
T 3frx_A          308 NVIRVWQVMTA  318 (319)
T ss_dssp             SCEEEEEEEEC
T ss_pred             ceEEEEEEeec
Confidence            99999998764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.4e-36  Score=273.53  Aligned_cols=284  Identities=14%  Similarity=0.149  Sum_probs=214.9

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE  170 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~  170 (440)
                      ...+++++|+|+|++|++|+.||.|++||+.+.....     ....+ ..+....|+++++++++++.+   ..+.+|+.
T Consensus        56 ~~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~  126 (420)
T 3vl1_A           56 VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK-----MLKRA-DYTAVDTAKLQMRRFILGTTE---GDIKVLDS  126 (420)
T ss_dssp             CBCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT-----TSCSC-CEEEEEEECSSSCEEEEEETT---SCEEEECT
T ss_pred             cccccceeeeecCCeEEEEEcCCcEEEEEecccceee-----EEecC-CceEEEEEecCCCEEEEEECC---CCEEEEeC
Confidence            3446689999999999999999999999998654321     11122 334455789999999999877   46777775


Q ss_pred             ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCC
Q 013578          171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL  250 (440)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  250 (440)
                      .......                ....|...+       ..+.++|+++ +|++++.|+.|++||+.+++.+..+..|..
T Consensus       127 ~~~~~~~----------------~~~~h~~~v-------~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  182 (420)
T 3vl1_A          127 NFNLQRE----------------IDQAHVSEI-------TKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRA  182 (420)
T ss_dssp             TSCEEEE----------------ETTSSSSCE-------EEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSS
T ss_pred             CCcceee----------------ecccccCcc-------EEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCC
Confidence            4331110                111122222       2234478888 999999999999999999999999999999


Q ss_pred             cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec---c---------------------ccceEEEE
Q 013578          251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG---H---------------------KSAVTWLC  306 (440)
Q Consensus       251 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---h---------------------~~~v~~~~  306 (440)
                      .|.+++|+|++++|++++.||.|++||++.++        .+..+..   |                     ...+.+++
T Consensus       183 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~  254 (420)
T 3vl1_A          183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGT--------TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE  254 (420)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTTTE--------EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc--------eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence            99999999999999999999999999986543        3333332   2                     34555566


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec-CCEEEEEEcC
Q 013578          307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH-GSTLQWLSVE  384 (440)
Q Consensus       307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~i~i~d~~  384 (440)
                      |+|++++|++++.||.|++||++++.....             ....+...|.+++|+|+++ +|++|+ |+.|++||+.
T Consensus       255 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          255 FGTYGKYVIAGHVSGVITVHNVFSKEQTIQ-------------LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             SSCTTEEEEEEETTSCEEEEETTTCCEEEE-------------ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             EcCCCCEEEEEcCCCeEEEEECCCCceeEE-------------cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence            689999999999999999999986543211             1124556799999999998 888765 8999999999


Q ss_pred             Cccc-hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          385 TGKV-LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       385 ~~~~-~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +++. +..+...|...|.++.|. ++        .+|++++.||.|++|++...
T Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~~-~~--------~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          322 SPECPVGEFLINEGTPINNVYFA-AG--------ALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             CTTSCSEEEEESTTSCEEEEEEE-TT--------EEEEEETTTEEEEEEEECCT
T ss_pred             CCcCchhhhhccCCCCceEEEeC-CC--------CEEEEecCCccEEEEeccCC
Confidence            9865 556643477788888665 55        79999999999999998763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.9e-35  Score=256.96  Aligned_cols=285  Identities=18%  Similarity=0.236  Sum_probs=218.0

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578           93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK  172 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~  172 (440)
                      ..++|+||+++ +||+| .|++|+|||+.+++..   .......|...|.+++|+|+++++++++.|   ..+.+|+...
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~---~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D---g~v~iw~~~~   98 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSS---AEVQLWDVQQ   98 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE---EEEECCSTTCCEEEEEECTTSSEEEEEETT---SEEEEEETTT
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE---EEEEecCCCCeEEEEEECCCCCEEEEEECC---CcEEEeecCC
Confidence            35789999886 77766 5999999999887532   112334677889999999999999999987   5677777654


Q ss_pred             ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-ceeeeeeCCCCc
Q 013578          173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KLLGNVDTNQLK  251 (440)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~  251 (440)
                      ......                ...|.....         ....++. .+++++.++.+++|+.... ..+..+..|...
T Consensus        99 ~~~~~~----------------~~~h~~~~~---------~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (318)
T 4ggc_A           99 QKRLRN----------------MTSHSARVG---------SLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE  152 (318)
T ss_dssp             TEEEEE----------------EECCSSCEE---------EEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             ceeEEE----------------ecCccceEE---------EeecCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCc
Confidence            421110                111111111         1123444 8999999999999998865 456777889999


Q ss_pred             ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE---EEEeCCCcEEEEec
Q 013578          252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI---ITASKDGTLRVWNI  328 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l---~s~~~dg~i~iwd~  328 (440)
                      +.++.+++++++|++++.||.|++||++.++..    .........|.+.|.++.++|++..+   ++++.+++|++||.
T Consensus       153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~  228 (318)
T 4ggc_A          153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV  228 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESSCBTTB----SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred             eEEEEEcCCCCEEEEEecCcceeEEECCCCccc----ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence            999999999999999999999999999766521    12344566788899999999977643   46678899999999


Q ss_pred             CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe---cCCEEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578          329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT---HGSTLQWLSVETGKVLDTAEKAHEGEITCMAW  405 (440)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~---~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~  405 (440)
                      +.......               ..+...+..+.|+|++..++++   .|+.|++||+.+++++..+ .+|.+.|++++|
T Consensus       229 ~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l-~gH~~~V~~l~~  292 (318)
T 4ggc_A          229 CSGACLSA---------------VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTM  292 (318)
T ss_dssp             TTCCEEEE---------------EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCSSCEEEEEE
T ss_pred             cccccccc---------------ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEE
Confidence            86533211               1223447789999999977754   3799999999999999998 599999999999


Q ss_pred             cCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          406 APKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      +|++        .+|+|||.||+|+|||+....|
T Consensus       293 spdg--------~~l~S~s~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          293 SPDG--------ATVASAAADETLRLWRCFELDP  318 (318)
T ss_dssp             CTTS--------SCEEEEETTTEEEEECCSCCCC
T ss_pred             cCCC--------CEEEEEecCCeEEEEECCCCCC
Confidence            9998        8999999999999999988764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.5e-35  Score=292.62  Aligned_cols=253  Identities=17%  Similarity=0.274  Sum_probs=218.5

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ..+.+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.++.     .......|..+|.+++|+|+++           
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~-----------   68 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----EVRSIQVTETPVRAGKFIARKN-----------   68 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGT-----------
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----eEEEEecCCCcEEEEEEeCCCC-----------
Confidence            356789999999999999999999999999999999998754     3344457888999999998765           


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                                                                                +|++++.|+.|++||+.+++.+
T Consensus        69 ----------------------------------------------------------~l~~~~~dg~i~vw~~~~~~~~   90 (814)
T 3mkq_A           69 ----------------------------------------------------------WIIVGSDDFRIRVFNYNTGEKV   90 (814)
T ss_dssp             ----------------------------------------------------------EEEEEETTSEEEEEETTTCCEE
T ss_pred             ----------------------------------------------------------EEEEEeCCCeEEEEECCCCcEE
Confidence                                                                      6777888999999999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCC
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDG  321 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg  321 (440)
                      ..+..|...+.+++|+|++++|++++.||.|++||+..+.       .....+.+|...|.+++|+| ++..|++++.||
T Consensus        91 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  163 (814)
T 3mkq_A           91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (814)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence            9999999999999999999999999999999999986542       25667788999999999999 889999999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC--CCCEEEEec-CCEEEEEEcCCccchhhhhccccC
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS--DGKILAATH-GSTLQWLSVETGKVLDTAEKAHEG  398 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~  398 (440)
                      .|++||+++.....       ..      ...+...+..++|+|  ++.+|++++ ++.|++||..+++.+..+ .+|.+
T Consensus       164 ~v~vwd~~~~~~~~-------~~------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~  229 (814)
T 3mkq_A          164 TVKVWSLGQSTPNF-------TL------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMS  229 (814)
T ss_dssp             EEEEEETTCSSCSE-------EE------ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-ECCSS
T ss_pred             eEEEEECCCCccee-------EE------ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-cCCCC
Confidence            99999997543211       00      112234578899999  999998876 899999999999988887 58999


Q ss_pred             CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .|.+++|+|++        .+|++++.||.|++|++.+++
T Consensus       230 ~v~~~~~~~~~--------~~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          230 NVSFAVFHPTL--------PIIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             CEEEEEECSSS--------SEEEEEETTSCEEEEETTTCS
T ss_pred             CEEEEEEcCCC--------CEEEEEeCCCeEEEEECCCCc
Confidence            99999999998        899999999999999998764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-36  Score=278.59  Aligned_cols=254  Identities=10%  Similarity=0.031  Sum_probs=194.5

Q ss_pred             cCcceeEEEEccCC---------CEEEE-------------------eeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578           90 HGDSVTGLCFSSDG---------KCLAT-------------------ACADGVIRVHKLDDASSKSFKFLRINLPPGGPP  141 (440)
Q Consensus        90 H~~~V~~l~~s~dg---------~~l~t-------------------~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v  141 (440)
                      +.+.|.+|+|+|++         ++||+                   ++.|++|+||++.+++.... .......|.+.|
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~l~~~~~~V  210 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQTIVHSFGEV  210 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE-EEEEEEECCCSE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce-EEEEEEecCCcE
Confidence            67899999999986         66766                   45789999999987653211 112223456789


Q ss_pred             ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578          142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI  221 (440)
Q Consensus       142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (440)
                      .+++|+|++..                                                              .+++. +
T Consensus       211 ~~v~wsp~~~~--------------------------------------------------------------~~~~~-~  227 (524)
T 2j04_B          211 WDLKWHEGCHA--------------------------------------------------------------PHLVG-C  227 (524)
T ss_dssp             EEEEECSSCCC--------------------------------------------------------------SSSSC-E
T ss_pred             EEEEECCCCCC--------------------------------------------------------------CCCCc-e
Confidence            99999987420                                                              22333 8


Q ss_pred             EEEeeCCceEEEEeCCCCce-----------eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeee
Q 013578          222 IASCSEGTDISIWHGKTGKL-----------LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  290 (440)
                      |++++.|++|++||+.++..           ...+..|...+.+++|+++ ..|++|+.||+|++||++.+.       .
T Consensus       228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~-------~  299 (524)
T 2j04_B          228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE-------V  299 (524)
T ss_dssp             EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS-------S
T ss_pred             EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC-------C
Confidence            99999999999999987642           2356778899999999986 489999999999999997543       1


Q ss_pred             eeeeeeccccceEEE--EEcCCC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578          291 SVMQLKGHKSAVTWL--CFAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~--~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  367 (440)
                      ....+.+|...|.++  .|+|++ .+|+|++.|++|+|||+++..+...       +.  .+.   ....|.+++|+|++
T Consensus       300 ~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~-------~~--~~~---~~~~v~~v~fsp~~  367 (524)
T 2j04_B          300 PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT-------TV--SRF---RGSNLVPVVYCPQI  367 (524)
T ss_dssp             CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE-------EE--EEC---SCCSCCCEEEETTT
T ss_pred             ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc-------cc--ccc---ccCcccceEeCCCc
Confidence            345678899999999  578887 8999999999999999987654321       00  000   01136789999999


Q ss_pred             CEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          368 KILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       368 ~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +.+++++ |+.|++||++++.++..+ .+|.+.|++|+|+|++        .+|++|+.||+|++|++..
T Consensus       368 ~~l~s~~~d~tv~lwd~~~~~~~~~l-~gH~~~V~sva~Sp~g--------~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          368 YSYIYSDGASSLRAVPSRAAFAVHPL-VSRETTITAIGVSRLH--------PMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             TEEEEECSSSEEEEEETTCTTCCEEE-EECSSCEEEEECCSSC--------CBCEEEETTTEEECCBSCS
T ss_pred             CeEEEeCCCCcEEEEECcccccceee-ecCCCceEEEEeCCCC--------CeEEEEECCCEEEEEechH
Confidence            9888765 889999999999988777 5899999999999998        8999999999999999754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.7e-35  Score=280.83  Aligned_cols=314  Identities=12%  Similarity=0.168  Sum_probs=228.5

Q ss_pred             CCCCCCCCCcccCcc----ccccccccCc---ceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceeeEEec-C---
Q 013578           68 HSHGDKDQNKRHHPL----DVNTLKGHGD---SVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFLRIN-L---  135 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~----~~~~l~~H~~---~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~-~---  135 (440)
                      ..++..++..+.|..    .+..+.+|.+   .|.+++|+|+ +++|++++.||.|++||+.++..     .... .   
T Consensus       176 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~  250 (615)
T 1pgu_A          176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-----LKYIEDDQE  250 (615)
T ss_dssp             EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-----EEECCBTTB
T ss_pred             EEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE-----eEEeccccc
Confidence            455566777777764    4567889999   9999999999 99999999999999999987642     2333 3   


Q ss_pred             CCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC
Q 013578          136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT  215 (440)
Q Consensus       136 ~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (440)
                      .|...|.+++|+ +++++++++.+   ..+.+|+..............            .........       +. .
T Consensus       251 ~~~~~v~~~~~~-~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~-------~~-~  306 (615)
T 1pgu_A          251 PVQGGIFALSWL-DSQKFATVGAD---ATIRVWDVTTSKCVQKWTLDK------------QQLGNQQVG-------VV-A  306 (615)
T ss_dssp             CCCSCEEEEEES-SSSEEEEEETT---SEEEEEETTTTEEEEEEECCT------------TCGGGCEEE-------EE-E
T ss_pred             ccCCceEEEEEc-CCCEEEEEcCC---CcEEEEECCCCcEEEEEcCCC------------CcccCceeE-------EE-e
Confidence            788999999999 99999999877   567777765432111110000            000000000       11 1


Q ss_pred             CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC---------------------------------CC
Q 013578          216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN---------------------------------GR  262 (440)
Q Consensus       216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~---------------------------------~~  262 (440)
                      +++. ++++++.|+.|++||+.+++.+..+..|...+.+++| |+                                 ++
T Consensus       307 ~~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~  384 (615)
T 1pgu_A          307 TGNG-RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ  384 (615)
T ss_dssp             EETT-EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT
T ss_pred             CCCC-eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc
Confidence            2444 7888888888888888877777666666555555554 33                                 66


Q ss_pred             eEEEEecCCCEEEEEeEecC------------------------------------------------------------
Q 013578          263 FLAAAAFTADVKVWEIVYSK------------------------------------------------------------  282 (440)
Q Consensus       263 ~l~~~~~dg~i~i~d~~~~~------------------------------------------------------------  282 (440)
                      .|++++.|+.|++||+....                                                            
T Consensus       385 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  464 (615)
T 1pgu_A          385 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLE  464 (615)
T ss_dssp             CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEET
T ss_pred             EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeec
Confidence            66777777777777765421                                                            


Q ss_pred             -CCceeee-----eee-eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCC-C
Q 013578          283 -DGLVKAV-----TSV-MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNG-A  354 (440)
Q Consensus       283 -~~~~~~~-----~~~-~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~  354 (440)
                       ++....+     ... ..+.+|...|++++|+|++++|++++.||.|++||++++..+..              ..+ |
T Consensus       465 ~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~--------------~~~~h  530 (615)
T 1pgu_A          465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS--------------RWAFR  530 (615)
T ss_dssp             TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC--------------CSCCC
T ss_pred             CCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeE--------------eecCC
Confidence             1111000     011 45667899999999999999999999999999999987654321              223 5


Q ss_pred             eeeeeeEEeCC----------CCCEEEEec-CCEEEEEEcCCc-cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEE
Q 013578          355 TLQYDRLSLSS----------DGKILAATH-GSTLQWLSVETG-KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT  422 (440)
Q Consensus       355 ~~~v~~~~~s~----------~g~~l~~~~-~~~i~i~d~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t  422 (440)
                      ...|.+++|+|          ++++|++++ |+.|++||+.++ +.+..+ .+|.+.|++++|+|++        . |++
T Consensus       531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~h~~~v~~l~~s~~~--------~-l~s  600 (615)
T 1pgu_A          531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-NAHKDGVNNLLWETPS--------T-LVS  600 (615)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-TSSTTCEEEEEEEETT--------E-EEE
T ss_pred             CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh-hcCccceEEEEEcCCC--------C-eEE
Confidence            67799999999          999999876 899999999998 666666 6899999999999998        8 999


Q ss_pred             eeCCCeEEEEeCCC
Q 013578          423 SSVDKKVKLWLAPS  436 (440)
Q Consensus       423 ~~~Dg~i~vw~~~~  436 (440)
                      ++.||.|++|++..
T Consensus       601 ~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          601 SGADACIKRWNVVL  614 (615)
T ss_dssp             EETTSCEEEEEEC-
T ss_pred             ecCCceEEEEeeec
Confidence            99999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-35  Score=291.78  Aligned_cols=208  Identities=13%  Similarity=0.076  Sum_probs=159.9

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      .......||.+.|++++|+|++++||+|+.||+|+||+.....     . .....|...|.+++|+| +++|++++.+  
T Consensus         8 ~~~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~-----~-~~~~~~~~~V~~l~fsp-g~~L~S~s~D--   78 (902)
T 2oaj_A            8 LAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE-----V-VIKLEDRSAIKEMRFVK-GIYLVVINAK--   78 (902)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE-----E-EEECSSCCCEEEEEEET-TTEEEEEETT--
T ss_pred             eccccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE-----E-EEEcCCCCCEEEEEEcC-CCEEEEEECc--
Confidence            3344456999999999999999999999999999999987543     1 22234678999999999 8888888876  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                       ..+.+|+........             .+.    +.       .....+.++|+++ ++++|+.||.|++||+++++.
T Consensus        79 -~~v~lWd~~~~~~~~-------------~~~----~~-------~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~  132 (902)
T 2oaj_A           79 -DTVYVLSLYSQKVLT-------------TVF----VP-------GKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQL  132 (902)
T ss_dssp             -CEEEEEETTTCSEEE-------------EEE----CS-------SCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEE
T ss_pred             -CeEEEEECCCCcEEE-------------EEc----CC-------CCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcc
Confidence             577888765431110             000    00       1123345578888 899999999999999998875


Q ss_pred             e-----------eeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec------------
Q 013578          242 L-----------GNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG------------  297 (440)
Q Consensus       242 ~-----------~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------------  297 (440)
                      .           ..+..|...|.+++|+|+ +..|++|+.||.| +||++...        ....+..            
T Consensus       133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~--------~~~~~~~~~~~g~~~~~~~  203 (902)
T 2oaj_A          133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE--------IKQSFIYELPPFAPGGDFS  203 (902)
T ss_dssp             EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE--------EEEEECCCBCTTCCCSTTC
T ss_pred             ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc--------eEEEEecccCCcCCCcccc
Confidence            3           234567889999999996 5789999999999 99986543        3333433            


Q ss_pred             ------cccceEEEEEcCCCCEEEEEeCCCcEEEEecCcccc
Q 013578          298 ------HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH  333 (440)
Q Consensus       298 ------h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~  333 (440)
                            |...|++++|+|+|.+|++++.||+|++||+++++.
T Consensus       204 ~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          204 EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             cccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence                  457899999999999999999999999999976554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.6e-35  Score=304.94  Aligned_cols=354  Identities=16%  Similarity=0.181  Sum_probs=261.5

Q ss_pred             CCCCCCCCCcccCcc----ccccccccCcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578           68 HSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP  141 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v  141 (440)
                      .+++..++.++.|..    .+..+.+|.+.|.+++|+|  ++.++++|+.||.|++||+.++.     ......+|...|
T Consensus       672 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-----~~~~~~~h~~~v  746 (1249)
T 3sfz_A          672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-----CRNTMFGHTNSV  746 (1249)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-----EEEEECCCSSCE
T ss_pred             EEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-----hhheecCCCCCE
Confidence            344556777777754    4678889999999999999  55689999999999999998765     345566888999


Q ss_pred             ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccC--------------C----------------CCCCcee
Q 013578          142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQS--------------K----------------LPGPEIK  191 (440)
Q Consensus       142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~----------------~~~~~~~  191 (440)
                      .+++|+|+++.+++++.+   ..+.+|+..............              .                .......
T Consensus       747 ~~~~~sp~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~  823 (1249)
T 3sfz_A          747 NHCRFSPDDELLASCSAD---GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL  823 (1249)
T ss_dssp             EEEEECSSTTEEEEEESS---SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEE
T ss_pred             EEEEEecCCCEEEEEECC---CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEE
Confidence            999999999999999887   467777765432111100000              0                0011122


Q ss_pred             ecccccccceeEE--EeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec
Q 013578          192 WEHHKVHDKRAIL--TLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF  269 (440)
Q Consensus       192 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  269 (440)
                      |+...........  .......+.++|++. ++++++.|+.|++||+.++..+..+..|...|.+++|+|++++|++++.
T Consensus       824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~  902 (1249)
T 3sfz_A          824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD  902 (1249)
T ss_dssp             EETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeC
Confidence            3322222111111  011234456688888 8999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeEecC------------------------------------------------------------------C
Q 013578          270 TADVKVWEIVYSK------------------------------------------------------------------D  283 (440)
Q Consensus       270 dg~i~i~d~~~~~------------------------------------------------------------------~  283 (440)
                      ||.|++|++....                                                                  +
T Consensus       903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~  982 (1249)
T 3sfz_A          903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED  982 (1249)
T ss_dssp             TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence            9999999954210                                                                  0


Q ss_pred             Ccee-----eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccc---------------
Q 013578          284 GLVK-----AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKV---------------  343 (440)
Q Consensus       284 ~~~~-----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------  343 (440)
                      +...     .......+.+|...|.+++|+|++++|++++.||.|++||+.++............               
T Consensus       983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 1062 (1249)
T 3sfz_A          983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS 1062 (1249)
T ss_dssp             SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE
T ss_pred             CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence            0000     01123455679999999999999999999999999999999876554221111000               


Q ss_pred             -------ccc----cccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCC
Q 013578          344 -------LPI----PLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP  411 (440)
Q Consensus       344 -------~~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  411 (440)
                             +..    ......+|...|.+++|+|+++++++++ |+.|++||+.+++.+..+ .+|.+.|++++|+|++  
T Consensus      1063 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l-~~h~~~v~~~~~s~dg-- 1139 (1249)
T 3sfz_A         1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-KGHNGCVRCSAFSLDG-- 1139 (1249)
T ss_dssp             SSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC-CCCSSCEEEEEECSSS--
T ss_pred             CCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee-ccCCCcEEEEEECCCC--
Confidence                   000    0111224566788999999999998876 899999999999998888 5899999999999998  


Q ss_pred             CCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          412 MGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       412 ~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                            .+|++|+.||.|++|++.++++
T Consensus      1140 ------~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A         1140 ------ILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp             ------SEEEEEETTSCCCEEESSSSCC
T ss_pred             ------CEEEEEeCCCEEEEEECCCCce
Confidence                  8999999999999999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.9e-35  Score=302.17  Aligned_cols=316  Identities=16%  Similarity=0.263  Sum_probs=234.5

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ....+.+|.+.|++++|+|||++|++|+.||+|++||+.++.     .......|...|.+++|+|+++++++++.+   
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---  678 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-----KLLDIKAHEDEVLCCAFSSDDSYIATCSAD---  678 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----EEEEeccCCCCEEEEEEecCCCEEEEEeCC---
Confidence            345678999999999999999999999999999999998765     344556888999999999999999999876   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC-CCeEEEEeeCCceEEEEeCCCCce
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD-GSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                      ..+.+|+........             .+   ..+...+       .++.++++ ...++++++.|+.|++||+.+++.
T Consensus       679 ~~v~vwd~~~~~~~~-------------~~---~~~~~~v-------~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~  735 (1249)
T 3sfz_A          679 KKVKIWDSATGKLVH-------------TY---DEHSEQV-------NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC  735 (1249)
T ss_dssp             SEEEEEETTTCCEEE-------------EE---ECCSSCE-------EEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred             CeEEEEECCCCceEE-------------EE---cCCCCcE-------EEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence            467788765432110             00   1111111       12233453 333889999999999999999999


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee----------------------------------
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK----------------------------------  287 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------------------------  287 (440)
                      +..+..|...|.+++|+|++++|++++.||.|++||+..+......                                  
T Consensus       736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  815 (1249)
T 3sfz_A          736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV  815 (1249)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred             hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence            9999999999999999999999999999999999998543210000                                  


Q ss_pred             ------------eeeeee-eeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCc--------------
Q 013578          288 ------------AVTSVM-QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKT--------------  340 (440)
Q Consensus       288 ------------~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------  340 (440)
                                  ...... ...+|...|.+++|+|++.++++++.||.|++||+.++.........              
T Consensus       816 ~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~  895 (1249)
T 3sfz_A          816 AAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS  895 (1249)
T ss_dssp             EETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             EcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCC
Confidence                        000111 12378899999999999999999999999999999876543211000              


Q ss_pred             ----------ccccccccc------------------------------------CC-----CCCeeeeeeEEeCCCCCE
Q 013578          341 ----------LKVLPIPLL------------------------------------DS-----NGATLQYDRLSLSSDGKI  369 (440)
Q Consensus       341 ----------~~~~~~~~~------------------------------------~~-----~~~~~~v~~~~~s~~g~~  369 (440)
                                ...+.....                                    ..     ......+.+++|+|++++
T Consensus       896 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~  975 (1249)
T 3sfz_A          896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY  975 (1249)
T ss_dssp             EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE
T ss_pred             EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE
Confidence                      000000000                                    00     001124667788888888


Q ss_pred             EEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          370 LAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       370 l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +++|+ +|.|++||+.+++....+ .+|.+.|++++|+|++        .+|++++.||.|++|++.+++
T Consensus       976 l~~g~~~g~i~i~d~~~~~~~~~~-~~h~~~v~~l~~s~dg--------~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A          976 VAFGDEDGAIKIIELPNNRVFSSG-VGHKKAVRHIQFTADG--------KTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp             EEEEETTSCCEEEETTTTSCEEEC-CCCSSCCCCEEECSSS--------SCEEEECSSSBEEEEETTTTE
T ss_pred             EEEEcCCCCEEEEEcCCCceeeec-ccCCCceEEEEECCCC--------CEEEEEcCCCEEEEEECCCCc
Confidence            87765 788888888888877777 5899999999999998        899999999999999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=253.65  Aligned_cols=284  Identities=13%  Similarity=0.185  Sum_probs=198.3

Q ss_pred             CCCCCCCCCCcccCccc------cccc-cc-cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCC--cceeeEEecCC
Q 013578           67 SHSHGDKDQNKRHHPLD------VNTL-KG-HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASS--KSFKFLRINLP  136 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~~------~~~l-~~-H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~--~~~~~~~~~~~  136 (440)
                      ..+++..|+.+++|...      +..+ .+ |.+.|++++|+|++++|++|+.|++|+||++.....  ..........+
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  105 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG  105 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence            45677788888887543      2344 44 999999999999999999999999999999864321  11234455678


Q ss_pred             CCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578          137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA  216 (440)
Q Consensus       137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (440)
                      |...|.+++|+|++++|++++.|   ..+.+|+.......            .........|...       ...+.++|
T Consensus       106 h~~~V~~v~~sp~g~~las~s~D---~~v~iwd~~~~~~~------------~~~~~~~~~h~~~-------v~~v~~~p  163 (330)
T 2hes_X          106 HENEVKGVAWSNDGYYLATCSRD---KSVWIWETDESGEE------------YECISVLQEHSQD-------VKHVIWHP  163 (330)
T ss_dssp             ---CEEEEEECTTSCEEEEEETT---SCEEEEECCTTCCC------------CEEEEEECCCSSC-------EEEEEECS
T ss_pred             CCCcEEEEEECCCCCEEEEEeCC---CEEEEEeccCCCCC------------eEEEEEeccCCCc-------eEEEEECC
Confidence            88999999999999999999987   56777765321000            0000011112211       22334578


Q ss_pred             CCCeEEEEeeCCceEEEEeCCCC--ceeeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578          217 DGSTIIASCSEGTDISIWHGKTG--KLLGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       217 ~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                      ++. +|++++.|++|++||..++  +++..+..|...|.+++|+|+  +.+|++|+.|++|++||+..............
T Consensus       164 ~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~  242 (330)
T 2hes_X          164 SEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE  242 (330)
T ss_dssp             SSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred             CCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence            887 9999999999999998766  677888999999999999998  77899999999999999987643222233344


Q ss_pred             eeeec-cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCee-eeeeEEeCC--CCC
Q 013578          293 MQLKG-HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL-QYDRLSLSS--DGK  368 (440)
Q Consensus       293 ~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~--~g~  368 (440)
                      ..+.+ |...|.+++|++++ +|++++.||.|++||..++...        ..   .....+|.. .|.+++|+|  +++
T Consensus       243 ~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~--------~~---~~~~~~h~~~~v~~v~~~~~~~~~  310 (330)
T 2hes_X          243 AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK--------VF---AKRALCHGVYEINVVKWLELNGKT  310 (330)
T ss_dssp             EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE--------EE---EEESCTTTTSCEEEEEEC-----C
T ss_pred             eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE--------EE---eccccccccceEEEEEEecCCCce
Confidence            55555 89999999999765 7999999999999998754210        00   001123333 688999999  688


Q ss_pred             EEEEec-CCEEEEEEcCC
Q 013578          369 ILAATH-GSTLQWLSVET  385 (440)
Q Consensus       369 ~l~~~~-~~~i~i~d~~~  385 (440)
                      +|++|+ |+.|++|++++
T Consensus       311 ~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          311 ILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEETTSEEEEEEC--
T ss_pred             EEEEecCCCcEEEEEecc
Confidence            888765 99999999865

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7e-35  Score=257.71  Aligned_cols=286  Identities=17%  Similarity=0.242  Sum_probs=203.3

Q ss_pred             CCCCCCCCCCcccCcc-----------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC
Q 013578           67 SHSHGDKDQNKRHHPL-----------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL  135 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~-----------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~  135 (440)
                      ..++++.|+.+++|..           +...+.+|...|++++|+|++.+|++|+.|++|++||+.++.     ......
T Consensus        41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~-----~~~~~~  115 (343)
T 2xzm_R           41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT-----TYKRFV  115 (343)
T ss_dssp             EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC-----EEEEEE
T ss_pred             EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----EEEEEc
Confidence            4567788888888864           346789999999999999999999999999999999998764     344556


Q ss_pred             CCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecc---ccc
Q 013578          136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGA---SAT  212 (440)
Q Consensus       136 ~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  212 (440)
                      .|...|.+++|+|+++++++++.+   ..+.+|+..........              ....+...+....+.+   ...
T Consensus       116 ~h~~~v~~v~~sp~~~~l~s~~~d---~~i~~wd~~~~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~~~  178 (343)
T 2xzm_R          116 GHQSEVYSVAFSPDNRQILSAGAE---REIKLWNILGECKFSSA--------------EKENHSDWVSCVRYSPIMKSAN  178 (343)
T ss_dssp             CCCSCEEEEEECSSTTEEEEEETT---SCEEEEESSSCEEEECC--------------TTTSCSSCEEEEEECCCCCSCS
T ss_pred             CCCCcEEEEEECCCCCEEEEEcCC---CEEEEEeccCCceeeee--------------cccCCCceeeeeeecccccccc
Confidence            788999999999999999999887   56777765422110000              0001111111111100   001


Q ss_pred             ccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578          213 YGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       213 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                      ...+.+. ++++++.|+.|++|| .+.+....+..|...|.+++|+|+|++|++|+.||.|++||+.....       ..
T Consensus       179 ~~~~~~~-~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~-------~~  249 (343)
T 2xzm_R          179 KVQPFAP-YFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY-------PQ  249 (343)
T ss_dssp             CCCSSCC-EEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS-------CS
T ss_pred             ccCCCCC-EEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc-------cc
Confidence            1122234 899999999999999 45677778889999999999999999999999999999999843321       12


Q ss_pred             eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc-ccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP-IPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                      ..+ .+...|.+++|+|++.++++ +.|+.|++||+.+.......  ...... .......++...+.+++|+|+|++|+
T Consensus       250 ~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  325 (343)
T 2xzm_R          250 REF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVC--TIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF  325 (343)
T ss_dssp             EEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEE--ECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred             eee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceE--EeecCcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence            222 24567999999999987765 46889999999865432100  000000 00112235667799999999999999


Q ss_pred             Eec-CCEEEEEEcCCcc
Q 013578          372 ATH-GSTLQWLSVETGK  387 (440)
Q Consensus       372 ~~~-~~~i~i~d~~~~~  387 (440)
                      +|+ ||.|++|++++++
T Consensus       326 sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          326 AGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EEETTSEEEEEEEEEEE
T ss_pred             EecCCceEEEEEEEccC
Confidence            875 9999999987764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.2e-35  Score=257.17  Aligned_cols=266  Identities=15%  Similarity=0.183  Sum_probs=208.4

Q ss_pred             CCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578           66 HSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP  141 (440)
Q Consensus        66 ~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v  141 (440)
                      ....+++.|+.+++|..    .+..+..|...|.+++|+|+|++|++|+.|+.|++|++.+.... ........+|.+.|
T Consensus        68 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~-~~~~~~~~~h~~~v  146 (340)
T 1got_B           68 RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYL  146 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS-CEEEEEEECCSSCE
T ss_pred             CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc-ceeEEEecCCCccE
Confidence            34567778888888864    46678899999999999999999999999999999999875432 23344556788999


Q ss_pred             ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578          142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI  221 (440)
Q Consensus       142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (440)
                      .++.|++++. +++++.+   ..+.+|+........                ....|...       ...+.++|++. +
T Consensus       147 ~~~~~~~~~~-l~s~s~d---~~i~~wd~~~~~~~~----------------~~~~h~~~-------v~~~~~~~~~~-~  198 (340)
T 1got_B          147 SCCRFLDDNQ-IVTSSGD---TTCALWDIETGQQTT----------------TFTGHTGD-------VMSLSLAPDTR-L  198 (340)
T ss_dssp             EEEEEEETTE-EEEEETT---SCEEEEETTTTEEEE----------------EECCCSSC-------EEEEEECTTSS-E
T ss_pred             EEEEECCCCc-EEEEECC---CcEEEEECCCCcEEE----------------EEcCCCCc-------eEEEEECCCCC-E
Confidence            9999998876 6777766   467777755432110                00111111       12234477887 9


Q ss_pred             EEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee--ccc
Q 013578          222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK--GHK  299 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~h~  299 (440)
                      +++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++|+.||.|++||++...        .+..+.  .+.
T Consensus       199 l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~--------~~~~~~~~~~~  270 (340)
T 1got_B          199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--------ELMTYSHDNII  270 (340)
T ss_dssp             EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------EEEEECCTTCC
T ss_pred             EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--------EEEEEccCCcc
Confidence            9999999999999999999999999999999999999999999999999999999986543        233332  334


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578          300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL  378 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i  378 (440)
                      ..|.+++|+|++++|++|+.|+.|++||+.+....              ....+|...|.+++|+|+|++|++|+ |+.|
T Consensus       271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~--------------~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i  336 (340)
T 1got_B          271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA--------------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--------------EEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe--------------eEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence            57999999999999999999999999999865432              11235677899999999999999876 9999


Q ss_pred             EEEE
Q 013578          379 QWLS  382 (440)
Q Consensus       379 ~i~d  382 (440)
                      ++||
T Consensus       337 ~iWd  340 (340)
T 1got_B          337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            9996

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-36  Score=289.85  Aligned_cols=259  Identities=22%  Similarity=0.314  Sum_probs=209.6

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      +..+.||.+.|++++|+|+|++|++|+.||+|+||++.....   ........|.+.|.+++|+++.             
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---~~~~~l~~h~~~V~~l~~s~~~-------------   65 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHPK-------------   65 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---EEEEEECCCSSCEEEEEECCTT-------------
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---ccceeccCCcCceEEEEecCCC-------------
Confidence            456889999999999999999999999999999999975432   3455566788999999998761             


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--e
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--L  241 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~  241 (440)
                                                                           +++ ++++|+.||.|++||+.+++  .
T Consensus        66 -----------------------------------------------------~~~-~l~s~s~Dg~I~vwd~~~~~~~~   91 (753)
T 3jro_A           66 -----------------------------------------------------FGT-ILASCSYDGKVLIWKEENGRWSQ   91 (753)
T ss_dssp             -----------------------------------------------------SCS-EEEEEETTSCEEEEEEETTEEEE
T ss_pred             -----------------------------------------------------CCC-EEEEEeCCCeEEEEECCCCcccc
Confidence                                                                 112 78899999999999999886  6


Q ss_pred             eeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC----------
Q 013578          242 LGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP----------  309 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p----------  309 (440)
                      +..+..|...|.+++|+|+  +++|++|+.||.|++||++....      .....+.+|...|.+++|+|          
T Consensus        92 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~  165 (753)
T 3jro_A           92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------TSPIIIDAHAIGVNSASWAPATIEEDGEHN  165 (753)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC------CCCEEEECCSSCEEEEEECCCC--------
T ss_pred             cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC------cceeEeecCCCceEEEEecCcccccccccc
Confidence            7778889999999999999  99999999999999999976531      13445678999999999999          


Q ss_pred             ---CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC---CCEEEEec-CCEEEEEE
Q 013578          310 ---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD---GKILAATH-GSTLQWLS  382 (440)
Q Consensus       310 ---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~-~~~i~i~d  382 (440)
                         ++.+|++++.||.|++||+++.....          .......+|...|.+++|+|+   +.+|++++ |+.|++||
T Consensus       166 ~~~d~~~l~sgs~dg~I~iwd~~~~~~~~----------~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          166 GTKESRKFVTGGADNLVKIWKYNSDAQTY----------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             -CGGGCCEEEEETTSCEEEEEEETTTTEE----------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             cCCCCCEEEEEECCCeEEEEeccCCcccc----------eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence               58999999999999999998642210          011223456677999999999   88888866 89999999


Q ss_pred             cCCcc-----chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          383 VETGK-----VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       383 ~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +.+++     ..... ..|.+.|++++|+|++        .+|++|+.||.|++|++...
T Consensus       236 ~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg--------~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          236 QDNEQGPWKKTLLKE-EKFPDVLWRASWSLSG--------NVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             ESSSSSCCBCCBSSS-SCCSSCCCCEEECTTT--------CCEEEECSSSCEECCBCCSS
T ss_pred             CCCCCCcceeEEecc-CCCCCceEEEEEcCCC--------CEEEEEcCCCEEEEEecCCC
Confidence            99874     22222 4688999999999998        89999999999999999853

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.2e-35  Score=267.88  Aligned_cols=307  Identities=10%  Similarity=0.129  Sum_probs=227.2

Q ss_pred             CCCCCCCCCcccCccc----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578           68 HSHGDKDQNKRHHPLD----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA  143 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~~----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~  143 (440)
                      ..++..++..+.|...    ...+.+| ..+....|+|++++|++|+.||.|++||+.++.     .......|...|.+
T Consensus        71 l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~  144 (420)
T 3vl1_A           71 LYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----QREIDQAHVSEITK  144 (420)
T ss_dssp             EEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----EEEETTSSSSCEEE
T ss_pred             EEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----eeeecccccCccEE
Confidence            3455667777777653    4455566 455566789999999999999999999988653     34555688899999


Q ss_pred             EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578          144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA  223 (440)
Q Consensus       144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  223 (440)
                      ++|+|++++|++++.+   ..+.+|+.......             ..+   ..|...       ...+.++|+++ +|+
T Consensus       145 ~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~-------------~~~---~~h~~~-------v~~~~~~~~~~-~l~  197 (420)
T 3vl1_A          145 LKFFPSGEALISSSQD---MQLKIWSVKDGSNP-------------RTL---IGHRAT-------VTDIAIIDRGR-NVL  197 (420)
T ss_dssp             EEECTTSSEEEEEETT---SEEEEEETTTCCCC-------------EEE---ECCSSC-------EEEEEEETTTT-EEE
T ss_pred             EEECCCCCEEEEEeCC---CeEEEEeCCCCcCc-------------eEE---cCCCCc-------EEEEEEcCCCC-EEE
Confidence            9999999999999887   56777776543111             001   111111       22334478888 899


Q ss_pred             EeeCCceEEEEeCCCCceeeeeeCC------------------------CCcccEEEecCCCCeEEEEecCCCEEEEEeE
Q 013578          224 SCSEGTDISIWHGKTGKLLGNVDTN------------------------QLKNNMAAISPNGRFLAAAAFTADVKVWEIV  279 (440)
Q Consensus       224 s~~~d~~i~vwd~~~~~~~~~~~~~------------------------~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  279 (440)
                      +++.|+.|++||+++++.+..+..+                        ...+.+++|+|++++|++|+.||.|++||++
T Consensus       198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  277 (420)
T 3vl1_A          198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF  277 (420)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT
T ss_pred             EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC
Confidence            9999999999999999988887643                        2455666778999999999999999999997


Q ss_pred             ecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeee
Q 013578          280 YSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY  358 (440)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  358 (440)
                      ...       ........|...|.+++|+|++. +|++++.||.|++||++++...      ...+.      ..+...+
T Consensus       278 ~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~------~~~~~------~~~~~~v  338 (420)
T 3vl1_A          278 SKE-------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP------VGEFL------INEGTPI  338 (420)
T ss_dssp             TCC-------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC------SEEEE------ESTTSCE
T ss_pred             CCc-------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc------hhhhh------ccCCCCc
Confidence            654       12223346889999999999998 9999999999999999865321      11110      1133456


Q ss_pred             eeEEeCCCCCEEEEec-CCEEEEEEcCCccch---------hhhhccccCCeEEEEecCCCCCCCCCcce---EEEEeeC
Q 013578          359 DRLSLSSDGKILAATH-GSTLQWLSVETGKVL---------DTAEKAHEGEITCMAWAPKTIPMGNQQVS---VLATSSV  425 (440)
Q Consensus       359 ~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~---------~~~~~~h~~~v~~v~~~~~~~~~~~~~~~---~l~t~~~  425 (440)
                      ..+.+ +++++|++++ |+.|++|++...+..         ..+ ..|.+.|.+++|+|++        .   .|++++.
T Consensus       339 ~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~--------~~~g~l~a~g~  408 (420)
T 3vl1_A          339 NNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFL-VSNDDAVSQFCYVSDD--------ESNGEVLEVGK  408 (420)
T ss_dssp             EEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEE-CCSSCCCCEEEEECCS--------SSSCEEEEEET
T ss_pred             eEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEE-ccCCcceEEEEEccCC--------CCcceEEEEcC
Confidence            67755 5777888765 899999998874221         122 4688899999999998        5   6777888


Q ss_pred             CCeEEEEeCCC
Q 013578          426 DKKVKLWLAPS  436 (440)
Q Consensus       426 Dg~i~vw~~~~  436 (440)
                      +|.+.+|++++
T Consensus       409 ~g~~~~~~~~~  419 (420)
T 3vl1_A          409 NNFCALYNLSN  419 (420)
T ss_dssp             TTEEEEEESCC
T ss_pred             CceEEEEeccC
Confidence            99999999976

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.2e-35  Score=259.48  Aligned_cols=295  Identities=14%  Similarity=0.092  Sum_probs=221.0

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCC-eEEEEeecCCcc
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNAT-SIVVATHNLSGC  163 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~~~~~~  163 (440)
                      ....+|.+.|++++|+|++++|++|+.||.|++|++.......  .......|...|.+++|+|+++ ++++++.+   .
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g   79 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV--DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ---G   79 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE--EEEEEEECSSCEEEEEEEESSSEEEEEEETT---S
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc--cceeeeecCCceEEEEECCCCCcEEEEEcCC---C
Confidence            3456899999999999999999999999999999998765221  1223346788999999999999 89998876   4


Q ss_pred             eEEeecc-ccccccccccccCCCCCCceeeccccc--ccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC--
Q 013578          164 SLYMYGE-EKAISTNEGKQQSKLPGPEIKWEHHKV--HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT--  238 (440)
Q Consensus       164 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~--  238 (440)
                      .+.+|+. .....              ..   ...  +...+.       .+.+++ +. ++++++.|+.|++||+++  
T Consensus        80 ~i~~wd~~~~~~~--------------~~---~~~~~~~~~v~-------~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~  133 (342)
T 1yfq_A           80 EILKVDLIGSPSF--------------QA---LTNNEANLGIC-------RICKYG-DD-KLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             CEEEECSSSSSSE--------------EE---CBSCCCCSCEE-------EEEEET-TT-EEEEEETTSEEEEECHHHHT
T ss_pred             eEEEEEeccCCce--------------Ee---ccccCCCCceE-------EEEeCC-CC-EEEEEcCCCeEEEEcccccc
Confidence            6777776 44311              00   011  111111       222355 55 899999999999999987  


Q ss_pred             -------CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEe-cCCCceeeeeeeeeeeccccceEEEEEcC-
Q 013578          239 -------GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVY-SKDGLVKAVTSVMQLKGHKSAVTWLCFAP-  309 (440)
Q Consensus       239 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-  309 (440)
                             ++++..+. +...+.+++|++++  +++++.|+.|++||++. ...      ........|...|.+++|+| 
T Consensus       134 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~~~~i~~i~~~~~  204 (342)
T 1yfq_A          134 DGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD------NGTIEESGLKYQIRDVALLPK  204 (342)
T ss_dssp             TBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC------CCEEEECSCSSCEEEEEECSG
T ss_pred             cccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc------cceeeecCCCCceeEEEECCC
Confidence                   77776666 77889999999987  99999999999999976 331      01223446888999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEecCcc--ccccCCCCcccccccc--ccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578          310 NSEQIITASKDGTLRVWNINVR--YHLDEDPKTLKVLPIP--LLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE  384 (440)
Q Consensus       310 ~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~  384 (440)
                      ++.+|++++.||.|++|+++..  ....   .....+...  ......+...|.+++|+|++++|++++ |+.|++||+.
T Consensus       205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          205 EQEGYACSSIDGRVAVEFFDDQGDDYNS---SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             GGCEEEEEETTSEEEEEECCTTCCSTTC---TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             CCCEEEEEecCCcEEEEEEcCCCccccc---ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence            9999999999999999999864  1000   011111100  001113345799999999999998876 8999999999


Q ss_pred             Cccchhhhhccc-cCCeEEEEecCCCCCCCCCcceEEEEeeCCCe-EEEEe
Q 013578          385 TGKVLDTAEKAH-EGEITCMAWAPKTIPMGNQQVSVLATSSVDKK-VKLWL  433 (440)
Q Consensus       385 ~~~~~~~~~~~h-~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~-i~vw~  433 (440)
                      +++.+..+ .+| .+.|++++  |++        .+|++++.||. .+.|.
T Consensus       282 ~~~~~~~~-~~~h~~~v~~~~--~~~--------~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          282 TRKKIKNF-AKFNEDSVVKIA--CSD--------NILCLATSDDTFKTNAA  321 (342)
T ss_dssp             TTEEEEEC-CCCSSSEEEEEE--ECS--------SEEEEEEECTHHHHCSS
T ss_pred             cHhHhhhh-hcccCCCceEec--CCC--------CeEEEEecCCccccccc
Confidence            99998888 477 99999999  887        89999999999 44444

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.4e-34  Score=265.48  Aligned_cols=286  Identities=19%  Similarity=0.257  Sum_probs=218.5

Q ss_pred             ccccccccCcce-eEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           83 DVNTLKGHGDSV-TGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        83 ~~~~l~~H~~~V-~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ....+.+|.+.| .++.+  ++++|++|+.||+|++||+.++.     ......+|.+.|.+++|++++ .+++++.+  
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~l~s~s~d--  182 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHGG-ILVSGSTD--  182 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECSTT-EEEEEETT--
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----EEEEEeCCCcCEEEEEEcCCC-EEEEEeCC--
Confidence            356789998885 66666  67899999999999999998764     445566899999999999988 78888776  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                       ..+.+|+.........                ...|...+....+     ...+++. ++++++.|+.|++||+.++..
T Consensus       183 -g~i~vwd~~~~~~~~~----------------~~~h~~~v~~l~~-----~~~~~~~-~l~s~s~d~~i~vwd~~~~~~  239 (464)
T 3v7d_B          183 -RTVRVWDIKKGCCTHV----------------FEGHNSTVRCLDI-----VEYKNIK-YIVTGSRDNTLHVWKLPKESS  239 (464)
T ss_dssp             -SCEEEEETTTTEEEEE----------------ECCCSSCEEEEEE-----EESSSCE-EEEEEETTSCEEEEECCCCCC
T ss_pred             -CCEEEEECCCCcEEEE----------------ECCCCCccEEEEE-----ecCCCCC-EEEEEcCCCcEEEeeCCCCcc
Confidence             5677776654321110                0111111111111     0123444 899999999999999987653


Q ss_pred             -----------------------eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          242 -----------------------LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       242 -----------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                                             +..+..|...+.++  ++++++|++|+.||.|++||++..+        .+..+.+|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~--------~~~~~~~~  309 (464)
T 3v7d_B          240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK--------CLYILSGH  309 (464)
T ss_dssp             C------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE--------EEEEECCC
T ss_pred             cccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc--------EEEEecCC
Confidence                                   34455666666554  7889999999999999999996554        67778899


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCE
Q 013578          299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGST  377 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~  377 (440)
                      ...|.+++|+|++++|++++.||.|++||++++..+.              ...+|...|.+++|+  +.+|+++ .|+.
T Consensus       310 ~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~--------------~~~~h~~~v~~~~~~--~~~l~s~s~dg~  373 (464)
T 3v7d_B          310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY--------------TLQGHTALVGLLRLS--DKFLVSAAADGS  373 (464)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE--------------EECCCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--------------EEeCCCCcEEEEEEc--CCEEEEEeCCCc
Confidence            9999999999999999999999999999998765432              223556678899997  4677765 5999


Q ss_pred             EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      |++||+.+++.....  .|...+..++|++++        .+|++|+ ||.|++||+.+++
T Consensus       374 v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~l~~~~-dg~i~iwd~~~g~  423 (464)
T 3v7d_B          374 IRGWDANDYSRKFSY--HHTNLSAITTFYVSD--------NILVSGS-ENQFNIYNLRSGK  423 (464)
T ss_dssp             EEEEETTTCCEEEEE--ECTTCCCEEEEEECS--------SEEEEEE-TTEEEEEETTTCC
T ss_pred             EEEEECCCCceeeee--cCCCCccEEEEEeCC--------CEEEEec-CCeEEEEECCCCc
Confidence            999999998876655  377788899999998        7888888 9999999999876

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.3e-34  Score=257.31  Aligned_cols=268  Identities=15%  Similarity=0.207  Sum_probs=193.0

Q ss_pred             CCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC
Q 013578          136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT  215 (440)
Q Consensus       136 ~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (440)
                      .|...|.+++|+|++++|++++.    ..+.+|+............................     .........+.++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~----~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~s  132 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCN----KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS-----PSSDLYIRSVCFS  132 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECB----SCEEEEETTTCCEEEEECC----------------------CCCCBEEEEEEC
T ss_pred             CCCCEEEEEEECCCCCEEEEEcC----CcEEEEEecCCCEEEEecCcccccccccccccccc-----CCCceeEEEEEEC
Confidence            57899999999999999998763    24566654432211110000000000000000000     0000012345568


Q ss_pred             CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578          216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      |+++ +|++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||++.+.        ....+
T Consensus       133 ~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~--------~~~~~  203 (393)
T 1erj_A          133 PDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ--------CSLTL  203 (393)
T ss_dssp             TTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------EEEEE
T ss_pred             CCCC-EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe--------eEEEE
Confidence            8988 89999999999999999999999999999999999999999999999999999999986553        33334


Q ss_pred             eccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578          296 KGHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH  374 (440)
Q Consensus       296 ~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  374 (440)
                      . +...+.+++|+| ++.+|++++.|+.|++||++++..+..       +........+|...|.+++|+|+|++|++|+
T Consensus       204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~-------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s  275 (393)
T 1erj_A          204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER-------LDSENESGTGHKDSVYSVVFTRDGQSVVSGS  275 (393)
T ss_dssp             E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE-------EC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEe-------ecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence            3 567899999999 899999999999999999987644321       1111122246677899999999999999876


Q ss_pred             -CCEEEEEEcCCcc------------chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          375 -GSTLQWLSVETGK------------VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       375 -~~~i~i~d~~~~~------------~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                       |+.|++||+.+..            +...+ .+|...|.+++|+|++        .+|++|+.||.|++||+.+++
T Consensus       276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~--------~~l~sgs~D~~v~iwd~~~~~  343 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQND--------EYILSGSKDRGVLFWDKKSGN  343 (393)
T ss_dssp             TTSEEEEEEC---------------CEEEEE-ECCSSCEEEEEECGGG--------CEEEEEETTSEEEEEETTTCC
T ss_pred             CCCEEEEEECCCCCCcccccCCCCCcceEEE-ecccCcEEEEEECCCC--------CEEEEEeCCCeEEEEECCCCe
Confidence             8999999997643            22334 4799999999999998        899999999999999998875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=258.13  Aligned_cols=302  Identities=12%  Similarity=0.140  Sum_probs=218.6

Q ss_pred             cccccccccCcceeEEEEccC---CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578           82 LDVNTLKGHGDSVTGLCFSSD---GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH  158 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~d---g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  158 (440)
                      ..+..+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+....   .......|...|.+++|+|++++|++++.
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---IPKAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---EEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---eEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence            456788999999999999999   699999999999999999873322   22444568899999999999999999987


Q ss_pred             cCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccccc--CCCCCeEEEEeeCCceEEEEeC
Q 013578          159 NLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYG--TADGSTIIASCSEGTDISIWHG  236 (440)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~d~~i~vwd~  236 (440)
                      +   ..+.+|+........                 ...+..       ....+.+  ++++. ++++++.|+.|++||+
T Consensus       107 d---g~v~iwd~~~~~~~~-----------------~~~~~~-------~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A          107 D---KTAKMWDLSSNQAIQ-----------------IAQHDA-------PVKTIHWIKAPNYS-CVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             T---SEEEEEETTTTEEEE-----------------EEECSS-------CEEEEEEEECSSCE-EEEEEETTSEEEEECS
T ss_pred             C---CcEEEEEcCCCCcee-----------------eccccC-------ceEEEEEEeCCCCC-EEEEccCCCcEEEEEC
Confidence            7   567777765432110                 001111       1112223  56665 8999999999999999


Q ss_pred             CCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE---
Q 013578          237 KTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ---  313 (440)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~---  313 (440)
                      ++++.+..+..+. .+.++.+  .+..+++++.++.+++|+++...    .......  ..+...+.++.+.++...   
T Consensus       159 ~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  229 (368)
T 3mmy_A          159 RSSNPMMVLQLPE-RCYCADV--IYPMAVVATAERGLIVYQLENQP----SEFRRIE--SPLKHQHRCVAIFKDKQNKPT  229 (368)
T ss_dssp             SCSSCSEEEECSS-CEEEEEE--ETTEEEEEEGGGCEEEEECSSSC----EEEEECC--CSCSSCEEEEEEEECTTSCEE
T ss_pred             CCCcEEEEEecCC-CceEEEe--cCCeeEEEeCCCcEEEEEecccc----chhhhcc--ccccCCCceEEEcccCCCCCC
Confidence            9999988887764 3444444  45688999999999999986543    1111222  223445566666665544   


Q ss_pred             -EEEEeCCCcEEEEecCccccccCCCCccccccc-----cccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc
Q 013578          314 -IITASKDGTLRVWNINVRYHLDEDPKTLKVLPI-----PLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG  386 (440)
Q Consensus       314 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~  386 (440)
                       +++++.||.|++||++......    ....+..     .......+...|.+++|+|++++|++++ |+.|++||+.++
T Consensus       230 ~~~~~~~dg~i~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          230 GFALGSIEGRVAIHYINPPNPAK----DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             EEEEEETTSEEEEEESSCSCHHH----HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             eEEEecCCCcEEEEecCCCCccc----cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence             9999999999999998653210    0000000     0011122233699999999999999875 899999999999


Q ss_pred             cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          387 KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       387 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +.+..+ .+|...|++++|+|++        .+|++++.|+..+.|++-.
T Consensus       306 ~~~~~~-~~~~~~v~~~~~s~~g--------~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          306 TKLKTS-EQLDQPISACCFNHNG--------NIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             EEEEEC-CCCSSCEEEEEECTTS--------SCEEEEECCCSTTCGGGCC
T ss_pred             cEEEEe-cCCCCCceEEEECCCC--------CeEEEEecccccccccccC
Confidence            999888 5899999999999998        8999999998776666544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.2e-35  Score=261.60  Aligned_cols=283  Identities=13%  Similarity=0.182  Sum_probs=211.8

Q ss_pred             CCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCC
Q 013578           65 PHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPG  138 (440)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~  138 (440)
                      ....++++.|+.+++|..    .+..+.+|...|.+++|+|+|++|++|+.|+.+++|++......  .........+|.
T Consensus        78 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~  157 (380)
T 3iz6_a           78 KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK  157 (380)
T ss_dssp             SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCS
T ss_pred             CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCC
Confidence            344677888999999965    46788999999999999999999999999999999999754311  122334566788


Q ss_pred             CCCceEEEccCC-CeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC-
Q 013578          139 GPPTAVAFADNA-TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA-  216 (440)
Q Consensus       139 ~~v~~v~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  216 (440)
                      +.+.++.|+|++ ..+++++.|   ..+.+|+............           .....|...+...       .+.+ 
T Consensus       158 ~~v~~~~~~~~~~~~l~s~s~D---~~i~~wd~~~~~~~~~~~~-----------~~~~~h~~~v~~~-------~~~~~  216 (380)
T 3iz6_a          158 GYASSCQYVPDQETRLITGSGD---QTCVLWDVTTGQRISIFGS-----------EFPSGHTADVLSL-------SINSL  216 (380)
T ss_dssp             SCCCCCBCCSSSSSCEEEECTT---SCEEEECTTTCCEEEEECC-----------CSSSSCCSCEEEE-------EECSS
T ss_pred             cceEEEEEecCCCCEEEEECCC---CcEEEEEcCCCcEEEEeec-----------ccCCCCccCeEEE-------EeecC
Confidence            999999999975 458888776   5778887655421111000           0001122222211       1233 


Q ss_pred             CCCeEEEEeeCCceEEEEeCC-CCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578          217 DGSTIIASCSEGTDISIWHGK-TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       217 ~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      ++. ++++|+.|++|++||++ .++.+..+.+|...|.+++|+|++++|++|+.||+|++||++.+.        .+..+
T Consensus       217 ~~~-~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~--------~~~~~  287 (380)
T 3iz6_a          217 NAN-MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH--------QLQVY  287 (380)
T ss_dssp             SCC-EEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE--------EEEEE
T ss_pred             CCC-EEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc--------EEEEe
Confidence            444 99999999999999998 457788899999999999999999999999999999999997654        33333


Q ss_pred             ecc-------ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578          296 KGH-------KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK  368 (440)
Q Consensus       296 ~~h-------~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  368 (440)
                      ..+       ...|++++|+|+|++|++|+.||.|++||+..+.....       +   .....+|...|.+++|+|+|+
T Consensus       288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~-------~---~~~~~~h~~~v~~l~~s~dg~  357 (380)
T 3iz6_a          288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN-------L---GTLQNSHEGRISCLGLSSDGS  357 (380)
T ss_dssp             CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEE-------E---CCSCSSCCCCCCEEEECSSSS
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEE-------E---ecccCCCCCceEEEEECCCCC
Confidence            322       23589999999999999999999999999976543211       0   011245677899999999999


Q ss_pred             EEEEec-CCEEEEEEcCCcc
Q 013578          369 ILAATH-GSTLQWLSVETGK  387 (440)
Q Consensus       369 ~l~~~~-~~~i~i~d~~~~~  387 (440)
                      +|++|+ |+.|++|++...+
T Consensus       358 ~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          358 ALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEEEECTTSCEEEEECCSSS
T ss_pred             EEEEeeCCCCEEEEecCCCc
Confidence            999987 9999999987664

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.6e-35  Score=264.99  Aligned_cols=270  Identities=14%  Similarity=0.165  Sum_probs=213.5

Q ss_pred             CCCCCCCcccCcc--------ccccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcc--eeeEEecCCCC
Q 013578           70 HGDKDQNKRHHPL--------DVNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKS--FKFLRINLPPG  138 (440)
Q Consensus        70 ~~~~~~~~~~~~~--------~~~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~--~~~~~~~~~~~  138 (440)
                      .+..++.+.+|+.        .+..+.+|.+.|++++|+| ++++|++|+.||+|+||++.++....  .........|.
T Consensus        52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~  131 (402)
T 2aq5_A           52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT  131 (402)
T ss_dssp             CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS
T ss_pred             EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC
Confidence            4566677777653        3556889999999999999 99999999999999999998764210  01233445677


Q ss_pred             CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      ..|.+++|+|++..                                                                  
T Consensus       132 ~~v~~~~~~p~~~~------------------------------------------------------------------  145 (402)
T 2aq5_A          132 KRVGIVAWHPTAQN------------------------------------------------------------------  145 (402)
T ss_dssp             SCEEEEEECSSBTT------------------------------------------------------------------
T ss_pred             CeEEEEEECcCCCC------------------------------------------------------------------
Confidence            88999999887521                                                                  


Q ss_pred             CeEEEEeeCCceEEEEeCCCCceeeee--eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-
Q 013578          219 STIIASCSEGTDISIWHGKTGKLLGNV--DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-  295 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-  295 (440)
                        ++++++.|+.|++||+.+++.+..+  ..|...+.+++|+|++++|++++.||.|++||++.+.        .+..+ 
T Consensus       146 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~  215 (402)
T 2aq5_A          146 --VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT--------VVAEKD  215 (402)
T ss_dssp             --EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--------EEEEEE
T ss_pred             --EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc--------eeeeec
Confidence              7888899999999999999999888  7889999999999999999999999999999987654        45566 


Q ss_pred             eccccc-eEEEEEcCCCCEEEEE---eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          296 KGHKSA-VTWLCFAPNSEQIITA---SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       296 ~~h~~~-v~~~~~~p~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                      .+|.+. +.++.|+|++.+|+++   +.|+.|++||+++....      ...     . ...+...+..++|+|++++|+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~------~~~-----~-~~~~~~~v~~~~~s~~~~~l~  283 (402)
T 2aq5_A          216 RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP------LSL-----Q-ELDTSSGVLLPFFDPDTNIVY  283 (402)
T ss_dssp             CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC------SEE-----E-ECCCCSSCEEEEEETTTTEEE
T ss_pred             cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC------ceE-----E-eccCCCceeEEEEcCCCCEEE
Confidence            678776 8999999999999999   78999999999865321      000     0 112334578899999999886


Q ss_pred             -Eec-CCEEEEEEcCCccc-hhhhhcc--ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          372 -ATH-GSTLQWLSVETGKV-LDTAEKA--HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       372 -~~~-~~~i~i~d~~~~~~-~~~~~~~--h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                       +|. |+.|++||+.+++. +..+ ..  |...|.+++|+|++        .+++  +.|+.+++|++.+++
T Consensus       284 ~~g~~dg~i~i~d~~~~~~~~~~l-~~~~~~~~v~~~~~sp~~--------~~~~--s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          284 LCGKGDSSIRYFEITSEAPFLHYL-SMFSSKESQRGMGYMPKR--------GLEV--NKCEIARFYKLHERK  344 (402)
T ss_dssp             EEETTCSCEEEEEECSSTTCEEEE-EEECCSSCCSEEEECCGG--------GSCG--GGTEEEEEEEEETTE
T ss_pred             EEEcCCCeEEEEEecCCCcceEee-cccccCCcccceEEeccc--------ccce--ecceeEEEEEcCCCc
Confidence             454 89999999999884 3333 23  56899999999997        6665  357799999987653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-33  Score=258.11  Aligned_cols=280  Identities=23%  Similarity=0.346  Sum_probs=218.3

Q ss_pred             ccccccccCcce-eEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           83 DVNTLKGHGDSV-TGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        83 ~~~~l~~H~~~V-~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ....+.+|.+.| .+  ++++|++|++|+.||+|++||+.++.     ......+|...|.+++|+  +..+++++.+  
T Consensus       110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~--~~~l~s~~~d--  178 (445)
T 2ovr_B          110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMR--DNIIISGSTD--  178 (445)
T ss_dssp             CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCC-----EEEECCCCSSCEEEEEEE--TTEEEEEETT--
T ss_pred             eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCc-----EEEEEcCCCCCEEEEEec--CCEEEEEeCC--
Confidence            456789999875 55  44578999999999999999998764     445566888999999997  5688888877  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                       ..+.+|+.........                ...+...+....         .++. .+++++.|+.|++||+.+++.
T Consensus       179 -g~i~vwd~~~~~~~~~----------------~~~h~~~v~~~~---------~~~~-~l~s~s~dg~i~~wd~~~~~~  231 (445)
T 2ovr_B          179 -RTLKVWNAETGECIHT----------------LYGHTSTVRCMH---------LHEK-RVVSGSRDATLRVWDIETGQC  231 (445)
T ss_dssp             -SCEEEEETTTTEEEEE----------------ECCCSSCEEEEE---------EETT-EEEEEETTSEEEEEESSSCCE
T ss_pred             -CeEEEEECCcCcEEEE----------------ECCCCCcEEEEE---------ecCC-EEEEEeCCCEEEEEECCCCcE
Confidence             4677776544321110                011111111111         1234 799999999999999999999


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      +..+..|...+.++.+  +++++++|+.||.|++||++...        .+..+.+|...|.+++|  ++.+|++++.|+
T Consensus       232 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~  299 (445)
T 2ovr_B          232 LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET--------CLHTLQGHTNRVYSLQF--DGIHVVSGSLDT  299 (445)
T ss_dssp             EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE--------EEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred             EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc--------EeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence            9999999999999998  78999999999999999987654        67778899999999999  788999999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhc--cccC
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEK--AHEG  398 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~--~h~~  398 (440)
                      .|++||++++..+.              ...++...+.++.+  ++.++++++ |+.|++||+.+++.+..+..  .|..
T Consensus       300 ~i~i~d~~~~~~~~--------------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  363 (445)
T 2ovr_B          300 SIRVWDVETGNCIH--------------TLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS  363 (445)
T ss_dssp             CEEEEETTTCCEEE--------------EECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS
T ss_pred             eEEEEECCCCCEEE--------------EEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCC
Confidence            99999998764431              11234445666665  566777765 89999999999998877731  3888


Q ss_pred             CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .|++++|++          .+|++|+.||.|++|++.+++
T Consensus       364 ~v~~~~~~~----------~~l~s~~~dg~v~iwd~~~~~  393 (445)
T 2ovr_B          364 AVTCLQFNK----------NFVITSSDDGTVKLWDLKTGE  393 (445)
T ss_dssp             CEEEEEECS----------SEEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEECC----------CEEEEEeCCCeEEEEECCCCc
Confidence            999999975          589999999999999999875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9e-34  Score=260.05  Aligned_cols=299  Identities=14%  Similarity=0.219  Sum_probs=233.9

Q ss_pred             CCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578           68 HSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA  143 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~  143 (440)
                      ..++..++.++.|..    .+..+.+|.+.|++++|+  +++|++|+.||+|++||+.+++     .......|...|.+
T Consensus       132 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~  204 (445)
T 2ovr_B          132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-----CIHTLYGHTSTVRC  204 (445)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEE
T ss_pred             EEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-----EEEEECCCCCcEEE
Confidence            345667888888864    467889999999999997  6799999999999999998764     34555678889999


Q ss_pred             EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578          144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA  223 (440)
Q Consensus       144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  223 (440)
                      ++|+  +..+++++.+   ..+.+|+.........                ...+...+..       +.  .++. +++
T Consensus       205 ~~~~--~~~l~s~s~d---g~i~~wd~~~~~~~~~----------------~~~~~~~v~~-------~~--~~~~-~l~  253 (445)
T 2ovr_B          205 MHLH--EKRVVSGSRD---ATLRVWDIETGQCLHV----------------LMGHVAAVRC-------VQ--YDGR-RVV  253 (445)
T ss_dssp             EEEE--TTEEEEEETT---SEEEEEESSSCCEEEE----------------EECCSSCEEE-------EE--ECSS-CEE
T ss_pred             EEec--CCEEEEEeCC---CEEEEEECCCCcEEEE----------------EcCCcccEEE-------EE--ECCC-EEE
Confidence            9995  5678888877   5677776554311100                0111111111       11  1455 899


Q ss_pred             EeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578          224 SCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT  303 (440)
Q Consensus       224 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~  303 (440)
                      +++.|+.|++||+.+++.+..+..|...+.++.|  +++++++|+.||.|++||++.++        .+..+.+|...+.
T Consensus       254 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~v~  323 (445)
T 2ovr_B          254 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN--------CIHTLTGHQSLTS  323 (445)
T ss_dssp             EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC--------EEEEECCCCSCEE
T ss_pred             EEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC--------EEEEEcCCcccEE
Confidence            9999999999999999999999999999999998  88999999999999999997665        6777889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEE
Q 013578          304 WLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLS  382 (440)
Q Consensus       304 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d  382 (440)
                      ++.+  ++.+|++++.||.|++||++++..+..           ......+...|.+++|+  +.+|++|+ ||.|++||
T Consensus       324 ~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          324 GMEL--KDNILVSGNADSTVKIWDIKTGQCLQT-----------LQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             EEEE--ETTEEEEEETTSCEEEEETTTCCEEEE-----------ECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EEEE--eCCEEEEEeCCCeEEEEECCCCcEEEE-----------EccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence            9888  466999999999999999986643321           11122355678889995  57777765 89999999


Q ss_pred             cCCccchhhhh----ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe----EEEEeCCCC
Q 013578          383 VETGKVLDTAE----KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK----VKLWLAPSL  437 (440)
Q Consensus       383 ~~~~~~~~~~~----~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~----i~vw~~~~~  437 (440)
                      +.+++.+..+.    .+|.+.|++++|+|++        .+|++|+.||+    |.|||+...
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--------~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          389 LKTGEFIRNLVTLESGGSGGVVWRIRASNTK--------LVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             TTTCCEEEEEEECTTGGGTCEEEEEEECSSE--------EEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCCceeeeeeccccCCCCceEEEEEecCCE--------EEEEEcccCCCCccEEEEEECCCC
Confidence            99999877662    3688899999999998        89999999998    999999753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.7e-34  Score=252.12  Aligned_cols=268  Identities=13%  Similarity=0.149  Sum_probs=207.2

Q ss_pred             CCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcc-eeeEEecCCCCCC
Q 013578           66 HSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKS-FKFLRINLPPGGP  140 (440)
Q Consensus        66 ~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~-~~~~~~~~~~~~~  140 (440)
                      ...++++.|+.+++|..    ..+.+..|...|.+++|+|+|.+|++|+.|+.+++|++....... .........|...
T Consensus        77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~  156 (354)
T 2pbi_B           77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNY  156 (354)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSC
T ss_pred             CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCc
Confidence            34577788999999864    456778899999999999999999999999999999987542211 1122233467889


Q ss_pred             CceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC--CC
Q 013578          141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA--DG  218 (440)
Q Consensus       141 v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  218 (440)
                      |.+++|+|++..+++++.+   ..+.+|+........                ....|...+..       ..+.+  ++
T Consensus       157 v~~~~~~~~~~~l~t~s~D---~~v~lwd~~~~~~~~----------------~~~~h~~~v~~-------~~~~~~~~g  210 (354)
T 2pbi_B          157 LSACSFTNSDMQILTASGD---GTCALWDVESGQLLQ----------------SFHGHGADVLC-------LDLAPSETG  210 (354)
T ss_dssp             EEEEEECSSSSEEEEEETT---SEEEEEETTTCCEEE----------------EEECCSSCEEE-------EEECCCSSC
T ss_pred             EEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCeEEE----------------EEcCCCCCeEE-------EEEEeCCCC
Confidence            9999999999999999987   577788765432110                00111111111       11233  44


Q ss_pred             CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee--
Q 013578          219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK--  296 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--  296 (440)
                      . ++++|+.|+.|++||+++++++..+..|...|.+++|+|++++|++|+.|+.|++||++...        .+..+.  
T Consensus       211 ~-~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~--------~~~~~~~~  281 (354)
T 2pbi_B          211 N-TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR--------EVAIYSKE  281 (354)
T ss_dssp             C-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------EEEEECCT
T ss_pred             C-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--------EEEEEcCC
Confidence            5 89999999999999999999999999999999999999999999999999999999986543        233333  


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578          297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G  375 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~  375 (440)
                      .+...+.+++|+|++.+|++++.|++|++||+.++..+              ....+|...|.+++|+|+|++|++|+ |
T Consensus       282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~--------------~~l~~h~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV--------------SILFGHENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE--------------EEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE--------------EEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence            23457899999999999999999999999999865432              12236677899999999999999876 8


Q ss_pred             CEEEEEE
Q 013578          376 STLQWLS  382 (440)
Q Consensus       376 ~~i~i~d  382 (440)
                      +.|++|+
T Consensus       348 ~~v~vW~  354 (354)
T 2pbi_B          348 HTLRVWA  354 (354)
T ss_dssp             SEEEEEC
T ss_pred             CCEEecC
Confidence            9999995

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.4e-34  Score=261.16  Aligned_cols=276  Identities=16%  Similarity=0.287  Sum_probs=211.7

Q ss_pred             cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      ...+|...|.|+++  ++++|++|+.||+|++||+.+++     ......+|...|.+++|  +++.+++++.+   ..+
T Consensus       128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~--~~~~l~sg~~d---g~i  195 (435)
T 1p22_A          128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----CKRILTGHTGSVLCLQY--DERVIITGSSD---STV  195 (435)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----EEEEECCCSSCEEEEEC--CSSEEEEEETT---SCE
T ss_pred             cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-----EEEEEcCCCCcEEEEEE--CCCEEEEEcCC---CeE
Confidence            34467788999988  79999999999999999998764     34556678899999999  78899998877   467


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee---
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL---  242 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~---  242 (440)
                      .+|+.........                ...+...+..       +.+  ++. .+++++.|+.|++||+.+++..   
T Consensus       196 ~vwd~~~~~~~~~----------------~~~h~~~v~~-------l~~--~~~-~l~s~s~dg~i~vwd~~~~~~~~~~  249 (435)
T 1p22_A          196 RVWDVNTGEMLNT----------------LIHHCEAVLH-------LRF--NNG-MMVTCSKDRSIAVWDMASPTDITLR  249 (435)
T ss_dssp             EEEESSSCCEEEE----------------ECCCCSCEEE-------EEC--CTT-EEEEEETTSCEEEEECSSSSCCEEE
T ss_pred             EEEECCCCcEEEE----------------EcCCCCcEEE-------EEE--cCC-EEEEeeCCCcEEEEeCCCCCCceee
Confidence            7776554321100                0111111111       111  233 8999999999999999988765   


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~  322 (440)
                      ..+..|...+.++++  ++++|++|+.||.|++||++.+.        .+..+.+|...|.+++|  ++.+|++|+.||.
T Consensus       250 ~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~  317 (435)
T 1p22_A          250 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE--------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNT  317 (435)
T ss_dssp             EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC--------EEEEEECCSSCEEEEEE--ETTEEEEEETTSC
T ss_pred             eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc--------EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence            667788889999988  78999999999999999987655        67788899999999999  4679999999999


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc---------chhhh
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK---------VLDTA  392 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~---------~~~~~  392 (440)
                      |++||++++..+.              ...+|...|.+++|  ++.+|++|+ ||.|++||+.+++         .+..+
T Consensus       318 i~iwd~~~~~~~~--------------~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  381 (435)
T 1p22_A          318 IRLWDIECGACLR--------------VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL  381 (435)
T ss_dssp             EEEEETTTCCEEE--------------EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred             EEEEECCCCCEEE--------------EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec
Confidence            9999998764431              12345666888888  778888765 8999999998776         55556


Q ss_pred             hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          393 EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       393 ~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                       .+|.+.|++++|  ++        .+|++|+.||.|++||+.+.+
T Consensus       382 -~~h~~~v~~l~~--~~--------~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          382 -VEHSGRVFRLQF--DE--------FQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             -CCCSSCCCCEEE--CS--------SCEEECCSSSEEEEEC-----
T ss_pred             -cCCCCCeEEEEe--CC--------CEEEEEeCCCEEEEEECCCCC
Confidence             589999999999  44        689999999999999997654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.3e-34  Score=261.25  Aligned_cols=258  Identities=16%  Similarity=0.226  Sum_probs=202.9

Q ss_pred             cccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCc-----ceeeEEecCCCCCCCceEEEccCCCeEEEEe
Q 013578           84 VNTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSK-----SFKFLRINLPPGGPPTAVAFADNATSIVVAT  157 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~-----~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  157 (440)
                      ...+.+|.+.|++++|+|+ +.+|++++.||.|++|++......     ..........|...+.+++|+|++..     
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-----  195 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-----  195 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-----
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-----
Confidence            4556789999999999997 789999999999999999762110     01123344467788899999886541     


Q ss_pred             ecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC
Q 013578          158 HNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK  237 (440)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~  237 (440)
                                                                                     +|++|+.||.|++||+.
T Consensus       196 ---------------------------------------------------------------~l~s~~~dg~i~vwd~~  212 (430)
T 2xyi_A          196 ---------------------------------------------------------------YLLSASDDHTICLWDIN  212 (430)
T ss_dssp             ---------------------------------------------------------------EEEEECTTSCEEEEETT
T ss_pred             ---------------------------------------------------------------eEEEEeCCCeEEEEeCC
Confidence                                                                           67888899999999998


Q ss_pred             CCce-------eeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578          238 TGKL-------LGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP  309 (440)
Q Consensus       238 ~~~~-------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  309 (440)
                      ++..       ...+..|...|.+++|+| ++.+|++++.||.|++||++.....     .....+..|...|++++|+|
T Consensus       213 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~v~~i~~~p  287 (430)
T 2xyi_A          213 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-----KPSHTVDAHTAEVNCLSFNP  287 (430)
T ss_dssp             SCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-----SCSEEEECCSSCEEEEEECS
T ss_pred             CCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-----cceeEeecCCCCeEEEEeCC
Confidence            7432       355667888999999999 7889999999999999999765211     14556678999999999999


Q ss_pred             CCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEe-cCCEEEEEEcCCc
Q 013578          310 NSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAAT-HGSTLQWLSVETG  386 (440)
Q Consensus       310 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~-~~~~i~i~d~~~~  386 (440)
                      ++. +|++|+.||.|++||++....             +......|...|.+++|+|+++ +|+++ .|+.|++||+...
T Consensus       288 ~~~~~l~tg~~dg~v~vwd~~~~~~-------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          288 YSEFILATGSADKTVALWDLRNLKL-------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             SCTTEEEEEETTSEEEEEETTCTTS-------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCCC-------------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            987 688999999999999985321             1112224566799999999996 46665 5899999999872


Q ss_pred             --------------cchhhhhccccCCeEEEEecCCCCCCCCCcce-EEEEeeCCCeEEEEeCCC
Q 013578          387 --------------KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS-VLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       387 --------------~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw~~~~  436 (440)
                                    +.+..+ .+|...|++++|+|++        . +|++++.||.|+||++..
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~--------~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNE--------PWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEEC-CCCSSCEEEEEECSSS--------TTEEEEEETTSEEEEEEECH
T ss_pred             ccccCccccccCCcceEEEc-CCCCCCceEEEECCCC--------CCEEEEEECCCCEEEeEccc
Confidence                          334444 5789999999999998        6 899999999999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-34  Score=283.02  Aligned_cols=353  Identities=9%  Similarity=0.068  Sum_probs=227.5

Q ss_pred             CCCCCCCCCCcccCcccc---------------ccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceee
Q 013578           67 SHSHGDKDQNKRHHPLDV---------------NTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKF  130 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~---------------~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~  130 (440)
                      ..+.+..++.++.|+..-               ..+.+|.+.|++++|+|+ +..|++|+.||+| +||+.++...  ..
T Consensus       112 ~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~--~~  188 (902)
T 2oaj_A          112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK--QS  188 (902)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE--EE
T ss_pred             EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE--EE
Confidence            345566778888776531               346789999999999996 5799999999999 9999875421  11


Q ss_pred             EEec---------------CCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccccc--c-----ccc------
Q 013578          131 LRIN---------------LPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNE--G-----KQQ------  182 (440)
Q Consensus       131 ~~~~---------------~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~------  182 (440)
                      +...               ..|...|.+++|+|++++|++++.|   ..+.+|+.........  .     ...      
T Consensus       189 ~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D---g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~  265 (902)
T 2oaj_A          189 FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED---NSLVFWDANSGHMIMARTVFETEINVPQPDYIR  265 (902)
T ss_dssp             ECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT---CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred             EecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence            1110               1234679999999999999999988   4677777644321110  0     000      


Q ss_pred             ----CCCCCCceeecccc----------c-c-------cceeEE-E------------------------ee----c--c
Q 013578          183 ----SKLPGPEIKWEHHK----------V-H-------DKRAIL-T------------------------LF----G--A  209 (440)
Q Consensus       183 ----~~~~~~~~~~~~~~----------~-~-------~~~~~~-~------------------------~~----~--~  209 (440)
                          .........|....          . .       ...... .                        ..    .  .
T Consensus       266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v  345 (902)
T 2oaj_A          266 DSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPI  345 (902)
T ss_dssp             CCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCE
T ss_pred             CCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCce
Confidence                00000112231100          0 0       000000 0                        00    0  0


Q ss_pred             cccccC----------CCCCeEEEEeeCCceEEEEeCCCCceeee-----------------------------------
Q 013578          210 SATYGT----------ADGSTIIASCSEGTDISIWHGKTGKLLGN-----------------------------------  244 (440)
Q Consensus       210 ~~~~~~----------~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-----------------------------------  244 (440)
                      ....+.          .+.. .+++++.|+.|++||+.++.....                                   
T Consensus       346 ~~~~~~~~~sp~~~g~~d~~-~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~  424 (902)
T 2oaj_A          346 VNILPIPRQSPYFAGCHNPG-LILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA  424 (902)
T ss_dssp             EEEEECCSSCSHHHHTBSCS-EEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT
T ss_pred             EEEEECCCCCCCcCCCCCce-eEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc
Confidence            000111          1223 677888899999999977753321                                   


Q ss_pred             ------eeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-----eccccceEEEEEcCCCCE
Q 013578          245 ------VDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-----KGHKSAVTWLCFAPNSEQ  313 (440)
Q Consensus       245 ------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~  313 (440)
                            +.+|...+..++|+|++++|++|+.|++|++||+..+........  ...+     .+|...|.+++|+|++++
T Consensus       425 ~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~--~~~l~~~~~~~h~~~V~svafspdg~~  502 (902)
T 2oaj_A          425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASF--EVNLSRTLNKAKELAVDKISFAAETLE  502 (902)
T ss_dssp             BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCE--EEEHHHHTTCSSSCCEEEEEEETTTTE
T ss_pred             cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceE--EeechhhcCCCCCCceeEEEecCCCCe
Confidence                  123334455567789999999999999999999876531100000  0112     278999999999999999


Q ss_pred             EEEEeCCCcEEEEecCccccccC--------------------CCCc-----------cccccccccCCCCCeeeeeeEE
Q 013578          314 IITASKDGTLRVWNINVRYHLDE--------------------DPKT-----------LKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       314 l~s~~~dg~i~iwd~~~~~~~~~--------------------~~~~-----------~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                      ||+|+.||+|+|||+.++.....                    .+..           ...--.+.....+|...|++++
T Consensus       503 LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sva  582 (902)
T 2oaj_A          503 LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAIN  582 (902)
T ss_dssp             EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEE
T ss_pred             EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEE
Confidence            99999999999999987632100                    0000           0000001223345778899999


Q ss_pred             eCCCCCEEEEec-CCEEEEEEcCCccchh-----hhhccccCCeEEEEec-----CCCCCCCCCcceEEEEeeCCCeEEE
Q 013578          363 LSSDGKILAATH-GSTLQWLSVETGKVLD-----TAEKAHEGEITCMAWA-----PKTIPMGNQQVSVLATSSVDKKVKL  431 (440)
Q Consensus       363 ~s~~g~~l~~~~-~~~i~i~d~~~~~~~~-----~~~~~h~~~v~~v~~~-----~~~~~~~~~~~~~l~t~~~Dg~i~v  431 (440)
                      ||||| +||+|+ |+.|++||++++..+.     .+..+|.+.|++++|+     ||+     ..+.+|++|+.|++|++
T Consensus       583 fSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg-----~~~~~l~sgs~D~tv~~  656 (902)
T 2oaj_A          583 NSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG-----YSSILMVCGTDMGEVIT  656 (902)
T ss_dssp             ECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS-----SEEEEEEEEETTSEEEE
T ss_pred             ecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCC-----CcceEEEEEecCCcEEE
Confidence            99999 999876 8999999998876543     2212799999999999     874     22279999999999999


Q ss_pred             EeC
Q 013578          432 WLA  434 (440)
Q Consensus       432 w~~  434 (440)
                      |++
T Consensus       657 wd~  659 (902)
T 2oaj_A          657 YKI  659 (902)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-34  Score=256.57  Aligned_cols=273  Identities=11%  Similarity=0.068  Sum_probs=201.2

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY  168 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~  168 (440)
                      .-...|.+++|+|||+++||++.|++|+  |.....        ...+|...|.+++|+|+|.          ...+.+|
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--------~l~gh~~~v~~V~FsPdg~----------~~~~~~~   72 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--------DINCNSKNLFHVKEFPLEF----------ENKLDFE   72 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--------CCSSBGGGTEEEEEECCCC----------CCTTTTS
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccc--------eecCCCccEEEEEECCCCC----------cceEEEE
Confidence            3468899999999999999999999999  644332        1247889999999999981          1222233


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN  248 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  248 (440)
                      ....... .               .  ..+.       .....+.++|+|. .+++++.||.|++||.+.  ++..+. |
T Consensus        73 ~~~~~~~-~---------------~--~~~~-------~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~-~  123 (588)
T 2j04_A           73 LAQQNGL-L---------------N--SQPV-------CYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLD-S  123 (588)
T ss_dssp             CCCSSCS-S---------------T--TSCS-------CCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECC-C
T ss_pred             eCCCceE-e---------------e--cCCC-------CcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeecc-C
Confidence            2211100 0               0  0011       1223345589999 999999999999999654  666666 5


Q ss_pred             CC-----cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee----eccccceEEEEEcCCCCEEEEEeC
Q 013578          249 QL-----KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL----KGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       249 ~~-----~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      ..     .+.+++|||||++|++|+.||+|++||+..+..... .+-.+..+    .+|..+|.+++|+|+|  +++++.
T Consensus       124 ~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~-~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~  200 (588)
T 2j04_A          124 KGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP-EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS  200 (588)
T ss_dssp             SSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC-CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET
T ss_pred             CCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc-cceeeeeeecccccccccEEEEEEcCCc--EEEEeC
Confidence            54     499999999999999999999999999876431000 00123444    6788999999999999  888999


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCC
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGE  399 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~  399 (440)
                      |++|++||+..+....    ....+      ..+|...|.+++|+  |..||+++++.|++||..+++..... .+|.+.
T Consensus       201 D~tVrlWd~~~~~~~~----~~~tL------~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~-~gh~~~  267 (588)
T 2j04_A          201 NNSVFSMTVSASSHQP----VSRMI------QNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLK-TGSLEN  267 (588)
T ss_dssp             TCCEEEECCCSSSSCC----CEEEE------ECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEE-CSCCSC
T ss_pred             CCeEEEEECCCCcccc----ceeee------cccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEE-cCCCce
Confidence            9999999998653210    00000      02445668999999  68999888999999999988874333 379999


Q ss_pred             eEEEEe--cCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          400 ITCMAW--APKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       400 v~~v~~--~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      |.+++|  +|++        ..|+++++||+ ++|..+
T Consensus       268 V~~va~~~s~d~--------~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          268 FHIIPLNHEKES--------TILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CCEEEETTCSSC--------EEEEECSSCEE-EEEESS
T ss_pred             EEEEEeeeCCCC--------CEEEEEcCCCC-EEEeec
Confidence            999999  9998        89999999999 999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.9e-33  Score=241.86  Aligned_cols=252  Identities=19%  Similarity=0.320  Sum_probs=199.0

Q ss_pred             eEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecc
Q 013578          130 FLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGA  209 (440)
Q Consensus       130 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (440)
                      ......+|...|.+++|+|+++++++++.+   ..+.+|+........                ....|...       .
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~~~----------------~~~~h~~~-------v   68 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEK----------------TISGHKLG-------I   68 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTCCEEE----------------EECCCSSC-------E
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcccch----------------hhccCCCc-------e
Confidence            344556888999999999999999999877   456677654321100                00111111       2


Q ss_pred             cccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578          210 SATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV  289 (440)
Q Consensus       210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  289 (440)
                      ..+.++|+++ +|++++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++|+.|+.|++||++.++       
T Consensus        69 ~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------  140 (312)
T 4ery_A           69 SDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------  140 (312)
T ss_dssp             EEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-------
T ss_pred             EEEEEcCCCC-EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-------
Confidence            2334578887 99999999999999999999999999999999999999999999999999999999997654       


Q ss_pred             eeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE
Q 013578          290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI  369 (440)
Q Consensus       290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  369 (440)
                       .+..+..|..+|.+++|+|++.+|++++.|+.|++||++++..+..             ....+...+..++|+|++++
T Consensus       141 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~  206 (312)
T 4ery_A          141 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT-------------LIDDDNPPVSFVKFSPNGKY  206 (312)
T ss_dssp             -EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------------ECCSSCCCEEEEEECTTSSE
T ss_pred             -EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE-------------EeccCCCceEEEEECCCCCE
Confidence             5677888999999999999999999999999999999986643311             01123345788999999999


Q ss_pred             EEEec-CCEEEEEEcCCccchhhhhccccCCeEE--EEec-CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          370 LAATH-GSTLQWLSVETGKVLDTAEKAHEGEITC--MAWA-PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       370 l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~--v~~~-~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      |++++ |+.|++||+.+++.+..+ .+|...+.+  ..|+ +++        .+|++|+.||.|++||+.+++
T Consensus       207 l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~l~sg~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          207 ILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG--------KWIVSGSEDNLVYIWNLQTKE  270 (312)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEE-CSSCCSSSCCCEEEECSSS--------CEEEECCTTSCEEEEETTTCC
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEE-EecCCceEEEEEEEEeCCC--------cEEEEECCCCEEEEEECCCch
Confidence            98865 899999999999988877 467654433  2343 455        799999999999999998765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5e-33  Score=240.54  Aligned_cols=235  Identities=18%  Similarity=0.225  Sum_probs=183.3

Q ss_pred             CCCCCCCCCCcccCcc------ccccccccCcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578           67 SHSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG  138 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~  138 (440)
                      ..++++.|+.+++|..      .+.+|.+|.++|++++|++  +|++|+||+.||+|+|||+.++...   .......|.
T Consensus        23 ~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~---~~~~~~~h~   99 (297)
T 2pm7_B           23 RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS---QIAVHAVHS   99 (297)
T ss_dssp             EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC---CCEEECCCS
T ss_pred             EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE---EEEEeecCC
Confidence            3567778888888754      4678999999999999986  4899999999999999999865422   223345677


Q ss_pred             CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      ..|.+++|+|+..                                                                  +
T Consensus       100 ~~v~~v~~~p~~~------------------------------------------------------------------g  113 (297)
T 2pm7_B          100 ASVNSVQWAPHEY------------------------------------------------------------------G  113 (297)
T ss_dssp             SCEEEEEECCGGG------------------------------------------------------------------C
T ss_pred             CceeEEEeCcCCC------------------------------------------------------------------C
Confidence            8899999988610                                                                  1


Q ss_pred             CeEEEEeeCCceEEEEeCCCCce--eeeeeCCCCcccEEEecCC-------------CCeEEEEecCCCEEEEEeEecCC
Q 013578          219 STIIASCSEGTDISIWHGKTGKL--LGNVDTNQLKNNMAAISPN-------------GRFLAAAAFTADVKVWEIVYSKD  283 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~-------------~~~l~~~~~dg~i~i~d~~~~~~  283 (440)
                      . +|++++.|+.|++||++++..  ...+..|...+.+++|+|+             +++|++|+.|+.|++||++... 
T Consensus       114 ~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~-  191 (297)
T 2pm7_B          114 P-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-  191 (297)
T ss_dssp             S-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT-
T ss_pred             c-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC-
Confidence            1 788899999999999987632  3566788899999999997             5799999999999999997654 


Q ss_pred             CceeeeeeeeeeeccccceEEEEEcCCC---CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeee
Q 013578          284 GLVKAVTSVMQLKGHKSAVTWLCFAPNS---EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR  360 (440)
Q Consensus       284 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  360 (440)
                         ........+.+|...|.+++|+|++   .+|++++.|++|++||++.....    ...     .......+...|.+
T Consensus       192 ---~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~----~~~-----~~~~~~~~~~~v~~  259 (297)
T 2pm7_B          192 ---QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP----WKK-----TLLKEEKFPDVLWR  259 (297)
T ss_dssp             ---TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC----CEE-----EESSSSCCSSCEEE
T ss_pred             ---ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc----cce-----eeeecccCCCcEEE
Confidence               2223456788999999999999985   78999999999999999753210    000     01111244566899


Q ss_pred             EEeCCCCCEEEEec-CCEEEEEEcC
Q 013578          361 LSLSSDGKILAATH-GSTLQWLSVE  384 (440)
Q Consensus       361 ~~~s~~g~~l~~~~-~~~i~i~d~~  384 (440)
                      ++|+|+|++|++++ |+.|++|+..
T Consensus       260 ~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          260 ASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEECCCCCEEEEEcCCCcEEEEEEC
Confidence            99999999999865 8999999976

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.2e-33  Score=274.52  Aligned_cols=308  Identities=15%  Similarity=0.158  Sum_probs=234.6

Q ss_pred             CCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578           68 HSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA  143 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~  143 (440)
                      .+.+..++.+++|..    .+..+.+|.+.|++++|+|++++|++|+.||.|++||+.++.     .......|...|.+
T Consensus        28 la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~v~~  102 (814)
T 3mkq_A           28 VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----KVVDFEAHPDYIRS  102 (814)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEE
T ss_pred             EEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEecCCCCEEE
Confidence            345556677777764    467888999999999999999999999999999999998765     33444568899999


Q ss_pred             EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578          144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA  223 (440)
Q Consensus       144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  223 (440)
                      ++|+|+++++++++.+   ..+.+|+.......               ......+...       ...+.++|++...++
T Consensus       103 ~~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~---------------~~~~~~~~~~-------v~~~~~~p~~~~~l~  157 (814)
T 3mkq_A          103 IAVHPTKPYVLSGSDD---LTVKLWNWENNWAL---------------EQTFEGHEHF-------VMCVAFNPKDPSTFA  157 (814)
T ss_dssp             EEECSSSSEEEEEETT---SEEEEEEGGGTSEE---------------EEEEECCSSC-------EEEEEEETTEEEEEE
T ss_pred             EEEeCCCCEEEEEcCC---CEEEEEECCCCceE---------------EEEEcCCCCc-------EEEEEEEcCCCCEEE
Confidence            9999999999998876   46667765432100               0000111111       122334663333899


Q ss_pred             EeeCCceEEEEeCCCCceeeeeeCCC-CcccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          224 SCSEGTDISIWHGKTGKLLGNVDTNQ-LKNNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       224 s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      +++.|+.|++||+.+++....+..+. ..+.+++|+|  ++.+|++++.||.|++||+..+.        .+..+.+|..
T Consensus       158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--------~~~~~~~~~~  229 (814)
T 3mkq_A          158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS--------CVATLEGHMS  229 (814)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE--------EEEEEECCSS
T ss_pred             EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--------EEEEEcCCCC
Confidence            99999999999999888777776554 7899999999  99999999999999999986554        5777888999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC--EEEEecCCEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK--ILAATHGSTL  378 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~i  378 (440)
                      .|.+++|+|++.+|++++.||.|++||+.++....              ....+...+.+++|+|+|.  +++++.++.+
T Consensus       230 ~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  295 (814)
T 3mkq_A          230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK--------------TLNVGLERSWCIATHPTGRKNYIASGFDNGF  295 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE--------------EECCSSSSEEEEEECTTCGGGEEEEEETTEE
T ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--------------EeecCCCcEEEEEEccCCCceEEEEEeCCCE
Confidence            99999999999999999999999999998654321              1123344688999999998  6888889999


Q ss_pred             EEEEcCCccchhhh------------------------------------------hccccCCeEEEEecCCCCCCCCCc
Q 013578          379 QWLSVETGKVLDTA------------------------------------------EKAHEGEITCMAWAPKTIPMGNQQ  416 (440)
Q Consensus       379 ~i~d~~~~~~~~~~------------------------------------------~~~h~~~v~~v~~~~~~~~~~~~~  416 (440)
                      .+|++..+.....+                                          ...|...+.+++|+|++       
T Consensus       296 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-------  368 (814)
T 3mkq_A          296 TVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG-------  368 (814)
T ss_dssp             EEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS-------
T ss_pred             EEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCC-------
Confidence            99987643221111                                          02244568899999998       


Q ss_pred             ceEEEEeeCCCeEEEEeCCC
Q 013578          417 VSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       417 ~~~l~t~~~Dg~i~vw~~~~  436 (440)
                       ++|++++ ||.+.+|++..
T Consensus       369 -~~la~~~-~~~~~i~~~~~  386 (814)
T 3mkq_A          369 -RFVTVVG-DGEYVIYTALA  386 (814)
T ss_dssp             -SEEEEEE-TTEEEEEETTT
T ss_pred             -CEEEEec-CCEEEEEECcc
Confidence             7888887 89999999754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.7e-33  Score=245.58  Aligned_cols=276  Identities=20%  Similarity=0.309  Sum_probs=204.8

Q ss_pred             CCCCCCCCCCcccCcc---------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578           67 SHSHGDKDQNKRHHPL---------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP  137 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~---------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~  137 (440)
                      ..++++.|+.+++|..         +.+.+.+|.+.|.+++|+|+|++|++|+.|+.|++|+.....     .......+
T Consensus        53 ~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~-----~~~~~~~~  127 (340)
T 4aow_A           53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT-----TTRRFVGH  127 (340)
T ss_dssp             EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEECC
T ss_pred             EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccc-----eeeeecCC
Confidence            4567788898988864         356789999999999999999999999999999999988654     23334455


Q ss_pred             CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578          138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD  217 (440)
Q Consensus       138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (440)
                      ...+..+.+++++..+++++.+   ..+.+|+.........               ....+.......       .+.++
T Consensus       128 ~~~~~~~~~~~~~~~l~s~s~d---~~~~~~d~~~~~~~~~---------------~~~~~~~~v~~~-------~~~~~  182 (340)
T 4aow_A          128 TKDVLSVAFSSDNRQIVSGSRD---KTIKLWNTLGVCKYTV---------------QDESHSEWVSCV-------RFSPN  182 (340)
T ss_dssp             SSCEEEEEECTTSSCEEEEETT---SCEEEECTTSCEEEEE---------------CSSSCSSCEEEE-------EECSC
T ss_pred             CCceeEEEEeecCccceeecCC---CeEEEEEeCCCceEEE---------------EeccccCcccce-------EEccC
Confidence            6778889999999999999877   4566666543211100               001111111111       11222


Q ss_pred             C-CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          218 G-STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       218 ~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      + ..++++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++|+.||.|++||++...        .+..+.
T Consensus       183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--------~~~~~~  254 (340)
T 4aow_A          183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--------HLYTLD  254 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--------EEEEEE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc--------eeeeec
Confidence            2 2378899999999999999999999999999999999999999999999999999999986554        455555


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578          297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G  375 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~  375 (440)
                       +...|.++.|+|++. +++++.|+.|++||+++..........     .......++...|.+++|+|+|++|++|+ |
T Consensus       255 -~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  327 (340)
T 4aow_A          255 -GGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQE-----VISTSSKAEPPQCTSLAWSADGQTLFAGYTD  327 (340)
T ss_dssp             -CSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC------------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred             -CCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEecccc-----ceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence             456899999999876 556667999999999876543221111     11223346677899999999999999875 8


Q ss_pred             CEEEEEEcCCcc
Q 013578          376 STLQWLSVETGK  387 (440)
Q Consensus       376 ~~i~i~d~~~~~  387 (440)
                      |.|++||+++|+
T Consensus       328 g~v~iW~~~tGt  339 (340)
T 4aow_A          328 NLVRVWQVTIGT  339 (340)
T ss_dssp             SCEEEEEEEC--
T ss_pred             CEEEEEeCCCcC
Confidence            999999999986

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7e-33  Score=254.51  Aligned_cols=286  Identities=11%  Similarity=0.170  Sum_probs=195.4

Q ss_pred             CCCCCCCCCCCcccCccc---------------cccccccC------------cceeEEEEccCC--CEEEEeeCCCcEE
Q 013578           66 HSHSHGDKDQNKRHHPLD---------------VNTLKGHG------------DSVTGLCFSSDG--KCLATACADGVIR  116 (440)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~---------------~~~l~~H~------------~~V~~l~~s~dg--~~l~t~s~dg~v~  116 (440)
                      ...+++..++.+++|...               +..+.+|.            +.|++++|+|++  .+|++++.||+|+
T Consensus        41 ~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~  120 (447)
T 3dw8_B           41 ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIK  120 (447)
T ss_dssp             SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEE
T ss_pred             CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEE
Confidence            345666777878777643               66788998            889999999998  8999999999999


Q ss_pred             EEecCCCCCccee-----------------------------------eEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578          117 VHKLDDASSKSFK-----------------------------------FLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus       117 vW~~~~~~~~~~~-----------------------------------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      +|++.........                                   .......|...|.+++                
T Consensus       121 iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~----------------  184 (447)
T 3dw8_B          121 LWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS----------------  184 (447)
T ss_dssp             EEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE----------------
T ss_pred             EEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE----------------
Confidence            9998753321000                                   0000112222233333                


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cc
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GK  240 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~  240 (440)
                                                                          ++++++ +++++ .|+.|++||+.+ ++
T Consensus       185 ----------------------------------------------------~~~~~~-~l~s~-~d~~i~iwd~~~~~~  210 (447)
T 3dw8_B          185 ----------------------------------------------------INSDYE-TYLSA-DDLRINLWHLEITDR  210 (447)
T ss_dssp             ----------------------------------------------------ECTTSS-EEEEE-CSSEEEEEETTEEEE
T ss_pred             ----------------------------------------------------EcCCCC-EEEEe-CCCeEEEEECCCCCc
Confidence                                                                355555 77777 799999999984 34


Q ss_pred             eee-------eeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc------------
Q 013578          241 LLG-------NVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS------------  300 (440)
Q Consensus       241 ~~~-------~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~------------  300 (440)
                      .+.       .+..|...|.+++|+|++ ++|++|+.||.|++||++.....    ......+.+|..            
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  286 (447)
T 3dw8_B          211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC----DRHSKLFEEPEDPSNRSFFSEIIS  286 (447)
T ss_dssp             EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS----CTTCEEECCC-----CCHHHHHTT
T ss_pred             eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc----cceeeEeccCCCccccccccccCc
Confidence            443       355788899999999998 99999999999999999765410    001455666665            


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCc-cccccCCCCccccccc-cccCCCCCeeeeeeEEeCCCCCEEEEec-CCE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINV-RYHLDEDPKTLKVLPI-PLLDSNGATLQYDRLSLSSDGKILAATH-GST  377 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~  377 (440)
                      .|.+++|+|++++|++++. +.|++||++. +..+............ ...........+..++|+|++++|++|+ |+.
T Consensus       287 ~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~  365 (447)
T 3dw8_B          287 SISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF  365 (447)
T ss_dssp             CEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred             eEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence            8999999999999999998 9999999986 3322111000000000 0000000001133599999999999876 899


Q ss_pred             EEEEEcCCccchhhh-------------------------------hccccCCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578          378 LQWLSVETGKVLDTA-------------------------------EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD  426 (440)
Q Consensus       378 i~i~d~~~~~~~~~~-------------------------------~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D  426 (440)
                      |++||+.+++.+...                               ...+...|.+++|+|++        .+|++++.|
T Consensus       366 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--------~~la~~~~~  437 (447)
T 3dw8_B          366 FRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKE--------NIIAVATTN  437 (447)
T ss_dssp             EEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSS--------SEEEEECSS
T ss_pred             EEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCC--------CEEEEEecc
Confidence            999999988764310                               01245679999999998        899998877


Q ss_pred             CeEEEEeCC
Q 013578          427 KKVKLWLAP  435 (440)
Q Consensus       427 g~i~vw~~~  435 (440)
                      + +++|...
T Consensus       438 ~-~~~~~~~  445 (447)
T 3dw8_B          438 N-LYIFQDK  445 (447)
T ss_dssp             C-EEEEECC
T ss_pred             e-eeeeccc
Confidence            6 7777643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-32  Score=266.23  Aligned_cols=281  Identities=19%  Similarity=0.270  Sum_probs=206.9

Q ss_pred             CCCCCCCCCCCcccCcc---------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC
Q 013578           66 HSHSHGDKDQNKRHHPL---------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP  136 (440)
Q Consensus        66 ~~~~~~~~~~~~~~~~~---------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~  136 (440)
                      ....+++.|+.+++|..         ..+.+.+|.+.|.+++|+|+|++|+||+.||+|+|||+.++.     .......
T Consensus       396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~-----~~~~~~~  470 (694)
T 3dm0_A          396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV-----STRRFVG  470 (694)
T ss_dssp             SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEEC
T ss_pred             CEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc-----ceeEEeC
Confidence            34567888898988854         245788999999999999999999999999999999998764     3445567


Q ss_pred             CCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578          137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA  216 (440)
Q Consensus       137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (440)
                      |...|.+++|+|+++.+++++.|   ..+.+|+.........             ......|...+       .++.+++
T Consensus       471 h~~~v~~~~~s~~~~~l~s~s~D---~~i~iwd~~~~~~~~~-------------~~~~~~h~~~v-------~~~~~~~  527 (694)
T 3dm0_A          471 HTKDVLSVAFSLDNRQIVSASRD---RTIKLWNTLGECKYTI-------------SEGGEGHRDWV-------SCVRFSP  527 (694)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETT---SCEEEECTTSCEEEEE-------------CSSTTSCSSCE-------EEEEECS
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCC---CEEEEEECCCCcceee-------------ccCCCCCCCcE-------EEEEEeC
Confidence            88999999999999999999987   5677777532211000             00001111111       1223356


Q ss_pred             CC-CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578          217 DG-STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       217 ~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      ++ ...+++++.|++|++||+.+++....+..|...|.+++|+|++++|++|+.||.|++||++.++        .+..+
T Consensus       528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~--------~~~~~  599 (694)
T 3dm0_A          528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--------KLYSL  599 (694)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE--------EEECC
T ss_pred             CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--------eEEEe
Confidence            55 2389999999999999999999999999999999999999999999999999999999997654        44444


Q ss_pred             eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc-----ccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          296 KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP-----IPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       296 ~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                      . +...|.+++|+|++.+|++++ |+.|++||++++..+...........     ........+...+++++|+|+|++|
T Consensus       600 ~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l  677 (694)
T 3dm0_A          600 E-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL  677 (694)
T ss_dssp             B-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred             c-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence            4 456899999999998777765 56799999997765432111100000     0000111222347889999999999


Q ss_pred             EEec-CCEEEEEEcC
Q 013578          371 AATH-GSTLQWLSVE  384 (440)
Q Consensus       371 ~~~~-~~~i~i~d~~  384 (440)
                      ++|+ ||.|++|++.
T Consensus       678 ~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          678 FSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEEcCCCeEEEEecc
Confidence            9876 9999999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.9e-32  Score=241.66  Aligned_cols=293  Identities=14%  Similarity=0.155  Sum_probs=195.6

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ++..+.+|.+.|++++|+|||++|++|+.|+ ++||++......    ...   +...+..+++.++++.+++++...  
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~d--   80 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI----MSQ---EMRHLSKVRMLHRTNYVAFVTGVK--   80 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE----EEE---ECSCCCEEEECTTSSEEEEECSST--
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee----eee---ecCCeEEEEEcCCCCEEEEEECCc--
Confidence            3556789999999999999999999998776 789998754321    111   113588899999999887665442  


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-ce
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KL  241 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~  241 (440)
                      ..+.+|+...........                 +...+       ..+.++++   .++.+ .++.|++||+.++ +.
T Consensus        81 ~~v~iWd~~~~~~~~~~~-----------------~~~~v-------~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~  132 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVSRIK-----------------VDAPV-------KDLFLSRE---FIVVS-YGDVISVFKFGNPWKR  132 (355)
T ss_dssp             TEEEEEETTTTEEEEEEE-----------------CSSCE-------EEEEECSS---EEEEE-ETTEEEEEESSTTCCB
T ss_pred             cEEEEEECCCCcEEEEEE-----------------CCCce-------EEEEEcCC---EEEEE-EcCEEEEEECCCCcee
Confidence            477888765442111100                 00001       11112232   33333 3678999999988 67


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEE--EecCCCEEEEEeEecCCCce-------eeeee-eeeeeccccceEEEEEcCCC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAA--AAFTADVKVWEIVYSKDGLV-------KAVTS-VMQLKGHKSAVTWLCFAPNS  311 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~i~d~~~~~~~~~-------~~~~~-~~~~~~h~~~v~~~~~~p~~  311 (440)
                      +..+..   +...+++++  .++++  |+.||.|++||+..+.....       ....+ +..+.+|.+.|++++|+|++
T Consensus       133 ~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g  207 (355)
T 3vu4_A          133 ITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS  207 (355)
T ss_dssp             SSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred             eEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence            666654   344566777  56666  68899999999975431000       00112 67788999999999999999


Q ss_pred             CEEEEEeCCCc-EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccch
Q 013578          312 EQIITASKDGT-LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVL  389 (440)
Q Consensus       312 ~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~  389 (440)
                      ++|++++.|++ |++||++++.++..            .....|...|.+++|+|+|++|++++ |+.|++||+..+...
T Consensus       208 ~~l~s~s~d~~~v~iwd~~~~~~~~~------------~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~  275 (355)
T 3vu4_A          208 DMVATCSQDGTIIRVFKTEDGVLVRE------------FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDN  275 (355)
T ss_dssp             SEEEEEETTCSEEEEEETTTCCEEEE------------EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcEEEE------------EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCc
Confidence            99999999998 99999997654321            11112566799999999999999875 899999999765421


Q ss_pred             h--h--------------------hhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          390 D--T--------------------AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       390 ~--~--------------------~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .  .                    +...+......++|++++        .+|++++.||.+++|++..++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~--------~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          276 KRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES--------SLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS--------EEEEEETTTTEEEEEEEEEET
T ss_pred             ccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC--------CEEEEEeCCCeEEEEEEEcCC
Confidence            1  1                    111112234779999998        899999999999999987644

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-32  Score=248.87  Aligned_cols=293  Identities=15%  Similarity=0.143  Sum_probs=209.3

Q ss_pred             CCCCCCCCCCcccCcc----------ccccccccCcceeEEEEccC----C---CEEEEeeCCCcEEEEecCCCCCccee
Q 013578           67 SHSHGDKDQNKRHHPL----------DVNTLKGHGDSVTGLCFSSD----G---KCLATACADGVIRVHKLDDASSKSFK  129 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~----------~~~~l~~H~~~V~~l~~s~d----g---~~l~t~s~dg~v~vW~~~~~~~~~~~  129 (440)
                      ...++..++.+++|..          .+..+.+|...|.+++|+|+    |   ++|++++.||.|++|++.++......
T Consensus        28 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  107 (397)
T 1sq9_A           28 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV  107 (397)
T ss_dssp             EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCE
T ss_pred             eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccc
Confidence            3455666777766643          36678899999999999999    9   99999999999999999876642222


Q ss_pred             eEEecCCC-----CCCCceEEEc----cCCCe-EEEEeecCCcceEEeecccc------ccccccccccCCCCCCceeec
Q 013578          130 FLRINLPP-----GGPPTAVAFA----DNATS-IVVATHNLSGCSLYMYGEEK------AISTNEGKQQSKLPGPEIKWE  193 (440)
Q Consensus       130 ~~~~~~~~-----~~~v~~v~~~----~~~~~-l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  193 (440)
                      .......|     ...|.+++|+    |+++. +++++.+   ..+.+|+...      .....        ..+...+.
T Consensus       108 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~  176 (397)
T 1sq9_A          108 IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK---GTTYIWKFHPFADESNSLTLN--------WSPTLELQ  176 (397)
T ss_dssp             EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT---SCEEEEEEESSSSHHHHTTTC--------CCCEEEEE
T ss_pred             cceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC---CcEEEEeCCccccccccceee--------ccCcceee
Confidence            24444555     4889999999    99999 8888876   4566666554      11000        00000000


Q ss_pred             c----cccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC---C---CCcccEEEecCCCCe
Q 013578          194 H----HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT---N---QLKNNMAAISPNGRF  263 (440)
Q Consensus       194 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~---~~~v~~~~~s~~~~~  263 (440)
                      .    ...+       ......+.+++++  ++++++.|+.|++||+++++.+..+..   |   ...+.+++|+|++++
T Consensus       177 ~~~~~~~~~-------~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~  247 (397)
T 1sq9_A          177 GTVESPMTP-------SQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  247 (397)
T ss_dssp             EEECCSSSS-------CCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             eeeccccCC-------CCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence            0    0000       1123334457777  899999999999999999999999988   8   889999999999999


Q ss_pred             EEEEecC---CCEEEEEeEecCCCceeeeeeeeeeec-------------cccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          264 LAAAAFT---ADVKVWEIVYSKDGLVKAVTSVMQLKG-------------HKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       264 l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      |++++.|   |.|++||++..+        .+..+.+             |...|.+++|+|++++|++++.||.|++||
T Consensus       248 l~~~~~d~~~g~i~i~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          248 LAIAHDSNSFGCITLYETEFGE--------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             EEEEEEETTEEEEEEEETTTCC--------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             EEEEecCCCCceEEEEECCCCc--------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            9999999   999999987654        5666777             999999999999999999999999999999


Q ss_pred             cCccccccCCCCccc--c-----ccccccCCCCCeeeeeeEEeCCCC----------CEEEEec-CCEEEEEEcCCcc
Q 013578          328 INVRYHLDEDPKTLK--V-----LPIPLLDSNGATLQYDRLSLSSDG----------KILAATH-GSTLQWLSVETGK  387 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~v~~~~~s~~g----------~~l~~~~-~~~i~i~d~~~~~  387 (440)
                      ++++..+........  .     .....+....|...|.+++|+|++          ++|++++ |+.|++|++.+|+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            987654422110000  0     000000111236779999999998          6787765 9999999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-32  Score=248.09  Aligned_cols=248  Identities=17%  Similarity=0.197  Sum_probs=197.7

Q ss_pred             cceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEcc-CCCeEEEEeecCCcceEEeec
Q 013578           92 DSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFAD-NATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      .....++++|+...+ ++++.||.|+||++...... ........+|...|.+++|+| ++.                  
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-~~~~~~~~~h~~~V~~~~~~p~~~~------------------   95 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-DKNVPLVCGHTAPVLDIAWCPHNDN------------------   95 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-CTTCCCBCCCSSCEEEEEECTTCTT------------------
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-CCCCceEecCCCCEEEEEeCCCCCC------------------
Confidence            345568999887544 46789999999999654321 112234457889999999988 543                  


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-------cee
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-------KLL  242 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~  242 (440)
                                                                         +|++++.|+.|++||+.++       +.+
T Consensus        96 ---------------------------------------------------~l~s~s~dg~v~vw~~~~~~~~~~~~~~~  124 (402)
T 2aq5_A           96 ---------------------------------------------------VIASGSEDCTVMVWEIPDGGLVLPLREPV  124 (402)
T ss_dssp             ---------------------------------------------------EEEEEETTSEEEEEECCTTCCSSCBCSCS
T ss_pred             ---------------------------------------------------EEEEEeCCCeEEEEEccCCCCccccCCce
Confidence                                                               7888899999999999987       567


Q ss_pred             eeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeee--eccccceEEEEEcCCCCEEEEEeC
Q 013578          243 GNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL--KGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      ..+..|...|.+++|+|++ ++|++++.||.|++||+..+.        .+..+  .+|...|.+++|+|++.+|++++.
T Consensus       125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  196 (402)
T 2aq5_A          125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA--------AVLTLGPDVHPDTIYSVDWSRDGALICTSCR  196 (402)
T ss_dssp             EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE--------EEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred             EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC--------ccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence            8888999999999999998 699999999999999987654        56667  789999999999999999999999


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCee-eeeeEEeCCCCCEEEEe----cCCEEEEEEcCCccc-hhhhh
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL-QYDRLSLSSDGKILAAT----HGSTLQWLSVETGKV-LDTAE  393 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~----~~~~i~i~d~~~~~~-~~~~~  393 (440)
                      |+.|++||++++..+...             ...+.. .+.++.|+|++++|++|    .++.|++||+.+++. +....
T Consensus       197 d~~i~iwd~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~  263 (402)
T 2aq5_A          197 DKRVRVIEPRKGTVVAEK-------------DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE  263 (402)
T ss_dssp             TSEEEEEETTTTEEEEEE-------------ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred             CCcEEEEeCCCCceeeee-------------ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence            999999999876443210             012222 36789999999999998    589999999998775 33332


Q ss_pred             ccccCCeEEEEecCCCCCCCCCcceEEE-EeeCCCeEEEEeCCCCC
Q 013578          394 KAHEGEITCMAWAPKTIPMGNQQVSVLA-TSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       394 ~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~~Dg~i~vw~~~~~~  438 (440)
                      ..|...|.+++|+|++        .+|+ +|+.||.|++|++.+++
T Consensus       264 ~~~~~~v~~~~~s~~~--------~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          264 LDTSSGVLLPFFDPDT--------NIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             CCCCSSCEEEEEETTT--------TEEEEEETTCSCEEEEEECSST
T ss_pred             ccCCCceeEEEEcCCC--------CEEEEEEcCCCeEEEEEecCCC
Confidence            3577889999999998        6775 55679999999998876

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.8e-33  Score=253.56  Aligned_cols=274  Identities=14%  Similarity=0.161  Sum_probs=193.6

Q ss_pred             CCCCCCCCCCCCcccCccc------cccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578           65 PHSHSHGDKDQNKRHHPLD------VNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP  137 (440)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~------~~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~  137 (440)
                      ....++++.|+.+++|+..      +..+.+|.+.|++|+|+| ++++|+||+.||+|++||+.+...   ........+
T Consensus       132 ~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~  208 (435)
T 4e54_B          132 PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL---RVFASSDTI  208 (435)
T ss_dssp             TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE---EEEECCSSC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce---eEEeccCCC
Confidence            3445677889999998653      345679999999999998 789999999999999999975431   223333344


Q ss_pred             CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578          138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD  217 (440)
Q Consensus       138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (440)
                      ...+.+++|+|++.++++++.+   ..+.+|+......                 .....|...+.       .+.++|+
T Consensus       209 ~~~~~~~~~~~~~~~l~~g~~d---g~i~~wd~~~~~~-----------------~~~~~h~~~v~-------~v~~~p~  261 (435)
T 4e54_B          209 NIWFCSLDVSASSRMVVTGDNV---GNVILLNMDGKEL-----------------WNLRMHKKKVT-------HVALNPC  261 (435)
T ss_dssp             SCCCCCEEEETTTTEEEEECSS---SBEEEEESSSCBC-----------------CCSBCCSSCEE-------EEEECTT
T ss_pred             CccEEEEEECCCCCEEEEEeCC---CcEeeeccCccee-----------------EEEecccceEE-------eeeecCC
Confidence            5568899999999999999877   4677776542210                 00112222222       2344788


Q ss_pred             CCeEEEEeeCCceEEEEeCCCCceeee---eeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578          218 GSTIIASCSEGTDISIWHGKTGKLLGN---VDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      +..++++++.|+.|++||+++.+....   ...|...|.+++|+|+|++|++++.||.|++||+....        ....
T Consensus       262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~--------~~~~  333 (435)
T 4e54_B          262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD--------CPLG  333 (435)
T ss_dssp             CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS--------SEEE
T ss_pred             CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc--------cceE
Confidence            877899999999999999988765433   35688899999999999999999999999999987654        2223


Q ss_pred             eecccc------ceEEEEEcCCCCEEEEEe------------CCCcEEEEecCccccccCCCCccccccccccCCCCCee
Q 013578          295 LKGHKS------AVTWLCFAPNSEQIITAS------------KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL  356 (440)
Q Consensus       295 ~~~h~~------~v~~~~~~p~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (440)
                      +..|..      .+....|+|++..+++++            .++.|++||..++..+..             ...+|..
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~-------------l~~~~~~  400 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ-------------LYDPESS  400 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE-------------ECCSSCC
T ss_pred             EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE-------------EeCCCCC
Confidence            333321      233456677666666554            345799999987654321             1123444


Q ss_pred             eeeeE-EeCCCCCEEEEecCCEEEEEEcCCccch
Q 013578          357 QYDRL-SLSSDGKILAATHGSTLQWLSVETGKVL  389 (440)
Q Consensus       357 ~v~~~-~~s~~g~~l~~~~~~~i~i~d~~~~~~~  389 (440)
                      .|.++ +|+|+|++|++|+|+.|+||++++++..
T Consensus       401 ~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          401 GISSLNEFNPMGDTLASAMGYHILIWSQQEARTR  434 (435)
T ss_dssp             CCCCEEEECTTSSCEEEECSSEEEECCCC-----
T ss_pred             cEEEEEEECCCCCEEEEEcCCcEEEEECCcCeee
Confidence            56666 6999999999999999999999988753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=5.7e-33  Score=249.80  Aligned_cols=278  Identities=12%  Similarity=0.085  Sum_probs=184.4

Q ss_pred             ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      ...|...+....+++++.+|++|+.|++|+|||+..++...........+|.+.|.+++|+|....      .       
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~------~-------  151 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSA------D-------  151 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECT------T-------
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEcccccc------c-------
Confidence            344556666666777888999999999999999988765544555567789999999999873110      0       


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD  246 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  246 (440)
                                                                     ...+++ +|++++.|++|++||+.++.++..+.
T Consensus       152 -----------------------------------------------~~~d~~-~las~s~D~tv~~Wd~~~~~~~~~~~  183 (393)
T 4gq1_A          152 -----------------------------------------------NRLAEQ-VIASVGDDCTLIIWRLTDEGPILAGY  183 (393)
T ss_dssp             -----------------------------------------------CSEEEE-EEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred             -----------------------------------------------cCCCCC-EEEEEECCCeEEEEECCCCceeeeec
Confidence                                                           011333 89999999999999999888888888


Q ss_pred             CCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceee-----------------eeeeeeeeccccceEEEEEc
Q 013578          247 TNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKA-----------------VTSVMQLKGHKSAVTWLCFA  308 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------~~~~~~~~~h~~~v~~~~~~  308 (440)
                      .|...+.+++|+|++ ++|++|+.||.|++||++.++......                 ........+|...|.++.|+
T Consensus       184 ~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~  263 (393)
T 4gq1_A          184 PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI  263 (393)
T ss_dssp             ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE
T ss_pred             CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee
Confidence            888999999999987 489999999999999986654211000                 00112235788899999987


Q ss_pred             -CCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc-----ccccCCCCCeeeeeeEEeCCC-CCEEEEec-CCEEEE
Q 013578          309 -PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP-----IPLLDSNGATLQYDRLSLSSD-GKILAATH-GSTLQW  380 (440)
Q Consensus       309 -p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~-~~~i~i  380 (440)
                       |++..|++++.|+++++||+.................     ............+..+.+.+. +.++++|+ |+.|++
T Consensus       264 ~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~l  343 (393)
T 4gq1_A          264 GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQL  343 (393)
T ss_dssp             TTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEE
T ss_pred             cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEE
Confidence             7999999999999999999987654322111100000     000000111112222333333 44566665 899999


Q ss_pred             EEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          381 LSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       381 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ||+.+++....+ ..|...|.+++|+|++        ++||+++.|| +.+|++.
T Consensus       344 wd~~~~~~~~~~-~~~~~~V~svafspdG--------~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          344 INTYEKDSNSIP-IQLGMPIVDFCWHQDG--------SHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EETTCTTCCEEE-EECSSCEEEEEECTTS--------SEEEEEESSE-EEEEEEG
T ss_pred             EECCCCcEEEEe-cCCCCcEEEEEEcCCC--------CEEEEEeCCC-eEEEEEe
Confidence            999999988777 4788999999999999        8999998766 6666553

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-32  Score=240.04  Aligned_cols=276  Identities=11%  Similarity=0.088  Sum_probs=194.0

Q ss_pred             EEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccc
Q 013578           97 LCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIST  176 (440)
Q Consensus        97 l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  176 (440)
                      ..+.+++++|++|+.||+|++||+.++....  .+.     ...|.++.|+|+   +++++.|   ..+.+|+.......
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~--~~~-----~~~v~~~~~~~~---~~s~s~D---~~i~~w~~~~~~~~  108 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTIT--TIT-----TPNPRTGGEHPA---IISRGPC---NRLLLLYPGNQITI  108 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEE--EEE-----EECCCTTCCCCS---EEEECST---TEEEEEETTTEEEE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEE--EEe-----cCCceeeeeCCc---eEEecCC---CeEEEEEccCceEE
Confidence            3455688999999999999999998765321  111     266888889988   7777766   56777765543211


Q ss_pred             ccccccCCCCCCceeecccccccceeEE-Ee-ecccccccCC--CCCeEEEEeeCCceEEEEeCCCCceeeeee-CCCCc
Q 013578          177 NEGKQQSKLPGPEIKWEHHKVHDKRAIL-TL-FGASATYGTA--DGSTIIASCSEGTDISIWHGKTGKLLGNVD-TNQLK  251 (440)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~  251 (440)
                                     |+........... .. .....+.++|  +++ ++++++.|++|++||+++++.+.... .+...
T Consensus       109 ---------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~  172 (343)
T 3lrv_A          109 ---------------LDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE  172 (343)
T ss_dssp             ---------------EETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred             ---------------eecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence                           1111111000000 00 1123344567  777 89999999999999999998876653 34557


Q ss_pred             ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee-eeeec-cccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578          252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV-MQLKG-HKSAVTWLCFAPNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                      +.+++|+|++.+|++|+.||.|++||++.+.        .. ..+.+ |.++|++++|+|++.+|++++ |+.|++||++
T Consensus       173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~--------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~  243 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPD--------QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLR  243 (343)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEESSCTT--------SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETT
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCC--------CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcC
Confidence            9999999999999999999999999998765        33 56677 999999999999999999999 5599999999


Q ss_pred             ccccccCCCCccccccccccCCCCCeeee--eeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578          330 VRYHLDEDPKTLKVLPIPLLDSNGATLQY--DRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAW  405 (440)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~  405 (440)
                      +.......    ..+       ..+...+  .+++|+|+|++|++++  ++.+++|+..+.......     .++..++|
T Consensus       244 ~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~  307 (343)
T 3lrv_A          244 KDVGTLAY----PTY-------TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCL  307 (343)
T ss_dssp             SSTTCBSS----CCC-------BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC
T ss_pred             CCCcceee----ccc-------ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEec
Confidence            76443211    100       0111222  3699999999999843  899999999766543221     56788899


Q ss_pred             cC---CCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          406 AP---KTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       406 ~~---~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      .+   +.        ..|++++.||.++++-.
T Consensus       308 ~~~~~~~--------~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          308 QSDTADF--------TDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             ----CCC--------CEEEEEEETTEEEEEEE
T ss_pred             Ccccccc--------ceeEEEecCCceEEEEe
Confidence            98   55        78999999999988754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-31  Score=237.86  Aligned_cols=286  Identities=15%  Similarity=0.138  Sum_probs=213.6

Q ss_pred             CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578           67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT  142 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~  142 (440)
                      ..+++..++.++.|..    .+..+.+|.+.|.+++|+|++++|++++.||.|++||+.++...     ... .+...+.
T Consensus        46 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~-~~~~~v~  119 (369)
T 3zwl_B           46 LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV-----ATW-KSPVPVK  119 (369)
T ss_dssp             EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-----EEE-ECSSCEE
T ss_pred             EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----EEe-ecCCCeE
Confidence            4456667788887754    46788999999999999999999999999999999999876532     222 2668899


Q ss_pred             eEEEccCCCeEEEEeec--CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe
Q 013578          143 AVAFADNATSIVVATHN--LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST  220 (440)
Q Consensus       143 ~v~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (440)
                      +++|+|+++++++++.+  .....+.+|+...............  .......   .+..     ......+.++++++ 
T Consensus       120 ~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~~~~~~~---~~~~-----~~~~~~~~~~~~~~-  188 (369)
T 3zwl_B          120 RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE--EPIHKII---THEG-----LDAATVAGWSTKGK-  188 (369)
T ss_dssp             EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS--SCSEEEE---CCTT-----CCCEEEEEECGGGC-
T ss_pred             EEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc--ceeeecc---CCcC-----ccceeEEEEcCCCC-
Confidence            99999999999998865  2224666666554321111100000  0000000   0000     00222334577777 


Q ss_pred             EEEEeeCCceEEEEeCCC-CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578          221 IIASCSEGTDISIWHGKT-GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK  299 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  299 (440)
                      ++++++.|+.|++||+.+ ++.+..+..|...+.+++|+|++++|++++.||.|++||++...        ....+. +.
T Consensus       189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--------~~~~~~-~~  259 (369)
T 3zwl_B          189 YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--------VLKKYE-TD  259 (369)
T ss_dssp             EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------EEEEEE-CS
T ss_pred             EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc--------eeeeec-CC
Confidence            899999999999999998 78888899999999999999999999999999999999986654        444444 77


Q ss_pred             cceEEEEEcCCCCEEEEEeCCC--------------cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578          300 SAVTWLCFAPNSEQIITASKDG--------------TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS  365 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  365 (440)
                      ..+.+++|+|+++++++++.++              .+++||+.+...+.              ...+|...|.+++|+|
T Consensus       260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--------------~~~~~~~~v~~~~~s~  325 (369)
T 3zwl_B          260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG--------------RVQGHFGPLNTVAISP  325 (369)
T ss_dssp             SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE--------------EEECCSSCEEEEEECT
T ss_pred             CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh--------------heecccCcEEEEEECC
Confidence            8899999999999999999988              89999988654321              1234566799999999


Q ss_pred             CCCEEEEec-CCEEEEEEcCCccchhhh
Q 013578          366 DGKILAATH-GSTLQWLSVETGKVLDTA  392 (440)
Q Consensus       366 ~g~~l~~~~-~~~i~i~d~~~~~~~~~~  392 (440)
                      ++++|++++ |+.|++|++.++.....+
T Consensus       326 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~  353 (369)
T 3zwl_B          326 QGTSYASGGEDGFIRLHHFEKSYFDFKY  353 (369)
T ss_dssp             TSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred             CCCEEEEEcCCCeEEEEECccccchhHH
Confidence            999999876 999999999887655443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-31  Score=242.04  Aligned_cols=281  Identities=16%  Similarity=0.218  Sum_probs=197.2

Q ss_pred             CCCCCCCcccCccc----cccccc-cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578           70 HGDKDQNKRHHPLD----VNTLKG-HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV  144 (440)
Q Consensus        70 ~~~~~~~~~~~~~~----~~~l~~-H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v  144 (440)
                      .+..++.++.|...    ...+.. |.+.|.+++|+|++++|++|+.||.|++||+.++.     .......|...|.++
T Consensus       108 ~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~  182 (401)
T 4aez_A          108 AVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-----KLRTMAGHQARVGCL  182 (401)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEE
T ss_pred             EEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-----EEEEecCCCCceEEE
Confidence            34456667766542    233333 89999999999999999999999999999998764     344556788999999


Q ss_pred             EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578          145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS  224 (440)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  224 (440)
                      +|  ++..+++++.+   ..+.+|+.......               ......+..       ....+.+++++. ++++
T Consensus       183 ~~--~~~~l~~~~~d---g~i~i~d~~~~~~~---------------~~~~~~~~~-------~v~~~~~~~~~~-~l~s  234 (401)
T 4aez_A          183 SW--NRHVLSSGSRS---GAIHHHDVRIANHQ---------------IGTLQGHSS-------EVCGLAWRSDGL-QLAS  234 (401)
T ss_dssp             EE--ETTEEEEEETT---SEEEEEETTSSSCE---------------EEEEECCSS-------CEEEEEECTTSS-EEEE
T ss_pred             EE--CCCEEEEEcCC---CCEEEEecccCcce---------------eeEEcCCCC-------CeeEEEEcCCCC-EEEE
Confidence            99  45788888876   56777765422100               000011111       122334577777 9999


Q ss_pred             eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC-eEEEEe--cCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578          225 CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR-FLAAAA--FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA  301 (440)
Q Consensus       225 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~  301 (440)
                      ++.|+.|++||+.+++.+..+..|...+.+++|+|++. ++++++  .|+.|++||+..+.        .+..+. +...
T Consensus       235 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~--------~~~~~~-~~~~  305 (401)
T 4aez_A          235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA--------RVNTVD-AGSQ  305 (401)
T ss_dssp             EETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC--------EEEEEE-CSSC
T ss_pred             EeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC--------EEEEEe-CCCc
Confidence            99999999999999999999999999999999999765 555544  79999999987654        444454 6678


Q ss_pred             eEEEEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578          302 VTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL  378 (440)
Q Consensus       302 v~~~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i  378 (440)
                      |.+++|+|++++|++++  .||.|++||++++....            .....+|...|.+++|+|+|++|++++ |+.|
T Consensus       306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~------------~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i  373 (401)
T 4aez_A          306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK------------QVDIPAHDTRVLYSALSPDGRILSTAASDENL  373 (401)
T ss_dssp             EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE------------EEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred             EEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee------------EEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            99999999999999854  89999999998643211            111234566789999999999999876 8999


Q ss_pred             EEEEcCCccchhhhhccccCCeEEEE
Q 013578          379 QWLSVETGKVLDTAEKAHEGEITCMA  404 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~~h~~~v~~v~  404 (440)
                      ++|++.+++.+......+......+.
T Consensus       374 ~iw~~~~~~~~~~~~~~~~~~~~~i~  399 (401)
T 4aez_A          374 KFWRVYDGDHVKRPIPITKTPSSSIT  399 (401)
T ss_dssp             EEEECCC-------------------
T ss_pred             EEEECCCCccccccccccCCCcccee
Confidence            99999999887765433444444443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.2e-31  Score=226.55  Aligned_cols=298  Identities=14%  Similarity=0.127  Sum_probs=195.6

Q ss_pred             cccccccCc----ceeEEEEccCCC---EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEE
Q 013578           84 VNTLKGHGD----SVTGLCFSSDGK---CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVA  156 (440)
Q Consensus        84 ~~~l~~H~~----~V~~l~~s~dg~---~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  156 (440)
                      +..|+.-.+    .+.++-|-..|-   .+++++.+ +|++|+..+.  ..+........|+.+|..+.|.||...|+..
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  104 (356)
T 2w18_A           28 VSELKNPSGSCSVDVSAMFWERAGCKEPCIITACED-VVSLWKALDA--WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCV  104 (356)
T ss_dssp             EEEECCCCSSCEEEEEEEEEC----CEEEEEEEESS-EEEEEEESSS--SBEEEEEEEECCSSCEEEECCCTTCCSCEEE
T ss_pred             eehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccc-eEEEcccCCC--ccceeeEEEeccCceeEEEEEcCcccceeee
Confidence            444554433    355666655443   67787765 7999999875  3445667777888899999999987776665


Q ss_pred             eec-CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee--CCceEEE
Q 013578          157 THN-LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS--EGTDISI  233 (440)
Q Consensus       157 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~v  233 (440)
                      .-. .....++..-.....            .....+.....+...+          ...++++ ++.+++  .|+.|++
T Consensus       105 ~~~~~~~~~v~sla~spd~------------~~~~~~l~s~g~~~~v----------~~l~~g~-lv~ss~~g~d~~V~~  161 (356)
T 2w18_A          105 ALGNLEIREIRALFCSSDD------------ESEKQVLLKSGNIKAV----------LGLTKRR-LVSSSGTLSDQQVEV  161 (356)
T ss_dssp             EECSSSEEEEEEECC------------------CCEEEEEEEEEEEE----------EEETTTE-EEEEESSSTTCEEEE
T ss_pred             eeccccccceEEEEECCCc------------cccccEEEeCCCeEEE----------EecCCCc-EEEecccCCCCcEEE
Confidence            533 111222111110000            0000111111111111          0123443 555533  5999999


Q ss_pred             EeC-CCCceeeeeeCCCCcccEEEecC---CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc---cceEEEE
Q 013578          234 WHG-KTGKLLGNVDTNQLKNNMAAISP---NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK---SAVTWLC  306 (440)
Q Consensus       234 wd~-~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~  306 (440)
                      |++ .+++.+..+..|...++.++|++   ++..|++|+.|++|+|||+.+++        .+..+.+|.   ..+.+++
T Consensus       162 ~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk--------~l~tL~g~~~~v~~v~~va  233 (356)
T 2w18_A          162 MTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ--------LLKKMHIDDSYQASVCHKA  233 (356)
T ss_dssp             EEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC--------EEEEEECCC---CCCEEEE
T ss_pred             EEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc--------EEEEEcCCCcceeeeEEEE
Confidence            999 55888888889999999999999   78999999999999999998776        677777654   3677889


Q ss_pred             EcCCCCEE------------EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578          307 FAPNSEQI------------ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH  374 (440)
Q Consensus       307 ~~p~~~~l------------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  374 (440)
                      |+|+|.++            ++|+.|++|++||..++..+.       .+....  ..+|...+.  ..+.++.++|+++
T Consensus       234 fSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~-------v~~~~~--p~Gh~~~~l--sg~~sg~~lASgS  302 (356)
T 2w18_A          234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG-------VMLYCL--PPGQAGRFL--EGDVKDHCAAAIL  302 (356)
T ss_dssp             EEETTEEEEEEC------------CCEEEEEEETTTTEEEE-------EEEECC--CTTCCCCEE--EEEEETTEEEEEE
T ss_pred             ECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE-------EEEeec--cCCCcceeE--ccccCCCEEEEEc
Confidence            99999876            567889999999998775532       110000  122322232  2333377888876


Q ss_pred             -CCEEEEEEcCCccchhhhhccccCCeE-EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          375 -GSTLQWLSVETGKVLDTAEKAHEGEIT-CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       375 -~~~i~i~d~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                       |++|+|||+.+++++..+ .+|...+. .++|+|++        ++|++|+.|++|||||+.
T Consensus       303 ~DgTIkIWDl~tGk~l~tL-~gH~~~vvs~vafSPDG--------~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          303 TSGTIAIWDLLLGQCTALL-PPVSDQHWSFVKWSGTD--------SHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             TTSCEEEEETTTCSEEEEE-CCC--CCCCEEEECSSS--------SEEEEECTTSCEEEEEEC
T ss_pred             CCCcEEEEECCCCcEEEEe-cCCCCCeEEEEEECCCC--------CEEEEEECCCcEEEecCC
Confidence             999999999999999998 47877655 68999999        899999999999999963

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-31  Score=242.32  Aligned_cols=300  Identities=11%  Similarity=0.015  Sum_probs=209.4

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc-ceeeEE-------------------------------------
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK-SFKFLR-------------------------------------  132 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~-~~~~~~-------------------------------------  132 (440)
                      ..++.+++|++||++|+++ .++.|++||+.+++.. ......                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3589999999999976665 5789999999877611 000000                                     


Q ss_pred             --------------ecCCCCCCCceEEEccCCCeE-EEEeecCCcceEEeeccc--cccccccccccCCCCCCceeeccc
Q 013578          133 --------------INLPPGGPPTAVAFADNATSI-VVATHNLSGCSLYMYGEE--KAISTNEGKQQSKLPGPEIKWEHH  195 (440)
Q Consensus       133 --------------~~~~~~~~v~~v~~~~~~~~l-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  195 (440)
                                    ...++...|.+++|+|++++| ++++.+   ..+.+|+..  .....             ..+.. 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d---g~v~iwd~~~~~~~~~-------------~~~~~-  145 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD---KSLLVFDVDKTSKNVL-------------KLRKR-  145 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGG---TEEEEEEECSSSSSCE-------------EEEEE-
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC---CeEEEEECcCCCCcee-------------eeeec-
Confidence                          001234479999999999997 566555   456666654  21100             00000 


Q ss_pred             ccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee----eeeCCCCcccEEEecCC---CCeEEEEe
Q 013578          196 KVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG----NVDTNQLKNNMAAISPN---GRFLAAAA  268 (440)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~~~~  268 (440)
                             .........+.++|++. +|++++.++.|++|++.+++...    .+..|...|.+++|+|+   +++|++|+
T Consensus       146 -------~~~~~~v~~~~~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  217 (450)
T 2vdu_B          146 -------FCFSKRPNAISIAEDDT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD  217 (450)
T ss_dssp             -------EECSSCEEEEEECTTSS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE
T ss_pred             -------ccCCCCceEEEEcCCCC-EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc
Confidence                   00011223455688888 89999999999999998877554    77788899999999999   99999999


Q ss_pred             cCCCEEEEEeEecCCCceeeeeeeee-eeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcc--cccc
Q 013578          269 FTADVKVWEIVYSKDGLVKAVTSVMQ-LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTL--KVLP  345 (440)
Q Consensus       269 ~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~  345 (440)
                      .|+.|++||++.+.        .+.. +.+|...|.+++|+ ++.+|++++.|+.|++||++++..+.......  ..+.
T Consensus       218 ~d~~i~vwd~~~~~--------~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  288 (450)
T 2vdu_B          218 RDEHIKISHYPQCF--------IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYL  288 (450)
T ss_dssp             TTSCEEEEEESCTT--------CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGC
T ss_pred             CCCcEEEEECCCCc--------eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhh
Confidence            99999999997655        3444 56899999999999 99999999999999999999876543211100  0000


Q ss_pred             c---------cccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEc--CCc---cchhhhhccccCCeEEEEecCCC
Q 013578          346 I---------PLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSV--ETG---KVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       346 ~---------~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~--~~~---~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      .         ...........+..++|+|++++|+++.  ++.|++|++  .++   +.+..+ ..| +.|.+++|+|++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~-~~~-~~v~~~~~~~~~  366 (450)
T 2vdu_B          289 NDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII-TFP-YNVISLSAHNDE  366 (450)
T ss_dssp             CTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE-ECS-SCEEEEEEETTE
T ss_pred             hhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe-ccC-CceEEEEecCCc
Confidence            0         0000012345688999999999998764  799999999  555   555555 356 889999999974


Q ss_pred             CCCCCCcceEEEEeeC-------CCeEEEEeCCC
Q 013578          410 IPMGNQQVSVLATSSV-------DKKVKLWLAPS  436 (440)
Q Consensus       410 ~~~~~~~~~~l~t~~~-------Dg~i~vw~~~~  436 (440)
                               ++++.+.       +..|.+|.+..
T Consensus       367 ---------~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          367 ---------FQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             ---------EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             ---------EEEEEecccCCCCCCcceEEEEEEc
Confidence                     5555433       55688887654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.6e-31  Score=237.99  Aligned_cols=287  Identities=13%  Similarity=0.038  Sum_probs=210.0

Q ss_pred             CCCCCCCCCcccCcc------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578           68 HSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP  141 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v  141 (440)
                      .+.+..++.+++|..      .+..+.+|.+.|.+++|+|++++|++++.||.|++||+.++...   .......|...|
T Consensus        23 l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~v   99 (372)
T 1k8k_C           23 IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK---PTLVILRINRAA   99 (372)
T ss_dssp             EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE---EEEECCCCSSCE
T ss_pred             EEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee---eeEEeecCCCce
Confidence            455556777777753      46678899999999999999999999999999999999765421   223345678899


Q ss_pred             ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578          142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI  221 (440)
Q Consensus       142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (440)
                      .+++|+|+++++++++.+   ..+.+|+.........            .-.....+...       ...+.++++++ +
T Consensus       100 ~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~------------~~~~~~~~~~~-------i~~~~~~~~~~-~  156 (372)
T 1k8k_C          100 RCVRWAPNEKKFAVGSGS---RVISICYFEQENDWWV------------CKHIKKPIRST-------VLSLDWHPNSV-L  156 (372)
T ss_dssp             EEEEECTTSSEEEEEETT---SSEEEEEEETTTTEEE------------EEEECTTCCSC-------EEEEEECTTSS-E
T ss_pred             eEEEECCCCCEEEEEeCC---CEEEEEEecCCCccee------------eeeeecccCCC-------eeEEEEcCCCC-E
Confidence            999999999999999877   3455555443210000            00000111111       22334477777 8


Q ss_pred             EEEeeCCceEEEEeC------------------CCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCC
Q 013578          222 IASCSEGTDISIWHG------------------KTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD  283 (440)
Q Consensus       222 l~s~~~d~~i~vwd~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  283 (440)
                      +++++.|+.|++||+                  ..++.+..+..|...+.+++|+|++++|++++.||.|++||++.++ 
T Consensus       157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-  235 (372)
T 1k8k_C          157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM-  235 (372)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-
T ss_pred             EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-
Confidence            999999999999995                  4678888888899999999999999999999999999999997665 


Q ss_pred             CceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCc--cc--cccCCCCc----------cccc---c-
Q 013578          284 GLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINV--RY--HLDEDPKT----------LKVL---P-  345 (440)
Q Consensus       284 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~--~~--~~~~~~~~----------~~~~---~-  345 (440)
                             .+..+..|...|.+++|+|++.+|+++ .|+.|++|+++.  +.  ........          ...+   . 
T Consensus       236 -------~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (372)
T 1k8k_C          236 -------AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK  307 (372)
T ss_dssp             -------EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred             -------eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence                   677788899999999999999988877 899999999987  32  10000000          0000   0 


Q ss_pred             ---c-----c-ccCCCCCeeeeeeEEeC-CCC---CEEEEec-CCEEEEEEcCCccch
Q 013578          346 ---I-----P-LLDSNGATLQYDRLSLS-SDG---KILAATH-GSTLQWLSVETGKVL  389 (440)
Q Consensus       346 ---~-----~-~~~~~~~~~~v~~~~~s-~~g---~~l~~~~-~~~i~i~d~~~~~~~  389 (440)
                         .     . .....+|...|.+++|. ++|   .+|++|+ ||.|++|++.+++.+
T Consensus       308 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          308 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence               0     0 11123777889999966 666   8888865 999999999887654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.4e-32  Score=236.12  Aligned_cols=233  Identities=17%  Similarity=0.190  Sum_probs=181.2

Q ss_pred             CCCCCCCCCCcccCcc------ccccccccCcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578           67 SHSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG  138 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~  138 (440)
                      ..++++.|+.+++|..      .+..|.+|.+.|++++|++  ++++|+||+.|++|++||+.++...   .......|.
T Consensus        27 ~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~---~~~~~~~h~  103 (316)
T 3bg1_A           27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE---KSHEHAGHD  103 (316)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC---EEEEECCCS
T ss_pred             EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce---EEEEccCCC
Confidence            3567788888888864      3567899999999999986  4899999999999999999865322   233456788


Q ss_pred             CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      ..|.+++|+|+..                                                                  +
T Consensus       104 ~~V~~v~~~p~~~------------------------------------------------------------------g  117 (316)
T 3bg1_A          104 SSVNSVCWAPHDY------------------------------------------------------------------G  117 (316)
T ss_dssp             SCCCEEEECCTTT------------------------------------------------------------------C
T ss_pred             CceEEEEECCCCC------------------------------------------------------------------C
Confidence            8999999998631                                                                  1


Q ss_pred             CeEEEEeeCCceEEEEeCCCCce---eeeeeCCCCcccEEEecCC-----------------CCeEEEEecCCCEEEEEe
Q 013578          219 STIIASCSEGTDISIWHGKTGKL---LGNVDTNQLKNNMAAISPN-----------------GRFLAAAAFTADVKVWEI  278 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~-----------------~~~l~~~~~dg~i~i~d~  278 (440)
                      . +|++++.|+.|++||+..+..   ...+..|...+.+++|+|+                 +++|++|+.|+.|++||+
T Consensus       118 ~-~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~  196 (316)
T 3bg1_A          118 L-ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE  196 (316)
T ss_dssp             S-CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred             c-EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence            1 688999999999999987632   3455678888999999997                 478999999999999998


Q ss_pred             EecCCCceeeeeeeeeeeccccceEEEEEcCCC----CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCC
Q 013578          279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS----EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA  354 (440)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (440)
                      +...     .......+.+|...|.+++|+|++    .+|++++.|++|++||++......   .....+       ..+
T Consensus       197 ~~~~-----~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~---~~~~~~-------~~~  261 (316)
T 3bg1_A          197 EEDG-----QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT---WSPKLL-------HKF  261 (316)
T ss_dssp             CTTS-----CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC---CBCCEE-------EEC
T ss_pred             CCCC-----ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc---hhhhhh-------hcC
Confidence            5331     112456788999999999999986    789999999999999997531100   000000       123


Q ss_pred             eeeeeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578          355 TLQYDRLSLSSDGKILAATH-GSTLQWLSVE  384 (440)
Q Consensus       355 ~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~  384 (440)
                      ...|.+++|+|++++|++++ |+.|++|+..
T Consensus       262 ~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          262 NDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            45689999999999998865 8999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.6e-31  Score=233.67  Aligned_cols=206  Identities=13%  Similarity=0.168  Sum_probs=160.6

Q ss_pred             cccCcceeEEEEccCCCEEEE--eeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           88 KGHGDSVTGLCFSSDGKCLAT--ACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t--~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      ..+...+.+++|||||++|++  ++.|++|+|||+.+....     . ...|...|.+++|+|+++              
T Consensus       130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~-----~-~~~~~~~V~~v~fspdg~--------------  189 (365)
T 4h5i_A          130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK-----F-EIETRGEVKDLHFSTDGK--------------  189 (365)
T ss_dssp             CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE-----E-EEECSSCCCEEEECTTSS--------------
T ss_pred             CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE-----E-EeCCCCceEEEEEccCCc--------------
Confidence            345677999999999999765  457999999999876421     1 123667899999999877              


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee--
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG--  243 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--  243 (440)
                                                                             ++++++.++ +++|+..+++.+.  
T Consensus       190 -------------------------------------------------------~l~s~s~~~-~~~~~~~~~~~~~~~  213 (365)
T 4h5i_A          190 -------------------------------------------------------VVAYITGSS-LEVISTVTGSCIARK  213 (365)
T ss_dssp             -------------------------------------------------------EEEEECSSC-EEEEETTTCCEEEEE
T ss_pred             -------------------------------------------------------eEEecccee-EEEEEeccCcceeee
Confidence                                                                   455555444 6677777776553  


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCC----CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTA----DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      ....|...+.+++|+|+++++++++.|+    .+++|++....    ........+.+|...|++++|+|+|++||+|+.
T Consensus       214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          214 TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN----TSVLRSKQVTNRFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE----EEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred             ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce----ecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence            3345778899999999999999999887    47778875443    222345667889999999999999999999999


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG  386 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~  386 (440)
                      |++|+|||+++++.+..             ...+|...|++++|+|||++||+|+ |++|+|||+...
T Consensus       290 D~~V~iwd~~~~~~~~~-------------~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          290 DNSIALVKLKDLSMSKI-------------FKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TSCEEEEETTTTEEEEE-------------ETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCEEEEEECCCCcEEEE-------------ecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999987654321             1246778899999999999999976 999999998644

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-31  Score=240.87  Aligned_cols=267  Identities=14%  Similarity=0.156  Sum_probs=195.0

Q ss_pred             CCCCCCCCCCCcccCccc----ccc--ccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578           66 HSHSHGDKDQNKRHHPLD----VNT--LKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG  138 (440)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~----~~~--l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~  138 (440)
                      ...+++..++.+++|...    ...  +.+|.+.|.+++|+| ++++|++++.||.|++||+...   ..........+.
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~  163 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS---VIQVFAKTDSWD  163 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC---EEEEEECCCCSS
T ss_pred             CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC---ceEEEeccCCCC
Confidence            345677778888888653    222  347999999999999 7899999999999999999852   222333334455


Q ss_pred             CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      ..|.+++|+|+++++++++.+   ..+.+|+.....              .   .....+...       ...+.++|++
T Consensus       164 ~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~--------------~---~~~~~h~~~-------v~~~~~~~~~  216 (383)
T 3ei3_B          164 YWYCCVDVSVSRQMLATGDST---GRLLLLGLDGHE--------------I---FKEKLHKAK-------VTHAEFNPRC  216 (383)
T ss_dssp             CCEEEEEEETTTTEEEEEETT---SEEEEEETTSCE--------------E---EEEECSSSC-------EEEEEECSSC
T ss_pred             CCeEEEEECCCCCEEEEECCC---CCEEEEECCCCE--------------E---EEeccCCCc-------EEEEEECCCC
Confidence            789999999999999999877   567777753210              0   000111111       2233457888


Q ss_pred             CeEEEEeeCCceEEEEeCCC----CceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578          219 STIIASCSEGTDISIWHGKT----GKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      +.++++++.|+.|++||+++    +..+..+ .|...+.+++|+| ++++|++++.|+.|++||++....        ..
T Consensus       217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~  287 (383)
T 3ei3_B          217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK--------PD  287 (383)
T ss_dssp             TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS--------CS
T ss_pred             CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc--------cc
Confidence            76899999999999999987    5566666 5788999999999 999999999999999999976652        22


Q ss_pred             eeec-------cc----------cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCee
Q 013578          294 QLKG-------HK----------SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL  356 (440)
Q Consensus       294 ~~~~-------h~----------~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (440)
                      .+.+       |.          +.+..++|+|++++  +++.|+.|++||++++..+..            .....+..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~------------l~~~~~~~  353 (383)
T 3ei3_B          288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ------------LRDPNAAG  353 (383)
T ss_dssp             EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE------------ECBTTBCS
T ss_pred             ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee------------ecCCCCCc
Confidence            2222       22          34455677777766  778999999999987654321            11122344


Q ss_pred             eeeeEEeCCCCCEEEEecCCEEEEEEcCC
Q 013578          357 QYDRLSLSSDGKILAATHGSTLQWLSVET  385 (440)
Q Consensus       357 ~v~~~~~s~~g~~l~~~~~~~i~i~d~~~  385 (440)
                      .+..++|+|++++|++++|+.|++||+++
T Consensus       354 ~~~~~~~s~~g~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          354 IISLNKFSPTGDVLASGMGFNILIWNRED  382 (383)
T ss_dssp             CCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred             eEEEEEEecCccEEEEecCCcEEEEecCC
Confidence            56678999999999999999999999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.8e-30  Score=231.04  Aligned_cols=289  Identities=14%  Similarity=0.114  Sum_probs=201.0

Q ss_pred             CCCcccCcccc-----ccccccCcceeEEEEccC---CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578           74 DQNKRHHPLDV-----NTLKGHGDSVTGLCFSSD---GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA  145 (440)
Q Consensus        74 ~~~~~~~~~~~-----~~l~~H~~~V~~l~~s~d---g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~  145 (440)
                      ++.+++|...-     ....+|.+.|.+++|+|+   |++|++|+.||.|++||+.++..    .......|...|.++.
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~  118 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM----PVYSVKGHKEIINAID  118 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS----CSEEECCCSSCEEEEE
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc----cEEEEEecccceEEEe
Confidence            67777775532     223379999999999998   79999999999999999987652    2234457888999995


Q ss_pred             ------EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578          146 ------FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS  219 (440)
Q Consensus       146 ------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (440)
                            |+|+++.+++++.+   ..+.+|+......            ....+.....+....+....  ....+++++.
T Consensus       119 ~~~~~~~s~~~~~l~~~~~d---~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~  181 (357)
T 3i2n_A          119 GIGGLGIGEGAPEIVTGSRD---GTVKVWDPRQKDD------------PVANMEPVQGENKRDCWTVA--FGNAYNQEER  181 (357)
T ss_dssp             EESGGGCC-CCCEEEEEETT---SCEEEECTTSCSS------------CSEEECCCTTSCCCCEEEEE--EECCCC-CCC
T ss_pred             eccccccCCCccEEEEEeCC---CeEEEEeCCCCCC------------cceeccccCCCCCCceEEEE--EEeccCCCCC
Confidence                  57899999999877   5677887655320            11111111111111111110  0112467777


Q ss_pred             eEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC---CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP---NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       220 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                       ++++++.|+.|++||+++++.... ..+...+.+++|+|   ++++|++++.||.|++||++........   ....+.
T Consensus       182 -~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~  256 (357)
T 3i2n_A          182 -VVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF---ASVSEK  256 (357)
T ss_dssp             -EEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE---EEEEEE
T ss_pred             -EEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce---eeeccC
Confidence             899999999999999998887544 45678899999999   9999999999999999999876521111   122445


Q ss_pred             ccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccc-----cccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          297 GHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVL-----PIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                      +|...|.+++|+|++. +|++++.||.|++||++...............     ........+|...|.+++|+|++++|
T Consensus       257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  336 (357)
T 3i2n_A          257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGL  336 (357)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTE
T ss_pred             CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeE
Confidence            8999999999999998 89999999999999998654321110000000     01122234566779999999999988


Q ss_pred             E-Eec-CCEEEEEEcCCccc
Q 013578          371 A-ATH-GSTLQWLSVETGKV  388 (440)
Q Consensus       371 ~-~~~-~~~i~i~d~~~~~~  388 (440)
                      + +++ |+.|++||+.+.+.
T Consensus       337 ~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          337 CVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEETTSEEEEEEECC---
T ss_pred             EEEecCCCcEEEEECCCccc
Confidence            7 554 99999999987654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-32  Score=246.99  Aligned_cols=278  Identities=10%  Similarity=0.137  Sum_probs=201.0

Q ss_pred             EEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec-CCCCCCCceEEEcc-CCCeEEEEeecCCcceEEeeccccccc
Q 013578           98 CFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN-LPPGGPPTAVAFAD-NATSIVVATHNLSGCSLYMYGEEKAIS  175 (440)
Q Consensus        98 ~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~  175 (440)
                      .|+|+++.+++++      .|+....      ..... .+|.+.|.+++|+| ++++|++++.+   ..+.+|+......
T Consensus        34 ~f~~~~~~~~~~~------~w~~~g~------~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d---g~v~vwd~~~~~~   98 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLRGK------LIATLMENEPNSITSSAVSPGETPYLITGSDQ---GVIKIWNLKEIIV   98 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCCCC------EEEEECTTTTSCEEEEEEECSSSCEEEEEETT---SEEEEEEHHHHHT
T ss_pred             hcCCccccccccc------cccccce------EEeeeccCCCCceEEEEECCCCCCEEEEecCC---ceEEEeECccccc
Confidence            4788888888765      3764421      33334 67889999999999 99999999977   5777887654210


Q ss_pred             cccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC---CCceeeeeeC-----
Q 013578          176 TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK---TGKLLGNVDT-----  247 (440)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~---~~~~~~~~~~-----  247 (440)
                      ....       .....+    .|..       ....+.+++++. +|++++.|+.|++||+.   +++....+..     
T Consensus        99 ~~~~-------~~~~~~----~h~~-------~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~  159 (437)
T 3gre_A           99 GEVY-------SSSLTY----DCSS-------TVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK  159 (437)
T ss_dssp             TCCC-------SCSEEE----ECSS-------CEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             Cccc-------ceeeec----cCCC-------CEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence            0000       000000    1111       122344567777 99999999999999994   5555443322     


Q ss_pred             -------CCCcccEEE--ecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec--cccceEEEEEcCCCCEEEE
Q 013578          248 -------NQLKNNMAA--ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG--HKSAVTWLCFAPNSEQIIT  316 (440)
Q Consensus       248 -------~~~~v~~~~--~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s  316 (440)
                             +...+.++.  +++++++|++|+.||.|++||++..+        .+..+.+  |.+.|++++|+|++.+|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~v~~~~~s~~~~~l~s  231 (437)
T 3gre_A          160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE--------RLQIIENSPRHGAVSSICIDEECCVLIL  231 (437)
T ss_dssp             EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC--------EEEEEECCGGGCCEEEEEECTTSCEEEE
T ss_pred             EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--------eeEEEccCCCCCceEEEEECCCCCEEEE
Confidence                   334455555  56789999999999999999997655        5667777  8999999999999999999


Q ss_pred             EeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE----eCCCCCEEEEec-CCEEEEEEcCCccchhh
Q 013578          317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS----LSSDGKILAATH-GSTLQWLSVETGKVLDT  391 (440)
Q Consensus       317 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~  391 (440)
                      ++.||.|++||++++..+..       +      ...+...|.+++    |++++.+|++++ |+.|++||+.+++.+..
T Consensus       232 ~~~dg~i~iwd~~~~~~~~~-------~------~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  298 (437)
T 3gre_A          232 GTTRGIIDIWDIRFNVLIRS-------W------SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYA  298 (437)
T ss_dssp             EETTSCEEEEETTTTEEEEE-------E------BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEE
T ss_pred             EcCCCeEEEEEcCCccEEEE-------E------ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEE
Confidence            99999999999986543311       0      013345688894    456788998876 89999999998886655


Q ss_pred             hh-----------------------cc--ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          392 AE-----------------------KA--HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       392 ~~-----------------------~~--h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      +.                       .+  |...|++++|+ ++        .+|++|+.||.|++||+.++++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~--------~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          299 FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND--------KILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT--------EEEEEEGGGTEEEEEETTCGGG
T ss_pred             EEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc--------eEEEecCCCCeEEEEECCCccc
Confidence            42                       11  66778888998 55        7999999999999999988763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-30  Score=232.08  Aligned_cols=234  Identities=18%  Similarity=0.237  Sum_probs=188.1

Q ss_pred             CCCCCCCCCCcccCccc------cccccccCcceeEEEEccC--CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578           67 SHSHGDKDQNKRHHPLD------VNTLKGHGDSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG  138 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~~------~~~l~~H~~~V~~l~~s~d--g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~  138 (440)
                      ..+++..++.+++|...      +..+.+|.+.|++++|+++  +++|++|+.||.|++||+.++..   ........|.
T Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~  101 (379)
T 3jrp_A           25 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW---SQIAVHAVHS  101 (379)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE---EEEEEECCCS
T ss_pred             EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce---eEeeeecCCC
Confidence            34566678888888653      5678899999999999987  99999999999999999987642   2344555677


Q ss_pred             CCCceEEEccC--CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578          139 GPPTAVAFADN--ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA  216 (440)
Q Consensus       139 ~~v~~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (440)
                      ..|.+++|+|+  +.                                                                 
T Consensus       102 ~~v~~~~~~~~~~~~-----------------------------------------------------------------  116 (379)
T 3jrp_A          102 ASVNSVQWAPHEYGP-----------------------------------------------------------------  116 (379)
T ss_dssp             SCEEEEEECCGGGCS-----------------------------------------------------------------
T ss_pred             cceEEEEeCCCCCCC-----------------------------------------------------------------
Confidence            88999999886  33                                                                 


Q ss_pred             CCCeEEEEeeCCceEEEEeCCCCc--eeeeeeCCCCcccEEEecC-------------CCCeEEEEecCCCEEEEEeEec
Q 013578          217 DGSTIIASCSEGTDISIWHGKTGK--LLGNVDTNQLKNNMAAISP-------------NGRFLAAAAFTADVKVWEIVYS  281 (440)
Q Consensus       217 ~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~-------------~~~~l~~~~~dg~i~i~d~~~~  281 (440)
                          ++++++.|+.|++||+.++.  ....+..|...+.+++|+|             ++++|++++.||.|++||++..
T Consensus       117 ----~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  192 (379)
T 3jrp_A          117 ----LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD  192 (379)
T ss_dssp             ----EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT
T ss_pred             ----EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC
Confidence                78888999999999998873  3455678889999999999             6999999999999999999865


Q ss_pred             CCCceeeeeeeeeeeccccceEEEEEcCC---CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeee
Q 013578          282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPN---SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY  358 (440)
Q Consensus       282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  358 (440)
                      .    ........+.+|...|.+++|+|+   +.+|++++.||.|++||+++....         ..........+...|
T Consensus       193 ~----~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~v  259 (379)
T 3jrp_A          193 A----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP---------WKKTLLKEEKFPDVL  259 (379)
T ss_dssp             T----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC---------CEEEESSSSCCSSCE
T ss_pred             C----cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc---------ceeeeeccccCCCcE
Confidence            4    233356678889999999999999   899999999999999999865311         001122233456678


Q ss_pred             eeEEeCCCCCEEEEe-cCCEEEEEEcCC
Q 013578          359 DRLSLSSDGKILAAT-HGSTLQWLSVET  385 (440)
Q Consensus       359 ~~~~~s~~g~~l~~~-~~~~i~i~d~~~  385 (440)
                      .+++|+|+|++|+++ .|+.|++|++..
T Consensus       260 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          260 WRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            999999999999876 489999999873

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.98  E-value=6.1e-31  Score=236.01  Aligned_cols=258  Identities=16%  Similarity=0.128  Sum_probs=182.9

Q ss_pred             CCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578          137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA  216 (440)
Q Consensus       137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (440)
                      +.++|.+++|+|++++|++++.+   ..+.+|+......    ..          ......|...+       ..+.++|
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d---~~i~iw~~~~~~~----~~----------~~~~~~h~~~v-------~~~~~s~   65 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTAT---NQVELYEQDGNGW----KH----------ARTFSDHDKIV-------TCVDWAP   65 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSS---SCBCEEEEETTEE----EE----------CCCBCCCSSCE-------EEEEECT
T ss_pred             CCCcEEEEEECCCCCEEEEecCC---CEEEEEEccCCce----EE----------EEEEecCCceE-------EEEEEeC
Confidence            44789999999999999998776   3455555443200    00          00011122211       2233478


Q ss_pred             CCCeEEEEeeCCceEEEEeCCCCc---eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578          217 DGSTIIASCSEGTDISIWHGKTGK---LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       217 ~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      +++ +|++++.|+.|++||+.+++   ....+..|...+.+++|+|++++|++++.|+.|++||++....     .....
T Consensus        66 ~~~-~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~  139 (377)
T 3dwl_C           66 KSN-RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND-----WWVSK  139 (377)
T ss_dssp             TTC-CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----------CCCCE
T ss_pred             CCC-EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc-----ceeee
Confidence            877 89999999999999999877   6677778999999999999999999999999999999976541     11345


Q ss_pred             eeec-cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccc----cccccccCCCCCeeeeeeEEeCCCCC
Q 013578          294 QLKG-HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLK----VLPIPLLDSNGATLQYDRLSLSSDGK  368 (440)
Q Consensus       294 ~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~g~  368 (440)
                      .+.+ |...|.+++|+|++++|++++.|+.|++||++.............    ......... +|...|.+++|+|+++
T Consensus       140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~  218 (377)
T 3dwl_C          140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN  218 (377)
T ss_dssp             EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred             EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence            6666 999999999999999999999999999999975432111000000    001111222 6677799999999999


Q ss_pred             EEEEec-CCEEEEEEcCCccc----hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          369 ILAATH-GSTLQWLSVETGKV----LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       369 ~l~~~~-~~~i~i~d~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      +|++++ |+.|++||+.+++.    +..+ .+|...|.+++|+|++        .+|++|+.|+.+ +|+..
T Consensus       219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~--------~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          219 ALAYAGHDSSVTIAYPSAPEQPPRALITV-KLSQLPLRSLLWANES--------AIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CEEEEETTTEEC-CEECSTTSCEEECCCE-ECSSSCEEEEEEEETT--------EEEEEESSSSEE-EECCC
T ss_pred             EEEEEeCCCcEEEEECCCCCCcceeeEee-cCCCCceEEEEEcCCC--------CEEEEEcCCcEE-EEEeC
Confidence            999865 89999999999987    6777 5899999999999998        889888866655 66654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.98  E-value=4e-31  Score=236.15  Aligned_cols=274  Identities=13%  Similarity=0.201  Sum_probs=198.6

Q ss_pred             CCCCcccCccc----cccccc-----cCcceeEEEEccC----CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC
Q 013578           73 KDQNKRHHPLD----VNTLKG-----HGDSVTGLCFSSD----GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG  139 (440)
Q Consensus        73 ~~~~~~~~~~~----~~~l~~-----H~~~V~~l~~s~d----g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~  139 (440)
                      .++.+++|...    +..+..     |.+.|++++|+|+    |++|++|+.||.|++||+.++.     .......|..
T Consensus        42 ~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~~  116 (366)
T 3k26_A           42 GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-----CIKHYVGHGN  116 (366)
T ss_dssp             ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-----EEEEEESCCS
T ss_pred             CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-----EeeeecCCCC
Confidence            34456666442    333443     6688999999999    6799999999999999998764     3344457889


Q ss_pred             CCceEEEcc-CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          140 PPTAVAFAD-NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       140 ~v~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      .|.+++|+| ++..+++++.+   ..+.+|+.........             +.....+...+       ..+.+++++
T Consensus       117 ~i~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~-------------~~~~~~~~~~v-------~~~~~~~~~  173 (366)
T 3k26_A          117 AINELKFHPRDPNLLLSVSKD---HALRLWNIQTDTLVAI-------------FGGVEGHRDEV-------LSADYDLLG  173 (366)
T ss_dssp             CEEEEEECSSCTTEEEEEETT---SCEEEEETTTTEEEEE-------------ECSTTSCSSCE-------EEEEECTTS
T ss_pred             cEEEEEECCCCCCEEEEEeCC---CeEEEEEeecCeEEEE-------------ecccccccCce-------eEEEECCCC
Confidence            999999999 88999998877   4677777654321111             00001111111       223347778


Q ss_pred             CeEEEEeeCCceEEEEeCCCCceeeeeeC----------------------------CCCcccEEEecCCCCeEEEEecC
Q 013578          219 STIIASCSEGTDISIWHGKTGKLLGNVDT----------------------------NQLKNNMAAISPNGRFLAAAAFT  270 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----------------------------~~~~v~~~~~s~~~~~l~~~~~d  270 (440)
                      . ++++++.|+.|++||+++++....+..                            |...|.+++|+  +++|++++.|
T Consensus       174 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  250 (366)
T 3k26_A          174 E-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE  250 (366)
T ss_dssp             S-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred             C-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence            7 899999999999999998765544433                            88899999998  7899999999


Q ss_pred             CCEEEEEeEecCCC------ceeeeeeeeeeeccccceEEEEEcCC--CCEEEEEeCCCcEEEEecCccccccCCCCccc
Q 013578          271 ADVKVWEIVYSKDG------LVKAVTSVMQLKGHKSAVTWLCFAPN--SEQIITASKDGTLRVWNINVRYHLDEDPKTLK  342 (440)
Q Consensus       271 g~i~i~d~~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  342 (440)
                      |.|++||++.....      .......+..+.+|...|.+++|+|+  +++|++++.||.|++||++++.....      
T Consensus       251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------  324 (366)
T 3k26_A          251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA------  324 (366)
T ss_dssp             SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC------
T ss_pred             CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc------
Confidence            99999998765421      01122356778889999999999999  99999999999999999987643211      


Q ss_pred             cccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578          343 VLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET  385 (440)
Q Consensus       343 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~  385 (440)
                        .........+...|.+++|+|++++|++++ |+.|++||+.+
T Consensus       325 --~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          325 --KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             --EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             --cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence              000112222356799999999999999865 89999999853

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-30  Score=227.96  Aligned_cols=266  Identities=14%  Similarity=0.196  Sum_probs=203.3

Q ss_pred             CCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578           68 HSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA  143 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~  143 (440)
                      ..++..++.++.|..    ....+.+|.+.|.+++|+|++++|++|+.||.|++|++......  ........|...|.+
T Consensus        32 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--~~~~~~~~~~~~i~~  109 (313)
T 3odt_A           32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE--DPLYTLIGHQGNVCS  109 (313)
T ss_dssp             EEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS--CC-CEECCCSSCEEE
T ss_pred             EEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC--CcccchhhcccCEEE
Confidence            466677888888865    35667889999999999999999999999999999999865432  223445678889999


Q ss_pred             EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC-CCCeEE
Q 013578          144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA-DGSTII  222 (440)
Q Consensus       144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l  222 (440)
                      ++|  +++.+++++.+   ..+.+|+.......                  ...+......       +.+.+ ++. ++
T Consensus       110 ~~~--~~~~l~~~~~d---~~i~~~d~~~~~~~------------------~~~~~~~v~~-------~~~~~~~~~-~l  158 (313)
T 3odt_A          110 LSF--QDGVVISGSWD---KTAKVWKEGSLVYN------------------LQAHNASVWD-------AKVVSFSEN-KF  158 (313)
T ss_dssp             EEE--ETTEEEEEETT---SEEEEEETTEEEEE------------------EECCSSCEEE-------EEEEETTTT-EE
T ss_pred             EEe--cCCEEEEEeCC---CCEEEEcCCcEEEe------------------cccCCCceeE-------EEEccCCCC-EE
Confidence            999  57788888877   46777762222110                  0111111111       11233 555 89


Q ss_pred             EEeeCCceEEEEeCCCCceeeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578          223 ASCSEGTDISIWHGKTGKLLGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA  301 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~  301 (440)
                      ++++.|+.|++||  .++....+.. +...+.+++|+|++. +++++.||.|++||++.++        .+..+.+|...
T Consensus       159 ~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~  227 (313)
T 3odt_A          159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD--------VLRTYEGHESF  227 (313)
T ss_dssp             EEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC--------EEEEEECCSSC
T ss_pred             EEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh--------hhhhhhcCCce
Confidence            9999999999999  4566666666 888999999999998 9999999999999997654        67778899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEE
Q 013578          302 VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWL  381 (440)
Q Consensus       302 v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~  381 (440)
                      |.+++|+|++ .|++++.||.|++||++++....              ....+...|.+++|+|++++++++.|+.|++|
T Consensus       228 i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~--------------~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw  292 (313)
T 3odt_A          228 VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ--------------VITLPAISIWSVDCMSNGDIIVGSSDNLVRIF  292 (313)
T ss_dssp             EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEE--------------EEECSSSCEEEEEECTTSCEEEEETTSCEEEE
T ss_pred             EEEEEEecCC-CEEEEecCCEEEEEECCCCceeE--------------EEeccCceEEEEEEccCCCEEEEeCCCcEEEE
Confidence            9999999999 69999999999999998764321              11233456899999999998888889999999


Q ss_pred             EcCCccchhhh
Q 013578          382 SVETGKVLDTA  392 (440)
Q Consensus       382 d~~~~~~~~~~  392 (440)
                      |+.+++.....
T Consensus       293 ~~~~~~~~~~~  303 (313)
T 3odt_A          293 SQEKSRWASED  303 (313)
T ss_dssp             ESCGGGCCC--
T ss_pred             eCCCCceeehh
Confidence            99998876654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=3.5e-30  Score=234.16  Aligned_cols=276  Identities=14%  Similarity=0.223  Sum_probs=192.4

Q ss_pred             CCCCcccCccc----cc--cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEE
Q 013578           73 KDQNKRHHPLD----VN--TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF  146 (440)
Q Consensus        73 ~~~~~~~~~~~----~~--~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~  146 (440)
                      .|.++++|+..    ++  .+.+|.+.|++|+|+|||++||+|+.||+|+|||+.++.     .......|...+.++++
T Consensus       123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----~~~~~~~h~~~v~~~s~  197 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----RLRNMTSHSARVGSLSW  197 (420)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEE
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----EEEEEeCCCCceEEEee
Confidence            36677777643    23  345788999999999999999999999999999998764     44556678788877776


Q ss_pred             ccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee
Q 013578          147 ADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS  226 (440)
Q Consensus       147 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  226 (440)
                        ++..+++++.+   ..+.+|+.......               ......|....       ....+.+++. ++++++
T Consensus       198 --~~~~l~sgs~d---~~i~~~d~~~~~~~---------------~~~~~~h~~~~-------~~~~~~~~g~-~l~s~~  249 (420)
T 4gga_A          198 --NSYILSSGSRS---GHIHHHDVRVAEHH---------------VATLSGHSQEV-------CGLRWAPDGR-HLASGG  249 (420)
T ss_dssp             --ETTEEEEEETT---SEEEEEETTSSSCE---------------EEEEECCSSCE-------EEEEECTTSS-EEEEEE
T ss_pred             --CCCEEEEEeCC---CceeEeeeccccee---------------eEEecccccce-------eeeeecCCCC-eeeeee
Confidence              56788888776   45555543322100               00011111111       2233467777 899999


Q ss_pred             CCceEEEEeCCCCc----eeeeeeCCCCcccEEEecCCCC-eEEE--EecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578          227 EGTDISIWHGKTGK----LLGNVDTNQLKNNMAAISPNGR-FLAA--AAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK  299 (440)
Q Consensus       227 ~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  299 (440)
                      .|+.|++|+..+++    .+.....+...|.+++|+|.+. ++++  |+.|+.|++||+..+.        ....+. +.
T Consensus       250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~--------~~~~~~-~~  320 (420)
T 4gga_A          250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--------CLSAVD-AH  320 (420)
T ss_dssp             TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE--------EEEEEE-CS
T ss_pred             ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc--------cceeec-cc
Confidence            99999999998765    3456677888999999999654 5554  4579999999987654        445555 44


Q ss_pred             cceEEEEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC
Q 013578          300 SAVTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS  376 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~  376 (440)
                      ..+.++.|+|++..+++++  .|+.|++||+.++.++              ....+|...|.+++|+|||++|++|+ |+
T Consensus       321 ~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v--------------~~l~gH~~~V~~l~~spdg~~l~S~s~D~  386 (420)
T 4gga_A          321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV--------------AELKGHTSRVLSLTMSPDGATVASAAADE  386 (420)
T ss_dssp             SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE--------------EEECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred             cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE--------------EEEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence            6789999999999888765  7999999999876443              22346778899999999999999865 99


Q ss_pred             EEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578          377 TLQWLSVETGKVLDTAEKAHEGEITCMAW  405 (440)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~  405 (440)
                      .|++||+.+.......+ .+...+....+
T Consensus       387 tvriWdv~~~~~~~~~~-~~~~~~~~~s~  414 (420)
T 4gga_A          387 TLRLWRCFELDPARRRE-REKASAAKSSL  414 (420)
T ss_dssp             EEEEECCSCSSCC----------------
T ss_pred             eEEEEECCCCCccchhh-hccCCcccccc
Confidence            99999998776665543 34444433333

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.2e-29  Score=232.01  Aligned_cols=290  Identities=12%  Similarity=0.084  Sum_probs=212.5

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS  164 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~  164 (440)
                      ..+..| ..+.+++|+|++.++++++.|+.|++||+.+++............|...+.+++|++++..+++++.+   ..
T Consensus       117 ~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d---~~  192 (433)
T 3bws_A          117 SRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA---NA  192 (433)
T ss_dssp             EEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG---TE
T ss_pred             EEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC---CE
Confidence            334444 45679999998888899999999999999876532111111233667789999999999988888766   56


Q ss_pred             EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee
Q 013578          165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN  244 (440)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  244 (440)
                      +.+|+.........             +   ..+.       .....+.++++++.++++++.++.|++||+.+++.+..
T Consensus       193 v~~~d~~~~~~~~~-------------~---~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~  249 (433)
T 3bws_A          193 VHVFDLKTLAYKAT-------------V---DLTG-------KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK  249 (433)
T ss_dssp             EEEEETTTCCEEEE-------------E---ECSS-------SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEECCCceEEEE-------------E---cCCC-------CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence            77776543211100             0   0001       11223445788886667777899999999999988887


Q ss_pred             eeCCCCcccEEEecCCCCeEEEEe--------cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE-E
Q 013578          245 VDTNQLKNNMAAISPNGRFLAAAA--------FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI-I  315 (440)
Q Consensus       245 ~~~~~~~v~~~~~s~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~  315 (440)
                      +..+ ..+.+++|+|++++|++++        .||.|++||+..++        ... ...|...+.+++|+|+++.+ +
T Consensus       250 ~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--------~~~-~~~~~~~~~~~~~~~~g~~l~~  319 (433)
T 3bws_A          250 TDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK--------LID-TIGPPGNKRHIVSGNTENKIYV  319 (433)
T ss_dssp             CCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--------EEE-EEEEEECEEEEEECSSTTEEEE
T ss_pred             ecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc--------EEe-eccCCCCcceEEECCCCCEEEE
Confidence            7664 4588999999999999988        48899999986543        222 23466689999999999754 6


Q ss_pred             EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec----------------CCEEE
Q 013578          316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH----------------GSTLQ  379 (440)
Q Consensus       316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----------------~~~i~  379 (440)
                      +++.|+.|++||++++.....       +        .+...+..++|+|+|++++++.                ||.|+
T Consensus       320 ~~~~~~~v~v~d~~~~~~~~~-------~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~  384 (433)
T 3bws_A          320 SDMCCSKIEVYDLKEKKVQKS-------I--------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVY  384 (433)
T ss_dssp             EETTTTEEEEEETTTTEEEEE-------E--------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred             EecCCCEEEEEECCCCcEEEE-------e--------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEE
Confidence            668999999999986543211       1        0123467899999999887754                35999


Q ss_pred             EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC-CCeEEEEeCCC
Q 013578          380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV-DKKVKLWLAPS  436 (440)
Q Consensus       380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~vw~~~~  436 (440)
                      +||..+++.+..+.  +...+.+++|+|++        ++|++++. |+.|++|+++.
T Consensus       385 ~~d~~~~~~~~~~~--~~~~~~~~~~s~dg--------~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          385 VIDTTTDTVKEFWE--AGNQPTGLDVSPDN--------RYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEETTTTEEEEEEE--CSSSEEEEEECTTS--------CEEEEEETTTTEEEEEEETT
T ss_pred             EEECCCCcEEEEec--CCCCCceEEEcCCC--------CEEEEEECCCCeEEEEEecC
Confidence            99999999888774  45679999999998        78887765 99999999874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=7.8e-30  Score=226.13  Aligned_cols=251  Identities=17%  Similarity=0.204  Sum_probs=188.7

Q ss_pred             CCCCCCCCCCcccCcc--------ccccccccCcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCc----ceeeEE
Q 013578           67 SHSHGDKDQNKRHHPL--------DVNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSK----SFKFLR  132 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~--------~~~~l~~H~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~----~~~~~~  132 (440)
                      ..+++..++.+++|..        .+..+.+|.+.|++++|+|  |+++|++|+.||+|++||+..+...    ......
T Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~  104 (351)
T 3f3f_A           25 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLC  104 (351)
T ss_dssp             EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEE
T ss_pred             EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceee
Confidence            3456677777877753        3556789999999999999  6999999999999999999876432    123445


Q ss_pred             ecCCCCCCCceEEEccC--CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccc
Q 013578          133 INLPPGGPPTAVAFADN--ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGAS  210 (440)
Q Consensus       133 ~~~~~~~~v~~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (440)
                      ....|...|.+++|+|+  +.                                                           
T Consensus       105 ~~~~~~~~v~~~~~~~~~~~~-----------------------------------------------------------  125 (351)
T 3f3f_A          105 TLNDSKGSLYSVKFAPAHLGL-----------------------------------------------------------  125 (351)
T ss_dssp             EECCCSSCEEEEEECCGGGCS-----------------------------------------------------------
T ss_pred             eecccCCceeEEEEcCCCCCc-----------------------------------------------------------
Confidence            55677888999999876  43                                                           


Q ss_pred             ccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee-------------CCCCcccEEEecCC---CCeEEEEecCCCEE
Q 013578          211 ATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD-------------TNQLKNNMAAISPN---GRFLAAAAFTADVK  274 (440)
Q Consensus       211 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------------~~~~~v~~~~~s~~---~~~l~~~~~dg~i~  274 (440)
                                ++++++.|+.|++||+++++.+..+.             .+...+.+++|+|+   +.+|++++.++.+.
T Consensus       126 ----------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~  195 (351)
T 3f3f_A          126 ----------KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII  195 (351)
T ss_dssp             ----------EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEE
T ss_pred             ----------EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEE
Confidence                      67888889999999998877654433             46778999999997   99999999999997


Q ss_pred             EEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC----CEEEEEeCCCcEEEEecCccccccCCCCcccc-------
Q 013578          275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS----EQIITASKDGTLRVWNINVRYHLDEDPKTLKV-------  343 (440)
Q Consensus       275 i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------  343 (440)
                      +|+.....      ......+.+|...|++++|+|++    .+|++++.||.|++||++..............       
T Consensus       196 ~~~~~~~~------~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  269 (351)
T 3f3f_A          196 YQRGKDGK------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS  269 (351)
T ss_dssp             EEECTTSC------EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred             EEccCCCc------eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCC
Confidence            77654332      22466778899999999999998    89999999999999999865322110000000       


Q ss_pred             -------------------------ccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhh
Q 013578          344 -------------------------LPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTA  392 (440)
Q Consensus       344 -------------------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~  392 (440)
                                               .........+|...|.+++|+|++++|++++ |+.|++|++.+++.+..+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ---------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             cccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                                     0012223345677899999999999999876 899999999988655443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.2e-29  Score=224.48  Aligned_cols=259  Identities=10%  Similarity=0.091  Sum_probs=190.0

Q ss_pred             EEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccc
Q 013578          131 LRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGAS  210 (440)
Q Consensus       131 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (440)
                      .....+|.+.|.+++|+|+++++++++.+   ..+.+|+.......             ........+..       ...
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d---~~v~iw~~~~~~~~-------------~~~~~~~~~~~-------~v~   60 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWD---GSLTVYKFDIQAKN-------------VDLLQSLRYKH-------PLL   60 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETT---SEEEEEEEETTTTE-------------EEEEEEEECSS-------CEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCC---CeEEEEEeCCCCcc-------------ccceeeeecCC-------ceE
Confidence            34455788999999999999999999877   46777765443100             00000011111       122


Q ss_pred             ccccCCCCCeEEEEeeCCceEEEEeC-CCCceeeeeeC--CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee
Q 013578          211 ATYGTADGSTIIASCSEGTDISIWHG-KTGKLLGNVDT--NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK  287 (440)
Q Consensus       211 ~~~~~~~~~~~l~s~~~d~~i~vwd~-~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  287 (440)
                      .+.++++++.++++++.|+.|++||+ .+++. ..+..  |...|.+++|+| +++|++++.|+.|++||++........
T Consensus        61 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~  138 (342)
T 1yfq_A           61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             EEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             EEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc
Confidence            23346665537889999999999999 77755 66777  899999999999 999999999999999998751100000


Q ss_pred             -eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCc-cccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578          288 -AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINV-RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS  365 (440)
Q Consensus       288 -~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  365 (440)
                       ....+..+. |...|.+++|+|++  |++++.|+.|++||+++ ....      .      ......+...+.+++|+|
T Consensus       139 ~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~------~------~~~~~~~~~~i~~i~~~~  203 (342)
T 1yfq_A          139 VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN------G------TIEESGLKYQIRDVALLP  203 (342)
T ss_dssp             EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC------C------EEEECSCSSCEEEEEECS
T ss_pred             ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc------c------eeeecCCCCceeEEEECC
Confidence             011344455 88999999999887  99999999999999986 3211      0      001123345688999999


Q ss_pred             -CCCEEEEec-CCEEEEEEcCCc------cchhhhhccccC---------CeEEEEecCCCCCCCCCcceEEEEeeCCCe
Q 013578          366 -DGKILAATH-GSTLQWLSVETG------KVLDTAEKAHEG---------EITCMAWAPKTIPMGNQQVSVLATSSVDKK  428 (440)
Q Consensus       366 -~g~~l~~~~-~~~i~i~d~~~~------~~~~~~~~~h~~---------~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~  428 (440)
                       +++++++++ ++.|++|+....      +....+ ..|..         .|.+++|+|++        .+|++++.||.
T Consensus       204 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~--------~~l~~~~~dg~  274 (342)
T 1yfq_A          204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF-RCHRLNLKDTNLAYPVNSIEFSPRH--------KFLYTAGSDGI  274 (342)
T ss_dssp             GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE-ECCCCCTTCCSSCCCEEEEEECTTT--------CCEEEEETTSC
T ss_pred             CCCCEEEEEecCCcEEEEEEcCCCcccccccceee-ecccccccccccceeEEEEEEcCCC--------CEEEEecCCce
Confidence             999988865 899999999887      555555 46654         99999999998        89999999999


Q ss_pred             EEEEeCCCCC
Q 013578          429 VKLWLAPSLE  438 (440)
Q Consensus       429 i~vw~~~~~~  438 (440)
                      |++||+.+++
T Consensus       275 i~vwd~~~~~  284 (342)
T 1yfq_A          275 ISCWNLQTRK  284 (342)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEEcCccHh
Confidence            9999998764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-30  Score=232.09  Aligned_cols=288  Identities=10%  Similarity=0.045  Sum_probs=204.7

Q ss_pred             CCCCCCCCCCCCCCcccCccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578           63 SKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT  142 (440)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~  142 (440)
                      +.-...++++.|.+++ .+...+.+.||...|++++|+|+|       .++.+.+|+.+...       .....+...|.
T Consensus        25 pDG~~iASas~D~TV~-d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-------~~~~~~~~~V~   89 (588)
T 2j04_A           25 RDGTLYLTTFPDISIG-QPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-------LLNSQPVCYPR   89 (588)
T ss_dssp             TTSCEEEECSSSEEEE-EECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-------SSTTSCSCCEE
T ss_pred             CCCCEEEEEcCCceee-cccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCce-------EeecCCCCcEE
Confidence            3344457778888888 455567778999999999999999       56666666543221       12224468899


Q ss_pred             eEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578          143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII  222 (440)
Q Consensus       143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  222 (440)
                      +++|+|+|+.|++++.+   ..+.+|+.........                   +...  ........+.++|||+ +|
T Consensus        90 ~vawSPdG~~LAs~s~d---g~V~iwd~~~~l~~l~-------------------~~~~--~~~~sv~svafSPDG~-~L  144 (588)
T 2j04_A           90 VCKPSPIDDWMAVLSNN---GNVSVFKDNKMLTNLD-------------------SKGN--LSSRTYHCFEWNPIES-SI  144 (588)
T ss_dssp             EEEECSSSSCEEEEETT---SCEEEEETTEEEEECC-------------------CSSC--STTTCEEEEEECSSSS-CE
T ss_pred             EEEECCCCCEEEEEeCC---CcEEEEeCCceeeecc-------------------CCCc--cccccEEEEEEcCCCC-EE
Confidence            99999999999999988   4566676433111100                   0000  0000112455689999 99


Q ss_pred             EEeeCCceEEEEeCCCCce-------eeee----eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578          223 ASCSEGTDISIWHGKTGKL-------LGNV----DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                      ++|+.||+|++||+.++..       +..+    .+|...|.+++|+|+|  +++++.|+.|++||+..+...     ..
T Consensus       145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~-----~~  217 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ-----PV  217 (588)
T ss_dssp             EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC-----CC
T ss_pred             EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc-----cc
Confidence            9999999999999998753       5665    5567799999999999  888899999999998654410     01


Q ss_pred             eeee-eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe--CCCCC
Q 013578          292 VMQL-KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL--SSDGK  368 (440)
Q Consensus       292 ~~~~-~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~  368 (440)
                      ...+ .+|...|.+++|+  |..||+++ +++|++||+.++...             .. ..+|...+..++|  +|++.
T Consensus       218 ~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~-------------~~-~~gh~~~V~~va~~~s~d~~  280 (588)
T 2j04_A          218 SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSIS-------------SL-KTGSLENFHIIPLNHEKEST  280 (588)
T ss_dssp             EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEE-------------EE-ECSCCSCCCEEEETTCSSCE
T ss_pred             eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEE-------------EE-EcCCCceEEEEEeeeCCCCC
Confidence            2345 3788999999999  68899887 699999999865431             01 1156777899999  99999


Q ss_pred             EEEEec-CCEEEEEEcC------Cccc-----------------hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee
Q 013578          369 ILAATH-GSTLQWLSVE------TGKV-----------------LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS  424 (440)
Q Consensus       369 ~l~~~~-~~~i~i~d~~------~~~~-----------------~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~  424 (440)
                      .++++. +|. ++|...      .+..                 +..+  .+...|.+++|+|+|        ..+|+++
T Consensus       281 ~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~--~~~~~I~~va~SPdG--------~~lA~~~  349 (588)
T 2j04_A          281 ILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNY--ETTLVIHGISLSPDG--------YSIAIVY  349 (588)
T ss_dssp             EEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSS--CCEEEEEEEEECTTS--------SEEEEEE
T ss_pred             EEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeee--ccceEEEEEEECCCC--------CEEEEEE
Confidence            999987 788 888863      1111                 1111  124459999999998        8899887


Q ss_pred             C
Q 013578          425 V  425 (440)
Q Consensus       425 ~  425 (440)
                      .
T Consensus       350 ~  350 (588)
T 2j04_A          350 D  350 (588)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.6e-29  Score=231.00  Aligned_cols=284  Identities=15%  Similarity=0.253  Sum_probs=196.4

Q ss_pred             CCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578           68 HSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA  143 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~  143 (440)
                      ..++..++.++.|+.    .+..+.+|.+.|.+++|  ++++|++|+.||+|++||+.++.     .......|...|.+
T Consensus       146 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~  218 (435)
T 1p22_A          146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-----MLNTLIHHCEAVLH  218 (435)
T ss_dssp             EEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-----EEEEECCCCSCEEE
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc-----EEEEEcCCCCcEEE
Confidence            345567788888754    46678899999999999  78999999999999999998765     34555678899999


Q ss_pred             EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578          144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA  223 (440)
Q Consensus       144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  223 (440)
                      ++|++  ..+++++.+   ..+.+|+........             .......+...+...         ..+++ +++
T Consensus       219 l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~-------------~~~~~~~~~~~v~~~---------~~~~~-~l~  270 (435)
T 1p22_A          219 LRFNN--GMMVTCSKD---RSIAVWDMASPTDIT-------------LRRVLVGHRAAVNVV---------DFDDK-YIV  270 (435)
T ss_dssp             EECCT--TEEEEEETT---SCEEEEECSSSSCCE-------------EEEEECCCSSCEEEE---------EEETT-EEE
T ss_pred             EEEcC--CEEEEeeCC---CcEEEEeCCCCCCce-------------eeeEecCCCCcEEEE---------EeCCC-EEE
Confidence            99974  588888876   466777654431110             000011111111111         11455 899


Q ss_pred             EeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578          224 SCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT  303 (440)
Q Consensus       224 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~  303 (440)
                      +++.|+.|++||+++++.+..+..|...+.++.+  +++++++|+.||.|++||++.+.        .+..+.+|...|.
T Consensus       271 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~--------~~~~~~~h~~~v~  340 (435)
T 1p22_A          271 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA--------CLRVLEGHEELVR  340 (435)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEE
T ss_pred             EEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCC--------EEEEEeCCcCcEE
Confidence            9999999999999999999999999999999988  47899999999999999997665        6778889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEE
Q 013578          304 WLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLS  382 (440)
Q Consensus       304 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d  382 (440)
                      +++|  ++.+|++|+.||.|++||+++..........     .......+|...|.+++|  ++.+|++++ ||.|++||
T Consensus       341 ~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          341 CIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGT-----LCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             EEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTT-----TEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccc-----hheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence            9999  7889999999999999999865422111100     012223456677899999  777788766 99999999


Q ss_pred             cCCccchhhhhccccCCeEEEEecC
Q 013578          383 VETGKVLDTAEKAHEGEITCMAWAP  407 (440)
Q Consensus       383 ~~~~~~~~~~~~~h~~~v~~v~~~~  407 (440)
                      +.+........  ...+..++.|.+
T Consensus       412 ~~~~~~~~~~~--~~~~~~~~~~~~  434 (435)
T 1p22_A          412 FLNDPAAQAEP--PRSPSRTYTYIS  434 (435)
T ss_dssp             -------------------------
T ss_pred             CCCCCCcccCC--CCCCccceeeec
Confidence            98877655442  334455555543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-29  Score=245.49  Aligned_cols=234  Identities=18%  Similarity=0.221  Sum_probs=190.2

Q ss_pred             CCCCCCCCCCcccCcc------ccccccccCcceeEEEEccC--CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578           67 SHSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG  138 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~d--g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~  138 (440)
                      ...++..++.++.|..      .+..+.+|.+.|++++|+|+  +++|++|+.||+|++||+.++..   ........|.
T Consensus        23 ~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~---~~~~~~~~h~   99 (753)
T 3jro_A           23 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW---SQIAVHAVHS   99 (753)
T ss_dssp             CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE---EEEEEECCCS
T ss_pred             eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc---cccccccCCC
Confidence            3566777888888864      36678899999999999988  99999999999999999987532   2345556788


Q ss_pred             CCCceEEEccC--CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578          139 GPPTAVAFADN--ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA  216 (440)
Q Consensus       139 ~~v~~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (440)
                      ..|.+++|+|+  +.                                                                 
T Consensus       100 ~~V~~v~~sp~~~~~-----------------------------------------------------------------  114 (753)
T 3jro_A          100 ASVNSVQWAPHEYGP-----------------------------------------------------------------  114 (753)
T ss_dssp             SCEEEEEECCGGGCS-----------------------------------------------------------------
T ss_pred             CCeEEEEECCCCCCC-----------------------------------------------------------------
Confidence            89999999887  33                                                                 


Q ss_pred             CCCeEEEEeeCCceEEEEeCCCCc--eeeeeeCCCCcccEEEecC-------------CCCeEEEEecCCCEEEEEeEec
Q 013578          217 DGSTIIASCSEGTDISIWHGKTGK--LLGNVDTNQLKNNMAAISP-------------NGRFLAAAAFTADVKVWEIVYS  281 (440)
Q Consensus       217 ~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~-------------~~~~l~~~~~dg~i~i~d~~~~  281 (440)
                          ++++++.||.|++||+.++.  ....+..|...+.+++|+|             ++++|++|+.||.|++||++..
T Consensus       115 ----~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          115 ----LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             ----EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred             ----EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence                78888999999999998773  3455677889999999999             5899999999999999999876


Q ss_pred             CCCceeeeeeeeeeeccccceEEEEEcCC---CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeee
Q 013578          282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPN---SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY  358 (440)
Q Consensus       282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  358 (440)
                      .    ........+.+|...|++++|+|+   +.+|++++.||.|++||++++....         .........+...|
T Consensus       191 ~----~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~---------~~~~~~~~~~~~~v  257 (753)
T 3jro_A          191 A----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW---------KKTLLKEEKFPDVL  257 (753)
T ss_dssp             T----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC---------BCCBSSSSCCSSCC
T ss_pred             c----ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc---------eeEEeccCCCCCce
Confidence            4    223356678899999999999999   8999999999999999998653210         01122334456678


Q ss_pred             eeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578          359 DRLSLSSDGKILAATH-GSTLQWLSVET  385 (440)
Q Consensus       359 ~~~~~s~~g~~l~~~~-~~~i~i~d~~~  385 (440)
                      .+++|+|+|+++++++ ||.|++|++.+
T Consensus       258 ~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          258 WRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9999999999999865 89999999874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.9e-28  Score=220.88  Aligned_cols=268  Identities=12%  Similarity=0.125  Sum_probs=197.8

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccC
Q 013578          104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQS  183 (440)
Q Consensus       104 ~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (440)
                      .++++++.|+.|++||+.+++.     ......+ ..+.+++|+|+++++++++..  ...+.+|+.......       
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~-----~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--d~~i~v~d~~~~~~~-------   67 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV-----TATIPVG-SNPMGAVISPDGTKVYVANAH--SNDVSIIDTATNNVI-------   67 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE-----EEEEECS-SSEEEEEECTTSSEEEEEEGG--GTEEEEEETTTTEEE-------
T ss_pred             EEEEEcCCCCEEEEEECCCCeE-----EEEeecC-CCcceEEECCCCCEEEEECCC--CCeEEEEECCCCeEE-------
Confidence            4688899999999999987642     2222223 568999999999988655432  246777765443111       


Q ss_pred             CCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCe
Q 013578          184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF  263 (440)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  263 (440)
                                       ..+........+.++|+++.++++++.++.|++||+.+++.+..+..+. .+.+++|+|+++.
T Consensus        68 -----------------~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~  129 (391)
T 1l0q_A           68 -----------------ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKK  129 (391)
T ss_dssp             -----------------EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSE
T ss_pred             -----------------EEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCE
Confidence                             0011111233445688999666777788999999999999888877654 6789999999997


Q ss_pred             E-EEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE-EEEeCCCcEEEEecCccccccCCCCcc
Q 013578          264 L-AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI-ITASKDGTLRVWNINVRYHLDEDPKTL  341 (440)
Q Consensus       264 l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~  341 (440)
                      | ++++.++.|++||+..++        ....+..+ ..+.+++|+|++++| ++++.|+.|++||++++.....     
T Consensus       130 l~~~~~~~~~v~~~d~~~~~--------~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-----  195 (391)
T 1l0q_A          130 LYVTNNGDKTVSVINTVTKA--------VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT-----  195 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTE--------EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-----
T ss_pred             EEEEeCCCCEEEEEECCCCc--------EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE-----
Confidence            7 677789999999986543        34445544 457999999999887 5777899999999987643211     


Q ss_pred             ccccccccCCCCCeeeeeeEEeCCCCCEEEEe----cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcc
Q 013578          342 KVLPIPLLDSNGATLQYDRLSLSSDGKILAAT----HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQV  417 (440)
Q Consensus       342 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~----~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~  417 (440)
                        +        .+...+.+++|+|+|++|+++    .++.|++||+.+++.+..+. .| ..+.+++|+|++        
T Consensus       196 --~--------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~s~dg--------  255 (391)
T 1l0q_A          196 --V--------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VG-PDPAGIAVTPDG--------  255 (391)
T ss_dssp             --E--------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTS--------
T ss_pred             --E--------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe-cC-CCccEEEEccCC--------
Confidence              1        012347789999999988875    47999999999998887774 44 458999999998        


Q ss_pred             eEE-EEeeCCCeEEEEeCCCCC
Q 013578          418 SVL-ATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       418 ~~l-~t~~~Dg~i~vw~~~~~~  438 (440)
                      ++| ++++.|+.|++||+.+++
T Consensus       256 ~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          256 KKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTE
T ss_pred             CEEEEEcCCCCEEEEEECCCCc
Confidence            655 677889999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=9.7e-29  Score=224.06  Aligned_cols=312  Identities=13%  Similarity=0.121  Sum_probs=186.1

Q ss_pred             CCCCCCCCCCcccCccc----cccc-------------cccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcce
Q 013578           67 SHSHGDKDQNKRHHPLD----VNTL-------------KGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSF  128 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~~----~~~l-------------~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~  128 (440)
                      ..+++..++.+++|...    ...+             .+|.+.|.+++|+| ++.+|++++.||.|++||+.++...  
T Consensus        58 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--  135 (408)
T 4a11_B           58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA--  135 (408)
T ss_dssp             EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE--
T ss_pred             EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc--
Confidence            34566667777777553    1112             36999999999999 7889999999999999999876422  


Q ss_pred             eeEEecCCCCCCCceEEEccCCC---eEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEE
Q 013578          129 KFLRINLPPGGPPTAVAFADNAT---SIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILT  205 (440)
Q Consensus       129 ~~~~~~~~~~~~v~~v~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (440)
                         . ...+...+.++.|++.+.   .+++++.+   ..+.+|+.......             ..+   ..+...    
T Consensus       136 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~d~~~~~~~-------------~~~---~~~~~~----  188 (408)
T 4a11_B          136 ---D-VFNFEETVYSHHMSPVSTKHCLVAVGTRG---PKVQLCDLKSGSCS-------------HIL---QGHRQE----  188 (408)
T ss_dssp             ---E-EEECSSCEEEEEECSSCSSCCEEEEEESS---SSEEEEESSSSCCC-------------EEE---CCCCSC----
T ss_pred             ---e-eccCCCceeeeEeecCCCCCcEEEEEcCC---CeEEEEeCCCccee-------------eee---cCCCCc----
Confidence               1 122557889999998544   78888766   45666665433111             000   111111    


Q ss_pred             eecccccccCCCCCeEEEEeeCCceEEEEeCCCCc-eeeee---------------eCCCCcccEEEecCCCCeEEEEec
Q 013578          206 LFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-LLGNV---------------DTNQLKNNMAAISPNGRFLAAAAF  269 (440)
Q Consensus       206 ~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~---------------~~~~~~v~~~~~s~~~~~l~~~~~  269 (440)
                         ...+.++|++..++++++.|+.|++||++++. .+..+               ..|...+.+++|+|++++|++++.
T Consensus       189 ---v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  265 (408)
T 4a11_B          189 ---ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT  265 (408)
T ss_dssp             ---EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred             ---EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence               22334578888679999999999999998765 33333               467788999999999999999999


Q ss_pred             CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccccccc
Q 013578          270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLL  349 (440)
Q Consensus       270 dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  349 (440)
                      ||.|++||+..+......   ...........+........+..+++++.|+.|++||+.++..+              .
T Consensus       266 dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--------------~  328 (408)
T 4a11_B          266 DNRMRLWNSSNGENTLVN---YGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI--------------T  328 (408)
T ss_dssp             TSCEEEEETTTCCBCCCC---CCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE--------------E
T ss_pred             CCeEEEEECCCCccceec---cccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce--------------e
Confidence            999999998765411000   00000111122222222334556777888999999999876433              1


Q ss_pred             CCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe
Q 013578          350 DSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK  428 (440)
Q Consensus       350 ~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~  428 (440)
                      ...+|...|.+++|+|++++|++++ ||.|++||+.+++.+.... .+.   ....+.+..       ...+.+++.|+.
T Consensus       329 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~---~~~~~~~~~-------~~~~~~~~~~~~  397 (408)
T 4a11_B          329 MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD-ETT---TKSQLNPAF-------EDAWSSSDEEGG  397 (408)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred             eeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC-ceE---ecccccccc-------ceeecccCccCc
Confidence            2235667799999999999999876 8999999999998876553 222   112333322       145667788999


Q ss_pred             EEEEeCCCCC
Q 013578          429 VKLWLAPSLE  438 (440)
Q Consensus       429 i~vw~~~~~~  438 (440)
                      +++|+.+..+
T Consensus       398 ~~~W~~~~~~  407 (408)
T 4a11_B          398 TSAWSHPQFE  407 (408)
T ss_dssp             ----------
T ss_pred             eeecCCcccC
Confidence            9999987643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=4.4e-28  Score=212.07  Aligned_cols=260  Identities=14%  Similarity=0.210  Sum_probs=184.6

Q ss_pred             CCCCCcccCccc----ccc--ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578           72 DKDQNKRHHPLD----VNT--LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA  145 (440)
Q Consensus        72 ~~~~~~~~~~~~----~~~--l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~  145 (440)
                      ..|+++++|+..    ++.  +.+|...|++++|+|+|++|++|+.||+|++|++.+++     .......|...+.  +
T Consensus        42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----~~~~~~~h~~~~~--~  114 (318)
T 4ggc_A           42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----RLRNMTSHSARVG--S  114 (318)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEE--E
T ss_pred             EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----eEEEecCccceEE--E
Confidence            357888888653    333  45788899999999999999999999999999998764     3344455655554  4


Q ss_pred             EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578          146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC  225 (440)
Q Consensus       146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  225 (440)
                      +++++..+++++.++   .+.++.......               .......+....       ....+.+++. +++++
T Consensus       115 ~~~~~~~l~s~~~~~---~~~~~~~~~~~~---------------~~~~~~~~~~~~-------~~~~~~~~~~-~l~s~  168 (318)
T 4ggc_A          115 LSWNSYILSSGSRSG---HIHHHDVRVAEH---------------HVATLSGHSQEV-------CGLRWAPDGR-HLASG  168 (318)
T ss_dssp             EEEETTEEEEEETTS---EEEEEETTSSSC---------------EEEEEECCSSCE-------EEEEECTTSS-EEEEE
T ss_pred             eecCCCEEEEEecCC---ceEeeecCCCce---------------eEEEEcCccCce-------EEEEEcCCCC-EEEEE
Confidence            555677888877663   333333222100               000011111111       1223356777 89999


Q ss_pred             eCCceEEEEeCCCCce----eeeeeCCCCcccEEEecCCCCeE---EEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          226 SEGTDISIWHGKTGKL----LGNVDTNQLKNNMAAISPNGRFL---AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       226 ~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      +.|+.|++||+.+++.    ......+...+.+++++|++..+   ++++.++.|++||.....         ......+
T Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~---------~~~~~~~  239 (318)
T 4ggc_A          169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---------CLSAVDA  239 (318)
T ss_dssp             ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC---------EEEEEEC
T ss_pred             ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc---------ccccccc
Confidence            9999999999987653    34445667789999999976543   356778999999976543         2233457


Q ss_pred             ccceEEEEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578          299 KSAVTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G  375 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~  375 (440)
                      ...+..+.|+|++..+++++  .|+.|++||++++..+              ....+|...|++++|+|+|++|++|+ |
T Consensus       240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~--------------~~l~gH~~~V~~l~~spdg~~l~S~s~D  305 (318)
T 4ggc_A          240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV--------------AELKGHTSRVLSLTMSPDGATVASAAAD  305 (318)
T ss_dssp             SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE--------------EEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE--------------EEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            78899999999999887665  7999999999876543              12346778899999999999999865 9


Q ss_pred             CEEEEEEcCCcc
Q 013578          376 STLQWLSVETGK  387 (440)
Q Consensus       376 ~~i~i~d~~~~~  387 (440)
                      +.|++||+.+..
T Consensus       306 ~~v~iWd~~~~d  317 (318)
T 4ggc_A          306 ETLRLWRCFELD  317 (318)
T ss_dssp             TEEEEECCSCCC
T ss_pred             CeEEEEECCCCC
Confidence            999999987653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=4.4e-28  Score=214.80  Aligned_cols=251  Identities=10%  Similarity=0.103  Sum_probs=172.4

Q ss_pred             ecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccc
Q 013578          133 INLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASAT  212 (440)
Q Consensus       133 ~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (440)
                      ....|...|.+++|+|++++|++++.+    .+.+|+.........                         ....+....
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~----~~~iw~~~~~~~~~~-------------------------~~~~~~~~~   64 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLK----SFEIYNVHPVAHIMS-------------------------QEMRHLSKV   64 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSS----EEEEEEETTEEEEEE-------------------------EECSCCCEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCC----EEEEEecCCcceeee-------------------------eecCCeEEE
Confidence            335678999999999999999988765    245665433211000                         000011122


Q ss_pred             ccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEec-CCCceeeeee
Q 013578          213 YGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS-KDGLVKAVTS  291 (440)
Q Consensus       213 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~  291 (440)
                      .+.++++.++++++.|++|++||..+++.+..+.. ...+.++.++++.  ++++ .++.|++||+... +        .
T Consensus        65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~--------~  132 (355)
T 3vu4_A           65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-DAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWK--------R  132 (355)
T ss_dssp             EECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCC--------B
T ss_pred             EEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC-CCceEEEEEcCCE--EEEE-EcCEEEEEECCCCce--------e
Confidence            23455664667888899999999999999988874 5689999998764  4444 4789999998765 2        2


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEE--EeCCCcEEEEecCccccccCCCCcccc-cccc-ccCCCCCeeeeeeEEeCCCC
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIIT--ASKDGTLRVWNINVRYHLDEDPKTLKV-LPIP-LLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~v~~~~~s~~g  367 (440)
                      +..+..   +...+++++  .+++.  |+.||.|++||++++............ ...+ .....+|...|.+++|+|+|
T Consensus       133 ~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g  207 (355)
T 3vu4_A          133 ITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS  207 (355)
T ss_dssp             SSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred             eEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence            333332   344566676  56665  578999999999875422111000000 0001 23345778889999999999


Q ss_pred             CEEEEec-CCE-EEEEEcCCccchhhhhcc-ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          368 KILAATH-GST-LQWLSVETGKVLDTAEKA-HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       368 ~~l~~~~-~~~-i~i~d~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ++|++|+ |+. |++||+.+++.+..+..+ |.+.|++++|+|++        .+|++++.|++|++|++...
T Consensus       208 ~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~--------~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          208 DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG--------SKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS--------CEEEEEETTCEEEEEESSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC--------CEEEEEECCCEEEEEEccCC
Confidence            9999876 887 999999999999888535 99999999999998        89999999999999999765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.1e-28  Score=224.76  Aligned_cols=230  Identities=17%  Similarity=0.275  Sum_probs=177.4

Q ss_pred             ccccccccCcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCcc--eeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKS--FKFLRINLPPGGPPTAVAFADNATSIVVATHN  159 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~  159 (440)
                      ++..+.+|...|.+++|+|++. +|++|+.||.|++|++.......  .........|...|.+++|+|++.        
T Consensus       173 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~--------  244 (430)
T 2xyi_A          173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE--------  244 (430)
T ss_dssp             CSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT--------
T ss_pred             CcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC--------
Confidence            4567889999999999999998 99999999999999998743221  111334456778899999987432        


Q ss_pred             CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578          160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG  239 (440)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  239 (440)
                                                                                  .++++++.|+.|++||++++
T Consensus       245 ------------------------------------------------------------~~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          245 ------------------------------------------------------------SLFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             ------------------------------------------------------------TEEEEEETTSEEEEEETTCS
T ss_pred             ------------------------------------------------------------CEEEEEeCCCeEEEEECCCC
Confidence                                                                        17888999999999999987


Q ss_pred             ---ceeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EE
Q 013578          240 ---KLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QI  314 (440)
Q Consensus       240 ---~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l  314 (440)
                         +.+..+..|...+++++|+|++. +|++|+.||.|++||++...       ..+..+.+|...|.+++|+|++. +|
T Consensus       265 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------~~~~~~~~h~~~v~~i~~sp~~~~~l  337 (430)
T 2xyi_A          265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-------LKLHSFESHKDEIFQVQWSPHNETIL  337 (430)
T ss_dssp             CSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------SCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred             CCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------CCeEEeecCCCCEEEEEECCCCCCEE
Confidence               56777888999999999999987 68899999999999997643       25677888999999999999985 68


Q ss_pred             EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec-CCEEEEEEcCCcc
Q 013578          315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH-GSTLQWLSVETGK  387 (440)
Q Consensus       315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~i~i~d~~~~~  387 (440)
                      ++++.|+.|++||++.......................+|...|.+++|+|+++ +|++++ |+.|++|++....
T Consensus       338 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          338 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             EEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             EEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            999999999999998632211000000000112334456677899999999999 676654 8999999987543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.2e-27  Score=215.74  Aligned_cols=309  Identities=13%  Similarity=0.154  Sum_probs=212.7

Q ss_pred             CCCCCCcccCcc----ccccccccCcceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578           71 GDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA  145 (440)
Q Consensus        71 ~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~  145 (440)
                      +..++.++.|+.    .+..+.+|. .+.+++|+|+|++| ++++.|++|++||+.+++.     .... .+...+.+++
T Consensus         8 ~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-----~~~~-~~~~~v~~~~   80 (391)
T 1l0q_A            8 NSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----IATV-PAGSSPQGVA   80 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----EEEE-ECSSSEEEEE
T ss_pred             cCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-----EEEE-ECCCCccceE
Confidence            344555666543    345566664 58999999999977 6777999999999987642     2222 2234899999


Q ss_pred             EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578          146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC  225 (440)
Q Consensus       146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  225 (440)
                      |+|+++++++++.+  ...+.+|+........                        .+........+.++++++.+++++
T Consensus        81 ~spdg~~l~~~~~~--~~~v~v~d~~~~~~~~------------------------~~~~~~~~~~~~~s~dg~~l~~~~  134 (391)
T 1l0q_A           81 VSPDGKQVYVTNMA--SSTLSVIDTTSNTVAG------------------------TVKTGKSPLGLALSPDGKKLYVTN  134 (391)
T ss_dssp             ECTTSSEEEEEETT--TTEEEEEETTTTEEEE------------------------EEECSSSEEEEEECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEECC--CCEEEEEECCCCeEEE------------------------EEeCCCCcceEEECCCCCEEEEEe
Confidence            99999998877644  2467777655431110                        011111223445688998666889


Q ss_pred             eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeE-EEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578          226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFL-AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW  304 (440)
Q Consensus       226 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (440)
                      +.++.|++||+.+++.+..+..+. .+.+++|+|+++.| ++++.++.|++||++.+.        ....+. +...+.+
T Consensus       135 ~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~--------~~~~~~-~~~~~~~  204 (391)
T 1l0q_A          135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS--------VIDTVK-VEAAPSG  204 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--------EEEEEE-CSSEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe--------EEEEEe-cCCCccc
Confidence            999999999999999888887654 46899999999987 566788999999986543        333333 5668899


Q ss_pred             EEEcCCCCEEEEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE-Ee-cCCEEE
Q 013578          305 LCFAPNSEQIITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-AT-HGSTLQ  379 (440)
Q Consensus       305 ~~~~p~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~-~~~~i~  379 (440)
                      ++|+|++++|++++   .++.|++||++++..+.       .+.       .+ ..+.+++|+|+|++|+ ++ .++.|+
T Consensus       205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~-------~~~-------~~-~~~~~~~~s~dg~~l~~s~~~d~~v~  269 (391)
T 1l0q_A          205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA-------RIP-------VG-PDPAGIAVTPDGKKVYVALSFXNTVS  269 (391)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE-------EEE-------CC-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE-------EEe-------cC-CCccEEEEccCCCEEEEEcCCCCEEE
Confidence            99999999998888   68999999998664321       111       11 1256899999999774 44 489999


Q ss_pred             EEEcCCccchhhhhccccCCeE---EEEecCCCCCCC---------C-----CcceEEEEeeCCCeEEEEeCCCCC
Q 013578          380 WLSVETGKVLDTAEKAHEGEIT---CMAWAPKTIPMG---------N-----QQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       380 i~d~~~~~~~~~~~~~h~~~v~---~v~~~~~~~~~~---------~-----~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +||+.+++.+..+. .|..+..   .+.+.|++....         .     .+...+...+.|..+++|++..+.
T Consensus       270 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~  344 (391)
T 1l0q_A          270 VIDTATNTITATMA-VGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS  344 (391)
T ss_dssp             EEETTTTEEEEEEE-CSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred             EEECCCCcEEEEEE-CCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence            99999998877763 4433221   133333221100         0     011346677789999999997765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.2e-28  Score=221.59  Aligned_cols=212  Identities=13%  Similarity=0.157  Sum_probs=142.7

Q ss_pred             CeEEEEeeCCceEEEEeCCCCcee-----eeeeCCCCcccEEEecC--------CCCeEEEEecCCCEEEEEeEecCCCc
Q 013578          219 STIIASCSEGTDISIWHGKTGKLL-----GNVDTNQLKNNMAAISP--------NGRFLAAAAFTADVKVWEIVYSKDGL  285 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~i~d~~~~~~~~  285 (440)
                      ..++++++.|++|++||..+++..     ..+.+|...|.+++|+|        ++++|++|+.|++|+|||+....   
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~---  177 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG---  177 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE---
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc---
Confidence            338999999999999999887643     34678999999999998        88999999999999999997654   


Q ss_pred             eeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCcccc-----------ccccccCCCC
Q 013578          286 VKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKV-----------LPIPLLDSNG  353 (440)
Q Consensus       286 ~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~  353 (440)
                           ....+.+|..+|.+++|+|++. +|++++.|++|++||++++............           .........+
T Consensus       178 -----~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  252 (393)
T 4gq1_A          178 -----PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG  252 (393)
T ss_dssp             -----EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred             -----eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence                 5666778999999999999875 7999999999999999877554321111000           0011122345


Q ss_pred             CeeeeeeEEeC-CCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCC------------CCCcceE
Q 013578          354 ATLQYDRLSLS-SDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPM------------GNQQVSV  419 (440)
Q Consensus       354 ~~~~v~~~~~s-~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~------------~~~~~~~  419 (440)
                      +...+.++.|+ ++++.++++. |+.+++||+.+++....+ ..|...+..+.+.|+....            +.....+
T Consensus       253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (393)
T 4gq1_A          253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI-SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF  331 (393)
T ss_dssp             CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred             ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE-eeecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence            66678888886 8999988876 899999999998877776 3676666666666542100            0012257


Q ss_pred             EEEeeCCCeEEEEeCCCCCC
Q 013578          420 LATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       420 l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      +++|+.||+|++||+.++++
T Consensus       332 ~~sgs~Dg~V~lwd~~~~~~  351 (393)
T 4gq1_A          332 ATAHSQHGLIQLINTYEKDS  351 (393)
T ss_dssp             EEEETTTTEEEEEETTCTTC
T ss_pred             EEEECCCCEEEEEECCCCcE
Confidence            78889999999999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.4e-28  Score=220.51  Aligned_cols=200  Identities=16%  Similarity=0.110  Sum_probs=163.3

Q ss_pred             ccccccCCCCCeEEEEeeCCceEEEEeCC--CCceeeeee--CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCC
Q 013578          209 ASATYGTADGSTIIASCSEGTDISIWHGK--TGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDG  284 (440)
Q Consensus       209 ~~~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  284 (440)
                      ..++.++|+++.++++++.|+.|++||+.  +++.+..+.  .+...+.+++|+|++++|++|+.+|.|++|++......
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~  184 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEE  184 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCS
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccc
Confidence            34456789999556999999999999999  888887776  45678999999999999999999999999998655411


Q ss_pred             ceeeeeeeeeeeccccceEEEEEcCC---CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE
Q 013578          285 LVKAVTSVMQLKGHKSAVTWLCFAPN---SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL  361 (440)
Q Consensus       285 ~~~~~~~~~~~~~h~~~v~~~~~~p~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  361 (440)
                      .    .....+.+|...|.+++|+|+   +++|++++.|+.|++||++++..+..             ...+|...|.++
T Consensus       185 ~----~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-------------~~~~h~~~v~~~  247 (450)
T 2vdu_B          185 K----FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK-------------WLFGHKHFVSSI  247 (450)
T ss_dssp             S----CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE-------------ECCCCSSCEEEE
T ss_pred             c----ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee-------------eecCCCCceEEE
Confidence            0    023367789999999999999   99999999999999999986543211             123566779999


Q ss_pred             EeCCCCCEEEEec-CCEEEEEEcCCccchhhhhc------------------------cccCCeEEEEecCCCCCCCCCc
Q 013578          362 SLSSDGKILAATH-GSTLQWLSVETGKVLDTAEK------------------------AHEGEITCMAWAPKTIPMGNQQ  416 (440)
Q Consensus       362 ~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~------------------------~h~~~v~~v~~~~~~~~~~~~~  416 (440)
                      +|+ ++++|++++ |+.|++||+.+++.+..+..                        .+...|.+++|+|++       
T Consensus       248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-------  319 (450)
T 2vdu_B          248 CCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-------  319 (450)
T ss_dssp             EEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-------
T ss_pred             EEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-------
Confidence            999 999999876 89999999999987666531                        223579999999998       


Q ss_pred             ceEEEEee-CCCeEEEEeC
Q 013578          417 VSVLATSS-VDKKVKLWLA  434 (440)
Q Consensus       417 ~~~l~t~~-~Dg~i~vw~~  434 (440)
                       ++|++++ .|+.|++|++
T Consensus       320 -~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          320 -PFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             -SEEEEEETTCSEEEEEEE
T ss_pred             -CEEEEEECCCCeEEEEEe
Confidence             7898888 8999999999

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.6e-27  Score=210.66  Aligned_cols=231  Identities=9%  Similarity=0.002  Sum_probs=168.8

Q ss_pred             EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578          146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC  225 (440)
Q Consensus       146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  225 (440)
                      +.+++..+++++.|   ..+.+|+.........                        +. ......+.+.|+    ++++
T Consensus        44 ~~~d~~~l~sg~~D---g~v~iwd~~~~~~~~~------------------------~~-~~~v~~~~~~~~----~~s~   91 (343)
T 3lrv_A           44 MYYDKWVCMCRCED---GALHFTQLKDSKTITT------------------------IT-TPNPRTGGEHPA----IISR   91 (343)
T ss_dssp             SSEEEEEEEEEEET---TEEEEEEESSSSCEEE------------------------EE-EECCCTTCCCCS----EEEE
T ss_pred             hcCCCCEEEEECCC---CcEEEEECCCCcEEEE------------------------Ee-cCCceeeeeCCc----eEEe
Confidence            44678889999888   5677776544311100                        00 112223333444    8999


Q ss_pred             eCCceEEEEeCC---------CCceeeeee-CCCCcccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578          226 SEGTDISIWHGK---------TGKLLGNVD-TNQLKNNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       226 ~~d~~i~vwd~~---------~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      +.|++|++|+..         +++.+..+. .|...|.+++|+|  ++++|++++.||.|++||++.+.        ...
T Consensus        92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--------~~~  163 (343)
T 3lrv_A           92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS--------QYI  163 (343)
T ss_dssp             CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC--------EEE
T ss_pred             cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc--------EEE
Confidence            999999999655         555454444 5567899999999  99999999999999999997654        333


Q ss_pred             ee-eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCC-CCeeeeeeEEeCCCCCEEE
Q 013578          294 QL-KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN-GATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       294 ~~-~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~  371 (440)
                      .. ..|...|.+++|+|++.+|++|+.||.|++||++++....      .       ... +|...|.+++|+|+|.+|+
T Consensus       164 ~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~------~-------~~~~~h~~~v~~l~fs~~g~~l~  230 (343)
T 3lrv_A          164 VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS------S-------RFPVDEEAKIKEVKFADNGYWMV  230 (343)
T ss_dssp             EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC------E-------ECCCCTTSCEEEEEECTTSSEEE
T ss_pred             EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc------c-------EEeccCCCCEEEEEEeCCCCEEE
Confidence            33 3355689999999999999999999999999999764320      0       112 2567799999999999999


Q ss_pred             EecCCEEEEEEcCCccchhhhhc--cccCCeE--EEEecCCCCCCCCCcceEEEEeeC-CCeEEEEeCCCC
Q 013578          372 ATHGSTLQWLSVETGKVLDTAEK--AHEGEIT--CMAWAPKTIPMGNQQVSVLATSSV-DKKVKLWLAPSL  437 (440)
Q Consensus       372 ~~~~~~i~i~d~~~~~~~~~~~~--~h~~~v~--~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~vw~~~~~  437 (440)
                      +++++.|++||+++++.+..+..  .|...+.  +++|+|++        .+|++++. |+.|+||++...
T Consensus       231 s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          231 VECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG--------KNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             EEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS--------SEEEEEETTTTEEEEEEECTT
T ss_pred             EEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCC--------CEEEEecCCCCcEEEEEEccc
Confidence            98888999999999987665531  1334444  69999998        89999998 999999998654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.7e-27  Score=200.08  Aligned_cols=215  Identities=14%  Similarity=0.067  Sum_probs=149.5

Q ss_pred             cceeEEEEccC----CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578           92 DSVTGLCFSSD----GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM  167 (440)
Q Consensus        92 ~~V~~l~~s~d----g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~  167 (440)
                      ..|+.|+|+||    ++++++++.+  +++|++.++.    .......+|...|..++|+|+|+.+...........+  
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~----lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~--  183 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRR----LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETI--  183 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEEE--EEEEEETTTE----EEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCE--
T ss_pred             cceEEEEECCCccccccEEEeCCCe--EEEEecCCCc----EEEecccCCCCcEEEEEECCCCceeeeeccCCCceee--
Confidence            36777888888    8899998855  8899996542    1222246688999999999999877653322111100  


Q ss_pred             eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC---CCCeEEEEeeCCceEEEEeCCCCceeee
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA---DGSTIIASCSEGTDISIWHGKTGKLLGN  244 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~s~~~d~~i~vwd~~~~~~~~~  244 (440)
                                                                  ..+++   ++. +|++++.|++|++||+++++++++
T Consensus       184 --------------------------------------------l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~t  218 (356)
T 2w18_A          184 --------------------------------------------LTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKK  218 (356)
T ss_dssp             --------------------------------------------EEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             --------------------------------------------EEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEE
Confidence                                                        01122   334 999999999999999999999999


Q ss_pred             eeCCC---CcccEEEecCCCCeE------------EEEecCCCEEEEEeEecCCCceeeeeeeeee-----eccccceEE
Q 013578          245 VDTNQ---LKNNMAAISPNGRFL------------AAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-----KGHKSAVTW  304 (440)
Q Consensus       245 ~~~~~---~~v~~~~~s~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~h~~~v~~  304 (440)
                      +..|.   ..+.+++|+|+|+++            ++|+.|++|++||..+++        .+..+     .+|...+.+
T Consensus       219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk--------~l~v~~~~~p~Gh~~~~ls  290 (356)
T 2w18_A          219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL--------SVGVMLYCLPPGQAGRFLE  290 (356)
T ss_dssp             EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE--------EEEEEEECCCTTCCCCEEE
T ss_pred             EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE--------EEEEEEeeccCCCcceeEc
Confidence            97643   356677999999887            567889999999986543        22222     367666555


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeee-eeEEeCCCCCEEEEec-CCEEEEEE
Q 013578          305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY-DRLSLSSDGKILAATH-GSTLQWLS  382 (440)
Q Consensus       305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~-~~~i~i~d  382 (440)
                      ..+  ++.++++++.|++|+|||+++++++..              ..+|...+ ..++|+|||++|++|+ |++|++||
T Consensus       291 g~~--sg~~lASgS~DgTIkIWDl~tGk~l~t--------------L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          291 GDV--KDHCAAAILTSGTIAIWDLLLGQCTAL--------------LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             EEE--ETTEEEEEETTSCEEEEETTTCSEEEE--------------ECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             ccc--CCCEEEEEcCCCcEEEEECCCCcEEEE--------------ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence            554  478899999999999999998765421              12333333 4589999999999987 99999998


Q ss_pred             c
Q 013578          383 V  383 (440)
Q Consensus       383 ~  383 (440)
                      .
T Consensus       355 ~  355 (356)
T 2w18_A          355 Y  355 (356)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=2.1e-27  Score=212.16  Aligned_cols=200  Identities=17%  Similarity=0.222  Sum_probs=149.2

Q ss_pred             EEEEeeCCceEEEEeCCC-Ccee-eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          221 IIASCSEGTDISIWHGKT-GKLL-GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      +|++++.|+.|++||+.+ +..+ ..+..|...|.+++|+|++++|++++.||.|++||+....         ...+.+|
T Consensus        56 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---------~~~~~~~  126 (368)
T 3mmy_A           56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ---------AIQIAQH  126 (368)
T ss_dssp             EEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------EEEEEEC
T ss_pred             EEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC---------ceeeccc
Confidence            788899999999999997 5554 7788899999999999999999999999999999986543         3335679


Q ss_pred             ccceEEEEE--cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccc---------------------cc------ccc
Q 013578          299 KSAVTWLCF--APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL---------------------PI------PLL  349 (440)
Q Consensus       299 ~~~v~~~~~--~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------------~~------~~~  349 (440)
                      ...|.+++|  +|++.+|++++.||.|++||++++..+..........                     ..      ...
T Consensus       127 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  206 (368)
T 3mmy_A          127 DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRR  206 (368)
T ss_dssp             SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEE
T ss_pred             cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhh
Confidence            999999999  8999999999999999999998765432211100000                     00      000


Q ss_pred             CCCCCeeeeeeEEeCCCCCE----EEE-ecCCEEEEEEcCCcc---chhhhhccccC------------CeEEEEecCCC
Q 013578          350 DSNGATLQYDRLSLSSDGKI----LAA-THGSTLQWLSVETGK---VLDTAEKAHEG------------EITCMAWAPKT  409 (440)
Q Consensus       350 ~~~~~~~~v~~~~~s~~g~~----l~~-~~~~~i~i~d~~~~~---~~~~~~~~h~~------------~v~~v~~~~~~  409 (440)
                      ..........++++.++...    +++ +.++.|++|++....   .+..+ .+|..            .|++++|+|++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~  285 (368)
T 3mmy_A          207 IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF-KCHRSNGTNTSAPQDIYAVNGIAFHPVH  285 (368)
T ss_dssp             CCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE-ECSEEC----CCCEEECCEEEEEECTTT
T ss_pred             ccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee-eeeecccccccccccccceEEEEEecCC
Confidence            00111122344555444432    555 459999999999873   34444 45655            79999999998


Q ss_pred             CCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          410 IPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       410 ~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                              .+|++|+.||.|++||+.+++
T Consensus       286 --------~~l~s~~~dg~i~iwd~~~~~  306 (368)
T 3mmy_A          286 --------GTLATVGSDGRFSFWDKDART  306 (368)
T ss_dssp             --------CCEEEEETTSCEEEEETTTTE
T ss_pred             --------CEEEEEccCCeEEEEECCCCc
Confidence                    899999999999999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.9e-25  Score=207.89  Aligned_cols=322  Identities=11%  Similarity=0.035  Sum_probs=209.3

Q ss_pred             CCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEec--CCCCCcceeeEEecCCCCCCCceEE
Q 013578           72 DKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL--DDASSKSFKFLRINLPPGGPPTAVA  145 (440)
Q Consensus        72 ~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~--~~~~~~~~~~~~~~~~~~~~v~~v~  145 (440)
                      ..+..+..++.    .+.++..+.. +.+++|+|||++|++++.|++|++||+  .+..     .... ..++..+..++
T Consensus       156 ~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----~~~~-i~~g~~p~~va  228 (543)
T 1nir_A          156 RDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----KVAE-IKIGIEARSVE  228 (543)
T ss_dssp             GGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----EEEE-EECCSEEEEEE
T ss_pred             cCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----EEEE-EecCCCcceEE
Confidence            34455555543    3455663323 899999999999999999999999999  4432     1222 12456689999


Q ss_pred             Ecc----CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578          146 FAD----NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI  221 (440)
Q Consensus       146 ~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (440)
                      |+|    ++++++++...  ...+.+|+.............      ....+....+..      .....+.+++++..+
T Consensus       229 ~sp~~~~dg~~l~v~~~~--~~~v~v~D~~t~~~~~~i~~~------g~~~~~~~~~~~------~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          229 SSKFKGYEDRYTIAGAYW--PPQFAIMDGETLEPKQIVSTR------GMTVDTQTYHPE------PRVAAIIASHEHPEF  294 (543)
T ss_dssp             ECCSTTCTTTEEEEEEEE--SSEEEEEETTTCCEEEEEECC------EECSSSCCEESC------CCEEEEEECSSSSEE
T ss_pred             eCCCcCCCCCEEEEEEcc--CCeEEEEeccccccceeeccc------CcccCccccccC------CceEEEEECCCCCEE
Confidence            999    99999998764  245566654432111000000      000000000000      011234457888878


Q ss_pred             EEEeeCCceEEEEeCCCCceee--eeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeec-
Q 013578          222 IASCSEGTDISIWHGKTGKLLG--NVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKG-  297 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-  297 (440)
                      +++...++.|.+||..+.+.+.  .+. +...+..+.|+|+|++|++++ .+++|.+||+.+++        .+..+.. 
T Consensus       295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~--------l~~~i~~g  365 (543)
T 1nir_A          295 IVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR--------LSALVDVG  365 (543)
T ss_dssp             EEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE--------EEEEEECS
T ss_pred             EEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe--------EEEeeccC
Confidence            8999999999999998876543  443 345578899999999877665 58899999986554        3333432 


Q ss_pred             ---cccceEEEEEcCC-CCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          298 ---HKSAVTWLCFAPN-SEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       298 ---h~~~v~~~~~~p~-~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                         |.+....+ ++|+ +..++++. .|++|.+||+.+.............+       ..+...+..++++|+|++|++
T Consensus       366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l-------~~~g~~~~~v~~~pdg~~l~v  437 (543)
T 1nir_A          366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-------QGQGGGSLFIKTHPKSSHLYV  437 (543)
T ss_dssp             SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-------ECSCSCCCCEECCTTCCEEEE
T ss_pred             CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE-------EcCCCCceEEEcCCCCCcEEE
Confidence               55444444 5777 56667765 58999999998632111101111111       122233567999999999999


Q ss_pred             ec--------CCEEEEEEcCCccch-hhhh-------ccccCCeEEEEecCCCCCCCCCcceEEEEe-----eCCCeEEE
Q 013578          373 TH--------GSTLQWLSVETGKVL-DTAE-------KAHEGEITCMAWAPKTIPMGNQQVSVLATS-----SVDKKVKL  431 (440)
Q Consensus       373 ~~--------~~~i~i~d~~~~~~~-~~~~-------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~-----~~Dg~i~v  431 (440)
                      +.        ++.|.+||+.+++.. ..+.       ..+...+..++|+|+|        +.|+.+     +.|+.|.|
T Consensus       438 ~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g--------~~~~~s~~~~~~~~~~i~v  509 (543)
T 1nir_A          438 DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG--------DEVWFSVWNGKNDSSALVV  509 (543)
T ss_dssp             CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS--------SEEEEEEECCTTSCCEEEE
T ss_pred             ecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC--------CEEEEEeecCCCCCCeEEE
Confidence            75        579999999999876 3321       2456789999999998        566644     24899999


Q ss_pred             EeCCCCCC
Q 013578          432 WLAPSLES  439 (440)
Q Consensus       432 w~~~~~~~  439 (440)
                      ||..++++
T Consensus       510 ~D~~t~~~  517 (543)
T 1nir_A          510 VDDKTLKL  517 (543)
T ss_dssp             EETTTTEE
T ss_pred             EECCCceE
Confidence            99998764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.4e-25  Score=202.75  Aligned_cols=284  Identities=18%  Similarity=0.100  Sum_probs=198.1

Q ss_pred             cCcceeEEEEccCCC-EEEEee----CCC----cEEEEec--CCCCCcceeeEEecCCCCCCCceEEEcc----------
Q 013578           90 HGDSVTGLCFSSDGK-CLATAC----ADG----VIRVHKL--DDASSKSFKFLRINLPPGGPPTAVAFAD----------  148 (440)
Q Consensus        90 H~~~V~~l~~s~dg~-~l~t~s----~dg----~v~vW~~--~~~~~~~~~~~~~~~~~~~~v~~v~~~~----------  148 (440)
                      +...|...+|++.|. ++++|+    .||    +++|||+  .+++..   .......|...+..+++.+          
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~g  137 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL---AQNSYKVNKQWLRYAGHTASDEVFEKLTG  137 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE---EEEEEEECGGGHHHHHHHHHHHHHHHHHS
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE---eeeEEEcChhHHHHHHHHHHHHHHHHHcC
Confidence            445788889988875 666876    567    8999999  766421   1122334555666666664          


Q ss_pred             ----CCCeEEEEeecCCc---ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578          149 ----NATSIVVATHNLSG---CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI  221 (440)
Q Consensus       149 ----~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (440)
                          .+..++.++.+...   ..+++|+......                        ..............++|+|+ .
T Consensus       138 ~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~------------------------~~l~~~~~~v~~~~~Spdg~-~  192 (415)
T 2hqs_A          138 IKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ------------------------FVVHRSPQPLMSPAWSPDGS-K  192 (415)
T ss_dssp             SCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC------------------------EEEEEESSCEEEEEECTTSS-E
T ss_pred             CCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC------------------------EEEeCCCCcceeeEEcCCCC-E
Confidence                26677777665333   5777777543210                        00001111223345689999 7


Q ss_pred             EEEeeCCc---eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEE-EEecCCC--EEEEEeEecCCCceeeeeeeeee
Q 013578          222 IASCSEGT---DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLA-AAAFTAD--VKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       222 l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      +++++.++   .|++||+.+++.. .+..+...+.+++|+|+|+.|+ +++.++.  |++||+..+.         ...+
T Consensus       193 la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---------~~~l  262 (415)
T 2hqs_A          193 LAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---------IRQV  262 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---------EEEC
T ss_pred             EEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---------EEeC
Confidence            77777664   8999999988775 4556677899999999999888 6666665  8888875543         3456


Q ss_pred             eccccceEEEEEcCCCCEEEEEeC-CC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          296 KGHKSAVTWLCFAPNSEQIITASK-DG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       296 ~~h~~~v~~~~~~p~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                      ..|...+.+++|+|+|++|++++. ++  .|.+||+.++...        .       ...+...+..++|+|+|++|+.
T Consensus       263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~--------~-------l~~~~~~~~~~~~spdG~~l~~  327 (415)
T 2hqs_A          263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ--------R-------ITWEGSQNQDADVSSDGKFMVM  327 (415)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE--------E-------CCCSSSEEEEEEECTTSSEEEE
T ss_pred             cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE--------E-------EecCCCcccCeEECCCCCEEEE
Confidence            678889999999999999988876 45  5777788754311        0       0112235778999999999987


Q ss_pred             ec-C---CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC---eEEEEeCCCC
Q 013578          373 TH-G---STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK---KVKLWLAPSL  437 (440)
Q Consensus       373 ~~-~---~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg---~i~vw~~~~~  437 (440)
                      +. +   ..|++||+.+++... + ..|. .+.+++|+|++        ++|++++.|+   .|++|++...
T Consensus       328 ~~~~~g~~~i~~~d~~~~~~~~-l-~~~~-~~~~~~~spdg--------~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          328 VSSNGGQQHIAKQDLATGGVQV-L-SSTF-LDETPSLAPNG--------TMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             EEECSSCEEEEEEETTTCCEEE-C-CCSS-SCEEEEECTTS--------SEEEEEEEETTEEEEEEEETTSC
T ss_pred             EECcCCceEEEEEECCCCCEEE-e-cCCC-CcCCeEEcCCC--------CEEEEEEcCCCccEEEEEECCCC
Confidence            64 2   589999999988743 3 2344 89999999998        8888888877   7999998754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=1.4e-25  Score=205.08  Aligned_cols=291  Identities=12%  Similarity=0.108  Sum_probs=196.8

Q ss_pred             cCcceeEEE---EccCCCEEEEe--------------eCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCe
Q 013578           90 HGDSVTGLC---FSSDGKCLATA--------------CADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATS  152 (440)
Q Consensus        90 H~~~V~~l~---~s~dg~~l~t~--------------s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  152 (440)
                      +...+..++   |+|+++.++..              +.|+.++||.++..... ....... .....+.+++|+|++ .
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~-~~~~~~~~~~~s~~~-~  135 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRF-KTGFQPKSVRFIDNT-R  135 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEE-ECSSCBCCCEESSSS-E
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEE-cCCCCceEEEEeCCC-e
Confidence            345677777   88877665533              33444466666542211 1122222 223556799999944 4


Q ss_pred             EEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEE
Q 013578          153 IVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDIS  232 (440)
Q Consensus       153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  232 (440)
                      +++++..  ...+.+|+............           .....+...+.       .+.+++++. ++++++.|+.|+
T Consensus       136 ~~~~~~~--~~~i~~~d~~~g~~~~~~~~-----------~~~~~~~~~v~-------~~~~~~~~~-~~~s~~~d~~v~  194 (433)
T 3bws_A          136 LAIPLLE--DEGMDVLDINSGQTVRLSPP-----------EKYKKKLGFVE-------TISIPEHNE-LWVSQMQANAVH  194 (433)
T ss_dssp             EEEEBTT--SSSEEEEETTTCCEEEECCC-----------HHHHTTCCEEE-------EEEEGGGTE-EEEEEGGGTEEE
T ss_pred             EEEEeCC--CCeEEEEECCCCeEeeecCc-----------ccccccCCcee-------EEEEcCCCE-EEEEECCCCEEE
Confidence            4444433  24577776554321100000           00011111111       122345555 899999999999


Q ss_pred             EEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC
Q 013578          233 IWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS  311 (440)
Q Consensus       233 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  311 (440)
                      +||+.+++.+..+..+...+.+++|+|+++.+++++ .|+.|++||++.++        .+..+.. ...+.+++|+|++
T Consensus       195 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--------~~~~~~~-~~~~~~~~~~~~g  265 (433)
T 3bws_A          195 VFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--------EIRKTDK-IGLPRGLLLSKDG  265 (433)
T ss_dssp             EEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE--------EEEECCC-CSEEEEEEECTTS
T ss_pred             EEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc--------EEEEecC-CCCceEEEEcCCC
Confidence            999999999999988888999999999999886555 79999999986543        3444443 3458999999999


Q ss_pred             CEEEEEe--------CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE-Ee-cCCEEEEE
Q 013578          312 EQIITAS--------KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-AT-HGSTLQWL  381 (440)
Q Consensus       312 ~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~-~~~~i~i~  381 (440)
                      ++|++++        .|+.|++||++++.....       .        .+...+..++|+|+++.++ ++ .++.|++|
T Consensus       266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-------~--------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~  330 (433)
T 3bws_A          266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-------I--------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVY  330 (433)
T ss_dssp             SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-------E--------EEEECEEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred             CEEEEEECCCCccccCCCeEEEEECCCCcEEee-------c--------cCCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            9999888        488999999986543211       0        1233567899999998554 43 48999999


Q ss_pred             EcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC---------------CCeEEEEeCCCCC
Q 013578          382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV---------------DKKVKLWLAPSLE  438 (440)
Q Consensus       382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~---------------Dg~i~vw~~~~~~  438 (440)
                      |+.+++.+..+.  +...+.+++|+|++        ++|++++.               ||.|++||+.+++
T Consensus       331 d~~~~~~~~~~~--~~~~~~~~~~s~dg--------~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          331 DLKEKKVQKSIP--VFDKPNTIALSPDG--------KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             ETTTTEEEEEEE--CSSSEEEEEECTTS--------SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             ECCCCcEEEEec--CCCCCCeEEEcCCC--------CEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence            999998887763  77889999999998        77777776               5799999998764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2.4e-25  Score=201.16  Aligned_cols=276  Identities=13%  Similarity=0.103  Sum_probs=195.0

Q ss_pred             CcccCcc--c----c--ccccccCcceeEEEEcc--------------CCCEEEEeeCC------CcEEEEecCCCCCcc
Q 013578           76 NKRHHPL--D----V--NTLKGHGDSVTGLCFSS--------------DGKCLATACAD------GVIRVHKLDDASSKS  127 (440)
Q Consensus        76 ~~~~~~~--~----~--~~l~~H~~~V~~l~~s~--------------dg~~l~t~s~d------g~v~vW~~~~~~~~~  127 (440)
                      ..++|+.  .    +  ..+.+|...+..+++++              .+..++.++.+      +.|++||++....  
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--  171 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ--  171 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC--
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC--
Confidence            5566655  2    2  45788999999888875              15677776654      7999999975432  


Q ss_pred             eeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEee
Q 013578          128 FKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLF  207 (440)
Q Consensus       128 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (440)
                          .....|...+.+++|+|+++.+++++.+.....+++|+........              .   ..+.       .
T Consensus       172 ----~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~--------------l---~~~~-------~  223 (415)
T 2hqs_A          172 ----FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------V---ASFP-------R  223 (415)
T ss_dssp             ----EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------E---ECCS-------S
T ss_pred             ----EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE--------------e---ecCC-------C
Confidence                2223456789999999999999999987656688888765431100              0   0000       0


Q ss_pred             cccccccCCCCCeEEEEeeCCce--EEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-CC--CEEEEEeEecC
Q 013578          208 GASATYGTADGSTIIASCSEGTD--ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TA--DVKVWEIVYSK  282 (440)
Q Consensus       208 ~~~~~~~~~~~~~~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~  282 (440)
                      ......++|+|+.++++++.++.  |++||+.+++. ..+..+...+.+++|+|+|++|++++. ++  .|++||+..+.
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            12234568999966657776654  99999998876 556667778899999999999998886 45  45555654332


Q ss_pred             CCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC---CcEEEEecCccccccCCCCccccccccccCCCCCeeeee
Q 013578          283 DGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD---GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD  359 (440)
Q Consensus       283 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  359 (440)
                               ...+..+...+.+++|+|+|++|++++.+   ..|++||+.++....        +       ..+. .+.
T Consensus       303 ---------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~--------l-------~~~~-~~~  357 (415)
T 2hqs_A          303 ---------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV--------L-------SSTF-LDE  357 (415)
T ss_dssp             ---------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE--------C-------CCSS-SCE
T ss_pred             ---------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE--------e-------cCCC-CcC
Confidence                     23344566788999999999999988764   589999998653310        0       1111 477


Q ss_pred             eEEeCCCCCEEEEec-CC---EEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          360 RLSLSSDGKILAATH-GS---TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       360 ~~~~s~~g~~l~~~~-~~---~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      .++|+|+|++|+.++ ++   .|++||+.. +....+ ..|.+.|.+++|+|..
T Consensus       358 ~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l-~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          358 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARL-PATDGQVKFPAWSPYL  409 (415)
T ss_dssp             EEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEEC-CCSSSEEEEEEECCCC
T ss_pred             CeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEe-eCCCCCCcCCcccccc
Confidence            899999999888754 43   799999874 445555 4799999999999974

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=9.1e-23  Score=179.34  Aligned_cols=284  Identities=12%  Similarity=0.072  Sum_probs=182.2

Q ss_pred             EEEccCCC-EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccc
Q 013578           97 LCFSSDGK-CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS  175 (440)
Q Consensus        97 l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  175 (440)
                      ..|.++++ .+++++.++.|++||+.+++..     .....+...+ .++|+|+++++++++...  ..+++|+......
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~-~~~~s~dg~~l~~~~~~~--~~i~~~d~~~~~~   74 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL-----NQITLGYDFV-DTAITSDCSNVVVTSDFC--QTLVQIETQLEPP   74 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEE-----EEEECCCCEE-EEEECSSSCEEEEEESTT--CEEEEEECSSSSC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccccee-----eeEEccCCcc-eEEEcCCCCEEEEEeCCC--CeEEEEECCCCce
Confidence            34556555 4778889999999999876532     1111233445 999999999888877642  3666666543310


Q ss_pred             cccccccCCCCCCceeecccccccceeEEEeecccc-cccCCCCCeEEEEeeCC-c--eEEEEeCCCCceeeeeeCCCCc
Q 013578          176 TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASA-TYGTADGSTIIASCSEG-T--DISIWHGKTGKLLGNVDTNQLK  251 (440)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~~~d-~--~i~vwd~~~~~~~~~~~~~~~~  251 (440)
                      .                       .........+.. +.++|+|+ +++++..+ +  .|.+||+.+++.+..+..+. .
T Consensus        75 ~-----------------------~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~  129 (331)
T 3u4y_A           75 K-----------------------VVAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-D  129 (331)
T ss_dssp             E-----------------------EEEEEECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTEEEEEEECCT-T
T ss_pred             e-----------------------EEecccCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCCeEEEEECCC-C
Confidence            0                       111222223334 56689998 55555555 3  89999999998888776544 4


Q ss_pred             ccEEEecCCCCeEEEE-ecCCC-EEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE-eCCCcEEEEec
Q 013578          252 NNMAAISPNGRFLAAA-AFTAD-VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA-SKDGTLRVWNI  328 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~-~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-~~dg~i~iwd~  328 (440)
                      ...++|+|+|++|+++ ..++. |.+|++....  ...... ...+ .....+.+++|+|+|++++.+ ..++.|++||+
T Consensus       130 ~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g--~~~~~~-~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~  205 (331)
T 3u4y_A          130 AVGIAISPNGNGLILIDRSSANTVRRFKIDADG--VLFDTG-QEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILET  205 (331)
T ss_dssp             EEEEEECTTSSCEEEEEETTTTEEEEEEECTTC--CEEEEE-EEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             ccceEECCCCCEEEEEecCCCceEEEEEECCCC--cEeecC-Cccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence            5899999999866655 45588 9999986322  111111 1222 334567999999999966554 46889999999


Q ss_pred             CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccc--hhhhh------ccccC
Q 013578          329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKV--LDTAE------KAHEG  398 (440)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~--~~~~~------~~h~~  398 (440)
                      +++....    ....+.        ....+..++|+|||++++++.  ++.|.+||..+++.  +..+.      .....
T Consensus       206 ~~~~~~~----~~~~~~--------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
T 3u4y_A          206 QNPENIT----LLNAVG--------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF  273 (331)
T ss_dssp             SSTTSCE----EEEEEE--------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGT
T ss_pred             CCCcccc----eeeecc--------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcc
Confidence            8654300    011111        012356799999999776653  67899999999877  22221      01112


Q ss_pred             CeEEEEecCCCCCCCCCcceEEE-EeeCCCeEEEEeCCCC
Q 013578          399 EITCMAWAPKTIPMGNQQVSVLA-TSSVDKKVKLWLAPSL  437 (440)
Q Consensus       399 ~v~~v~~~~~~~~~~~~~~~~l~-t~~~Dg~i~vw~~~~~  437 (440)
                      ....++|+|++        ++|+ ++..++.|.+|++...
T Consensus       274 ~~~~~~~spdg--------~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          274 GANQMALNKTE--------TKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             TCCCEEECTTS--------SEEEEEETTTTEEEEEETTSC
T ss_pred             cccceEECCCC--------CEEEEecCCCCcEEEEEecCC
Confidence            23568999998        6665 4555679999999764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=1.1e-23  Score=195.89  Aligned_cols=282  Identities=13%  Similarity=0.088  Sum_probs=196.7

Q ss_pred             EEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc--ccccc
Q 013578           98 CFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE--EKAIS  175 (440)
Q Consensus        98 ~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~  175 (440)
                      +|+|++.++++++.|++|.+||..+++..  .  ....++  .+..++|+|+++++++++.+   ..+.+|+.  .... 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~--~--~i~~g~--~~~~v~~spdg~~l~v~~~d---~~V~v~D~~~~t~~-  213 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV--K--VIDTGY--AVHISRMSASGRYLLVIGRD---ARIDMIDLWAKEPT-  213 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEE--E--EEECST--TEEEEEECTTSCEEEEEETT---SEEEEEETTSSSCE-
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEE--E--EEecCc--ccceEEECCCCCEEEEECCC---CeEEEEECcCCCCc-
Confidence            38899999999999999999999876531  1  111122  37899999999999999876   56667765  2211 


Q ss_pred             cccccccCCCCCCceeecccccccceeEEEeecccccccCC----CCCeEEEEeeCCceEEEEeCCCCceeeeeeCC---
Q 013578          176 TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA----DGSTIIASCSEGTDISIWHGKTGKLLGNVDTN---  248 (440)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---  248 (440)
                                             ....+.....+..+.++|    +|+.+++++..+++|.+||..+++++..+..+   
T Consensus       214 -----------------------~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~  270 (543)
T 1nir_A          214 -----------------------KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT  270 (543)
T ss_dssp             -----------------------EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC
T ss_pred             -----------------------EEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc
Confidence                                   001111122334455688    99944444446899999999999998887652   


Q ss_pred             --------CCcccEEEecCCCCe-EEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-
Q 013578          249 --------QLKNNMAAISPNGRF-LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-  318 (440)
Q Consensus       249 --------~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-  318 (440)
                              ...+..+.++|++.. +++...+++|.+||+...+..      .+..+ .+...+.++.|+|+|++|++++ 
T Consensus       271 ~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l------~~~~i-~~~~~~~~~~~spdg~~l~va~~  343 (543)
T 1nir_A          271 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL------TVTSI-GAAPFLHDGGWDSSHRYFMTAAN  343 (543)
T ss_dssp             SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC------EEEEE-ECCSSCCCEEECTTSCEEEEEEG
T ss_pred             cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc------eeEEe-ccCcCccCceECCCCCEEEEEec
Confidence                    225778999997665 455667899999998654310      11122 2556788999999999876554 


Q ss_pred             CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-CCEEEEec--CCEEEEEEcCC-------ccc
Q 013578          319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-GKILAATH--GSTLQWLSVET-------GKV  388 (440)
Q Consensus       319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~--~~~i~i~d~~~-------~~~  388 (440)
                      .+++|.+||+.++++...       +....   ..|......+ ++|+ |++++++.  ++.|.+||+.+       +++
T Consensus       344 ~~~~v~v~D~~tg~l~~~-------i~~g~---~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~  412 (543)
T 1nir_A          344 NSNKVAVIDSKDRRLSAL-------VDVGK---TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK  412 (543)
T ss_dssp             GGTEEEEEETTTTEEEEE-------EECSS---SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred             CCCeEEEEECCCCeEEEe-------eccCC---CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE
Confidence            588999999998755321       11000   0111111122 4676 66777764  79999999998       788


Q ss_pred             hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee-------CCCeEEEEeCCCCCC
Q 013578          389 LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS-------VDKKVKLWLAPSLES  439 (440)
Q Consensus       389 ~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-------~Dg~i~vw~~~~~~~  439 (440)
                      +..+ .+|.+.+..++|+|++        ++|++++       .+++|.|||+.+++.
T Consensus       413 v~~l-~~~g~~~~~v~~~pdg--------~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          413 VAEL-QGQGGGSLFIKTHPKS--------SHLYVDTTFNPDARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             EEEE-ECSCSCCCCEECCTTC--------CEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             EEEE-EcCCCCceEEEcCCCC--------CcEEEecCCCCCcccCceEEEEECCCCCC
Confidence            8888 4888889999999998        8899887       378999999998763

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.92  E-value=3.7e-24  Score=202.87  Aligned_cols=278  Identities=10%  Similarity=0.086  Sum_probs=187.4

Q ss_pred             ccccccc-CcceeEEEEccCCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           84 VNTLKGH-GDSVTGLCFSSDGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        84 ~~~l~~H-~~~V~~l~~s~dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ++.++.+ ..+|++++|+|||++||+++. ||+++||+++++.     ..+....+...+..++|+|| +.++++..+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~-----~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g   86 (582)
T 3o4h_A           13 VRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE-----TVKLNREPINSVLDPHYGVG-RVILVRDVSKG   86 (582)
T ss_dssp             HHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE-----EEECCSSCCSEECEECTTCS-EEEEEEECSTT
T ss_pred             HHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCC-----cEeeecccccccccccCCCC-eEEEEeccCCC
Confidence            3444433 668999999999999999887 9999999986543     22333333357899999999 55555543222


Q ss_pred             c--ceEEeecc--ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC
Q 013578          162 G--CSLYMYGE--EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK  237 (440)
Q Consensus       162 ~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~  237 (440)
                      .  ..++.++.  .....               .+..  ....         ....++++++..+++...++.+.+||+.
T Consensus        87 ~~~~~l~~~~~~~~g~~~---------------~l~~--~~~~---------~~~~~s~dg~~~~~~s~~~~~~~l~d~~  140 (582)
T 3o4h_A           87 AEQHALFKVNTSRPGEEQ---------------RLEA--VKPM---------RILSGVDTGEAVVFTGATEDRVALYALD  140 (582)
T ss_dssp             SCCEEEEEEETTSTTCCE---------------ECTT--SCSB---------EEEEEEECSSCEEEEEECSSCEEEEEEE
T ss_pred             CcceEEEEEeccCCCccc---------------cccC--CCCc---------eeeeeCCCCCeEEEEecCCCCceEEEcc
Confidence            2  23444433  21100               0000  0000         0113367776555554444456699999


Q ss_pred             CCceeeeeeCCCCcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE
Q 013578          238 TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ  313 (440)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  313 (440)
                      +++.......+.   ..++|+|||++|++++.+    +.|++||+..+.         ...+..|.+.+..++|+|||++
T Consensus       141 ~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~---------~~~l~~~~~~~~~~~~SpDG~~  208 (582)
T 3o4h_A          141 GGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG---------LRVFDSGEGSFSSASISPGMKV  208 (582)
T ss_dssp             TTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC---------CEEECCSSCEEEEEEECTTSCE
T ss_pred             CCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC---------ceEeecCCCccccceECCCCCE
Confidence            887655544332   789999999999988877    678999876543         3456778888999999999999


Q ss_pred             EEEEeCCC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE--------eCCCCCEEEEec-CCEEEEEE
Q 013578          314 IITASKDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS--------LSSDGKILAATH-GSTLQWLS  382 (440)
Q Consensus       314 l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~g~~l~~~~-~~~i~i~d  382 (440)
                      |+++..++  .|++||+.++... .              ..++...+..++        |+|||.+++++. ++.+++|+
T Consensus       209 l~~~~~~~~~~i~~~d~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          209 TAGLETAREARLVTVDPRDGSVE-D--------------LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             EEEEECSSCEEEEEECTTTCCEE-E--------------CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             EEEccCCCeeEEEEEcCCCCcEE-E--------------ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence            99888888  8999999865432 1              112222344455        999998777665 89999999


Q ss_pred             cCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe---EEEEeCC
Q 013578          383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK---VKLWLAP  435 (440)
Q Consensus       383 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~---i~vw~~~  435 (440)
                      +  |+...    .+.+.|.+++|+ ++        .++++++.+.+   +.+|+..
T Consensus       274 ~--g~~~~----~~~~~v~~~~~s-dg--------~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          274 D--GERVE----APQGNHGRVVLW-RG--------KLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             T--TEEEC----CCSSEEEEEEEE-TT--------EEEEEEEETTEEEEEEEETTC
T ss_pred             E--CCeec----cCCCceEEEEec-CC--------EEEEEEcCCCCCCeEEEEcCC
Confidence            9  66554    244678999999 87        78888888744   6666654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=8.7e-24  Score=213.14  Aligned_cols=312  Identities=13%  Similarity=0.126  Sum_probs=207.9

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCC------CcEEEEecCCCCCcceeeEEecCCCCCCC-------ceEEEccC
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACAD------GVIRVHKLDDASSKSFKFLRINLPPGGPP-------TAVAFADN  149 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~d------g~v~vW~~~~~~~~~~~~~~~~~~~~~~v-------~~v~~~~~  149 (440)
                      ..+.+.+|.+.|.+++|||||++||+++.+      ..|.+|++.++.      ......|...+       ..++|+||
T Consensus        44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~------~~~lt~~~~~~~~~~~~~~~~~~SpD  117 (1045)
T 1k32_A           44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE------IKRITYFSGKSTGRRMFTDVAGFDPD  117 (1045)
T ss_dssp             CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE------EEECCCCCEEEETTEECSEEEEECTT
T ss_pred             cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC------eEEcccCCCcccccccccccccCCCC
Confidence            356788999999999999999999988654      378999987653      22334455555       89999999


Q ss_pred             CCeEEEEeecC---CcceEEeecccccccc--ccccc------------------cC-----------------------
Q 013578          150 ATSIVVATHNL---SGCSLYMYGEEKAIST--NEGKQ------------------QS-----------------------  183 (440)
Q Consensus       150 ~~~l~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~------------------~~-----------------------  183 (440)
                      |+.++++..+.   ....++.++.......  .....                  ..                       
T Consensus       118 g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~  197 (1045)
T 1k32_A          118 GNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK  197 (1045)
T ss_dssp             CCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE
T ss_pred             CEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeE
Confidence            99444444321   2245666654332111  00000                  00                       


Q ss_pred             -----------------------CCCCCceeecccc-cccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578          184 -----------------------KLPGPEIKWEHHK-VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG  239 (440)
Q Consensus       184 -----------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  239 (440)
                                             ........|.... ......+..........++|+|+ .++.+ .++.|++||+...
T Consensus       198 ~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~-~la~~-~~~~i~~~d~~~~  275 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGR-RILFS-KGGSIYIFNPDTE  275 (1045)
T ss_dssp             EEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSS-CEEEE-ETTEEEEECTTTC
T ss_pred             ECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCC-EEEEE-eCCEEEEecCCce
Confidence                                   0000001111100 00000000001122345678888 45554 4888999999544


Q ss_pred             ceeeeeeC-----------CCCcccEEEec-CCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc-ceEEEE
Q 013578          240 KLLGNVDT-----------NQLKNNMAAIS-PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS-AVTWLC  306 (440)
Q Consensus       240 ~~~~~~~~-----------~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~  306 (440)
                      + +..+..           +...+..++|+ |+|++|++++ ++.|.+|++..+.         ...+..|.. .+.+++
T Consensus       276 ~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~  344 (1045)
T 1k32_A          276 K-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY---------VLKVPEPLRIRYVRRG  344 (1045)
T ss_dssp             C-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB---------EEECSCCSCEEEEEEC
T ss_pred             E-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc---------eEEccCCCcceEEeee
Confidence            3 334443           23368999999 9999999988 8899999875432         233556777 899999


Q ss_pred             EcCCCCEEEEEeCCCcEE-EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578          307 FAPNSEQIITASKDGTLR-VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE  384 (440)
Q Consensus       307 ~~p~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~  384 (440)
                      |+ +|+.|+.++.++.+. +||+.++...        .    +   .++...+..++|+|||++|+++. ++.|++||+.
T Consensus       345 ~s-dg~~l~~~s~~~~l~~~~d~~~~~~~--------~----l---~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~  408 (1045)
T 1k32_A          345 GD-TKVAFIHGTREGDFLGIYDYRTGKAE--------K----F---EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  408 (1045)
T ss_dssp             SS-SEEEEEEEETTEEEEEEEETTTCCEE--------E----C---CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             Ec-CCCeEEEEECCCceEEEEECCCCCce--------E----e---cCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence            99 999999999888888 8898754221        0    0   13345578899999999998765 7899999999


Q ss_pred             CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC----------eEEEEeCCCCC
Q 013578          385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK----------KVKLWLAPSLE  438 (440)
Q Consensus       385 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg----------~i~vw~~~~~~  438 (440)
                      +++....+ .+|.+.+.+++|+||+        ++|++++.++          .|++||+.+++
T Consensus       409 tg~~~~~~-~~~~~~v~~~~~SpDG--------~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          409 TGKPTVIE-RSREAMITDFTISDNS--------RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             TCCEEEEE-ECSSSCCCCEEECTTS--------CEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             CCceEEec-cCCCCCccceEECCCC--------CeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            99877665 4788999999999998        8888887654          89999998754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=7.8e-23  Score=180.65  Aligned_cols=284  Identities=11%  Similarity=0.112  Sum_probs=178.7

Q ss_pred             EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc--ccccccccccc
Q 013578          105 CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE--KAISTNEGKQQ  182 (440)
Q Consensus       105 ~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  182 (440)
                      .+++++.|+.|++|+++.....  .... ...+...+..++|+|+++++++++.+.  ..+.+|+..  .....      
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~--~~v~~~~~~~~~~~~~------   75 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGAL--TLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPE--FRVLAYRIAPDDGALT------   75 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCE--EEEE-EEECSSCCCCEEECTTSSEEEEEETTT--TEEEEEEECTTTCCEE------
T ss_pred             EEEeCCCCCeEEEEEECCCCcE--EEee-eEecCCCCceEEECCCCCEEEEeecCC--CeEEEEEecCCCCcee------
Confidence            4445578999999999642211  1111 234557899999999999998888753  455555543  11000      


Q ss_pred             CCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC---CCceeeeeeCCCCcccEEEecC
Q 013578          183 SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK---TGKLLGNVDTNQLKNNMAAISP  259 (440)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~s~  259 (440)
                                      ....+.....+..+.++++++.+++++..++.|.+||+.   +.+.+..+..+ ..+.+++|+|
T Consensus        76 ----------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~  138 (343)
T 1ri6_A           76 ----------------FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP  138 (343)
T ss_dssp             ----------------EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred             ----------------eccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence                            000001111234455689998555666668999999994   33444554443 4578899999


Q ss_pred             CCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeee--eeec-cccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccc
Q 013578          260 NGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVM--QLKG-HKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHL  334 (440)
Q Consensus       260 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~-h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~  334 (440)
                      +++++++++ .++.|++||+....  ...   ...  .+.. ....+.+++|+|++++|+.++ .++.|.+||++.... 
T Consensus       139 dg~~l~~~~~~~~~v~~~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g-  212 (343)
T 1ri6_A          139 DNRTLWVPALKQDRICLFTVSDDG--HLV---AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG-  212 (343)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTS--CEE---EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS-
T ss_pred             CCCEEEEecCCCCEEEEEEecCCC--cee---eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC-
Confidence            999888887 89999999996421  111   111  2222 335788999999999776554 789999999963110 


Q ss_pred             cCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-e-cCCEEEEEEcC--Cc--cchhhhhccccCCeEEEEecCC
Q 013578          335 DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-T-HGSTLQWLSVE--TG--KVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~-~~~~i~i~d~~--~~--~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                        .......... ..........+..++|+|+|++|++ + .++.|.+||+.  ++  +.+..+. .+ ..+.+++|+|+
T Consensus       213 --~~~~~~~~~~-~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~-~~~~~~~~s~d  287 (343)
T 1ri6_A          213 --NIECVQTLDM-MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TE-TQPRGFNVDHS  287 (343)
T ss_dssp             --CCEEEEEEEC-SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CS-SSCCCEEECTT
T ss_pred             --cEEEEeeccc-cCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CC-CccceEEECCC
Confidence              0000000000 0001112234567999999997775 3 37999999998  33  3444442 23 34899999999


Q ss_pred             CCCCCCCcceEEEEee-CCCeEEEEeCC
Q 013578          409 TIPMGNQQVSVLATSS-VDKKVKLWLAP  435 (440)
Q Consensus       409 ~~~~~~~~~~~l~t~~-~Dg~i~vw~~~  435 (440)
                      +        ++|++++ .|+.|.+|+++
T Consensus       288 g--------~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          288 G--------KYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             S--------SEEEEECTTTCEEEEEEEE
T ss_pred             C--------CEEEEecCCCCeEEEEEEc
Confidence            8        7777766 68999999554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=2.3e-23  Score=179.96  Aligned_cols=255  Identities=12%  Similarity=0.138  Sum_probs=178.3

Q ss_pred             CCCCCcccCcc---ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCC-CCCcceeeEEecCCC-CCCCceEEE
Q 013578           72 DKDQNKRHHPL---DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDD-ASSKSFKFLRINLPP-GGPPTAVAF  146 (440)
Q Consensus        72 ~~~~~~~~~~~---~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~-~~~~~~~~~~~~~~~-~~~v~~v~~  146 (440)
                      ..++.+..|..   ....+..|.+.|.+++|+|||++|++++ ++.|++||+.+ +...     .....+ ...+.+++|
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~   92 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-----KVDTGFATICNNDHGI   92 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----ECCCTTCCCBCSCCEE
T ss_pred             CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----EeccccccccccceEE
Confidence            34444554443   2445677999999999999999999987 78999999987 5432     222222 367888999


Q ss_pred             ccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee
Q 013578          147 ADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS  226 (440)
Q Consensus       147 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  226 (440)
                      +|++++++++..+.                                                        +         
T Consensus        93 spdg~~l~~~~~~~--------------------------------------------------------~---------  107 (297)
T 2ojh_A           93 SPDGALYAISDKVE--------------------------------------------------------F---------  107 (297)
T ss_dssp             CTTSSEEEEEECTT--------------------------------------------------------T---------
T ss_pred             CCCCCEEEEEEeCC--------------------------------------------------------C---------
Confidence            99988776654320                                                        0         


Q ss_pred             CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEE-EEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578          227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLA-AAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL  305 (440)
Q Consensus       227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~  305 (440)
                      ....|..|+..+++. ..+..+. .+..++|+|+++.|+ ++..++.+++|+++....       ....+..|...+.++
T Consensus       108 ~~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~  178 (297)
T 2ojh_A          108 GKSAIYLLPSTGGTP-RLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-------VETRLTHGEGRNDGP  178 (297)
T ss_dssp             SSCEEEEEETTCCCC-EECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-------CEEECCCSSSCEEEE
T ss_pred             CcceEEEEECCCCce-EEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCC-------cceEcccCCCccccc
Confidence            123355566555543 3333333 478889999999887 677899999999865431       234556677889999


Q ss_pred             EEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C--------
Q 013578          306 CFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G--------  375 (440)
Q Consensus       306 ~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~--------  375 (440)
                      +|+|++++|+.++ .|+.+++|++.....      ..       .....+...+..++|+|+|++|+.+. +        
T Consensus       179 ~~s~dg~~l~~~~~~~~~~~i~~~~~~~~------~~-------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  245 (297)
T 2ojh_A          179 DYSPDGRWIYFNSSRTGQMQIWRVRVDGS------SV-------ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR  245 (297)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTSS------CE-------EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred             eECCCCCEEEEEecCCCCccEEEECCCCC------Cc-------EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence            9999999887766 589999999862210      11       11122345678899999999888754 2        


Q ss_pred             ---CEEEEEEcCCccchhhh-hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC
Q 013578          376 ---STLQWLSVETGKVLDTA-EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK  427 (440)
Q Consensus       376 ---~~i~i~d~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg  427 (440)
                         +.|++||+.+++..... ..+|...+.+++|+|++        ++|++++.|.
T Consensus       246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg--------~~l~~~~~~~  293 (297)
T 2ojh_A          246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG--------DEFAYVRYFP  293 (297)
T ss_dssp             SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS--------SEEEEEEECC
T ss_pred             cCceEEEEEecCCCCceeeeccCCCCcccccceECCCC--------CEEEEEEecc
Confidence               56999999988753322 13678899999999998        7787777654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=2.7e-23  Score=202.94  Aligned_cols=289  Identities=10%  Similarity=0.094  Sum_probs=189.3

Q ss_pred             CcceeEEEEccCCCEEEEeeC-CC-----cEEEEecCCCCCcceeeEEecCCCC----------------------CCCc
Q 013578           91 GDSVTGLCFSSDGKCLATACA-DG-----VIRVHKLDDASSKSFKFLRINLPPG----------------------GPPT  142 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~-dg-----~v~vW~~~~~~~~~~~~~~~~~~~~----------------------~~v~  142 (440)
                      ...|.+++|||||++|++++. |+     .|++||+.+++..  .... ...+.                      ..+.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR--LLVD-SKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE--EEEC-GGGTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee--Eccc-hhhcccccccccchhhhhhhhhhhccccCcc
Confidence            457999999999999999998 88     8999999876532  1111 11111                      2378


Q ss_pred             eEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578          143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII  222 (440)
Q Consensus       143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  222 (440)
                      +++|+|||++|++++.    ..+++|+.......    ....+          ..+..       ......++|||+ .+
T Consensus       113 ~~~~SpDg~~l~~~~~----~~i~~~d~~~~~~~----~~~~l----------~~~~~-------~~~~~~~SPDG~-~l  166 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG----GELYLYDLKQEGKA----AVRQL----------THGEG-------FATDAKLSPKGG-FV  166 (741)
T ss_dssp             CCEECTTSSEEEEEET----TEEEEEESSSCSTT----SCCBC----------CCSSS-------CEEEEEECTTSS-EE
T ss_pred             eeEECCCCCEEEEEeC----CcEEEEECCCCCcc----eEEEc----------ccCCc-------ccccccCCCCCC-EE
Confidence            9999999999999875    57777776543000    00000          00001       112234589999 66


Q ss_pred             EEeeCCceEEEEeCCCCceeeeeeCCCCc----------------ccEEEecCCCCeEEEEecCC---------------
Q 013578          223 ASCSEGTDISIWHGKTGKLLGNVDTNQLK----------------NNMAAISPNGRFLAAAAFTA---------------  271 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------------v~~~~~s~~~~~l~~~~~dg---------------  271 (440)
                      +.++. +.|++||+.+++.......+...                +..++|+|||++|++++.|+               
T Consensus       167 a~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~  245 (741)
T 2ecf_A          167 SFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADR  245 (741)
T ss_dssp             EEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSC
T ss_pred             EEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCc
Confidence            66654 57999999988766544433321                47899999999999998765               


Q ss_pred             ------------------CEEEEEeEe-cCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC-----CCcEEEEe
Q 013578          272 ------------------DVKVWEIVY-SKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK-----DGTLRVWN  327 (440)
Q Consensus       272 ------------------~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-----dg~i~iwd  327 (440)
                                        .|++||+.. ++.   .   .+.....|...+.+++| |||++|+.++.     +..|++||
T Consensus       246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~---~---~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d  318 (741)
T 2ecf_A          246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQT---Q---WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVT  318 (741)
T ss_dssp             EEEEEEECCBTTSCCCEEEEEEECSSTTCCC---E---EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEE
T ss_pred             ccceEeecCCCCCCCCeeEEEEEECCCCCce---E---EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEE
Confidence                              677777754 331   0   11111247788999999 99999987764     56799999


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC-CccchhhhhccccCCeEEE-E
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE-TGKVLDTAEKAHEGEITCM-A  404 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~-~~~~~~~~~~~h~~~v~~v-~  404 (440)
                      +.++....       ...   .........+..++|+|||++++++. ++.+++|... +++ ...+ ..|...|..+ .
T Consensus       319 ~~~g~~~~-------~~~---~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~~~~v~~~~~  386 (741)
T 2ecf_A          319 LASNQQRV-------LAH---ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL-THGNWSVDELLA  386 (741)
T ss_dssp             TTTCCEEE-------EEE---EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES-CCSSSCEEEEEE
T ss_pred             CCCCceEE-------EEE---cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee-eecceEEEeEeE
Confidence            98764321       000   00000001245789999999877765 6666666554 344 5555 4677788887 5


Q ss_pred             ecCCCCCCCCCcceEE-EEeeCCC--eEEEEeCCC
Q 013578          405 WAPKTIPMGNQQVSVL-ATSSVDK--KVKLWLAPS  436 (440)
Q Consensus       405 ~~~~~~~~~~~~~~~l-~t~~~Dg--~i~vw~~~~  436 (440)
                      |+|++        +.| ++++.|+  .++||+++.
T Consensus       387 ~s~dg--------~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          387 VDEKA--------GLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             EETTT--------TEEEEEECSSCTTCBEEEEEET
T ss_pred             EeCCC--------CEEEEEEeCCCCceEEEEEEEc
Confidence            99998        555 4555565  899999853

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=2.5e-23  Score=202.61  Aligned_cols=289  Identities=12%  Similarity=0.042  Sum_probs=185.6

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC---CCceEEEccCCCeEEEEeecCCc------
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG---PPTAVAFADNATSIVVATHNLSG------  162 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~~~~~~l~~~~~~~~~------  162 (440)
                      ..+.+++|+|||+++++ +.||+|++||+.+++..     .....+..   .+.+++|+|||++|++++.+...      
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-----~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-----VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-----EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-----EEeccccccccccceEEECCCCCEEEEEecCccceeecce
Confidence            34788999999998776 78999999999887532     22233332   48999999999999999765332      


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ..+++|+........-              .....+       ........++|||+ .|+.++. +.|++||+.+++..
T Consensus        91 ~~i~~~d~~~~~~~~l--------------~~~~~~-------~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~~~  147 (723)
T 1xfd_A           91 GYYVLSKIPHGDPQSL--------------DPPEVS-------NAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQAI  147 (723)
T ss_dssp             SEEEEEESSSCCCEEC--------------CCTTCC-------SCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSCCE
T ss_pred             eeEEEEECCCCceEec--------------cCCccc-------cccccccEECCCCC-EEEEEEC-CeEEEEECCCCceE
Confidence            4667776554321000              000000       00123455699999 5666655 68999999988776


Q ss_pred             eeeeCCCCcc------------------cEEEecCCCCeEEEEecCC---------------------------------
Q 013578          243 GNVDTNQLKN------------------NMAAISPNGRFLAAAAFTA---------------------------------  271 (440)
Q Consensus       243 ~~~~~~~~~v------------------~~~~~s~~~~~l~~~~~dg---------------------------------  271 (440)
                      .....+...+                  .+++|+|||+.|++++.++                                 
T Consensus       148 ~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  227 (723)
T 1xfd_A          148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS  227 (723)
T ss_dssp             EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE
T ss_pred             EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCe
Confidence            6554433333                  7899999999999987653                                 


Q ss_pred             -CEEEEEeEecCCCceeeeeeeeeeec------cccceEEEEEcCCCCEEEEEeC----CCcEEEEecCccccccCCCCc
Q 013578          272 -DVKVWEIVYSKDGLVKAVTSVMQLKG------HKSAVTWLCFAPNSEQIITASK----DGTLRVWNINVRYHLDEDPKT  340 (440)
Q Consensus       272 -~i~i~d~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~p~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~  340 (440)
                       .|++||+..+.        ....+..      +...+.+++|+|||++|++.+.    +..|++||+.++....     
T Consensus       228 ~~l~~~d~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~-----  294 (723)
T 1xfd_A          228 ISLHVIGLNGPT--------HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK-----  294 (723)
T ss_dssp             EEEEEEESSSSC--------CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE-----
T ss_pred             eEEEEEECCCCc--------eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE-----
Confidence             67788875443        1223333      3667899999999998877653    3579999998664321     


Q ss_pred             cccccccccCCCCCee-eeeeEEeCCCCCEEEEe---cCC------EEEEEE-cCCccc--hhhhhccccCCeEE-EEec
Q 013578          341 LKVLPIPLLDSNGATL-QYDRLSLSSDGKILAAT---HGS------TLQWLS-VETGKV--LDTAEKAHEGEITC-MAWA  406 (440)
Q Consensus       341 ~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~---~~~------~i~i~d-~~~~~~--~~~~~~~h~~~v~~-v~~~  406 (440)
                        ...   ....+... ....++|+|||+.|+..   .++      .|++|| ..+++.  ...+. .+...+.. ++|+
T Consensus       295 --~~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~~~~~~s  368 (723)
T 1xfd_A          295 --KHE---DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYD  368 (723)
T ss_dssp             --EEE---EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEE
T ss_pred             --EEE---eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee-cCCeEEEeeeEEc
Confidence              000   00000000 01368999999977643   255      577777 344441  44443 33344554 6999


Q ss_pred             CCCCCCCCCcceEEEEeeCC---CeEEEEeCCC
Q 013578          407 PKTIPMGNQQVSVLATSSVD---KKVKLWLAPS  436 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~t~~~D---g~i~vw~~~~  436 (440)
                      |++        +.|+..+.+   +.+++|+++.
T Consensus       369 pdg--------~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          369 EKG--------NKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             TTT--------TEEEEEESSSCTTCCEEEEECS
T ss_pred             CCC--------CEEEEEEcCCCCcceEEEEEeC
Confidence            998        677655554   8899999864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=2.7e-22  Score=177.97  Aligned_cols=281  Identities=10%  Similarity=0.076  Sum_probs=191.3

Q ss_pred             cCcceeEEEEccCCCEEEEeeC-------CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           90 HGDSVTGLCFSSDGKCLATACA-------DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~-------dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ....+..++|+|+|++|++++.       ++.|.+||..+++..  ....    ....+..++|+|++++++++...  .
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~----~~~~~~~~~~s~dg~~l~v~~~~--~  110 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT--QAIH----NDLKPFGATINNTTQTLWFGNTV--N  110 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE--EEEE----ESSCCCSEEEETTTTEEEEEETT--T
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE--EEEe----cCCCcceEEECCCCCEEEEEecC--C
Confidence            3456889999999998888874       568999999876522  1111    23558899999999988777654  2


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe-eCCceEEEEeCCCCce
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC-SEGTDISIWHGKTGKL  241 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~  241 (440)
                      ..+.+|+.............             ...... ......+..+.++++++.+++++ +.++.|.+||..+++.
T Consensus       111 ~~v~~~d~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~  176 (353)
T 3vgz_A          111 SAVTAIDAKTGEVKGRLVLD-------------DRKRTE-EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL  176 (353)
T ss_dssp             TEEEEEETTTCCEEEEEESC-------------CCCCCS-SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE
T ss_pred             CEEEEEeCCCCeeEEEEecC-------------CCcccc-ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce
Confidence            46677765443211100000             000000 00000112344578888555555 3578899999999998


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee----ccccceEEEEEcCCCCEEEEE
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK----GHKSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~p~~~~l~s~  317 (440)
                      +..+..+...+..++|+|++++|++++.++.|.+||+..++        ....+.    ++...+.+++|+|++++++.+
T Consensus       177 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          177 KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK--------ILSRKKLLDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE--------EEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe--------EEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence            88887555668889999999999999999999999986543        222222    245668899999999987766


Q ss_pred             eC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEcCCccchhhhhc
Q 013578          318 SK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVETGKVLDTAEK  394 (440)
Q Consensus       318 ~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~~~~~~~~~~~~  394 (440)
                      +. ++.|.+||+.++.....       +..      +.   ...++|+|+|++++++  .++.|.+||..+++.+..+. 
T Consensus       249 ~~~~~~v~~~d~~~~~~~~~-------~~~------~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-  311 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILAK-------VAA------PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-  311 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEEE-------EEC------SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-
T ss_pred             eCCCCEEEEEECCCCcEEEE-------EEc------CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-
Confidence            64 58999999986643211       111      11   1369999999966554  37999999999999887764 


Q ss_pred             cccCCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578          395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVD  426 (440)
Q Consensus       395 ~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D  426 (440)
                       ....+.+++|+|++        ++|+.+..+
T Consensus       312 -~~~~~~~~~~s~dg--------~~l~v~~~~  334 (353)
T 3vgz_A          312 -TPTHPNSLALSADG--------KTLYVSVKQ  334 (353)
T ss_dssp             -CCSEEEEEEECTTS--------CEEEEEEEC
T ss_pred             -cCCCCCeEEEcCCC--------CEEEEEEcc
Confidence             34578999999998        655555544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=9.1e-23  Score=179.75  Aligned_cols=274  Identities=10%  Similarity=0.043  Sum_probs=184.7

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC-CCceEEEccCCCeEEEEeecCCcceEEeecccccccccccccc
Q 013578          104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG-PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ  182 (440)
Q Consensus       104 ~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (440)
                      ++|++++.++.|++||+.+++..    .....++.. .+..++|+|+++.++++...  ...+.+|+.........    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~----   71 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD----KVITIADAGPTPMVPMVAPGGRIAYATVNK--SESLVKIDLVTGETLGR----   71 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE----EEEECTTCTTCCCCEEECTTSSEEEEEETT--TTEEEEEETTTCCEEEE----
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE----EEEEcCCCCCCccceEEcCCCCEEEEEeCC--CCeEEEEECCCCCeEee----
Confidence            57999999999999999876421    112222222 58899999999988776644  34566676543311100    


Q ss_pred             CCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee------------CCceEEEEeCCCCceeeeeeCCCC
Q 013578          183 SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS------------EGTDISIWHGKTGKLLGNVDTNQL  250 (440)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------------~d~~i~vwd~~~~~~~~~~~~~~~  250 (440)
                               +..  ....   .....+..+.++++|+ .++++.            .++.|.+||+.+++.+..+.. ..
T Consensus        72 ---------~~~--~~~~---~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~  135 (337)
T 1pby_B           72 ---------IDL--STPE---ERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR  135 (337)
T ss_dssp             ---------EEC--CBTT---EEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred             ---------EEc--CCcc---cccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence                     000  0000   0011234456688998 555554            578999999999888877765 34


Q ss_pred             cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC---------
Q 013578          251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG---------  321 (440)
Q Consensus       251 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg---------  321 (440)
                      .+..++|+|++++|+++  ++.|++||+..++        ....+..+.. ...+.|+|++..|+..+.++         
T Consensus       136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~--------~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  204 (337)
T 1pby_B          136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGT--------LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             SCCCEEECTTSSCEEEE--SSSEEEEETTTTE--------EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             CcceeEECCCCCEEEEe--CCeEEEEECCCCc--------Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeec
Confidence            57889999999998888  6899999986543        2333332220 11237899988765554332         


Q ss_pred             ---------------cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCc
Q 013578          322 ---------------TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETG  386 (440)
Q Consensus       322 ---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~  386 (440)
                                     .|.+||+.++...        ....     ..+...+..++|+|+|++++++ ++.|++||+.++
T Consensus       205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~--------~~~~-----~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~  270 (337)
T 1pby_B          205 ARKDIDPADPTAYRTGLLTMDLETGEMA--------MREV-----RIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN  270 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEE--------EEEE-----EECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT
T ss_pred             cccccccccccccccceEEEeCCCCCce--------Eeec-----CCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCC
Confidence                           4688888765331        0110     1112335679999999999888 799999999999


Q ss_pred             cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          387 KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       387 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +.+..+.  ....+.+++|+|++        ++|++++.|+.|++||+.+++
T Consensus       271 ~~~~~~~--~~~~~~~~~~s~dg--------~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          271 ASIKRVP--LPHSYYSVNVSTDG--------STVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EEEEEEE--CSSCCCEEEECTTS--------CEEEEESBSSEEEEEETTTCC
T ss_pred             cCcceec--CCCceeeEEECCCC--------CEEEEEcCCCcEEEEECcCCc
Confidence            8877764  34568999999998        788888889999999998875

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=5.5e-22  Score=192.54  Aligned_cols=294  Identities=14%  Similarity=0.145  Sum_probs=188.4

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE  171 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~  171 (440)
                      ..|.+++|||| ++++.+ .|+.|++||+.++..      .....+...+.+++|+|||++++++. +   ..+++|+..
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~SpdG~~la~~~-~---~~i~v~~~~  149 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV------TYLFDTNEETASLDFSPVGDRVAYVR-N---HNLYIARGG  149 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE------EEEECCTTCCTTCEECTTSSEEEEEE-T---TEEEEEECB
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce------EEccCCcccccCCcCCCCCCEEEEEE-C---CeEEEEecC
Confidence            56999999999 666555 359999999987532      12223456789999999999999863 3   578888765


Q ss_pred             c-----ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee--------------------
Q 013578          172 K-----AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS--------------------  226 (440)
Q Consensus       172 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--------------------  226 (440)
                      .     .........    ......+... .....    ........++|||+ +|++++                    
T Consensus       150 ~~~~~~g~~~~~~~~----~~~~~~~g~~-~~~ee----~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~  219 (706)
T 2z3z_A          150 KLGEGMSRAIAVTID----GTETLVYGQA-VHQRE----FGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAE  219 (706)
T ss_dssp             CTTSCCCCCEESCSC----CBTTEEESSC-CGGGC----TTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCE
T ss_pred             cccccCCCcEEeccC----CCCCeEcccc-hhhhh----cCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCc
Confidence            4     211100000    0000000000 00000    00123455689999 555555                    


Q ss_pred             -------------CCceEEEEeCCCCceeeeee--CCCCcccEEEecCCCCeEEEEecCC-----CEEEEEeEecCCCce
Q 013578          227 -------------EGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTA-----DVKVWEIVYSKDGLV  286 (440)
Q Consensus       227 -------------~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~  286 (440)
                                   .+..|++||+.+++......  .+...+..++|+|||++|++++.++     .|++||+..+.    
T Consensus       220 ~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~----  295 (706)
T 2z3z_A          220 SKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR----  295 (706)
T ss_dssp             EEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC----
T ss_pred             eEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc----
Confidence                         44679999999887654432  3456688999999999999988775     89999976542    


Q ss_pred             eeeeeeeeeecccc---ceEEEEEcC--CCCEEEEEeCCCcEEEEecC-ccccccCCCCccccccccccCCCCCeeeeee
Q 013578          287 KAVTSVMQLKGHKS---AVTWLCFAP--NSEQIITASKDGTLRVWNIN-VRYHLDEDPKTLKVLPIPLLDSNGATLQYDR  360 (440)
Q Consensus       287 ~~~~~~~~~~~h~~---~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  360 (440)
                       ....+.. ..+..   .+.+++|+|  +|++|++++.|+.+++|++. .+..+       ..+       ..+...+..
T Consensus       296 -~~~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~-------~~l-------~~~~~~v~~  359 (706)
T 2z3z_A          296 -FVRTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI-------RQV-------TKGEWEVTN  359 (706)
T ss_dssp             -EEEEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE-------EEC-------CCSSSCEEE
T ss_pred             -eeeEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE-------Eec-------CCCCeEEEe
Confidence             0011111 11222   346789999  99999999999999999876 22111       111       122333555


Q ss_pred             -EEeCCCCCEEEEe-c-CC----EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC----CeE
Q 013578          361 -LSLSSDGKILAAT-H-GS----TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD----KKV  429 (440)
Q Consensus       361 -~~~s~~g~~l~~~-~-~~----~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D----g~i  429 (440)
                       ++|+|+|+.|+.+ . ++    .|+.||..+++ ...+  .|...+.+++|+|++        ++|+....+    +.|
T Consensus       360 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l--~~~~~~~~~~~spdg--------~~l~~~~~~~~~p~~i  428 (706)
T 2z3z_A          360 FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL--TPESGMHRTQLSPDG--------SAIIDIFQSPTVPRKV  428 (706)
T ss_dssp             EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES--CCSSSEEEEEECTTS--------SEEEEEEECSSCSCEE
T ss_pred             eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec--cCCCceEEEEECCCC--------CEEEEEecCCCCCcEE
Confidence             7999999977654 3 33    77788887776 3333  267789999999998        677665443    569


Q ss_pred             EEEeCCCCC
Q 013578          430 KLWLAPSLE  438 (440)
Q Consensus       430 ~vw~~~~~~  438 (440)
                      ++|++.+++
T Consensus       429 ~l~d~~~~~  437 (706)
T 2z3z_A          429 TVTNIGKGS  437 (706)
T ss_dssp             EEEESSSCE
T ss_pred             EEEECCCCe
Confidence            999997753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=8.1e-23  Score=185.15  Aligned_cols=215  Identities=13%  Similarity=0.119  Sum_probs=150.4

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc------ceee----EEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK------SFKF----LRINLPPGGPPTAVAFADNATSIVVATHN  159 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~------~~~~----~~~~~~~~~~v~~v~~~~~~~~l~~~~~~  159 (440)
                      +...++.+++++++.++++++.|+ ++||+.......      ....    ......+...|.+++|+|++++|+++   
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~---  110 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSAC---  110 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEE---
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEE---
Confidence            345689999999999999999998 999886421100      0000    00112234456677776665533211   


Q ss_pred             CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578          160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG  239 (440)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  239 (440)
                                                                                    ..+++.|+.|++||+.++
T Consensus       111 --------------------------------------------------------------~~sgs~d~~v~iwd~~~~  128 (434)
T 2oit_A          111 --------------------------------------------------------------MMSSEYGSIIAFFDVRTF  128 (434)
T ss_dssp             --------------------------------------------------------------EEETTTEEEEEEEEHHHH
T ss_pred             --------------------------------------------------------------EeccCCCceEEEEEcccc
Confidence                                                                          006788999999998654


Q ss_pred             --------ce---eeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578          240 --------KL---LGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF  307 (440)
Q Consensus       240 --------~~---~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (440)
                              +.   +..+..|...|.+++|+|+ +++|++++.||+|++||++...        ......+|...|.+++|
T Consensus       129 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~--------~~~~~~~~~~~v~~v~w  200 (434)
T 2oit_A          129 SNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV--------KVCATLPSTVAVTSVCW  200 (434)
T ss_dssp             HCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE--------EEEEEECGGGCEEEEEE
T ss_pred             ccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc--------ceeeccCCCCceeEEEE
Confidence                    22   3455668889999999998 8999999999999999997653        34455678999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C------CEEE
Q 013578          308 APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G------STLQ  379 (440)
Q Consensus       308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~------~~i~  379 (440)
                      +|+|++|++|+.||+|++||++ +...       ..+..+......+...+.+++|++++.++++..  +      ..++
T Consensus       201 spdg~~lasgs~dg~v~iwd~~-~~~~-------~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~  272 (434)
T 2oit_A          201 SPKGKQLAVGKQNGTVVQYLPT-LQEK-------KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV  272 (434)
T ss_dssp             CTTSSCEEEEETTSCEEEECTT-CCEE-------EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred             cCCCCEEEEEcCCCcEEEEccC-Cccc-------ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence            9999999999999999999997 2211       111111111123455789999999999887532  3      2489


Q ss_pred             EEEcCCc
Q 013578          380 WLSVETG  386 (440)
Q Consensus       380 i~d~~~~  386 (440)
                      +|++...
T Consensus       273 i~~l~~~  279 (434)
T 2oit_A          273 MALLPKK  279 (434)
T ss_dssp             EEECCCT
T ss_pred             EEEeccC
Confidence            9998765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=5.1e-22  Score=175.87  Aligned_cols=251  Identities=14%  Similarity=0.092  Sum_probs=173.2

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccc
Q 013578           96 GLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS  175 (440)
Q Consensus        96 ~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  175 (440)
                      ++++++++.++++++.+++|.+||+.+++..    .....+....+..++|+|+++.                       
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~s~dg~~-----------------------   56 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY----KSCVMPDKFGPGTAMMAPDNRT-----------------------   56 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEE----EEEECSSCCSSCEEEECTTSSE-----------------------
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEE----EEEecCCCCCCceeEECCCCCE-----------------------
Confidence            4578889999999999999999999876421    1111222125677888777653                       


Q ss_pred             cccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC------
Q 013578          176 TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ------  249 (440)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~------  249 (440)
                                                                   +++++..++.|.+||+.+++.+..+....      
T Consensus        57 ---------------------------------------------~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~   91 (349)
T 1jmx_B           57 ---------------------------------------------AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG   91 (349)
T ss_dssp             ---------------------------------------------EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred             ---------------------------------------------EEEEeCCCCcEEEEeCCCCcEEEEEEccccccccc
Confidence                                                         34445567889999999998877776432      


Q ss_pred             CcccEEEecCCCCeEEEEecC------------CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578          250 LKNNMAAISPNGRFLAAAAFT------------ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  317 (440)
                      ..+..++|+|+|++|++++.+            +.|.+||+..++..     ..+..+. +...+.+++|+|+|+ ++.+
T Consensus        92 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~-~~~~~~~~~~s~dg~-l~~~  164 (349)
T 1jmx_B           92 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-----KPVRTFP-MPRQVYLMRAADDGS-LYVA  164 (349)
T ss_dssp             ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-----CCSEEEE-CCSSCCCEEECTTSC-EEEE
T ss_pred             ccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc-----ceeeecc-CCCcccceeECCCCc-EEEc
Confidence            237889999999999999865            89999998654311     1122233 334688999999999 6665


Q ss_pred             eCCCcEEEEecCccccccCCCCcccc-----------------------c--ccccc-------------------CC-C
Q 013578          318 SKDGTLRVWNINVRYHLDEDPKTLKV-----------------------L--PIPLL-------------------DS-N  352 (440)
Q Consensus       318 ~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------------~--~~~~~-------------------~~-~  352 (440)
                      +.  .|.+||+.++............                       .  .....                   .. .
T Consensus       165 ~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  242 (349)
T 1jmx_B          165 GP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT  242 (349)
T ss_dssp             SS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred             cC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccC
Confidence            44  4999999876543221110000                       0  00000                   00 0


Q ss_pred             ---------CCeeeeeeEEeCC-CCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEE
Q 013578          353 ---------GATLQYDRLSLSS-DGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT  422 (440)
Q Consensus       353 ---------~~~~~v~~~~~s~-~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t  422 (440)
                               .....+..++|+| +|++++++ ++.|++||+.+++.+..+.  ....+.+++|+|++        ++|++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg--------~~l~~  311 (349)
T 1jmx_B          243 GKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKG--------DKLYL  311 (349)
T ss_dssp             CCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSS--------SCEEE
T ss_pred             CcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEc--CCCCccceEECCCC--------CEEEE
Confidence                     0011345788899 99999988 8999999999998877764  34457899999998        77888


Q ss_pred             eeCCCeEEEEeCCCCC
Q 013578          423 SSVDKKVKLWLAPSLE  438 (440)
Q Consensus       423 ~~~Dg~i~vw~~~~~~  438 (440)
                      ++.++.|++||+.+++
T Consensus       312 ~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          312 GGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             ESBSSEEEEEETTTTE
T ss_pred             ecCCCeEEEEeccccc
Confidence            8889999999998764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=9.2e-22  Score=174.07  Aligned_cols=259  Identities=15%  Similarity=0.186  Sum_probs=163.8

Q ss_pred             cccCcceeEEEEccCCCEEEEeeC---CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578           88 KGHGDSVTGLCFSSDGKCLATACA---DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS  164 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t~s~---dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~  164 (440)
                      ..+...+..++|+|||+ |++++.   ++.|.+|++.++...   .+.....+...+..++|+|+++++++++       
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---~~~~~~~~~~~p~~~a~spdg~~l~~~~-------  104 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---KLNTVVAPGTPPAYVAVDEARQLVYSAN-------  104 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---EEEEEEEESCCCSEEEEETTTTEEEEEE-------
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---EeeeeecCCCCCEEEEECCCCCEEEEEe-------
Confidence            45667888999999999 555544   689999999765422   2222223456788899988877544332       


Q ss_pred             EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cc--e
Q 013578          165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GK--L  241 (440)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~--~  241 (440)
                                                                                   ..++.|.+|++.. +.  .
T Consensus       105 -------------------------------------------------------------~~~~~v~v~~~~~~g~~~~  123 (347)
T 3hfq_A          105 -------------------------------------------------------------YHKGTAEVMKIAADGALTL  123 (347)
T ss_dssp             -------------------------------------------------------------TTTTEEEEEEECTTSCEEE
T ss_pred             -------------------------------------------------------------CCCCEEEEEEeCCCCCeee
Confidence                                                                         2456677777742 22  2


Q ss_pred             eeeeeC---------CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc-ccceEEEEEcCCC
Q 013578          242 LGNVDT---------NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH-KSAVTWLCFAPNS  311 (440)
Q Consensus       242 ~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~  311 (440)
                      +..+..         ....+.+++|+|+|+++++...++.|.+|++...  +...   ....+..+ ...+..++|+|+|
T Consensus       124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~--g~~~---~~~~~~~~~g~~p~~~~~spdg  198 (347)
T 3hfq_A          124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA--GQLS---EQSVLTMEAGFGPRHLVFSPDG  198 (347)
T ss_dssp             EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT--SCEE---EEEEEECCTTCCEEEEEECTTS
T ss_pred             cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC--CcEE---EeeeEEcCCCCCCceEEECCCC
Confidence            222221         1224678999999996666666889999999722  1111   11222222 2357889999999


Q ss_pred             CEEEE-EeCCCcEEEEecCc--cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEcCCc
Q 013578          312 EQIIT-ASKDGTLRVWNINV--RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVETG  386 (440)
Q Consensus       312 ~~l~s-~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~~~~  386 (440)
                      ++|++ ...++.|.+|++..  +...     ........ .........+..++|+|||++|+++  .++.|.+|++...
T Consensus       199 ~~l~v~~~~~~~v~v~~~~~~~g~~~-----~~~~~~~~-~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~  272 (347)
T 3hfq_A          199 QYAFLAGELSSQIASLKYDTQTGAFT-----QLGIVKTI-PADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD  272 (347)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEE-----EEEEEESS-CTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCceE-----Eeeeeeec-CCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence            96665 55788999999874  2110     00000000 0001112346789999999977543  3799999999732


Q ss_pred             ---cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC-CCeEEEEeC--CCCC
Q 013578          387 ---KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV-DKKVKLWLA--PSLE  438 (440)
Q Consensus       387 ---~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~vw~~--~~~~  438 (440)
                         +.+..+ ..+...+.+++|+|++        ++|++++. ++.|.+|++  .+++
T Consensus       273 g~~~~~~~~-~~~~~~~~~~~~spdg--------~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          273 GHLTLIQQI-STEGDFPRDFDLDPTE--------AFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             GCEEEEEEE-ECSSSCCCEEEECTTS--------SEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CcEEEeEEE-ecCCCCcCeEEECCCC--------CEEEEEEcCCCcEEEEEEeCCCCe
Confidence               333344 3456678999999998        77777765 589999954  4443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=3.4e-22  Score=201.62  Aligned_cols=290  Identities=14%  Similarity=0.026  Sum_probs=206.4

Q ss_pred             cCcceeEEEEc-cCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC-CCceEEEccCCCeEEEEeecCCcceEE-
Q 013578           90 HGDSVTGLCFS-SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG-PPTAVAFADNATSIVVATHNLSGCSLY-  166 (440)
Q Consensus        90 H~~~V~~l~~s-~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~~~~~~~~~~-  166 (440)
                      |...|.+++|+ |||++|++++ ++.|.+|++..+..      .....+.. .+..++|+ +++.+++++.+   ..++ 
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~s-dg~~l~~~s~~---~~l~~  362 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV------LKVPEPLRIRYVRRGGD-TKVAFIHGTRE---GDFLG  362 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE------EECSCCSCEEEEEECSS-SEEEEEEEETT---EEEEE
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce------EEccCCCcceEEeeeEc-CCCeEEEEECC---CceEE
Confidence            55679999999 9999999988 78999999876531      12334445 78899999 99999988763   4566 


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD  246 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  246 (440)
                      +++.......              ..   ..+..       ......++|+|+ .|++++.++.|++||+.+++....+.
T Consensus       363 ~~d~~~~~~~--------------~l---~~~~~-------~~~~~~~SpDG~-~la~~~~~~~v~~~d~~tg~~~~~~~  417 (1045)
T 1k32_A          363 IYDYRTGKAE--------------KF---EENLG-------NVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIER  417 (1045)
T ss_dssp             EEETTTCCEE--------------EC---CCCCC-------SEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCce--------------Ee---cCCcc-------ceeeeEECCCCC-EEEEECCCCeEEEEECCCCceEEecc
Confidence            6654432100              00   00101       112234589998 88888999999999999998887777


Q ss_pred             CCCCcccEEEecCCCCeEEEEecCC----------CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEE
Q 013578          247 TNQLKNNMAAISPNGRFLAAAAFTA----------DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT  316 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  316 (440)
                      .+...+..++|+|||++|++++.++          .|++||+..+         ....+..|...+.+++|+|+|++|++
T Consensus       418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---------~~~~l~~~~~~~~~~~~spdG~~l~~  488 (1045)
T 1k32_A          418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---------KIFAATTENSHDYAPAFDADSKNLYY  488 (1045)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---------EEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC---------cEEEeeCCCcccCCceEcCCCCEEEE
Confidence            8888899999999999999887654          8999998543         24556678888999999999999999


Q ss_pred             EeCCCcEEEEecCccccccCCC----------Ccccc--------------c-----cccccCCCCCeeeeeeEEeCCCC
Q 013578          317 ASKDGTLRVWNINVRYHLDEDP----------KTLKV--------------L-----PIPLLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       317 ~~~dg~i~iwd~~~~~~~~~~~----------~~~~~--------------~-----~~~~~~~~~~~~~v~~~~~s~~g  367 (440)
                      ++.++..++|+...........          .....              +     .........+...+..++++|||
T Consensus       489 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg  568 (1045)
T 1k32_A          489 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS  568 (1045)
T ss_dssp             EESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE
T ss_pred             EecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC
Confidence            9998888888865332210000          00000              0     00011112234557889999999


Q ss_pred             CEEEE------------e--cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          368 KILAA------------T--HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       368 ~~l~~------------~--~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      +++++            +  ....|++||+.+++... + .   ..+.+++|+||+        ++|++++.| .|++|+
T Consensus       569 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-~---~~v~~~~~S~DG--------~~l~~~~~~-~i~~~d  634 (1045)
T 1k32_A          569 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-V-K---NNLTDLRLSADR--------KTVMVRKDD-GKIYTF  634 (1045)
T ss_dssp             EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-E-E---EEEEEEEECTTS--------CEEEEEETT-SCEEEE
T ss_pred             eEEEEecccCcccccccccCCCceEEEEECCCCcEEE-e-e---cCcceEEECCCC--------CEEEEEcCC-cEEEEe
Confidence            97775            1  14588999998887532 2 1   568899999999        889988866 799999


Q ss_pred             CCCCC
Q 013578          434 APSLE  438 (440)
Q Consensus       434 ~~~~~  438 (440)
                      +.+++
T Consensus       635 ~~~~~  639 (1045)
T 1k32_A          635 PLEKP  639 (1045)
T ss_dssp             ESSCT
T ss_pred             CccCc
Confidence            98876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=3.8e-21  Score=169.80  Aligned_cols=283  Identities=14%  Similarity=0.159  Sum_probs=174.5

Q ss_pred             cccCcceeEEEEccCCCEEEEeeCC-CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           88 KGHGDSVTGLCFSSDGKCLATACAD-GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t~s~d-g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      ..|...+.+++|+|+|++|++++.+ +.|++|+++....... ....... ...+..++|+|+++++++++..  ...+.
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~i~  109 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT-FAAESAL-PGSLTHISTDHQGQFVFVGSYN--AGNVS  109 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE-EEEEEEC-SSCCSEEEECTTSSEEEEEETT--TTEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee-ecccccc-CCCCcEEEEcCCCCEEEEEecC--CCeEE
Confidence            3577889999999999999998876 9999999983222211 1111112 2478999999999998887754  23456


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cceee--
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GKLLG--  243 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~--  243 (440)
                      +|+......                     ............+..+.++|+++.+++++..++.|++||+.+ ++...  
T Consensus       110 ~~d~~~~~~---------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  168 (343)
T 1ri6_A          110 VTRLEDGLP---------------------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD  168 (343)
T ss_dssp             EEEEETTEE---------------------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred             EEECCCCcc---------------------ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence            665421100                     000000111112344556899985555554889999999987 54432  


Q ss_pred             --eeeC-CCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeecc---ccceEEEEEcCCCCEEEE
Q 013578          244 --NVDT-NQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGH---KSAVTWLCFAPNSEQIIT  316 (440)
Q Consensus       244 --~~~~-~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s  316 (440)
                        .+.. ....+..++|+|+++++++++ .++.|.+|++.... +..........+...   ...+.+++|+|++++|+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v  247 (343)
T 1ri6_A          169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH-GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA  247 (343)
T ss_dssp             EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT-SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred             ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC-CcEEEEeeccccCccccccCCccceEECCCCCEEEE
Confidence              2222 234677899999999776665 78999999985422 111111112212211   345778999999988774


Q ss_pred             -EeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEE--cCCccc--h
Q 013578          317 -ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLS--VETGKV--L  389 (440)
Q Consensus       317 -~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d--~~~~~~--~  389 (440)
                       +..++.|.+||+.....      ......  ...  .+. .+..++|+|+|++|+++.  ++.+.+|+  ..+++.  +
T Consensus       248 ~~~~~~~i~v~d~~~~~~------~~~~~~--~~~--~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~  316 (343)
T 1ri6_A          248 CDRTASLITVFSVSEDGS------VLSKEG--FQP--TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK  316 (343)
T ss_dssp             EETTTTEEEEEEECTTSC------CEEEEE--EEE--CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred             EecCCCEEEEEEEcCCCC------ceEEee--eec--CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEc
Confidence             45789999999973110      000000  000  111 166899999999887765  68999994  446643  3


Q ss_pred             hhhhccccCCeEEEEecCCC
Q 013578          390 DTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       390 ~~~~~~h~~~v~~v~~~~~~  409 (440)
                      ..+.  ......+++|.++.
T Consensus       317 ~~~~--~g~~p~~i~~~~~~  334 (343)
T 1ri6_A          317 GRYA--VGQGPMWVVVNAHE  334 (343)
T ss_dssp             EEEE--CSSSCCEEEEEEEC
T ss_pred             cccc--cCCCCeeEEEEccc
Confidence            3332  23457778887764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=2.7e-21  Score=166.93  Aligned_cols=226  Identities=11%  Similarity=0.078  Sum_probs=161.5

Q ss_pred             EeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCC
Q 013578          108 TACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPG  187 (440)
Q Consensus       108 t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (440)
                      +++.|++|++||+.++...      ....+...+.+++|+|+++++                                  
T Consensus        17 ~~~~~~~i~~~d~~~~~~~------~~~~~~~~v~~~~~spdg~~l----------------------------------   56 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR------VVWQTPELFEAPNWSPDGKYL----------------------------------   56 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE------EEEEESSCCEEEEECTTSSEE----------------------------------
T ss_pred             CCCcceeEEEEeCCCCcee------eeccCCcceEeeEECCCCCEE----------------------------------
Confidence            4568899999999876422      222356789999999987743                                  


Q ss_pred             CceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-CceeeeeeCC-CCcccEEEecCCCCeEE
Q 013578          188 PEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GKLLGNVDTN-QLKNNMAAISPNGRFLA  265 (440)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~-~~~v~~~~~s~~~~~l~  265 (440)
                                                         ++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|+
T Consensus        57 -----------------------------------~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  100 (297)
T 2ojh_A           57 -----------------------------------LLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYA  100 (297)
T ss_dssp             -----------------------------------EEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEE
T ss_pred             -----------------------------------EEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEE
Confidence                                               3333 56799999998 7776666554 36788999999999999


Q ss_pred             EEe--cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE-EEeCCCcEEEEecCccccccCCCCccc
Q 013578          266 AAA--FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNINVRYHLDEDPKTLK  342 (440)
Q Consensus       266 ~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~  342 (440)
                      +++  .++...||.+.....       ....+..+ ..+..++|+|++++|+ +++.|+.+++|+++....      .. 
T Consensus       101 ~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~------~~-  165 (297)
T 2ojh_A          101 ISDKVEFGKSAIYLLPSTGG-------TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG------VE-  165 (297)
T ss_dssp             EEECTTTSSCEEEEEETTCC-------CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC------CE-
T ss_pred             EEEeCCCCcceEEEEECCCC-------ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC------cc-
Confidence            998  446788887754321       12233333 3488999999999877 778899999999753210      00 


Q ss_pred             cccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcC-CccchhhhhccccCCeEEEEecCCCCCCCCCcceE
Q 013578          343 VLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVE-TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSV  419 (440)
Q Consensus       343 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~  419 (440)
                            .....+...+..++|+|+|++|+.+.  ++.+++|++. .+..+..+ ..|...+.+++|+|++        ++
T Consensus       166 ------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg--------~~  230 (297)
T 2ojh_A          166 ------TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSG--------DK  230 (297)
T ss_dssp             ------EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTS--------SE
T ss_pred             ------eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE-ecCCcccCCeEECCCC--------CE
Confidence                  01112334578899999999877643  7888888875 44455555 4677889999999998        78


Q ss_pred             EEEeeCC-----------CeEEEEeCCCCCC
Q 013578          420 LATSSVD-----------KKVKLWLAPSLES  439 (440)
Q Consensus       420 l~t~~~D-----------g~i~vw~~~~~~~  439 (440)
                      |++++.+           +.|++|++.+++.
T Consensus       231 l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          231 VVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             EEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            8888766           5699999987653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=9.6e-22  Score=191.95  Aligned_cols=292  Identities=11%  Similarity=0.083  Sum_probs=188.2

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCC---CCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDA---SSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY  168 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~---~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~  168 (440)
                      ..|.+++|||||++|++++. +.|++||+.++   ...      ....+...+..++|+|||++|++++.+    .+++|
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~------~l~~~~~~~~~~~~SPDG~~la~~~~~----~i~~~  177 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR------QLTHGEGFATDAKLSPKGGFVSFIRGR----NLWVI  177 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC------BCCCSSSCEEEEEECTTSSEEEEEETT----EEEEE
T ss_pred             cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE------EcccCCcccccccCCCCCCEEEEEeCC----cEEEE
Confidence            34899999999999999986 89999999876   321      233455778999999999999988743    67888


Q ss_pred             ccccccccccccccCC-CCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCc------------------
Q 013578          169 GEEKAISTNEGKQQSK-LPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGT------------------  229 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~------------------  229 (440)
                      +............... .......|-....        ........++|||+ .|+.++.|+                  
T Consensus       178 d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~--------~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~  248 (741)
T 2ecf_A          178 DLASGRQMQLTADGSTTIGNGIAEFVADEE--------MDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDV  248 (741)
T ss_dssp             ETTTTEEEECCCCCCSSEEESCCCHHHHHH--------SCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred             ecCCCCEEEeccCCccceeccccceeeeec--------cccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccc
Confidence            7654321100000000 0000000000000        00123456689999 555555443                  


Q ss_pred             ---------------eEEEEeCCC-Cceeeeee--CCCCcccEEEecCCCCeEEEEec-----CCCEEEEEeEecCCCce
Q 013578          230 ---------------DISIWHGKT-GKLLGNVD--TNQLKNNMAAISPNGRFLAAAAF-----TADVKVWEIVYSKDGLV  286 (440)
Q Consensus       230 ---------------~i~vwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~  286 (440)
                                     .|++||+.+ ++......  .+...+..++| |||++|++++.     +..|++||+..+.    
T Consensus       249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~----  323 (741)
T 2ecf_A          249 IEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ----  323 (741)
T ss_dssp             EEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC----
T ss_pred             eEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc----
Confidence                           789999988 77654332  35667889999 99999998764     4678999976543    


Q ss_pred             eeeeeeeeeecccc----ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE-
Q 013578          287 KAVTSVMQLKGHKS----AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL-  361 (440)
Q Consensus       287 ~~~~~~~~~~~h~~----~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-  361 (440)
                          ....+..+..    .+.+++|+|||+++++++.||.++||.+....      . ...       ...+...+..+ 
T Consensus       324 ----~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~------~-~~~-------l~~~~~~v~~~~  385 (741)
T 2ecf_A          324 ----QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG------K-AAA-------LTHGNWSVDELL  385 (741)
T ss_dssp             ----EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS------C-EEE-------SCCSSSCEEEEE
T ss_pred             ----eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC------C-eee-------eeecceEEEeEe
Confidence                2233333332    45689999999999999999988888775211      0 111       11223345566 


Q ss_pred             EeCCCCCEEEE-ec-CC--EEEEEEcCC-ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC----CeEEEE
Q 013578          362 SLSSDGKILAA-TH-GS--TLQWLSVET-GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD----KKVKLW  432 (440)
Q Consensus       362 ~~s~~g~~l~~-~~-~~--~i~i~d~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D----g~i~vw  432 (440)
                      .|+|+|+.|+. +. ++  .+++|++.. +.....+.  +...+..++|+|++        ++|+....+    ..+.+|
T Consensus       386 ~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~--~~~~~~~~~~spdg--------~~l~~~~~~~~~p~~~~l~  455 (741)
T 2ecf_A          386 AVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS--KAPGMHSASFARNA--------SVYVDSWSNNSTPPQIELF  455 (741)
T ss_dssp             EEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC--CSCSEEEEEECTTS--------SEEEEEEEETTEEEEEEEE
T ss_pred             EEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc--cCCCceEEEECCCC--------CEEEEEecCCCCCCeEEEE
Confidence            69999997764 44 34  889999864 55555553  36678999999998        666654433    468888


Q ss_pred             eCCC
Q 013578          433 LAPS  436 (440)
Q Consensus       433 ~~~~  436 (440)
                      +...
T Consensus       456 ~~~~  459 (741)
T 2ecf_A          456 RANG  459 (741)
T ss_dssp             ETTS
T ss_pred             EcCC
Confidence            8653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=7.6e-21  Score=172.23  Aligned_cols=166  Identities=14%  Similarity=0.162  Sum_probs=128.3

Q ss_pred             ccCcceeEEEEccCCCEEE----EeeCCCcEEEEecCCC-----CC-cceeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578           89 GHGDSVTGLCFSSDGKCLA----TACADGVIRVHKLDDA-----SS-KSFKFLRINLPPGGPPTAVAFADNATSIVVATH  158 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~----t~s~dg~v~vW~~~~~-----~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  158 (440)
                      .|.+.|++++|+|+|++|+    +|+.|++|+|||+.+.     .. ..........+|...|.+++|+|+..       
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-------  162 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP-------  162 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT-------
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC-------
Confidence            3567899999999999999    8999999999998754     11 11223445556778899999988621       


Q ss_pred             cCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC
Q 013578          159 NLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT  238 (440)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~  238 (440)
                                                                                  . ++++++.|++|++||+++
T Consensus       163 ------------------------------------------------------------~-~las~s~Dg~v~iwD~~~  181 (434)
T 2oit_A          163 ------------------------------------------------------------S-MVAVCLADGSIAVLQVTE  181 (434)
T ss_dssp             ------------------------------------------------------------T-EEEEEETTSCEEEEEESS
T ss_pred             ------------------------------------------------------------C-EEEEEECCCeEEEEEcCC
Confidence                                                                        1 788899999999999999


Q ss_pred             CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-------ccccceEEEEEcCCC
Q 013578          239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-------GHKSAVTWLCFAPNS  311 (440)
Q Consensus       239 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~p~~  311 (440)
                      +..+.....|...+.+++|+|+|++|++|+.||.|++||++ +.        ....+.       .|...|.+++|++++
T Consensus       182 ~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~--------~~~~~~~~~~~~~~~~~~v~~v~w~~~~  252 (434)
T 2oit_A          182 TVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ--------EKKVIPCPPFYESDHPVRVLDVLWIGTY  252 (434)
T ss_dssp             SEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC--------EEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred             CcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc--------ccccccCCcccCCCCceeEEEEEEecCc
Confidence            87776667788899999999999999999999999999986 22        112222       234489999999988


Q ss_pred             CEEEEE-eCCCc------EEEEecCcc
Q 013578          312 EQIITA-SKDGT------LRVWNINVR  331 (440)
Q Consensus       312 ~~l~s~-~~dg~------i~iwd~~~~  331 (440)
                      .++++. +.||.      +++|+++..
T Consensus       253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          253 VFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             eEEEEEccCCCccCCCCceEEEEeccC
Confidence            877543 34433      899999854

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=2e-20  Score=165.94  Aligned_cols=247  Identities=15%  Similarity=0.123  Sum_probs=178.0

Q ss_pred             CCCceEEEccCCCeEEEEeecCC----cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccccc
Q 013578          139 GPPTAVAFADNATSIVVATHNLS----GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYG  214 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (440)
                      ..+..++|+|+++++++++.++.    ...+++|+......                        ...+.....+..+.+
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~------------------------~~~~~~~~~~~~~~~   96 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV------------------------TQAIHNDLKPFGATI   96 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE------------------------EEEEEESSCCCSEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE------------------------EEEEecCCCcceEEE
Confidence            56788999999999988875532    35677776544311                        111111122344556


Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc---------ccEEEecCCCCeEEEEe--cCCCEEEEEeEecCC
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK---------NNMAAISPNGRFLAAAA--FTADVKVWEIVYSKD  283 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~  283 (440)
                      +++|+.+++++..++.|.+||..+++.+..+..+...         +..++|+|+++++++++  .++.|.+||+...+ 
T Consensus        97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~-  175 (353)
T 3vgz_A           97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK-  175 (353)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-
T ss_pred             CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-
Confidence            8899877777788899999999999988887764322         57899999999888876  47889999986543 


Q ss_pred             CceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          284 GLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       284 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                             ....+..+...+.+++|+|++++|++++.++.|.+||+.++.....       +.   ....++...+..++|
T Consensus       176 -------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~-------~~---~~~~~~~~~~~~~~~  238 (353)
T 3vgz_A          176 -------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR-------KK---LLDDGKEHFFINISL  238 (353)
T ss_dssp             -------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE-------EE---CCCSSSCCCEEEEEE
T ss_pred             -------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE-------EE---cCCCCCCcccceEEE
Confidence                   3444544555688999999999999999999999999987654321       11   011122334677999


Q ss_pred             CCCCCEEEEec--CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce-EEEEeeCCCeEEEEeCCCCC
Q 013578          364 SSDGKILAATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS-VLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       364 s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +|+|++++++.  ++.|.+||..+++.+..+.. +.  ...++|+|++        + ++++...++.|.+||+.+++
T Consensus       239 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~--~~~~~~s~dg--------~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          239 DTARQRAFITDSKAAEVLVVDTRNGNILAKVAA-PE--SLAVLFNPAR--------NEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             ETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC-SS--CCCEEEETTT--------TEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc-CC--CceEEECCCC--------CEEEEEECCCCeEEEEECCCCe
Confidence            99999776654  58999999999998877642 22  3679999998        5 45555579999999998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=3.1e-20  Score=180.81  Aligned_cols=296  Identities=8%  Similarity=0.020  Sum_probs=181.8

Q ss_pred             CCCCCcccCccc----cccccccCc---ceeEEEEccCCCEEEEeeCC---------CcEEEEecCCCCCcceeeEEecC
Q 013578           72 DKDQNKRHHPLD----VNTLKGHGD---SVTGLCFSSDGKCLATACAD---------GVIRVHKLDDASSKSFKFLRINL  135 (440)
Q Consensus        72 ~~~~~~~~~~~~----~~~l~~H~~---~V~~l~~s~dg~~l~t~s~d---------g~v~vW~~~~~~~~~~~~~~~~~  135 (440)
                      +.++..+.|+..    ...+.+|..   .|.+++|||||++|++++.+         +.+.+||+.++...   .+....
T Consensus        34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~~~~  110 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ---SLDPPE  110 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE---ECCCTT
T ss_pred             eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE---eccCCc
Confidence            456677777542    345556654   49999999999999999875         77889999877531   122223


Q ss_pred             CCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEee--------
Q 013578          136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLF--------  207 (440)
Q Consensus       136 ~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  207 (440)
                      .+...+..++|+|||+.|+.++.    ..+++|+.............               ..........        
T Consensus       111 ~~~~~~~~~~~SPdG~~la~~~~----~~i~~~~~~~g~~~~~~~~~---------------~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A          111 VSNAKLQYAGWGPKGQQLIFIFE----NNIYYCAHVGKQAIRVVSTG---------------KEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             CCSCCCSBCCBCSSTTCEEEEET----TEEEEESSSSSCCEEEECCC---------------BTTTEEEEECCHHHHHTT
T ss_pred             cccccccccEECCCCCEEEEEEC----CeEEEEECCCCceEEEecCC---------------CCCceECcccceeEEEEe
Confidence            34445899999999999999875    36888876543211000000               0000000000        


Q ss_pred             --cccccccCCCCCeEEEEeeCC----------------------------------ceEEEEeCCCCceeeeeeCC---
Q 013578          208 --GASATYGTADGSTIIASCSEG----------------------------------TDISIWHGKTGKLLGNVDTN---  248 (440)
Q Consensus       208 --~~~~~~~~~~~~~~l~s~~~d----------------------------------~~i~vwd~~~~~~~~~~~~~---  248 (440)
                        ......++|||+ .|+.++.+                                  ..|++||+.+++....+..+   
T Consensus       172 ~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~  250 (723)
T 1xfd_A          172 LKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP  250 (723)
T ss_dssp             SSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred             ccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence              012355689998 55555433                                  27999999988765555543   


Q ss_pred             ---CCcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeeeeec-cccceE----EEEEcCCCCEEEE
Q 013578          249 ---QLKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVT----WLCFAPNSEQIIT  316 (440)
Q Consensus       249 ---~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~----~~~~~p~~~~l~s  316 (440)
                         ...+..++|+|||++|++....    ..|++||+..++        ....+.. +...+.    .++|+|||+.|+.
T Consensus       251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  322 (723)
T 1xfd_A          251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV--------CTKKHEDESEAWLHRQNEEPVFSKDGRKFFF  322 (723)
T ss_dssp             GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC--------EEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred             CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc--------ceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence               5567889999999998777543    468899975543        2222222 334443    7899999997775


Q ss_pred             --EeCCC------cEEEEec-CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cC---CEEEEEEc
Q 013578          317 --ASKDG------TLRVWNI-NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HG---STLQWLSV  383 (440)
Q Consensus       317 --~~~dg------~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~---~~i~i~d~  383 (440)
                        +..++      .|.+||+ .++..     .....+     . .++......++|+|||+.|+.. .+   +.+++|++
T Consensus       323 ~~~~~~~~~~~~~~l~~~d~~~~~~~-----~~~~~l-----~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  391 (723)
T 1xfd_A          323 IRAIPQGGRGKFYHITVSSSQPNSSN-----DNIQSI-----T-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA  391 (723)
T ss_dssp             EEEECCSSSSCEEEEEEECSSCCSSS-----CCCCBS-----C-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred             EEecccCCCcceeEEEEEeccCCCCc-----cceeEe-----e-cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence              44666      4666773 32210     000111     0 1111112236999999988754 33   78899988


Q ss_pred             CCcc--chhhhhcc--ccCCeEEEEecCCC
Q 013578          384 ETGK--VLDTAEKA--HEGEITCMAWAPKT  409 (440)
Q Consensus       384 ~~~~--~~~~~~~~--h~~~v~~v~~~~~~  409 (440)
                      ....  ....+...  |...+..++|+|++
T Consensus       392 ~~~~~~~~~~l~~~~~~~~~~~~~~~spdg  421 (723)
T 1xfd_A          392 NTVGNFNRQCLSCDLVENCTYFSASFSHSM  421 (723)
T ss_dssp             CSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred             eCCCCCCcceecccccCCCCeEEEEECCCC
Confidence            6432  33333211  67779999999998

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=3.4e-20  Score=162.83  Aligned_cols=264  Identities=11%  Similarity=0.060  Sum_probs=165.4

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      ..+..+...+ +++|+|||++|++++. ++.|.+||+.++...    ......+..+..+++|+|+++++++...++...
T Consensus        34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  108 (331)
T 3u4y_A           34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK----VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPF  108 (331)
T ss_dssp             EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----EEEEEECSSCCCCEEECTTSSEEEECCCSSSSC
T ss_pred             eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----EEecccCCCCccceEECCCCCEEEEecCCCCcc
Confidence            3444556667 9999999997776665 899999999876531    122222334444499999999999433332222


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce-EEEEeCCCCcee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD-ISIWHGKTGKLL  242 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~  242 (440)
                      .+.+|+........                        .+.....+..+.++|+|+.+++++..++. |.+|++.....+
T Consensus       109 ~i~v~d~~~~~~~~------------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~  164 (331)
T 3u4y_A          109 NMQSYSFLKNKFIS------------------------TIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL  164 (331)
T ss_dssp             EEEEEETTTTEEEE------------------------EEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE
T ss_pred             cEEEEECCCCCeEE------------------------EEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE
Confidence            67777764432110                        01111122345568999867777777788 999998754432


Q ss_pred             e----eeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578          243 G----NVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       243 ~----~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  317 (440)
                      .    ...........++|+|+|+++++++ .++.|++||+..++.     ...+..+. ....+.+++|+|+|++|+.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-----~~~~~~~~-~~~~~~~~~~spdg~~l~v~  238 (331)
T 3u4y_A          165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-----ITLLNAVG-TNNLPGTIVVSRDGSTVYVL  238 (331)
T ss_dssp             EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-----CEEEEEEE-CSSCCCCEEECTTSSEEEEE
T ss_pred             eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-----cceeeecc-CCCCCceEEECCCCCEEEEE
Confidence            1    1112344578899999999766655 588999999875541     00133444 33667899999999977665


Q ss_pred             e-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-c-CCEEEEEEcCCccc
Q 013578          318 S-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-H-GSTLQWLSVETGKV  388 (440)
Q Consensus       318 ~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~-~~~i~i~d~~~~~~  388 (440)
                      + .++.|.+||+.++....     ...+................++|+|||++|+++ . ++.|.+||+.....
T Consensus       239 ~~~~~~i~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          239 TESTVDVFNFNQLSGTLSF-----VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             CSSEEEEEEEETTTTEEEE-----EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             EcCCCEEEEEECCCCceee-----ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            4 57789999998765410     000000000000111112468999999987654 3 67999999987654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=3.8e-19  Score=158.16  Aligned_cols=287  Identities=12%  Similarity=0.148  Sum_probs=174.5

Q ss_pred             cCcceeEEEEccCCCEEEEeeCC----CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           90 HGDSVTGLCFSSDGKCLATACAD----GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~d----g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      |...+..++|+|||++|++++.+    +.|.+|+++...... ..+.....+...+..+++  ++++++++...  ...+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~-~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~--~~~v  122 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL-HLLNTQKTMGADPCYLTT--NGKNIVTANYS--GGSI  122 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE-EEEEEEECSSSCEEEEEE--CSSEEEEEETT--TTEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE-EEeeEeccCCCCcEEEEE--CCCEEEEEECC--CCEE
Confidence            67788899999999999999886    799999997642221 122222223455677777  88888887654  3455


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce----
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL----  241 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~----  241 (440)
                      .+|+....................  .......       ...+..+.++|+|+.+++++..++.|++|++.....    
T Consensus       123 ~~~~~~~~g~~~~~~~~~~~~g~~--~~~~~~~-------~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~  193 (361)
T 3scy_A          123 TVFPIGQDGALLPASDVIEFKGSG--PDKERQT-------MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK  193 (361)
T ss_dssp             EEEEBCTTSCBCSCSEEEECCCCC--SCTTTCS-------SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred             EEEEeCCCCcCcccceeEEccCCC--CCccccC-------CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence            566543221110000000000000  0000000       001123456899996667776788999998775431    


Q ss_pred             --e-------eeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC
Q 013578          242 --L-------GNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS  311 (440)
Q Consensus       242 --~-------~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  311 (440)
                        +       ............++|+|+|+++++++ .++.|.+|++..+.   ......+.....+.....+++|+|+|
T Consensus       194 ~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~---~~~~~~~~~~~~~~~~~~~i~~spdg  270 (361)
T 3scy_A          194 EKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM---LDEIQTVAADTVNAQGSGDIHLSPDG  270 (361)
T ss_dssp             CCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE---EEEEEEEESCSSCCCCEEEEEECTTS
T ss_pred             cceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc---eEEeEEEecCCCCCCCcccEEECCCC
Confidence              1       11122344567899999999888887 58999999997332   12222222333344557899999999


Q ss_pred             CEEEEEeCC--CcEEEEecCc--cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEE--Ec
Q 013578          312 EQIITASKD--GTLRVWNINV--RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWL--SV  383 (440)
Q Consensus       312 ~~l~s~~~d--g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~--d~  383 (440)
                      ++|+++..+  +.|.+|++..  +..     .....+  .   .   ...+..++|+|||++|+++.  ++.|.+|  |.
T Consensus       271 ~~l~v~~~~~~~~i~v~~~~~~~g~~-----~~~~~~--~---~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          271 KYLYASNRLKADGVAIFKVDETNGTL-----TKVGYQ--L---T---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             SEEEEEECSSSCEEEEEEECTTTCCE-----EEEEEE--E---C---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             CEEEEECCCCCCEEEEEEEcCCCCcE-----EEeeEe--c---C---CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence            998776654  8999999962  210     000000  0   0   12356799999999888764  6889995  55


Q ss_pred             CCccchhhhhccccCCeEEEEec
Q 013578          384 ETGKVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       384 ~~~~~~~~~~~~h~~~v~~v~~~  406 (440)
                      .+++........+...+.|+.|.
T Consensus       338 ~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          338 ATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCcEeecceeeeCCCCeEEEEc
Confidence            67776554433456689999886

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=1.1e-20  Score=183.55  Aligned_cols=285  Identities=14%  Similarity=0.110  Sum_probs=179.5

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCC--cceeeEEec-------------CCCCCCCceEEEccCCCeEEEEe
Q 013578           93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASS--KSFKFLRIN-------------LPPGGPPTAVAFADNATSIVVAT  157 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~--~~~~~~~~~-------------~~~~~~v~~v~~~~~~~~l~~~~  157 (440)
                      .+..+.|+  |+.+++++.|+ | +||+.+++.  ..  +....             ..+...+.+++|+|+ +.++.+.
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~--l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~   99 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT--RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT   99 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTE-E-EEEC-------CE--EEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE
T ss_pred             cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE--eechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE
Confidence            35667888  66777888888 8 999988764  21  11110             001256999999999 7666664


Q ss_pred             ecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC
Q 013578          158 HNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK  237 (440)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~  237 (440)
                      .    ..+++|+........                        ............++|||+ .++.+ .++.|++||+.
T Consensus       100 ~----~~i~~~d~~~~~~~~------------------------l~~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~~~  149 (706)
T 2z3z_A          100 Q----GGLVGFDMLARKVTY------------------------LFDTNEETASLDFSPVGD-RVAYV-RNHNLYIARGG  149 (706)
T ss_dssp             T----TEEEEEETTTTEEEE------------------------EECCTTCCTTCEECTTSS-EEEEE-ETTEEEEEECB
T ss_pred             C----CEEEEEECCCCceEE------------------------ccCCcccccCCcCCCCCC-EEEEE-ECCeEEEEecC
Confidence            3    577777764431100                        000001123455689999 55554 67899999999


Q ss_pred             C-----CceeeeeeCCCCc--------------ccEEEecCCCCeEEEEe------------------------------
Q 013578          238 T-----GKLLGNVDTNQLK--------------NNMAAISPNGRFLAAAA------------------------------  268 (440)
Q Consensus       238 ~-----~~~~~~~~~~~~~--------------v~~~~~s~~~~~l~~~~------------------------------  268 (440)
                      +     ++.......+...              +.+++|+|||++|++++                              
T Consensus       150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g  229 (706)
T 2z3z_A          150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG  229 (706)
T ss_dssp             CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred             cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence            8     7766544433332              47899999999999987                              


Q ss_pred             ---cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC-----cEEEEecCccccccCCCCc
Q 013578          269 ---FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG-----TLRVWNINVRYHLDEDPKT  340 (440)
Q Consensus       269 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~  340 (440)
                         .+..|++||+..+.      ...+.....|...+.+++|+|||++|++++.|+     .|++||+.++.....    
T Consensus       230 ~~~~~~~l~~~d~~~~~------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~----  299 (706)
T 2z3z_A          230 TPSHHVTVGIYHLATGK------TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT----  299 (706)
T ss_dssp             SCCCEEEEEEEETTTTE------EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE----
T ss_pred             CCCCeeEEEEEECCCCc------eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE----
Confidence               34668899885432      011111224677899999999999999988776     899999987622110    


Q ss_pred             cccccccccCCCCCeeeeeeEEeCC--CCCEEEEec-CCEEEEEEcC-CccchhhhhccccCCeEE-EEecCCCCCCCCC
Q 013578          341 LKVLPIPLLDSNGATLQYDRLSLSS--DGKILAATH-GSTLQWLSVE-TGKVLDTAEKAHEGEITC-MAWAPKTIPMGNQ  415 (440)
Q Consensus       341 ~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~-~~~i~i~d~~-~~~~~~~~~~~h~~~v~~-v~~~~~~~~~~~~  415 (440)
                         +.  ..........+..++|+|  ||++++++. ++.+++|.+. +++.+..+ ..|...+.. ++|+|++      
T Consensus       300 ---~~--~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-~~~~~~v~~~~~~spdg------  367 (706)
T 2z3z_A          300 ---LF--VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-TKGEWEVTNFAGFDPKG------  367 (706)
T ss_dssp             ---EE--EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-CCSSSCEEEEEEECTTS------
T ss_pred             ---EE--EccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec-CCCCeEEEeeeEEcCCC------
Confidence               00  000001111235689999  999888875 6778888775 56666666 467777877 7999998      


Q ss_pred             cceEEEE-eeCCC----eEEEEeCCCCC
Q 013578          416 QVSVLAT-SSVDK----KVKLWLAPSLE  438 (440)
Q Consensus       416 ~~~~l~t-~~~Dg----~i~vw~~~~~~  438 (440)
                        +.|+. ++.++    .|..|++.+++
T Consensus       368 --~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          368 --TRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             --SEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             --CEEEEEecCCCCceEEEEEEEcCCCC
Confidence              55554 44444    67777776654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=7.1e-19  Score=156.40  Aligned_cols=288  Identities=12%  Similarity=0.132  Sum_probs=175.2

Q ss_pred             EEEEeeCC--CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc-cccccccccc
Q 013578          105 CLATACAD--GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE-KAISTNEGKQ  181 (440)
Q Consensus       105 ~l~t~s~d--g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  181 (440)
                      +|+.|+..  +.|.+|+++...................+..++|+|+++++++++.+    .+.+|+.. ......    
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~----~v~~~~~~~~g~~~~----   75 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK----KWSSFAVKSPTEIVH----   75 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT----EEEEEEEEETTEEEE----
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc----eEEEEEECCCCCEEE----
Confidence            35556543  56888877543322111111112233578899999999998887765    56666543 110000    


Q ss_pred             cCCCCCCceeecccccccceeEEEeecccccccCCCCCe-EEEEee-------------CCceEEEEeCC-CCceeeeee
Q 013578          182 QSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST-IIASCS-------------EGTDISIWHGK-TGKLLGNVD  246 (440)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~-------------~d~~i~vwd~~-~~~~~~~~~  246 (440)
                               ...         ......+..+.++|+|+. +++++.             .++.+.+|++. +++....+.
T Consensus        76 ---------~~~---------~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~  137 (365)
T 1jof_A           76 ---------EAS---------HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ  137 (365)
T ss_dssp             ---------EEE---------EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE
T ss_pred             ---------eeE---------eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe
Confidence                     000         000011334567889985 344553             68899999997 466544433


Q ss_pred             ----CCCCcccEEEecCCCCeEEEEec-CCCEEEEEeE-ecCCCceeeeeeeeeee--ccccceEEEEEcCCCCEEEEEe
Q 013578          247 ----TNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIV-YSKDGLVKAVTSVMQLK--GHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       247 ----~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~-~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                          .+...+.+++|+|+|++|++++. ++.|++||+. .++   ..   .+..+.  .|...+..++|+|+|++|++++
T Consensus       138 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~---~~---~~~~~~~~~~g~~p~~~~~spdg~~l~v~~  211 (365)
T 1jof_A          138 NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE---VE---LVGSVDAPDPGDHPRWVAMHPTGNYLYALM  211 (365)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC---EE---EEEEEECSSTTCCEEEEEECTTSSEEEEEE
T ss_pred             eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC---EE---EeeeEecCCCCCCCCEeEECCCCCEEEEEE
Confidence                23456889999999999888764 6789999986 332   11   122232  2456789999999999988777


Q ss_pred             C-CCcEEEEecCc--cccccCCCCccccccccccCCCCCee------eeeeEE-eCCCCCEEEEec--CC-----EEEEE
Q 013578          319 K-DGTLRVWNINV--RYHLDEDPKTLKVLPIPLLDSNGATL------QYDRLS-LSSDGKILAATH--GS-----TLQWL  381 (440)
Q Consensus       319 ~-dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~-~s~~g~~l~~~~--~~-----~i~i~  381 (440)
                      . ++.|.+|++..  +..... ......+  +. ...++..      .+..++ |+|||++|+++.  ++     .|.+|
T Consensus       212 ~~~~~v~v~~~~~~~g~~~~~-~~~~~~~--~~-~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~  287 (365)
T 1jof_A          212 EAGNRICEYVIDPATHMPVYT-HHSFPLI--PP-GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGF  287 (365)
T ss_dssp             TTTTEEEEEEECTTTCCEEEE-EEEEESS--CT-TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEE
T ss_pred             CCCCeEEEEEEeCCCCcEEEc-cceEEcC--CC-CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEE
Confidence            5 78999998752  211000 0000000  00 0011111      467899 999999887653  23     89999


Q ss_pred             EcC-Cccchhh--hhccccCCeEEEEecC---CCCCCCCCcceEEEEeeC-CCeEEEEeCCC
Q 013578          382 SVE-TGKVLDT--AEKAHEGEITCMAWAP---KTIPMGNQQVSVLATSSV-DKKVKLWLAPS  436 (440)
Q Consensus       382 d~~-~~~~~~~--~~~~h~~~v~~v~~~~---~~~~~~~~~~~~l~t~~~-Dg~i~vw~~~~  436 (440)
                      ++. +++....  ....+...+..++|+|   ++        ++|++++. ++.|++|+++.
T Consensus       288 ~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg--------~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          288 KLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD--------EWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT--------TEEEEECSSSCEEEEEEEET
T ss_pred             EECCCCCEEEeeeeeecCCCCcccceecCCCcCC--------CEEEEEEcCCCeEEEEEEch
Confidence            996 5664321  1123455677899999   77        78888876 48999998864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=1.1e-18  Score=155.11  Aligned_cols=288  Identities=12%  Similarity=0.123  Sum_probs=170.9

Q ss_pred             CCEEEEee----CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC-CcceEEeecccc--ccc
Q 013578          103 GKCLATAC----ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL-SGCSLYMYGEEK--AIS  175 (440)
Q Consensus       103 g~~l~t~s----~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~-~~~~~~~~~~~~--~~~  175 (440)
                      ..+++.|+    .++.|.+|+++........... .  +...+..++|+|++++|++++.+. ....+.+|....  ...
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~-~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~   89 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSD-A--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL   89 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEE-E--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeec-c--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence            34555553    4678999988654333222222 2  557788999999999999888752 123444443322  100


Q ss_pred             cccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee----e--C--
Q 013578          176 TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV----D--T--  247 (440)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~--~--  247 (440)
                      ..              .......       ...+....+  +++.++++...++.|.+|++.....+..+    .  .  
T Consensus        90 ~~--------------~~~~~~~-------~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~  146 (361)
T 3scy_A           90 HL--------------LNTQKTM-------GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG  146 (361)
T ss_dssp             EE--------------EEEEECS-------SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred             EE--------------eeEeccC-------CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence            00              0000000       001111122  67755555567899999999754333221    1  1  


Q ss_pred             ------CCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCC----Cceeee-eeeeeeeccccceEEEEEcCCCCEEE
Q 013578          248 ------NQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKD----GLVKAV-TSVMQLKGHKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       248 ------~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~----~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~  315 (440)
                            +...+.+++|+|+|++|++++. ++.|.+|++.....    ...... ........+...+.+++|+|+|++++
T Consensus       147 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  226 (361)
T 3scy_A          147 PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAY  226 (361)
T ss_dssp             SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEE
Confidence                  1122467999999997776654 78999999865431    000000 00111222345678999999999887


Q ss_pred             EEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec---CCEEEEEEcC--Ccc--
Q 013578          316 TAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH---GSTLQWLSVE--TGK--  387 (440)
Q Consensus       316 s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~~~i~i~d~~--~~~--  387 (440)
                      +++ .++.|.+||+.++...     ....    ......+......++|+|||++|+++.   ++.|.+|++.  +++  
T Consensus       227 v~~~~~~~v~v~~~~~g~~~-----~~~~----~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~  297 (361)
T 3scy_A          227 LINEIGGTVIAFRYADGMLD-----EIQT----VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT  297 (361)
T ss_dssp             EEETTTCEEEEEEEETTEEE-----EEEE----EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE
T ss_pred             EEcCCCCeEEEEEecCCceE-----EeEE----EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE
Confidence            777 6899999999854221     0000    011111122346899999999886643   4789999985  454  


Q ss_pred             chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee-CCCeEEEEeCC
Q 013578          388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS-VDKKVKLWLAP  435 (440)
Q Consensus       388 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~i~vw~~~  435 (440)
                      .+..+. . ...+.+++|+|++        ++|++++ .++.|.+|+++
T Consensus       298 ~~~~~~-~-g~~~~~~~~spdg--------~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          298 KVGYQL-T-GIHPRNFIITPNG--------KYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             EEEEEE-C-SSCCCEEEECTTS--------CEEEEEETTTTEEEEEEEC
T ss_pred             EeeEec-C-CCCCceEEECCCC--------CEEEEEECCCCCEEEEEEE
Confidence            333332 2 4578899999998        7777776 67999997554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=2.7e-20  Score=180.98  Aligned_cols=289  Identities=13%  Similarity=0.068  Sum_probs=177.2

Q ss_pred             eEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC---CCCceEEEccCCCeEEEEeecC------CcceE
Q 013578           95 TGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG---GPPTAVAFADNATSIVVATHNL------SGCSL  165 (440)
Q Consensus        95 ~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~---~~v~~v~~~~~~~~l~~~~~~~------~~~~~  165 (440)
                      ..++|+|||++++++ .|++|++||+.+++..     .....+.   ..+.+++|+|||++|++++...      ....+
T Consensus        19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i   92 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSY-----TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY   92 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTSCEEEEESSSCCEE-----EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             CccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-----EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEE
Confidence            378999999766554 6999999999887532     2221221   2489999999999999887632      12567


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV  245 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  245 (440)
                      ++|+.........    ..+.                    .......++|||+ .|+.+. ++.|++|++.+++.....
T Consensus        93 ~~~d~~~g~~~~~----~~l~--------------------~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~  146 (719)
T 1z68_A           93 YIYDLSNGEFVRG----NELP--------------------RPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQIT  146 (719)
T ss_dssp             EEEETTTTEECCS----SCCC--------------------SSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred             EEEECCCCccccc----eecC--------------------cccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEe
Confidence            7887654421000    0000                    1123355699999 555554 678999999888765433


Q ss_pred             e-CCCC-----------------cccEEEecCCCCeEEEEecCC----------------------------------CE
Q 013578          246 D-TNQL-----------------KNNMAAISPNGRFLAAAAFTA----------------------------------DV  273 (440)
Q Consensus       246 ~-~~~~-----------------~v~~~~~s~~~~~l~~~~~dg----------------------------------~i  273 (440)
                      . ++..                 ...+++|+|||++|++++.|.                                  .|
T Consensus       147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l  226 (719)
T 1z68_A          147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI  226 (719)
T ss_dssp             CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred             cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence            2 2111                 125899999999999988652                                  67


Q ss_pred             EEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC----cEEEEe----cCccccccCCCCcccccc
Q 013578          274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG----TLRVWN----INVRYHLDEDPKTLKVLP  345 (440)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg----~i~iwd----~~~~~~~~~~~~~~~~~~  345 (440)
                      ++||+..+.............+.+|...+.+++|+||++++++....+    .|.+||    +.++....       ...
T Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~-------~~~  299 (719)
T 1z68_A          227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK-------TQE  299 (719)
T ss_dssp             EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG-------GGE
T ss_pred             EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE-------EEe
Confidence            788875443100000000022446788899999999988777654322    488899    66553321       000


Q ss_pred             ccccCCCCCeeeee-----eEEeCCCCCEEEE--ec-CC--EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCC
Q 013578          346 IPLLDSNGATLQYD-----RLSLSSDGKILAA--TH-GS--TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQ  415 (440)
Q Consensus       346 ~~~~~~~~~~~~v~-----~~~~s~~g~~l~~--~~-~~--~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~  415 (440)
                         ....++...+.     .++|+|||+.++.  +. ++  .|++||+.+++. ..+ ..+...+..+.+. ++      
T Consensus       300 ---~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~l-t~~~~~v~~~~~~-d~------  367 (719)
T 1z68_A          300 ---HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQI-TSGKWEAINIFRV-TQ------  367 (719)
T ss_dssp             ---EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EEC-SCSSSCEEEEEEE-CS------
T ss_pred             ---cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eec-ccCceEEEEEEEE-eC------
Confidence               00011222233     6899999996554  32 33  688888877763 344 2455568777777 65      


Q ss_pred             cceEEEEeeC-----CCeEEEEeCCC
Q 013578          416 QVSVLATSSV-----DKKVKLWLAPS  436 (440)
Q Consensus       416 ~~~~l~t~~~-----Dg~i~vw~~~~  436 (440)
                        ..|+..+.     ++..++|.++.
T Consensus       368 --~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          368 --DSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             --SEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             --CEEEEEEecCCCCCceEEEEEEeC
Confidence              45554444     48899998753

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=8.1e-20  Score=164.23  Aligned_cols=292  Identities=14%  Similarity=0.129  Sum_probs=177.5

Q ss_pred             cccccccCcceeE-----EEEccCCCEEEEeeC-CCc--EEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEE
Q 013578           84 VNTLKGHGDSVTG-----LCFSSDGKCLATACA-DGV--IRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVV  155 (440)
Q Consensus        84 ~~~l~~H~~~V~~-----l~~s~dg~~l~t~s~-dg~--v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  155 (440)
                      +..+..|......     .+|||||++|+.++. +|.  |.+||+.+++     .......+...+..++|+|+++.|+.
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-----~~~lt~~~~~~~~~~~~spdg~~l~~   97 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-----ATQLTEGRGDNTFGGFLSPDDDALFY   97 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-----EEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-----eEEeeeCCCCCccceEEcCCCCEEEE
Confidence            4556666655555     899999999999887 774  7777777654     22333444455567899999999999


Q ss_pred             EeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE-----------
Q 013578          156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS-----------  224 (440)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-----------  224 (440)
                      +..+   ..+++|+........             .+...   ......     .....++++. +++.           
T Consensus        98 ~~~~---~~l~~~d~~~g~~~~-------------~~~~~---~~~~~~-----~~~~~~~dg~-~l~~~~~~~~~~~~~  152 (388)
T 3pe7_A           98 VKDG---RNLMRVDLATLEENV-------------VYQVP---AEWVGY-----GTWVANSDCT-KLVGIEIRREDWVPL  152 (388)
T ss_dssp             EETT---TEEEEEETTTCCEEE-------------EEECC---TTEEEE-----EEEEECTTSS-EEEEEEEEGGGCCCC
T ss_pred             EeCC---CeEEEEECCCCccee-------------eeech---hhcccc-----cceeECCCCC-eeccccccCcccccc
Confidence            8865   456666654431100             00000   000000     0012256776 4432           


Q ss_pred             -----------eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecCC------CEEEEEeEecCCCce
Q 013578          225 -----------CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTA------DVKVWEIVYSKDGLV  286 (440)
Q Consensus       225 -----------~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg------~i~i~d~~~~~~~~~  286 (440)
                                 ...+..|++||+.+++..... .+...+..++|+| +|+.|+....++      .|.++|+....    
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----  227 (388)
T 3pe7_A          153 TDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----  227 (388)
T ss_dssp             CSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----
T ss_pred             cccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----
Confidence                       234578999999988754433 4455678899999 999998877643      56666653322    


Q ss_pred             eeeeeeeeeeccc--cceEEEEEcCCCCEEEEEeC-CC----cEEEEecCccccccCCCCccccccccccCCCCCe-eee
Q 013578          287 KAVTSVMQLKGHK--SAVTWLCFAPNSEQIITASK-DG----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT-LQY  358 (440)
Q Consensus       287 ~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v  358 (440)
                           ...+..+.  ..+..++|+|||+.|+..+. ++    .|++||+.++...     .....+     ...+. ...
T Consensus       228 -----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-----~l~~~~-----~~~~~~~~~  292 (388)
T 3pe7_A          228 -----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR-----QLTSMP-----ACSHLMSNY  292 (388)
T ss_dssp             -----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE-----EEEEEC-----CEEEEEECT
T ss_pred             -----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE-----EEEcCC-----CceeeeecC
Confidence                 22333333  35788999999998765443 22    3999999876421     000000     00000 001


Q ss_pred             eeEEeCCCCCEEEEe----------cCCEEEEEEcCCccchhhhhccccC-----------CeEEEEecCCCCCCCCCcc
Q 013578          359 DRLSLSSDGKILAAT----------HGSTLQWLSVETGKVLDTAEKAHEG-----------EITCMAWAPKTIPMGNQQV  417 (440)
Q Consensus       359 ~~~~~s~~g~~l~~~----------~~~~i~i~d~~~~~~~~~~~~~h~~-----------~v~~v~~~~~~~~~~~~~~  417 (440)
                      ...+|+|||+.|+..          .+..|++||+.+++... + ..|..           .+.+++|+||+        
T Consensus       293 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l-~~~~~~~~~~~~~~~~~~~~~~~spDg--------  362 (388)
T 3pe7_A          293 DGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR-V-ARHDTSWKVFEGDRQVTHPHPSFTPDD--------  362 (388)
T ss_dssp             TSSEEEEEECCC------------CCCCEEEEEETTTTEEEE-E-EECCCCCCCBTTBSSTTCCCCEECTTS--------
T ss_pred             CCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEE-e-ccccCcccccccccccCCCCccCCCCC--------
Confidence            234799999988752          35689999999887543 3 23544           57889999998        


Q ss_pred             eEEEEee-CCCeEEEEeCC
Q 013578          418 SVLATSS-VDKKVKLWLAP  435 (440)
Q Consensus       418 ~~l~t~~-~Dg~i~vw~~~  435 (440)
                      +.|+..+ .+|...||.++
T Consensus       363 ~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          363 KQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             SEEEEEECTTSSCEEEEEE
T ss_pred             CEEEEEecCCCceeEEEEE
Confidence            5665544 57877777654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=2.2e-19  Score=174.68  Aligned_cols=266  Identities=14%  Similarity=0.070  Sum_probs=163.6

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC-----CCceEEEccCCCeEEEEeecCCcceE
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG-----PPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~-----~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      .....+++|+|||++|+++  ||+|++||+.++...     .....+..     ....++|+|||++++.++.+...   
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~---   85 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-----VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ---   85 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-----EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEEC---
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceE-----EEEechhhhhhcccccceEECCCCCEEEEEECCeee---
Confidence            3456789999999999986  999999999987632     22222221     22448889999988877654100   


Q ss_pred             EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578          166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV  245 (440)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  245 (440)
                                                |                               --+..+.+.+||+.+++.. .+
T Consensus        86 --------------------------~-------------------------------r~~~~~~~~~~d~~~~~~~-~l  107 (740)
T 4a5s_A           86 --------------------------W-------------------------------RHSYTASYDIYDLNKRQLI-TE  107 (740)
T ss_dssp             --------------------------S-------------------------------SSCEEEEEEEEETTTTEEC-CS
T ss_pred             --------------------------E-------------------------------EEccceEEEEEECCCCcEE-Ec
Confidence                                      0                               0011245889999988754 45


Q ss_pred             eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceee-eeeeeeeecccc---------ceEEEEEcCCCCEEE
Q 013578          246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKA-VTSVMQLKGHKS---------AVTWLCFAPNSEQII  315 (440)
Q Consensus       246 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~h~~---------~v~~~~~~p~~~~l~  315 (440)
                      ..+...+...+|||||+.||.+. ++.|++|++..+....... ......+.++..         ....+.|||||++|+
T Consensus       108 ~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la  186 (740)
T 4a5s_A          108 ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLA  186 (740)
T ss_dssp             SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEE
T ss_pred             ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEE
Confidence            55566789999999999999885 7899999986543100000 000011222221         223589999999999


Q ss_pred             EEeCCCc-EE-----------------------------------EEecCc---cccccCCCCccccccccccCCCCCee
Q 013578          316 TASKDGT-LR-----------------------------------VWNINV---RYHLDEDPKTLKVLPIPLLDSNGATL  356 (440)
Q Consensus       316 s~~~dg~-i~-----------------------------------iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (440)
                      ..+.|.+ ++                                   +||+.+   +...     ....+..+. ...++..
T Consensus       187 ~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~-----~~~~l~~~~-~~~~~~~  260 (740)
T 4a5s_A          187 YAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA-----TSIQITAPA-SMLIGDH  260 (740)
T ss_dssp             EEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC-----CEEEECCCH-HHHTSCE
T ss_pred             EEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc-----eEEEecCCc-cCCCCCe
Confidence            8864433 44                                   444443   2100     000000000 0002455


Q ss_pred             eeeeEEeCCCCCEEEEec-----CCEEEEEEcCCcc----chhh--h-hccccCCeE-----EEEecCCCCCCCCCcceE
Q 013578          357 QYDRLSLSSDGKILAATH-----GSTLQWLSVETGK----VLDT--A-EKAHEGEIT-----CMAWAPKTIPMGNQQVSV  419 (440)
Q Consensus       357 ~v~~~~~s~~g~~l~~~~-----~~~i~i~d~~~~~----~~~~--~-~~~h~~~v~-----~v~~~~~~~~~~~~~~~~  419 (440)
                      .+..++|+|||++++...     +..|++||+.+++    +...  + ...|.+.|.     .+.|+||+        +.
T Consensus       261 ~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG--------~~  332 (740)
T 4a5s_A          261 YLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG--------NS  332 (740)
T ss_dssp             EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS--------SE
T ss_pred             EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC--------CE
Confidence            688999999999766532     2479999999987    2221  1 134555554     78999998        66


Q ss_pred             EE-EeeC-C--CeEEEEeCCCCCC
Q 013578          420 LA-TSSV-D--KKVKLWLAPSLES  439 (440)
Q Consensus       420 l~-t~~~-D--g~i~vw~~~~~~~  439 (440)
                      |+ ..+. +  ..|.+|++.++++
T Consensus       333 l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          333 FYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             EEEEEECTTSCEEEEEEETTCSSC
T ss_pred             EEEEEEcCCCceEEEEEECCCCce
Confidence            65 5554 3  4578888876653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=4.9e-19  Score=155.78  Aligned_cols=245  Identities=12%  Similarity=0.131  Sum_probs=162.8

Q ss_pred             ceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecCCC----CCCCceEEEccCCCeEEEEeecC-------
Q 013578           93 SVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPP----GGPPTAVAFADNATSIVVATHNL-------  160 (440)
Q Consensus        93 ~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~~~~-------  160 (440)
                      .+.+++|+|||+++ ++++.++.|.+||+.+++..    ......+    ...+..++|+|++++++++....       
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL----GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE----EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE----eeEEcCCcccccccccceEECCCCCEEEEEecccccccccc
Confidence            58899999999766 45566889999999876522    1111121    22688999999999988885210       


Q ss_pred             --CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC
Q 013578          161 --SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT  238 (440)
Q Consensus       161 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~  238 (440)
                        ....+.+|+......                        ...+.....+..+.++|+++ +++++  ++.|++||+.+
T Consensus       111 ~~~~~~i~v~d~~~~~~------------------------~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~  163 (337)
T 1pby_B          111 EVQPTRVALYDAETLSR------------------------RKAFEAPRQITMLAWARDGS-KLYGL--GRDLHVMDPEA  163 (337)
T ss_dssp             EECCCEEEEEETTTTEE------------------------EEEEECCSSCCCEEECTTSS-CEEEE--SSSEEEEETTT
T ss_pred             cccCceEEEEECCCCcE------------------------EEEEeCCCCcceeEECCCCC-EEEEe--CCeEEEEECCC
Confidence              124566665543211                        01111111233445688998 44444  57799999999


Q ss_pred             CceeeeeeCCCCcccEEEecCCCCeEEEEecCC------------------------CEEEEEeEecCCCceeeeeeeee
Q 013578          239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA------------------------DVKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       239 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------------------------~i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      ++.+..+..+.. ...+.|+|+++.+++.+.++                        .|.+||+..++   .    ....
T Consensus       164 ~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---~----~~~~  235 (337)
T 1pby_B          164 GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE---M----AMRE  235 (337)
T ss_dssp             TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC---E----EEEE
T ss_pred             CcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC---c----eEee
Confidence            988877765431 12337899998776665443                        35677765433   1    1233


Q ss_pred             eeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578          295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH  374 (440)
Q Consensus       295 ~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  374 (440)
                      +..+...+.+++|+|++++|+++  ++.|.+||+.+++....       +..        ...+..++|+|+|++|+++.
T Consensus       236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~-------~~~--------~~~~~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR-------VPL--------PHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE-------EEC--------SSCCCEEEECTTSCEEEEES
T ss_pred             cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce-------ecC--------CCceeeEEECCCCCEEEEEc
Confidence            44566778899999999999888  68999999986543211       110        12356799999999777654


Q ss_pred             -CCEEEEEEcCCccchhhhh
Q 013578          375 -GSTLQWLSVETGKVLDTAE  393 (440)
Q Consensus       375 -~~~i~i~d~~~~~~~~~~~  393 (440)
                       ++.|++||+.+++.+..+.
T Consensus       299 ~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          299 ALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             BSSEEEEEETTTCCEEEEEE
T ss_pred             CCCcEEEEECcCCcEEEEEE
Confidence             8999999999998877763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=2.1e-17  Score=141.81  Aligned_cols=247  Identities=15%  Similarity=0.219  Sum_probs=164.1

Q ss_pred             cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec---CCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578           88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN---LPPGGPPTAVAFADNATSIVVATHNLSGCS  164 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~  164 (440)
                      .+|-..+.+++++++|+++++...++.|.+||.....   .......   ..+...+..+++.                 
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~---~~~~~~~~~~~~~~~~p~~i~~~-----------------   85 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF---KFQFGECGKRDSQLLYPNRVAVV-----------------   85 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE---EEEECCBSSSTTCBSSEEEEEEE-----------------
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE---EEEecccCCCcccccCceEEEEE-----------------
Confidence            4567789999999999999988889999999976321   0011000   0011223334432                 


Q ss_pred             EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-CCceEEEEeCCCCceee
Q 013578          165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-EGTDISIWHGKTGKLLG  243 (440)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~  243 (440)
                                                                        .+++. ++++.. .++.|++|| .+++.+.
T Consensus        86 --------------------------------------------------~~~g~-l~v~~~~~~~~i~~~d-~~g~~~~  113 (286)
T 1q7f_A           86 --------------------------------------------------RNSGD-IIVTERSPTHQIQIYN-QYGQFVR  113 (286)
T ss_dssp             --------------------------------------------------TTTTE-EEEEECGGGCEEEEEC-TTSCEEE
T ss_pred             --------------------------------------------------cCCCe-EEEEcCCCCCEEEEEC-CCCcEEE
Confidence                                                              12222 344442 267799999 5677666


Q ss_pred             eeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee--ccccceEEEEEcCCCCEEEEEeCC
Q 013578          244 NVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK--GHKSAVTWLCFAPNSEQIITASKD  320 (440)
Q Consensus       244 ~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~d  320 (440)
                      .+.. +...+..++++++|+++++...++.|.+||.. +.        ....+.  ++...+.+++++|+|+++++...+
T Consensus       114 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~--------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  184 (286)
T 1q7f_A          114 KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN--------VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  184 (286)
T ss_dssp             EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--------EEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             EecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC--------EEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence            6643 23457889999999988777778899999852 11        122222  344568999999999988888889


Q ss_pred             CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC-EEEEEEcCCccchhhhhcccc-
Q 013578          321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS-TLQWLSVETGKVLDTAEKAHE-  397 (440)
Q Consensus       321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~-~i~i~d~~~~~~~~~~~~~h~-  397 (440)
                      +.|++||..... +       ..+     ...++......++++++|+++++.. ++ .|.+|+. +++.+..+. .+. 
T Consensus       185 ~~i~~~~~~g~~-~-------~~~-----~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~-~~~~  249 (286)
T 1q7f_A          185 HCVKVFNYEGQY-L-------RQI-----GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE-SKVK  249 (286)
T ss_dssp             TEEEEEETTCCE-E-------EEE-----SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE-ESSC
T ss_pred             CEEEEEcCCCCE-E-------EEE-----ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc-ccCC
Confidence            999999975321 1       111     1111123466899999999888765 54 9999995 466555553 333 


Q ss_pred             -CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          398 -GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       398 -~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                       ..+.+++++|++        +++++ +.|++|++|++....+
T Consensus       250 ~~~~~~i~~~~~g--------~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          250 HAQCFDVALMDDG--------SVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             CSCEEEEEEETTT--------EEEEE-ETTTEEEEEECSCCCC
T ss_pred             CCcceeEEECCCC--------cEEEE-CCCCeEEEEEcccccc
Confidence             347899999998        77777 6799999999976543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=8.4e-19  Score=170.52  Aligned_cols=307  Identities=7%  Similarity=-0.013  Sum_probs=184.5

Q ss_pred             CCCcccCcc----ccccccccCc---ceeEEEEccCCCEEEEeeC---------CCcEEEEecCCCCCcceeeEEecCCC
Q 013578           74 DQNKRHHPL----DVNTLKGHGD---SVTGLCFSSDGKCLATACA---------DGVIRVHKLDDASSKSFKFLRINLPP  137 (440)
Q Consensus        74 ~~~~~~~~~----~~~~l~~H~~---~V~~l~~s~dg~~l~t~s~---------dg~v~vW~~~~~~~~~~~~~~~~~~~  137 (440)
                      ++++..|+.    ....+.+|..   .|.+++|||||++|++++.         |+.|++||+.+++....      ...
T Consensus        35 d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~------~~l  108 (719)
T 1z68_A           35 DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG------NEL  108 (719)
T ss_dssp             TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS------SCC
T ss_pred             CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc------eec
Confidence            555665543    2333444443   4999999999999999876         78999999987653100      011


Q ss_pred             CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEe----------e
Q 013578          138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTL----------F  207 (440)
Q Consensus       138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~  207 (440)
                      ...+..++|+|||+.|+.+..    ..+++|+........-..               ..+...+....          .
T Consensus       109 ~~~~~~~~~SPDG~~la~~~~----~~i~~~~~~~g~~~~l~~---------------~~~~~~v~~g~~~~v~~ee~~~  169 (719)
T 1z68_A          109 PRPIQYLCWSPVGSKLAYVYQ----NNIYLKQRPGDPPFQITF---------------NGRENKIFNGIPDWVYEEEMLA  169 (719)
T ss_dssp             CSSBCCEEECSSTTCEEEEET----TEEEEESSTTSCCEECCC---------------CCBTTTEEESSCCHHHHHHTTC
T ss_pred             CcccccceECCCCCEEEEEEC----CeEEEEeCCCCCcEEEec---------------CCCcCCeEcccccceeeeeccc
Confidence            256889999999999998853    378888765432110000               00000000000          0


Q ss_pred             cccccccCCCCCeEEEEeeCCc----------------------------------eEEEEeCCCCcee--------eee
Q 013578          208 GASATYGTADGSTIIASCSEGT----------------------------------DISIWHGKTGKLL--------GNV  245 (440)
Q Consensus       208 ~~~~~~~~~~~~~~l~s~~~d~----------------------------------~i~vwd~~~~~~~--------~~~  245 (440)
                      ......++|||+ .|+.++.|.                                  .|++||+.+++..        ..+
T Consensus       170 ~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  248 (719)
T 1z68_A          170 TKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI  248 (719)
T ss_dssp             SSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred             CcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence            012456799999 666555431                                  7889999887643        122


Q ss_pred             eCCCCcccEEEecCCCCeEEEEecCC----CEEEEE----eEecCCCceeeeeeeeee----eccccceE-----EEEEc
Q 013578          246 DTNQLKNNMAAISPNGRFLAAAAFTA----DVKVWE----IVYSKDGLVKAVTSVMQL----KGHKSAVT-----WLCFA  308 (440)
Q Consensus       246 ~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d----~~~~~~~~~~~~~~~~~~----~~h~~~v~-----~~~~~  308 (440)
                      ..+...+..++|+||++++++....+    .|.+||    +..++        ....+    .+|...+.     .+.|+
T Consensus       249 ~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (719)
T 1z68_A          249 ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD--------CPKTQEHIEESRTGWAGGFFVSTPVFS  320 (719)
T ss_dssp             HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE--------CCGGGEEEEECSSSCSSSSSCCCCEEC
T ss_pred             CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc--------eEEEEecccccCCceEccccCCccEEC
Confidence            34667789999999988777754332    377777    43332        22222    35677776     88999


Q ss_pred             CCCCEEEE--EeCCC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecC-----CEE
Q 013578          309 PNSEQIIT--ASKDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THG-----STL  378 (440)
Q Consensus       309 p~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~-----~~i  378 (440)
                      |||+.|+.  ...+|  .|.+||+.++..        ..+       ..+...+..+.++ +++.|+. +.+     +..
T Consensus       321 pdg~~l~~~~~~~~g~~~l~~~~~~~~~~--------~~l-------t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~  384 (719)
T 1z68_A          321 YDAISYYKIFSDKDGYKHIHYIKDTVENA--------IQI-------TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRR  384 (719)
T ss_dssp             TTSSCEEEEEECTTSCEEEEEESSCSTTC--------EEC-------SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred             CCCCeEEEEEEccCCceEEEEEECCCCce--------Eec-------ccCceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence            99996654  44555  466667654321        111       1112235556666 7776654 434     667


Q ss_pred             EEEEcCC--ccc-hhhh---hccccCCeEEEEecCCCCCCCCCcceEEE-EeeCC--CeEEEEeCCCCC
Q 013578          379 QWLSVET--GKV-LDTA---EKAHEGEITCMAWAPKTIPMGNQQVSVLA-TSSVD--KKVKLWLAPSLE  438 (440)
Q Consensus       379 ~i~d~~~--~~~-~~~~---~~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~~D--g~i~vw~~~~~~  438 (440)
                      ++|.+..  +.. ...+   ..+|...+..+.|+|++        ++++ +++.+  ..+.+|++.+++
T Consensus       385 ~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg--------~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          385 NIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYA--------KYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             EEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGG--------SSEEEEECCBSSCEEEEECSSSCC
T ss_pred             EEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCC--------CEEEEEcCCCCCCeEEEEECCCCC
Confidence            7777643  421 1222   12366778899999987        4444 44443  568899887765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.81  E-value=2.4e-17  Score=145.66  Aligned_cols=220  Identities=12%  Similarity=0.158  Sum_probs=136.7

Q ss_pred             ccccccCcceeEEEEccCCCEEEEee-CCCcEEEEecCCCCCcceeeEEecCC--------CCCCCceEEEccCCCeEEE
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATAC-ADGVIRVHKLDDASSKSFKFLRINLP--------PGGPPTAVAFADNATSIVV  155 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s-~dg~v~vW~~~~~~~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~l~~  155 (440)
                      ..+..|...+..++|+|||++|++++ .++.|++|++...... .........        ....+.+++|+        
T Consensus        79 ~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~s--------  149 (347)
T 3hfq_A           79 NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL-TLTDTVQHSGHGPRPEQDGSHIHYTDLT--------  149 (347)
T ss_dssp             EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE-EEEEEEECCCCCSSTTCSSCCEEEEEEC--------
T ss_pred             eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe-eecceeecCCCCCCccccCCCceEEEEC--------
Confidence            34455788899999999999998888 7899999999643211 111111110        01123344444        


Q ss_pred             EeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEe
Q 013578          156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWH  235 (440)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd  235 (440)
                                                                                  |+|+ ++++...++.|++|+
T Consensus       150 ------------------------------------------------------------pdg~-l~v~~~~~~~v~~~~  168 (347)
T 3hfq_A          150 ------------------------------------------------------------PDNR-LAVIDLGSDKVYVYN  168 (347)
T ss_dssp             ------------------------------------------------------------TTSC-EEEEETTTTEEEEEE
T ss_pred             ------------------------------------------------------------CCCc-EEEEeCCCCEEEEEE
Confidence                                                                        4444 555666677899999


Q ss_pred             CC-CCceee--eeeC-CCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeeccc------cceEE
Q 013578          236 GK-TGKLLG--NVDT-NQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK------SAVTW  304 (440)
Q Consensus       236 ~~-~~~~~~--~~~~-~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~------~~v~~  304 (440)
                      +. +++...  .+.. ....+..++|+|+|++++++ ..++.|.+|++.... +..   .....+....      ..+..
T Consensus       169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~---~~~~~~~~~~~~~~~~~~~~~  244 (347)
T 3hfq_A          169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT-GAF---TQLGIVKTIPADYTAHNGAAA  244 (347)
T ss_dssp             ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEE---EEEEEEESSCTTCCSCCEEEE
T ss_pred             ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC-Cce---EEeeeeeecCCCCCCCCccee
Confidence            88 454322  2222 22356789999999976665 567899999987422 111   1122222222      45889


Q ss_pred             EEEcCCCCEE-EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEE
Q 013578          305 LCFAPNSEQI-ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWL  381 (440)
Q Consensus       305 ~~~~p~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~  381 (440)
                      ++|+|+|++| ++...++.|.+|++.....+    .....+       ..+...+..++|+|||++|+++.  ++.+.+|
T Consensus       245 i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~----~~~~~~-------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          245 IRLSHDGHFLYVSNRGYNTLAVFAVTADGHL----TLIQQI-------STEGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             EEECTTSCEEEEEEETTTEEEEEEECGGGCE----EEEEEE-------ECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEECCCCcE----EEeEEE-------ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            9999999987 45566899999999732110    001100       11112356899999999887764  5899999


Q ss_pred             --EcCCccch
Q 013578          382 --SVETGKVL  389 (440)
Q Consensus       382 --d~~~~~~~  389 (440)
                        |..+|++.
T Consensus       314 ~~d~~tg~l~  323 (347)
T 3hfq_A          314 ARDLTSGKLS  323 (347)
T ss_dssp             EECTTTCCEE
T ss_pred             EEeCCCCeEE
Confidence              55566654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=3e-17  Score=143.55  Aligned_cols=193  Identities=12%  Similarity=0.133  Sum_probs=132.9

Q ss_pred             cCCCCCeEEEEeeCCceEEEEeCCCCc-eeeeee---------CCCCcccEEEecC-CCCeEEEEe-cCCCEEEEEeEec
Q 013578          214 GTADGSTIIASCSEGTDISIWHGKTGK-LLGNVD---------TNQLKNNMAAISP-NGRFLAAAA-FTADVKVWEIVYS  281 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~---------~~~~~v~~~~~s~-~~~~l~~~~-~dg~i~i~d~~~~  281 (440)
                      +.++|+ ++++...++.|++||..... .+..+.         .+......++++| +++++++.+ .++.|++|+.. +
T Consensus        98 ~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g  175 (329)
T 3fvz_A           98 IDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-G  175 (329)
T ss_dssp             ECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-S
T ss_pred             ECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-C
Confidence            356666 67777778889999975432 444442         2233577899999 788777775 68999999832 2


Q ss_pred             CCCceeeeeeeeeee----------ccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccC
Q 013578          282 KDGLVKAVTSVMQLK----------GHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLD  350 (440)
Q Consensus       282 ~~~~~~~~~~~~~~~----------~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  350 (440)
                      .        .+..+.          ++.....+++++|+ +.++++...++.|++||..++..+..       +.     
T Consensus       176 ~--------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~-------~~-----  235 (329)
T 3fvz_A          176 K--------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE-------IK-----  235 (329)
T ss_dssp             C--------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-------EC-----
T ss_pred             C--------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE-------Ee-----
Confidence            1        222221          22344889999998 77777777899999999985543321       11     


Q ss_pred             CCCCeeeeeeEEeCCCCCEEEEe--------cCCEEEEEEcCCccchhhhh--ccccCCeEEEEecCCCCCCCCCcceEE
Q 013578          351 SNGATLQYDRLSLSSDGKILAAT--------HGSTLQWLSVETGKVLDTAE--KAHEGEITCMAWAPKTIPMGNQQVSVL  420 (440)
Q Consensus       351 ~~~~~~~v~~~~~s~~g~~l~~~--------~~~~i~i~d~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~~~~~~~l  420 (440)
                      .......+..++++| +..++..        .+..|++|+..+++.+..+.  .++...+.+|+++|++        .++
T Consensus       236 ~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG--------~ly  306 (329)
T 3fvz_A          236 HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG--------TVY  306 (329)
T ss_dssp             CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS--------EEE
T ss_pred             ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC--------CEE
Confidence            111222355788888 4333331        13589999999999887762  2566789999999998        899


Q ss_pred             EEeeCCCeEEEEeCCCC
Q 013578          421 ATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       421 ~t~~~Dg~i~vw~~~~~  437 (440)
                      ++...+++|++|++...
T Consensus       307 vad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          307 IGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEESSSCCEEEEEEEEC
T ss_pred             EEECCCCEEEEEeCCcc
Confidence            99999999999998643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=5.4e-17  Score=156.29  Aligned_cols=306  Identities=12%  Similarity=0.041  Sum_probs=183.6

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEe--eCCCcEEEEecCCCCCcceeeEEecCCCCCCCc---------eEEEc--cC
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATA--CADGVIRVHKLDDASSKSFKFLRINLPPGGPPT---------AVAFA--DN  149 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~--s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~---------~v~~~--~~  149 (440)
                      ....+.+|...|..++|++++-++++.  +.++...||....+..     ......+...+.         ...|+  ||
T Consensus        15 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD   89 (662)
T 3azo_A           15 DAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-----EESALPAPWNVRNRVFEYSGFPWAGVPRPA   89 (662)
T ss_dssp             CHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-----EEESSCTTCCBCCCGGGTCCCCEEEECCSS
T ss_pred             CHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-----cceeCCCCccccccccccCCccceeeeecC
Confidence            356688999999999999887777777  6688999999743321     222333434444         56666  99


Q ss_pred             CCe-EEEEeecCCcceEEeeccc----cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578          150 ATS-IVVATHNLSGCSLYMYGEE----KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS  224 (440)
Q Consensus       150 ~~~-l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  224 (440)
                      ++. |+.+...  ...|++++..    ........     ..        ...+..       ......++|||+ .|+.
T Consensus        90 g~~~la~~~~~--~~~l~~~~~~~~g~~~~~~l~~-----~~--------~~~~~~-------~~~~~~~spDg~-~l~~  146 (662)
T 3azo_A           90 GGPLLVFTHFG--DQRLYAFEPDAPGGAVPRPLTP-----VS--------AVGGGL-------RWADPVLLPERG-EVWC  146 (662)
T ss_dssp             SSCEEEEEBTT--TCCEEEECTTSTTCCCCEECSC-----CC--------CSTTCE-------EEEEEEEETTTT-EEEE
T ss_pred             CCeEEEEEECC--CCeEEEEcCCCCCCCCCEeccC-----Cc--------cCCCCc-------cccCcEECCCCC-EEEE
Confidence            999 7766543  3556766644    11100000     00        000000       112234589999 5665


Q ss_pred             eeCC----------ceEEEEeCCC------Cceeeeee-CCCCcccEEEecCCCCeEEEEecCC--------CEEEEEeE
Q 013578          225 CSEG----------TDISIWHGKT------GKLLGNVD-TNQLKNNMAAISPNGRFLAAAAFTA--------DVKVWEIV  279 (440)
Q Consensus       225 ~~~d----------~~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~i~d~~  279 (440)
                      ++.+          ..|++||+.+      ++. ..+. .+...+..++|+|||++|+.++.++        .|++||+.
T Consensus       147 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~  225 (662)
T 3azo_A          147 MAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT  225 (662)
T ss_dssp             EEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred             EEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence            5555          5799999987      544 3444 4455677889999999999887553        68999986


Q ss_pred             -ecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC--cEEEEecCccccccCCCCccccccccccCCCCCee
Q 013578          280 -YSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL  356 (440)
Q Consensus       280 -~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (440)
                       .+.   ...  ......+|...+..+.|+|||+++++++.++  .|.+||+.++........... ...+     .-..
T Consensus       226 ~~g~---~~~--~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~p-----~w~~  294 (662)
T 3azo_A          226 EDGR---FAD--TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE-FAGP-----LWTP  294 (662)
T ss_dssp             TTSC---EEE--EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB-SSCC-----CCST
T ss_pred             CCCc---ccc--cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc-ccCc-----cccc
Confidence             231   001  2222334568899999999999888888888  555566544322110000000 0000     0001


Q ss_pred             eeeeEEeCCCCCEEEEecCCEEEEE--EcCCccchhhhhccccCCeEEE-EecCCCCCCCCCcceEEEEeeCCCe--EEE
Q 013578          357 QYDRLSLSSDGKILAATHGSTLQWL--SVETGKVLDTAEKAHEGEITCM-AWAPKTIPMGNQQVSVLATSSVDKK--VKL  431 (440)
Q Consensus       357 ~v~~~~~s~~g~~l~~~~~~~i~i~--d~~~~~~~~~~~~~h~~~v~~v-~~~~~~~~~~~~~~~~l~t~~~Dg~--i~v  431 (440)
                      .+..++|+|++++++++..+.+++|  |..+++ +..+ ..|.+.+..+ +++++.        -++++++.+..  |.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~s~~~~~--------~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          295 GMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDA-AGPWTEWAATLTVSGTR--------AVGVAASPRTAYEVVE  364 (662)
T ss_dssp             TCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEEC-CSSCCEEEEEEEEETTE--------EEEEEEETTEEEEEEE
T ss_pred             cCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEe-cCCCCeEEEEEecCCCE--------EEEEEcCCCCCCEEEE
Confidence            1456899999998888654767777  666665 4445 4577778777 665543        34455555554  455


Q ss_pred             EeCCCCC
Q 013578          432 WLAPSLE  438 (440)
Q Consensus       432 w~~~~~~  438 (440)
                      |++.+++
T Consensus       365 ~d~~~g~  371 (662)
T 3azo_A          365 LDTVTGR  371 (662)
T ss_dssp             EETTTCC
T ss_pred             EECCCCc
Confidence            5655554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.78  E-value=4.3e-18  Score=161.26  Aligned_cols=231  Identities=10%  Similarity=0.037  Sum_probs=150.6

Q ss_pred             CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      .+|.+++|+|||+.|++++....  .+.+|........    .   +          ..+..      .......++|| 
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g--~~~lw~~~~g~~~----~---l----------t~~~~------~~~~~~~~spd-   75 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEG--SVNAYLYDGGETV----K---L----------NREPI------NSVLDPHYGVG-   75 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETT--EEEEEEEETTEEE----E---C----------CSSCC------SEECEECTTCS-
T ss_pred             cchheeecCCCCCeEEEEEccCC--ceeEEEEcCCCcE----e---e----------ecccc------cccccccCCCC-
Confidence            57899999999999999887432  3444442211100    0   0          00000      01122344677 


Q ss_pred             CeEEEEeeC---CceEEEEeCCC---CceeeeeeCCCCcccEEEecCCCCe-EEEEecCCCEEEEEeEecCCCceeeeee
Q 013578          219 STIIASCSE---GTDISIWHGKT---GKLLGNVDTNQLKNNMAAISPNGRF-LAAAAFTADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       219 ~~~l~s~~~---d~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                      + ++++++.   +...++|.+..   +... .+... ......+|+|+|+. +++...++.+.+||+..++         
T Consensus        76 ~-~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~---------  143 (582)
T 3o4h_A           76 R-VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG---------  143 (582)
T ss_dssp             E-EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE---------
T ss_pred             e-EEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc---------
Confidence            4 7776664   44455544332   3222 33222 23446788888864 3344455666799986553         


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEEEeCC----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIITASKD----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  367 (440)
                      ...+..+..  .+++|+|||++|++++.|    +.|++||+.++...               ....+...+..++|||||
T Consensus       144 ~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~---------------~l~~~~~~~~~~~~SpDG  206 (582)
T 3o4h_A          144 LRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR---------------VFDSGEGSFSSASISPGM  206 (582)
T ss_dssp             EEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE---------------EECCSSCEEEEEEECTTS
T ss_pred             EEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce---------------EeecCCCccccceECCCC
Confidence            222222333  789999999999988877    78999998865321               011334456889999999


Q ss_pred             CEEEEec-CC--EEEEEEcCCccchhhhhccccCCeEEEE--------ecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          368 KILAATH-GS--TLQWLSVETGKVLDTAEKAHEGEITCMA--------WAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       368 ~~l~~~~-~~--~i~i~d~~~~~~~~~~~~~h~~~v~~v~--------~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ++|+++. ++  .|++||+.+++.. .+ .+|...+..++        |+||+        .++++++.||++++|++
T Consensus       207 ~~l~~~~~~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~spdg--------~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          207 KVTAGLETAREARLVTVDPRDGSVE-DL-ELPSKDFSSYRPTAITWLGYLPDG--------RLAVVARREGRSAVFID  274 (582)
T ss_dssp             CEEEEEECSSCEEEEEECTTTCCEE-EC-CCSCSHHHHHCCSEEEEEEECTTS--------CEEEEEEETTEEEEEET
T ss_pred             CEEEEccCCCeeEEEEEcCCCCcEE-Ec-cCCCcChhhhhhccccceeEcCCC--------cEEEEEEcCCcEEEEEE
Confidence            9999654 56  8999999999877 44 57777787778        99998        89999999999999998

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=1.4e-17  Score=150.02  Aligned_cols=295  Identities=13%  Similarity=0.056  Sum_probs=172.8

Q ss_pred             CcceeEEEEccCCCEEEEeeCC---CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578           91 GDSVTGLCFSSDGKCLATACAD---GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM  167 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~d---g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~  167 (440)
                      ...+.+++|+|||++|+....+   ..|.+|++.+++.     .............+.|+|+++.|+.+..+.   .+++
T Consensus        35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~~~spdg~~l~~~~~~~---~l~~  106 (396)
T 3c5m_A           35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-----VQLTEGKGDNTFGGFISTDERAFFYVKNEL---NLMK  106 (396)
T ss_dssp             CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-----EECCCSSCBCTTTCEECTTSSEEEEEETTT---EEEE
T ss_pred             ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-----EEeecCCCCccccceECCCCCEEEEEEcCC---cEEE
Confidence            3447889999999998877543   3677788776532     222222222334488999999998887663   5777


Q ss_pred             eccccccccccccccCCCCCCceeeccccc----ccceeEEEeecccccccCCCCCeEEEEe----eCCceEEEEeCCCC
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKV----HDKRAILTLFGASATYGTADGSTIIASC----SEGTDISIWHGKTG  239 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~----~~d~~i~vwd~~~~  239 (440)
                      ++........-....    ..   |.....    ........ .......++|+++.+++..    ..+..|++||+.++
T Consensus       107 ~d~~~~~~~~~~~~~----~~---~~~~g~~l~~~~~~~~~~-~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g  178 (396)
T 3c5m_A          107 VDLETLEEQVIYTVD----EE---WKGYGTWVANSDCTKLVG-IEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG  178 (396)
T ss_dssp             EETTTCCEEEEEECC----TT---EEEEEEEEECTTSSEEEE-EEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred             EECCCCCcEEEEecc----cc---cCCCCCEEEeccCCcccc-ccccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence            765433111000000    00   100000    00000000 0001134577777333322    46678999999988


Q ss_pred             ceeeeeeCCCCcccEEEecC-CCCeEEEEecC------CCEEEEEeEecCCCceeeeeeeeeeecc--ccceEEEEEcCC
Q 013578          240 KLLGNVDTNQLKNNMAAISP-NGRFLAAAAFT------ADVKVWEIVYSKDGLVKAVTSVMQLKGH--KSAVTWLCFAPN  310 (440)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~  310 (440)
                      +..... .+...+..+.|+| +++.|+..+.+      ..|.+||+....         ...+..+  ...+..++|+|+
T Consensus       179 ~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---------~~~l~~~~~~~~~~~~~~spd  248 (396)
T 3c5m_A          179 ELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---------VRKIKEHAEGESCTHEFWIPD  248 (396)
T ss_dssp             CEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---------CEESSCCCTTEEEEEEEECTT
T ss_pred             cEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---------eeEeeccCCCccccceEECCC
Confidence            765444 3455678899999 78877776654      357777753321         1222222  235788999999


Q ss_pred             CCEEEEEeCC-----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC-CCCEEEEec----------
Q 013578          311 SEQIITASKD-----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS-DGKILAATH----------  374 (440)
Q Consensus       311 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~----------  374 (440)
                      |++|+..+.+     +.|++||+.++....        +    ....+    .. +.|+| ||++++.+.          
T Consensus       249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~--------l----~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~  311 (396)
T 3c5m_A          249 GSAMAYVSYFKGQTDRVIYKANPETLENEE--------V----MVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADA  311 (396)
T ss_dssp             SSCEEEEEEETTTCCEEEEEECTTTCCEEE--------E----EECCS----EE-EEEECSSSSEEEEEECCC-------
T ss_pred             CCEEEEEecCCCCccceEEEEECCCCCeEE--------e----eeCCC----CC-CCccCCCCceEEEecCCcceeeccc
Confidence            9988777544     449999997653210        0    00111    12 78999 999887642          


Q ss_pred             -------CCEEEEEEcCCccchhhhhccccC-----------CeEEEEecCCCCCCCCCcceEEEEeeC-CCeEEEEe--
Q 013578          375 -------GSTLQWLSVETGKVLDTAEKAHEG-----------EITCMAWAPKTIPMGNQQVSVLATSSV-DKKVKLWL--  433 (440)
Q Consensus       375 -------~~~i~i~d~~~~~~~~~~~~~h~~-----------~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~vw~--  433 (440)
                             +..|++||+.+++.. .+ ..|..           .+..++|+|++        +.|+.++. ++...+|.  
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~-~l-~~~~~~~~~~~~~~~~~~~~~~~s~dg--------~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSAQ-KL-CKHSTSWDVLDGDRQITHPHPSFTPND--------DGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBCC-EE-EECCCCCCCBTTBSSTTCCCCEECTTS--------SEEEEEECTTSSCEEEEEE
T ss_pred             cccccCCCCcEEEEecccCceE-Ec-cCCCCccccccccccCCCCCceEccCC--------CeEEEEecCCCCceEEEEE
Confidence                   378999999888753 33 23443           25678999998        66666554 56555554  


Q ss_pred             CCCCC
Q 013578          434 APSLE  438 (440)
Q Consensus       434 ~~~~~  438 (440)
                      +..++
T Consensus       382 ~~~~~  386 (396)
T 3c5m_A          382 VPESY  386 (396)
T ss_dssp             CCTTC
T ss_pred             Ecccc
Confidence            44443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=8.2e-16  Score=135.79  Aligned_cols=261  Identities=9%  Similarity=0.066  Sum_probs=165.8

Q ss_pred             cceeEEEEccCCCEEEEee---------CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC--
Q 013578           92 DSVTGLCFSSDGKCLATAC---------ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL--  160 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s---------~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~--  160 (440)
                      ..+..+++  ||++++...         .++.|.+|++.++...     ..     ..+..++|+|||++|+.+..+.  
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----~l-----~~~~~~~~SpDg~~la~~~~~~~~   82 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-----FI-----ENATMPRISPDGKKIAFMRANEEK   82 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-----EE-----ESCEEEEECTTSSEEEEEEEETTT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-----Ec-----ccCCCeEECCCCCEEEEEEeccCC
Confidence            45677788  898887642         2667999998876421     11     4578899999999999887654  


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC-------------
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE-------------  227 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-------------  227 (440)
                      ....+++++......                        ........ .....++|+|+.++++...             
T Consensus        83 ~~~~l~~~~~~~g~~------------------------~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           83 KVSEIWVADLETLSS------------------------KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             TEEEEEEEETTTTEE------------------------EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             CcceEEEEECCCCce------------------------EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            334566665433210                        00011111 2334568899855544422             


Q ss_pred             -------------CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC-------CEEEEEeEecCCCcee
Q 013578          228 -------------GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA-------DVKVWEIVYSKDGLVK  287 (440)
Q Consensus       228 -------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~  287 (440)
                                   ...|++||+.+++.+..+.. . .+..++|+|+| +++++..++       ...||.+. ..     
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~-----  208 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DG-----  208 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TT-----
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CC-----
Confidence                         35799999998876455544 3 78899999999 777776542       56777766 22     


Q ss_pred             eeeeeeeeeccccceEEEEEcCCCCEEEEEeCC--------CcEEEEecCccccccCCCCccccccccccCCCCCeeeee
Q 013578          288 AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD--------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD  359 (440)
Q Consensus       288 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  359 (440)
                         ....+..+ ..+..+  +|+|++|+.++.+        ..|.+||  ++...              .....+...+.
T Consensus       209 ---~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~--------------~l~~~~~~~~~  266 (347)
T 2gop_A          209 ---KEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM--------------GILDEVDRGVG  266 (347)
T ss_dssp             ---EEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE--------------ESSTTCCSEEE
T ss_pred             ---ceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE--------------eccccCCcccC
Confidence               12223333 445544  9999998887754        3577777  22111              00112234466


Q ss_pred             e-EEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeE-EEEeCC
Q 013578          360 R-LSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKV-KLWLAP  435 (440)
Q Consensus       360 ~-~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i-~vw~~~  435 (440)
                      . +.|+ |+ +++++ .++.+++| +.+++....+  .+.+.|.+++|+| .         ++++++.++.. .+|.++
T Consensus       267 ~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~--~~~~~v~~~~~s~-~---------~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          267 QAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA--KGRHWIMGFDVDE-I---------VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE--CSSSEEEEEEESS-S---------EEEEEECSSSCCEEEEES
T ss_pred             CccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe--cCCCeEEeeeeeC-c---------EEEEEcCCCChHHheEeC
Confidence            5 8999 88 66665 48899999 7766553332  4577899999999 6         66666666665 788765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.76  E-value=7.5e-17  Score=143.33  Aligned_cols=262  Identities=11%  Similarity=0.058  Sum_probs=153.5

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecC-CCCCcceeeEEecCCCCCCCceEEEccCCCeEE-EEeec------C-
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLD-DASSKSFKFLRINLPPGGPPTAVAFADNATSIV-VATHN------L-  160 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~~------~-  160 (440)
                      +...+..++|+|||++|++++.+ .|.+|++. ++...  ...... .. +.+..++|+|++++++ ..+..      . 
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~--~~~~~~-~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~  112 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV--HEASHP-IG-GHPRANDADTNTRAIFLLAAKQPPYAVYAN  112 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE--EEEEEE-CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE--EeeEee-cC-CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence            34578899999999999999988 99999997 44321  111111 11 2367799999999633 22210      0 


Q ss_pred             ----CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578          161 ----SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG  236 (440)
Q Consensus       161 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~  236 (440)
                          ....+.+|+........            ....... +     .....+..+.++|+|+.++++...++.|++|++
T Consensus       113 ~~~~~~g~v~v~~~~~~g~~~------------~~~~~~~-~-----~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~  174 (365)
T 1jof_A          113 PFYKFAGYGNVFSVSETGKLE------------KNVQNYE-Y-----QENTGIHGMVFDPTETYLYSADLTANKLWTHRK  174 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEE------------EEEEEEE-C-----CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             eeecCCceEEEEccCCCCcCc------------ceEeeEE-e-----CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence                12234444432100000            0000000 0     001123345568999844444445678999999


Q ss_pred             C-CCcee--eeeeC--CCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceee-eeeeeeee----cccc-----
Q 013578          237 K-TGKLL--GNVDT--NQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKA-VTSVMQLK----GHKS-----  300 (440)
Q Consensus       237 ~-~~~~~--~~~~~--~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-~~~~~~~~----~h~~-----  300 (440)
                      . +++..  ..+..  +...+..++|+|+|++|++++. ++.|.+|++.... +.... ...+..+.    +|..     
T Consensus       175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~  253 (365)
T 1jof_A          175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT-HMPVYTHHSFPLIPPGIPDRDPETGKG  253 (365)
T ss_dssp             CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred             CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC-CcEEEccceEEcCCCCcCCcccccccc
Confidence            8 67643  33332  2456788999999999988875 6889999885321 11110 11122221    2332     


Q ss_pred             -ceEEEE-EcCCCCEEEEEeCCC------cEEEEecC-ccccccCCCCccccccccccCCCCCeeeeeeEEeCC---CCC
Q 013578          301 -AVTWLC-FAPNSEQIITASKDG------TLRVWNIN-VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS---DGK  368 (440)
Q Consensus       301 -~v~~~~-~~p~~~~l~s~~~dg------~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~  368 (440)
                       .+..++ |+|||++|++++.+.      .|.+|++. ++...       .... ..   ..+......++|+|   ||+
T Consensus       254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~-------~~~~-~~---~~~~~~~~~~a~sp~~~dg~  322 (365)
T 1jof_A          254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE-------KQLF-LS---PTPTSGGHSNAVSPCPWSDE  322 (365)
T ss_dssp             SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE-------EEEE-EE---ECSSCCTTCCCEEECTTCTT
T ss_pred             cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE-------Eeee-ee---ecCCCCcccceecCCCcCCC
Confidence             588999 999999888766432      89999996 22110       0000 00   00111244689999   899


Q ss_pred             EEEEec--CCEEEEEEcCCc
Q 013578          369 ILAATH--GSTLQWLSVETG  386 (440)
Q Consensus       369 ~l~~~~--~~~i~i~d~~~~  386 (440)
                      +|+++.  ++.|.+|++...
T Consensus       323 ~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          323 WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEECSSSCEEEEEEEETT
T ss_pred             EEEEEEcCCCeEEEEEEchh
Confidence            998875  489999998765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.75  E-value=2.4e-16  Score=139.32  Aligned_cols=279  Identities=10%  Similarity=0.074  Sum_probs=172.9

Q ss_pred             cccccccCcceeEEEEccCCCEEEEee----------CCCcEEEEecCCCCCcceeeEEecC---CCCCCCceEEEccCC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATAC----------ADGVIRVHKLDDASSKSFKFLRINL---PPGGPPTAVAFADNA  150 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s----------~dg~v~vW~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~~~~  150 (440)
                      +.++..+..+  .++|+|||++|++++          .+++|.+||..+.+..  ..+....   .++..+..++|+|+|
T Consensus        44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~--~~i~~~~~~~~~g~~p~~i~~spdg  119 (361)
T 2oiz_A           44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE--KEISLPPKRVQGLNYDGLFRQTTDG  119 (361)
T ss_dssp             EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE--EEEEECTTBCCBCCCGGGEEECTTS
T ss_pred             EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE--EEEEcCccccccCCCcceEEECCCC
Confidence            3455556555  899999999999886          3678999998765422  1222111   123567899999999


Q ss_pred             CeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce
Q 013578          151 TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD  230 (440)
Q Consensus       151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  230 (440)
                      ++++++.... ...+.+++..........     +       ..     .       ........|++...+++.+.||.
T Consensus       120 ~~l~v~n~~~-~~~v~v~d~~~~~~~~~~-----i-------~~-----~-------~~~~v~~~p~~~~~~~~~~~dg~  174 (361)
T 2oiz_A          120 KFIVLQNASP-ATSIGIVDVAKGDYVEDV-----T-------AA-----A-------GCWSVIPQPNRPRSFMTICGDGG  174 (361)
T ss_dssp             SEEEEEEESS-SEEEEEEETTTTEEEEEE-----G-------GG-----T-------TEEEEEECTTSSSEEEEEETTSS
T ss_pred             CEEEEECCCC-CCeEEEEECCCCcEEEEE-----e-------cC-----C-------CcceeEEcCCCCeeEEEECCCCc
Confidence            9999886531 245666655443111000     0       00     0       00001235666557788889999


Q ss_pred             EEEEeCCC-Cceee------eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc----
Q 013578          231 ISIWHGKT-GKLLG------NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK----  299 (440)
Q Consensus       231 i~vwd~~~-~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~----  299 (440)
                      +.+|+... ++...      .+.....+ ..+.+++++..++..+.++.+.++|+..........+........+.    
T Consensus       175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p  253 (361)
T 2oiz_A          175 LLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP  253 (361)
T ss_dssp             EEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE
T ss_pred             EEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc
Confidence            99998865 55441      12222222 23345677878888888999999997533210000000000000000    


Q ss_pred             cceEEEEEcCCCCEEEEEeC-----------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578          300 SAVTWLCFAPNSEQIITASK-----------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK  368 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  368 (440)
                      .....++|+|++..++.+..           .+.|.+||+.+.+.+..       ++       .+.  ...++|+|||+
T Consensus       254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~-------i~-------~~~--p~~ia~spdg~  317 (361)
T 2oiz_A          254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR-------IP-------GRD--ALSMTIDQQRN  317 (361)
T ss_dssp             CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE-------EE-------CTT--CCEEEEETTTT
T ss_pred             CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE-------Ee-------cCC--eeEEEECCCCC
Confidence            11223789999888776543           34799999987654321       11       111  56899999999


Q ss_pred             EEEEecCCEEEEEEcCCc--cchhhhhccccCCeEEEEecCCC
Q 013578          369 ILAATHGSTLQWLSVETG--KVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       369 ~l~~~~~~~i~i~d~~~~--~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      +|+++.++.|.+||..++  +.+..+ ..+......++++|+|
T Consensus       318 ~l~v~n~~~v~v~D~~t~~l~~~~~i-~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          318 LMLTLDGGNVNVYDISQPEPKLLRTI-EGAAEASLQVQFHPVG  359 (361)
T ss_dssp             EEEEECSSCEEEEECSSSSCEEEEEE-TTSCSSEEEEEECCCS
T ss_pred             EEEEeCCCeEEEEECCCCcceeeEEe-ccCCCCcEEEEecCCC
Confidence            998877799999999999  888876 2577788999999997

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.74  E-value=9.7e-16  Score=148.40  Aligned_cols=264  Identities=13%  Similarity=0.061  Sum_probs=168.9

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCC-----cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADG-----VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg-----~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      +|...+..++|||||++||.++.++     .|++||+.+++.....     .. ...+..++|+||++.|+.+..+....
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-----~~-~~~~~~~~wspDg~~l~~~~~~~~~~  195 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-----LE-RVKFSCMAWTHDGKGMFYNAYPQQDG  195 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-----EE-EECSCCEEECTTSSEEEEEECCCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-----cc-CcccceEEEEeCCCEEEEEEECCccc
Confidence            5666899999999999999776543     8999999887532211     11 12367899999999999887652110


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce--
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL--  241 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--  241 (440)
                      .        .                                           ++.  .-.......|++|++.+++.  
T Consensus       196 ~--------~-------------------------------------------~~~--~~~~~~~~~v~~~~l~t~~~~~  222 (710)
T 2xdw_A          196 K--------S-------------------------------------------DGT--ETSTNLHQKLYYHVLGTDQSED  222 (710)
T ss_dssp             C--------C-------------------------------------------SSS--CCCCCCCCEEEEEETTSCGGGC
T ss_pred             c--------c-------------------------------------------ccc--ccccCCCCEEEEEECCCCcccc
Confidence            0        0                                           000  00001234589999987752  


Q ss_pred             --eeeeeCCCCcccEEEecCCCCeEEEEec-----CCCEEEEEeEe------cCCCceeeeeeeeeeeccccceEEEEEc
Q 013578          242 --LGNVDTNQLKNNMAAISPNGRFLAAAAF-----TADVKVWEIVY------SKDGLVKAVTSVMQLKGHKSAVTWLCFA  308 (440)
Q Consensus       242 --~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~------~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (440)
                        +.....+...+..+.|+|||++|+.++.     +..|++||+..      +..       ....+..+...+.. .|+
T Consensus       223 ~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-------~~~~l~~~~~~~~~-~~s  294 (710)
T 2xdw_A          223 ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-------KWVKLIDNFEGEYD-YVT  294 (710)
T ss_dssp             EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-------CCEEEECSSSSCEE-EEE
T ss_pred             eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-------ceEEeeCCCCcEEE-EEe
Confidence              2222223344668899999999998875     56789999864      210       23344556555555 488


Q ss_pred             CCCCEEEEEeCC----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC--EEEEE
Q 013578          309 PNSEQIITASKD----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS--TLQWL  381 (440)
Q Consensus       309 p~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~--~i~i~  381 (440)
                      |+|..|+..+.+    +.|.+||+.++...     ....+    .. ......+..++|++++.++++.. ++  .|++|
T Consensus       295 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-----~~~~l----~~-~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~  364 (710)
T 2xdw_A          295 NEGTVFTFKTNRHSPNYRLINIDFTDPEES-----KWKVL----VP-EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH  364 (710)
T ss_dssp             EETTEEEEEECTTCTTCEEEEEETTSCCGG-----GCEEE----EC-CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred             ccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----cceec----cC-CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE
Confidence            899887766643    35999998754210     00111    11 11112466788887777777754 55  57778


Q ss_pred             EcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEE-EeeC---CCeEEEEeCCCCC
Q 013578          382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA-TSSV---DKKVKLWLAPSLE  438 (440)
Q Consensus       382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~~---Dg~i~vw~~~~~~  438 (440)
                      ++.+|+.+..+ ..+.+.+..+.++|++        ..|+ +.++   .++|.+||+.+++
T Consensus       365 ~~~~g~~~~~l-~~~~~~v~~~~~s~d~--------~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          365 DLATGALLKIF-PLEVGSVVGYSGQKKD--------TEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ETTTCCEEEEE-CCCSSEEEEEECCTTC--------SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCCCCEEEec-CCCCceEEEEecCCCC--------CEEEEEEeCCCCCCEEEEEECCCCc
Confidence            88788766666 3567789999999986        4443 3333   5789999998776

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.73  E-value=1.9e-16  Score=140.00  Aligned_cols=153  Identities=12%  Similarity=0.168  Sum_probs=109.0

Q ss_pred             CCeEEEEeeCCceEEEEeCCCCceeeeeeCCC-CcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578          218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ-LKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      +..++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++++ ..++.|.+||+..++        ....+
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--------~~~~~   81 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--------NTFHA   81 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--------EEEEE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--------EEEEE
Confidence            34488999999999999999999888877543 257889999999876554 468899999986443        22233


Q ss_pred             ec-c-----ccceEEEEEcCCCCEEEEEeCC------------CcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578          296 KG-H-----KSAVTWLCFAPNSEQIITASKD------------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ  357 (440)
Q Consensus       296 ~~-h-----~~~v~~~~~~p~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (440)
                      .. +     ...+.+++|+|+|++|++++.+            +.|.+||+.++.....    ....     .   +...
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~----~~~~-----~---~~~~  149 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP----VRTF-----P---MPRQ  149 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC----SEEE-----E---CCSS
T ss_pred             EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce----eeec-----c---CCCc
Confidence            22 1     2347889999999999988865            8999999987533211    1111     0   1113


Q ss_pred             eeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhh
Q 013578          358 YDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTA  392 (440)
Q Consensus       358 v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~  392 (440)
                      +.+++|+|+|+ ++++ ++.|++||..+++....+
T Consensus       150 ~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~~~~~~  182 (349)
T 1jmx_B          150 VYLMRAADDGS-LYVA-GPDIYKMDVKTGKYTVAL  182 (349)
T ss_dssp             CCCEEECTTSC-EEEE-SSSEEEECTTTCCEEEEE
T ss_pred             ccceeECCCCc-EEEc-cCcEEEEeCCCCceeccc
Confidence            67899999999 4444 334999999988866544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.72  E-value=2.4e-15  Score=132.90  Aligned_cols=290  Identities=10%  Similarity=0.028  Sum_probs=172.2

Q ss_pred             CCCEEEEee------CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec-------CCcceEEee
Q 013578          102 DGKCLATAC------ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN-------LSGCSLYMY  168 (440)
Q Consensus       102 dg~~l~t~s------~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~-------~~~~~~~~~  168 (440)
                      ++++++...      .|+.|.+||..+++..     ........ . .++|+|++++++++...       .....+.+|
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~-----~~i~~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~   86 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFL-----GMVPTAFN-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVW   86 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEE-----EEEECCEE-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEE-----EEecCCCC-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEE
Confidence            555555543      4789999998776421     11112223 3 89999999999988641       112346666


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC-CceEEEEeCCCCceeee-ee
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE-GTDISIWHGKTGKLLGN-VD  246 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~-~~  246 (440)
                      +............             ...+    ......+..+.++|+|+.++++... ++.|.+||+.+++.+.. +.
T Consensus        87 d~~t~~~~~~i~~-------------~~~~----~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~  149 (361)
T 2oiz_A           87 DADKLTFEKEISL-------------PPKR----VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA  149 (361)
T ss_dssp             ETTTCCEEEEEEE-------------CTTB----CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred             ECcCCcEEEEEEc-------------Cccc----cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence            5443211000000             0000    0001234556679999944444433 68899999999988877 65


Q ss_pred             CCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCcee-eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEE
Q 013578          247 TNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVK-AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLR  324 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~  324 (440)
                      ...  ...+.+.|++ ..+++.+.||.+.+|++....  ... .......+..+..++ .+.++|++..++..+.++.|.
T Consensus       150 ~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g--~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~  224 (361)
T 2oiz_A          150 AAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG--KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVY  224 (361)
T ss_dssp             GTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTS--SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEE
T ss_pred             CCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCC--cEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEE
Confidence            422  1224566765 677888899999999875322  111 000001222222222 334467787777788899999


Q ss_pred             EEecCccccccCCCCcccccccc---ccCCCCCeeeeeeEEeCCCCCEEEEec------------CCEEEEEEcCCccch
Q 013578          325 VWNINVRYHLDEDPKTLKVLPIP---LLDSNGATLQYDRLSLSSDGKILAATH------------GSTLQWLSVETGKVL  389 (440)
Q Consensus       325 iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~------------~~~i~i~d~~~~~~~  389 (440)
                      ++|+......     ....+...   .............++|+|+++.+.++.            .+.|.+||+.+++.+
T Consensus       225 v~d~~~~~~~-----~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v  299 (361)
T 2oiz_A          225 SADFSGDEVK-----VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV  299 (361)
T ss_dssp             EEECSSSSCE-----EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE
T ss_pred             EEEecCCCce-----ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE
Confidence            9998643211     00000000   000000011122378999988666532            248999999999999


Q ss_pred             hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          390 DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       390 ~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      ..+. .+.  +.+++|+|++        ++|++++. +.|.+||+.++
T Consensus       300 ~~i~-~~~--p~~ia~spdg--------~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          300 ARIP-GRD--ALSMTIDQQR--------NLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEE-CTT--CCEEEEETTT--------TEEEEECS-SCEEEEECSSS
T ss_pred             EEEe-cCC--eeEEEECCCC--------CEEEEeCC-CeEEEEECCCC
Confidence            8884 444  9999999998        78888776 99999999887

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.72  E-value=4e-15  Score=128.15  Aligned_cols=245  Identities=11%  Similarity=0.102  Sum_probs=159.8

Q ss_pred             cccccccCcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      +..+..+.....+++|+|+|+ +++++..++.|..|+..++ .   ...   ..+...+.+++++++++           
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~---~~~---~~~~~~~~~l~~~~dg~-----------   81 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L---SPE---MHPSHHQNGHCLNKQGH-----------   81 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E---EEE---ESSCSSEEEEEECTTCC-----------
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e---EEE---ECCCCCcceeeECCCCc-----------
Confidence            455666777889999999998 7888888999999998764 1   111   12334566777776654           


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                                                                                ++++...++.|.+||..+++..
T Consensus        82 ----------------------------------------------------------l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           82 ----------------------------------------------------------LIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             ----------------------------------------------------------EEEEETTTTEEEEECSTTCCEE
T ss_pred             ----------------------------------------------------------EEEEecCCCeEEEEcCCCCcEE
Confidence                                                                      3444444566888888777654


Q ss_pred             eeeeC----CCCcccEEEecCCCCeEEE----Eec-----------CCCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578          243 GNVDT----NQLKNNMAAISPNGRFLAA----AAF-----------TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT  303 (440)
Q Consensus       243 ~~~~~----~~~~v~~~~~s~~~~~l~~----~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~  303 (440)
                      .....    ....+..++++|+|+++++    |+.           .+.-.||.+....        ....+..+.....
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g--------~~~~~~~~~~~~~  175 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG--------TLSAPIRDRVKPN  175 (296)
T ss_dssp             EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS--------CEEEEECCCSSEE
T ss_pred             EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCC--------CEEEeecCCCCCc
Confidence            33221    1224567999999998887    331           0122455543321        1223344556778


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecC-ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEE
Q 013578          304 WLCFAPNSEQIITASKDGTLRVWNIN-VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLS  382 (440)
Q Consensus       304 ~~~~~p~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d  382 (440)
                      .++|+|+++.|++.+.++.|.+||+. .+....    ....+       ......+..++++++|+++++. ++.|.+|+
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~----~~~~~-------~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~  243 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEY----QGVHF-------TVEPGKTDGLRVDAGGLIWASA-GDGVHVLT  243 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEE----EEEEE-------CCSSSCCCSEEEBTTSCEEEEE-TTEEEEEC
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcC----CCeEe-------eCCCCCCCeEEECCCCCEEEEc-CCeEEEEC
Confidence            99999999988777788999999986 221100    00011       0112234579999999987777 89999999


Q ss_pred             cCCccchhhhhccccCCeEEEEe-cCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          383 VETGKVLDTAEKAHEGEITCMAW-APKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       383 ~~~~~~~~~~~~~h~~~v~~v~~-~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      .. ++.+..+ ..+.. +++++| .|++        ..|+.++.++ +.-+++.+
T Consensus       244 ~~-g~~~~~~-~~~~~-~~~~~f~~~d~--------~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          244 PD-GDELGRV-LTPQT-TSNLCFGGPEG--------RTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             TT-SCEEEEE-ECSSC-CCEEEEESTTS--------CEEEEEETTE-EEEEECSC
T ss_pred             CC-CCEEEEE-ECCCC-ceeEEEECCCC--------CEEEEEcCCe-EEEEEccc
Confidence            86 7766666 35556 999999 5776        6777777664 44444444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.72  E-value=5.3e-16  Score=149.81  Aligned_cols=261  Identities=12%  Similarity=0.027  Sum_probs=158.2

Q ss_pred             cccCcceeEEEEccCCCEEE-----EeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           88 KGHGDSVTGLCFSSDGKCLA-----TACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~-----t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ++|...+.+++|||||++||     .|+.+.+|++||+.+++...    ..... ......++|+||++.|+.++.+...
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~----~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~  191 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK----VDVIE-GGKYATPKWTPDSKGFYYEWLPTDP  191 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS----SCCBS-CCTTCCCEECTTSSEEEEEECCCCT
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC----CcccC-cccccceEEecCCCEEEEEEecCCC
Confidence            36777899999999999999     45556789999999875320    00011 1123689999999998887765210


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--  240 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--  240 (440)
                      .         .                                             .  .........|++|++.+++  
T Consensus       192 ~---------~---------------------------------------------~--~~~~~~~~~v~~~~l~t~~~~  215 (695)
T 2bkl_A          192 S---------I---------------------------------------------K--VDERPGYTTIRYHTLGTEPSK  215 (695)
T ss_dssp             T---------S---------------------------------------------C--GGGGGGGCEEEEEETTSCGGG
T ss_pred             C---------C---------------------------------------------c--cccCCCCCEEEEEECCCCchh
Confidence            0         0                                             0  0000123448999988775  


Q ss_pred             --eeeeeeCCCCcccEEEecCCCCeEEEEecCC----CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578          241 --LLGNVDTNQLKNNMAAISPNGRFLAAAAFTA----DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI  314 (440)
Q Consensus       241 --~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  314 (440)
                        .+.....+...+..+.|+|||++|+.++.++    .|++|+...+         ....+..+...+....+ ++|.++
T Consensus       216 ~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~---------~~~~l~~~~~~~~~~~~-~~g~l~  285 (695)
T 2bkl_A          216 DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK---------DFRLLVKGVGAKYEVHA-WKDRFY  285 (695)
T ss_dssp             CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS---------SCEEEEECSSCCEEEEE-ETTEEE
T ss_pred             ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC---------ceEEeecCCCceEEEEe-cCCcEE
Confidence              2333333445677899999999999887665    4555532111         13334445556666666 566644


Q ss_pred             EEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC-Cccch
Q 013578          315 ITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE-TGKVL  389 (440)
Q Consensus       315 ~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~-~~~~~  389 (440)
                      +...   .++.|.+||+.++...     ....    +. .......+..++|+ ++.++++.. ++..++|... +++..
T Consensus       286 ~~s~~~~~~~~l~~~d~~~~~~~-----~~~~----l~-~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~  354 (695)
T 2bkl_A          286 VLTDEGAPRQRVFEVDPAKPARA-----SWKE----IV-PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV  354 (695)
T ss_dssp             EEECTTCTTCEEEEEBTTBCSGG-----GCEE----EE-CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred             EEECCCCCCCEEEEEeCCCCCcc-----CCeE----Ee-cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee
Confidence            4443   2578999998754210     0010    01 11112346677887 666666654 7777666544 35544


Q ss_pred             hhhhccccCCeEEEEecCCCCCCCCCcceEEE-Eee---CCCeEEEEeCCCCC
Q 013578          390 DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA-TSS---VDKKVKLWLAPSLE  438 (440)
Q Consensus       390 ~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~---~Dg~i~vw~~~~~~  438 (440)
                      ..+...+.+.|..++++|++        ..|+ +.+   ..++|++||+.+++
T Consensus       355 ~~l~~~~~~~v~~~~~s~d~--------~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          355 RTVQLPGVGAASNLMGLEDL--------DDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EECCCSSSSEECCCBSCTTC--------SEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEecCCCCeEEEEeecCCCC--------CEEEEEEcCCCCCCEEEEEECCCCc
Confidence            44432236678889999986        4444 332   35789999998765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.71  E-value=6e-15  Score=125.25  Aligned_cols=240  Identities=8%  Similarity=-0.016  Sum_probs=157.1

Q ss_pred             ceeEEEEccCCCEEE-EeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578           93 SVTGLCFSSDGKCLA-TACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE  171 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~-t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~  171 (440)
                      ...+++++++|++++ +.+.++.|.+|+..+....     .........+.++++.++++                    
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~p~~i~~~~~g~--------------------   79 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-----VLPFNGLYQPQGLAVDGAGT--------------------   79 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-----ECCCCSCCSCCCEEECTTCC--------------------
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-----eEeeCCcCCcceeEECCCCC--------------------
Confidence            678999999999777 5577889999987543211     11112223456666665544                    


Q ss_pred             cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc
Q 013578          172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK  251 (440)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  251 (440)
                                                                       ++++.. ++.|.+||................
T Consensus        80 -------------------------------------------------l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~  109 (270)
T 1rwi_B           80 -------------------------------------------------VYVTDF-NNRVVTLAAGSNNQTVLPFDGLNY  109 (270)
T ss_dssp             -------------------------------------------------EEEEET-TTEEEEECTTCSCCEECCCCSCSS
T ss_pred             -------------------------------------------------EEEEcC-CCEEEEEeCCCceEeeeecCCcCC
Confidence                                                             333333 667888887654432221122245


Q ss_pred             ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q 013578          252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR  331 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~  331 (440)
                      +..++++++|+++++...++.|.+|+.....        ...........+.+++++|+|+++++...++.|.+||....
T Consensus       110 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          110 PEGLAVDTQGAVYVADRGNNRVVKLAAGSKT--------QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTCCS--------CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             CcceEECCCCCEEEEECCCCEEEEEECCCce--------eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            7889999999977777778889998642211        11111223346788999999997777777889999998754


Q ss_pred             ccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCC
Q 013578          332 YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTI  410 (440)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~  410 (440)
                      .....              ..........++++++|.++++.. ++.|.+|+.......... ..+...+.++++++++ 
T Consensus       182 ~~~~~--------------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g-  245 (270)
T 1rwi_B          182 NQVVL--------------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-FTGLNTPLAVAVDSDR-  245 (270)
T ss_dssp             CEEEC--------------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC-CCSCSCEEEEEECTTC-
T ss_pred             ceEee--------------cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec-cCCCCCceeEEECCCC-
Confidence            32110              001113356899999998777654 789999998765443322 2344678999999998 


Q ss_pred             CCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          411 PMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       411 ~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                             +++++...++.|+++++...+
T Consensus       246 -------~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          246 -------TVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             -------CEEEEEGGGTEEEEECCCGGG
T ss_pred             -------CEEEEECCCCEEEEEcCCCcc
Confidence                   788888899999999987654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=1.7e-14  Score=126.57  Aligned_cols=246  Identities=13%  Similarity=0.096  Sum_probs=152.6

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ....+.+|...+.+++|+++|++++++..++.|.+||..++...     .....+...+.+++|+++++.+++       
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~i~~~~dg~l~v~-------  103 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-----RPFVSHKANPAAIKIHKDGRLFVC-------  103 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-----EEEECSSSSEEEEEECTTSCEEEE-------
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-----EEeeCCCCCcceEEECCCCcEEEE-------
Confidence            34566777788899999999998888888999999998765422     111133456788888877653332       


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC----ceEEEEeCCC
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG----TDISIWHGKT  238 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----~~i~vwd~~~  238 (440)
                                                                                    ...+    +.|.+||..+
T Consensus       104 --------------------------------------------------------------~~~~~~~~~~i~~~d~~~  121 (333)
T 2dg1_A          104 --------------------------------------------------------------YLGDFKSTGGIFAATENG  121 (333)
T ss_dssp             --------------------------------------------------------------ECTTSSSCCEEEEECTTS
T ss_pred             --------------------------------------------------------------eCCCCCCCceEEEEeCCC
Confidence                                                                          2222    4688888877


Q ss_pred             Cceeeeee--CCCCcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC
Q 013578          239 GKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE  312 (440)
Q Consensus       239 ~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  312 (440)
                      ++....+.  .....+..++++|+|+++++...+    +...||.+.... +      ....+..+...+.+++|+|+++
T Consensus       122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~-~------~~~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-R------TVTPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-C------CEEEEEEEESSEEEEEECTTSS
T ss_pred             CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC-C------EEEEeecCCCcccceEECCCCC
Confidence            65543332  233467889999999877765431    234555553221 0      1111222334578999999998


Q ss_pred             EEE-EEeCCCcEEEEecCcc-ccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccch
Q 013578          313 QII-TASKDGTLRVWNINVR-YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVL  389 (440)
Q Consensus       313 ~l~-s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~  389 (440)
                      .|+ +.+.++.|.+||+++. .....    ... . ......++ ..+..++++++|+++++.. ++.|.+||. +++.+
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~----~~~-~-~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~  266 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQP----FGA-T-IPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPI  266 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEE----EEE-E-EEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEE
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCccc----ccc-e-EEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEE
Confidence            664 4456789999998631 11100    000 0 00001111 2456799999999777654 689999998 45555


Q ss_pred             hhhhcccc------CCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578          390 DTAEKAHE------GEITCMAWAPKTIPMGNQQVSVLATSSVD  426 (440)
Q Consensus       390 ~~~~~~h~------~~v~~v~~~~~~~~~~~~~~~~l~t~~~D  426 (440)
                      ..+. .+.      ..+.+++|+|++        ..|+.++.+
T Consensus       267 ~~~~-~~~~~~g~~~~~~~~~~~~dg--------~~L~v~~~~  300 (333)
T 2dg1_A          267 GQIL-IPGRDEGHMLRSTHPQFIPGT--------NQLIICSND  300 (333)
T ss_dssp             EEEE-CTTGGGTCSCBCCEEEECTTS--------CEEEEEEEC
T ss_pred             EEEE-cCCCccccccCcceEEECCCC--------CEEEEEeCc
Confidence            4442 222      268999999986        455554444

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.69  E-value=1.9e-15  Score=135.62  Aligned_cols=242  Identities=8%  Similarity=-0.008  Sum_probs=150.5

Q ss_pred             eEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578          143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII  222 (440)
Q Consensus       143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  222 (440)
                      ..+|+|||++|+.++.......+++++............                +.       .......++|||+ .|
T Consensus        40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~----------------~~-------~~~~~~~~spdg~-~l   95 (388)
T 3pe7_A           40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG----------------RG-------DNTFGGFLSPDDD-AL   95 (388)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS----------------SC-------BCSSSCEECTTSS-EE
T ss_pred             CccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC----------------CC-------CCccceEEcCCCC-EE
Confidence            378999999999998754455677777554321110000                00       0001234589999 77


Q ss_pred             EEeeCCceEEEEeCCCCceeeeeeCCCCcccEE--EecCCCCeEEEEe----------------------cCCCEEEEEe
Q 013578          223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA--AISPNGRFLAAAA----------------------FTADVKVWEI  278 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~----------------------~dg~i~i~d~  278 (440)
                      +.++.++.|++||+.+++....+..+...+...  .+++++++++...                      .+..|.+||+
T Consensus        96 ~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  175 (388)
T 3pe7_A           96 FYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL  175 (388)
T ss_dssp             EEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET
T ss_pred             EEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC
Confidence            777788899999999998776666555444333  3589999887432                      3456888887


Q ss_pred             EecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCC------CcEEEEecCccccccCCCCccccccccccCC
Q 013578          279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKD------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDS  351 (440)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  351 (440)
                      ..++         ...+..+...+..++|+| +|+.|+..+.+      ..|.++|+......        .+     ..
T Consensus       176 ~~g~---------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--------~l-----~~  233 (388)
T 3pe7_A          176 KTGE---------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR--------KV-----KT  233 (388)
T ss_dssp             TTCC---------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE--------ES-----CC
T ss_pred             CCCc---------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE--------Ee-----ee
Confidence            5543         333445667789999999 99998877753      36777777643211        00     01


Q ss_pred             CCCeeeeeeEEeCCCCCEEEEec---CC---EEEEEEcCCccchhhhh-ccccC---CeEEEEecCCCCCCCCCcceEEE
Q 013578          352 NGATLQYDRLSLSSDGKILAATH---GS---TLQWLSVETGKVLDTAE-KAHEG---EITCMAWAPKTIPMGNQQVSVLA  421 (440)
Q Consensus       352 ~~~~~~v~~~~~s~~g~~l~~~~---~~---~i~i~d~~~~~~~~~~~-~~h~~---~v~~v~~~~~~~~~~~~~~~~l~  421 (440)
                      ......+..++|+|||+.|+...   ++   .|++||+.+++...... .++..   ....+.|+||+        +.|+
T Consensus       234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg--------~~l~  305 (388)
T 3pe7_A          234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG--------SDAP  305 (388)
T ss_dssp             CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE--------CCC-
T ss_pred             CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC--------Ccce
Confidence            11113466789999999776532   22   49999999987432211 11110   12224799998        5565


Q ss_pred             Ee---------eCCCeEEEEeCCCCC
Q 013578          422 TS---------SVDKKVKLWLAPSLE  438 (440)
Q Consensus       422 t~---------~~Dg~i~vw~~~~~~  438 (440)
                      ..         ..+..|++|++.+++
T Consensus       306 ~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          306 VDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             -----------CCCCEEEEEETTTTE
T ss_pred             eEeeeccccccCCCCEEEEEeccCCc
Confidence            43         456789999998764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=4.2e-15  Score=143.11  Aligned_cols=209  Identities=11%  Similarity=0.011  Sum_probs=127.1

Q ss_pred             cccccccCccee---------EEEEc--cCCCE-EEEeeC-CCcEEEEecC--C-CCCcceeeEEecCC-----CCCCCc
Q 013578           84 VNTLKGHGDSVT---------GLCFS--SDGKC-LATACA-DGVIRVHKLD--D-ASSKSFKFLRINLP-----PGGPPT  142 (440)
Q Consensus        84 ~~~l~~H~~~V~---------~l~~s--~dg~~-l~t~s~-dg~v~vW~~~--~-~~~~~~~~~~~~~~-----~~~~v~  142 (440)
                      .+.+..|...+.         ...|+  |||++ |+.++. +..|.+|++.  . +..     .. ...     +...+.
T Consensus        60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-----~~-l~~~~~~~~~~~~~  133 (662)
T 3azo_A           60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-----RP-LTPVSAVGGGLRWA  133 (662)
T ss_dssp             EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-----EE-CSCCCCSTTCEEEE
T ss_pred             cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-----Ee-ccCCccCCCCcccc
Confidence            344556665555         56565  99998 776654 4555555554  2 221     11 112     445678


Q ss_pred             eEEEccCCCeEEEEeec-------CCcceEEeecccc------ccccccccccCCCCCCceeecccccccceeEEEeecc
Q 013578          143 AVAFADNATSIVVATHN-------LSGCSLYMYGEEK------AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGA  209 (440)
Q Consensus       143 ~v~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (440)
                      .++|+|||+.|++++.+       .....+++|+...      ....       .+.      .   .+       ....
T Consensus       134 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~l~------~---~~-------~~~~  190 (662)
T 3azo_A          134 DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-------ELS------D---DA-------HRFV  190 (662)
T ss_dssp             EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-------ESS------C---SC-------SSEE
T ss_pred             CcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-------EEE------e---cC-------CCcc
Confidence            99999999999998876       3335677776554      1100       000      0   00       0112


Q ss_pred             cccccCCCCCeEEEEeeCC--------ceEEEEeCC-CC---ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEE
Q 013578          210 SATYGTADGSTIIASCSEG--------TDISIWHGK-TG---KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWE  277 (440)
Q Consensus       210 ~~~~~~~~~~~~l~s~~~d--------~~i~vwd~~-~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  277 (440)
                      ....++|||+ .|+.++.+        ..|++||+. ++   +.......+...+..+.|+|||+++++++.++...||.
T Consensus       191 ~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~  269 (662)
T 3azo_A          191 TGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHR  269 (662)
T ss_dssp             CCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEE
T ss_pred             cCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEE
Confidence            2344689999 55544433        479999998 56   44333444467788999999999888888888656665


Q ss_pred             eEecCCCceeeeeeeeeeeccccc--------eEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578          278 IVYSKDGLVKAVTSVMQLKGHKSA--------VTWLCFAPNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~h~~~--------v~~~~~~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                      ++... +.     .......+...        +.+++|+|+++++++++. +.++||.+.
T Consensus       270 ~~~~~-~~-----~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          270 VDPAT-GA-----ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             ECTTT-CC-----EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred             EECCC-Cc-----eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence            54211 11     11111122211        567899999999999998 999999543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.66  E-value=1.5e-15  Score=147.70  Aligned_cols=200  Identities=12%  Similarity=0.130  Sum_probs=138.1

Q ss_pred             ccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc---c--cEEEecCCCCeEEEEecC---------CCEEEEEe
Q 013578          213 YGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK---N--NMAAISPNGRFLAAAAFT---------ADVKVWEI  278 (440)
Q Consensus       213 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---v--~~~~~s~~~~~l~~~~~d---------g~i~i~d~  278 (440)
                      .++++|+ +++++  |+.|++||+.+++....+..+...   +  ..++|||||++|+.++.+         +.+.+||+
T Consensus        23 ~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~   99 (740)
T 4a5s_A           23 RWISDHE-YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (740)
T ss_dssp             EECSSSE-EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             EECCCCc-EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence            4478886 77775  899999999999987777665432   2  337899999999999876         56779998


Q ss_pred             EecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCe---
Q 013578          279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT---  355 (440)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  355 (440)
                      ..++         ...+..|.+.+...+|||||+.||.+. |+.|++||+.++...+-.......   ..  ..++.   
T Consensus       100 ~~~~---------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~---~~--~~g~~~~v  164 (740)
T 4a5s_A          100 NKRQ---------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKED---II--YNGITDWV  164 (740)
T ss_dssp             TTTE---------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTT---TE--EESBCCHH
T ss_pred             CCCc---------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcc---ce--ecCccccc
Confidence            6553         334666778899999999999998885 689999999876432110000000   00  00000   


Q ss_pred             ------eeeeeEEeCCCCCEEEEec--CC-----------------------------------EEEEEEcCC---ccc-
Q 013578          356 ------LQYDRLSLSSDGKILAATH--GS-----------------------------------TLQWLSVET---GKV-  388 (440)
Q Consensus       356 ------~~v~~~~~s~~g~~l~~~~--~~-----------------------------------~i~i~d~~~---~~~-  388 (440)
                            .....+.|||||+.||...  ++                                   .|++||+.+   ++. 
T Consensus       165 ~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~  244 (740)
T 4a5s_A          165 YEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA  244 (740)
T ss_dssp             HHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC
T ss_pred             ccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc
Confidence                  1123589999999998752  11                                   588899998   731 


Q ss_pred             -hhhhhc-----cccCCeEEEEecCCCCCCCCCcceEEEEeeC----CCeEEEEeCCCCC
Q 013578          389 -LDTAEK-----AHEGEITCMAWAPKTIPMGNQQVSVLATSSV----DKKVKLWLAPSLE  438 (440)
Q Consensus       389 -~~~~~~-----~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~----Dg~i~vw~~~~~~  438 (440)
                       ...+..     +|...+..++|+||+        ++++....    +..|++||+.+++
T Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~wspdg--------~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          245 TSIQITAPASMLIGDHYLCDVTWATQE--------RISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             CEEEECCCHHHHTSCEEEEEEEEEETT--------EEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             eEEEecCCccCCCCCeEEEEEEEeCCC--------eEEEEEeCCCCCEEEEEEEECCCCc
Confidence             112211     377789999999998        65655432    4479999998876

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=1.2e-14  Score=130.78  Aligned_cols=241  Identities=8%  Similarity=-0.031  Sum_probs=150.2

Q ss_pred             CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578          140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS  219 (440)
Q Consensus       140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (440)
                      .+..++|+|+|++++.+........+++++........-...                .       ........++|+|+
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~----------------~-------~~~~~~~~~spdg~   93 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEG----------------K-------GDNTFGGFISTDER   93 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCS----------------S-------CBCTTTCEECTTSS
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecC----------------C-------CCccccceECCCCC
Confidence            378889999999998887664445677776544311000000                0       00011134589998


Q ss_pred             eEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccE-------------------EEecCCCCeEEEE-----ecCCCEEE
Q 013578          220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM-------------------AAISPNGRFLAAA-----AFTADVKV  275 (440)
Q Consensus       220 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~-----~~dg~i~i  275 (440)
                       .|+.++.++.|++||+.+++.......+......                   +.++|+++.++.+     ..+..|++
T Consensus        94 -~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           94 -AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             -EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             -EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence             7777777778999999988765555433321111                   2467777776654     34567888


Q ss_pred             EEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCC------CcEEEEecCccccccCCCCccccccccc
Q 013578          276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKD------GTLRVWNINVRYHLDEDPKTLKVLPIPL  348 (440)
Q Consensus       276 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~  348 (440)
                      ||+..+.         ...+..+...+..+.|+| ++..|+..+.+      ..|.+||+..+...        .    +
T Consensus       173 ~d~~~g~---------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--------~----l  231 (396)
T 3c5m_A          173 VDIETGE---------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR--------K----I  231 (396)
T ss_dssp             EETTTCC---------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE--------E----S
T ss_pred             EECCCCc---------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee--------E----e
Confidence            8875433         222234667789999999 78877766543      35888887643211        0    0


Q ss_pred             cCCCCCeeeeeeEEeCCCCCEEEEec-C-----CEEEEEEcCCccchhhhhccccCCeEEEEecC-CCCCCCCCcceEEE
Q 013578          349 LDSNGATLQYDRLSLSSDGKILAATH-G-----STLQWLSVETGKVLDTAEKAHEGEITCMAWAP-KTIPMGNQQVSVLA  421 (440)
Q Consensus       349 ~~~~~~~~~v~~~~~s~~g~~l~~~~-~-----~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~~~~~~~~l~  421 (440)
                      .. ......+..++|+|||++|+... +     +.|++||+.+++.....  ... ... +.|+| ++        ++|+
T Consensus       232 ~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~~~-~~~-~~~s~~dg--------~~l~  298 (396)
T 3c5m_A          232 KE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM--VMP-PCS-HLMSNFDG--------SLMV  298 (396)
T ss_dssp             SC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE--ECC-SEE-EEEECSSS--------SEEE
T ss_pred             ec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee--eCC-CCC-CCccCCCC--------ceEE
Confidence            01 11123467899999999776642 2     44999999988754322  111 233 89999 88        6777


Q ss_pred             Eee----------------CCCeEEEEeCCCCC
Q 013578          422 TSS----------------VDKKVKLWLAPSLE  438 (440)
Q Consensus       422 t~~----------------~Dg~i~vw~~~~~~  438 (440)
                      +++                .++.|++|++.+++
T Consensus       299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             EEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             EecCCcceeeccccccccCCCCcEEEEecccCc
Confidence            654                34789999998764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.65  E-value=1.5e-12  Score=112.09  Aligned_cols=286  Identities=8%  Similarity=0.044  Sum_probs=177.9

Q ss_pred             ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      +..+...+.+++++++|+++++...++.|.+||.. +...   ... .......+..+++.+++...++...+   ..+.
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~---~~i~   81 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---EYP-LPTPDAKVMCLTISSDGEVWFTENAA---NKIG   81 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---EEE-CSSTTCCEEEEEECTTSCEEEEETTT---TEEE
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---Eec-CCcccCceeeEEECCCCCEEEeCCCC---CeEE
Confidence            44566789999999999988877778899999987 3311   111 11234678899999998866654332   3455


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee-e
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-V  245 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~  245 (440)
                      .++.......               +.... ..       ..+..+.+.++|. ++++...++.|.+||. +++.... .
T Consensus        82 ~~~~~g~~~~---------------~~~~~-~~-------~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~  136 (299)
T 2z2n_A           82 RITKKGIIKE---------------YTLPN-PD-------SAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYEL  136 (299)
T ss_dssp             EECTTSCEEE---------------EECSS-TT-------CCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred             EECCCCcEEE---------------EeCCC-cC-------CCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecC
Confidence            5543311100               00000 00       0112233456776 6666666788999998 5554322 2


Q ss_pred             eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578          246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV  325 (440)
Q Consensus       246 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i  325 (440)
                      ......+..++++++|+++++...++.|..||. .+.   ..    ...+..+...+.+++++++|.++++...++.|.+
T Consensus       137 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---~~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  208 (299)
T 2z2n_A          137 PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD---IT----EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGR  208 (299)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC---EE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc---EE----EeeCCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence            223456788999999988777766788999986 322   11    1112334456889999999987777667889999


Q ss_pred             EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhccccCCeEEEE
Q 013578          326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEITCMA  404 (440)
Q Consensus       326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~  404 (440)
                      ||. ++...        .+..     ......+..++++++|+++++. .++.|..||. +++........+...+.+++
T Consensus       209 ~~~-~g~~~--------~~~~-----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~  273 (299)
T 2z2n_A          209 ITT-SGEIT--------EFKI-----PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGIC  273 (299)
T ss_dssp             ECT-TCCEE--------EEEC-----SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEE
T ss_pred             ECC-CCcEE--------EEEC-----CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEE
Confidence            998 43211        0100     1122346789999999977776 4789999998 45432221123456799999


Q ss_pred             ecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          405 WAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       405 ~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      + +++        .++++.+ .+.+..++..+.+
T Consensus       274 ~-~~g--------~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          274 F-DGE--------TIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             E-CSS--------CEEEEET-TTEEEEEEEC---
T ss_pred             e-cCC--------CEEEEec-CCcEEEEEcCccc
Confidence            9 886        5555544 5677777776543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.64  E-value=7.5e-13  Score=122.95  Aligned_cols=307  Identities=12%  Similarity=0.080  Sum_probs=178.7

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEc----cCCCeEEEEeecCCcceEEe
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFA----DNATSIVVATHNLSGCSLYM  167 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~----~~~~~l~~~~~~~~~~~~~~  167 (440)
                      ..+.++.|+|||+++++++.|+.|.+||+.........  ..  ..+.....++|+    |+|++++++....  ..+.+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~--~i--~~G~~P~~ia~s~~~~pDGk~l~v~n~~~--~~v~V  270 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--EI--KIGSEARSIETSKMEGWEDKYAIAGAYWP--PQYVI  270 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--EE--ECCSEEEEEEECCSTTCTTTEEEEEEEET--TEEEE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE--EE--ecCCCCceeEEccccCCCCCEEEEEEccC--CeEEE
Confidence            35679999999999999999999999999622222111  11  223457899999    6999999988763  34445


Q ss_pred             eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee--eee
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL--GNV  245 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~  245 (440)
                      ++............      .....+....+...      ....+..++++..+++....+|.|.++|..+.+.+  ..+
T Consensus       271 iD~~t~~~~~~i~~------~~~~~~~~~~~p~~------rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i  338 (567)
T 1qks_A          271 MDGETLEPKKIQST------RGMTYDEQEYHPEP------RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI  338 (567)
T ss_dssp             EETTTCCEEEEEEC------CEECTTTCCEESCC------CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred             EECCCCcEEEEEec------cccccccccccCCC------ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence            55433211100000      00000000000000      01123335666667777788899999998875432  223


Q ss_pred             eCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeee--eeccccceEEEEEcCCCCEE-EEEe-CC
Q 013578          246 DTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQ--LKGHKSAVTWLCFAPNSEQI-ITAS-KD  320 (440)
Q Consensus       246 ~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l-~s~~-~d  320 (440)
                      .. ......+.|+|+|++|+++. .+++|.++|+.+++   ...  .+..  -..|.+.-..+ ++|++..+ +++. .+
T Consensus       339 ~~-~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k---l~~--~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~  411 (567)
T 1qks_A          339 SA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK---LVA--IEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGD  411 (567)
T ss_dssp             EC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE---EEE--EEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSS
T ss_pred             ec-cccccCceECCCCCEEEEEeCCCCeEEEEECCCCc---EEE--EEeccCcCCCCccceee-ECCCCCcEEEeCCCCC
Confidence            22 23456789999999988776 57889999986543   111  1111  12243322222 68875544 4443 46


Q ss_pred             CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--------CCEEEEEEcCCc-----c
Q 013578          321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--------GSTLQWLSVETG-----K  387 (440)
Q Consensus       321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--------~~~i~i~d~~~~-----~  387 (440)
                      ++|.++|..+...........+.+..    ....   -..+..+|++++|.+..        .+.|.++|+.+.     .
T Consensus       412 ~~Vsvid~~~~~~~~~~~kvv~~i~~----~g~g---~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~  484 (567)
T 1qks_A          412 DSVALIGTDPEGHPDNAWKILDSFPA----LGGG---SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD  484 (567)
T ss_dssp             SEEEEEECCTTTCTTTBTSEEEEEEC----SCSC---CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred             CeEEEecCCCCCCccccCEEEEEEec----CCCC---CEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence            89999999863211111111111111    1111   12477899999888754        359999999877     2


Q ss_pred             ch-hhhh-------ccccCCeEEEEecCCCCCCCCCcceEEEEe-e----CCCeEEEEeCCCCC
Q 013578          388 VL-DTAE-------KAHEGEITCMAWAPKTIPMGNQQVSVLATS-S----VDKKVKLWLAPSLE  438 (440)
Q Consensus       388 ~~-~~~~-------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~-~----~Dg~i~vw~~~~~~  438 (440)
                      .. ..+.       ......+..+.|+|+|        +.+..+ .    .++.|.|+|..+++
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--------~~~~~s~~~~~~~~~~i~v~D~~t~~  540 (567)
T 1qks_A          485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDG--------TEVWFSVWNGKDQESALVVVDDKTLE  540 (567)
T ss_dssp             CCEEEECHHHHHTCCSSCCEEEEEEECTTS--------SEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             CCcEEeccccccccCCCCcceEeeeECCCC--------CEEEEEeecCCCCCCcEEEEECCCce
Confidence            11 1111       0124578999999998        444443 2    37999999998865

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=1.7e-13  Score=115.96  Aligned_cols=218  Identities=12%  Similarity=0.070  Sum_probs=144.8

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccc
Q 013578          102 DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQ  181 (440)
Q Consensus       102 dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (440)
                      .+++|++++.|+.|.+||.++++..    .....+....+.++.++|+|+                              
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~----w~~~~~~~~~~~~~~~~pdG~------------------------------   49 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIV----WEYPLEKGWECNSVAATKAGE------------------------------   49 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEE----EEEECCTTCCCCEEEECTTSC------------------------------
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEE----EEeCCCccCCCcCeEECCCCC------------------------------
Confidence            4689999999999999998776532    222222113567777777665                              


Q ss_pred             cCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-CCcccEEEecCC
Q 013578          182 QSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-QLKNNMAAISPN  260 (440)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~  260 (440)
                                                             +++  +.++.|..||. +++.+..+..+ ...+.++.+.++
T Consensus        50 ---------------------------------------ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~d   87 (276)
T 3no2_A           50 ---------------------------------------ILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPD   87 (276)
T ss_dssp             ---------------------------------------EEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTT
T ss_pred             ---------------------------------------EEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCC
Confidence                                                   333  23455888888 78888888764 246778899999


Q ss_pred             CCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578          261 GRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK  339 (440)
Q Consensus       261 ~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  339 (440)
                      |+++++.+. ++.|..+|. .++  .............+......+++.++|+++++...++.|..||.+ ++.+.+...
T Consensus        88 G~~lv~~~~~~~~v~~vd~-~Gk--~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~  163 (276)
T 3no2_A           88 GNALVAWCGHPSTILEVNM-KGE--VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL  163 (276)
T ss_dssp             SCEEEEEESTTEEEEEECT-TSC--EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC
T ss_pred             CCEEEEecCCCCEEEEEeC-CCC--EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC
Confidence            999999887 666665553 121  111111101111233345667889999999999999999999987 544322110


Q ss_pred             ccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhcccc------CCeEEEEecCCCCCC
Q 013578          340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHE------GEITCMAWAPKTIPM  412 (440)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~------~~v~~v~~~~~~~~~  412 (440)
                                  .   .....+...++|.+++++. ++.|..+|..+|+.+.++. .+.      ..+..+...+++   
T Consensus       164 ------------~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~l~~~~~~~~~~~G---  224 (276)
T 3no2_A          164 ------------S---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN-ANDIEGVQLFFVAQLFPLQNG---  224 (276)
T ss_dssp             ------------S---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE-GGGSBSCCCSEEEEEEECTTS---
T ss_pred             ------------C---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec-CCCCCCccccccccceEcCCC---
Confidence                        0   1233577789999888766 5689999999999987763 221      237788888887   


Q ss_pred             CCCcceEEEEe
Q 013578          413 GNQQVSVLATS  423 (440)
Q Consensus       413 ~~~~~~~l~t~  423 (440)
                           .++++.
T Consensus       225 -----~i~v~~  230 (276)
T 3no2_A          225 -----GLYICN  230 (276)
T ss_dssp             -----CEEEEE
T ss_pred             -----CEEEEe
Confidence                 666665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.62  E-value=7.6e-14  Score=135.70  Aligned_cols=260  Identities=13%  Similarity=0.118  Sum_probs=154.2

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCC-----CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           89 GHGDSVTGLCFSSDGKCLATACAD-----GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~d-----g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      +|...+..++|||||++||.++.+     ..|++||+.+++......      ....+..++|+|| +.|+.+..+....
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~------~~~~~~~~~wspD-~~l~~~~~~~~~~  232 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL------KWVKFSGLAWLGN-DALLYSRFAEPKE  232 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE------EEEESCCCEESTT-SEEEEEECCCC--
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC------CCceeccEEEECC-CEEEEEEecCccc
Confidence            344578899999999999987654     469999999876421111      1122467899999 9888876542100


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce--
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL--  241 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--  241 (440)
                                                                            +. .+........|++|++.++..  
T Consensus       233 ------------------------------------------------------~~-~~~~~~~~~~v~~~~lgt~~~~~  257 (741)
T 1yr2_A          233 ------------------------------------------------------GQ-AFQALNYNQTVWLHRLGTPQSAD  257 (741)
T ss_dssp             -------------------------------------------------------------CCCCCEEEEEETTSCGGGC
T ss_pred             ------------------------------------------------------cc-ccccCCCCCEEEEEECCCCchhC
Confidence                                                                  00 011112244588888877652  


Q ss_pred             eeeee--CCCCcccEEEecCCCCeEEEEecCC-----CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578          242 LGNVD--TNQLKNNMAAISPNGRFLAAAAFTA-----DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI  314 (440)
Q Consensus       242 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  314 (440)
                      ...+.  .+...+..+.|+|||++|+..+.++     .|++||+..+..    .  ....+..+...+.... +|+|+.|
T Consensus       258 ~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~----~--~~~~l~~~~~~~~~~~-~~dg~~l  330 (741)
T 1yr2_A          258 QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI----G--PVTALIPDLKAQWDFV-DGVGDQL  330 (741)
T ss_dssp             EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE----C--CCEEEECSSSSCEEEE-EEETTEE
T ss_pred             EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC----c--ccEEecCCCCceEEEE-eccCCEE
Confidence            12222  2222467889999999998887654     789999865410    0  0233444555555553 4889888


Q ss_pred             EEEeCC----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcC-Cccc
Q 013578          315 ITASKD----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVE-TGKV  388 (440)
Q Consensus       315 ~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~-~~~~  388 (440)
                      +..+.+    +.|.+||+.+..      .....    +..  .+...+..++++ ++.++++. .++..++|... +++.
T Consensus       331 ~~~s~~~~~~~~l~~~d~~~~~------~~~~~----l~~--~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~  397 (741)
T 1yr2_A          331 WFVSGDGAPLKKIVRVDLSGST------PRFDT----VVP--ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP  397 (741)
T ss_dssp             EEEECTTCTTCEEEEEECSSSS------CEEEE----EEC--CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE
T ss_pred             EEEECCCCCCCEEEEEeCCCCc------cccEE----Eec--CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc
Confidence            877753    459999987531      00000    011  112235567776 45555554 47766655443 4555


Q ss_pred             hhhhhccccCCeEEEEecCCCCCCCCCcceEEE-Eee---CCCeEEEEeCCCCC
Q 013578          389 LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA-TSS---VDKKVKLWLAPSLE  438 (440)
Q Consensus       389 ~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~---~Dg~i~vw~~~~~~  438 (440)
                      ...+...+.+.|..+.++|++        ..|+ +.+   ..++|++||+.+++
T Consensus       398 ~~~l~~~~~~~v~~~~~s~d~--------~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          398 AGAVSLPGIGSASGLSGRPGD--------RHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEECBCSSSCEEEEEECCBTC--------SCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             eeeccCCCCeEEEEeecCCCC--------CEEEEEEcCCCCCCEEEEEECCCCc
Confidence            554532346778999999986        4343 333   35889999998764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=3.9e-14  Score=124.21  Aligned_cols=185  Identities=11%  Similarity=0.067  Sum_probs=120.8

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      +++++..++.|.+||..+++.......+...+.+++++++|+++++...+    +.|.+||......   .   ......
T Consensus        58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~---~---~~~~~~  131 (333)
T 2dg1_A           58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL---Q---DIIEDL  131 (333)
T ss_dssp             EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC---E---EEECSS
T ss_pred             EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE---E---EEEccC
Confidence            55566677889999998887655443455678999999999988777666    6798998654331   0   011111


Q ss_pred             ccccceEEEEEcCCCCEEEEEeC------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          297 GHKSAVTWLCFAPNSEQIITASK------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                      .+...+.+++++|+|+++++...      .+.|..||..++..        ..+.       ........++|+|+|++|
T Consensus       132 ~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~-------~~~~~~~~i~~~~dg~~l  196 (333)
T 2dg1_A          132 STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV--------TPII-------QNISVANGIALSTDEKVL  196 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE--------EEEE-------EEESSEEEEEECTTSSEE
T ss_pred             ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE--------EEee-------cCCCcccceEECCCCCEE
Confidence            23457899999999987776653      24455555443211        0000       011125679999999866


Q ss_pred             EEe-c-CCEEEEEEcCC-ccchhhh----h---ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          371 AAT-H-GSTLQWLSVET-GKVLDTA----E---KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       371 ~~~-~-~~~i~i~d~~~-~~~~~~~----~---~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ..+ . ++.|++|+..+ +..+..+    .   .++ ..+..+++++++        +++++...++.|.+|+..
T Consensus       197 ~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G--------~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          197 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD--------NLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC--------CEEEEEETTTEEEEECTT
T ss_pred             EEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC--------CEEEEEcCCCEEEEECCC
Confidence            543 3 68999999864 3332211    0   112 467889999998        777777778999999974

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.61  E-value=7.9e-13  Score=114.81  Aligned_cols=252  Identities=13%  Similarity=0.114  Sum_probs=154.0

Q ss_pred             cccccCcceeEEEEccCCCEEEE-------eeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578           86 TLKGHGDSVTGLCFSSDGKCLAT-------ACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH  158 (440)
Q Consensus        86 ~l~~H~~~V~~l~~s~dg~~l~t-------~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  158 (440)
                      .+...-....+++|+++|+++++       +..++.|.+|+..++....... .....+...+..+++++++        
T Consensus        12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~--------   82 (314)
T 1pjx_A           12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDA--------   82 (314)
T ss_dssp             EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSS--------
T ss_pred             hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCC--------
Confidence            34444556789999999988888       6778999999977654211000 0000111334444444441        


Q ss_pred             cCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC
Q 013578          159 NLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT  238 (440)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~  238 (440)
                                                                                 ++ ++++.. ...|.+||.. 
T Consensus        83 -----------------------------------------------------------g~-l~v~~~-~~~l~~~d~~-  100 (314)
T 1pjx_A           83 -----------------------------------------------------------NQ-LFVADM-RLGLLVVQTD-  100 (314)
T ss_dssp             -----------------------------------------------------------SE-EEEEET-TTEEEEEETT-
T ss_pred             -----------------------------------------------------------Cc-EEEEEC-CCCEEEEeCC-
Confidence                                                                       22 333332 3358888877 


Q ss_pred             Cceeee-eeC----CCCcccEEEecCCCCeEEEEecC---------------CCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          239 GKLLGN-VDT----NQLKNNMAAISPNGRFLAAAAFT---------------ADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       239 ~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      ++.... ...    ....+..++++++|+++++...+               +.|..||.. +   .      ...+..+
T Consensus       101 g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g---~------~~~~~~~  170 (314)
T 1pjx_A          101 GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G---Q------MIQVDTA  170 (314)
T ss_dssp             SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S---C------EEEEEEE
T ss_pred             CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C---C------EEEeccC
Confidence            654332 211    12347889999999887776554               345545432 1   1      1112223


Q ss_pred             ccceEEEEEc----CCCCEEEEE-eCCCcEEEEecCc-cccccCCCCccccccccccCCCCCe-eeeeeEEeCCCCCEEE
Q 013578          299 KSAVTWLCFA----PNSEQIITA-SKDGTLRVWNINV-RYHLDEDPKTLKVLPIPLLDSNGAT-LQYDRLSLSSDGKILA  371 (440)
Q Consensus       299 ~~~v~~~~~~----p~~~~l~s~-~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~  371 (440)
                      ......++|+    |+++.|+.+ ..++.|.+||++. +...     ....    ......+. .....++++++|++++
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~-----~~~~----~~~~~~~~~~~p~~i~~d~~G~l~v  241 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE-----NKKV----WGHIPGTHEGGADGMDFDEDNNLLV  241 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE-----EEEE----EEECCCCSSCEEEEEEEBTTCCEEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc-----cceE----EEECCCCCCCCCCceEECCCCCEEE
Confidence            3456889999    999765544 5678999999762 2110     0000    00111111 3356799999999877


Q ss_pred             Ee-cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce-EEEEeeCCCeEEEEeCCC
Q 013578          372 AT-HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS-VLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       372 ~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw~~~~  436 (440)
                      +. .++.|.+||..+++.+..+ ..+...+.+++|++++        + ++++...++.|..|++..
T Consensus       242 ~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg--------~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          242 ANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQT--------KTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTS--------SEEEEEETTTTEEEEEECSS
T ss_pred             EEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCC--------CEEEEEeCCCCeEEEEeCCC
Confidence            75 4789999999888876665 3566789999999997        6 555656678999999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.60  E-value=4.3e-13  Score=116.94  Aligned_cols=238  Identities=12%  Similarity=0.044  Sum_probs=156.2

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE  171 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~  171 (440)
                      .....+.+. +++++++...++.|.+||..+++..     ... .....+..++++++++                    
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~-----~~i-~~~~~p~~i~~~~~g~--------------------   96 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV-----GRI-TGFTSPRYIHFLSDEK--------------------   96 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE-----EEE-ECCSSEEEEEEEETTE--------------------
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE-----EEc-CCCCCCcEEEEeCCCe--------------------
Confidence            446778874 4556666667899999999876531     111 1224456666655441                    


Q ss_pred             cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC--
Q 013578          172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ--  249 (440)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--  249 (440)
                                                                       ++++...++.|.+||..+++....+....  
T Consensus        97 -------------------------------------------------lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~  127 (328)
T 3dsm_A           97 -------------------------------------------------AYVTQIWDYRIFIINPKTYEITGYIECPDMD  127 (328)
T ss_dssp             -------------------------------------------------EEEEEBSCSEEEEEETTTTEEEEEEECTTCC
T ss_pred             -------------------------------------------------EEEEECCCCeEEEEECCCCeEEEEEEcCCcc
Confidence                                                             33444467889999999998877776543  


Q ss_pred             ---CcccEEEecCCCCeEEEEe--cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC----
Q 013578          250 ---LKNNMAAISPNGRFLAAAA--FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD----  320 (440)
Q Consensus       250 ---~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d----  320 (440)
                         .....+++  ++..|+++.  .++.|.++|+.+.+        ....+.. ......++++|+|++++++..+    
T Consensus       128 ~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~--------~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~  196 (328)
T 3dsm_A          128 MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDK--------VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGS  196 (328)
T ss_dssp             TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTE--------EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred             ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCe--------EEEEEEc-CCCccceEEcCCCCEEEEECCCccCC
Confidence               13456777  455555555  48899999986543        2333332 2345688999999977776654    


Q ss_pred             ------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhh-hh
Q 013578          321 ------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDT-AE  393 (440)
Q Consensus       321 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~-~~  393 (440)
                            +.|.++|..+.+...       .+..+    .+  .....++++|+++.|.++.. .|.+||..+++.... +.
T Consensus       197 ~~~~~~~~v~~id~~t~~v~~-------~~~~~----~g--~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~  262 (328)
T 3dsm_A          197 PYGYEAPSLYRIDAETFTVEK-------QFKFK----LG--DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFL  262 (328)
T ss_dssp             SSCBCCCEEEEEETTTTEEEE-------EEECC----TT--CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSB
T ss_pred             ccccCCceEEEEECCCCeEEE-------EEecC----CC--CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeee
Confidence                  789999998654321       11110    01  13567999999998887765 899999999886432 11


Q ss_pred             ccccCCeEEEEecCCCCCCCCCcceEEEEe----eCCCeEEEEeCCCCC
Q 013578          394 KAHEGEITCMAWAPKTIPMGNQQVSVLATS----SVDKKVKLWLAPSLE  438 (440)
Q Consensus       394 ~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~----~~Dg~i~vw~~~~~~  438 (440)
                      ..+......++++|++.       .++++.    ..++.|.+|+.. ++
T Consensus       263 ~~~~~~p~gi~vdp~~g-------~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          263 EFRDTKYYGLTVNPNNG-------EVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             CCCSSCEEEEEECTTTC-------CEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             cCCCCceEEEEEcCCCC-------eEEEEcccccccCCEEEEECCC-CC
Confidence            12246789999999430       566666    678999999987 54

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=6.2e-14  Score=135.38  Aligned_cols=182  Identities=7%  Similarity=-0.006  Sum_probs=117.1

Q ss_pred             eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC-------------EEEEEeEecCCCceeeeee
Q 013578          225 CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD-------------VKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       225 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~~~~~~  291 (440)
                      |+.+..|++||+.+++.+..-.........++|+|||+.|+.++.|..             |++|++..+..    ....
T Consensus       143 G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~----~~~l  218 (695)
T 2bkl_A          143 AADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS----KDTV  218 (695)
T ss_dssp             TCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG----GCEE
T ss_pred             CCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch----hceE
Confidence            445678999999998865111111122267899999999999988776             99999865431    1113


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEEEeCCC----cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIITASKDG----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  367 (440)
                      +.....|...+.++.|+|||++|+..+.++    .|++|+..++.        ...+.    ...   ..+....+ ++|
T Consensus       219 v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--------~~~l~----~~~---~~~~~~~~-~~g  282 (695)
T 2bkl_A          219 VHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--------FRLLV----KGV---GAKYEVHA-WKD  282 (695)
T ss_dssp             EECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--------CEEEE----ECS---SCCEEEEE-ETT
T ss_pred             EEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--------eEEee----cCC---CceEEEEe-cCC
Confidence            444445667889999999999998877665    56666543221        11110    001   11223445 566


Q ss_pred             CEEEEec----CCEEEEEEcCCccc--hhhhhccc-cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          368 KILAATH----GSTLQWLSVETGKV--LDTAEKAH-EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       368 ~~l~~~~----~~~i~i~d~~~~~~--~~~~~~~h-~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      .+++.+.    ++.|.+||+.+++.  ...+...+ ...+..++|+ ++        .++++...|+..+||.++
T Consensus       283 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~--------~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          283 RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG--------HLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT--------EEEEEEEETTEEEEEEEE
T ss_pred             cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC--------EEEEEEEECCEEEEEEEe
Confidence            6444443    47999999988763  23332223 4468889998 44        789999999999888664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.59  E-value=7e-13  Score=113.49  Aligned_cols=203  Identities=13%  Similarity=0.118  Sum_probs=133.0

Q ss_pred             ccCcceeEEEE-ccCCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           89 GHGDSVTGLCF-SSDGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        89 ~H~~~V~~l~~-s~dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      +|...+.++++ .++++++++... ++.|++|+.. +..    .......+...+..++++++++               
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~~----~~~~~~~~~~~~~~i~~~~~g~---------------  133 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQF----VRKFGATILQHPRGVTVDNKGR---------------  133 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCE----EEEECTTTCSCEEEEEECTTSC---------------
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-CcE----EEEecCccCCCceEEEEeCCCC---------------
Confidence            45567899999 577877777643 8899999943 221    1111122223455666665543               


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD  246 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  246 (440)
                                                                            ++++...++.|.+||.. ++.+..+.
T Consensus       134 ------------------------------------------------------l~v~~~~~~~i~~~~~~-g~~~~~~~  158 (286)
T 1q7f_A          134 ------------------------------------------------------IIVVECKVMRVIIFDQN-GNVLHKFG  158 (286)
T ss_dssp             ------------------------------------------------------EEEEETTTTEEEEECTT-SCEEEEEE
T ss_pred             ------------------------------------------------------EEEEECCCCEEEEEcCC-CCEEEEeC
Confidence                                                                  44555556778888854 55555553


Q ss_pred             --CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee--ccccceEEEEEcCCCCEEEEEeCCC-
Q 013578          247 --TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK--GHKSAVTWLCFAPNSEQIITASKDG-  321 (440)
Q Consensus       247 --~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~dg-  321 (440)
                        .+...+..++++++|+++++...++.|++||... .        .+..+.  ++...+.+++++|+|+++++...++ 
T Consensus       159 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~--------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~  229 (286)
T 1q7f_A          159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-Q--------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNF  229 (286)
T ss_dssp             CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-C--------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred             CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-C--------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence              2334578899999999887777889999999632 1        233332  2335789999999999888887776 


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccc
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKV  388 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~  388 (440)
                      .|.+||.... .+       ..+..     ......+..++++|+|+++++..++.|++|+.....+
T Consensus       230 ~i~~~~~~g~-~~-------~~~~~-----~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          230 NLTIFTQDGQ-LI-------SALES-----KVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             EEEEECTTSC-EE-------EEEEE-----SSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCCC
T ss_pred             EEEEECCCCC-EE-------EEEcc-----cCCCCcceeEEECCCCcEEEECCCCeEEEEEcccccc
Confidence            9999996532 11       11110     1111235679999999988887789999999865443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.57  E-value=1.9e-12  Score=120.20  Aligned_cols=277  Identities=12%  Similarity=0.040  Sum_probs=173.9

Q ss_pred             cCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc--ccccccc
Q 013578          101 SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE--KAISTNE  178 (440)
Q Consensus       101 ~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~  178 (440)
                      +.+.++++...+++|.++|..+++..     .. ...+..+..+.|+||++++++++.+   ..+.+++..  ...    
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~-----~~-i~~g~~p~~v~~SpDGr~lyv~~~d---g~V~viD~~~~t~~----  231 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIK-----TV-LDTGYAVHISRLSASGRYLFVIGRD---GKVNMIDLWMKEPT----  231 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEE-----EE-EECSSCEEEEEECTTSCEEEEEETT---SEEEEEETTSSSCC----
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEE-----EE-EeCCCCccceEECCCCCEEEEEcCC---CeEEEEECCCCCCc----
Confidence            45567778888999999999876421     11 1233456799999999999988754   356666542  110    


Q ss_pred             ccccCCCCCCceeecccccccceeEEEeecccccccC----CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC------
Q 013578          179 GKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT----ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN------  248 (440)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------  248 (440)
                                          ....+.....+..+.++    |||+..+++...++.|.++|..+.+.+..+...      
T Consensus       232 --------------------~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~  291 (567)
T 1qks_A          232 --------------------TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE  291 (567)
T ss_dssp             --------------------EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred             --------------------EeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc
Confidence                                00111111223344557    699977777778899999999999988877532      


Q ss_pred             -----CCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCC
Q 013578          249 -----QLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDG  321 (440)
Q Consensus       249 -----~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg  321 (440)
                           ...+..+..++++..+++. ..+|+|.++|.....     .. .+..+ ........+.|+|++++|++++ .++
T Consensus       292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~-----~~-~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn  364 (567)
T 1qks_A          292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN-----NL-KTTEI-SAERFLHDGGLDGSHRYFITAANARN  364 (567)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS-----EE-EEEEE-ECCSSEEEEEECTTSCEEEEEEGGGT
T ss_pred             ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc-----cc-eeeee-eccccccCceECCCCCEEEEEeCCCC
Confidence                 1245677888876655444 456889888864332     00 11222 1234567889999999887665 578


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE-eCCC-CCEEEEec--CCEEEEEEcCC-------ccchh
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS-LSSD-GKILAATH--GSTLQWLSVET-------GKVLD  390 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~-g~~l~~~~--~~~i~i~d~~~-------~~~~~  390 (440)
                      .|.++|+.+++....       +.  ......|..  .... ++|+ +.+.+++.  ++.|.++|..+       .+.+.
T Consensus       365 ~V~ViD~~t~kl~~~-------i~--vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~  433 (567)
T 1qks_A          365 KLVVIDTKEGKLVAI-------ED--TGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD  433 (567)
T ss_dssp             EEEEEETTTTEEEEE-------EE--CSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             eEEEEECCCCcEEEE-------Ee--ccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence            999999997654321       11  100001110  1122 5787 55555553  58999999988       45555


Q ss_pred             hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC-------CCeEEEEeCCCC
Q 013578          391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV-------DKKVKLWLAPSL  437 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-------Dg~i~vw~~~~~  437 (440)
                      .+. .....-..+..+|++        ++|.....       ..+|.|+|+.+.
T Consensus       434 ~i~-~~g~g~~~i~~~p~~--------~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          434 SFP-ALGGGSLFIKTHPNS--------QYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEE-CSCSCCCCEECCTTC--------SEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEe-cCCCCCEEEEeCCCC--------CeEEEecCCCCCcccCceEEEEECCcc
Confidence            553 333333457789998        66666542       358999998865

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.56  E-value=8.1e-13  Score=127.98  Aligned_cols=182  Identities=9%  Similarity=0.028  Sum_probs=119.1

Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC----------------EEEEEeEecCCCceeeeeee
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD----------------VKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~~~  292 (440)
                      ..|++||+.+++.+..... ...+..++|+|||+.|+.++.++.                |++|++..+..    ....+
T Consensus       151 ~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~----~~~~v  225 (710)
T 2xdw_A          151 VTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS----EDILC  225 (710)
T ss_dssp             EEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG----GCEEE
T ss_pred             EEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc----cceEE
Confidence            3799999999887653322 223678999999999999988766                89999854431    10122


Q ss_pred             eeeeccccceEEEEEcCCCCEEEEEeC-----CCcEEEEecCc------cccccCCCCccccccccccCCCCCeeeeeeE
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQIITASK-----DGTLRVWNINV------RYHLDEDPKTLKVLPIPLLDSNGATLQYDRL  361 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  361 (440)
                      .....|...+.++.|+|||++|+..+.     +..|++||+.+      +..      ....+    ....   ..+. .
T Consensus       226 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~l----~~~~---~~~~-~  291 (710)
T 2xdw_A          226 AEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL------KWVKL----IDNF---EGEY-D  291 (710)
T ss_dssp             ECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC------CCEEE----ECSS---SSCE-E
T ss_pred             eccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc------ceEEe----eCCC---CcEE-E
Confidence            233335566889999999999887764     56899999875      210      01111    1111   1111 2


Q ss_pred             EeCCCCCEEEEec-----CCEEEEEEcCCccc--hhhhhccccC--CeEEEEecCCCCCCCCCcceEEEEeeCCCe--EE
Q 013578          362 SLSSDGKILAATH-----GSTLQWLSVETGKV--LDTAEKAHEG--EITCMAWAPKTIPMGNQQVSVLATSSVDKK--VK  430 (440)
Q Consensus       362 ~~s~~g~~l~~~~-----~~~i~i~d~~~~~~--~~~~~~~h~~--~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~--i~  430 (440)
                      .|+++|..|+..+     ...|.+||+.+++.  ...+. .|..  .+..++|++++        .++++...|+.  |.
T Consensus       292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~--------~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV-PEHEKDVLEWVACVRSN--------FLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCEEEEEEEETTT--------EEEEEEEETTEEEEE
T ss_pred             EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc-CCCCCCeEEEEEEEcCC--------EEEEEEEECCEEEEE
Confidence            5888988776532     24799999988752  23332 3443  68889999776        78889988985  55


Q ss_pred             EEeCCCCC
Q 013578          431 LWLAPSLE  438 (440)
Q Consensus       431 vw~~~~~~  438 (440)
                      +|++.+++
T Consensus       363 ~~~~~~g~  370 (710)
T 2xdw_A          363 LHDLATGA  370 (710)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCC
Confidence            56664543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=7.1e-13  Score=112.11  Aligned_cols=187  Identities=12%  Similarity=0.149  Sum_probs=139.2

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCC-CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc-
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQ-LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH-  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h-  298 (440)
                      ++++++.++.|.+||.++++.+.++..+. ..+.++.++|+|++|+  +.++.|+.||. .++        .+..+..+ 
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~--------~~W~~~~~~   75 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR--------ELWNIAAPA   75 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC--------EEEEEECCT
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC--------EEEEEcCCC
Confidence            89999999999999999999999988765 4688999999999888  44677988887 443        44455543 


Q ss_pred             ccceEEEEEcCCCCEEEEEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC
Q 013578          299 KSAVTWLCFAPNSEQIITASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS  376 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~  376 (440)
                      ...+.++.+.|+|+++++.+. ++.|..+|.. ++.+.+       +.... ....+......+++.++|.++++.. ++
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~-------~~~~~-~~~~~~~~~~~v~~~~~G~~lv~~~~~~  146 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSK-------TEFET-GIERPHAQFRQINKNKKGNYLVPLFATS  146 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEE-------EEECC-SCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred             CccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEE-------EeccC-CCCcccccccCceECCCCCEEEEecCCC
Confidence            346889999999999999887 7777777753 322211       11000 0011112244577899999998875 79


Q ss_pred             EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .|..||.+ |+.+..+.  ....+.++...+++        .++++++.+++|..+|..+++
T Consensus       147 ~v~~~d~~-G~~~w~~~--~~~~~~~~~~~~~g--------~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          147 EVREIAPN-GQLLNSVK--LSGTPFSSAFLDNG--------DCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             EEEEECTT-SCEEEEEE--CSSCCCEEEECTTS--------CEEEECBTTSEEEEECTTTCC
T ss_pred             EEEEECCC-CCEEEEEE--CCCCccceeEcCCC--------CEEEEeCCCCeEEEEeCcCCc
Confidence            99999998 99888874  23456778888887        789988888899999988765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.54  E-value=2.8e-11  Score=106.94  Aligned_cols=293  Identities=10%  Similarity=-0.005  Sum_probs=167.6

Q ss_pred             EccCCCEEEEeeC--CC---cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec-------CCcceEE
Q 013578           99 FSSDGKCLATACA--DG---VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN-------LSGCSLY  166 (440)
Q Consensus        99 ~s~dg~~l~t~s~--dg---~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~-------~~~~~~~  166 (440)
                      ..|++++++....  .+   +|.++|..+++.     ... .+.+... .++++||+++++++...       .....+.
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~-----~~~-i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-----LGH-VNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeE-----EEE-ecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence            3467766666543  22   789999887642     221 2222334 99999999999988631       0123455


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC-CceEEEEeCCCCceeee-
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE-GTDISIWHGKTGKLLGN-  244 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~-  244 (440)
                      +++.............    .           ..+ ......+....++|||+.++++... ++.|.++| .+++.+.. 
T Consensus       101 viD~~t~~~~~~i~~~----~-----------~~~-~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~  163 (373)
T 2mad_H          101 VFDPVTFLPIADIELP----D-----------APR-FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL  163 (373)
T ss_pred             EEECCCCcEEEEEECC----C-----------ccc-cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE
Confidence            5554332111000000    0           000 0000123345568999955544433 57899999 99988877 


Q ss_pred             eeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce-EEEEEcCCCCEEEEEeCCCc
Q 013578          245 VDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV-TWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       245 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~p~~~~l~s~~~dg~  322 (440)
                      +....    ++.+.|++ +.+++.+.||++.++|. .++...  .......+ ....++ ....+.+++..++..+.++.
T Consensus       164 i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~--~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~  235 (373)
T 2mad_H          164 LSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG--AGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGK  235 (373)
T ss_pred             cCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE--EEeccccc-cCCcceeecceeEecCCEEEEEcCCce
Confidence            65432    34455554 45566778999999998 543100  00000001 112222 23456666655544456789


Q ss_pred             EEEEecCccccccCCCCccccccccc---cCCCCCeeeeeeEEeCCCCCEEEEec-----------CCEEEEEEcCCccc
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPL---LDSNGATLQYDRLSLSSDGKILAATH-----------GSTLQWLSVETGKV  388 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~-----------~~~i~i~d~~~~~~  388 (440)
                      +.+.|+......     ....+....   ............++++|+++.+.+..           ++.|.++|..+++.
T Consensus       236 v~vid~~~~~~~-----v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v  310 (373)
T 2mad_H          236 ILQADISAAGAT-----NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT  310 (373)
T ss_pred             EEEEeccCCcce-----EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence            999998643211     000010000   00000111133478999988766642           25899999999999


Q ss_pred             hhhhhccccCCeEEEEecCCCCCCCCCcce-EEEEee-CCCeEEEEeCCCCC
Q 013578          389 LDTAEKAHEGEITCMAWAPKTIPMGNQQVS-VLATSS-VDKKVKLWLAPSLE  438 (440)
Q Consensus       389 ~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~-~l~t~~-~Dg~i~vw~~~~~~  438 (440)
                      +..+.  -.....+++|+||+        + +++++. .++.|.+||+.+++
T Consensus       311 v~~i~--~g~~p~~i~~s~Dg--------~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          311 SSQIS--LGHDVDAISVAQDG--------GPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EEEEE--CCCCcCeEEECCCC--------CeEEEEEcCCCCeEEEEECCCCC
Confidence            88885  33468999999998        6 677776 58999999998876

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.52  E-value=7.7e-13  Score=115.54  Aligned_cols=207  Identities=14%  Similarity=0.090  Sum_probs=130.5

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec------CCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN------LPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~------~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ++-.....++++|+|+++++...++.|++|+.+..... ...+...      ..+-..+..++++|+             
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~-~~~~~~~~~~g~~~~~~~~P~~ia~~~~-------------  153 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGP-LLILGRSMQPGSDQNHFCQPTDVAVEPS-------------  153 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCC-SEEESBTTBCCCSTTCCSSEEEEEECTT-------------
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEE-EEEecccCCCCCCccccCCCcEEEEeCC-------------
Confidence            45567899999999999999888999999997643211 1111000      111123445555541             


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-CCceEEEEeCCCCce
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-EGTDISIWHGKTGKL  241 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~  241 (440)
                                                                            ++. ++++.+ .++.|++|+ .+++.
T Consensus       154 ------------------------------------------------------~g~-lyv~d~~~~~~I~~~~-~~g~~  177 (329)
T 3fvz_A          154 ------------------------------------------------------TGA-VFVSDGYCNSRIVQFS-PSGKF  177 (329)
T ss_dssp             ------------------------------------------------------TCC-EEEEECSSCCEEEEEC-TTSCE
T ss_pred             ------------------------------------------------------CCe-EEEEeCCCCCeEEEEc-CCCCE
Confidence                                                                  222 455554 467788888 45666


Q ss_pred             eeeeeCC----------CCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee--eccccceEEEEEc
Q 013578          242 LGNVDTN----------QLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL--KGHKSAVTWLCFA  308 (440)
Q Consensus       242 ~~~~~~~----------~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~  308 (440)
                      +..+...          ......++++|+ ++++++...++.|++||...++        .+..+  ..+...+.+++|+
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--------~~~~~~~~~~~~~~~~~~~~  249 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--------FVREIKHASFGRNVFAISYI  249 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--------EEEEECCTTTTTCEEEEEEE
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc--------EEEEEeccccCCCcceeeec
Confidence            6555321          123678999998 7777777778899999976333        33333  3456678899999


Q ss_pred             CCCCEEEEE-------eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEE
Q 013578          309 PNSEQIITA-------SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQW  380 (440)
Q Consensus       309 p~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i  380 (440)
                      | +..+++.       ..+..|++||+.++..+....           ....+......++++|+|.++++.. ++.|++
T Consensus       250 p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~-----------~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~  317 (329)
T 3fvz_A          250 P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK-----------PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWK  317 (329)
T ss_dssp             T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC-----------CSSSCCSSEEEEEECTTSEEEEEESSSCCEEE
T ss_pred             C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc-----------CCCCccCCeeEEEECCCCCEEEEECCCCEEEE
Confidence            9 4333333       345589999988765432110           0112333467899999997666654 789999


Q ss_pred             EEcCC
Q 013578          381 LSVET  385 (440)
Q Consensus       381 ~d~~~  385 (440)
                      |+...
T Consensus       318 ~~~~~  322 (329)
T 3fvz_A          318 FTLTE  322 (329)
T ss_dssp             EEEEE
T ss_pred             EeCCc
Confidence            99754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.52  E-value=1.1e-11  Score=107.87  Aligned_cols=300  Identities=11%  Similarity=0.000  Sum_probs=174.0

Q ss_pred             EEEccCCCEEEEeeC-----CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec-------CCcce
Q 013578           97 LCFSSDGKCLATACA-----DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN-------LSGCS  164 (440)
Q Consensus        97 l~~s~dg~~l~t~s~-----dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~-------~~~~~  164 (440)
                      ....|+++.++....     ++.|.+.|..+.+..  ..+.  .+  ... .++++||+++++++...       .....
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~--~~I~--vG--~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~  110 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI--GMID--GG--FLP-NPVVADDGSFIAHASTVFSRIARGERTDY  110 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE--EEEE--EC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE--EEEE--CC--CCC-cEEECCCCCEEEEEcccccccccCCCCCE
Confidence            445688888777754     678999998876422  1111  12  223 49999999999887631       01245


Q ss_pred             EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-CCceEEEEeCCCCceee
Q 013578          165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-EGTDISIWHGKTGKLLG  243 (440)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~  243 (440)
                      +.+++..............             +   ........+..+.++|||+.++++.. .++.|.++|+.+++.+.
T Consensus       111 VsviD~~t~~v~~~I~v~~-------------g---~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~  174 (386)
T 3sjl_D          111 VEVFDPVTLLPTADIELPD-------------A---PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR  174 (386)
T ss_dssp             EEEECTTTCCEEEEEEETT-------------C---CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             EEEEECCCCeEEEEEECCC-------------c---cccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence            6666665432111100000             0   00000113445667999995555544 37889999999999998


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE-EEEEc-CCCCEEEEEeCCC
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT-WLCFA-PNSEQIITASKDG  321 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~-p~~~~l~s~~~dg  321 (440)
                      ++.....   ...+....+.+++.+.||++.+.++.....  .... ....+.....++. ...|. ++|++++ .+.+|
T Consensus       175 tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~--v~~~-~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g  247 (386)
T 3sjl_D          175 MLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT--PEIT-HTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTG  247 (386)
T ss_dssp             EEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSC--CEEE-ECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTS
T ss_pred             EEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCe--EEEe-ecceeccccccccccceeEcCCCcEEE-EeCCC
Confidence            8865331   223333455677777888888888754221  1000 0011111122222 24564 6776555 55589


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-----------CCEEEEEEcCCccchh
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-----------GSTLQWLSVETGKVLD  390 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------~~~i~i~d~~~~~~~~  390 (440)
                      +|.+.|+.+......  .....+........-.......++++++++.+.+..           .+.|.++|+.+++.+.
T Consensus       248 ~V~v~d~~~~~~~v~--~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~  325 (386)
T 3sjl_D          248 KIHQIDLSSGDAKFL--PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA  325 (386)
T ss_dssp             EEEEEECTTSSCEEC--CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred             EEEEEECCCCcceee--cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence            999999975431100  000000000000000112233588899988766642           2579999999999999


Q ss_pred             hhhccccCCeEEEEecCCCCCCCCCcce-EEEE-eeCCCeEEEEeCCCCC
Q 013578          391 TAEKAHEGEITCMAWAPKTIPMGNQQVS-VLAT-SSVDKKVKLWLAPSLE  438 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~-~l~t-~~~Dg~i~vw~~~~~~  438 (440)
                      .+..++  .++.|++++|+        + +|++ ...++.|.++|..+++
T Consensus       326 ~i~vg~--~~~~lavs~D~--------~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          326 KFEMGH--EIDSINVSQDE--------KPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             EEEEEE--EECEEEECSSS--------SCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEECCC--CcceEEECCCC--------CeEEEEEcCCCCeEEEEECCCCc
Confidence            886443  68999999997        4 5555 5569999999998876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=9.5e-12  Score=111.55  Aligned_cols=255  Identities=12%  Similarity=0.104  Sum_probs=150.8

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE  171 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~  171 (440)
                      .....|+|+++|+++++...++.|++||..++...     ..... ..... ++|+++++.++++..+.           
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----~~~~~-~~~~~-ia~~~~g~~l~~~d~~~-----------  192 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----TVHPG-FKGGK-PAVTKDKQRVYSIGWEG-----------  192 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----EEEET-CCBCB-CEECTTSSEEEEEBSST-----------
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----Eeecc-CCCCc-eeEecCCCcEEEEecCC-----------
Confidence            46889999999998888878899999998765321     11111 22233 77777766544332210           


Q ss_pred             cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee----eC
Q 013578          172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV----DT  247 (440)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~~  247 (440)
                                                                              ...|.+|+...+.....+    ..
T Consensus       193 --------------------------------------------------------~~~I~~~d~~~~~~~~~~g~~~~~  216 (409)
T 3hrp_A          193 --------------------------------------------------------THTVYVYMKASGWAPTRIGQLGST  216 (409)
T ss_dssp             --------------------------------------------------------TCEEEEEEGGGTTCEEEEEECCTT
T ss_pred             --------------------------------------------------------CceEEEEEcCCCceeEEeeeccch
Confidence                                                                    115666665544332222    21


Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce-E-EEEEcCC-CCEEEEEeCCCcEE
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV-T-WLCFAPN-SEQIITASKDGTLR  324 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v-~-~~~~~p~-~~~l~s~~~dg~i~  324 (440)
                      ....+.+++++|++..|+++..++.|+.||.....   ...... ....++...- . .++|+|+ +.++++-..++.|+
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~---~~~~~~-~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~  292 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE---VTLIKQ-LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVY  292 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC---EEEEEE-CCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC---EEEEec-ccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEE
Confidence            34556789999965566667778889999875332   000000 0012222222 3 9999995 56666666788999


Q ss_pred             EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEcCCccchhhhhccc------
Q 013578          325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVETGKVLDTAEKAH------  396 (440)
Q Consensus       325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~~~~~~~~~~~~~h------  396 (440)
                      .|+.................. .-......-.....++++++|.++++-  .++.|+.|+..+++.....  ++      
T Consensus       293 ~~~~~g~~~~~~g~~~~~g~~-dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~--g~~~~~g~  369 (409)
T 3hrp_A          293 KITPDGECEWFCGSATQKTVQ-DGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA--GQVDVASQ  369 (409)
T ss_dssp             EECTTCCEEEEEECTTCCSCB-CEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE--ECTTCBSC
T ss_pred             EEecCCCEEEEEeCCCCCCcC-CCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe--CCCCCCCc
Confidence            998764311000000000000 000000001235679999999966664  4689999998777643221  22      


Q ss_pred             ---------cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          397 ---------EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       397 ---------~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                               -.....+++++++        .++++-..+++|+.++++
T Consensus       370 ~~g~~~~~~~~~P~giavd~~g--------~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          370 IDGTPLEATFNYPYDICYDGEG--------GYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             CCBSTTTCCBSSEEEEEECSSS--------EEEEEESTTCEEEEEEEC
T ss_pred             CCCChhceEeCCceEEEEcCCC--------CEEEEECCCCeEEEEEeC
Confidence                     2468999999998        888888888999988763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.50  E-value=6.6e-11  Score=101.79  Aligned_cols=241  Identities=10%  Similarity=0.053  Sum_probs=154.9

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY  168 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~  168 (440)
                      .....+.+++++++|++.++...++.|.+|+.. +...   ... .......+..+++.+++.                 
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---~~~-~~~~~~~~~~i~~~~~g~-----------------   74 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---EFE-VPTPDAKVMCLIVSSLGD-----------------   74 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---EEE-CSSTTCCEEEEEECTTSC-----------------
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---EEE-CCCCCCcceeEEECCCCC-----------------
Confidence            455688999999999988887778999999876 3211   111 111123445555554443                 


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee-eeeC
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG-NVDT  247 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~  247 (440)
                                                                          ++++...++.|..||.. ++... .+..
T Consensus        75 ----------------------------------------------------l~v~~~~~~~v~~~d~~-g~~~~~~~~~  101 (300)
T 2qc5_A           75 ----------------------------------------------------IWFTENGANKIGKLSKK-GGFTEYPLPQ  101 (300)
T ss_dssp             ----------------------------------------------------EEEEETTTTEEEEECTT-SCEEEEECSS
T ss_pred             ----------------------------------------------------EEEEecCCCeEEEECCC-CCeEEecCCC
Confidence                                                                34444445668888876 54421 1222


Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      ....+..++++++|+++++...++.|..||.. +.   ..    ...+......+.+++++++++++++...++.|..||
T Consensus       102 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~---~~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A          102 PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT---IY----EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC---EE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             CCCCCccceECCCCCEEEEccCCCeEEEECCC-CC---EE----EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence            33567889999999887777667888888864 22   11    111222445689999999999666666678899998


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~  406 (440)
                      .. +...        .+.     .......+..++++++|.+.++.. .+.|.+|+. +++........+...+.+++++
T Consensus       174 ~~-g~~~--------~~~-----~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d  238 (300)
T 2qc5_A          174 NT-GKLE--------EYP-----LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG  238 (300)
T ss_dssp             TT-CCEE--------EEE-----CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             CC-CcEE--------Eee-----CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence            73 2211        010     011123466899999998777765 678999998 5554332112345678999999


Q ss_pred             CCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          407 PKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      +++        .++++...++.|..|+..
T Consensus       239 ~~g--------~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          239 KNS--------EIWFTEWGANQIGRITND  259 (300)
T ss_dssp             STT--------CEEEEETTTTEEEEECTT
T ss_pred             CCC--------CEEEeccCCCeEEEECCC
Confidence            998        666666667889998873

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.49  E-value=4.1e-12  Score=111.99  Aligned_cols=223  Identities=14%  Similarity=0.162  Sum_probs=129.6

Q ss_pred             cceeEEEEccCCCEEEEeeCC---Cc--EEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC-----
Q 013578           92 DSVTGLCFSSDGKCLATACAD---GV--IRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS-----  161 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~d---g~--v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~-----  161 (440)
                      ..+..++|||||++|+.++.+   +.  |.+|++.+++.  .....   .. . +..++|+|+++.|+.++.+..     
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~--~~l~~---~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~  131 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS--KKILE---AK-N-IRSLEWNEDSRKLLIVGFKRREDEDF  131 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE--EEEEE---ES-E-EEEEEECTTSSEEEEEEECCCC----
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce--EEEEc---CC-C-ccceeECCCCCEEEEEEccCCCcCCc
Confidence            568899999999999988754   34  66667765432  11221   11 3 889999999999998875310     


Q ss_pred             -------------------cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578          162 -------------------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII  222 (440)
Q Consensus       162 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  222 (440)
                                         ...+++++.                        ........+... ......++|+|  ++
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~------------------------~~~~~~~~l~~~-~~~~~~~spdg--~~  184 (347)
T 2gop_A          132 IFEDDVPAWFDDLGFFDGEKTTFWIFDT------------------------ESEEVIEEFEKP-RFSSGIWHRDK--IV  184 (347)
T ss_dssp             -----CCCC---------CEEEEEEEET------------------------TTTEEEEEEEEE-TTCEEEEETTE--EE
T ss_pred             EEEcccceeecCcccccCccceEEEEEC------------------------CCCeEEeeecCC-CcccccCCCCe--EE
Confidence                               122233322                        221110111111 33445567888  55


Q ss_pred             EEeeCC---------ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC--------CEEEEEeEecCCCc
Q 013578          223 ASCSEG---------TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA--------DVKVWEIVYSKDGL  285 (440)
Q Consensus       223 ~s~~~d---------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~i~d~~~~~~~~  285 (440)
                      +++..+         ..|.++|  +++. ..+..+ ..+.  .++|+|++|+.++.++        .|.+||  .+.   
T Consensus       185 ~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~---  253 (347)
T 2gop_A          185 VNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE---  253 (347)
T ss_dssp             EEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC---
T ss_pred             EEEecccccccccccccEEEeC--CCce-EEeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCc---
Confidence            555443         2455556  4543 333333 3333  3499999998887543        466666  221   


Q ss_pred             eeeeeeeeeeeccccceEE-EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578          286 VKAVTSVMQLKGHKSAVTW-LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS  364 (440)
Q Consensus       286 ~~~~~~~~~~~~h~~~v~~-~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  364 (440)
                           .......|...+.. +.|+ ++ ++++++.++.++|| +.++..       ..     ..   .+...+..++|+
T Consensus       254 -----~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-------~~-----~~---~~~~~v~~~~~s  310 (347)
T 2gop_A          254 -----VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-------KP-----IA---KGRHWIMGFDVD  310 (347)
T ss_dssp             -----EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-------EE-----EE---CSSSEEEEEEES
T ss_pred             -----eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-------EE-----Ee---cCCCeEEeeeee
Confidence                 22223455677886 9999 88 88999999999999 873211       00     11   113457889999


Q ss_pred             CCCCEEEE-ecCCEE-EEEEcC
Q 013578          365 SDGKILAA-THGSTL-QWLSVE  384 (440)
Q Consensus       365 ~~g~~l~~-~~~~~i-~i~d~~  384 (440)
                      |  .++++ ..++.. .+|...
T Consensus       311 ~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          311 E--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             S--SEEEEEECSSSCCEEEEES
T ss_pred             C--cEEEEEcCCCChHHheEeC
Confidence            9  55554 444432 555554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.49  E-value=2.8e-11  Score=103.95  Aligned_cols=225  Identities=12%  Similarity=0.116  Sum_probs=139.9

Q ss_pred             ccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578           89 GHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM  167 (440)
Q Consensus        89 ~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~  167 (440)
                      .+..---+..|+|+ +.++++...++.|..||..++...   ..    .....+.+++++++++.               
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~----~~~~~~~~i~~~~dG~l---------------   67 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---RV----TMDAPVSSVALRQSGGY---------------   67 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EE----ECSSCEEEEEEBTTSSE---------------
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---EE----eCCCceEEEEECCCCCE---------------
Confidence            34445668899995 556667677899999998865421   11    12355677777776652               


Q ss_pred             eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT  247 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  247 (440)
                                                                            +++ . +..|.+||..+++.......
T Consensus        68 ------------------------------------------------------~v~-~-~~~l~~~d~~~g~~~~~~~~   91 (297)
T 3g4e_A           68 ------------------------------------------------------VAT-I-GTKFCALNWKEQSAVVLATV   91 (297)
T ss_dssp             ------------------------------------------------------EEE-E-TTEEEEEETTTTEEEEEEEC
T ss_pred             ------------------------------------------------------EEE-E-CCeEEEEECCCCcEEEEEec
Confidence                                                                  222 2 23477777776654322221


Q ss_pred             ----CCCcccEEEecCCCCeEEEEecC---------CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578          248 ----NQLKNNMAAISPNGRFLAAAAFT---------ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI  314 (440)
Q Consensus       248 ----~~~~v~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  314 (440)
                          ....+..++++|+|+++++...+         ....+|.+....  .      ...+..+......++|+|+++.|
T Consensus        92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~------~~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH--H------VKKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS--C------EEEEEEEESBEEEEEECTTSCEE
T ss_pred             CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC--C------EEEEeeccccccceEEcCCCCEE
Confidence                12346779999999976654332         345677664322  1      11122233456899999999876


Q ss_pred             E-EEeCCCcEEEEecC--ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchh
Q 013578          315 I-TASKDGTLRVWNIN--VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLD  390 (440)
Q Consensus       315 ~-s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~  390 (440)
                      + +.+.++.|.+||+.  ++...     ..+.    .............++++++|.+.++.. ++.|..||..+++.+.
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~-----~~~~----~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQIS-----NRRS----VYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEE-----EEEE----EEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred             EEecCCCCcEEEEeccCCCCccc-----CcEE----EEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence            4 55567899999974  22110     0000    001111122356799999998777654 6889999999999888


Q ss_pred             hhhccccCCeEEEEec-CCC
Q 013578          391 TAEKAHEGEITCMAWA-PKT  409 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~~-~~~  409 (440)
                      .+. .+...+++++|. |++
T Consensus       235 ~i~-~p~~~~t~~~f~g~d~  253 (297)
T 3g4e_A          235 TVK-LPVDKTTSCCFGGKNY  253 (297)
T ss_dssp             EEE-CSSSBEEEEEEESGGG
T ss_pred             EEE-CCCCCceEEEEeCCCC
Confidence            773 566789999998 775

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.48  E-value=1.2e-11  Score=106.20  Aligned_cols=228  Identities=11%  Similarity=0.045  Sum_probs=138.7

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe-cCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI-NLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ...+..+...+.+++++++|+++++...++.|.+||..++....  .... .......+..++++|+|+.+++....+..
T Consensus        61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~--~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~  138 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES--IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGID  138 (296)
T ss_dssp             EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE--EECEETTEECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred             eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE--EeeccCCCCCCCCCCEEECCCCCEEEECCccccc
Confidence            34455677889999999999988888778899999987654321  1111 11112456788999888766543210000


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      .   .+...                                             .    .......+.|..++.. ++. 
T Consensus       139 ~---~~~~~---------------------------------------------~----~~~~~~~~~l~~~~~~-g~~-  164 (296)
T 3e5z_A          139 K---PEEGY---------------------------------------------G----GEMELPGRWVFRLAPD-GTL-  164 (296)
T ss_dssp             C---GGGSS---------------------------------------------C----CCCCSSSCEEEEECTT-SCE-
T ss_pred             c---ccccc---------------------------------------------c----ccccCCCcEEEEECCC-CCE-
Confidence            0   00000                                             0    0000012345555554 333 


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce-eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV-KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      ..+..+......++|+|+++.|++.+.++.|.+|++...  +.. ..   ...+..+...+.+++++++|+++++.  ++
T Consensus       165 ~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~--g~~~~~---~~~~~~~~~~p~~i~~d~~G~l~v~~--~~  237 (296)
T 3e5z_A          165 SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNAR--GETEYQ---GVHFTVEPGKTDGLRVDAGGLIWASA--GD  237 (296)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSS--SCEEEE---EEEECCSSSCCCSEEEBTTSCEEEEE--TT
T ss_pred             EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCC--CcCcCC---CeEeeCCCCCCCeEEECCCCCEEEEc--CC
Confidence            333334455678999999999977777889999998621  111 11   11123355667889999999866655  78


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe-CCCCCEEEEecCCEEEEEEcCCccchh
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL-SSDGKILAATHGSTLQWLSVETGKVLD  390 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~~~i~i~d~~~~~~~~  390 (440)
                      .|.+||... ..+       ..+.       .+.. +.+++| +|+++.|.+++.+.+.-++..+.++.+
T Consensus       238 ~v~~~~~~g-~~~-------~~~~-------~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          238 GVHVLTPDG-DEL-------GRVL-------TPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEH  291 (296)
T ss_dssp             EEEEECTTS-CEE-------EEEE-------CSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBCCC
T ss_pred             eEEEECCCC-CEE-------EEEE-------CCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccccc
Confidence            999999862 211       1111       1112 667889 689998888877788888887776654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.47  E-value=5.6e-12  Score=121.46  Aligned_cols=257  Identities=13%  Similarity=0.112  Sum_probs=153.3

Q ss_pred             cccCcceeEEEEccCCCEEEE-----eeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           88 KGHGDSVTGLCFSSDGKCLAT-----ACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t-----~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ++|...+..++|||||++||.     |+.+.+|++||+.+++.......      ......++|+ |++.|+.+..+.. 
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~------~~k~~~~~Ws-Dg~~l~y~~~~~~-  196 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK------DVKFSGISWL-GNEGFFYSSYDKP-  196 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE------EEESCCCEEE-TTTEEEEEESSCC-
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC------CceeccEEEe-CCCEEEEEEecCc-
Confidence            357778999999999999984     33346799999998763211110      0124577899 9998888765511 


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce-
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL-  241 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-  241 (440)
                                                                            ++. .+........|++|++.++.. 
T Consensus       197 ------------------------------------------------------~~~-~~~~~~~~~~v~~~~lgt~~~~  221 (693)
T 3iuj_A          197 ------------------------------------------------------DGS-ELSARTDQHKVYFHRLGTAQED  221 (693)
T ss_dssp             ------------------------------------------------------C--------CCCCEEEEEETTSCGGG
T ss_pred             ------------------------------------------------------ccc-cccccCCCcEEEEEECCCCccc
Confidence                                                                  000 111112345688999877642 


Q ss_pred             ---eeeeeC-CCCcccEEEecCCCCeEEEEec----CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE
Q 013578          242 ---LGNVDT-NQLKNNMAAISPNGRFLAAAAF----TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ  313 (440)
Q Consensus       242 ---~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  313 (440)
                         +..... +......+.++|||++|+....    +..|+++|+..+..       ....+..+....... ++++|..
T Consensus       222 ~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~-------~~~~l~~~~~~~~~~-~~~~g~~  293 (693)
T 3iuj_A          222 DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA-------PLLTVQGDLDADVSL-VDNKGST  293 (693)
T ss_dssp             CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-------CCEEEECSSSSCEEE-EEEETTE
T ss_pred             ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-------ceEEEeCCCCceEEE-EeccCCE
Confidence               222222 2334567899999998876543    24788888755431       233444555555555 5666665


Q ss_pred             EEE-EeCC---CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CC--EEEEEEcCC
Q 013578          314 IIT-ASKD---GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GS--TLQWLSVET  385 (440)
Q Consensus       314 l~s-~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~--~i~i~d~~~  385 (440)
                      |+. ...+   +.|..+|+.++...     ..+.+    .. .  ...+.  .|+++++.|+...  ++  .|++|++..
T Consensus       294 l~~~t~~~~~~~~l~~~d~~~~~~~-----~~~~l----~~-~--~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          294 LYLLTNRDAPNRRLVTVDAANPGPA-----HWRDL----IP-E--RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             EEEEECTTCTTCEEEEEETTSCCGG-----GCEEE----EC-C--CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             EEEEECCCCCCCEEEEEeCCCCCcc-----ccEEE----ec-C--CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence            554 4333   57888998754220     01111    11 1  11122  8899999887653  44  788999875


Q ss_pred             ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC----CeEEEEeCCCCC
Q 013578          386 GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD----KKVKLWLAPSLE  438 (440)
Q Consensus       386 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D----g~i~vw~~~~~~  438 (440)
                      +.. ..+...+.+.+..+.+++++        ..|+....+    +++..||+.+++
T Consensus       360 ~~~-~~l~~p~~~~~~~~~~~~d~--------~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          360 KRV-REVALPGLGSVSGFNGKHDD--------PALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             CEE-EEECCSSSSEEEECCCCTTC--------SCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             Cee-EEeecCCCceEEeeecCCCC--------CEEEEEecCCCCCCEEEEEECCCCe
Confidence            543 33322455678888888876        444433333    789999987764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.47  E-value=1.3e-11  Score=104.60  Aligned_cols=202  Identities=9%  Similarity=-0.013  Sum_probs=129.4

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      +...+.+++++++|+++++.. ++.|.+|+.......     .........+..+++.++++                  
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-----~~~~~~~~~p~~i~~~~~g~------------------  120 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-----VLPFDGLNYPEGLAVDTQGA------------------  120 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-----ECCCCSCSSEEEEEECTTCC------------------
T ss_pred             CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-----eeecCCcCCCcceEECCCCC------------------
Confidence            345788999999999766665 889999997654321     11111113445555555443                  


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ  249 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  249 (440)
                                                                         ++++...++.|.+|+..+...........
T Consensus       121 ---------------------------------------------------l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  149 (270)
T 1rwi_B          121 ---------------------------------------------------VYVADRGNNRVVKLAAGSKTQTVLPFTGL  149 (270)
T ss_dssp             ---------------------------------------------------EEEEEGGGTEEEEECTTCCSCEECCCCSC
T ss_pred             ---------------------------------------------------EEEEECCCCEEEEEECCCceeEeeccccC
Confidence                                                               44444445667777655444332222223


Q ss_pred             CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578          250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                      ..+..++++++|+++++...++.|.+||.....        .......+...+.+++++++|.++++...++.|.+||..
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN--------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC--------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCc--------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence            456889999999977776677899999864332        111112233568899999999777777778899999986


Q ss_pred             ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccc
Q 013578          330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKV  388 (440)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~  388 (440)
                      ......        .      ...+...+..++++++|+++++.. ++.|++|+....+.
T Consensus       222 ~~~~~~--------~------~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          222 STTSTV--------L------PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CSCCEE--------C------CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCccee--------e------ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            532110        0      011123467899999999776654 89999999876654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.46  E-value=1e-12  Score=114.93  Aligned_cols=130  Identities=9%  Similarity=-0.029  Sum_probs=92.3

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      .|+++ .++.|++||+.+.........+...+..+.+.+.  .+++++.||.|.+||+..+.        ..    .+..
T Consensus        99 ~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~--------~~----~~~~  163 (388)
T 1xip_A           99 QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS--------TK----QLAQ  163 (388)
T ss_dssp             EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC--------EE----EEEE
T ss_pred             EEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc--------cc----cccC
Confidence            55555 6788999999877666566666667777666544  38889999999999986443        11    1456


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccc--cCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL--LDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                      .|+|++|+|+|  ++.|..||++++|+......-.     ...++.+.  ....++...|.++.|.+++.++++
T Consensus       164 ~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~-----k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          164 NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEK-----QFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEE-----EEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccc-----cceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            89999999999  6789999999999887543200     11111111  111235678999999999999987

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.46  E-value=8.2e-11  Score=103.92  Aligned_cols=251  Identities=10%  Similarity=0.033  Sum_probs=148.7

Q ss_pred             EEEEccCCCEEEEee----------CCCcEEEEecCCCCCcceeeEEec----CCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           96 GLCFSSDGKCLATAC----------ADGVIRVHKLDDASSKSFKFLRIN----LPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        96 ~l~~s~dg~~l~t~s----------~dg~v~vW~~~~~~~~~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      .++++|||++|+.+.          .++.|.+||..+.+..  ..+...    .........++|+|||++++++.... 
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~--~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~-  146 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI--ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-  146 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE--EEEECCCccccccCCCccceEECCCCCEEEEEecCC-
Confidence            999999999999886          3678999999865422  111111    00123466899999999999986431 


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                      ...+.+++ ........     .++                     ...+..+.+++...+++.+.||.+.++|. +++.
T Consensus       147 ~~~v~viD-~t~~~~~~-----~i~---------------------~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~  198 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQ-----LLS---------------------SPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA  198 (373)
T ss_pred             CCeEEEEE-CCCCEEeE-----EcC---------------------CCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence            23455555 33311100     000                     00011224555556777788999999999 8876


Q ss_pred             eeeee-----CCCCcc-cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee----eeeccccceEEEEEcCCC
Q 013578          242 LGNVD-----TNQLKN-NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM----QLKGHKSAVTWLCFAPNS  311 (440)
Q Consensus       242 ~~~~~-----~~~~~v-~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~h~~~v~~~~~~p~~  311 (440)
                      +....     ....++ ....+.+++..++..+..+.+.+.|+..........+....    ...-.......+.++|++
T Consensus       199 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~  278 (373)
T 2mad_H          199 AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS  278 (373)
T ss_pred             EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCC
Confidence            63322     111111 22355666665555557888999888543210000000000    000011224457899999


Q ss_pred             CEEEEEeC----------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec--CCEE
Q 013578          312 EQIITASK----------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH--GSTL  378 (440)
Q Consensus       312 ~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~~~i  378 (440)
                      +.++....          ++.|.++|+.+.+.+..       ++.     .   .....++|+|||+ +++++.  ++.|
T Consensus       279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~-------i~~-----g---~~p~~i~~s~Dg~~~l~v~~~~~~~V  343 (373)
T 2mad_H          279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ-------ISL-----G---HDVDAISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE-------EEC-----C---CCcCeEEECCCCCeEEEEEcCCCCeE
Confidence            88877653          35799999987654321       111     0   1245799999999 666654  7999


Q ss_pred             EEEEcCCccchhhh
Q 013578          379 QWLSVETGKVLDTA  392 (440)
Q Consensus       379 ~i~d~~~~~~~~~~  392 (440)
                      .++|..+++.+..+
T Consensus       344 ~ViD~~t~~vv~~i  357 (373)
T 2mad_H          344 HIYDAGAGDQDQST  357 (373)
T ss_pred             EEEECCCCCEEeee
Confidence            99999999988773

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.45  E-value=5.7e-11  Score=105.47  Aligned_cols=295  Identities=9%  Similarity=0.017  Sum_probs=171.4

Q ss_pred             cCCCEEEEeeC-C----CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec-------CCcceEEee
Q 013578          101 SDGKCLATACA-D----GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN-------LSGCSLYMY  168 (440)
Q Consensus       101 ~dg~~l~t~s~-d----g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~-------~~~~~~~~~  168 (440)
                      +++++++.... +    +.|.+.|..+.+..    .....+  ... .++++||+++++++...       .....+.++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv----~~I~vG--~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsvi  154 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL----GMTDGG--FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVF  154 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEE----EEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEE----EEEECC--CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEE
Confidence            36665555543 2    68999999876432    111112  334 89999999999988631       012456666


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC-CceEEEEeCCCCceeeeeeC
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE-GTDISIWHGKTGKLLGNVDT  247 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~  247 (440)
                      +...............                ........+..+.+++||+.++++... ++.|.+.|+.+++.+..+..
T Consensus       155 D~~t~~vv~~I~v~g~----------------~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          155 DPVTFLPIADIELPDA----------------PRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             CTTTCCEEEEEEETTC----------------CCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCcEEEEEECCCc----------------cccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            6554321111000000                000001224556779999955554433 68899999999999888875


Q ss_pred             CCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce-EEEEEcCCCCEEEEEeCCCcEEE
Q 013578          248 NQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV-TWLCFAPNSEQIITASKDGTLRV  325 (440)
Q Consensus       248 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~p~~~~l~s~~~dg~i~i  325 (440)
                      ...    ....|++ ..+++.+.||++.+.++..++   .... ....+.....++ ..+.|.+++..++..+..+.|.+
T Consensus       219 ~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~---v~~~-~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~V  290 (426)
T 3c75_H          219 PDC----YHIFPASPTVFYMNCRDGSLARVDFADGE---TKVT-NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQ  290 (426)
T ss_dssp             CSE----EEEEEEETTEEEEEETTSSEEEEECCTTC---CEEE-ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEE
T ss_pred             CCc----eeeccCCCcEEEEEcCCCCEEEEECCCCc---EEEE-eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEE
Confidence            332    2333433 455666678887777762222   0000 001111111222 23567899888777778899999


Q ss_pred             EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-----------CCEEEEEEcCCccchhhhhc
Q 013578          326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-----------GSTLQWLSVETGKVLDTAEK  394 (440)
Q Consensus       326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------~~~i~i~d~~~~~~~~~~~~  394 (440)
                      .|+..........  ....................++++|+++.+.+..           ++.|.++|..+.+.+..+..
T Consensus       291 iD~~~~~~~v~~~--~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v  368 (426)
T 3c75_H          291 ADLTAEGATFRAP--IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL  368 (426)
T ss_dssp             EEECSSCEEECCC--EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             EeccCCceEEeee--eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence            9986432110000  0000000000000011122478999988666542           25799999999999998853


Q ss_pred             cccCCeEEEEecCCCCCCCCCcce-EEEEee-CCCeEEEEeCCCCC
Q 013578          395 AHEGEITCMAWAPKTIPMGNQQVS-VLATSS-VDKKVKLWLAPSLE  438 (440)
Q Consensus       395 ~h~~~v~~v~~~~~~~~~~~~~~~-~l~t~~-~Dg~i~vw~~~~~~  438 (440)
                      +  .....++|+||+        + +++++. .++.|.|+|+.+++
T Consensus       369 g--~~P~gia~spDg--------~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          369 G--HEIDSINVSQDA--------EPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             E--EEECEEEECCSS--------SCEEEEEETTTTEEEEEETTTCC
T ss_pred             C--CCcCeEEEccCC--------CEEEEEEcCCCCeEEEEECCCCC
Confidence            3  358999999998        6 777777 59999999998876

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.45  E-value=1.4e-12  Score=114.15  Aligned_cols=161  Identities=7%  Similarity=0.010  Sum_probs=115.8

Q ss_pred             ccCCCCCeEEEEeeCCceEEEEeCCCCc-----------eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEec
Q 013578          213 YGTADGSTIIASCSEGTDISIWHGKTGK-----------LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS  281 (440)
Q Consensus       213 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  281 (440)
                      ..++... ++++|+.++ +.+|++...+           ...... ... |+.++|  ++++|+++ .++.|++||++..
T Consensus        44 ais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl  116 (388)
T 1xip_A           44 DISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL  116 (388)
T ss_dssp             EEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST
T ss_pred             EEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh
Confidence            3355666 788888886 7779865332           112233 344 999999  99999999 8899999998665


Q ss_pred             CCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE
Q 013578          282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL  361 (440)
Q Consensus       282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  361 (440)
                      .        .......|...+.++.+.+.  .+++++.||.|.+||+..+....                  ....|+++
T Consensus       117 ~--------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~------------------~~~~Vs~v  168 (388)
T 1xip_A          117 S--------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ------------------LAQNVTSF  168 (388)
T ss_dssp             T--------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE------------------EEESEEEE
T ss_pred             h--------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc------------------ccCCceEE
Confidence            4        22234456677888777654  38889999999999998553210                  23458999


Q ss_pred             EeCCCCCEEEEecCCEEEEEEcCCccc--hhhh------h--ccccCCeEEEEecCCC
Q 013578          362 SLSSDGKILAATHGSTLQWLSVETGKV--LDTA------E--KAHEGEITCMAWAPKT  409 (440)
Q Consensus       362 ~~s~~g~~l~~~~~~~i~i~d~~~~~~--~~~~------~--~~h~~~v~~v~~~~~~  409 (440)
                      +|||+| +.++..||.+++|+...++.  ...+      .  .+|...|.+|.|.+++
T Consensus       169 ~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          169 DVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             EECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             EEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence            999999 45556699999998887774  3333      1  1477889999999987

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=1.2e-11  Score=108.55  Aligned_cols=188  Identities=10%  Similarity=0.031  Sum_probs=106.7

Q ss_pred             CceEEEEeCCCCceeeeeeCC------CCcccEEEecCCCCeEEEE-e---cCCCEEEEEeEecCCCceee------e-e
Q 013578          228 GTDISIWHGKTGKLLGNVDTN------QLKNNMAAISPNGRFLAAA-A---FTADVKVWEIVYSKDGLVKA------V-T  290 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~-~---~dg~i~i~d~~~~~~~~~~~------~-~  290 (440)
                      +..|.+||+.+++.+..+...      ...+..+++++++..++++ .   .++.|.+||+..++......      . .
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            456888999888876666532      2345789999865555444 3   57889999975432100000      0 0


Q ss_pred             eeeeeec--------------cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc-ccccCCCCCe
Q 013578          291 SVMQLKG--------------HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP-IPLLDSNGAT  355 (440)
Q Consensus       291 ~~~~~~~--------------h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  355 (440)
                      ......+              ....+..|+|+|+++.|+.+..++. ++|.+................. ....   ++.
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~---g~~  247 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERY---SEK  247 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEE---EEC
T ss_pred             cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEec---ccC
Confidence            0000000              0123688999999998888877663 5555442211100000000000 0000   111


Q ss_pred             eeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC
Q 013578          356 LQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK  427 (440)
Q Consensus       356 ~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg  427 (440)
                      .....++++++|.++++.. ++.|.+||..+++........+...+.+++|.+++        .++++.+..+
T Consensus       248 g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g--------~l~v~~~~~~  312 (343)
T 2qe8_A          248 PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG--------YLYFDCNQLH  312 (343)
T ss_dssp             CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS--------CEEEEECCGG
T ss_pred             CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC--------cEEEEeCccc
Confidence            1245699999999877764 78999999866664332211234568999999987        6777766443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=1.1e-11  Score=120.69  Aligned_cols=179  Identities=13%  Similarity=0.077  Sum_probs=112.1

Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC--------------EEEEEeEecCCCceeeeeeeee
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD--------------VKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--------------i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      ..|++||+.+++.+... .+...+..++|+|| +.|+.++.++.              |++|++.++..    ....+..
T Consensus       189 ~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----~~~lv~~  262 (741)
T 1yr2_A          189 RTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS----ADQPVFA  262 (741)
T ss_dssp             EEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG----GCEEEEC
T ss_pred             EEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch----hCEEEec
Confidence            45999999998875432 12223457899999 99998887654              77777643321    0112333


Q ss_pred             eeccccceEEEEEcCCCCEEEEEeCCC-----cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE
Q 013578          295 LKGHKSAVTWLCFAPNSEQIITASKDG-----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI  369 (440)
Q Consensus       295 ~~~h~~~v~~~~~~p~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  369 (440)
                      ...+...+.++.|+|||++|+..+.++     .|++||+.++..     .....+    .....   .+... ++|+|+.
T Consensus       263 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-----~~~~~l----~~~~~---~~~~~-~~~dg~~  329 (741)
T 1yr2_A          263 TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-----GPVTAL----IPDLK---AQWDF-VDGVGDQ  329 (741)
T ss_dssp             CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-----CCCEEE----ECSSS---SCEEE-EEEETTE
T ss_pred             cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-----cccEEe----cCCCC---ceEEE-EeccCCE
Confidence            333444688999999999988777544     799999875410     001111    11111   11122 3488887


Q ss_pred             EEEec-----CCEEEEEEcCCcc-chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          370 LAATH-----GSTLQWLSVETGK-VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       370 l~~~~-----~~~i~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      |+...     ++.|.+||+.++. ....+...+...+..++|.. +        .++++...|+..+||.++
T Consensus       330 l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~-~--------~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          330 LWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAG-N--------RLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEB-T--------EEEEEEEETTEEEEEEEE
T ss_pred             EEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEEC-C--------EEEEEEEECCEEEEEEEe
Confidence            76543     3579999998752 33333234555677888884 3        688999999988888654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.41  E-value=6e-11  Score=102.35  Aligned_cols=239  Identities=10%  Similarity=0.045  Sum_probs=140.7

Q ss_pred             ccccccccCcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      .+..+..+.....+..|+|+|+ +++++..++.|..|+.. +..   ....   .....+..++++++|+.+        
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~---~~~~---~~~~~~~gl~~d~dG~l~--------  100 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV---DVLL---DATAFTNGNAVDAQQRLV--------  100 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE---EEEE---ESCSCEEEEEECTTSCEE--------
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE---EEEe---CCCCccceeeECCCCCEE--------
Confidence            3455666667788999999998 66677788999999873 321   1111   123456677777766532        


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                                                                                   ++...++.|.+|+.. ++.
T Consensus       101 -------------------------------------------------------------v~~~~~~~v~~~~~~-g~~  118 (305)
T 3dr2_A          101 -------------------------------------------------------------HCEHGRRAITRSDAD-GQA  118 (305)
T ss_dssp             -------------------------------------------------------------EEETTTTEEEEECTT-SCE
T ss_pred             -------------------------------------------------------------EEECCCCEEEEECCC-CCE
Confidence                                                                         222223345555553 332


Q ss_pred             eeeee---C-CCCcccEEEecCCCCeEEE----Eec-------------CCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          242 LGNVD---T-NQLKNNMAAISPNGRFLAA----AAF-------------TADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       242 ~~~~~---~-~~~~v~~~~~s~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      .....   . ....+..++++++|+++++    |..             .+.|+.||...++         ...+. ...
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~---------~~~~~-~~~  188 (305)
T 3dr2_A          119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP---------LQRMA-DLD  188 (305)
T ss_dssp             EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC---------CEEEE-EES
T ss_pred             EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc---------EEEEe-cCC
Confidence            11111   0 1123567899999998876    332             1334444432222         11111 334


Q ss_pred             ceEEEEEcCCCCEEEEEeCC------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578          301 AVTWLCFAPNSEQIITASKD------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH  374 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  374 (440)
                      ....++|+|+++.|+.+...      +.|.+|++.... +..    ...+    ...  .......++++++|++.++. 
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~----~~~~----~~~--~~~~pdgi~~d~~G~lwv~~-  256 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHD----RRHF----ASV--PDGLPDGFCVDRGGWLWSSS-  256 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEE----EEEE----ECC--SSSCCCSEEECTTSCEEECC-
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccC----CeEE----EEC--CCCCCCeEEECCCCCEEEec-
Confidence            56889999999988777654      689999987432 100    0000    000  01123468999999966555 


Q ss_pred             CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEE
Q 013578          375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL  431 (440)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~v  431 (440)
                      .+.|.+|+. +++.+..+. .+. .+.+++|.+++        +.|..++.++..++
T Consensus       257 ~~gv~~~~~-~g~~~~~~~-~~~-~~~~~~f~~d~--------~~L~it~~~~l~~~  302 (305)
T 3dr2_A          257 GTGVCVFDS-DGQLLGHIP-TPG-TASNCTFDQAQ--------QRLFITGGPCLWML  302 (305)
T ss_dssp             SSEEEEECT-TSCEEEEEE-CSS-CCCEEEECTTS--------CEEEEEETTEEEEE
T ss_pred             CCcEEEECC-CCCEEEEEE-CCC-ceeEEEEeCCC--------CEEEEEcCCeEEEE
Confidence            456999998 566666653 233 58999999887        66776666654433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.40  E-value=2.2e-11  Score=106.04  Aligned_cols=265  Identities=12%  Similarity=0.082  Sum_probs=153.5

Q ss_pred             EEEEccCCCEEEEee----------CCCcEEEEecCCCCCcceeeEEecC----CCCCCCceEEEccCCCeEEEEeecCC
Q 013578           96 GLCFSSDGKCLATAC----------ADGVIRVHKLDDASSKSFKFLRINL----PPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        96 ~l~~s~dg~~l~t~s----------~dg~v~vW~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      .++++|||++|+.++          .++.|.+||..+.+..  ..+....    ..+.....++|+|||++++++.... 
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~--~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~-  158 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT--ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-  158 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE--EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS-
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE--EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC-
Confidence            499999999888775          3678999999886532  1222111    1124678899999999998876421 


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cc
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GK  240 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~  240 (440)
                      ...+.+++............                           ..+....|.+...+++.+.||.+.+.++.+ ++
T Consensus       159 ~~~VsVID~~t~~vv~tI~v---------------------------~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~  211 (386)
T 3sjl_D          159 APAVGVVDLEGKAFKRMLDV---------------------------PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT  211 (386)
T ss_dssp             SCEEEEEETTTTEEEEEEEC---------------------------CSEEEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred             CCeEEEEECCCCcEEEEEEC---------------------------CCcceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence            24566666544321111000                           000011233333566777788888888875 55


Q ss_pred             eeeeeeCC----CCccc-EEEe-cCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee--e-ec-cccceEEEEEcCC
Q 013578          241 LLGNVDTN----QLKNN-MAAI-SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ--L-KG-HKSAVTWLCFAPN  310 (440)
Q Consensus       241 ~~~~~~~~----~~~v~-~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~-~~-h~~~v~~~~~~p~  310 (440)
                      ........    ..++. ...| .++|++++ .+.+|+|++.|+..........+.....  . .+ ..+....++++|+
T Consensus       212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~  290 (386)
T 3sjl_D          212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA  290 (386)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred             EEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC
Confidence            43211111    11221 1355 36776555 5568999999975432100000000000  0 00 1233445778999


Q ss_pred             CCEEEEEeC----------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec--CCE
Q 013578          311 SEQIITASK----------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH--GST  377 (440)
Q Consensus       311 ~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~~~  377 (440)
                      ++.++....          ..+|.+.|+.+.+.+..       +..        ...+..+++++|++ +|+++.  ++.
T Consensus       291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~-------i~v--------g~~~~~lavs~D~~~~ly~tn~~~~~  355 (386)
T 3sjl_D          291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK-------FEM--------GHEIDSINVSQDEKPLLYALSTGDKT  355 (386)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE-------EEE--------EEEECEEEECSSSSCEEEEEETTTTE
T ss_pred             CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE-------EEC--------CCCcceEEECCCCCeEEEEEcCCCCe
Confidence            988877643          24799999987754421       111        12466899999997 666543  799


Q ss_pred             EEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578          378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                      |.++|..+++.+.++.  ..+.-+.|.+++|
T Consensus       356 VsViD~~t~k~~~~i~--~~~~p~~l~~s~d  384 (386)
T 3sjl_D          356 LYIHDAESGEELRSVN--QLGHGPQVITTAD  384 (386)
T ss_dssp             EEEEETTTCCEEEEEC--CCCSSCCEEEECC
T ss_pred             EEEEECCCCcEEEEec--CCCCCceeEECCc
Confidence            9999999999988874  3344555555554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.39  E-value=2.5e-10  Score=98.07  Aligned_cols=237  Identities=9%  Similarity=0.068  Sum_probs=149.1

Q ss_pred             CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      ..+.++++.++++..++...+   ..+..++........               .... ..       ..+..+...++|
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~---~~v~~~d~~~~~~~~---------------~~~~-~~-------~~~~~i~~~~~g   68 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKA---NMISCINLDGKITEY---------------PLPT-PD-------AKVMCLTISSDG   68 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTT---TEEEEECTTCCEEEE---------------ECSS-TT-------CCEEEEEECTTS
T ss_pred             CCccceEECCCCCEEEEecCC---CcEEEEcCCCCeEEe---------------cCCc-cc-------CceeeEEECCCC
Confidence            568899999998866654322   345555543111000               0000 00       112223345777


Q ss_pred             CeEEEEeeCCceEEEEeCCCCceeeeee--CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          219 STIIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      . ++++...++.|..||.. ++. ..+.  .....+..++++++|+++++...++.|..||. .+.   .    ......
T Consensus        69 ~-l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~---~----~~~~~~  137 (299)
T 2z2n_A           69 E-VWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK---I----REYELP  137 (299)
T ss_dssp             C-EEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC---E----EEEECS
T ss_pred             C-EEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC---E----EEecCC
Confidence            6 66666667889999976 433 2232  23456788999999988877777888999986 222   1    111222


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578          297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G  375 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~  375 (440)
                      .+...+.+++++++|..+++...++.|..||. ++....        +..     ......+..++++++|.++++.. +
T Consensus       138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--------~~~-----~~~~~~~~~i~~~~~g~l~v~~~~~  203 (299)
T 2z2n_A          138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE--------FKI-----PTPASGPVGITKGNDDALWFVEIIG  203 (299)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE--------EEC-----SSTTCCEEEEEECTTSSEEEEETTT
T ss_pred             CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE--------eeC-----CCCCCcceeEEECCCCCEEEEccCC
Confidence            34456899999999987777767789999998 432210        000     01122356899999999777654 7


Q ss_pred             CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      +.|.+||. +++........+...+.++++++++        .++++...++.|.+|+..
T Consensus       204 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g--------~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          204 NKIGRITT-SGEITEFKIPTPNARPHAITAGAGI--------DLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT--------CEEEEETTTTEEEEEETT
T ss_pred             ceEEEECC-CCcEEEEECCCCCCCceeEEECCCC--------CEEEeccCCceEEEECCC
Confidence            89999999 6664332112345679999999998        666666577889999873

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.39  E-value=6.1e-10  Score=96.86  Aligned_cols=220  Identities=15%  Similarity=0.181  Sum_probs=133.0

Q ss_pred             ceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578           93 SVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE  171 (440)
Q Consensus        93 ~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~  171 (440)
                      -..+..|+|++ .++++...++.|..|+..++...   ..  .  ....+.+++|+++++.                   
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~--~--~~~~v~~i~~~~dg~l-------------------  103 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT---VH--A--LPFMGSALAKISDSKQ-------------------  103 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE---EE--E--CSSCEEEEEEEETTEE-------------------
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE---EE--E--CCCcceEEEEeCCCeE-------------------
Confidence            35678999974 55666667889999998765321   11  1  1245677777766542                   


Q ss_pred             cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC----
Q 013578          172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT----  247 (440)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----  247 (440)
                                                                        +++ +.++ |.+||..+++.......    
T Consensus       104 --------------------------------------------------~v~-~~~g-l~~~d~~~g~~~~~~~~~~~~  131 (326)
T 2ghs_A          104 --------------------------------------------------LIA-SDDG-LFLRDTATGVLTLHAELESDL  131 (326)
T ss_dssp             --------------------------------------------------EEE-ETTE-EEEEETTTCCEEEEECSSTTC
T ss_pred             --------------------------------------------------EEE-ECCC-EEEEECCCCcEEEEeeCCCCC
Confidence                                                              222 2333 77788776664322221    


Q ss_pred             CCCcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE-eCCCc
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA-SKDGT  322 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-~~dg~  322 (440)
                      ....+..++++|+|+++++...+    +...||.+. ..  .      ...+..+......++|+|+++.|+.+ +.++.
T Consensus       132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g--~------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG--K------VTKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT--E------EEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC--c------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            12346789999999876654322    345666655 21  1      11122233456789999999876554 45789


Q ss_pred             EEEEecC--ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCC
Q 013578          323 LRVWNIN--VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGE  399 (440)
Q Consensus       323 i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~  399 (440)
                      |.+||+.  ++..+..    .+.+    ............++++++|.+.++.. ++.|.+|+. +++.+..+ ..+...
T Consensus       203 I~~~d~~~~~Gl~~~~----~~~~----~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i-~~~~~~  272 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGK----AEVF----IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY-EVPGKQ  272 (326)
T ss_dssp             EEEEEBCTTTCCBSSC----CEEE----EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE-ECSCSB
T ss_pred             EEEEEcccccCCcccC----ceEE----EECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE-ECCCCC
Confidence            9999986  3301100    0000    00011122346799999998777654 689999998 57666655 345667


Q ss_pred             eEEEEec-CCC
Q 013578          400 ITCMAWA-PKT  409 (440)
Q Consensus       400 v~~v~~~-~~~  409 (440)
                      +++++|. +++
T Consensus       273 ~~~~af~g~d~  283 (326)
T 2ghs_A          273 TTCPAFIGPDA  283 (326)
T ss_dssp             EEEEEEESTTS
T ss_pred             cEEEEEecCCC
Confidence            9999998 775

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.39  E-value=5.4e-10  Score=96.05  Aligned_cols=238  Identities=10%  Similarity=0.032  Sum_probs=147.3

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      +...+.+++++++|+++++...++.|..||.. +...   ... .......+..+++.+++.                  
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~---~~~-~~~~~~~~~~i~~~~~g~------------------  116 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT---EYP-LPQPDSGPYGITEGLNGD------------------  116 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---EEE-CSSTTCCEEEEEECSTTC------------------
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE---Eec-CCCCCCCCccceECCCCC------------------
Confidence            44678999999999988877778889999876 3211   111 111223445555554443                  


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee-eeeCC
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG-NVDTN  248 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~  248 (440)
                                                                         ++++...++.|..||.. ++... .+...
T Consensus       117 ---------------------------------------------------l~v~~~~~~~i~~~~~~-g~~~~~~~~~~  144 (300)
T 2qc5_A          117 ---------------------------------------------------IWFTQLNGDRIGKLTAD-GTIYEYDLPNK  144 (300)
T ss_dssp             ---------------------------------------------------EEEEETTTTEEEEECTT-SCEEEEECSST
T ss_pred             ---------------------------------------------------EEEEccCCCeEEEECCC-CCEEEccCCCC
Confidence                                                               34444445567777766 54432 12223


Q ss_pred             CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578          249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI  328 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~  328 (440)
                      ...+..++++++|+++++...++.|..||. .+.   ..    ......+...+.+++++++|.++++....+.|.+||.
T Consensus       145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~---~~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          145 GSYPAFITLGSDNALWFTENQNNSIGRITN-TGK---LE----EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC---EE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             CCCceeEEECCCCCEEEEecCCCeEEEECC-CCc---EE----EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence            445788999999996666655778888886 221   11    1122234456889999999987776666778999997


Q ss_pred             CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecC
Q 013578          329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP  407 (440)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~  407 (440)
                      . +...        ....     ......+..++++++|++.++.. ++.|..|+. +++............+.++++.+
T Consensus       217 ~-g~~~--------~~~~-----~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~  281 (300)
T 2qc5_A          217 T-GEIS--------EYDI-----PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGK  281 (300)
T ss_dssp             T-CCEE--------EEEC-----SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECT
T ss_pred             C-CcEE--------EEEC-----CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCC
Confidence            3 2111        0000     01123366899999999777664 689999998 45433221122345688999999


Q ss_pred             CCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          408 KTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       408 ~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ++        .++++.. . .|..++..
T Consensus       282 ~g--------~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          282 DG--------SVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             TS--------CEEEECS-S-EEEEEEEC
T ss_pred             CC--------CEEEEcc-C-ceEEeCCC
Confidence            97        6555554 4 67666653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.37  E-value=2.9e-11  Score=105.33  Aligned_cols=185  Identities=10%  Similarity=-0.027  Sum_probs=126.7

Q ss_pred             CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      ..++++...++.|.+||..+++.+..+.. ......++++++++.+++...++.|.+||..+.+        ....+...
T Consensus        54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~--------~~~~i~~g  124 (328)
T 3dsm_A           54 GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE--------ITGYIECP  124 (328)
T ss_dssp             TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE--------EEEEEECT
T ss_pred             CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe--------EEEEEEcC
Confidence            33666667788999999999999888864 3457889999998544444378999999975443        22222222


Q ss_pred             c-----cceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          299 K-----SAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       299 ~-----~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                      .     .....+++ .++..+++.. .++.|.++|++++.....       +..     .   .....++++|+|+++++
T Consensus       125 ~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~-------i~~-----g---~~p~~i~~~~dG~l~v~  188 (328)
T 3dsm_A          125 DMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE-------LTI-----G---IQPTSLVMDKYNKMWTI  188 (328)
T ss_dssp             TCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE-------EEC-----S---SCBCCCEECTTSEEEEE
T ss_pred             CccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE-------EEc-----C---CCccceEEcCCCCEEEE
Confidence            1     14567777 3444444443 488999999987654321       110     0   11346899999998777


Q ss_pred             ecC-----------CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          373 THG-----------STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       373 ~~~-----------~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +.+           +.|.++|..+++....+..........++|+|++        ..|..+..  .|.+||+.+++
T Consensus       189 ~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~--------~~lyv~~~--~v~~~d~~t~~  255 (328)
T 3dsm_A          189 TDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR--------DTLYWINN--DIWRMPVEADR  255 (328)
T ss_dssp             BCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS--------CEEEEESS--SEEEEETTCSS
T ss_pred             ECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC--------CEEEEEcc--EEEEEECCCCc
Confidence            642           6899999999987766532223478999999987        66666554  89999998765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.32  E-value=1.9e-10  Score=102.18  Aligned_cols=252  Identities=12%  Similarity=0.070  Sum_probs=150.4

Q ss_pred             EEEEccCCCEEEEee----------CCCcEEEEecCCCCCcceeeEEec-CC---CCCCCceEEEccCCCeEEEEeecCC
Q 013578           96 GLCFSSDGKCLATAC----------ADGVIRVHKLDDASSKSFKFLRIN-LP---PGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        96 ~l~~s~dg~~l~t~s----------~dg~v~vW~~~~~~~~~~~~~~~~-~~---~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      .++++|||++|+.+.          .++.|.++|..+.+..  ..+... ..   .......++|+||+++++++.... 
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv--~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~-  198 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI--ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP-  198 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE--EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS-
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE--EEEECCCccccccCCCcceEEEcCCCCEEEEEecCC-
Confidence            899999999888876          4678999999876532  112211 00   124567899999999999886431 


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                      ...+.+.+............                           ..+....|++...+++.+.||.+.+.+..+++.
T Consensus       199 ~~~VsVID~~t~kvv~~I~v---------------------------~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v  251 (426)
T 3c75_H          199 APAVGVVDLEGKTFDRMLDV---------------------------PDCYHIFPASPTVFYMNCRDGSLARVDFADGET  251 (426)
T ss_dssp             SCEEEEEETTTTEEEEEEEC---------------------------CSEEEEEEEETTEEEEEETTSSEEEEECCTTCC
T ss_pred             CCeEEEEECCCCeEEEEEEc---------------------------CCceeeccCCCcEEEEEcCCCCEEEEECCCCcE
Confidence            23455555544321110000                           000111233433666677788888888765654


Q ss_pred             eee----eeCCCCcc-cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee----eeeccccceEEEEEcCCCC
Q 013578          242 LGN----VDTNQLKN-NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM----QLKGHKSAVTWLCFAPNSE  312 (440)
Q Consensus       242 ~~~----~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~h~~~v~~~~~~p~~~  312 (440)
                      ...    +.....++ ..+.+.+++..++..+..+.+.+.|+..........+....    ...........++++|++.
T Consensus       252 ~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~  331 (426)
T 3c75_H          252 KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD  331 (426)
T ss_dssp             EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred             EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence            422    22222221 23567899888888888899999997533200000000000    0000111222368999988


Q ss_pred             EEEEEeC----------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec--CCEEE
Q 013578          313 QIITASK----------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH--GSTLQ  379 (440)
Q Consensus       313 ~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~~~i~  379 (440)
                      +++....          ++.|.+.|+.+.+.+..       ++..        .....++|+|||+ ++++..  ++.|.
T Consensus       332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~-------I~vg--------~~P~gia~spDg~~~lyv~n~~s~~Vs  396 (426)
T 3c75_H          332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINK-------IELG--------HEIDSINVSQDAEPLLYALSAGTQTLH  396 (426)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE-------EEEE--------EEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             EEEEEecccccccccCCCCEEEEEECCCCeEEEE-------EECC--------CCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence            7766542          35799999987654321       1111        1256799999999 777755  79999


Q ss_pred             EEEcCCccchhhh
Q 013578          380 WLSVETGKVLDTA  392 (440)
Q Consensus       380 i~d~~~~~~~~~~  392 (440)
                      ++|+.+++.+.++
T Consensus       397 VID~~t~kvv~tI  409 (426)
T 3c75_H          397 IYDAATGEELRSV  409 (426)
T ss_dssp             EEETTTCCEEEEE
T ss_pred             EEECCCCCEEEEe
Confidence            9999999998776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.30  E-value=1.8e-10  Score=100.58  Aligned_cols=267  Identities=9%  Similarity=-0.017  Sum_probs=153.4

Q ss_pred             cccccccCcceeEEEEccCCCEEEEee----------CCCcEEEEecCCCCCcceeeEEecCC----CCCCCceEEEccC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATAC----------ADGVIRVHKLDDASSKSFKFLRINLP----PGGPPTAVAFADN  149 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s----------~dg~v~vW~~~~~~~~~~~~~~~~~~----~~~~v~~v~~~~~  149 (440)
                      +.++..-..+  .+.++|||++++.+.          .+++|.+||+.+.+..  ..+.....    .......++++||
T Consensus        59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv--~~I~v~~~~~~~~g~~P~~ia~SpD  134 (368)
T 1mda_H           59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI--ADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE--EEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE--EEEECCCccccccCCCcceEEEcCC
Confidence            3344333345  799999999998886          4789999999987632  11211100    1245789999999


Q ss_pred             CCeEEEEeecCCcceEEe--eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC
Q 013578          150 ATSIVVATHNLSGCSLYM--YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE  227 (440)
Q Consensus       150 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  227 (440)
                      |++++++.... ...+.+  ++... ...                          +. .  ..+....++++..+++.+.
T Consensus       135 Gk~lyVan~~~-~~~v~V~~iD~~t-v~~--------------------------i~-v--~~~~~~~p~g~~~~~~~~~  183 (368)
T 1mda_H          135 SACLLFFLFGS-SAAAGLSVPGASD-DQL--------------------------TK-S--ASCFHIHPGAAATHYLGSC  183 (368)
T ss_dssp             SSCEEEEECSS-SCEEEEEETTTEE-EEE--------------------------EE-C--SSCCCCEEEETTEEECCCC
T ss_pred             CCEEEEEccCC-CCeEEEEEEchhh-ceE--------------------------EE-C--CCceEEccCCCeEEEEEcC
Confidence            99999886431 123333  55433 100                          00 0  0001123455446667777


Q ss_pred             CceEEEEeCCC-----Cceee----eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee---e
Q 013578          228 GTDISIWHGKT-----GKLLG----NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ---L  295 (440)
Q Consensus       228 d~~i~vwd~~~-----~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~  295 (440)
                      |+.+.+.|+.+     ++...    .+.....+.   . .+++..++..+. +.+.+.|+..........+.....   .
T Consensus       184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~  258 (368)
T 1mda_H          184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKA  258 (368)
T ss_dssp             TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred             CCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccc
Confidence            88888888876     33321    122222222   3 666666666666 999999975322100000000000   0


Q ss_pred             ec-cccceEEEEEcCCCCEEEEEeC---------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578          296 KG-HKSAVTWLCFAPNSEQIITASK---------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS  365 (440)
Q Consensus       296 ~~-h~~~v~~~~~~p~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  365 (440)
                      .+ .......++++|++++++.+..         ++.+.++|+.+.+.+..       ++.        ......++|+|
T Consensus       259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~-------i~v--------g~~p~gi~~s~  323 (368)
T 1mda_H          259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP-------ISN--------GHDSDAIIAAQ  323 (368)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC-------CEE--------EEEECEEEECC
T ss_pred             cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE-------EEC--------CCCcceEEECC
Confidence            00 0111222689999988876533         23566999997754422       111        11356799999


Q ss_pred             CCCE-EEE-e-cCCEEEEEEcCCccchhhhhccccCCeEEEEecC
Q 013578          366 DGKI-LAA-T-HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP  407 (440)
Q Consensus       366 ~g~~-l~~-~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~  407 (440)
                      ||+. +++ . .++.|.++|+.+++.+..+.  -......+++.+
T Consensus       324 Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~--vg~~P~~i~~~~  366 (368)
T 1mda_H          324 DGASDNYANSAGTEVLDIYDAASDQDQSSVE--LDKGPESLSVQN  366 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCEEEEECC--CCSCCCEEECCC
T ss_pred             CCCEEEEEccCCCCeEEEEECCCCcEEEEEE--CCCCCCEEEeec
Confidence            9983 444 4 37999999999999998885  234456666654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.24  E-value=3.2e-09  Score=91.86  Aligned_cols=220  Identities=10%  Similarity=0.028  Sum_probs=128.2

Q ss_pred             cCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceee-EEec-CCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           90 HGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKF-LRIN-LPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        90 H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~-~~~~-~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      +...+.+++++++ |+++++.. ++.|.+|+.+ +...  .. .... ......+.++++.++++..++...+.....  
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~--~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~--  142 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFE--EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPA--  142 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEE--ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTS--
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEE--EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccc--
Confidence            5678999999999 76555554 4468889887 4321  01 0000 011245788999988875554432200000  


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD  246 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  246 (440)
                                              .+.                      ..      .....+.|..|+.. ++......
T Consensus       143 ------------------------~~~----------------------~~------~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A          143 ------------------------DYT----------------------RS------MQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             ------------------------CCC----------------------BT------TSSSCEEEEEECTT-SCEEEEEE
T ss_pred             ------------------------ccc----------------------cc------ccCCCCeEEEECCC-CCEEEecc
Confidence                                    000                      00      00112346666654 44332222


Q ss_pred             CCCCcccEEEec----CCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeeccc-cceEEEEEcCCCCEEEEEeCC
Q 013578          247 TNQLKNNMAAIS----PNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK-SAVTWLCFAPNSEQIITASKD  320 (440)
Q Consensus       247 ~~~~~v~~~~~s----~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~~~d  320 (440)
                       +......++++    ++++.|+++ ..++.|.+||+...  +..........+.++. ..+..++++++|+++++...+
T Consensus       170 -~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~--g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~  246 (314)
T 1pjx_A          170 -AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP--AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             -EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET--TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             -CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC--CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence             22345778999    999766665 45788999998621  1111112233344444 567899999999988887788


Q ss_pred             CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCC
Q 013578          321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVET  385 (440)
Q Consensus       321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~  385 (440)
                      +.|.+||.+++...       ..+.       .+...+.+++++++|+.|.++.  ++.|..|++..
T Consensus       247 ~~i~~~d~~~g~~~-------~~~~-------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          247 SHIEVFGPDGGQPK-------MRIR-------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TEEEEECTTCBSCS-------EEEE-------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEcCCCCcEe-------EEEe-------CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            89999998744321       1111       1113467899999999555443  56999999865

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.18  E-value=2.9e-09  Score=95.43  Aligned_cols=200  Identities=9%  Similarity=-0.000  Sum_probs=124.6

Q ss_pred             ccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC--CEEEEEeEecCCCceee
Q 013578          211 ATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA--DVKVWEIVYSKDGLVKA  288 (440)
Q Consensus       211 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~  288 (440)
                      .+.+.++++ ++++...++.|++||..+++........ .... ++|+++++.|+++..++  .|.+|+.....  .   
T Consensus       135 ~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~--~---  206 (409)
T 3hrp_A          135 GIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW--A---  206 (409)
T ss_dssp             EEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT--C---
T ss_pred             EEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc--e---
Confidence            344467776 7777777889999999877665554442 2334 89999999999998876  56666653322  0   


Q ss_pred             eeeeeeeec-cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-
Q 013578          289 VTSVMQLKG-HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-  366 (440)
Q Consensus       289 ~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-  366 (440)
                      ...+..+.. ....+.+++++|++..|+.+..++.|+.||..++....     .....   ........+...++|+|+ 
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-----~~~~~---~~g~~~~~P~~~ia~~p~~  278 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-----IKQLE---LSGSLGTNPGPYLIYYFVD  278 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-----EEECC---CCSCCCCSSCCEEEEETTT
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-----Eeccc---ccCCCCCCccccEEEeCCC
Confidence            001111112 34567899999955555557778899999987543210     00000   000000001127999996 


Q ss_pred             CCEEEEec-CCEEEEEEcCCccchhhhhccc---------------cCCeEEEEecCCCCCCCCCcceEEEEee-CCCeE
Q 013578          367 GKILAATH-GSTLQWLSVETGKVLDTAEKAH---------------EGEITCMAWAPKTIPMGNQQVSVLATSS-VDKKV  429 (440)
Q Consensus       367 g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h---------------~~~v~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~i  429 (440)
                      +.++++.. ++.|+.|+....  +..+ .++               -.....+++++++        .++++-. .++.|
T Consensus       279 g~lyv~d~~~~~I~~~~~~g~--~~~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG--------~lyvad~~~~~~I  347 (409)
T 3hrp_A          279 SNFYMSDQNLSSVYKITPDGE--CEWF-CGSATQKTVQDGLREEALFAQPNGMTVDEDG--------NFYIVDGFKGYCL  347 (409)
T ss_dssp             TEEEEEETTTTEEEEECTTCC--EEEE-EECTTCCSCBCEEGGGCBCSSEEEEEECTTC--------CEEEEETTTTCEE
T ss_pred             CEEEEEeCCCCEEEEEecCCC--EEEE-EeCCCCCCcCCCcccccEeCCCeEEEEeCCC--------CEEEEeCCCCCEE
Confidence            55444433 689999987543  1111 122               2358899999998        7777777 78999


Q ss_pred             EEEeCCCC
Q 013578          430 KLWLAPSL  437 (440)
Q Consensus       430 ~vw~~~~~  437 (440)
                      +.|++.++
T Consensus       348 ~~~~~~~G  355 (409)
T 3hrp_A          348 RKLDILDG  355 (409)
T ss_dssp             EEEETTTT
T ss_pred             EEEECCCC
Confidence            99997654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.17  E-value=4.7e-09  Score=90.03  Aligned_cols=192  Identities=10%  Similarity=0.051  Sum_probs=122.9

Q ss_pred             cCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578          214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      +.+++..++++...++.|+.||..+++. ..+.. ...+.+++++++|++++ +. ++.|.+||...+.   .   ..+.
T Consensus        20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~-~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~---~---~~~~   89 (297)
T 3g4e_A           20 WEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTM-DAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQS---A---VVLA   89 (297)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTCCE-EEEEC-SSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTE---E---EEEE
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCcE-EEEeC-CCceEEEEECCCCCEEE-EE-CCeEEEEECCCCc---E---EEEE
Confidence            3565565788888889999999987765 33332 45688999999999554 44 5678888864332   1   1111


Q ss_pred             eeec--cccceEEEEEcCCCCEEEEEeCC---------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          294 QLKG--HKSAVTWLCFAPNSEQIITASKD---------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       294 ~~~~--h~~~v~~~~~~p~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                      ....  ....+..++++|+|+++++...+         ..-.+|.+......       ....       ........++
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-------~~~~-------~~~~~pngi~  155 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-------KKYF-------DQVDISNGLD  155 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-------EEEE-------EEESBEEEEE
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-------EEEe-------eccccccceE
Confidence            1111  12457899999999976655332         23456655421110       0000       0111245799


Q ss_pred             eCCCCCEEEEec--CCEEEEEEc--CCccch-----hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          363 LSSDGKILAATH--GSTLQWLSV--ETGKVL-----DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       363 ~s~~g~~l~~~~--~~~i~i~d~--~~~~~~-----~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      |+|+++.|..++  ++.|.+|++  .++...     ..+ ..+.+.+..+++++++        ++.++...++.|.+|+
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~-~~~~~~p~g~~~d~~G--------~lwva~~~~~~v~~~d  226 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL-EKEEQIPDGMCIDAEG--------KLWVACYNGGRVIRLD  226 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC-CGGGCEEEEEEEBTTS--------CEEEEEETTTEEEEEC
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC-CCCCCCCCeeEECCCC--------CEEEEEcCCCEEEEEc
Confidence            999999776543  689999987  455431     122 1244578899999998        7888877788999999


Q ss_pred             CCCCC
Q 013578          434 APSLE  438 (440)
Q Consensus       434 ~~~~~  438 (440)
                      ..+++
T Consensus       227 ~~tG~  231 (297)
T 3g4e_A          227 PVTGK  231 (297)
T ss_dssp             TTTCC
T ss_pred             CCCce
Confidence            98664

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.17  E-value=1.2e-11  Score=109.40  Aligned_cols=181  Identities=10%  Similarity=-0.036  Sum_probs=100.2

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      .+++++.|+.|+.||..+|+.+..+..  ..+.+..+..++..+++++.||.|+.||..+++        .+..+..+..
T Consensus        11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~--------~~w~~~~~~~   80 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE--------GLTKLPFTIP   80 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C--------CSEECSCCHH
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc--------eeeeeeccCc
Confidence            788899999999999999999888776  445555556678888888899999999987665        2222221111


Q ss_pred             -ceE-EEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCE
Q 013578          301 -AVT-WLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGST  377 (440)
Q Consensus       301 -~v~-~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~  377 (440)
                       .+. +..+. .+..|++++.|+.|+.||.++++.+......              .    ...++|++..++++ .++.
T Consensus        81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~--------------~----~~~~~p~~~~v~~~~~dg~  141 (369)
T 2hz6_A           81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA--------------F----ADSLSPSTSLLYLGRTEYT  141 (369)
T ss_dssp             HHHTTCSCC------CCCCEEEEEEEEECCC----------------------------------------EEEEEEEEE
T ss_pred             cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC--------------C----cccccccCCEEEEEecCCE
Confidence             110 00111 3456778888999999999987654321110              0    12345566666655 4899


Q ss_pred             EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      |+.||..+|+.+..+. .+.  .....+.++.     .....++.++.||.|+.||..+++
T Consensus       142 v~a~d~~tG~~~W~~~-~~~--~~~~~~~~~~-----~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          142 ITMYDTKTRELRWNAT-YFD--YAASLPEDDV-----DYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             EECCCSSSSSCCCEEE-EEE--ECCBCCCCCT-----TCCCCEEEEETSCEEEEECTTTCC
T ss_pred             EEEEECCCCCEEEeEe-ccc--ccCccccCCc-----cccceEEEECCCCEEEEEECCCCc
Confidence            9999999999877653 111  2223333321     000356778889999999998876

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.16  E-value=9.9e-09  Score=90.11  Aligned_cols=176  Identities=11%  Similarity=0.097  Sum_probs=109.8

Q ss_pred             CceEEEEeCCCCceeeeeeCCCCc---ccEEEecCCCCeEEEEe-------------------cCCCEEEEEeEecCCCc
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQLK---NNMAAISPNGRFLAAAA-------------------FTADVKVWEIVYSKDGL  285 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~  285 (440)
                      .+.|.++|.++++.+..+.....+   ...+.|+|+++.+++..                   ...+|.+||+...+   
T Consensus       163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k---  239 (462)
T 2ece_A          163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK---  239 (462)
T ss_dssp             CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE---
T ss_pred             CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc---
Confidence            367999999999999888643222   33578899999888884                   36889999986532   


Q ss_pred             eeeeeeeeeeec--cccceEEEEE--cCCCCEEEEEe------CCCcEEEEecCccccccCCCCccccccccccCC----
Q 013578          286 VKAVTSVMQLKG--HKSAVTWLCF--APNSEQIITAS------KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS----  351 (440)
Q Consensus       286 ~~~~~~~~~~~~--h~~~v~~~~~--~p~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----  351 (440)
                           .+.++..  .......+.|  +|++++++.++      .+++|.+|..+.+...     ....+.++....    
T Consensus       240 -----~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-----~~~vIdi~~~~v~~~l  309 (462)
T 2ece_A          240 -----RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-----AEKVIEIPAEPLEGNL  309 (462)
T ss_dssp             -----EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-----EEEEEEECCEECCSSC
T ss_pred             -----EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-----EEEEEeCCCccccccc
Confidence                 2333332  1123445555  99999887776      4568887766532110     001110000000    


Q ss_pred             -------CCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCc---cchhhhhcc-------c------cCCeEEEEec
Q 013578          352 -------NGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETG---KVLDTAEKA-------H------EGEITCMAWA  406 (440)
Q Consensus       352 -------~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~---~~~~~~~~~-------h------~~~v~~v~~~  406 (440)
                             .+.......+.+|+||++|.++.  .+.|.+||+...   +.+..+..+       |      .+.-..++++
T Consensus       310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS  389 (462)
T 2ece_A          310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS  389 (462)
T ss_dssp             CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred             cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence                   00012356799999999998875  689999998633   344443222       1      0135889999


Q ss_pred             CCCCCCCCCcceEEEEee
Q 013578          407 PKTIPMGNQQVSVLATSS  424 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~t~~  424 (440)
                      ||+        ++|+.+.
T Consensus       390 pDG--------k~LyVaN  399 (462)
T 2ece_A          390 RDG--------RRVYVTN  399 (462)
T ss_dssp             TTS--------SEEEEEC
T ss_pred             CCC--------CEEEEEc
Confidence            998        6777766

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.16  E-value=3e-11  Score=106.92  Aligned_cols=158  Identities=10%  Similarity=0.059  Sum_probs=82.8

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCc-cc-EEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLK-NN-MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      .+++++.|+.|+.||..+++.+..+..+... +. ...+. .+..+++++.++.|+.||..+++        .+..+..+
T Consensus        51 ~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~--------~~w~~~~~  121 (369)
T 2hz6_A           51 AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGE--------KQQTLSSA  121 (369)
T ss_dssp             CEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------
T ss_pred             EEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCc--------EEEEecCC
Confidence            5666788999999999998876665433111 11 11111 35567888889999999998776        33333333


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC----CCEEEEec
Q 013578          299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD----GKILAATH  374 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~  374 (440)
                      .    ...++|++..+++++.|+.|+.||.++++.+....       ..         .....+++.+    +.+++++.
T Consensus       122 ~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-------~~---------~~~~~~~~~~~~~~~~v~~~~~  181 (369)
T 2hz6_A          122 F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT-------YF---------DYAASLPEDDVDYKMSHFVSNG  181 (369)
T ss_dssp             ---------------EEEEEEEEEEECCCSSSSSCCCEEE-------EE---------EECCBCCCCCTTCCCCEEEEET
T ss_pred             C----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-------cc---------cccCccccCCccccceEEEECC
Confidence            2    23456788889999999999999998775432110       00         0122333333    56666667


Q ss_pred             CCEEEEEEcCCccchhhhhccccCCeEE-EEecCCC
Q 013578          375 GSTLQWLSVETGKVLDTAEKAHEGEITC-MAWAPKT  409 (440)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~-v~~~~~~  409 (440)
                      ++.++.||..+|+.+....  ...++.. ..+++++
T Consensus       182 dg~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg  215 (369)
T 2hz6_A          182 DGLVVTVDSESGDVLWIQN--YASPVVAFYVWQREG  215 (369)
T ss_dssp             SCEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSS
T ss_pred             CCEEEEEECCCCcEEEEec--CCCceEEEEEecCCc
Confidence            9999999999999877653  3444433 3455554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.15  E-value=1.6e-09  Score=94.69  Aligned_cols=199  Identities=12%  Similarity=0.001  Sum_probs=131.7

Q ss_pred             EEEEeeCCc----eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe----------cCCCEEEEEeEecCCCce
Q 013578          221 IIASCSEGT----DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA----------FTADVKVWEIVYSKDGLV  286 (440)
Q Consensus       221 ~l~s~~~d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~  286 (440)
                      .+++...++    +|.++|..+++.+.++.....+  .+.++||+++++++.          .++.|.+||+.+.+    
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~----  107 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL----  107 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC----
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC----
Confidence            555555455    7899999999999999876665  799999999999987          36789999987665    


Q ss_pred             eeeeeeeeeecc-------ccceEEEEEcCCCCEEEEEeC--CCcEEE--EecCccccccC-------------------
Q 013578          287 KAVTSVMQLKGH-------KSAVTWLCFAPNSEQIITASK--DGTLRV--WNINVRYHLDE-------------------  336 (440)
Q Consensus       287 ~~~~~~~~~~~h-------~~~v~~~~~~p~~~~l~s~~~--dg~i~i--wd~~~~~~~~~-------------------  336 (440)
                          .+..+...       ......++++|||++++.+..  +..|.+  +|+.+...+..                   
T Consensus       108 ----vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~  183 (368)
T 1mda_H          108 ----PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSC  183 (368)
T ss_dssp             ----EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCC
T ss_pred             ----EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcC
Confidence                34444322       123568999999999988864  456888  88854111100                   


Q ss_pred             C-------CCc-----ccc-------ccc---c------------------ccCCCCC---------------------e
Q 013578          337 D-------PKT-----LKV-------LPI---P------------------LLDSNGA---------------------T  355 (440)
Q Consensus       337 ~-------~~~-----~~~-------~~~---~------------------~~~~~~~---------------------~  355 (440)
                      .       ...     .+.       +..   +                  .......                     .
T Consensus       184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p  263 (368)
T 1mda_H          184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             CCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEecccccccccccc
Confidence            0       000     000       000   0                  0000000                     0


Q ss_pred             eeeeeEEeCCCCCEEEEe-c-C--------CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee-
Q 013578          356 LQYDRLSLSSDGKILAAT-H-G--------STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS-  424 (440)
Q Consensus       356 ~~v~~~~~s~~g~~l~~~-~-~--------~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-  424 (440)
                      .....++++||++.+.++ . .        +.+.++|+.+++.+..+..+.  ....++|+||+.       .++++.. 
T Consensus       264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~-------~l~va~~~  334 (368)
T 1mda_H          264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGA-------SDNYANSA  334 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSS-------CEEEEEET
T ss_pred             CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCC-------EEEEEccC
Confidence            001127799998877653 2 2        367799999999998885333  689999999971       3667777 


Q ss_pred             CCCeEEEEeCCCCC
Q 013578          425 VDKKVKLWLAPSLE  438 (440)
Q Consensus       425 ~Dg~i~vw~~~~~~  438 (440)
                      .++.|.++|+.+++
T Consensus       335 ~~~~VsVID~~t~k  348 (368)
T 1mda_H          335 GTEVLDIYDAASDQ  348 (368)
T ss_dssp             TTTEEEEEESSSCE
T ss_pred             CCCeEEEEECCCCc
Confidence            59999999998875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.11  E-value=2e-08  Score=96.02  Aligned_cols=193  Identities=11%  Similarity=0.027  Sum_probs=124.4

Q ss_pred             CceEEEEeCCCCceeeeeeCCCCc--------------------------------ccEEEecCCCCeEEEEecCC----
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQLK--------------------------------NNMAAISPNGRFLAAAAFTA----  271 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~~~--------------------------------v~~~~~s~~~~~l~~~~~dg----  271 (440)
                      ++.|+.||..+|+.+..+......                                ...+++++++..+++++.++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            689999999999988776542211                                13578889999999887664    


Q ss_pred             ---------------CEEEEEeEecCCCceeeeeeeeeee--ccc-------cceEEEEEcCCC---CEEEEEeCCCcEE
Q 013578          272 ---------------DVKVWEIVYSKDGLVKAVTSVMQLK--GHK-------SAVTWLCFAPNS---EQIITASKDGTLR  324 (440)
Q Consensus       272 ---------------~i~i~d~~~~~~~~~~~~~~~~~~~--~h~-------~~v~~~~~~p~~---~~l~s~~~dg~i~  324 (440)
                                     .|..+|..+++        .+..++  .|.       ....-+....+|   ..++.++.+|.|+
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~--------~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~  340 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGK--------YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFF  340 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCC--------EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCC--------EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEE
Confidence                           37778876654        222222  121       122233444477   6789999999999


Q ss_pred             EEecCccccccCCCCcccc----cc---cc--------------cc-CCCCCeeeeeeEEeCCCCCEEEEec--------
Q 013578          325 VWNINVRYHLDEDPKTLKV----LP---IP--------------LL-DSNGATLQYDRLSLSSDGKILAATH--------  374 (440)
Q Consensus       325 iwd~~~~~~~~~~~~~~~~----~~---~~--------------~~-~~~~~~~~v~~~~~s~~g~~l~~~~--------  374 (440)
                      ++|.++++.+.........    +.   .+              .. ...+. .....++++|++.++.+..        
T Consensus       341 ~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~-~~w~~~a~dp~~~~~yv~~~~~~~~~~  419 (677)
T 1kb0_A          341 VLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA-HNWHPMSFNPQTGLVYLPAQNVPVNLM  419 (677)
T ss_dssp             EEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS-SCSSCCEEETTTTEEEEEEEECCCEEE
T ss_pred             EEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc-cCCCCceEcCCCCEEEEeChhcceeee
Confidence            9999988765321110000    00   00              00 00000 1123688999888776531        


Q ss_pred             ------------------------------------CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce
Q 013578          375 ------------------------------------GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS  418 (440)
Q Consensus       375 ------------------------------------~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~  418 (440)
                                                          .+.|..||+.+++.+..+.  +..++....+..++        .
T Consensus       420 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g--------~  489 (677)
T 1kb0_A          420 DDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAG--------N  489 (677)
T ss_dssp             ECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETT--------T
T ss_pred             cccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCC--------C
Confidence                                                1689999999999888764  44555555566655        5


Q ss_pred             EEEEeeCCCeEEEEeCCCCCC
Q 013578          419 VLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       419 ~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      +++.++.||.+++||+.+++.
T Consensus       490 ~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          490 VVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEECCCCcEEEEECCCCce
Confidence            888899999999999998873

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.09  E-value=2.5e-08  Score=85.84  Aligned_cols=219  Identities=11%  Similarity=0.067  Sum_probs=122.8

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC-CCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL-PPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      ..+..+...+.+++++++|+++++...++.|.+|+.+ +...  ....... .....+..+++.++|+..++-...+   
T Consensus        79 ~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~--~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g---  152 (305)
T 3dr2_A           79 DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH--LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFG---  152 (305)
T ss_dssp             EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--EEECEETTEECSCCCCEEECTTSCEEEECCSGG---
T ss_pred             EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE--EEEeccCCCccCCCCCEEECCCCCEEEeCcCCC---
Confidence            3445566778999999999977766666789999875 3211  1111111 1124567888888887554311000   


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                            ....                  +                        .+. ........+.|..||..+++...
T Consensus       153 ------~~~~------------------~------------------------~~~-~~~~~~~~~~v~~~d~~~g~~~~  183 (305)
T 3dr2_A          153 ------LRKP------------------S------------------------QGC-PADPELAHHSVYRLPPDGSPLQR  183 (305)
T ss_dssp             ------GSCG------------------G------------------------GSC-CCCCSSSCEEEEEECSSSCCCEE
T ss_pred             ------cccc------------------c------------------------ccc-ccccccCCCeEEEEcCCCCcEEE
Confidence                  0000                  0                        000 00000112347777776665433


Q ss_pred             eeeCCCCcccEEEecCCCCeEEEEecC------CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578          244 NVDTNQLKNNMAAISPNGRFLAAAAFT------ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA  317 (440)
Q Consensus       244 ~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  317 (440)
                      ..  .......++|+|+++.|+++...      +.|.+|++....   .........  ...+....++++++|++. ++
T Consensus       184 ~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~--~~~~~pdgi~~d~~G~lw-v~  255 (305)
T 3dr2_A          184 MA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFAS--VPDGLPDGFCVDRGGWLW-SS  255 (305)
T ss_dssp             EE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEEC--CSSSCCCSEEECTTSCEE-EC
T ss_pred             Ee--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEE--CCCCCCCeEEECCCCCEE-Ee
Confidence            32  23345779999999988888765      679999886322   111111111  123445678999999944 44


Q ss_pred             eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEc
Q 013578          318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSV  383 (440)
Q Consensus       318 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~  383 (440)
                      +.+ .|.+|+.... .+       ..+..+       . .+..++|+++++.|..+..+.++.+++
T Consensus       256 ~~~-gv~~~~~~g~-~~-------~~~~~~-------~-~~~~~~f~~d~~~L~it~~~~l~~~~~  304 (305)
T 3dr2_A          256 SGT-GVCVFDSDGQ-LL-------GHIPTP-------G-TASNCTFDQAQQRLFITGGPCLWMLPL  304 (305)
T ss_dssp             CSS-EEEEECTTSC-EE-------EEEECS-------S-CCCEEEECTTSCEEEEEETTEEEEEEC
T ss_pred             cCC-cEEEECCCCC-EE-------EEEECC-------C-ceeEEEEeCCCCEEEEEcCCeEEEEEC
Confidence            444 4999987532 11       111111       1 266799999998777776666665543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.09  E-value=3.6e-08  Score=94.39  Aligned_cols=194  Identities=11%  Similarity=0.020  Sum_probs=122.0

Q ss_pred             CceEEEEeCCCCceeeeeeCCC-------------------------------CcccEEEecCCCCeEEEEecCCC----
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQ-------------------------------LKNNMAAISPNGRFLAAAAFTAD----  272 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~-------------------------------~~v~~~~~s~~~~~l~~~~~dg~----  272 (440)
                      ++.|+.||..+|+.+..+....                               .....++++|++..+++++.++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            6899999999999887664210                               01125788898899999987763    


Q ss_pred             ---------------EEEEEeEecCCCceeeeeeeeeeec--cc-------cceEEEEEcCCCC---EEEEEeCCCcEEE
Q 013578          273 ---------------VKVWEIVYSKDGLVKAVTSVMQLKG--HK-------SAVTWLCFAPNSE---QIITASKDGTLRV  325 (440)
Q Consensus       273 ---------------i~i~d~~~~~~~~~~~~~~~~~~~~--h~-------~~v~~~~~~p~~~---~l~s~~~dg~i~i  325 (440)
                                     |..+|..+++        .+-.++.  |.       .++.......+|+   .++.++.+|.+++
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~--------~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~  333 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGE--------YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYV  333 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCC--------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCc--------eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEE
Confidence                           8888887665        2222221  21       1222223233565   7889999999999


Q ss_pred             EecCccccccCCCCcc------------cccccc--c--c---------CCCCCeeeeeeEEeCCCCCEEEEec------
Q 013578          326 WNINVRYHLDEDPKTL------------KVLPIP--L--L---------DSNGATLQYDRLSLSSDGKILAATH------  374 (440)
Q Consensus       326 wd~~~~~~~~~~~~~~------------~~~~~~--~--~---------~~~~~~~~v~~~~~s~~g~~l~~~~------  374 (440)
                      +|.++++.+.......            ..+..+  .  .         ...........++++|+..++.+..      
T Consensus       334 lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~  413 (689)
T 1yiq_A          334 IDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAY  413 (689)
T ss_dssp             EETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEE
T ss_pred             EECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEecccccee
Confidence            9999887752111000            000000  0  0         0000001123478888877666531      


Q ss_pred             ----------------------------------------CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCC
Q 013578          375 ----------------------------------------GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGN  414 (440)
Q Consensus       375 ----------------------------------------~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~  414 (440)
                                                              ++.|+.||+.+|+.+..+.  +..++..-.+...+     
T Consensus       414 ~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tag-----  486 (689)
T 1yiq_A          414 YEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP--YVTIFNGGTLSTAG-----  486 (689)
T ss_dssp             EECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETT-----
T ss_pred             eeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc--CCCCccCccceECC-----
Confidence                                                    2679999999999888764  33334443455454     


Q ss_pred             CcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          415 QQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       415 ~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                         .+++.|+.||.++.||.++++.
T Consensus       487 ---glvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          487 ---NLVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             ---TEEEEECTTSEEEEEETTTCCE
T ss_pred             ---CEEEEECCCCcEEEEECCCCcc
Confidence               5899999999999999999873

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.09  E-value=5e-09  Score=95.34  Aligned_cols=254  Identities=10%  Similarity=0.059  Sum_probs=145.4

Q ss_pred             CCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEE-c-cCCCeEEEEeecCCcceEEeecccccccccc
Q 013578          102 DGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF-A-DNATSIVVATHNLSGCSLYMYGEEKAISTNE  178 (440)
Q Consensus       102 dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  178 (440)
                      ||++|..... ++.|.+-|+++.+..  +.+  ..+....+..+++ . |+++++++++...    +-            
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~--~ii--~ip~g~~phg~~~~~~p~~~~v~~~~~~~----~p------------  159 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCD--AIL--EIPNAKGIHGLRPQKWPRSNYVFCNGEDE----TP------------  159 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEE--EEE--ECSSCCSEEEEEECCSSBCSEEEEEECSC----EE------------
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEe--eEE--eCCCCCCCcceeeeecCCCcEEEEecccc----cc------------
Confidence            8888877665 556999999886532  122  3444466788888 4 9999988776430    00            


Q ss_pred             ccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEec
Q 013578          179 GKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAIS  258 (440)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  258 (440)
                                                         ..+||+.+......++.+.++|..+.+.+.++.... ....++++
T Consensus       160 -----------------------------------~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~s  203 (595)
T 1fwx_A          160 -----------------------------------LVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDAD  203 (595)
T ss_dssp             -----------------------------------SSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEEC
T ss_pred             -----------------------------------cCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEEC
Confidence                                               022333222222345668889999988888877544 45678899


Q ss_pred             CCCCeEEEEecCC---------------CEEEEEeEecC----CCceeee-------------ee-eeeeeccccceEEE
Q 013578          259 PNGRFLAAAAFTA---------------DVKVWEIVYSK----DGLVKAV-------------TS-VMQLKGHKSAVTWL  305 (440)
Q Consensus       259 ~~~~~l~~~~~dg---------------~i~i~d~~~~~----~~~~~~~-------------~~-~~~~~~h~~~v~~~  305 (440)
                      |+|+++++.+.+.               .|.++|.....    ++.....             .. +..+. -.....++
T Consensus       204 pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv  282 (595)
T 1fwx_A          204 YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGC  282 (595)
T ss_dssp             SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCE
T ss_pred             CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEE
Confidence            9999999988653               24444431110    0000000             01 11121 12245679


Q ss_pred             EEcCCCCEEEEEe-CCCcEEEEecCccccccC-CCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEE
Q 013578          306 CFAPNSEQIITAS-KDGTLRVWNINVRYHLDE-DPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWL  381 (440)
Q Consensus       306 ~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~  381 (440)
                      .++|||++++.++ .+.+|.++|+.+...... ..............    ...-..++|+++| ++.+..  ++.|.+|
T Consensus       283 ~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v----G~gP~h~aF~~dG-~aY~t~~ldsqV~kw  357 (595)
T 1fwx_A          283 NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL----GLGPLHTAFDGRG-NAYTSLFLDSQVVKW  357 (595)
T ss_dssp             EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC----CSCEEEEEECTTS-EEEEEETTTTEEEEE
T ss_pred             EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC----CCCcceEEECCCC-eEEEEEecCCcEEEE
Confidence            9999999877665 678999999996532100 00000000000011    1224569999999 555543  8999999


Q ss_pred             EcCC----------ccchhhhhc----cccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578          382 SVET----------GKVLDTAEK----AHEGEITCMAWAPKTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       382 d~~~----------~~~~~~~~~----~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~  425 (440)
                      |+.+          .+.+..+..    +|...-.++.++|||        ++|+++..
T Consensus       358 di~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG--------k~l~~~Nk  407 (595)
T 1fwx_A          358 NIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN--------DWLVCLSK  407 (595)
T ss_dssp             EHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS--------SEEEEEES
T ss_pred             EhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC--------CEEEEcCC
Confidence            9977          334444421    222222334567887        77777643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.08  E-value=3.3e-09  Score=102.21  Aligned_cols=180  Identities=9%  Similarity=0.043  Sum_probs=109.5

Q ss_pred             CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC-------------EEEEEeEecCCCceeeeeeee
Q 013578          227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD-------------VKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      ....|++||+.+++.+... ........++|+ |++.|+.++.+..             |++|++.+...    ....+.
T Consensus       153 ~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----~~~~v~  226 (693)
T 3iuj_A          153 DWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE----DDRLVF  226 (693)
T ss_dssp             CEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG----GCEEEE
T ss_pred             ceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc----cceEEE
Confidence            3357999999999865431 112223567999 9999999987743             88888754431    111344


Q ss_pred             eeec-cccceEEEEEcCCCCEEEEEeC----CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578          294 QLKG-HKSAVTWLCFAPNSEQIITASK----DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK  368 (440)
Q Consensus       294 ~~~~-h~~~v~~~~~~p~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  368 (440)
                      .... |...+.++.|+|||++|+....    +..|+++|+.++..      ....+    .....   ..... ++++|.
T Consensus       227 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~------~~~~l----~~~~~---~~~~~-~~~~g~  292 (693)
T 3iuj_A          227 GAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA------PLLTV----QGDLD---ADVSL-VDNKGS  292 (693)
T ss_dssp             SCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC------CCEEE----ECSSS---SCEEE-EEEETT
T ss_pred             ecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC------ceEEE----eCCCC---ceEEE-EeccCC
Confidence            4444 5556789999999998754432    34899999875421      11111    11111   11122 566666


Q ss_pred             EEE-Eec----CCEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee-CCC--eEEEEeCCCC
Q 013578          369 ILA-ATH----GSTLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS-VDK--KVKLWLAPSL  437 (440)
Q Consensus       369 ~l~-~~~----~~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-~Dg--~i~vw~~~~~  437 (440)
                      .|+ .+.    .+.|..+++.++..  ...+ ..|...+.  .|++++        ..|+... .|+  .|++|++..+
T Consensus       293 ~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~--~~s~~g--------~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          293 TLYLLTNRDAPNRRLVTVDAANPGPAHWRDL-IPERQQVL--TVHSGS--------GYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EEEEEECTTCTTCEEEEEETTSCCGGGCEEE-ECCCSSCE--EEEEET--------TEEEEEEEETTEEEEEEECTTSC
T ss_pred             EEEEEECCCCCCCEEEEEeCCCCCccccEEE-ecCCCCEE--EEEEEC--------CEEEEEEEECCeeEEEEEECCCC
Confidence            544 333    36899999988764  2334 35665555  788876        5555444 454  6888888643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.06  E-value=2e-08  Score=88.01  Aligned_cols=234  Identities=9%  Similarity=0.015  Sum_probs=125.2

Q ss_pred             cccCcceeEEEEccCCCEEEEeeC-----CCcEEEEecCCCCCcceeeEEec---CCCCCCCceEEEccCCCeEEEEeec
Q 013578           88 KGHGDSVTGLCFSSDGKCLATACA-----DGVIRVHKLDDASSKSFKFLRIN---LPPGGPPTAVAFADNATSIVVATHN  159 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t~s~-----dg~v~vW~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~~~  159 (440)
                      .+|-..+.+++++++|+++++-..     ++.|.+||+.+++..  ......   ..+...+..+++++++..++++...
T Consensus        63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~--~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLS--RVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEE--EEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEE--EEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence            357788999999999987665443     578999999866421  111111   1223456889999876555444321


Q ss_pred             -CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC
Q 013578          160 -LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT  238 (440)
Q Consensus       160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~  238 (440)
                       .....+.+++......                |.....+..      .......+..+|. .+.+...++.++.|.   
T Consensus       141 ~~~~~~i~v~d~~~g~~----------------~r~~~~~~~------~~~~~~~~~~~g~-~~~~~~~~g~~~~~~---  194 (343)
T 2qe8_A          141 PDDKAALIRVDLQTGLA----------------ARVLQGYPG------IAPEDIDLVIDGV-PVQIGQPDGTVIRPH---  194 (343)
T ss_dssp             SGGGCEEEEEETTTCCE----------------EEECTTCTT------TSCCSCCCEETTE-ECBEECTTSCEECCC---
T ss_pred             cCCCCeEEEEECCCCCE----------------EEEecCCCc------ccccccceeECCE-EEEeccCCCceecee---
Confidence             0123455554332210                000000000      0000011122332 333344444443332   


Q ss_pred             CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEec--CCCceeeeee--eeeeeccccceEEEEEcCCCCEE
Q 013578          239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS--KDGLVKAVTS--VMQLKGHKSAVTWLCFAPNSEQI  314 (440)
Q Consensus       239 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l  314 (440)
                                 ..+..++++|+|+.|+++..++. ++|.+...  ..+.......  .....++.+....++++++|.++
T Consensus       195 -----------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~  262 (343)
T 2qe8_A          195 -----------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIY  262 (343)
T ss_dssp             -----------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEE
T ss_pred             -----------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEE
Confidence                       13567999999999999887764 55665432  1110000000  01122344556789999999988


Q ss_pred             EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578          315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH  374 (440)
Q Consensus       315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  374 (440)
                      ++...++.|.+||.+++...       ....      .........++|.++|+++++..
T Consensus       263 va~~~~~~V~~~d~~~G~~~-------~~~~------~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          263 VGDLAHSAIGVITSADRAYK-------LLVT------DEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             EEEGGGTEEEEEETTTTEEE-------EEEE------CGGGSCEEEEEECTTSCEEEEEC
T ss_pred             EEccCCCeEEEEECCCCCEE-------EEEE------CCceecCCeeEECCCCcEEEEeC
Confidence            88888999999998433210       0000      00122356799999888776654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.04  E-value=1.7e-07  Score=83.24  Aligned_cols=181  Identities=8%  Similarity=0.043  Sum_probs=108.6

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcc-----cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      .++.++.++.|..+|..+++.+..........     ......  +..+++++.++.+..+|..+++        .+...
T Consensus       145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~--------~~w~~  214 (376)
T 3q7m_A          145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQ--------MIWQQ  214 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCC--------EEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCc--------EEEEE
Confidence            67778889999999999999887765432211     122222  4567888889999999976554        12111


Q ss_pred             eccc--c-----ceEEEEEcC--CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC
Q 013578          296 KGHK--S-----AVTWLCFAP--NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD  366 (440)
Q Consensus       296 ~~h~--~-----~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  366 (440)
                      ....  .     .+..+...|  .+..++.++.++.+..+|.++++.+....            ...    ...+.. .+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~------------~~~----~~~~~~-~~  277 (376)
T 3q7m_A          215 RISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE------------LGS----VNDFIV-DG  277 (376)
T ss_dssp             ECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC------------CCC----EEEEEE-ET
T ss_pred             ecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc------------CCC----CCCceE-EC
Confidence            1100  0     000011111  24567788889999999998775432211            000    112222 24


Q ss_pred             CCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          367 GKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       367 g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +.++++..++.|..+|..+|+.+..........+...... +         ..|+.++.+|.+.++|..+++
T Consensus       278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~---------~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-N---------GNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-T---------TEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE-C---------CEEEEEeCCCeEEEEECCCCc
Confidence            5555556688999999999998765431222223333332 2         368888889999999998876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.03  E-value=3.9e-08  Score=85.41  Aligned_cols=188  Identities=10%  Similarity=0.010  Sum_probs=117.5

Q ss_pred             cCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578          214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM  293 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  293 (440)
                      ++++++.++++...++.|..||..+++.. .+.. ...+.+++++++|+++++. .+ .|.+||...+.   ..   .+.
T Consensus        56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~---~~---~~~  125 (326)
T 2ghs_A           56 FDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV---LT---LHA  125 (326)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC---EE---EEE
T ss_pred             EeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc---EE---EEe
Confidence            46776667888888889999999877543 3332 3568899999999877654 44 48888864332   11   111


Q ss_pred             eeec--cccceEEEEEcCCCCEEEEEeCC----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578          294 QLKG--HKSAVTWLCFAPNSEQIITASKD----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       294 ~~~~--h~~~v~~~~~~p~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  367 (440)
                      ....  ....+..++++|+|+++++...+    +...||.+.++..        ..+.       ........++|+|+|
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~--------~~~~-------~~~~~~~~i~~s~dg  190 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV--------TKLF-------ADISIPNSICFSPDG  190 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE--------EEEE-------EEESSEEEEEECTTS
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcE--------EEee-------CCCcccCCeEEcCCC
Confidence            1111  12458899999999976655422    2334444332211        0000       001124579999999


Q ss_pred             CEEEEec--CCEEEEEEcC--Cc-cch-----hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          368 KILAATH--GSTLQWLSVE--TG-KVL-----DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       368 ~~l~~~~--~~~i~i~d~~--~~-~~~-----~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      +.|..+.  ++.|.+|+..  ++ +..     ..+ ......+..+++.+++        .++++...++.|.+|+..
T Consensus       191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G--------~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEG--------HIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTS--------CEEEEEETTTEEEEECTT
T ss_pred             CEEEEEECCCCEEEEEEcccccCCcccCceEEEEC-CCCCCCCCeeEECCCC--------CEEEEEeCCCEEEEECCC
Confidence            8765543  6899999986  56 321     111 1234567889999997        677776667889999874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.96  E-value=1.2e-07  Score=82.58  Aligned_cols=182  Identities=14%  Similarity=0.035  Sum_probs=117.6

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      .+++.  ++.++.++.|..+|.. ++.+..+......+.++...+++.+++. +  +.|..+| ..+.        ....
T Consensus       145 ~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~--------~~~~  209 (330)
T 3hxj_A          145 SEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGT--------EKWN  209 (330)
T ss_dssp             CTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSC--------EEEE
T ss_pred             cCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCc--------EEEE
Confidence            33554  5667777889999998 8877777666666777888888875544 4  7888888 3332        2233


Q ss_pred             eeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578          295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH  374 (440)
Q Consensus       295 ~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  374 (440)
                      .......+.++...++|. |..++.++.|..+|... ..+.       ...  .     ....+..+.+.+++.+.+++.
T Consensus       210 ~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g-~~~~-------~~~--~-----~~~~~~~~~~~~~g~l~v~t~  273 (330)
T 3hxj_A          210 FYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG-TEKW-------RFK--T-----GKRIESSPVIGNTDTIYFGSY  273 (330)
T ss_dssp             ECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS-CEEE-------EEE--C-----SSCCCSCCEECTTSCEEEECT
T ss_pred             EccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC-CEeE-------Eee--C-----CCCccccceEcCCCeEEEecC
Confidence            333445678888888775 55667778888887532 2111       010  0     011123456677888777777


Q ss_pred             CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ++.|..+|. +++.+..+. .....+.++...+++         .|..++.+|.+++...+..+
T Consensus       274 ~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g---------~l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          274 DGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENG---------TIYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             TCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTC---------CEEEECTTSCEEEEEC----
T ss_pred             CCCEEEECC-CCcEEEEEE-cCCccccceEEcCCC---------EEEEEcCCCeEEEEeccccc
Confidence            889999996 677665552 344567777777775         57778899999998876544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.92  E-value=6.3e-07  Score=75.37  Aligned_cols=185  Identities=8%  Similarity=-0.066  Sum_probs=108.4

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHK  299 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  299 (440)
                      ++++....+.|..+++........+.........+++++++..|+.+. ..+.|.++++....    .    ........
T Consensus        50 ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~----~----~~~~~~~~  121 (267)
T 1npe_A           50 VYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ----R----RVLFDTGL  121 (267)
T ss_dssp             EEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----C----EEEECSSC
T ss_pred             EEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC----E----EEEEECCC
Confidence            444444566788888765543333332234568899999766666554 46778888864221    0    01111112


Q ss_pred             cceEEEEEcCCCCEEEEEeC---CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--
Q 013578          300 SAVTWLCFAPNSEQIITASK---DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--  374 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--  374 (440)
                      .....++++|++..|+.+..   .+.|..+++.....        ..+    ..  ........+++++++..|..++  
T Consensus       122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--------~~~----~~--~~~~~P~gia~d~~~~~lyv~d~~  187 (267)
T 1npe_A          122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--------RIL----AQ--DNLGLPNGLTFDAFSSQLCWVDAG  187 (267)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--------EEE----EC--TTCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--------EEE----EE--CCCCCCcEEEEcCCCCEEEEEECC
Confidence            45689999997665555443   36788888763211        000    00  0112245799999877665544  


Q ss_pred             CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .+.|.++|.........+.  .......++... +        .++++....+.|.+++..+++
T Consensus       188 ~~~I~~~~~~g~~~~~~~~--~~~~P~gi~~d~-~--------~lyva~~~~~~v~~~d~~~g~  240 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLE--GLQYPFAVTSYG-K--------NLYYTDWKTNSVIAMDLAISK  240 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEE--CCCSEEEEEEET-T--------EEEEEETTTTEEEEEETTTTE
T ss_pred             CCEEEEEecCCCceEEEec--CCCCceEEEEeC-C--------EEEEEECCCCeEEEEeCCCCC
Confidence            6899999987654333221  223445676653 3        566666667899999987654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.89  E-value=6.3e-08  Score=84.34  Aligned_cols=174  Identities=10%  Similarity=0.007  Sum_probs=114.8

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      .+..++.++.|..+|.. ++...........+.++...+++. +++++.++.|..||.. +.        ....+.....
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~--------~~~~~~~~~~  177 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT--------EKWRFKTNDA  177 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC--------EEEEEECSSC
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC--------EeEEEecCCC
Confidence            57777888889999988 877766665555567777777776 5567778889999875 33        2233333445


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW  380 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i  380 (440)
                      .+.++...+++..+ .++  +.|..+| .++.....       ..       .....+.++...++|.+.+++.++.|..
T Consensus       178 ~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~-------~~-------~~~~~~~~~~~~~~g~l~v~t~~~gl~~  239 (330)
T 3hxj_A          178 ITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWN-------FY-------AGYWTVTRPAISEDGTIYVTSLDGHLYA  239 (330)
T ss_dssp             CCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEE-------EC-------CSSCCCSCCEECTTSCEEEEETTTEEEE
T ss_pred             ceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEE-------Ec-------cCCcceeceEECCCCeEEEEcCCCeEEE
Confidence            56777777777744 444  7889999 54332211       00       0112366788899998888877888888


Q ss_pred             EEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          381 LSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       381 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      +|. +++.+..+. .....+..+...+++         .|..++.+|.|..++.
T Consensus       240 ~~~-~g~~~~~~~-~~~~~~~~~~~~~~g---------~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          240 INP-DGTEKWRFK-TGKRIESSPVIGNTD---------TIYFGSYDGHLYAINP  282 (330)
T ss_dssp             ECT-TSCEEEEEE-CSSCCCSCCEECTTS---------CEEEECTTCEEEEECT
T ss_pred             ECC-CCCEeEEee-CCCCccccceEcCCC---------eEEEecCCCCEEEECC
Confidence            874 565555442 233334455666554         5777788888988885

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.88  E-value=5.9e-08  Score=88.42  Aligned_cols=203  Identities=12%  Similarity=0.013  Sum_probs=127.4

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-CCcccEEEe-c-CCCCeEEEEec------------------CCCE
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-QLKNNMAAI-S-PNGRFLAAAAF------------------TADV  273 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~-s-~~~~~l~~~~~------------------dg~i  273 (440)
                      .+||+.++++...+..|.+.|+.+.++...+... ......+++ + |+++++++++.                  ++.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence            3577767777777888999999999988755432 234667777 5 99999998852                  3456


Q ss_pred             EEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC---------------cEEEEecCccccccCCC
Q 013578          274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG---------------TLRVWNINVRYHLDEDP  338 (440)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~  338 (440)
                      .+.|..+.+        ...++.-. +....++++|+|+++++.+.+.               .|.+.|...........
T Consensus       178 tvID~~t~~--------v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G  248 (595)
T 1fwx_A          178 TAVDADKWE--------VAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  248 (595)
T ss_dssp             EEEETTTTE--------EEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             EEEECCCCe--------EEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence            777764332        23333211 1346688999999999888653               25555543221100000


Q ss_pred             -----CccccccccccCCC------CCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccc------------hhhhh
Q 013578          339 -----KTLKVLPIPLLDSN------GATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKV------------LDTAE  393 (440)
Q Consensus       339 -----~~~~~~~~~~~~~~------~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~------------~~~~~  393 (440)
                           .....+........      .-.....++.++|||+++++++  +..|.++|+.+.+.            ...++
T Consensus       249 k~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          249 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             CSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             CeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence                 00111110000000      0011234699999999988875  68999999997642            22222


Q ss_pred             ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          394 KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       394 ~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                        -......++|+|+|        ...++.-.|+.|.+|++..
T Consensus       329 --vG~gP~h~aF~~dG--------~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          329 --LGLGPLHTAFDGRG--------NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             --CCSCEEEEEECTTS--------EEEEEETTTTEEEEEEHHH
T ss_pred             --CCCCcceEEECCCC--------eEEEEEecCCcEEEEEhhH
Confidence              33468999999998        7777888899999999864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.88  E-value=9.6e-08  Score=78.75  Aligned_cols=197  Identities=9%  Similarity=0.052  Sum_probs=123.4

Q ss_pred             cccCCCCCeEEEEeeC--CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceee
Q 013578          212 TYGTADGSTIIASCSE--GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKA  288 (440)
Q Consensus       212 ~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  288 (440)
                      +.+++++. ++++.+.  ++.|+++|+.+++.+..+..... .....+..+++.|+.+. .++.+.++|..+.+      
T Consensus        26 l~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~------   97 (266)
T 2iwa_A           26 LVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS------   97 (266)
T ss_dssp             EEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTE------
T ss_pred             EEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCc------
Confidence            44466653 4454443  57899999999999988764332 12222333455665555 57889999975443      


Q ss_pred             eeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578          289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK  368 (440)
Q Consensus       289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  368 (440)
                        .+.++......  ...+++||+.++.+..++.|.++|..+.+....       +..  ..........+.+.|. +|+
T Consensus        98 --v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~-------I~V--g~~~~p~~~~nele~~-dg~  163 (266)
T 2iwa_A           98 --NIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK-------HNV--KYNGHRVIRLNELEYI-NGE  163 (266)
T ss_dssp             --EEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE-------EEC--EETTEECCCEEEEEEE-TTE
T ss_pred             --EEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE-------EEE--CCCCcccccceeEEEE-CCE
Confidence              33334321111  233556888777777788999999986543221       111  1000011124456777 776


Q ss_pred             EEEEec-CCEEEEEEcCCccchhhhhccc------------cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          369 ILAATH-GSTLQWLSVETGKVLDTAEKAH------------EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       369 ~l~~~~-~~~i~i~d~~~~~~~~~~~~~h------------~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      +.+... ++.|.+.|..+++.+..+..+.            ....+.|+|+|++.       ++++|+...+++.+-++.
T Consensus       164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~-------~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK-------RIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT-------EEEEEETTCSEEEEEEEE
T ss_pred             EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC-------EEEEECCCCCeEEEEEEe
Confidence            555543 7899999999999877664210            13568999999862       688888889999998876


Q ss_pred             CC
Q 013578          436 SL  437 (440)
Q Consensus       436 ~~  437 (440)
                      ..
T Consensus       237 ~~  238 (266)
T 2iwa_A          237 LV  238 (266)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.85  E-value=9.8e-07  Score=72.77  Aligned_cols=154  Identities=8%  Similarity=-0.080  Sum_probs=94.8

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec--c
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG--H  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--h  298 (440)
                      +.++.-.++.+.++|..+++.+.++.....  ....+++||+.++++..+++|.++|..+.+        ....+.-  .
T Consensus        78 lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~--------v~~~I~Vg~~  147 (266)
T 2iwa_A           78 LYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFK--------LIKKHNVKYN  147 (266)
T ss_dssp             EEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCC--------EEEEEECEET
T ss_pred             EEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCc--------EEEEEEECCC
Confidence            455556788899999999999988865411  234466788888888788889999975433        2222221  1


Q ss_pred             ---ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ec
Q 013578          299 ---KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-TH  374 (440)
Q Consensus       299 ---~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~  374 (440)
                         -..++.+.|. ++..++....++.|.+.|..+++......-.. ..+...............++|+|+++.+.+ +.
T Consensus       148 ~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g-~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk  225 (266)
T 2iwa_A          148 GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPN-LRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK  225 (266)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHH-HHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred             CcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCC-cccccccccccccCceEEEEEcCCCCEEEEECC
Confidence               1236788888 67655555567899999999876543211100 000000011111223568999999875554 43


Q ss_pred             -CCEEEEEEcCCc
Q 013578          375 -GSTLQWLSVETG  386 (440)
Q Consensus       375 -~~~i~i~d~~~~  386 (440)
                       .+.++..++...
T Consensus       226 ~~~~v~~i~l~~~  238 (266)
T 2iwa_A          226 LWPKLFEIKLHLV  238 (266)
T ss_dssp             TCSEEEEEEEEEC
T ss_pred             CCCeEEEEEEecc
Confidence             578888777554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.84  E-value=2.2e-07  Score=88.86  Aligned_cols=165  Identities=15%  Similarity=0.109  Sum_probs=98.3

Q ss_pred             eEEEEeCCCCceeeeeeCCCC---------cccEEEecCCC---CeEEEEecCCCEEEEEeEecCCCceeeeee---eee
Q 013578          230 DISIWHGKTGKLLGNVDTNQL---------KNNMAAISPNG---RFLAAAAFTADVKVWEIVYSKDGLVKAVTS---VMQ  294 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~---------~v~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~  294 (440)
                      .|..+|..+|+.+..++....         ....+....+|   ..++.++.+|.++++|..+++.........   ...
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            599999999998877654211         12222333477   689999999999999976654100000000   000


Q ss_pred             eeccccce------------------------EEEEEcCCCCEEEEEeCC------------------------------
Q 013578          295 LKGHKSAV------------------------TWLCFAPNSEQIITASKD------------------------------  320 (440)
Q Consensus       295 ~~~h~~~v------------------------~~~~~~p~~~~l~s~~~d------------------------------  320 (440)
                      +.....++                        ..++|+|+..++++...+                              
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence            00000000                        257889988888776532                              


Q ss_pred             -------------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc
Q 013578          321 -------------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG  386 (440)
Q Consensus       321 -------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~  386 (440)
                                   |.|..||+.+++.+.+....               ..+....+..++.+++.+. ++.+++||..+|
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---------------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG  508 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---------------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATG  508 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEES---------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCCC---------------CCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence                         67888888876543221100               0122334555666666554 899999999999


Q ss_pred             cchhhhhccccCCeEEEEecCCC
Q 013578          387 KVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       387 ~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      +.+..+..++.....-+.|..++
T Consensus       509 ~~lw~~~~~~~~~~~p~~y~~~G  531 (677)
T 1kb0_A          509 EKLWEAPTGTGVVAAPSTYMVDG  531 (677)
T ss_dssp             CEEEEEECSSCCCSCCEEEEETT
T ss_pred             ceeeeeeCCCCcccCCEEEEeCC
Confidence            99988864554444556666776

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.82  E-value=5.3e-07  Score=79.31  Aligned_cols=191  Identities=12%  Similarity=0.089  Sum_probs=118.2

Q ss_pred             CCCCeEEEEeeCCceEEEEeCCCC----ceeeeee-------CCCCcccEEEecCCCCeEEEEecC------CCEEEEEe
Q 013578          216 ADGSTIIASCSEGTDISIWHGKTG----KLLGNVD-------TNQLKNNMAAISPNGRFLAAAAFT------ADVKVWEI  278 (440)
Q Consensus       216 ~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~  278 (440)
                      .+.+.+++++..++.|+++|..+.    +..+.++       ........+...|+| +++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            678878888999999999998755    5555552       112234557788999 66666555      67999997


Q ss_pred             EecCCCceeeeeeeeeeecc--c-cceEEEEEcCCCCEEEEEe-------------------CCCcEEEEecCccccccC
Q 013578          279 VYSKDGLVKAVTSVMQLKGH--K-SAVTWLCFAPNSEQIITAS-------------------KDGTLRVWNINVRYHLDE  336 (440)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~h--~-~~v~~~~~~p~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~  336 (440)
                      .+.+        .+..+...  . .--..+.|+|+++.+++..                   .+.+|.+||+.+++... 
T Consensus       172 ~T~~--------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~-  242 (462)
T 2ece_A          172 YSFE--------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH-  242 (462)
T ss_dssp             TTCC--------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE-
T ss_pred             CCCe--------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee-
Confidence            5443        34444321  1 1234588899999888874                   36799999998653321 


Q ss_pred             CCCccccccccccCCCCCeeeeeeE--EeCCCCCEEEEe-------cCCEEEEEEcCCcc-------------chhhhh-
Q 013578          337 DPKTLKVLPIPLLDSNGATLQYDRL--SLSSDGKILAAT-------HGSTLQWLSVETGK-------------VLDTAE-  393 (440)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~-------~~~~i~i~d~~~~~-------------~~~~~~-  393 (440)
                            .+..     .........+  +|+|+++++.++       .++.|.+|....++             ....+. 
T Consensus       243 ------tI~v-----g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          243 ------SLTL-----GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             ------EEES-----CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred             ------EEec-----CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence                  1111     0011112234  459999976653       34677665543332             111110 


Q ss_pred             --c---cccCCeEEEEecCCCCCCCCCcceEEEEeeC-CCeEEEEeCC
Q 013578          394 --K---AHEGEITCMAWAPKTIPMGNQQVSVLATSSV-DKKVKLWLAP  435 (440)
Q Consensus       394 --~---~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~vw~~~  435 (440)
                        .   +-......|.+++|+        ++|..+.. .+.|.+|++.
T Consensus       312 ~~~~f~~~~~~pa~I~lS~DG--------rfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLDD--------KFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTTS--------CEEEEEETTTTEEEEEECS
T ss_pred             cccccccCCCceeEEEECCCC--------CEEEEEeCCCCEEEEEEec
Confidence              0   002457899999998        66655544 7899999985

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.82  E-value=2.3e-06  Score=75.99  Aligned_cols=176  Identities=11%  Similarity=0.139  Sum_probs=106.3

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCc-------ccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLK-------NNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-------v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                      .++.+..++.|..+|..+++.+.........       +..+...|  .+..+++++.++.+..+|..+++        .
T Consensus       190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~--------~  261 (376)
T 3q7m_A          190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ--------I  261 (376)
T ss_dssp             EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC--------E
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc--------E
Confidence            5777888999999999999987766532110       00000111  35677788889999999986554        2


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                      +....  ......+..  ++..++.++.++.|..+|..+++.+......           ..  ..+..... .++.+++
T Consensus       262 ~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-----------~~--~~~~~~~~-~~~~l~v  323 (376)
T 3q7m_A          262 MWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-----------LH--RLLTSPVL-YNGNLVV  323 (376)
T ss_dssp             EEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT-----------TT--SCCCCCEE-ETTEEEE
T ss_pred             Eeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-----------CC--CcccCCEE-ECCEEEE
Confidence            22221  122334444  4667888888999999999877643221100           00  00111122 1345555


Q ss_pred             EecCCEEEEEEcCCccchhhhhccccCCeEE-EEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          372 ATHGSTLQWLSVETGKVLDTAEKAHEGEITC-MAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       372 ~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      ...+|.|+++|..+|+.+.... .....+.. ... .+         ..|+.++.||.|..|+
T Consensus       324 ~~~~g~l~~~d~~tG~~~~~~~-~~~~~~~~~~~~-~~---------~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          324 GDSEGYLHWINVEDGRFVAQQK-VDSSGFQTEPVA-AD---------GKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEE-CCTTCBCSCCEE-ET---------TEEEEEBTTSCEEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEEe-cCCCcceeCCEE-EC---------CEEEEEeCCCEEEEEe
Confidence            5568999999999999877653 22223322 222 23         3678888999999987

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.81  E-value=2.5e-06  Score=71.66  Aligned_cols=220  Identities=15%  Similarity=0.087  Sum_probs=124.6

Q ss_pred             cceeEEEEccCCCEEE-EeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578           92 DSVTGLCFSSDGKCLA-TACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE  170 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~-t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~  170 (440)
                      ..+.+++|++++..|+ +-..++.|.+++.+.....     .........+..+++++++..+.                
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-----~~~~~~~~~p~~ia~d~~~~~ly----------------   94 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-----TIIRQDLGSPEGIALDHLGRTIF----------------   94 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-----EEECTTCCCEEEEEEETTTTEEE----------------
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-----EEEECCCCCccEEEEEecCCeEE----------------
Confidence            4578999999765555 4456788999998754321     11111113456666666544333                


Q ss_pred             ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCC
Q 013578          171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL  250 (440)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  250 (440)
                                                                          ++....+.|.++++..............
T Consensus        95 ----------------------------------------------------v~d~~~~~I~~~~~~g~~~~~~~~~~~~  122 (267)
T 1npe_A           95 ----------------------------------------------------WTDSQLDRIEVAKMDGTQRRVLFDTGLV  122 (267)
T ss_dssp             ----------------------------------------------------EEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             ----------------------------------------------------EEECCCCEEEEEEcCCCCEEEEEECCCC
Confidence                                                                3333345566666543222111222223


Q ss_pred             cccEEEecCCCCeEEEEecC---CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEE-EeCCCcEEEE
Q 013578          251 KNNMAAISPNGRFLAAAAFT---ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT-ASKDGTLRVW  326 (440)
Q Consensus       251 ~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s-~~~dg~i~iw  326 (440)
                      ....++++|++..|+.+...   +.|..+++....    ..  .+  ..........++++|++..|+. -...+.|.++
T Consensus       123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~----~~--~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RR--IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CE--EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC----cE--EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            45789999977666666543   567777753211    10  11  1122345789999998766654 4456789999


Q ss_pred             ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEcCCccchhhhhccccCCeEEEE
Q 013578          327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVETGKVLDTAEKAHEGEITCMA  404 (440)
Q Consensus       327 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~  404 (440)
                      |+.......       .     .......   ..++..  +..|..+  .++.|..+|..+++.+..+..+.......++
T Consensus       195 ~~~g~~~~~-------~-----~~~~~~P---~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~  257 (267)
T 1npe_A          195 NPAQPGRRK-------V-----LEGLQYP---FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGIT  257 (267)
T ss_dssp             ETTEEEEEE-------E-----EECCCSE---EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEE
T ss_pred             ecCCCceEE-------E-----ecCCCCc---eEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceee
Confidence            987532110       0     0111112   245543  3444433  3689999999999988777433333577888


Q ss_pred             ecCCC
Q 013578          405 WAPKT  409 (440)
Q Consensus       405 ~~~~~  409 (440)
                      +.|++
T Consensus       258 ~~~~~  262 (267)
T 1npe_A          258 IALSQ  262 (267)
T ss_dssp             EECSC
T ss_pred             ecCcc
Confidence            88875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.80  E-value=7.2e-07  Score=85.47  Aligned_cols=180  Identities=14%  Similarity=0.123  Sum_probs=103.8

Q ss_pred             cCCCCCeEEEEeeCCc-------------------eEEEEeCCCCceeeeeeCCCC---------cccEEEecCCCC---
Q 013578          214 GTADGSTIIASCSEGT-------------------DISIWHGKTGKLLGNVDTNQL---------KNNMAAISPNGR---  262 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~~~---------~v~~~~~s~~~~---  262 (440)
                      +.+++. +++.++.++                   .|..+|..+|+.+..++....         .........+|+   
T Consensus       242 ~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~  320 (689)
T 1yiq_A          242 YDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRK  320 (689)
T ss_dssp             EETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred             EcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEE
Confidence            345555 666666665                   399999999999877764211         111112223565   


Q ss_pred             eEEEEecCCCEEEEEeEecCCCceeeeee---eee-----------------eecccc-----------ceEEEEEcCCC
Q 013578          263 FLAAAAFTADVKVWEIVYSKDGLVKAVTS---VMQ-----------------LKGHKS-----------AVTWLCFAPNS  311 (440)
Q Consensus       263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~-----------------~~~h~~-----------~v~~~~~~p~~  311 (440)
                      .++.++.+|.++++|..+++.........   ...                 +.....           .-..++|+|+.
T Consensus       321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~  400 (689)
T 1yiq_A          321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT  400 (689)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence            78899999999999976554100000000   000                 000000           01237889988


Q ss_pred             CEEEEEeC---------------------------------------------CCcEEEEecCccccccCCCCccccccc
Q 013578          312 EQIITASK---------------------------------------------DGTLRVWNINVRYHLDEDPKTLKVLPI  346 (440)
Q Consensus       312 ~~l~s~~~---------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~  346 (440)
                      .++++...                                             +|.|+.||+.+++.+.+...       
T Consensus       401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-------  473 (689)
T 1yiq_A          401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY-------  473 (689)
T ss_dssp             TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE-------
T ss_pred             CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC-------
Confidence            87777643                                             25677777776654322110       


Q ss_pred             cccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          347 PLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       347 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                        .      ..+....+...+.+++.++ |+.++.||.++|+.+..+..++.....-+.|..++
T Consensus       474 --~------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G  529 (689)
T 1yiq_A          474 --V------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDG  529 (689)
T ss_dssp             --S------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             --C------CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECC
Confidence              0      0011224445566666655 89999999999999988754444334557777776

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.80  E-value=2.1e-06  Score=74.42  Aligned_cols=115  Identities=9%  Similarity=0.014  Sum_probs=70.4

Q ss_pred             ceEEEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-----
Q 013578          301 AVTWLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-----  374 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----  374 (440)
                      ....++++|++++|+.+ +.++.|.+|++.....     .....+.    ...+    ...+++.++|.+.++..     
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-----~~~~~~~----~~~g----P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-----GTAEVLV----KIPN----PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-----TCEEEEE----ECSS----EEEEEECTTSCEEEEEEEETTS
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-----CccceEE----eCCC----CCCeEECCCCCEEEEecCcccc
Confidence            45679999999866555 5668999999874310     0111110    0111    35689999998766643     


Q ss_pred             ------CCEEEEEEcCCccchhhhhccc---cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          375 ------GSTLQWLSVETGKVLDTAEKAH---EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       375 ------~~~i~i~d~~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                            .+.|..+|.. ++.+..+....   -..++.+++. ++        .++++....+.|.++++....
T Consensus       253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g--------~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DG--------LLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TT--------EEEEECSSCSEEEEEEC----
T ss_pred             cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CC--------EEEEeecCCCceEEEeccccc
Confidence                  3568888864 66655543211   2346677764 44        677777778999999987544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.78  E-value=2.1e-07  Score=75.64  Aligned_cols=178  Identities=11%  Similarity=0.070  Sum_probs=111.4

Q ss_pred             CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      +..++.+.+.++.|+++|+++++.+..+ ... .....-+.++++.|+... .++.+.+||..+.+        .+.++.
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~--------~~~ti~  133 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ--------RERTTR  133 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTE--------EEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCc--------EEEEEe
Confidence            3447788888889999999999988877 332 333322334455555554 57889999986544        344444


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578          297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G  375 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~  375 (440)
                      .. ..-..++  +++..|+.+..++.|.++|.++.+....       +..  .........++.+.|. +|++.+... +
T Consensus       134 ~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~-------I~V--~~~g~~v~~lNeLe~~-dG~lyanvw~s  200 (268)
T 3nok_A          134 YS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA-------VQV--KLRGQPVELINELECA-NGVIYANIWHS  200 (268)
T ss_dssp             CS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEE-------EEC--EETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred             CC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE-------EEe--CCCCcccccccccEEe-CCEEEEEECCC
Confidence            22 1223444  4678887777788999999887644321       111  1111111123456665 777666553 7


Q ss_pred             CEEEEEEcCCccchhhhhcc------------ccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578          376 STLQWLSVETGKVLDTAEKA------------HEGEITCMAWAPKTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~------------h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~  425 (440)
                      +.|.+.|.++|+.+..+...            -....+.|+|+|++.       ++++||-.
T Consensus       201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~-------rlfVTGK~  255 (268)
T 3nok_A          201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG-------RIFMTGKL  255 (268)
T ss_dssp             SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC-------CEEEEETT
T ss_pred             CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC-------EEEEeCCC
Confidence            89999999999887655311            123678999999761       56776643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.70  E-value=1.1e-06  Score=83.85  Aligned_cols=193  Identities=11%  Similarity=0.040  Sum_probs=115.6

Q ss_pred             CceEEEEeCCCCceeeeeeCCC-------------------------------CcccEEEecCCCCeEEEEecCCC----
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQ-------------------------------LKNNMAAISPNGRFLAAAAFTAD----  272 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~-------------------------------~~v~~~~~s~~~~~l~~~~~dg~----  272 (440)
                      ++.|+.+|..+|+.+..+....                               .....++++++...+++++.++.    
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            5789999999998887664310                               01124688888888888887663    


Q ss_pred             ---------------EEEEEeEecCCCceeeeeeeeeeec--cc-------cceEEEEEcCCCC---EEEEEeCCCcEEE
Q 013578          273 ---------------VKVWEIVYSKDGLVKAVTSVMQLKG--HK-------SAVTWLCFAPNSE---QIITASKDGTLRV  325 (440)
Q Consensus       273 ---------------i~i~d~~~~~~~~~~~~~~~~~~~~--h~-------~~v~~~~~~p~~~---~l~s~~~dg~i~i  325 (440)
                                     |..+|..+++        .+-.++.  |.       .+.....+..+|+   .++.++.+|.+.+
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~--------~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~  328 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGK--------LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYV  328 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCC--------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCc--------eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEE
Confidence                           7778876655        2222221  22       2233333334665   6888999999999


Q ss_pred             EecCccccccCCCCcc----ccc----ccccc------C--------CCCCeeeeeeEEeCCCCCEEEEe----------
Q 013578          326 WNINVRYHLDEDPKTL----KVL----PIPLL------D--------SNGATLQYDRLSLSSDGKILAAT----------  373 (440)
Q Consensus       326 wd~~~~~~~~~~~~~~----~~~----~~~~~------~--------~~~~~~~v~~~~~s~~g~~l~~~----------  373 (440)
                      +|.++++.+.......    ..+    ..+..      .        ..........++++|+..++.+.          
T Consensus       329 lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~  408 (668)
T 1kv9_A          329 LDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRN  408 (668)
T ss_dssp             EETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECC
T ss_pred             EECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeee
Confidence            9999887652110000    000    00000      0        00000112236777776654431          


Q ss_pred             ---------------------------cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578          374 ---------------------------HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD  426 (440)
Q Consensus       374 ---------------------------~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D  426 (440)
                                                 .++.|..||..+|+.+....  +........+...+        .+++.++.|
T Consensus       409 ~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~~~~~t~g--------g~vf~g~~d  478 (668)
T 1kv9_A          409 EGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAG--------NLVFQGTAA  478 (668)
T ss_dssp             CGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETT--------TEEEEECTT
T ss_pred             eccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc--CCCCCcCceeEeCC--------CEEEEECCc
Confidence                                       13789999999999887764  33333333333344        588889999


Q ss_pred             CeEEEEeCCCCC
Q 013578          427 KKVKLWLAPSLE  438 (440)
Q Consensus       427 g~i~vw~~~~~~  438 (440)
                      |.++.||..+++
T Consensus       479 g~l~a~d~~tG~  490 (668)
T 1kv9_A          479 GQMHAYSADKGE  490 (668)
T ss_dssp             SEEEEEETTTCC
T ss_pred             ccchhhhhhcCh
Confidence            999999999886

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.68  E-value=3.7e-06  Score=68.44  Aligned_cols=141  Identities=9%  Similarity=0.015  Sum_probs=84.8

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee----
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK----  296 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----  296 (440)
                      +.+..-.++.+.+||..+.+.+.++.....   ...++++++.|+....+++|.++|..+.+        .+..+.    
T Consensus        99 ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~--------v~~~I~V~~~  167 (262)
T 3nol_A           99 IVGLTWKNGLGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLT--------PVRTITVTAH  167 (262)
T ss_dssp             EEEEESSSSEEEEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCS--------EEEEEECEET
T ss_pred             EEEEEeeCCEEEEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCe--------EEEEEEeccC
Confidence            444455688899999999999999876432   23344678888888777889998875443        222221    


Q ss_pred             ccc-cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecC
Q 013578          297 GHK-SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG  375 (440)
Q Consensus       297 ~h~-~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  375 (440)
                      +.. ..++.+.|. +|+.++..-.++.|.+.|.++++......... ..+ ..........-.+.++|+|+++.|.+...
T Consensus       168 g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~-L~~-~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          168 GEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNG-ILA-EAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTT-GGG-GSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCc-Ccc-ccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            111 334567776 67655555568899999999876543211100 000 00000111223578999998776655443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.68  E-value=9.7e-07  Score=71.86  Aligned_cols=176  Identities=16%  Similarity=0.193  Sum_probs=109.5

Q ss_pred             eEEEEeeCCc--eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          220 TIIASCSEGT--DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       220 ~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      .++.+.+.+|  .|+++|+++++.+..+.... ......+.++++.|+... .++.+.+||..+.+        .+.++.
T Consensus        54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~--------~~~ti~  124 (262)
T 3nol_A           54 YFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR--------QVRSFN  124 (262)
T ss_dssp             EEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCC--------EEEEEE
T ss_pred             EEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCc--------EEEEEE
Confidence            3666776665  89999999999998887643 333333444566666665 47889999986554        444444


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCe-eeeeeEEeCCCCCEEEEec-
Q 013578          297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT-LQYDRLSLSSDGKILAATH-  374 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~-  374 (440)
                      ...   ....+++++..|+.+..++.|.++|..+.+....       ++..  . .+.. ..++.+.|. +|++.+... 
T Consensus       125 ~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~-------I~V~--~-~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          125 YDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT-------ITVT--A-HGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             CSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEE-------EECE--E-TTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             CCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE-------EEec--c-CCccccccceeEEE-CCEEEEEEcc
Confidence            221   2223335777777776678899999986543321       1111  0 0111 123346665 777666553 


Q ss_pred             CCEEEEEEcCCccchhhhhcc-----------ccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578          375 GSTLQWLSVETGKVLDTAEKA-----------HEGEITCMAWAPKTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~-----------h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~  425 (440)
                      ++.|.+.|.++|+.+..+...           -....+.|+|+|+..       ++++||-.
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~-------~lfVTGK~  245 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH-------RLFVTGKL  245 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT-------EEEEEETT
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC-------EEEEECCC
Confidence            789999999999987665311           123568999999861       55666543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.67  E-value=1.6e-05  Score=74.29  Aligned_cols=196  Identities=8%  Similarity=-0.029  Sum_probs=110.1

Q ss_pred             CCceEEEEeCCCCceeeeeeCCCCcc--------------------------------------cEEEecCCCCeEEEEe
Q 013578          227 EGTDISIWHGKTGKLLGNVDTNQLKN--------------------------------------NMAAISPNGRFLAAAA  268 (440)
Q Consensus       227 ~d~~i~vwd~~~~~~~~~~~~~~~~v--------------------------------------~~~~~s~~~~~l~~~~  268 (440)
                      .++.|+.+|.++|+.+-.+.......                                      ..+++.++...++.++
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            37899999999999887665432110                                      1345667777888877


Q ss_pred             cCC----------------CEEEEEeEecCCCceeeeeeeeeeeccc--------cceEEEEEc-CCC---CEEEEEeCC
Q 013578          269 FTA----------------DVKVWEIVYSKDGLVKAVTSVMQLKGHK--------SAVTWLCFA-PNS---EQIITASKD  320 (440)
Q Consensus       269 ~dg----------------~i~i~d~~~~~~~~~~~~~~~~~~~~h~--------~~v~~~~~~-p~~---~~l~s~~~d  320 (440)
                      .++                .|..+|..+++    ..+.  .+...|.        .++. +... .+|   ..++.++.+
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~----~~W~--~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~  332 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGE----AKFG--YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRN  332 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCC----EEEE--EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTT
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCc----eeeE--eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCC
Confidence            653                67777776554    1111  1112221        2222 2222 467   467778899


Q ss_pred             CcEEEEecCccccccCCCCcc-------------ccccccccC------------CCCCeeeeeeEEeCCCCCEEEEe--
Q 013578          321 GTLRVWNINVRYHLDEDPKTL-------------KVLPIPLLD------------SNGATLQYDRLSLSSDGKILAAT--  373 (440)
Q Consensus       321 g~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~------------~~~~~~~v~~~~~s~~g~~l~~~--  373 (440)
                      |.+.++|.++++.+.......             +....+...            ..........++++|+..++.+.  
T Consensus       333 G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~  412 (599)
T 1w6s_A          333 GIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGIN  412 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEE
T ss_pred             cEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEecc
Confidence            999999999887653221100             000000000            00000112346677765544331  


Q ss_pred             --------------------------------------cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCC
Q 013578          374 --------------------------------------HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQ  415 (440)
Q Consensus       374 --------------------------------------~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~  415 (440)
                                                            ..+.|..||..+|+.+.+..  +..++..-.....+      
T Consensus       413 ~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tag------  484 (599)
T 1w6s_A          413 HICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM--ERFAVWGGTMATAG------  484 (599)
T ss_dssp             CEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE--ESSCCCSBCEEETT------
T ss_pred             ccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec--CCCCccCcceEecC------
Confidence                                                  23678888888888877653  22222211111122      


Q ss_pred             cceEEEEeeCCCeEEEEeCCCCCC
Q 013578          416 QVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       416 ~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                        .+++.++.||.++.||.++++.
T Consensus       485 --g~vf~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          485 --DLVFYGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             --TEEEEECTTSEEEEEETTTCCE
T ss_pred             --CEEEEECCCCeEEEEECCCCCE
Confidence              4777799999999999999873

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.59  E-value=3.5e-06  Score=68.01  Aligned_cols=176  Identities=12%  Similarity=0.122  Sum_probs=107.5

Q ss_pred             EEEEeeCC--ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578          221 IIASCSEG--TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       221 ~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                      ++.+.+.+  ..|+.+|+.+++.+..+..... .....+...++.|+.. -.++.+.+||..+.+        .+.++..
T Consensus        33 LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~--------~~~ti~~  103 (243)
T 3mbr_X           33 LYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT--------PRARFRY  103 (243)
T ss_dssp             EEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTE--------EEEEEEC
T ss_pred             EEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCc--------EEEEEeC
Confidence            66666664  4899999999999988875433 2223333345555554 458889999975543        4444442


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCC
Q 013578          298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGS  376 (440)
Q Consensus       298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~  376 (440)
                      ... =..++  +++..|+.+..++.|.++|..+......       ++.  .........++.+.+. +|++.+.. ...
T Consensus       104 ~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~-------I~V--~~~g~~~~~lNeLe~~-~G~lyanvw~s~  170 (243)
T 3mbr_X          104 PGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGS-------IKV--TAGGRPLDNLNELEWV-NGELLANVWLTS  170 (243)
T ss_dssp             SSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEE-------EEC--EETTEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred             CCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEE-------EEE--ccCCcccccceeeEEe-CCEEEEEECCCC
Confidence            222 23444  4677777777788999999987543321       111  1000001123344544 67766655 478


Q ss_pred             EEEEEEcCCccchhhhhcc------------ccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578          377 TLQWLSVETGKVLDTAEKA------------HEGEITCMAWAPKTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~------------h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~  425 (440)
                      .|.+.|.++|+.+..+...            -....+.|+++|++.       ++++||-.
T Consensus       171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~-------~lfVTGK~  224 (243)
T 3mbr_X          171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD-------RLFVTGKR  224 (243)
T ss_dssp             EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT-------EEEEEETT
T ss_pred             eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC-------EEEEECCC
Confidence            9999999999987655311            123578999999761       66666644

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.57  E-value=2.7e-05  Score=74.48  Aligned_cols=277  Identities=6%  Similarity=-0.030  Sum_probs=141.5

Q ss_pred             EEEEcc-CCCEEEEeeCCC-----------cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578           96 GLCFSS-DGKCLATACADG-----------VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC  163 (440)
Q Consensus        96 ~l~~s~-dg~~l~t~s~dg-----------~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~  163 (440)
                      ++++.+ +|+.++.|+.++           .+.+||..+..-....  .....+.....++++..+++.+++++.+..  
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~--  265 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--VTVTKHDMFCPGISMDGNGQIVVTGGNDAK--  265 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--EEECSCCCSSCEEEECTTSCEEEECSSSTT--
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc--ccCCCCCCccccccCCCCCCEEEeCCCCCC--
Confidence            566777 889999887653           5788988876533222  222223334456788899998888876533  


Q ss_pred             eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-CC-----ceEEEEeCC
Q 013578          164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-EG-----TDISIWHGK  237 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d-----~~i~vwd~~  237 (440)
                      .+++++..........    .++.  ..|                ...+...++++ +++.|+ .+     ..+.+||..
T Consensus       266 ~v~~yd~~t~~W~~~~----~~~~--~R~----------------~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGP----DMQV--ARG----------------YQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             CEEEEEGGGTEEEECC----CCSS--CCS----------------SCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETT
T ss_pred             ceEEecCcCCceeECC----CCCc--ccc----------------ccceEEecCCe-EEEEeCcccCCcccccceEeCCC
Confidence            5666665443211110    0000  000                01112235677 666666 33     469999998


Q ss_pred             CCceeeee-----eCCCCcccEEEecCCCCeEEEEecCCC---------EEEEEeEecCCCceeeeeeeeeeec------
Q 013578          238 TGKLLGNV-----DTNQLKNNMAAISPNGRFLAAAAFTAD---------VKVWEIVYSKDGLVKAVTSVMQLKG------  297 (440)
Q Consensus       238 ~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~---------i~i~d~~~~~~~~~~~~~~~~~~~~------  297 (440)
                      +++-...-     ......- ...+..++..++.|+.+|.         +..||.....  ...   .......      
T Consensus       323 t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~--w~~---~~~~~~~~~~~~~  396 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG--DVK---SAGKRQSNRGVAP  396 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC--EEE---EEEECEETTEECC
T ss_pred             CCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecCCcc--eee---cCCccccccccCC
Confidence            76543220     0000000 1123356666677766654         4566654322  000   1111100      


Q ss_pred             cccceEEEEEcC-CCCEEEEEeCCC-----------cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578          298 HKSAVTWLCFAP-NSEQIITASKDG-----------TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS  365 (440)
Q Consensus       298 h~~~v~~~~~~p-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  365 (440)
                      ....-.++.|.. ++++++.|+.++           .|.+||..+........   ..++        ....-..++..|
T Consensus       397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~mp--------~~R~~~~~~~l~  465 (656)
T 1k3i_A          397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS---NGLY--------FARTFHTSVVLP  465 (656)
T ss_dssp             CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT---TCCS--------SCCBSCEEEECT
T ss_pred             CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEcc---CCCC--------CCcccCCeEECC
Confidence            011223444433 677788887543           56777776543211000   0000        011122456678


Q ss_pred             CCCEEEEec-C-----------CEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578          366 DGKILAATH-G-----------STLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       366 ~g~~l~~~~-~-----------~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~  425 (440)
                      +|++++.|. +           ..+.+||..+.+-  +..+. .......+..+.|++        ++++.||.
T Consensus       466 ~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~-~~R~~hs~a~ll~dg--------~v~v~GG~  530 (656)
T 1k3i_A          466 DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS-IVRVYHSISLLLPDG--------RVFNGGGG  530 (656)
T ss_dssp             TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS-SCCCTTEEEEECTTS--------CEEEEECC
T ss_pred             CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC-CccccccHhhcCCCc--------EEEecCCC
Confidence            999888764 2           4689999877652  22221 111222344566887        88998885

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.57  E-value=8e-06  Score=76.36  Aligned_cols=55  Identities=13%  Similarity=-0.050  Sum_probs=38.4

Q ss_pred             CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      ++.|+.||..+++.+.++.  +...+........+        .+++.++.||.|+.||..+++.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~--~~~~~~~~~~~t~g--------g~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKW--EKFAAWGGTLYTKG--------GLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEE--ESSCCCSBCEEETT--------TEEEEECTTSEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCCEEEEec--CCCCccceeEEECC--------CEEEEEcCCCeEEEEECCCCCE
Confidence            4789999999999887764  33333332222222        4677789999999999998863

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.56  E-value=3.1e-05  Score=75.19  Aligned_cols=65  Identities=14%  Similarity=0.199  Sum_probs=43.1

Q ss_pred             cccCc-ceeEEEEc-cCCCEEEEeeC-C----CcEEEEecCCC-CCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578           88 KGHGD-SVTGLCFS-SDGKCLATACA-D----GVIRVHKLDDA-SSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN  159 (440)
Q Consensus        88 ~~H~~-~V~~l~~s-~dg~~l~t~s~-d----g~v~vW~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~  159 (440)
                      ++|.- .+...+|| |||++||.+.. +    .+|+++|+.++ +.... .+.      .....++|+||++.|+....+
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~------~~~~~~~WspDg~~l~y~~~d  241 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS------GTNGEIVWGPDHTSLFYVTKD  241 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE------EECSCCEECSSTTEEEEEEEC
T ss_pred             cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc------CceeeEEEecCCCEEEEEEEC
Confidence            35554 78899999 99998885532 2    35999999887 42111 111      124578899999887776543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.52  E-value=0.00012  Score=59.89  Aligned_cols=126  Identities=8%  Similarity=0.027  Sum_probs=73.6

Q ss_pred             CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee--e--eccccceEEEEEcCCCC-EEEEEeCCCcE
Q 013578          249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ--L--KGHKSAVTWLCFAPNSE-QIITASKDGTL  323 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~--~~h~~~v~~~~~~p~~~-~l~s~~~dg~i  323 (440)
                      ......++|+|+++.|+++.+.....+|.+.......  .......  +  ..+...+.+++++|... +++....+..+
T Consensus       120 N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~--~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L  197 (255)
T 3qqz_A          120 NCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN--ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRAL  197 (255)
T ss_dssp             SSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS--CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             cCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC--ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeE
Confidence            3446789999999888888887777888876211110  0001100  0  11234578999999654 45555567778


Q ss_pred             EEEecCccccccCCCCcccccccc--ccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcC
Q 013578          324 RVWNINVRYHLDEDPKTLKVLPIP--LLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVE  384 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~  384 (440)
                      ..+|.... .+       ..+.+.  ..........-..++|.++|.+.+++..+.++.|...
T Consensus       198 ~~~d~~g~-~~-------~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          198 QEVTLVGE-VI-------GEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             EEECTTCC-EE-------EEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC-
T ss_pred             EEEcCCCC-EE-------EEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEec
Confidence            88887643 11       111111  0000011123446999999998888877888887654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.52  E-value=5.5e-05  Score=70.80  Aligned_cols=54  Identities=19%  Similarity=0.074  Sum_probs=37.1

Q ss_pred             CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ++.|..||..+|+.+.+..  +..++..-.....+        .+++.|+.||.++.||.++++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tag--------glvf~g~~dg~l~A~D~~tG~  518 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHK--EHLPLWAGVLATAG--------NLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEE--ESSCCCSCCEEETT--------TEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEECCCCCEEEEec--CCCCCcccceEeCC--------CEEEEECCCCcEEEEECCCCC
Confidence            4789999999999887663  22222211111122        478889999999999999887

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.51  E-value=4.8e-05  Score=62.36  Aligned_cols=207  Identities=12%  Similarity=0.157  Sum_probs=121.9

Q ss_pred             cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeee
Q 013578          212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  290 (440)
                      +.+.|++..++++...++.|...|.. ++.++.+... ....-.+++.+++.++++.-.++.+.++++.....  .....
T Consensus        32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~--i~~~~  108 (255)
T 3qqz_A           32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE--VKILK  108 (255)
T ss_dssp             EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC--EEEEE
T ss_pred             eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe--eeeee
Confidence            34467766577777788999999998 8888877532 24567788888887666655667888888754331  11111


Q ss_pred             eee-ee--eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578          291 SVM-QL--KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       291 ~~~-~~--~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  367 (440)
                      ... .+  .........|+|+|.+..|+++.......+|.++.  ....  ........+..........+..+++.|..
T Consensus       109 ~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g--~~~~--~~l~i~~~~~~~~~~~~~d~S~l~~dp~t  184 (255)
T 3qqz_A          109 KIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG--LLSS--NELHISKDKALQRQFTLDDVSGAEFNQQK  184 (255)
T ss_dssp             EEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES--TTCS--SCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred             eeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc--cccC--CceeeecchhhccccccCCceeEEEcCCC
Confidence            111 11  12345578999999998887777666666776651  1000  01111110000011112346789999875


Q ss_pred             C-EEEEec-CCEEEEEEcCCccchhhh--hccc------cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          368 K-ILAATH-GSTLQWLSVETGKVLDTA--EKAH------EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       368 ~-~l~~~~-~~~i~i~d~~~~~~~~~~--~~~h------~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      . +++.++ .+.|..+|.. |+.+..+  ..+.      -.....|+|.++|        +++++ ++-+.++++.-.
T Consensus       185 g~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G--------~lyIv-sE~n~~y~f~~~  252 (255)
T 3qqz_A          185 NTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG--------NIYIV-SEPNRFYRFTPQ  252 (255)
T ss_dssp             TEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC--------CEEEE-ETTTEEEEEEC-
T ss_pred             CeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC--------CEEEE-cCCceEEEEEec
Confidence            4 444444 6788888865 4443322  1111      1257899999998        65554 777766666543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.51  E-value=2.2e-05  Score=63.92  Aligned_cols=140  Identities=6%  Similarity=-0.121  Sum_probs=84.0

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee--cc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK--GH  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~h  298 (440)
                      +.+..-.++.+.+||..+.+.+.++..... -..+  .++++.|+.+..+++|.++|..+.+        .+..+.  .+
T Consensus       108 Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~--------v~~~I~V~~~  176 (268)
T 3nok_A          108 LYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGL--CYWNGKLVRSDGGTMLTFHEPDGFA--------LVGAVQVKLR  176 (268)
T ss_dssp             EEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCE--EEETTEEEEECSSSEEEEECTTTCC--------EEEEEECEET
T ss_pred             EEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEE--ecCCCEEEEECCCCEEEEEcCCCCe--------EEEEEEeCCC
Confidence            444555788899999999999999876432 2333  3678888888778889999865443        222221  12


Q ss_pred             c---cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEe
Q 013578          299 K---SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAAT  373 (440)
Q Consensus       299 ~---~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~  373 (440)
                      .   ..++.+.|. +|+.++..-.+..|.+.|.++++.+....-.. ..+...........-.+.+|++|+++ ++++|
T Consensus       177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~-L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASA-LTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHH-HHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCC-CcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            1   245677776 67655555567899999998876543211100 00000000111123367899999866 44555

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.50  E-value=0.0004  Score=60.59  Aligned_cols=184  Identities=9%  Similarity=-0.072  Sum_probs=104.9

Q ss_pred             EEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      +++-...+.|+.+++........+.........+++++.+..|+.. ...+.|.+.++....        ....+.....
T Consensus        88 y~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--------~~~l~~~~l~  159 (349)
T 3v64_C           88 FWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--------RKVLLWQSLE  159 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CEEEECTTCS
T ss_pred             EEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--------eEEEEeCCCC
Confidence            3333445667777776554333333333445788999865555544 456778888764322        1111222334


Q ss_pred             ceEEEEEcCCCCEEE-EEeCC-CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CC
Q 013578          301 AVTWLCFAPNSEQII-TASKD-GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GS  376 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~-s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~  376 (440)
                      ....++++|.+..|+ +-..+ +.|..+++......        .+    .  .........++++|++..|..++  .+
T Consensus       160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--------~~----~--~~~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--------II----A--DTHLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--------ES----C--CSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE--------EE----E--ECCCCCcceEEEeCCCCEEEEEECCCC
Confidence            578999999665554 44444 77888887642110        00    0  00112245799998777666554  67


Q ss_pred             EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      .|..++.........+ .........+++..+         .++++-...+.|..++..++
T Consensus       226 ~I~~~~~dG~~~~~~~-~~~~~~P~giav~~~---------~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          226 VIERANLDGSHRKAVI-SQGLPHPFAITVFED---------SLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             EEEEEETTSCSCEEEE-CSSCSSEEEEEEETT---------EEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEeCCCCceEEEE-eCCCCCceEEEEECC---------EEEEecCCCCeEEEEEccCC
Confidence            8999998653322222 223445677887433         56666666788888775444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.44  E-value=0.00012  Score=62.66  Aligned_cols=92  Identities=12%  Similarity=0.138  Sum_probs=55.4

Q ss_pred             eEEEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEE
Q 013578          302 VTWLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQ  379 (440)
Q Consensus       302 v~~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~  379 (440)
                      ...+  +|++++|+.+ ...+.|..+++.....+    .....+.    ..    .....++++++|+++++.. .+.|.
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~----~~~~~~~----~~----~~P~gi~vd~dG~l~va~~~~~~V~  236 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP----GEPEIFV----EQ----TNIDDFAFDVEGNLYGATHIYNSVV  236 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB----CCCEEEE----ES----CCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC----CccEEEe----cc----CCCCCeEECCCCCEEEEeCCCCeEE
Confidence            4555  7888766544 46778999998741111    0011100    00    1234699999998766644 68899


Q ss_pred             EEEcCCccc--hhhhhccccCCeEEEEec---CCC
Q 013578          380 WLSVETGKV--LDTAEKAHEGEITCMAWA---PKT  409 (440)
Q Consensus       380 i~d~~~~~~--~~~~~~~h~~~v~~v~~~---~~~  409 (440)
                      +++.. ++.  +..+. ......++++|.   |++
T Consensus       237 ~~~~~-G~~~~~~~~~-~~~~~p~~~a~~g~~~d~  269 (306)
T 2p4o_A          237 RIAPD-RSTTIIAQAE-QGVIGSTAVAFGQTEGDC  269 (306)
T ss_dssp             EECTT-CCEEEEECGG-GTCTTEEEEEECCSTTTT
T ss_pred             EECCC-CCEEEEeecc-cccCCceEEEEecccCCC
Confidence            99975 654  22332 233568999998   775

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.44  E-value=5.7e-05  Score=60.95  Aligned_cols=141  Identities=10%  Similarity=-0.032  Sum_probs=83.6

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec--c
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG--H  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--h  298 (440)
                      +....-.++.+.+||..+.+.+.++...... .  .+.++++.|+.+..+++|.++|..+.+        .+..+.-  +
T Consensus        77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-w--glt~dg~~L~vSdgs~~l~~iDp~t~~--------~~~~I~V~~~  145 (243)
T 3mbr_X           77 LIQLTWRNHEGFVYDLATLTPRARFRYPGEG-W--ALTSDDSHLYMSDGTAVIRKLDPDTLQ--------QVGSIKVTAG  145 (243)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEEECSSCC-C--EEEECSSCEEEECSSSEEEEECTTTCC--------EEEEEECEET
T ss_pred             EEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-e--EEeeCCCEEEEECCCCeEEEEeCCCCe--------EEEEEEEccC
Confidence            4444566888999999999999998764422 3  344678888888788889999875443        2222221  1


Q ss_pred             c---cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578          299 K---SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH  374 (440)
Q Consensus       299 ~---~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  374 (440)
                      .   ..++.+.+. +|+.++..-.+..|.+.|.++++.+....-.. ..+...........-.+.++++|+++.|.+..
T Consensus       146 g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~-l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          146 GRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQA-LVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGG-GSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCc-CccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            1   345667765 66655555467799999998876542211000 00000000011122467899999876555443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.43  E-value=0.00033  Score=68.78  Aligned_cols=195  Identities=11%  Similarity=0.060  Sum_probs=116.0

Q ss_pred             EEEeeCCceEEEEeCCCCceeeeeeC-------CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee--
Q 013578          222 IASCSEGTDISIWHGKTGKLLGNVDT-------NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV--  292 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--  292 (440)
                      +..++.++-|..||..+++.......       ....|.++...++|.+. +|+.+ -|.+||.....   .......  
T Consensus       228 lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~---~~~~~~~~~  302 (795)
T 4a2l_A          228 IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDS---FASYSSNPV  302 (795)
T ss_dssp             EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTE---EEEECCCTT
T ss_pred             EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCe---EEEEecCCC
Confidence            34444443388898876654322211       13458888888888754 45555 47888753221   1000000  


Q ss_pred             eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                      ....-....|.++...++|. |..|+.++-|..|+..+....        .+........-....|.++...++|.+.++
T Consensus       303 ~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~--------~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG  373 (795)
T 4a2l_A          303 ENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK--------NIRNIPYKNSLSDNVVSCIVEDKDKNLWIG  373 (795)
T ss_dssp             STTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE--------EECCCTTSSSCSCSSEEEEEECTTSCEEEE
T ss_pred             CCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce--------EEcCCCCCCCCCCCeeEEEEECCCCCEEEE
Confidence            00011235799999998887 566777778999987643211        000000001112334888999999998887


Q ss_pred             ecCCEEEEEEcCCccchhhhhc-------cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          373 THGSTLQWLSVETGKVLDTAEK-------AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       373 ~~~~~i~i~d~~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ..++.|..|+..+++.......       -....|.++...+++        .+|..|+.++-|.+|+..+++
T Consensus       374 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--------~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          374 TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK--------SLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT--------TEEEEEETTTEEEEEETTTCC
T ss_pred             ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC--------CEEEEEeCcCceeEEeCCCCc
Confidence            7788899999887754322110       123578999988886        536777777778888877653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.42  E-value=0.0014  Score=64.35  Aligned_cols=291  Identities=8%  Similarity=0.026  Sum_probs=158.2

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec-----CCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN-----LPPGGPPTAVAFADNATSIVVATHNLSGCSL  165 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~  165 (440)
                      ...|.++...++|.+.+ |..+| |.+|+..+....   .....     .-....|.++...++|..- +++.+   ..+
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~---~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~---~Gl  332 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFA---SYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYF---GGL  332 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEE---EECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESS---SCE
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEE---EEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECC---CCe
Confidence            35799999998887555 44454 888887654311   11100     1123567888888877644 34433   123


Q ss_pred             Eeecccccccc-ccc-cccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          166 YMYGEEKAIST-NEG-KQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       166 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                      ..++....... ... .....+.            .. .+.      +++...+|.  +..|+.++-|..|+..+++...
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~l~------------~~-~V~------~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~  391 (795)
T 4a2l_A          333 NYYHPIRNRFKNIRNIPYKNSLS------------DN-VVS------CIVEDKDKN--LWIGTNDGGLNLYNPITQRFTS  391 (795)
T ss_dssp             EEECGGGGSSEEECCCTTSSSCS------------CS-SEE------EEEECTTSC--EEEEESSSCEEEECTTTCCEEE
T ss_pred             EEeCCCcccceEEcCCCCCCCCC------------CC-eeE------EEEECCCCC--EEEEECCCCeEEEcCCCCcEEE
Confidence            33332221100 000 0000000            00 011      111234554  5557777669999988765433


Q ss_pred             eeeC--------CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578          244 NVDT--------NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII  315 (440)
Q Consensus       244 ~~~~--------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  315 (440)
                      ....        ....|.++...++|+.|.+|+.++-|..||...+.   ....... .-......|.++...++|.+.+
T Consensus       392 ~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~---~~~~~~~-~~~l~~~~v~~i~~d~~g~lwi  467 (795)
T 4a2l_A          392 YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ---VENFNQR-NSQLVNENVYAILPDGEGNLWL  467 (795)
T ss_dssp             ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC---EEEECTT-TSCCSCSCEEEEEECSSSCEEE
T ss_pred             EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc---EEEeecC-CCCcCCCeeEEEEECCCCCEEE
Confidence            2211        23467888888888857778877778888864332   1111000 0001345789999988887544


Q ss_pred             EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhh---
Q 013578          316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTA---  392 (440)
Q Consensus       316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~---  392 (440)
                       |+. +-+.+||..++.....        ........-....|.++...++|.+.+++. +.|..||..+++. ...   
T Consensus       468 -gt~-~Gl~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~  535 (795)
T 4a2l_A          468 -GTL-SALVRFNPEQRSFTTI--------EKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASIL  535 (795)
T ss_dssp             -EES-SCEEEEETTTTEEEEC--------CBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCS
T ss_pred             -Eec-CceeEEeCCCCeEEEc--------cccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCC
Confidence             444 4588898875432110        000000011124578899999999887766 6688888877664 110   


Q ss_pred             --hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          393 --EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       393 --~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                        .......|.++...+++        .+.+ |+.. -+..|+..+.
T Consensus       536 ~~~~l~~~~i~~i~~d~~g--------~lWi-gT~~-Gl~~~d~~~~  572 (795)
T 4a2l_A          536 PVSNVTKLFTNCIYEASNG--------IIWV-GTRE-GFYCFNEKDK  572 (795)
T ss_dssp             CSCGGGGSCEEEEEECTTS--------CEEE-EESS-CEEEEETTTT
T ss_pred             CCCCCCCCeeEEEEECCCC--------CEEE-EeCC-CceeECCCCC
Confidence              01234579999998887        4444 4444 4777776543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=0.00048  Score=61.91  Aligned_cols=157  Identities=8%  Similarity=0.041  Sum_probs=93.1

Q ss_pred             ceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc--ceEEeec
Q 013578           93 SVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG--CSLYMYG  169 (440)
Q Consensus        93 ~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~--~~~~~~~  169 (440)
                      ....|+++| ++..|..+...+.|+.+|+......      ...........++|++++++|+++......  ..+....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~------~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS------TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE------EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE------EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence            567899998 4556666655578888888764311      112234668899999999977776643211  1122222


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC-CCCeEEEEeeCCceEEEEeCCCCceeeeeeC-
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA-DGSTIIASCSEGTDISIWHGKTGKLLGNVDT-  247 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-  247 (440)
                      ......                       ....+.....+..+.+.+ ++. ++++-..++.|..++...+........ 
T Consensus       212 ~~g~~~-----------------------~~~~l~~~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~~  267 (430)
T 3tc9_A          212 RESGFK-----------------------VITELTKGQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTIQ  267 (430)
T ss_dssp             GGGTSC-----------------------SEEEEEECSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             CCCcee-----------------------eeeeeccCCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEcC
Confidence            111100                       001111223344555677 454 666666778899999886654222222 


Q ss_pred             CCCcccEEEecCCCCeEEEEe-cCCCEEEEEeE
Q 013578          248 NQLKNNMAAISPNGRFLAAAA-FTADVKVWEIV  279 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~  279 (440)
                      .......++++|+|++|+++. ..+.|..++..
T Consensus       268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            123457899999999666654 56778888865

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.37  E-value=0.001  Score=59.78  Aligned_cols=203  Identities=15%  Similarity=0.112  Sum_probs=112.9

Q ss_pred             cceeEEEEccC--CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC--cceEEe
Q 013578           92 DSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS--GCSLYM  167 (440)
Q Consensus        92 ~~V~~l~~s~d--g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~--~~~~~~  167 (440)
                      .....|+|+|+  +..|..+...+.|+.++..++..      .........+..++|+++++ |+++.....  ...+..
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v------~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~  211 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV------DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYL  211 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE------EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE------EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEE
Confidence            35679999985  34455554448899999865532      12223345688999999999 554443210  111211


Q ss_pred             eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC-CCCeEEEEeeCCceEEEEeCCCCceeeee-
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA-DGSTIIASCSEGTDISIWHGKTGKLLGNV-  245 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-  245 (440)
                      .......                       ...........+..+.+.+ ++. ++++-..++.|+.+|..++.....+ 
T Consensus       212 ~~~~~~~-----------------------~~~~~~~~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~  267 (433)
T 4hw6_A          212 FTRASGF-----------------------TERLSLCNARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEV  267 (433)
T ss_dssp             ECGGGTT-----------------------CCEEEEEECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEE
T ss_pred             EECCCCe-----------------------eccccccccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEe
Confidence            1111100                       0001112233345556677 454 6666667788999999877662222 


Q ss_pred             eCC-CCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeec---------------cccceEEEEE-
Q 013578          246 DTN-QLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKG---------------HKSAVTWLCF-  307 (440)
Q Consensus       246 ~~~-~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------------h~~~v~~~~~-  307 (440)
                      ... ......++++|++++|+++.. .+.|+.+++..... ...   ....+.+               .-.....+++ 
T Consensus       268 ~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~-~~~---~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~  343 (433)
T 4hw6_A          268 MMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETG-KLA---VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFV  343 (433)
T ss_dssp             ECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTC-CBC---CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEE
T ss_pred             ccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCc-ccC---cEEEEEecCCCCccCCCcccceEEcCCccEEEE
Confidence            211 112236999999996666654 56788877642110 000   0001111               1123567999 


Q ss_pred             --------cCCCCEEEEEeCCCcEEEEecC
Q 013578          308 --------APNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       308 --------~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                              .+++.++++-...+.|+.++..
T Consensus       344 ~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~  373 (433)
T 4hw6_A          344 KNEAYAGEEDEYDFYFCDRDSHTVRVLTPE  373 (433)
T ss_dssp             ECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred             ccccccccCCCCcEEEEECCCCEEEEECCC
Confidence                    7777777776777889998853

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.36  E-value=0.00045  Score=61.17  Aligned_cols=185  Identities=9%  Similarity=-0.066  Sum_probs=105.1

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHK  299 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  299 (440)
                      ++++-...+.|+.+++........+.........+++++.+..|+... ..+.|.+.++....        ....+....
T Consensus       130 ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--------~~~l~~~~l  201 (386)
T 3v65_B          130 VFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--------RKVLLWQSL  201 (386)
T ss_dssp             EEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--------CEEEECSSC
T ss_pred             EEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--------eEEeecCCC
Confidence            333444456677777765543333333333456788988655555544 45667776653221        111122233


Q ss_pred             cceEEEEEcCCCCEEEEEe-CC-CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C
Q 013578          300 SAVTWLCFAPNSEQIITAS-KD-GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G  375 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~  375 (440)
                      .....++++|.+..|+... .+ +.|..+++......        .+    ..  ........++++|++..|..++  .
T Consensus       202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--------~~----~~--~~~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--------II----AD--THLFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--------EE----EC--SSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred             CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE--------EE----EE--CCCCCeeeEEEeCCCCEEEEEECCC
Confidence            5578999999766555444 34 67888887642110        00    00  0111245799998777666544  6


Q ss_pred             CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +.|..++.........+ .........+++..+         .++++-...+.|..++..++
T Consensus       268 ~~I~~~d~dG~~~~~~~-~~~~~~P~giav~~~---------~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          268 HVIERANLDGSHRKAVI-SQGLPHPFAITVFED---------SLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             TEEEEECTTSCSCEEEE-CSSCSSEEEEEEETT---------EEEEEETTTTEEEEEETTTC
T ss_pred             CEEEEEeCCCCeeEEEE-ECCCCCceEEEEECC---------EEEEeeCCCCeEEEEECCCC
Confidence            78999997643322222 223446678888443         57777777888888885444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.33  E-value=3.6e-05  Score=74.74  Aligned_cols=193  Identities=9%  Similarity=0.055  Sum_probs=104.3

Q ss_pred             ccC-CCCCeEEEEeeCC----ceEEEEeCCCC-ceeee-eeCCCCcccEEEecCCCCeEEEEecCC-----CEEEEEeEe
Q 013578          213 YGT-ADGSTIIASCSEG----TDISIWHGKTG-KLLGN-VDTNQLKNNMAAISPNGRFLAAAAFTA-----DVKVWEIVY  280 (440)
Q Consensus       213 ~~~-~~~~~~l~s~~~d----~~i~vwd~~~~-~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~  280 (440)
                      .++ |||+.++++...+    ..|+++|+.++ +.+.. +.   .....++|+|||+.|+....+.     .|+++++..
T Consensus       180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt  256 (751)
T 2xe4_A          180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK  256 (751)
T ss_dssp             EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS
T ss_pred             EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC
Confidence            348 8999666655443    35999999988 63321 21   1245689999999888877652     355555533


Q ss_pred             cCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC---CCcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578          281 SKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK---DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ  357 (440)
Q Consensus       281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (440)
                      +..    ....+... .......++.|+|||++|+..+.   ...|.++|+.++...   . ....+    ..  .....
T Consensus       257 ~~~----~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~---~-~~~~l----~~--~~~~~  321 (751)
T 2xe4_A          257 LQS----EDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH---N-TLEIV----RP--REKGV  321 (751)
T ss_dssp             CGG----GCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC---C-CEEES----SC--CCTTC
T ss_pred             Cch----hcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC---c-eeEEe----ec--CCCCc
Confidence            220    00011111 22345678899999998876553   346788888753100   0 00000    00  11111


Q ss_pred             eeeEEeCCCCCEEEEec-C----CEEEEEEcCCccchhh-hhccccC--CeEEEEecCCCCCCCCCcceEEEEeeCCCeE
Q 013578          358 YDRLSLSSDGKILAATH-G----STLQWLSVETGKVLDT-AEKAHEG--EITCMAWAPKTIPMGNQQVSVLATSSVDKKV  429 (440)
Q Consensus       358 v~~~~~s~~g~~l~~~~-~----~~i~i~d~~~~~~~~~-~~~~h~~--~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i  429 (440)
                      ...+.|+.++.+++.+. +    ..|..+++.++..... +. .|..  .+..+.+..+         .++++...|+..
T Consensus       322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-~~~~~~~l~~~~~~~~---------~lv~~~~~~g~~  391 (751)
T 2xe4_A          322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-DHSEDVFMESIAVRSN---------YLVVAGRRAGLT  391 (751)
T ss_dssp             CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-CCCSSEEEEEEEECSS---------EEEEEEEETTEE
T ss_pred             eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-CCCCCcEEEEEEEECC---------EEEEEEEeCCEE
Confidence            22344433444444443 2    3778888765322222 21 2333  4566666643         677888888876


Q ss_pred             EEEe
Q 013578          430 KLWL  433 (440)
Q Consensus       430 ~vw~  433 (440)
                      ++|-
T Consensus       392 ~l~~  395 (751)
T 2xe4_A          392 RIWT  395 (751)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.28  E-value=0.0015  Score=56.36  Aligned_cols=153  Identities=10%  Similarity=0.133  Sum_probs=81.4

Q ss_pred             ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q 013578          252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR  331 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~  331 (440)
                      +..+.+.+++..++++ .+|.|  |....+.    ..+..+  ..++...+..+++.|++.+++.+...+..+-+|-. +
T Consensus       124 ~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG----~tW~~~--~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G  193 (327)
T 2xbg_A          124 PRLIKALGNGSAEMIT-NVGAI--YRTKDSG----KNWQAL--VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-Q  193 (327)
T ss_dssp             EEEEEEEETTEEEEEE-TTCCE--EEESSTT----SSEEEE--ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-C
T ss_pred             eEEEEEECCCCEEEEe-CCccE--EEEcCCC----CCCEEe--ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-C
Confidence            4456666666655554 45543  3222111    112122  12345578899999988877666443333333321 0


Q ss_pred             ccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhc---cccCCeEEEEecCC
Q 013578          332 YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEK---AHEGEITCMAWAPK  408 (440)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~---~h~~~v~~v~~~~~  408 (440)
                             .......      ......+..+++.+++++++++.+|.+++.+...|+.-..+..   .+...+.++.+.++
T Consensus       194 -------~tW~~~~------~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~  260 (327)
T 2xbg_A          194 -------TAWEPHN------RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP  260 (327)
T ss_dssp             -------SSCEEEE------CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred             -------CceeECC------CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence                   0111110      0112346678899999999888888888765333433222211   13346889999887


Q ss_pred             CCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          409 TIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       409 ~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +        .+++. +.+|.+ .+..+.+
T Consensus       261 ~--------~~~~~-g~~g~i-~~S~DgG  279 (327)
T 2xbg_A          261 N--------EVWLA-GGAGAL-LCSQDGG  279 (327)
T ss_dssp             S--------CEEEE-ESTTCE-EEESSTT
T ss_pred             C--------EEEEE-eCCCeE-EEeCCCC
Confidence            5        55554 457766 3444433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.25  E-value=0.0017  Score=55.77  Aligned_cols=181  Identities=9%  Similarity=-0.073  Sum_probs=100.6

Q ss_pred             eCCceEEEEeCCC----CceeeeeeCCCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          226 SEGTDISIWHGKT----GKLLGNVDTNQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       226 ~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      ...+.|..+++..    ......+.........+++++.+..|+.. ..++.|.++++....        ..........
T Consensus        49 ~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~--------~~~~~~~~~~  120 (316)
T 1ijq_A           49 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--------RKTLFRENGS  120 (316)
T ss_dssp             TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--------EEEEEECTTC
T ss_pred             CCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc--------eEEEEECCCC
Confidence            3345566666554    11112222222345788998755555544 557788888864221        1111222234


Q ss_pred             ceEEEEEcCCCCEEEEEeC-C-CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CC
Q 013578          301 AVTWLCFAPNSEQIITASK-D-GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GS  376 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~  376 (440)
                      ....++++|.+..|+.+.. . +.|...++.....        ..+    ..  ........+++++++..|..++  .+
T Consensus       121 ~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~--------~~~----~~--~~~~~P~gla~d~~~~~lY~~D~~~~  186 (316)
T 1ijq_A          121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------YSL----VT--ENIQWPNGITLDLLSGRLYWVDSKLH  186 (316)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--------EEE----EC--SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--------EEE----EE--CCCCCceEEEEeccCCEEEEEECCCC
Confidence            6789999996665554443 3 6788888753211        000    00  0112345799999877666554  57


Q ss_pred             EEEEEEcCCccchhhhhc--cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          377 TLQWLSVETGKVLDTAEK--AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .|..+|..... ...+..  ........+++..+         .++++-...+.|..++..+++
T Consensus       187 ~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~~---------~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          187 SISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED---------KVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EEEEEETTSCS-CEEEEECTTTTSSEEEEEEETT---------EEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEEecCCCc-eEEEeecCCccCCcEEEEEECC---------EEEEEECCCCeEEEEeCCCCc
Confidence            99999987432 222211  12235677777543         577777778889888876554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.24  E-value=0.00016  Score=62.50  Aligned_cols=194  Identities=8%  Similarity=-0.024  Sum_probs=108.7

Q ss_pred             ccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC--------------------CCCcccEEEecCCCCeEEEEe
Q 013578          209 ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT--------------------NQLKNNMAAISPNGRFLAAAA  268 (440)
Q Consensus       209 ~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--------------------~~~~v~~~~~s~~~~~l~~~~  268 (440)
                      +..+.+.+++. +++++..++.|..|+..+++.. .+..                    ....+..+++++++..|+++.
T Consensus        21 p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           21 PNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCEECCTTCS-SEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            33444466766 5777778889999998765432 2211                    012357789997333455555


Q ss_pred             cCCCEEEEEeEecCCCceeeeeeeeeeec-cccceEEEEEcC-CCCEEEEEeC-----------------CCcEEEEecC
Q 013578          269 FTADVKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAP-NSEQIITASK-----------------DGTLRVWNIN  329 (440)
Q Consensus       269 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p-~~~~l~s~~~-----------------dg~i~iwd~~  329 (440)
                      ..+.|..+|...+.   ....  .....+ .......+++.| +|++.++-..                 ++.|..||..
T Consensus        99 ~~~~i~~~d~~~g~---~~~~--~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           99 CYYHLSVVGSEGGH---ATQL--ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             TTTEEEEECTTCEE---CEEE--ESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             CCCCEEEEeCCCCE---EEEe--cccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            55557777653221   0100  111111 113467899999 8986665432                 3567778775


Q ss_pred             ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccc--hhhhhccccCCeEEEEe
Q 013578          330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKV--LDTAEKAHEGEITCMAW  405 (440)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~  405 (440)
                      ++...        .+..       .......++++++|++|..+.  .+.|++|+......  ...+. ...+ ...+++
T Consensus       174 ~~~~~--------~~~~-------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~~g-P~gi~~  236 (322)
T 2fp8_A          174 TKETT--------LLLK-------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-PGNIKR  236 (322)
T ss_dssp             TTEEE--------EEEE-------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-ECSS-EEEEEE
T ss_pred             CCEEE--------Eecc-------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eCCC-CCCeEE
Confidence            43211        0000       001134689999998666553  68999999875321  11111 1123 778899


Q ss_pred             cCCCCCCCCCcceEEEEeeC----------CCeEEEEeC
Q 013578          406 APKTIPMGNQQVSVLATSSV----------DKKVKLWLA  434 (440)
Q Consensus       406 ~~~~~~~~~~~~~~l~t~~~----------Dg~i~vw~~  434 (440)
                      .+++        +++++...          .+.|..++.
T Consensus       237 d~~G--------~l~va~~~~~~~~~~~~~~~~v~~~d~  267 (322)
T 2fp8_A          237 NADG--------HFWVSSSEELDGNMHGRVDPKGIKFDE  267 (322)
T ss_dssp             CTTS--------CEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred             CCCC--------CEEEEecCcccccccCCCccEEEEECC
Confidence            9987        66665543          355666654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.18  E-value=0.0029  Score=61.96  Aligned_cols=302  Identities=9%  Similarity=0.006  Sum_probs=151.6

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec--CC---CCCCCceEEEcc--CCCeEEEEeecCCcce
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN--LP---PGGPPTAVAFAD--NATSIVVATHNLSGCS  164 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~--~~---~~~~v~~v~~~~--~~~~l~~~~~~~~~~~  164 (440)
                      ..|.+|...++|..|-.|..++-+..||..+..-.   .....  ..   ....|.++....  ++. +.+++..   ..
T Consensus        66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~---~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~---~g  138 (781)
T 3v9f_A           66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFS---VYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYY---RG  138 (781)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEE---EECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESS---SC
T ss_pred             cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEE---eeccccCCCCCcccCcceEEEecCccCCC-EEEEECC---CC
Confidence            45999999888873555667745889998754311   11000  00   113466676665  544 4444422   12


Q ss_pred             EEeecccccccc-ccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578          165 LYMYGEEKAIST-NEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG  243 (440)
Q Consensus       165 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  243 (440)
                      +..++....... ........++            . ..+..      ++...+|  .+..++.++-|..||..+++...
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~l~------------~-~~i~~------i~~d~~g--~lwigt~~~Gl~~~~~~~~~~~~  197 (781)
T 3v9f_A          139 IEYLDIATGKFTHYNKSTVPALP------------S-EQTWT------ATEAEDG--KLYIGHVEGGLSILSLNDKSVKH  197 (781)
T ss_dssp             EEEEETTTTEEEEESTTTCTTCS------------C-CCEEE------EEEEETT--EEEEEETTTEEEEEETTTTEEEE
T ss_pred             eeEEECCCCeEEeeccCcccCCC------------c-cceEE------EEECCCC--CEEEEecCCCeEEEcCCCCceEe
Confidence            333332221100 0000000000            0 00111      1112234  34556666458899988765432


Q ss_pred             eee-------CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee--eeccccceEEEEEcCCCCEE
Q 013578          244 NVD-------TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ--LKGHKSAVTWLCFAPNSEQI  314 (440)
Q Consensus       244 ~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l  314 (440)
                      ...       .....|.++...++|.+.+ |+.+ -+.+||.....   .........  .......|.++...++|. |
T Consensus       198 ~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~---~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-l  271 (781)
T 3v9f_A          198 FVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTET---FTNFHNNPGNIHGALSSYIFSIKQLKDNK-L  271 (781)
T ss_dssp             ECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTE---EEC-----------CCCCEEEEEECTTSE-E
T ss_pred             eecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCc---EEEEEcCCCccccccCceEEEEEECCCCC-E
Confidence            111       1134578888888877554 4545 57788753221   110000000  011245699999888776 5


Q ss_pred             EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhh--
Q 013578          315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTA--  392 (440)
Q Consensus       315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~--  392 (440)
                      ..|+..+-|.++|..+.............+........-....|.++...++|.+.++..++.|..++..++......  
T Consensus       272 Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~  351 (781)
T 3v9f_A          272 WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYS  351 (781)
T ss_dssp             EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC--
T ss_pred             EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccC
Confidence            556664678888887543211000000000000000111234588899999999888777888888888765432211  


Q ss_pred             ------hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          393 ------EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       393 ------~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                            .......|.++...+++         .|..|+.++-|..|+..+
T Consensus       352 ~~~~~~~~l~~~~v~~i~~d~~g---------~lWigt~~~Gl~~~~~~~  392 (781)
T 3v9f_A          352 PTQMNESSLSNKVVSSVCDDGQG---------KLWIGTDGGGINVFENGK  392 (781)
T ss_dssp             --CCCSSCCSSSCEEEEEECTTS---------CEEEEEBSSCEEEEETTE
T ss_pred             ccccccCCCCCcceEEEEEcCCC---------CEEEEeCCCcEEEEECCC
Confidence                  01123569999998876         455666566677777653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.14  E-value=0.0068  Score=59.33  Aligned_cols=297  Identities=8%  Similarity=0.015  Sum_probs=152.2

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe--cCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI--NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      ..|.++...++|.+.+.. .+ -+.+||..+...........  .......|.++...+++... +++...   .+..++
T Consensus       211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~---Gl~~~~  284 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELN---GIMILD  284 (781)
T ss_dssp             SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSS---CEEEEE
T ss_pred             CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCC---CeEEEC
Confidence            568899998888766543 44 48888876543211100000  01123567788877766543 444321   233333


Q ss_pred             ccccccccccc-ccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee--
Q 013578          170 EEKAISTNEGK-QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD--  246 (440)
Q Consensus       170 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--  246 (440)
                      ........... ....+...   -......... +.      .++...+|.  +-.|+.++-|..++..+........  
T Consensus       285 ~~~~~~~~~~~~~f~~~~~~---~~~~~l~~~~-v~------~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~  352 (781)
T 3v9f_A          285 LQQNQFLLPEQIRFEFIREG---DNNYSLSNAS-AR------YIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSP  352 (781)
T ss_dssp             TTCC---------CEEECBC---SSTTSBSSSC-EE------EEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC---
T ss_pred             CCCCeeeeeeccccccccCC---CCCCCCCCCe-EE------EEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCc
Confidence            22211000000 00000000   0000000000 11      112234454  5556656669999887654322110  


Q ss_pred             -------CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee-eeeccccceEEEEEcCCCCEEEEEe
Q 013578          247 -------TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM-QLKGHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       247 -------~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                             .....|.++...++|+ |.+|+.++-|..||.....      ..... ........|.++...+++. |..|+
T Consensus       353 ~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~------~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt  424 (781)
T 3v9f_A          353 TQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRV------AIYNKENRELLSNSVLCSLKDSEGN-LWFGT  424 (781)
T ss_dssp             -CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEE------EECC-----CCCSBEEEEEECTTSC-EEEEE
T ss_pred             cccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCe------EEEccCCCCCCCcceEEEEECCCCC-EEEEe
Confidence                   1234578888887776 4566766678888864322      00000 0012346789999887776 44567


Q ss_pred             CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhc----
Q 013578          319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEK----  394 (440)
Q Consensus       319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~----  394 (440)
                      .++-+..+|.+++....        +...    ......|.++...++|.+.++.. +.|..||..+++.......    
T Consensus       425 ~~~Gl~~~~~~~~~~~~--------~~~~----~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~  491 (781)
T 3v9f_A          425 YLGNISYYNTRLKKFQI--------IELE----KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQ  491 (781)
T ss_dssp             TTEEEEEECSSSCEEEE--------CCST----TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSS
T ss_pred             ccCCEEEEcCCCCcEEE--------eccC----CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccc
Confidence            66778888876543211        0000    11224577888888998777666 6799999887764332110    


Q ss_pred             cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       395 ~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      .....|.++...+++        . |..|+.++-+..|+..+
T Consensus       492 ~~~~~i~~i~~d~~g--------~-lWigt~~~Gl~~~~~~~  524 (781)
T 3v9f_A          492 LLENFVRSIAQDSEG--------R-FWIGTFGGGVGIYTPDM  524 (781)
T ss_dssp             CSCSCEEEEEECTTC--------C-EEEEESSSCEEEECTTC
T ss_pred             cccceeEEEEEcCCC--------C-EEEEEcCCCEEEEeCCC
Confidence            113578999998886        4 44455533466677654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.12  E-value=0.0031  Score=54.01  Aligned_cols=184  Identities=10%  Similarity=-0.054  Sum_probs=104.9

Q ss_pred             EEeeCCceEEEEeCCCCcee-eeeeCCCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          223 ASCSEGTDISIWHGKTGKLL-GNVDTNQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      .+-...+.|..+++..+... ..+.........+++.+.+..|+.. ...+.|.++++....        ..........
T Consensus        51 w~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--------~~~l~~~~~~  122 (318)
T 3sov_A           51 WSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--------RKVLFWQELD  122 (318)
T ss_dssp             EEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CEEEECSSCS
T ss_pred             EEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--------EEEEEeCCCC
Confidence            33344556777776544211 1122222345678898755555444 456778888864322        1111222335


Q ss_pred             ceEEEEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CC
Q 013578          301 AVTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GS  376 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~  376 (440)
                      ....++++|.+..|+.+.  ..+.|...++.....        ..+    ..  .....-..+++++++..|..++  .+
T Consensus       123 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------~~~----~~--~~l~~Pnglavd~~~~~lY~aD~~~~  188 (318)
T 3sov_A          123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--------FII----IN--SEIYWPNGLTLDYEEQKLYWADAKLN  188 (318)
T ss_dssp             SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC--------EEE----EC--SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe--------EEE----EE--CCCCCccEEEEeccCCEEEEEECCCC
Confidence            578999999766555554  357788887763211        000    00  0112235799999777666554  68


Q ss_pred             EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .|..+|..... ...+..+.......+++..+         .++.+-...+.|..++..+++
T Consensus       189 ~I~~~d~dG~~-~~~~~~~~~~~P~glav~~~---------~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          189 FIHKSNLDGTN-RQAVVKGSLPHPFALTLFED---------ILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EEEEEETTSCS-CEEEECSCCSCEEEEEEETT---------EEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEcCCCCc-eEEEecCCCCCceEEEEeCC---------EEEEEecCCCeEEEEECCCCC
Confidence            99999986433 22222223455677877654         567776677888888886654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.11  E-value=0.0014  Score=56.02  Aligned_cols=198  Identities=14%  Similarity=0.115  Sum_probs=109.5

Q ss_pred             cccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC--EEEEEeEecCCCcee
Q 013578          210 SATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVK  287 (440)
Q Consensus       210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~  287 (440)
                      ..+.+.++++ ++++...++.|..||... +....+.. ......++++++|+++++......  |..+|...++   ..
T Consensus        35 egia~~~~g~-lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~---~~  108 (306)
T 2p4o_A           35 ENLASAPDGT-IFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT---VE  108 (306)
T ss_dssp             EEEEECTTSC-EEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC---EE
T ss_pred             ceEEECCCCC-EEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe---EE
Confidence            3445567777 667766788899999774 44333333 345788999999996655443333  5445532221   11


Q ss_pred             eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccc-ccc-CCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578          288 AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY-HLD-EDPKTLKVLPIPLLDSNGATLQYDRLSLSS  365 (440)
Q Consensus       288 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  365 (440)
                         .+..+. .......++..+++..+++-..++.|.++|...+. .+. ....    ..  .............+  ++
T Consensus       109 ---~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~----~~--~~~~~~~~~~pngi--s~  176 (306)
T 2p4o_A          109 ---TLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM----LA--RSNSESVFPAANGL--KR  176 (306)
T ss_dssp             ---EEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG----GS--CSSTTCCSCSEEEE--EE
T ss_pred             ---EEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCc----cc--cccccCCCCcCCCc--Cc
Confidence               111111 12223455555655555555568888888876431 110 0000    00  00000001112234  78


Q ss_pred             CCCEEEEec--CCEEEEEEcCC-ccch--hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          366 DGKILAATH--GSTLQWLSVET-GKVL--DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       366 ~g~~l~~~~--~~~i~i~d~~~-~~~~--~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      +++.|..++  .+.|..|+... ++.-  ..+  ........+++++++        +++++....+.|.+++..
T Consensus       177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~--~~~~~P~gi~vd~dG--------~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF--VEQTNIDDFAFDVEG--------NLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE--EESCCCSSEEEBTTC--------CEEEECBTTCCEEEECTT
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE--eccCCCCCeEECCCC--------CEEEEeCCCCeEEEECCC
Confidence            888666654  68999999875 4321  111  112345678888887        777777777889998865

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.10  E-value=0.0044  Score=55.07  Aligned_cols=159  Identities=10%  Similarity=-0.051  Sum_probs=92.3

Q ss_pred             CCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-C-CCcEEE
Q 013578          249 QLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-K-DGTLRV  325 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~-dg~i~i  325 (440)
                      ......+++.+.+..|+.. ...+.|.+.++....        ....+.........|+++|.+.+|+... . .+.|..
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~--------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~  229 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK  229 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS--------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEE
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc--------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEE
Confidence            3446678888855445444 456777777764221        1111222334578999999666555444 2 367888


Q ss_pred             EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhh-ccccCCeEE
Q 013578          326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAE-KAHEGEITC  402 (440)
Q Consensus       326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~-~~h~~~v~~  402 (440)
                      .++......        .+    ..  ........+++++++..|..++  .+.|..+|.........+. .........
T Consensus       230 ~~~dG~~~~--------~~----~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~g  295 (400)
T 3p5b_L          230 GGLNGVDIY--------SL----VT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS  295 (400)
T ss_dssp             EETTSCSCE--------EE----EC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEE
T ss_pred             EeCCCCccE--------EE----EE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEE
Confidence            887643210        00    00  1112345799998877776654  6789999986543322221 012345667


Q ss_pred             EEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          403 MAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       403 v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +++..+         .++++-...+.|..++..+++
T Consensus       296 l~v~~~---------~lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          296 LAVFED---------KVFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             EEEETT---------EEEEEESSSCSEEEEESSSCC
T ss_pred             EEEeCC---------EEEEecCCCCeEEEEEcCCCC
Confidence            777544         577777777888888865553

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.04  E-value=0.0037  Score=54.46  Aligned_cols=144  Identities=10%  Similarity=-0.022  Sum_probs=76.8

Q ss_pred             eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-C-CCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578          226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-T-ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT  303 (440)
Q Consensus       226 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~  303 (440)
                      ...+.|.+.++........+.........++++|.+..|+.... . +.|..+++....        ........-....
T Consensus       135 ~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--------~~~~~~~~~~~Pn  206 (349)
T 3v64_C          135 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--------RRIIADTHLFWPN  206 (349)
T ss_dssp             TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--------CEESCCSSCSCEE
T ss_pred             CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--------cEEEEECCCCCcc
Confidence            33445666665533222222223345678999997666666554 3 556666653221        1111112234568


Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEE
Q 013578          304 WLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWL  381 (440)
Q Consensus       304 ~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~  381 (440)
                      .|+++|++..|+.+ ...+.|..+|+......       ...    .....+   ...+++. .+.++.+ ...+.|..+
T Consensus       207 Gla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-------~~~----~~~~~~---P~giav~-~~~ly~td~~~~~V~~~  271 (349)
T 3v64_C          207 GLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-------AVI----SQGLPH---PFAITVF-EDSLYWTDWHTKSINSA  271 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCE-------EEE----CSSCSS---EEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             eEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-------EEE----eCCCCC---ceEEEEE-CCEEEEecCCCCeEEEE
Confidence            99999876666544 45678999998642110       000    001112   2356663 3333333 346888888


Q ss_pred             EcCCccchhhh
Q 013578          382 SVETGKVLDTA  392 (440)
Q Consensus       382 d~~~~~~~~~~  392 (440)
                      +..+|+....+
T Consensus       272 ~~~~G~~~~~i  282 (349)
T 3v64_C          272 NKFTGKNQEII  282 (349)
T ss_dssp             ETTTCCSCEEE
T ss_pred             EccCCCccEEe
Confidence            87777765555

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.01  E-value=0.00051  Score=65.68  Aligned_cols=241  Identities=10%  Similarity=0.008  Sum_probs=119.0

Q ss_pred             cceeEEEEccCCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee-cCC--cceEEe
Q 013578           92 DSVTGLCFSSDGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH-NLS--GCSLYM  167 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-~~~--~~~~~~  167 (440)
                      ....++++..+|++++.|+. ++.+.+||..+..-   .... .......-.+++..++++.++.++. ++.  ...+.+
T Consensus       243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W---~~~~-~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~  318 (656)
T 1k3i_A          243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW---IPGP-DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV  318 (656)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE---EECC-CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred             CccccccCCCCCCEEEeCCCCCCceEEecCcCCce---eECC-CCCccccccceEEecCCeEEEEeCcccCCcccccceE
Confidence            33445788889999999984 46899999876531   1111 1122223345667778988888873 321  134455


Q ss_pred             eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC---------CceEEEEeCCC
Q 013578          168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE---------GTDISIWHGKT  238 (440)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---------d~~i~vwd~~~  238 (440)
                      |+.....                 |..........+..  ......+..++. +++.++.         ...+..||..+
T Consensus       319 yd~~t~~-----------------W~~~~~~~~~p~~~--~~~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~  378 (656)
T 1k3i_A          319 YSPSSKT-----------------WTSLPNAKVNPMLT--ADKQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSG  378 (656)
T ss_dssp             EETTTTE-----------------EEEETTSCSGGGCC--CCTTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECST
T ss_pred             eCCCCCc-----------------ceeCCCcccccccc--ccccceeecCCc-eEEEECCCCcEEEecCccceeeeecCC
Confidence            5544322                 11100000000000  000011123333 3333332         34578888887


Q ss_pred             CceeeeeeCCCC---------cccEEEec-CCCCeEEEEecCC-----------CEEEEEeEecCCCceeeeeeeeeeec
Q 013578          239 GKLLGNVDTNQL---------KNNMAAIS-PNGRFLAAAAFTA-----------DVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       239 ~~~~~~~~~~~~---------~v~~~~~s-~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                      ............         .-.++.+. .+++++++|+.++           .|.+||.....      +..+..-..
T Consensus       379 ~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~------W~~~~~~~m  452 (656)
T 1k3i_A          379 SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP------NTVFASNGL  452 (656)
T ss_dssp             TCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC------EEEECTTCC
T ss_pred             cceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC------eeEEccCCC
Confidence            654433222111         12333443 4788888887543           45566543221      111110011


Q ss_pred             cccc-eEEEEEcCCCCEEEEEeCC-----------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578          298 HKSA-VTWLCFAPNSEQIITASKD-----------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS  365 (440)
Q Consensus       298 h~~~-v~~~~~~p~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  365 (440)
                      +... -.++...|+++.++.|+.+           ..+.+||..+.....        +.........|    ....+.+
T Consensus       453 p~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~--------~~~~~~~R~~h----s~a~ll~  520 (656)
T 1k3i_A          453 YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK--------QNPNSIVRVYH----SISLLLP  520 (656)
T ss_dssp             SSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE--------CCCCSSCCCTT----EEEEECT
T ss_pred             CCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee--------cCCCCCccccc----cHhhcCC
Confidence            1222 2345667899999999864           468899987654221        10001111122    2355679


Q ss_pred             CCCEEEEec
Q 013578          366 DGKILAATH  374 (440)
Q Consensus       366 ~g~~l~~~~  374 (440)
                      +|++++.|+
T Consensus       521 dg~v~v~GG  529 (656)
T 1k3i_A          521 DGRVFNGGG  529 (656)
T ss_dssp             TSCEEEEEC
T ss_pred             CcEEEecCC
Confidence            999988876

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.00  E-value=0.0058  Score=52.67  Aligned_cols=157  Identities=10%  Similarity=0.054  Sum_probs=89.2

Q ss_pred             CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578          249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI  328 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~  328 (440)
                      ...+..+++.+++.+++++ .+|.+..-+  ... +  ..+..+.  ......+..+.+.+++..+ ..+.+|.+++.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~g-~~G~~~~S~--d~g-G--~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~  232 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVS-SRGSFYSTW--EPG-Q--TAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDP  232 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEE-TTSSEEEEE--CTT-C--SSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEET
T ss_pred             CcceEEEEEcCCCcEEEEE-CCCcEEEEe--CCC-C--CceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecC
Confidence            3457788899988877665 456554321  110 0  1111111  2345678889999988755 5556788777643


Q ss_pred             CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhc--cccCCeEEEEec
Q 013578          329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEK--AHEGEITCMAWA  406 (440)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~--~h~~~v~~v~~~  406 (440)
                      ..+..-       .....+.   ......+..+++.+++.+++++.++.+ ++....|+.-..+..  .....+.++.|.
T Consensus       233 D~G~tW-------~~~~~~~---~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~  301 (327)
T 2xbg_A          233 DNSENW-------GELLSPL---RRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF  301 (327)
T ss_dssp             TEEEEE-------CCCBCTT---SSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred             CCCCee-------EeccCCc---ccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence            212111       0000000   001123677889999999999888877 344444443322211  234568889997


Q ss_pred             CCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          407 PKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      +++         .++.++.+|.|.-++-
T Consensus       302 ~~~---------~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          302 SPD---------QGFILGQKGILLRYVT  320 (327)
T ss_dssp             ETT---------EEEEECSTTEEEEECC
T ss_pred             CCC---------ceEEEcCCceEEEEcC
Confidence            654         5667778998877654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.99  E-value=0.0054  Score=52.53  Aligned_cols=148  Identities=12%  Similarity=-0.019  Sum_probs=79.5

Q ss_pred             EEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      ++-...+.|.++++........+.........++++|.+..|+....  .+.|..+++....        ........-.
T Consensus        95 ~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--------~~~~~~~~l~  166 (318)
T 3sov_A           95 WTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS--------RFIIINSEIY  166 (318)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS--------CEEEECSSCS
T ss_pred             EEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC--------eEEEEECCCC
Confidence            33334455777776533222222233345678999987777776653  4566666653211        0111112224


Q ss_pred             ceEEEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEE
Q 013578          301 AVTWLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ  379 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~  379 (440)
                      ....|+++|++..|+.+ +..+.|..+|+.....        +.+   ......+   ...+++..++-|.+-...+.|.
T Consensus       167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~--------~~~---~~~~~~~---P~glav~~~~lywtd~~~~~V~  232 (318)
T 3sov_A          167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR--------QAV---VKGSLPH---PFALTLFEDILYWTDWSTHSIL  232 (318)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEE---ECSCCSC---EEEEEEETTEEEEEETTTTEEE
T ss_pred             CccEEEEeccCCEEEEEECCCCEEEEEcCCCCce--------EEE---ecCCCCC---ceEEEEeCCEEEEEecCCCeEE
Confidence            56899999976666554 4567899999864211        000   0001112   2356664333233323468999


Q ss_pred             EEEcCCccchhhh
Q 013578          380 WLSVETGKVLDTA  392 (440)
Q Consensus       380 i~d~~~~~~~~~~  392 (440)
                      .++..+|+....+
T Consensus       233 ~~~~~~G~~~~~i  245 (318)
T 3sov_A          233 ACNKYTGEGLREI  245 (318)
T ss_dssp             EEETTTCCSCEEE
T ss_pred             EEECCCCCceEEE
Confidence            9999888765554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.99  E-value=0.0035  Score=55.48  Aligned_cols=144  Identities=10%  Similarity=-0.016  Sum_probs=77.3

Q ss_pred             eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC--CCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578          226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT--ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT  303 (440)
Q Consensus       226 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~  303 (440)
                      ...+.|.+.++........+.........++++|.+..|+.....  +.|..+++....        ........-....
T Consensus       178 ~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--------~~~~~~~~~~~Pn  249 (386)
T 3v65_B          178 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--------RRIIADTHLFWPN  249 (386)
T ss_dssp             TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--------CEEEECSSCSCEE
T ss_pred             CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--------cEEEEECCCCCee
Confidence            334456666655332222222233456789999877777666543  456666553221        1111112234568


Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEE
Q 013578          304 WLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWL  381 (440)
Q Consensus       304 ~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~  381 (440)
                      .|+|+|++..|+.+ +..+.|..+|+.....        ..+   ......+   ...+++. .+.++.+ ...+.|..+
T Consensus       250 Glavd~~~~~lY~aD~~~~~I~~~d~dG~~~--------~~~---~~~~~~~---P~giav~-~~~ly~td~~~~~V~~~  314 (386)
T 3v65_B          250 GLTIDYAGRRMYWVDAKHHVIERANLDGSHR--------KAV---ISQGLPH---PFAITVF-EDSLYWTDWHTKSINSA  314 (386)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEECTTSCSC--------EEE---ECSSCSS---EEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             eEEEeCCCCEEEEEECCCCEEEEEeCCCCee--------EEE---EECCCCC---ceEEEEE-CCEEEEeeCCCCeEEEE
Confidence            99999866655544 4567899998864211        000   0001112   3356663 3333333 347889999


Q ss_pred             EcCCccchhhh
Q 013578          382 SVETGKVLDTA  392 (440)
Q Consensus       382 d~~~~~~~~~~  392 (440)
                      +..+|+.+..+
T Consensus       315 ~~~~G~~~~~i  325 (386)
T 3v65_B          315 NKFTGKNQEII  325 (386)
T ss_dssp             ETTTCCSCEEE
T ss_pred             ECCCCcceEEE
Confidence            97777766655

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.97  E-value=0.0064  Score=52.09  Aligned_cols=148  Identities=13%  Similarity=-0.007  Sum_probs=80.0

Q ss_pred             EEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC--CCEEEEEeEecCCCceeeeeeeeee-eccc
Q 013578          223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT--ADVKVWEIVYSKDGLVKAVTSVMQL-KGHK  299 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~-~~h~  299 (440)
                      ++-...+.|.++++........+.........++++|.+..|+.+...  +.|..+++....         ...+ ...-
T Consensus        93 ~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---------~~~~~~~~~  163 (316)
T 1ijq_A           93 WTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---------IYSLVTENI  163 (316)
T ss_dssp             EEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---------EEEEECSSC
T ss_pred             EEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---------eEEEEECCC
Confidence            333445567777765333222223233456789999977766666543  567666653211         1111 1223


Q ss_pred             cceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCE
Q 013578          300 SAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGST  377 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~  377 (440)
                      .....|+++|++..|+.+. ..+.|..+|+.....        +.+. .......+   ...+++.. +.++.+- ..+.
T Consensus       164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~--------~~~~-~~~~~~~~---P~giav~~-~~ly~~d~~~~~  230 (316)
T 1ijq_A          164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--------KTIL-EDEKRLAH---PFSLAVFE-DKVFWTDIINEA  230 (316)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEEE-ECTTTTSS---EEEEEEET-TEEEEEETTTTE
T ss_pred             CCceEEEEeccCCEEEEEECCCCeEEEEecCCCce--------EEEe-ecCCccCC---cEEEEEEC-CEEEEEECCCCe
Confidence            4578999998776665554 567899999874211        1000 00001112   23566643 4433333 4689


Q ss_pred             EEEEEcCCccchhhh
Q 013578          378 LQWLSVETGKVLDTA  392 (440)
Q Consensus       378 i~i~d~~~~~~~~~~  392 (440)
                      |..++..+|+.+..+
T Consensus       231 V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          231 IFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEETTTCCCCEEE
T ss_pred             EEEEeCCCCcceEEE
Confidence            999998877765554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.97  E-value=0.0085  Score=53.24  Aligned_cols=151  Identities=13%  Similarity=-0.023  Sum_probs=83.8

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      ++++-...+.|.+.++........+.........++++|.+..|+....  .+.|...++....        ........
T Consensus       173 lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~--------~~~~~~~~  244 (400)
T 3p5b_L          173 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--------IYSLVTEN  244 (400)
T ss_dssp             EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS--------CEEEECSS
T ss_pred             eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc--------cEEEEECC
Confidence            3444445566777777644433333333445688999997777776653  3667777664221        11111222


Q ss_pred             ccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCC
Q 013578          299 KSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGS  376 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~  376 (440)
                      -.....|+++|++..|+.+. ..+.|..+|+.....        +.+. .......+   ...+++.. +.++.+ ...+
T Consensus       245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~--------~~~~-~~~~~l~~---P~gl~v~~-~~lywtd~~~~  311 (400)
T 3p5b_L          245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--------KTIL-EDEKRLAH---PFSLAVFE-DKVFWTDIINE  311 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC--------EEEE-ECSSTTSS---EEEEEEET-TEEEEEESSSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc--------EEEE-eCCCCCCC---CEEEEEeC-CEEEEecCCCC
Confidence            35678999998777666554 567899999864311        0000 00000111   22455532 233333 3467


Q ss_pred             EEEEEEcCCccchhhh
Q 013578          377 TLQWLSVETGKVLDTA  392 (440)
Q Consensus       377 ~i~i~d~~~~~~~~~~  392 (440)
                      .|..+|..+|+.+..+
T Consensus       312 ~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          312 AIFSANRLTGSDVNLL  327 (400)
T ss_dssp             SEEEEESSSCCCCEEE
T ss_pred             eEEEEEcCCCCceEEE
Confidence            8888898888766655

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.95  E-value=0.0069  Score=54.75  Aligned_cols=276  Identities=12%  Similarity=0.046  Sum_probs=136.1

Q ss_pred             ceeEEEEcc-CCCEEEEee-CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEE-------ccCCCeEEEEeecCC--
Q 013578           93 SVTGLCFSS-DGKCLATAC-ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF-------ADNATSIVVATHNLS--  161 (440)
Q Consensus        93 ~V~~l~~s~-dg~~l~t~s-~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~-------~~~~~~l~~~~~~~~--  161 (440)
                      ....|+|+| ++..|+.+. ..+.|++.|+..+...  .+.......-..+..++|       ++++.+|+++.....  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~--~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS--SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE--EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE--EEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            467899998 344455444 3466777777754321  111111111234788999       999997777765531  


Q ss_pred             --cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC--
Q 013578          162 --GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK--  237 (440)
Q Consensus       162 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~--  237 (440)
                        ...+.+......         ..       |...  .....+.....+..+...+++..++++...++.|..+|+.  
T Consensus       218 ~~~~~V~~i~r~~~---------G~-------~~~~--~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~  279 (496)
T 3kya_A          218 DESPSVYIIKRNAD---------GT-------FDDR--SDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDY  279 (496)
T ss_dssp             GGEEEEEEEECCTT---------SC-------CSTT--SCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHH
T ss_pred             ccCceEEEEecCCC---------Cc-------eeec--ccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccc
Confidence              122333321110         00       0000  0001111223344555677666577777788889999987  


Q ss_pred             -----CCce-----------eee-eeC-CCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeee---
Q 013578          238 -----TGKL-----------LGN-VDT-NQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQL---  295 (440)
Q Consensus       238 -----~~~~-----------~~~-~~~-~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~---  295 (440)
                           ++..           ... +.. .......++|+|+|+.|+++. ....|+.++..... +.......+.-.   
T Consensus       280 ~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~-~~~~~~~~~aG~~g~  358 (496)
T 3kya_A          280 FKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK-KEFITPYNFVGGYKQ  358 (496)
T ss_dssp             HHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEECCCEEEEEBTTB
T ss_pred             cccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc-ceecccEEecCCCCC
Confidence                 5543           112 221 223357899999999766665 45667776654321 000000000000   


Q ss_pred             ecc---------ccceE-EEEEc-------CCCCEEEEEeCCCcEEEEecCccccccCCCCcccc------ccccc----
Q 013578          296 KGH---------KSAVT-WLCFA-------PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKV------LPIPL----  348 (440)
Q Consensus       296 ~~h---------~~~v~-~~~~~-------p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~----  348 (440)
                      .+.         -.... .+...       +++.++++-..+..|+.++.. +. +.........      ...-.    
T Consensus       359 ~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G~-v~TiaG~g~~~~~~~~~~~G~~dG~  436 (496)
T 3kya_A          359 SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-GI-VSTYAGRGASTSLADGNQWGTDDGD  436 (496)
T ss_dssp             CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-CB-EEEEEESCTTHHHHHSCSCCCCCEE
T ss_pred             CcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC-CC-EEEEecccccccccCccccccCCCC
Confidence            011         01234 45554       456666666677889998843 21 1110000000      00000    


Q ss_pred             cCCCCCeeeeeeEEeCCC-CCEEEEe-cCCEEEEEEcCCccchhh
Q 013578          349 LDSNGATLQYDRLSLSSD-GKILAAT-HGSTLQWLSVETGKVLDT  391 (440)
Q Consensus       349 ~~~~~~~~~v~~~~~s~~-g~~l~~~-~~~~i~i~d~~~~~~~~~  391 (440)
                      ......-..-..++++++ |.++++- .+..|+.++++.......
T Consensus       437 ~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~  481 (496)
T 3kya_A          437 LREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG  481 (496)
T ss_dssp             TTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred             chhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence            000011123457889986 6655553 368899988876655543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.89  E-value=0.00083  Score=62.80  Aligned_cols=54  Identities=13%  Similarity=-0.036  Sum_probs=34.9

Q ss_pred             ceEEEEeCCCCceeeeeeCCCC------cccE---EEecCCCC---eEEEEecCCCEEEEEeEecC
Q 013578          229 TDISIWHGKTGKLLGNVDTNQL------KNNM---AAISPNGR---FLAAAAFTADVKVWEIVYSK  282 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~------~v~~---~~~s~~~~---~l~~~~~dg~i~i~d~~~~~  282 (440)
                      +.|..+|..+|+.+..++....      .+..   +....+|+   .++.++.+|.++++|..+++
T Consensus       272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  337 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence            3588899999998877653211      1111   22224674   67788889999999875544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.88  E-value=0.00018  Score=68.73  Aligned_cols=201  Identities=11%  Similarity=0.078  Sum_probs=115.2

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcc-----------cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----------NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV  289 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----------~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  289 (440)
                      .++.++.++.|.-+|..+|+.+-++.......           ..+++  .+..+++++.|+.|..+|..+++       
T Consensus        68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~-------  138 (668)
T 1kv9_A           68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK-------  138 (668)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC-------
T ss_pred             EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCC-------
Confidence            56777778899999999999987775432211           11222  35678888889999999987665       


Q ss_pred             eeeeeeeccc----cceEE-EEEcCCCCEEEEEeC------CCcEEEEecCccccccCCCCc---cc-c-----c--ccc
Q 013578          290 TSVMQLKGHK----SAVTW-LCFAPNSEQIITASK------DGTLRVWNINVRYHLDEDPKT---LK-V-----L--PIP  347 (440)
Q Consensus       290 ~~~~~~~~h~----~~v~~-~~~~p~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~---~~-~-----~--~~~  347 (440)
                       .+-.+....    ..+.+ ..+. ++ .++.++.      +|.|..+|.++++.+......   .. .     +  ..+
T Consensus       139 -~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~  215 (668)
T 1kv9_A          139 -AIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK  215 (668)
T ss_dssp             -EEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred             -EeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccc
Confidence             222222110    11110 0111 34 4444432      588999999988765332110   00 0     0  000


Q ss_pred             ccCC------CCCeeeeeeEEeCCCCCEEEEec-CC-------------------EEEEEEcCCccchhhhhcc-cc---
Q 013578          348 LLDS------NGATLQYDRLSLSSDGKILAATH-GS-------------------TLQWLSVETGKVLDTAEKA-HE---  397 (440)
Q Consensus       348 ~~~~------~~~~~~v~~~~~s~~g~~l~~~~-~~-------------------~i~i~d~~~~~~~~~~~~~-h~---  397 (440)
                      ....      .+.......+++++++..+..+. ++                   .|..+|..+|+.+..+... |.   
T Consensus       216 ~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd  295 (668)
T 1kv9_A          216 TWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD  295 (668)
T ss_dssp             TCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred             cCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccc
Confidence            0000      01111234578888877776654 33                   4999999999988776432 22   


Q ss_pred             ----CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          398 ----GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       398 ----~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                          .+.....+..++     .....|+.++.+|.++++|..+++
T Consensus       296 ~~~~~~~~~~d~~~~G-----~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          296 FTATQQITLAELNIDG-----KPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             CCCCSCEEEEEEEETT-----EEEEEEEECCTTSEEEEEETTTCC
T ss_pred             ccCCCCcEEEEeccCC-----cEEEEEEEECCCCEEEEEECCCCC
Confidence                222222222343     111378999999999999999886

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.87  E-value=0.0018  Score=55.24  Aligned_cols=194  Identities=15%  Similarity=0.222  Sum_probs=109.9

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC----CCe--EEEEe-c---CCCEEEEEeEecCCCceeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN----GRF--LAAAA-F---TADVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~----~~~--l~~~~-~---dg~i~i~d~~~~~~~~~~~~~  290 (440)
                      +++.....+-+.+||+ +|+.++.+..  ..+..+.+-|+    |+.  ++.++ .   +++|.+|++.....    .+.
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~----~l~  114 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG----TLQ  114 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC----CEE
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC----cee
Confidence            4555566677999999 7998888764  34555555442    222  33333 3   46899998843221    111


Q ss_pred             eeee----eeccccceEEEEE--cCC-CC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          291 SVMQ----LKGHKSAVTWLCF--APN-SE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       291 ~~~~----~~~h~~~v~~~~~--~p~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                      .+..    +..-...+..+++  +|. +. +++....+|.+..|++.....-....+..+.+..     .   ..+..|.
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----g---sq~Egcv  186 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----N---SQTEGMA  186 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----S---SCEEEEE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----C---CCcceEE
Confidence            1111    1111145666777  774 43 6788888999999998532110001111222221     1   1355788


Q ss_pred             eCCCCCEEEEec-CCEEEEEEcC-----Cccchhhhhcccc-CCeEEEEec--CCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          363 LSSDGKILAATH-GSTLQWLSVE-----TGKVLDTAEKAHE-GEITCMAWA--PKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       363 ~s~~g~~l~~~~-~~~i~i~d~~-----~~~~~~~~~~~h~-~~v~~v~~~--~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      ..+....|..+. +..|..|+.+     +++.+..+..+|- ..+..|+..  +++      ++.+|+++-.+.++.||+
T Consensus       187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g------~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADG------KGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGG------CEEEEEEEGGGTEEEEEE
T ss_pred             EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCC------CEEEEEEcCCCCEEEEEE
Confidence            888777777765 5667777755     3444443322232 368888884  443      113444444678999999


Q ss_pred             CC
Q 013578          434 AP  435 (440)
Q Consensus       434 ~~  435 (440)
                      ..
T Consensus       261 r~  262 (355)
T 3amr_A          261 RQ  262 (355)
T ss_dssp             SS
T ss_pred             CC
Confidence            86

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.84  E-value=0.013  Score=51.09  Aligned_cols=63  Identities=16%  Similarity=0.167  Sum_probs=37.6

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC---CCeEEEE
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN---ATSIVVA  156 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~  156 (440)
                      -..-+.++|.|||+++++ ..+|.|++++  .+....................++|+|+   +..|.++
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~   95 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY   95 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence            345779999999985555 5669999888  3321111101111122356788999988   5555444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.83  E-value=0.015  Score=56.36  Aligned_cols=150  Identities=13%  Similarity=-0.016  Sum_probs=81.3

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC--CCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT--ADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      ++++-...+.|.+.++........+.........|+++|.+.+|+.....  +.|...++....        ....+...
T Consensus       485 LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--------~~~lv~~~  556 (791)
T 3m0c_C          485 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--------IYSLVTEN  556 (791)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--------EEEEECSS
T ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc--------eEEEEeCC
Confidence            34444455667777776433323333333456889999987777776532  556666653221        11112223


Q ss_pred             ccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cC
Q 013578          299 KSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HG  375 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~  375 (440)
                      -.....|++++.+..|+.+. ..+.|...++......        .+    ............|++..  ..|..+  ..
T Consensus       557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~--------~v----~~~~~~l~~P~glav~~--~~lYwtD~~~  622 (791)
T 3m0c_C          557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--------TI----LEDEKRLAHPFSLAVFE--DKVFWTDIIN  622 (791)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--------EE----EECTTTTSSEEEEEEET--TEEEEEETTT
T ss_pred             CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE--------EE----ecCCCccCCCCEEEEeC--CEEEEEECCC
Confidence            35688999998766666554 5567888888643211        00    00000011122455533  344443  36


Q ss_pred             CEEEEEEcCCccchhhh
Q 013578          376 STLQWLSVETGKVLDTA  392 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~  392 (440)
                      +.|...+..+|+.+..+
T Consensus       623 ~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          623 EAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TEEEEEETTTCCCCEEE
T ss_pred             CEEEEEeCCCCcceEEe
Confidence            78888888777665554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.81  E-value=0.00027  Score=67.77  Aligned_cols=171  Identities=12%  Similarity=-0.030  Sum_probs=91.9

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                      .+.+..++++-...+.|.++++........+.........++++|.+.+|+.+..  .+.|..+++....        ..
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~--------~~  532 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--------IY  532 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC--------CC
T ss_pred             EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC--------ee
Confidence            3334435566566778999998755433333333345678999997666666543  2677776653221        01


Q ss_pred             eeeeccccceEEEEEcCCCCEEE-EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                      ......-.....|+|+|++..|+ +-+..+.|..+++......        .+    ............+++..+.-|++
T Consensus       533 ~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~--------~~----~~~~~~~~~P~glavd~~~lywt  600 (699)
T 1n7d_A          533 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--------TI----LEDEKRLAHPFSLAVFEDKVFWT  600 (699)
T ss_dssp             EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE--------EE----CCCSSSCSSCCCCEEETTEEEEE
T ss_pred             EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE--------EE----EecCCcCCCceEeEEECCEEEEE
Confidence            11111223467899999765554 4456678999998642110        00    00000011122455544422222


Q ss_pred             EecCCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578          372 ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       372 ~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~  406 (440)
                      ....+.|..++..+|+.+..+. ......+.|++.
T Consensus       601 d~~~~~V~~~d~~~G~~~~~i~-~~~~~P~~i~v~  634 (699)
T 1n7d_A          601 DIINEAIFSANRLTGSDVNLLA-ENLLSPEDMVLF  634 (699)
T ss_dssp             CSTTTCEEEEETTTEEEEECCC-TTCSSCCCCCBC
T ss_pred             eCCCCeEEEEEccCCCceEEee-cCCCCCcEEEEe
Confidence            2346899999988888766653 222234445433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.77  E-value=0.03  Score=54.28  Aligned_cols=186  Identities=10%  Similarity=-0.069  Sum_probs=103.5

Q ss_pred             EEEEeeCCceEEEEeCCCC----ceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTG----KLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      ++++-...+.|+.+++...    .....+.........+++.+.++.|+.+. ..+.|.+.++....        ....+
T Consensus       438 lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~--------~~~l~  509 (791)
T 3m0c_C          438 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--------RKTLF  509 (791)
T ss_dssp             EEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--------EEEEE
T ss_pred             eEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe--------EEEEE
Confidence            4444445566777776532    22223332344567899998776666554 56778888864322        11112


Q ss_pred             eccccceEEEEEcCCCCEEEEEe-CC-CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe
Q 013578          296 KGHKSAVTWLCFAPNSEQIITAS-KD-GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT  373 (440)
Q Consensus       296 ~~h~~~v~~~~~~p~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  373 (440)
                      .........|+++|.+.+|+... .+ +.|...++......        .+    ..  ........|++++.+..|..+
T Consensus       510 ~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~--------~l----v~--~~l~~P~GLavD~~~~~LYwa  575 (791)
T 3m0c_C          510 RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--------SL----VT--ENIQWPNGITLDLLSGRLYWV  575 (791)
T ss_dssp             ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--------EE----EC--SSCSCEEEEEEETTTTEEEEE
T ss_pred             eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE--------EE----Ee--CCCCCceEEEEecCCCeEEEE
Confidence            22334578999999766555544 33 67888887643211        00    00  111235579999877766655


Q ss_pred             c--CCEEEEEEcCCccchhhhhc-cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          374 H--GSTLQWLSVETGKVLDTAEK-AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       374 ~--~~~i~i~d~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +  .+.|..+++........+.. ..-....+|++..+         .++++-...+.|...+..++
T Consensus       576 D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~---------~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          576 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED---------KVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT---------EEEEEETTTTEEEEEETTTC
T ss_pred             eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC---------EEEEEECCCCEEEEEeCCCC
Confidence            4  57899999865433222210 12234567777554         46666666777777775554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.76  E-value=0.0024  Score=57.33  Aligned_cols=195  Identities=7%  Similarity=-0.045  Sum_probs=106.5

Q ss_pred             ccccCCC--CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC---CEEEEEeEecCCCc
Q 013578          211 ATYGTAD--GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA---DVKVWEIVYSKDGL  285 (440)
Q Consensus       211 ~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~  285 (440)
                      .+.+.++  +. .|+.+...+.|+.+|..+++..... ........++++++|+ |+++...+   .-.++.+.....  
T Consensus       143 gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~--  217 (433)
T 4hw6_A          143 RMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG--  217 (433)
T ss_dssp             EEEECTTTTTC-EEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT--
T ss_pred             eEEEccccCCC-EEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC--
Confidence            3444553  33 3444433378999999877655433 3344578899999999 55554422   122222221110  


Q ss_pred             eeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578          286 VKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS  364 (440)
Q Consensus       286 ~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  364 (440)
                      ....   ..+. .......++++| ++.++++-..++.|+.+|..++....      ....    . .. ...-..++|+
T Consensus       218 ~~~~---~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~------~~~~----~-~~-~~~~~~ia~d  281 (433)
T 4hw6_A          218 FTER---LSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE------EEVM----M-DT-KGSNFHIVWH  281 (433)
T ss_dssp             TCCE---EEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE------EEEE----C-SC-CSSCEEEEEC
T ss_pred             eecc---cccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE------EEec----c-CC-CCCcccEEEe
Confidence            0000   1111 223456788999 66666566677889999887443210      0000    0 00 0112259999


Q ss_pred             CCCCEEEEec--CCEEEEEEcC--Cccch--hhhhc-----c---------ccCCeEEEEe---------cCCCCCCCCC
Q 013578          365 SDGKILAATH--GSTLQWLSVE--TGKVL--DTAEK-----A---------HEGEITCMAW---------APKTIPMGNQ  415 (440)
Q Consensus       365 ~~g~~l~~~~--~~~i~i~d~~--~~~~~--~~~~~-----~---------h~~~v~~v~~---------~~~~~~~~~~  415 (440)
                      |+|++|..++  .+.|+.++..  ++...  ..+..     +         .-.....+++         .+++      
T Consensus       282 pdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g------  355 (433)
T 4hw6_A          282 PTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY------  355 (433)
T ss_dssp             TTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE------
T ss_pred             CCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC------
Confidence            9999665544  6789998765  33221  11100     0         1124667888         5665      


Q ss_pred             cceEEEEeeCCCeEEEEeC
Q 013578          416 QVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       416 ~~~~l~t~~~Dg~i~vw~~  434 (440)
                        .++++-...+.|+.++.
T Consensus       356 --~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          356 --DFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             --EEEEEETTTTEEEEECT
T ss_pred             --cEEEEECCCCEEEEECC
Confidence              66666666788888874

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.73  E-value=0.0012  Score=61.81  Aligned_cols=31  Identities=19%  Similarity=0.191  Sum_probs=24.7

Q ss_pred             CCC--eEEEEeeCCceEEEEeCCCCceeeeeeC
Q 013578          217 DGS--TIIASCSEGTDISIWHGKTGKLLGNVDT  247 (440)
Q Consensus       217 ~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~  247 (440)
                      +|+  ..++.++.+|.++++|..+|+.+..+..
T Consensus       332 ~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          332 DGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             SSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             CCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence            454  3688899999999999999998766543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.66  E-value=0.0046  Score=53.92  Aligned_cols=149  Identities=17%  Similarity=0.223  Sum_probs=90.6

Q ss_pred             CceEEEEeCCCCceeeeeeCC----CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee----eeeeeeeeec--
Q 013578          228 GTDISIWHGKTGKLLGNVDTN----QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK----AVTSVMQLKG--  297 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~--  297 (440)
                      ++.||.-++......+.+...    ...+..+..+|+|++||..+ +..|.|..+..+......    ..-....+.-  
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~  118 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE  118 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence            366887777755444555443    23678899999999999986 568999888733211110    0001111211  


Q ss_pred             ----cccceEEEEEcCC---CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          298 ----HKSAVTWLCFAPN---SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       298 ----h~~~v~~~~~~p~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                          ...+|..+.|||-   +..|++-..|+.|++||+.....   .+..... ....+........|.+++|+.++-.|
T Consensus       119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~---~P~~L~k-~~~~fg~d~~~~ev~S~~Fg~~~lTL  194 (452)
T 3pbp_A          119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE---KPIVLNK-PNNSFGLDARVNDITDLEFSKDGLTL  194 (452)
T ss_dssp             CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS---CCEEESC-CCSEEESCSSCCCEEEEEECTTSSCE
T ss_pred             cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC---CCcchhc-cccccCCCcccceEEEEEEcCCCcEE
Confidence                2577999999994   45799999999999999986221   1110100 00111222333668899999987744


Q ss_pred             EE--e-cCCEEEEE
Q 013578          371 AA--T-HGSTLQWL  381 (440)
Q Consensus       371 ~~--~-~~~~i~i~  381 (440)
                      ..  . .+|.|+-.
T Consensus       195 Yvl~~t~~GDIYAl  208 (452)
T 3pbp_A          195 YCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             EEEecCCCCCEEEE
Confidence            44  3 36777653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.66  E-value=0.00081  Score=60.44  Aligned_cols=154  Identities=8%  Similarity=0.058  Sum_probs=92.2

Q ss_pred             cccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC-CC----cEE
Q 013578          251 KNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK-DG----TLR  324 (440)
Q Consensus       251 ~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-dg----~i~  324 (440)
                      ....++++| ++..|+++...+.|+.+|+....         +..+.........++|++++++|+.+.. ++    .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~---------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~  208 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY---------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNY  208 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE---------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE---------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence            457889998 46667777666777777764322         2222224456789999999996665553 22    233


Q ss_pred             EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC-CCCEEEEe-cCCEEEEEEcCCccchhhhhccccCCeEE
Q 013578          325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS-DGKILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEITC  402 (440)
Q Consensus       325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~  402 (440)
                      ..+.. +...     ....+  ..      ......++++| +|.++++- .++.|+.++..++........+.......
T Consensus       209 ~~~~~-g~~~-----~~~~l--~~------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~g  274 (430)
T 3tc9_A          209 ILTRE-SGFK-----VITEL--TK------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFH  274 (430)
T ss_dssp             EEEGG-GTSC-----SEEEE--EE------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEE
T ss_pred             EEeCC-Ccee-----eeeee--cc------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCccee
Confidence            33332 1110     00011  00      11234688999 66665554 36899999998765422221122245789


Q ss_pred             EEecCCCCCCCCCcce-EEEEeeCCCeEEEEeCC
Q 013578          403 MAWAPKTIPMGNQQVS-VLATSSVDKKVKLWLAP  435 (440)
Q Consensus       403 v~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw~~~  435 (440)
                      ++|+|++        + ++++-...+.|..++.+
T Consensus       275 ia~~pdG--------~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          275 IQFHPSG--------NYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEECTTS--------SEEEEEETTTTEEEEEEEE
T ss_pred             EEEcCCC--------CEEEEEECCCCEEEEEeCC
Confidence            9999998        6 55565667889988765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.65  E-value=0.00037  Score=66.79  Aligned_cols=196  Identities=10%  Similarity=-0.075  Sum_probs=105.7

Q ss_pred             ccccCCCCCeEEEEeeCCceEEEEeCCC----CceeeeeeCCCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCc
Q 013578          211 ATYGTADGSTIIASCSEGTDISIWHGKT----GKLLGNVDTNQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGL  285 (440)
Q Consensus       211 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~  285 (440)
                      .+.+.+.+..++++-...+.|+.+++..    ......+.........+++.+.+..|+.+ ...+.|.++++....   
T Consensus       410 gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~---  486 (699)
T 1n7d_A          410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---  486 (699)
T ss_dssp             CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC---
T ss_pred             EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc---
Confidence            3444555554555555667788888764    22222222222335678888655444444 456789888864322   


Q ss_pred             eeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CC-CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          286 VKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KD-GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       286 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                           ....+.........|+++|.+.+|+.+. .. +.|..+++.....        ..+.    .  ........|+|
T Consensus       487 -----~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--------~~l~----~--~~l~~PnGlav  547 (699)
T 1n7d_A          487 -----RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------YSLV----T--ENIQWPNGITL  547 (699)
T ss_dssp             -----EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--------CEES----C--SSCSSCCCEEE
T ss_pred             -----eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--------eEEE----e--CCCCCccEEEE
Confidence                 1111121223467889999665555443 22 6777777653211        0000    0  00112346999


Q ss_pred             CCCCCEEEEec--CCEEEEEEcCCccchhhhh-ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          364 SSDGKILAATH--GSTLQWLSVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       364 s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +|++..|..++  .+.|..+++........+. .........|++..+         .++++....+.|..++..++
T Consensus       548 d~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~---------~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          548 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED---------KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             CTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT---------EEEEECSTTTCEEEEETTTE
T ss_pred             eccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC---------EEEEEeCCCCeEEEEEccCC
Confidence            99876555543  6789999986433222111 011233455566554         57777777788988886543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.58  E-value=0.015  Score=49.18  Aligned_cols=150  Identities=11%  Similarity=0.086  Sum_probs=91.1

Q ss_pred             EEEEeeCCceEEEEeCCCCceeee-eeC----C--CCcccEEEe---cCCCCeEEEEec-------------CCCEEEEE
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGN-VDT----N--QLKNNMAAI---SPNGRFLAAAAF-------------TADVKVWE  277 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~-~~~----~--~~~v~~~~~---s~~~~~l~~~~~-------------dg~i~i~d  277 (440)
                      ++++.-..++|..|+...+..... +..    .  ...+..+.+   .|+++++++...             +..+..||
T Consensus        27 ~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~D  106 (334)
T 2p9w_A           27 FYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFN  106 (334)
T ss_dssp             EEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEE
T ss_pred             EEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEc
Confidence            555555789999999875543322 221    0  113468899   688777776442             56788899


Q ss_pred             eE---ecCCCceeeeeeeeeeecc-----------ccceEEEEEcCCCCEEEEEeCC-CcEEEEecCccccccCCCCccc
Q 013578          278 IV---YSKDGLVKAVTSVMQLKGH-----------KSAVTWLCFAPNSEQIITASKD-GTLRVWNINVRYHLDEDPKTLK  342 (440)
Q Consensus       278 ~~---~~~~~~~~~~~~~~~~~~h-----------~~~v~~~~~~p~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~  342 (440)
                      +.   +++..      ....+...           ......++..++|+..++++.- +.|...+......        .
T Consensus       107 l~~~~tg~~~------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~--------~  172 (334)
T 2p9w_A          107 LPLSENSKPV------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV--------S  172 (334)
T ss_dssp             SSCCTTCCCS------EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE--------E
T ss_pred             CCcCCCCCEE------EEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE--------e
Confidence            86   33310      11112111           1247899999999998888877 7766666553211        0


Q ss_pred             cccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578          343 VLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET  385 (440)
Q Consensus       343 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~  385 (440)
                      .+.. ...........+.+++.|+|..|++.. ++.|..+|+.+
T Consensus       173 ~~~~-~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          173 TFAW-ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEE-CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eeee-cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            0000 000111123356799999999777753 88999999884

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.58  E-value=0.0027  Score=59.44  Aligned_cols=203  Identities=11%  Similarity=0.027  Sum_probs=112.1

Q ss_pred             EEEEeeC-CceEEEEeC-CCCceeeeeeCCCCc-----------ccEEEecCCCCe----EEEEecCCCEEEEEeEecCC
Q 013578          221 IIASCSE-GTDISIWHG-KTGKLLGNVDTNQLK-----------NNMAAISPNGRF----LAAAAFTADVKVWEIVYSKD  283 (440)
Q Consensus       221 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~----l~~~~~dg~i~i~d~~~~~~  283 (440)
                      .++.++. ++.|.-+|. .+|+.+-++......           ...++++|.+..    +++++.|+.|..+|..+++ 
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~-  142 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE-  142 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC-
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC-
Confidence            5666666 788999999 899988776543211           123455444444    8888889999999986665 


Q ss_pred             Cceeeeeeeeeeeccc--cceEE-EEEcCCCCEEEEEe------CCCcEEEEecCccccccCCCCccccccc--------
Q 013578          284 GLVKAVTSVMQLKGHK--SAVTW-LCFAPNSEQIITAS------KDGTLRVWNINVRYHLDEDPKTLKVLPI--------  346 (440)
Q Consensus       284 ~~~~~~~~~~~~~~h~--~~v~~-~~~~p~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------  346 (440)
                         ..++.  .+..+.  ..+.+ -.+. ++ .++.++      .++.|+-+|.++++.+............        
T Consensus       143 ---~~W~~--~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~  215 (599)
T 1w6s_A          143 ---TVWKV--ENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNI  215 (599)
T ss_dssp             ---EEEEE--ECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred             ---EEEee--cCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccc
Confidence               11111  111110  01111 1111 44 455544      3789999999988765322111110000        


Q ss_pred             -----------------cccCCCCCeeeeeeEEeCCCCCEEEEec-C----------------CEEEEEEcCCccchhhh
Q 013578          347 -----------------PLLDSNGATLQYDRLSLSSDGKILAATH-G----------------STLQWLSVETGKVLDTA  392 (440)
Q Consensus       347 -----------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~----------------~~i~i~d~~~~~~~~~~  392 (440)
                                       ..... +.......+++.++...+..+. +                +.|..+|.++|+.+..+
T Consensus       216 ~~~~~g~~~~g~~tw~g~~~~~-gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~  294 (599)
T 1w6s_A          216 KNPHYGQKGLGTGTWEGDAWKI-GGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY  294 (599)
T ss_dssp             TCGGGCCTTHHHHTSSTTGGGG-CCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred             ccccccccccccccCCCcceec-CCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence                             00000 0111112456666666665543 2                38999999999988766


Q ss_pred             hccccC---------CeEEEEec-CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          393 EKAHEG---------EITCMAWA-PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       393 ~~~h~~---------~v~~v~~~-~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ...|.+         ++. +... .++     .....++.++.+|.+.+.|..+++
T Consensus       295 q~~~~d~wd~d~~~~p~l-~d~~~~~G-----~~~~~v~~~~~~G~l~~lD~~tG~  344 (599)
T 1w6s_A          295 QKTPHDEWDYAGVNVMML-SEQKDKDG-----KARKLLTHPDRNGIVYTLDRTDGA  344 (599)
T ss_dssp             ESSTTCSSCCCCCCCCEE-EEEECTTS-----CEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ecCCCccccccCCCccEE-EeccccCC-----cEEEEEEEECCCcEEEEEECCCCC
Confidence            433321         111 2221 232     111367778899999999998886

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.52  E-value=0.006  Score=51.56  Aligned_cols=99  Identities=13%  Similarity=0.142  Sum_probs=63.6

Q ss_pred             CceEEEEeCC---CCceeeeeeC-------------CCCcccEEEecCCCCeEEEEecC-CCEEEEEeEecCCCceeeee
Q 013578          228 GTDISIWHGK---TGKLLGNVDT-------------NQLKNNMAAISPNGRFLAAAAFT-ADVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       228 d~~i~vwd~~---~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~  290 (440)
                      +..|..||+.   +++.+.....             .......++..++|+..++++.. +.|...+....   ....+.
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~---~~~~~~  175 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK---TVSTFA  175 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC---CEEEEE
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC---EEeeee
Confidence            4568888888   7776654432             11236789999999999988877 76554443211   011111


Q ss_pred             eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                      ............+.|+++|+|..|+....+|.+..+|++
T Consensus       176 ~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          176 WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            001011122346799999999988888779999999988

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.49  E-value=0.043  Score=47.72  Aligned_cols=61  Identities=10%  Similarity=-0.001  Sum_probs=37.0

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe--cCCCCCCCceEEEccC---CCeEEEE
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI--NLPPGGPPTAVAFADN---ATSIVVA  156 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~~~---~~~l~~~  156 (440)
                      -...+.|+|.|||+++++ ..+|.|++++. ++. .  .+...  ..........|+|+|+   +..|.++
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~--~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~   93 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-K--LVASFDVANVGEAGLLGLALHPEFPKKSWVYLY   93 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-E--EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-e--EeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence            456789999999985554 56698988863 222 1  11111  1112345788999987   4444443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.48  E-value=0.04  Score=47.09  Aligned_cols=161  Identities=18%  Similarity=0.209  Sum_probs=95.3

Q ss_pred             EEEeeC--CceEEEEeC--CCCceeeeee-------CCCCcccEEEe--cCC-CC-eEEEEecCCCEEEEEeEecCCCce
Q 013578          222 IASCSE--GTDISIWHG--KTGKLLGNVD-------TNQLKNNMAAI--SPN-GR-FLAAAAFTADVKVWEIVYSKDGLV  286 (440)
Q Consensus       222 l~s~~~--d~~i~vwd~--~~~~~~~~~~-------~~~~~v~~~~~--s~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~  286 (440)
                      +++...  +++|.+|++  .+++ +..+.       .....+..+++  ++. ++ ++++...+|.+..|++.....+..
T Consensus        90 ~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~  168 (355)
T 3amr_A           90 AASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI  168 (355)
T ss_dssp             EEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE
T ss_pred             EEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc
Confidence            444445  678999966  3443 44441       11144566777  774 43 677888899999999976544432


Q ss_pred             eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe--C
Q 013578          287 KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL--S  364 (440)
Q Consensus       287 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s  364 (440)
                       ..+.+.++.. .+.+..+...+...+|+.+-+|.-|..++.+....     .....+  .......-...+..|++  .
T Consensus       169 -~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-----~~~~~v--~~~~~g~l~aDvEGLai~~~  239 (355)
T 3amr_A          169 -SGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-----SNGTVI--DRADGRHLTRDIEGLTIYYA  239 (355)
T ss_dssp             -EEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-----SCCEEE--EEBSSSSBCSCEEEEEEEEC
T ss_pred             -cceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCC-----CCceEE--EEecCCccccCcceEEEEec
Confidence             2335555553 45788999999888999999986666666442110     000011  01111111123556666  5


Q ss_pred             CCCC-EEEEec--CCEEEEEEcC-Cccchhhh
Q 013578          365 SDGK-ILAATH--GSTLQWLSVE-TGKVLDTA  392 (440)
Q Consensus       365 ~~g~-~l~~~~--~~~i~i~d~~-~~~~~~~~  392 (440)
                      ++++ ||++++  ++.+.+||.. +.+.+..+
T Consensus       240 ~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          240 ADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             GGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            6666 566554  6799999997 56655554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.47  E-value=0.013  Score=46.20  Aligned_cols=172  Identities=9%  Similarity=0.035  Sum_probs=89.6

Q ss_pred             EEEEeeCCceEEEEeCCCCce------eeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee-
Q 013578          221 IIASCSEGTDISIWHGKTGKL------LGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV-  292 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-  292 (440)
                      +|+...+| +++.=....+..      ...+-. .-..+..++|+|+|.+.++  .+|.++-.+..+...   ..+... 
T Consensus         6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~---~~W~~s~   79 (236)
T 1tl2_A            6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN---DNWMGRA   79 (236)
T ss_dssp             CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTT---CCHHHHC
T ss_pred             EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCc---ccccccc
Confidence            56666677 666554444431      122211 1246789999999987776  677655444322110   000000 


Q ss_pred             eee--eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          293 MQL--KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       293 ~~~--~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                      ..+  .+-.. -..+.|.|+|.+.++  .||.|.-++-.+...     ... ... ........-..+..+.+.|+|.+.
T Consensus        80 t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~-----~~W-l~~-a~~vg~~gw~~~~~lff~p~G~Ly  149 (236)
T 1tl2_A           80 KKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDT-----DNW-IAR-ATEVGSGGWSGFKFLFFHPNGYLY  149 (236)
T ss_dssp             EEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTT-----CCH-HHH-SEEEECSSGGGEEEEEECTTSCEE
T ss_pred             cEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCC-----Cce-ecc-ccEeccCCCCceEEEEECCCceEE
Confidence            011  01111 478899999987777  569888776532111     000 000 011111122356889999999999


Q ss_pred             EEecCCEEEEEEcCCccchhhh-----h-ccccCCeEEEEecCCC
Q 013578          371 AATHGSTLQWLSVETGKVLDTA-----E-KAHEGEITCMAWAPKT  409 (440)
Q Consensus       371 ~~~~~~~i~i~d~~~~~~~~~~-----~-~~h~~~v~~v~~~~~~  409 (440)
                      ++. ++.++-....++....-+     . ...-..-.-+.|.+++
T Consensus       150 av~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          150 AVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             EEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             EEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            999 888654433322211111     0 0112234557799987

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.37  E-value=0.039  Score=47.65  Aligned_cols=168  Identities=8%  Similarity=0.126  Sum_probs=91.9

Q ss_pred             CCceEEEEeCCCC--ceeeeee--C-----CCCcccEEEecC--CCC-eEEEEe-c--CCCEEEEEeEecCCCceeeeee
Q 013578          227 EGTDISIWHGKTG--KLLGNVD--T-----NQLKNNMAAISP--NGR-FLAAAA-F--TADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       227 ~d~~i~vwd~~~~--~~~~~~~--~-----~~~~v~~~~~s~--~~~-~l~~~~-~--dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                      .+|.|.++|+.+.  +. ..+.  .     .......+.+.+  ++. +|+++. .  +..|.+|++.....    ....
T Consensus        81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~----~~~~  155 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK----SLLH  155 (355)
T ss_dssp             -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT----EEEE
T ss_pred             CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC----EEEE
Confidence            6889999998742  22 2222  1     112344555544  443 344443 2  46788998865431    2223


Q ss_pred             eeeeecc-ccceEEEEEcCCCCEEEEEeC---C--------------CcEEEEecCccccccCCCCccccccccccCCCC
Q 013578          292 VMQLKGH-KSAVTWLCFAPNSEQIITASK---D--------------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNG  353 (440)
Q Consensus       292 ~~~~~~h-~~~v~~~~~~p~~~~l~s~~~---d--------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (440)
                      +..+.+. -...+.+.+.++|.+.++...   |              |.|.-+|..          ..+...       .
T Consensus       156 ~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~----------~~~~~~-------~  218 (355)
T 3sre_A          156 LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN----------DVRVVA-------E  218 (355)
T ss_dssp             EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT----------CCEEEE-------E
T ss_pred             EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC----------eEEEee-------c
Confidence            3444432 245789999999997777641   1              233333321          000000       0


Q ss_pred             CeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCC-ccch--hhhhccccCCeEEEEecC-CCCCCCCCcceEEEEeeCC
Q 013578          354 ATLQYDRLSLSSDGKILAATH--GSTLQWLSVET-GKVL--DTAEKAHEGEITCMAWAP-KTIPMGNQQVSVLATSSVD  426 (440)
Q Consensus       354 ~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~-~~~~--~~~~~~h~~~v~~v~~~~-~~~~~~~~~~~~l~t~~~D  426 (440)
                      .-..-+.++|+||++.|..++  .+.|+.|++.. ++..  ..+  ...+..-.+++.+ +|        ++.+++..+
T Consensus       219 ~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G--------~lwva~~~~  287 (355)
T 3sre_A          219 GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTG--------DLWVGCHPN  287 (355)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTC--------CEEEEEESC
T ss_pred             CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCC--------cEEEEecCC
Confidence            011245799999999877764  68999999863 3321  112  1234567777877 46        666656544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.35  E-value=0.023  Score=51.35  Aligned_cols=161  Identities=12%  Similarity=0.086  Sum_probs=87.3

Q ss_pred             cccCC-CCCeEEEEeeCCceEEEEeCCCCceeeeeeCC---CCcccEEEe-------cCCCCeEEEEecCC-C------E
Q 013578          212 TYGTA-DGSTIIASCSEGTDISIWHGKTGKLLGNVDTN---QLKNNMAAI-------SPNGRFLAAAAFTA-D------V  273 (440)
Q Consensus       212 ~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~-------s~~~~~l~~~~~dg-~------i  273 (440)
                      +.+.| ++..++++....+.|++.|+.++.........   ......++|       +++|+.|+++...+ .      |
T Consensus       144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V  223 (496)
T 3kya_A          144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSV  223 (496)
T ss_dssp             EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEE
T ss_pred             EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceE
Confidence            34455 34434455444577999999877665444332   224678999       99999777776654 2      4


Q ss_pred             EEEEeEecCCCceee---eeeeeeeeccccceEEEEEcCC-CCEEEEEeCCCcEEEEecC-------cccccc----CCC
Q 013578          274 KVWEIVYSKDGLVKA---VTSVMQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNIN-------VRYHLD----EDP  338 (440)
Q Consensus       274 ~i~d~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~-------~~~~~~----~~~  338 (440)
                      .+++.  ..++....   ...+..+    .....++++|+ +.++++-..++.|..+|+.       ++..-.    ...
T Consensus       224 ~~i~r--~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          224 YIIKR--NADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             EEEEC--CTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             EEEec--CCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence            45542  22122210   0112122    23457889995 4555566678889999987       332100    000


Q ss_pred             CccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEc
Q 013578          339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSV  383 (440)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~  383 (440)
                      .....    +... +....-..++|+|+|.+|..+  ....|+.++.
T Consensus       298 g~~~~----l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          298 NTFKQ----LFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TTEEE----EEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cccce----eEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            00000    0000 111223579999999965554  3678888654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.30  E-value=0.068  Score=45.96  Aligned_cols=66  Identities=14%  Similarity=0.137  Sum_probs=40.7

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeE-EecCCCCCCCceEEEccC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL-RINLPPGGPPTAVAFADN  149 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~  149 (440)
                      +..+-.--..-+.|+|.|||.++++--..|.|++++...+.......+ ............|+|+|+
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence            334444456788999999999877765589998887654432111000 011122356788999985

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.28  E-value=0.13  Score=48.64  Aligned_cols=179  Identities=10%  Similarity=-0.069  Sum_probs=104.2

Q ss_pred             eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578          226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW  304 (440)
Q Consensus       226 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (440)
                      ..++.|+.+++........+.........+++++.+..|+.+. ..+.|.+.++....    .    .......-.....
T Consensus        56 ~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~----~----~~l~~~~l~~P~~  127 (628)
T 4a0p_A           56 ISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH----R----QVLVWKDLDSPRA  127 (628)
T ss_dssp             TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT----C----EEEECSSCCCEEE
T ss_pred             CCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc----E----EEEEeCCCCCccc
Confidence            3445566666654333223332234567889987766565554 45678887764322    1    1111123345689


Q ss_pred             EEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEE
Q 013578          305 LCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQW  380 (440)
Q Consensus       305 ~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i  380 (440)
                      |+++|...+|+...  ..+.|...++.....        ..+    ..   .......+++++++..|..++  .+.|..
T Consensus       128 iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--------~~l----~~---~~~~P~GlalD~~~~~LY~aD~~~~~I~~  192 (628)
T 4a0p_A          128 LALDPAEGFMYWTEWGGKPKIDRAAMDGSER--------TTL----VP---NVGRANGLTIDYAKRRLYWTDLDTNLIES  192 (628)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSC--------EEE----EC---SCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEccCCCeEEEeCCCCCCEEEEEeCCCCce--------EEE----EC---CCCCcceEEEccccCEEEEEECCCCEEEE
Confidence            99999655555444  256777777764321        110    01   112345799999877666654  688999


Q ss_pred             EEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          381 LSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       381 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +|+..... ..+ .........+++..+         .+++|-...+.|...+..+++
T Consensus       193 ~d~dG~~~-~v~-~~~l~~P~glav~~~---------~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          193 SNMLGLNR-EVI-ADDLPHPFGLTQYQD---------YIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EETTSCSC-EEE-EECCSCEEEEEEETT---------EEEEEETTTTEEEEEETTTCC
T ss_pred             EcCCCCce-EEe-eccCCCceEEEEECC---------EEEEecCCCCEEEEEECCCCC
Confidence            99866443 223 233445678888764         566666667888888876654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.26  E-value=0.045  Score=43.15  Aligned_cols=114  Identities=17%  Similarity=0.070  Sum_probs=59.1

Q ss_pred             ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee--eccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578          252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL--KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                      ..++.|.++|.+.++  .||.|+-++-......   .+......  .+-=..+..|.|.|+|.+.+..  |+.+.-+...
T Consensus        90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~---~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P  162 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTD---NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPP  162 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTC---CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCC
T ss_pred             ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCC---ceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCC
Confidence            478899999998888  5687776653221111   11000011  1111457899999999866665  7775432222


Q ss_pred             ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEE
Q 013578          330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW  380 (440)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i  380 (440)
                      +..       ...-+................+.|+++|.+.++. ++.++-
T Consensus       163 ~~~-------~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~Y~  205 (236)
T 1tl2_A          163 VSN-------QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKFYE  205 (236)
T ss_dssp             SST-------TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred             CCC-------CcccccccceeccCCcceEEEEEECCCCcEEEEe-CCeEEe
Confidence            110       0000000000011111223447799999988877 775544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.26  E-value=0.21  Score=50.72  Aligned_cols=34  Identities=21%  Similarity=0.048  Sum_probs=27.8

Q ss_pred             CcceeEEEEccC------CCEEEEeeC-CCcEEEEecCCCC
Q 013578           91 GDSVTGLCFSSD------GKCLATACA-DGVIRVHKLDDAS  124 (440)
Q Consensus        91 ~~~V~~l~~s~d------g~~l~t~s~-dg~v~vW~~~~~~  124 (440)
                      .+.|.|+++.|.      ++++|.|.. |++|+|+++.+.+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~  593 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE  593 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence            457999999863      369999996 9999999998543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.98  E-value=0.16  Score=44.18  Aligned_cols=66  Identities=17%  Similarity=0.143  Sum_probs=37.0

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeE-EecCCCCCCCceEEEccC---CCeEEEE
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL-RINLPPGGPPTAVAFADN---ATSIVVA  156 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~---~~~l~~~  156 (440)
                      -...+.|+|.|||++|+.+...|.|++++.+........-. ............++|+|+   +..|.++
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence            44678999999998344455679998887432111100000 011112345678899986   4444443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.98  E-value=0.069  Score=50.37  Aligned_cols=192  Identities=10%  Similarity=-0.071  Sum_probs=105.0

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCce-eeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                      .+.+..++++-...+.|..+++..... ...+.........+++++.++.|+.+. ..+.|.+.++....        ..
T Consensus        48 ~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--------~~  119 (619)
T 3s94_A           48 VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--------RK  119 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CE
T ss_pred             EeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--------EE
Confidence            444454566656667788888764422 222333334577899999666555554 56788888874322        11


Q ss_pred             eeeeccccceEEEEEcCCCCEEEEEeC--CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          293 MQLKGHKSAVTWLCFAPNSEQIITASK--DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                      ......-.....|+++|.+.+|+....  .+.|...++.....        ..+    ..  ........+++++++..|
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~--------~~l----~~--~~~~~P~Glald~~~~~L  185 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--------FII----IN--SEIYWPNGLTLDYEEQKL  185 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------EEE----EC--SSCSSEEEEEEETTTTEE
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce--------EEE----Ee--CCCCCCcEEEEEccCCEE
Confidence            111123345678999997655554442  35666666653211        000    00  011224579999987766


Q ss_pred             EEec--CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          371 AATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       371 ~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ..++  .+.|..++.......... .+......+|++..+         .++++-...+.|...+..+++
T Consensus       186 Y~aD~~~~~I~~~~~dG~~~~~~~-~~~~~~P~gi~~~~~---------~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          186 YWADAKLNFIHKSNLDGTNRQAVV-KGSLPHPFALTLFED---------ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             EEEETTTCCEEEESSSCCEEC----------CCCEEESSS---------EEEEECTTTCSEEEEESSSCC
T ss_pred             EEEeCCCCeEEEecCCCCccEEEE-eCCCCCceEEEEeCC---------EEEEecCCCCEEEEEECCCCc
Confidence            6554  578888888654333222 222233456777665         466666667778888876654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.85  E-value=0.032  Score=48.76  Aligned_cols=74  Identities=14%  Similarity=0.122  Sum_probs=57.2

Q ss_pred             eeeEEeCCCCCEEEEecCCEEEEEEcCCccchh------------hhhcc-----ccCCeEEEEecCCCCCCCCCcceEE
Q 013578          358 YDRLSLSSDGKILAATHGSTLQWLSVETGKVLD------------TAEKA-----HEGEITCMAWAPKTIPMGNQQVSVL  420 (440)
Q Consensus       358 v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~------------~~~~~-----h~~~v~~v~~~~~~~~~~~~~~~~l  420 (440)
                      +..+..+|+|.+||..++..|.|..+..+....            .+.-+     ...+|..+.|||-+     ..+..|
T Consensus        68 i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~-----~~ds~L  142 (452)
T 3pbp_A           68 TFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKS-----YRDSCI  142 (452)
T ss_dssp             TCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTB-----GGGCEE
T ss_pred             eeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEecccc-----CCCCeE
Confidence            567999999999999999999999887432110            11101     24679999999987     444689


Q ss_pred             EEeeCCCeEEEEeCCC
Q 013578          421 ATSSVDKKVKLWLAPS  436 (440)
Q Consensus       421 ~t~~~Dg~i~vw~~~~  436 (440)
                      ++-..|+.||+||+..
T Consensus       143 VVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          143 VVLKEDDTITMFDILN  158 (452)
T ss_dssp             EEEETTSCEEEEETTC
T ss_pred             EEEecCCEEEEEEccc
Confidence            9999999999999986

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.77  E-value=0.38  Score=45.44  Aligned_cols=139  Identities=10%  Similarity=-0.018  Sum_probs=73.2

Q ss_pred             CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578          227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW  304 (440)
Q Consensus       227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (440)
                      ..+.|.+.++........+...-.....++++|....|+....  .+.|...++....         ...+...-.....
T Consensus       100 ~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---------~~~l~~~~~~P~G  170 (628)
T 4a0p_A          100 GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---------RTTLVPNVGRANG  170 (628)
T ss_dssp             TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---------CEEEECSCSSEEE
T ss_pred             CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---------eEEEECCCCCcce
Confidence            3445555555432221112122334578999987666666653  3455555543221         1111123456789


Q ss_pred             EEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEE
Q 013578          305 LCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLS  382 (440)
Q Consensus       305 ~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d  382 (440)
                      |++++++..|+.+ ...+.|...|+.....        ..+    .....+   ...+++.. +.++.+- ..+.|...|
T Consensus       171 lalD~~~~~LY~aD~~~~~I~~~d~dG~~~--------~v~----~~~l~~---P~glav~~-~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          171 LTIDYAKRRLYWTDLDTNLIESSNMLGLNR--------EVI----ADDLPH---PFGLTQYQ-DYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEE----EECCSC---EEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             EEEccccCEEEEEECCCCEEEEEcCCCCce--------EEe----eccCCC---ceEEEEEC-CEEEEecCCCCEEEEEE
Confidence            9999977666555 4567899999874321        111    011112   22466654 3333332 367888888


Q ss_pred             cCCccchh
Q 013578          383 VETGKVLD  390 (440)
Q Consensus       383 ~~~~~~~~  390 (440)
                      ..+|+...
T Consensus       235 k~tg~~~~  242 (628)
T 4a0p_A          235 KTSGQNRT  242 (628)
T ss_dssp             TTTCCSCE
T ss_pred             CCCCCceE
Confidence            77765433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.27  E-value=0.61  Score=41.99  Aligned_cols=64  Identities=17%  Similarity=0.156  Sum_probs=38.0

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC-----CCCCCCceEEEccC---CCeEEEE
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL-----PPGGPPTAVAFADN---ATSIVVA  156 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~-----~~~~~v~~v~~~~~---~~~l~~~  156 (440)
                      -...+.|+|.|||+++++-...+.|++++..++...  .......     ...+.+..|+|+|+   +..|.++
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            446789999999987776544456877765443322  1111111     12345668999996   5554444

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.27  E-value=0.44  Score=40.27  Aligned_cols=184  Identities=6%  Similarity=0.072  Sum_probs=90.0

Q ss_pred             EEEEeeCC----ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC------CCEEEEEeEecCCCceeeee
Q 013578          221 IIASCSEG----TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT------ADVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       221 ~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~  290 (440)
                      +++.|+.+    ..+.+||..+.+-...-..........+..-++++++.|+.+      ..+.+||.....      +.
T Consensus        58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~------W~  131 (306)
T 3ii7_A           58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES------WH  131 (306)
T ss_dssp             EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE------EE
T ss_pred             EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc------eE
Confidence            56666644    568899988775432222111111122222367788888765      357778764321      22


Q ss_pred             eeeeeeccccceEEEEEcCCCCEEEEEeC---------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQIITASK---------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL  361 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  361 (440)
                      .+..+......-..+.+  ++..++.|+.         -..+.+||+.+..-...     ...+   .....+.    .+
T Consensus       132 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~-----~~~p---~~r~~~~----~~  197 (306)
T 3ii7_A          132 TKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL-----CPMI---EARKNHG----LV  197 (306)
T ss_dssp             EECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEE-----CCCS---SCCBSCE----EE
T ss_pred             eCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEEC-----CCcc---chhhcce----EE
Confidence            22222211111122222  5666666653         34588888876532211     0000   0111111    12


Q ss_pred             EeCCCCCEEEEec-C-----CEEEEEEcCCcc--chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-----Ce
Q 013578          362 SLSSDGKILAATH-G-----STLQWLSVETGK--VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-----KK  428 (440)
Q Consensus       362 ~~s~~g~~l~~~~-~-----~~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-----g~  428 (440)
                      .+  ++++++.|. +     ..+.+||..+.+  .+..+.. .......+.+  ++        .+++.||.+     ..
T Consensus       198 ~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~--------~i~v~GG~~~~~~~~~  264 (306)
T 3ii7_A          198 FV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW-KGVTVKCAAV--GS--------IVYVLAGFQGVGRLGH  264 (306)
T ss_dssp             EE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC-CBSCCEEEEE--TT--------EEEEEECBCSSSBCCE
T ss_pred             EE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC-CccceeEEEE--CC--------EEEEEeCcCCCeeeee
Confidence            22  566666543 2     568899988764  3322221 1112223333  33        688888854     46


Q ss_pred             EEEEeCCCC
Q 013578          429 VKLWLAPSL  437 (440)
Q Consensus       429 i~vw~~~~~  437 (440)
                      +.+||+.+.
T Consensus       265 ~~~yd~~~~  273 (306)
T 3ii7_A          265 ILEYNTETD  273 (306)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEcCCCC
Confidence            788887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.16  E-value=0.47  Score=40.08  Aligned_cols=104  Identities=6%  Similarity=-0.009  Sum_probs=53.1

Q ss_pred             EEEEeeC--CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeee
Q 013578          221 IIASCSE--GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       221 ~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      +++.|+.  ...+.+||..+.+-...-..........+..-++.+++.|+.+    ..+.+||.....      +..+..
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~------W~~~~~   87 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDS------WYSKLG   87 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTE------EEEEEC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCe------EEECCC
Confidence            5555554  3568999998765432211111111122222467777888755    456777754321      222222


Q ss_pred             eeccccceEEEEEcCCCCEEEEEeCC------CcEEEEecCccc
Q 013578          295 LKGHKSAVTWLCFAPNSEQIITASKD------GTLRVWNINVRY  332 (440)
Q Consensus       295 ~~~h~~~v~~~~~~p~~~~l~s~~~d------g~i~iwd~~~~~  332 (440)
                      +......-..+.+  ++..++.|+.+      ..+.+||..+..
T Consensus        88 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           88 PPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             CCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            2211122222233  66777777755      458888887653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.16  E-value=0.3  Score=44.03  Aligned_cols=61  Identities=16%  Similarity=0.200  Sum_probs=34.7

Q ss_pred             cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee------ccccceEEEEEcCC---CCEEEEE
Q 013578          251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK------GHKSAVTWLCFAPN---SEQIITA  317 (440)
Q Consensus       251 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~p~---~~~l~s~  317 (440)
                      ....++|.|+|+++++-...+.|++++...+   ...   .+..+.      ........|+|+|+   +.+|+.+
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g---~~~---~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESG---SVK---TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEE---EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCC---cEe---EEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            4568999999986665443346777753211   111   111121      12456789999995   4444433

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.12  E-value=0.51  Score=39.70  Aligned_cols=182  Identities=5%  Similarity=0.057  Sum_probs=88.4

Q ss_pred             EEEEeeCC-----ceEEEEeCCCCc---eee--eeeCCCCcccEEEecCCCCeEEEEecCC-----CEEEEEeEecCCCc
Q 013578          221 IIASCSEG-----TDISIWHGKTGK---LLG--NVDTNQLKNNMAAISPNGRFLAAAAFTA-----DVKVWEIVYSKDGL  285 (440)
Q Consensus       221 ~l~s~~~d-----~~i~vwd~~~~~---~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~  285 (440)
                      +++.|+.+     ..+.+||+.+.+   -..  .+........++.  .++++++.|+.++     .+.+||+....   
T Consensus        65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~---  139 (301)
T 2vpj_A           65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQ---  139 (301)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE---
T ss_pred             EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCe---
Confidence            55666543     458999988765   322  2222111122222  3677788877543     46677753321   


Q ss_pred             eeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC-----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeee
Q 013578          286 VKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD-----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR  360 (440)
Q Consensus       286 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  360 (440)
                         +..+..+......-..+.+  ++..++.|+.+     ..+.+||+.+..-...     ...+   .....+.    .
T Consensus       140 ---W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-----~~~p---~~r~~~~----~  202 (301)
T 2vpj_A          140 ---WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-----TPMA---TKRSGAG----V  202 (301)
T ss_dssp             ---EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-----CCCS---SCCBSCE----E
T ss_pred             ---EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC-----CCCC---cccccce----E
Confidence               2222222211111222222  66777777654     3588888876533211     0011   0111111    1


Q ss_pred             EEeCCCCCEEEEec-C-----CEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-----C
Q 013578          361 LSLSSDGKILAATH-G-----STLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-----K  427 (440)
Q Consensus       361 ~~~s~~g~~l~~~~-~-----~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-----g  427 (440)
                      +.  -++++++.|. +     ..+.+||..+.+-  +..+.... .....+.+  ++        .+++.||.+     .
T Consensus       203 ~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r-~~~~~~~~--~~--------~i~v~GG~~~~~~~~  269 (301)
T 2vpj_A          203 AL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR-CYVGATVL--RG--------RLYAIAGYDGNSLLS  269 (301)
T ss_dssp             EE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEE--TT--------EEEEECCBCSSSBEE
T ss_pred             EE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc-cceeEEEE--CC--------EEEEEcCcCCCcccc
Confidence            22  2566666543 2     5789999987653  22221111 11122222  33        688888766     4


Q ss_pred             eEEEEeCCCC
Q 013578          428 KVKLWLAPSL  437 (440)
Q Consensus       428 ~i~vw~~~~~  437 (440)
                      .+.+||+.+.
T Consensus       270 ~v~~yd~~~~  279 (301)
T 2vpj_A          270 SIECYDPIID  279 (301)
T ss_dssp             EEEEEETTTT
T ss_pred             cEEEEcCCCC
Confidence            5778887654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.96  E-value=1.7  Score=44.30  Aligned_cols=280  Identities=13%  Similarity=0.094  Sum_probs=141.2

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEecCCCCCc--c-eeeEEecCCCCCCCceEEEccC----CCeEEEEeecCCcceEEee
Q 013578           96 GLCFSSDGKCLATACADGVIRVHKLDDASSK--S-FKFLRINLPPGGPPTAVAFADN----ATSIVVATHNLSGCSLYMY  168 (440)
Q Consensus        96 ~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~--~-~~~~~~~~~~~~~v~~v~~~~~----~~~l~~~~~~~~~~~~~~~  168 (440)
                      ++++- ++.+|+.||..|.=.+|.+......  . .... .....-++|.+++....    ...+++++..+....+.+.
T Consensus       331 sl~~l-~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~-~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~l  408 (1158)
T 3ei3_A          331 CLTYL-DNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAM-ETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRII  408 (1158)
T ss_dssp             EEEEC-STTEEEEECSSSCEEEEEECSSCCTTSCCEEEE-EEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEE
T ss_pred             EEEEE-CCCEEEEEEecCCcEEEEEecCCCCccceEEeE-eeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEE
Confidence            34444 3448889999888888888754321  1 1222 22344478888877542    3477777777666677665


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN  248 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  248 (440)
                      ...-.......   ..+++....|......               ....+. +++.+..+.+ .++.+. ++.+..+...
T Consensus       409 r~Gi~~~~~~~---~~l~gv~~iWtl~~~~---------------~~~~~~-yLvlS~~~~T-~Vl~i~-~e~veev~~~  467 (1158)
T 3ei3_A          409 RNGIGIHEHAS---IDLPGIKGLWPLRSDP---------------NRETDD-TLVLSFVGQT-RVLMLN-GEEVEETELM  467 (1158)
T ss_dssp             EESBCEEEEEE---ECCCSCCEEEEECCCS---------------SCSSCC-EEEEEETTEE-EEEEEE-TTEEEEECCT
T ss_pred             ecCCCEEEEEe---ecCCCccEEEEEeecC---------------CCCCCC-EEEEECCCCe-EEEEEe-CCcccccccc
Confidence            44333221111   1233334455443210               011223 5555555554 444442 2233332211


Q ss_pred             CCcccEEEecCCCCeEEEEec---------CCCEEEEEeEecCCCceeeeeeeeeeecc-ccceEEEEEcCCCCEEEEEe
Q 013578          249 QLKNNMAAISPNGRFLAAAAF---------TADVKVWEIVYSKDGLVKAVTSVMQLKGH-KSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~  318 (440)
                             .|..+...|+++..         ...|++.+.....        .+..+... ...|...+.+  +.+++.++
T Consensus       468 -------gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~--------~~~~w~~p~~~~I~~As~n--~~~vvva~  530 (1158)
T 3ei3_A          468 -------GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKA--------LVSEWKEPQAKNISVASCN--SSQVVVAV  530 (1158)
T ss_dssp             -------TCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCC--------EEEEECCTTCCCCCEEEEC--SSEEEEEE
T ss_pred             -------cccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCe--------EEEEEECCCCCEEEEEEeC--CCEEEEEE
Confidence                   12222333333321         2335555532211        23333322 2356666654  34666664


Q ss_pred             CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC------CCEEEEec--CCEEEEEEcCCccchh
Q 013578          319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD------GKILAATH--GSTLQWLSVETGKVLD  390 (440)
Q Consensus       319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~~~--~~~i~i~d~~~~~~~~  390 (440)
                       ++.+.++.+..+.. ..    ...     ..   -...|.|+++.|.      ++++++|.  |+.++|+++.+.+.+.
T Consensus       531 -g~~l~~fel~~~~L-~~----~~~-----~~---l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~  596 (1158)
T 3ei3_A          531 -GRALYYLQIHPQEL-RQ----ISH-----TE---MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH  596 (1158)
T ss_dssp             -TTEEEEEEEETTEE-EE----EEE-----EE---CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             -CCEEEEEEeeCCce-ee----ecc-----cC---CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence             57788887764321 00    000     00   1234788888764      36888875  8999999998766553


Q ss_pred             hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ...-+......++.+..-+     + ..+|..|-.||.+..+.++
T Consensus       597 ~~~L~~~~~p~si~l~~~~-----~-~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          597 KEMLGGEIIPRSILMTTFE-----S-SHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             EEECCSSCCEEEEEEEEET-----T-EEEEEEEETTSEEEEEEEC
T ss_pred             EEECCCCCCCcEEEEEEeC-----C-CcEEEEEeCCCeEEEEEEc
Confidence            3211112233444333211     1 1688899899998776654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.93  E-value=0.58  Score=39.59  Aligned_cols=176  Identities=12%  Similarity=0.070  Sum_probs=83.6

Q ss_pred             ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC-----CCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578          229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT-----ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT  303 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~  303 (440)
                      ..+.+||+.+.+-...-..........+..-++++++.|+.+     ..+.+||+....      +..+..+......-.
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~------W~~~~~~p~~r~~~~  163 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE------WHLVAPMLTRRIGVG  163 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE------EEECCCCSSCCBSCE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe------EeECCCCCccccceE
Confidence            358889988765332211111111111222367777777654     356777764321      222222221111222


Q ss_pred             EEEEcCCCCEEEEEeCC-----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C--
Q 013578          304 WLCFAPNSEQIITASKD-----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G--  375 (440)
Q Consensus       304 ~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~--  375 (440)
                      .+.+  ++.+++.|+.+     ..+.+||+.+..-...     ...+   .....+    ..+.+  ++++++.|. +  
T Consensus       164 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-----~~~p---~~r~~~----~~~~~--~~~iyv~GG~~~~  227 (308)
T 1zgk_A          164 VAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-----TAMN---TIRSGA----GVCVL--HNCIYAAGGYDGQ  227 (308)
T ss_dssp             EEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-----CCCS---SCCBSC----EEEEE--TTEEEEECCBCSS
T ss_pred             EEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-----CCCC---Cccccc----eEEEE--CCEEEEEeCCCCC
Confidence            2333  56677777654     4588888876533211     0011   011111    11222  566666553 2  


Q ss_pred             ---CEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-----CeEEEEeCCCC
Q 013578          376 ---STLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-----KKVKLWLAPSL  437 (440)
Q Consensus       376 ---~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-----g~i~vw~~~~~  437 (440)
                         ..+.+||+.+.+-  +..+.... .....+ .. ++        .+++.||.+     ..+.+||+.+.
T Consensus       228 ~~~~~v~~yd~~~~~W~~~~~~p~~r-~~~~~~-~~-~~--------~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          228 DQLNSVERYDVETETWTFVAPMKHRR-SALGIT-VH-QG--------RIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             SBCCCEEEEETTTTEEEECCCCSSCC-BSCEEE-EE-TT--------EEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CccceEEEEeCCCCcEEECCCCCCCc-cceEEE-EE-CC--------EEEEEcCcCCCcccceEEEEcCCCC
Confidence               5789999887642  22221111 111222 22 33        688888764     35778887654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.89  E-value=1.2  Score=41.99  Aligned_cols=158  Identities=12%  Similarity=-0.019  Sum_probs=82.2

Q ss_pred             cceeEEEEccCCCE-EEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578           92 DSVTGLCFSSDGKC-LATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE  170 (440)
Q Consensus        92 ~~V~~l~~s~dg~~-l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~  170 (440)
                      .....|++.+.+.. .++-...+.|.+.+++.....   .+  ....-.....|++.|.+..|..+.... ...+...+.
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~---~l--~~~~l~~P~~Iavdp~~g~ly~tD~g~-~~~I~r~~~  157 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK---VL--FWQELDQPRAIALDPSSGFMYWTDWGE-VPKIERAGM  157 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EE--ECSSCSCCCCEEEETTTTEEEEEECSS-SCEEEEEET
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE---EE--EeCCCCCCceEEEecCCCeEEEeccCC-CCEEEEEEC
Confidence            46889999985554 445556788999998754321   11  112335688999999877666654321 123332222


Q ss_pred             ccccccccccccCCCCCCceeecccccccceeEE--EeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578          171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAIL--TLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN  248 (440)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  248 (440)
                      ....                         ...+.  ....+..+.+.++++.+.++-...+.|..+|+............
T Consensus       158 dG~~-------------------------~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~  212 (619)
T 3s94_A          158 DGSS-------------------------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS  212 (619)
T ss_dssp             TSCS-------------------------CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------
T ss_pred             CCCc-------------------------eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC
Confidence            1110                         00000  11123334445665646666666777988888643222222212


Q ss_pred             CCcccEEEecCCCCeEEEEecCCCEEEEEeEec
Q 013578          249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS  281 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  281 (440)
                      ......+++..+ ..+++-..++.|...|...+
T Consensus       213 ~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          213 LPHPFALTLFED-ILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             ---CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred             CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence            223345676655 33334345677877776444

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.88  E-value=0.27  Score=42.66  Aligned_cols=149  Identities=14%  Similarity=0.144  Sum_probs=74.4

Q ss_pred             cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceee-eeee-eeeeccccceEEEEEcCC---CCEEEEE-eC-----
Q 013578          251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKA-VTSV-MQLKGHKSAVTWLCFAPN---SEQIITA-SK-----  319 (440)
Q Consensus       251 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~-~~~~~h~~~v~~~~~~p~---~~~l~s~-~~-----  319 (440)
                      ....++|.|+|+.|+++...|.|++++..    +.... ...+ ............|+++|+   +..|+.+ +.     
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~----g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG----KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT----TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC----CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            45789999999845566678988888731    11100 0001 011122345789999995   4444433 32     


Q ss_pred             --CCcEEEEecCccccccCCCCccccc--cccccCCCCCeeeeeeEEeCCCCCEEEEe-c-------------CCEEEEE
Q 013578          320 --DGTLRVWNINVRYHLDEDPKTLKVL--PIPLLDSNGATLQYDRLSLSSDGKILAAT-H-------------GSTLQWL  381 (440)
Q Consensus       320 --dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~-------------~~~i~i~  381 (440)
                        ...|..|++......   ....+.+  ..+......|  .-..++|.|||.+.++. +             .+.|.-+
T Consensus        95 ~~~~~v~r~~~~~~~~~---~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri  169 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSK---VTDFRTVFRQMPKLSTGNH--FGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRL  169 (353)
T ss_dssp             CEEEEEEEEEECTTSSB---EEEEEEEEECSSCCBSSSC--CCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEE
T ss_pred             CceeEEEEEEECCCCCC---CCceEEEEEECCCCCCCcc--cCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEE
Confidence              224666665422100   0000000  0110001112  13469999999766653 3             1467777


Q ss_pred             EcCCcc------------chhhhhccccCCeEEEEecC-CC
Q 013578          382 SVETGK------------VLDTAEKAHEGEITCMAWAP-KT  409 (440)
Q Consensus       382 d~~~~~------------~~~~~~~~h~~~v~~v~~~~-~~  409 (440)
                      +....-            ....+..+| .....++|+| ++
T Consensus       170 ~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g  209 (353)
T 2g8s_A          170 TDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSN  209 (353)
T ss_dssp             ETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTT
T ss_pred             CCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCC
Confidence            765320            112221233 3478899999 55

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.81  E-value=0.96  Score=46.36  Aligned_cols=165  Identities=12%  Similarity=0.154  Sum_probs=87.3

Q ss_pred             ceEEEEeCCC-CceeeeeeCC----CCcccEEEecCCCCeEEEEe-------cCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          229 TDISIWHGKT-GKLLGNVDTN----QLKNNMAAISPNGRFLAAAA-------FTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       229 ~~i~vwd~~~-~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      ..|+.|++.. ..+++.+..|    ...|.....+++.+|++..+       -.|.+.+|......         ...+.
T Consensus       125 ~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~---------sQ~ie  195 (1630)
T 1xi4_A          125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---------SQPIE  195 (1630)
T ss_pred             CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc---------chhhh
Confidence            3499999863 2344444333    34456667788889887654       35788999875443         34456


Q ss_pred             ccccceEEEEEc--CC-CCEEEEEeC---CCcEEEEecCcc-ccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-
Q 013578          297 GHKSAVTWLCFA--PN-SEQIITASK---DGTLRVWNINVR-YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-  368 (440)
Q Consensus       297 ~h~~~v~~~~~~--p~-~~~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-  368 (440)
                      ||-+.-..+...  +. ...++.+..   .+.+.|-++... ........  +...+..........+| .+..|+.-. 
T Consensus       196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k--k~~~~~~~~~~~~Dfpv-~~~vs~k~g~  272 (1630)
T 1xi4_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK--KAVDVFFPPEAQNDFPV-AMQISEKHDV  272 (1630)
T ss_pred             HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc--ccccccCCcccccCcce-EEEeccccCE
Confidence            665544444332  11 122332221   268888888542 11000111  11111111111122222 466666544 


Q ss_pred             EEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578          369 ILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       369 ~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~  406 (440)
                      ..+....|.+++||+.||.++..-. -....|...+-+
T Consensus       273 iy~itk~G~~~~~d~~t~~~i~~~r-is~~~iF~~~~~  309 (1630)
T 1xi4_A          273 VFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPH  309 (1630)
T ss_pred             EEEEecCceEEEEecccchhhhhcc-ccCCceEEeccC
Confidence            4455678999999999999887652 334445444433

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.62  E-value=0.85  Score=38.34  Aligned_cols=184  Identities=11%  Similarity=0.115  Sum_probs=86.8

Q ss_pred             EEEEeeCC-----ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC-----EEEEEeEecCCCceeeee
Q 013578          221 IIASCSEG-----TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD-----VKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       221 ~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~  290 (440)
                      +++.|+.+     ..+.+||..+.+-...-..........+..-++++++.|+.++.     +.+||+...      .+.
T Consensus        64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~------~W~  137 (302)
T 2xn4_A           64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSN------EWF  137 (302)
T ss_dssp             EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTT------EEE
T ss_pred             EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCC------eEe
Confidence            55566543     35888998876533221111111111122236778888876543     555654322      122


Q ss_pred             eeeeeeccccceEEEEEcCCCCEEEEEeCC-------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQIITASKD-------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                      .+..+.........+.+  ++..++.|+.+       ..+.+||+.+..-...     ...+   .....+     +++.
T Consensus       138 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-----~~~p---~~r~~~-----~~~~  202 (302)
T 2xn4_A          138 HVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI-----AEMS---TRRSGA-----GVGV  202 (302)
T ss_dssp             EECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE-----CCCS---SCCBSC-----EEEE
T ss_pred             ecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-----CCCc---cccccc-----cEEE
Confidence            22222211222222222  56666666542       3588888876532211     0011   011111     1221


Q ss_pred             CCCCCEEEEec-C-----CEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC-----eEE
Q 013578          364 SSDGKILAATH-G-----STLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK-----KVK  430 (440)
Q Consensus       364 s~~g~~l~~~~-~-----~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg-----~i~  430 (440)
                       -++++++.|. +     ..+.+||..+.+-  +..+..... .-..+.+  ++        .+++.||.++     .+.
T Consensus       203 -~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~~--~~--------~i~v~GG~~~~~~~~~v~  270 (302)
T 2xn4_A          203 -LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR-NAGVCAV--NG--------LLYVVGGDDGSCNLASVE  270 (302)
T ss_dssp             -ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEE--TT--------EEEEECCBCSSSBCCCEE
T ss_pred             -ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc-cCeEEEE--CC--------EEEEECCcCCCcccccEE
Confidence             2566666543 2     4789999887642  222211111 1112222  33        6888888764     478


Q ss_pred             EEeCCCC
Q 013578          431 LWLAPSL  437 (440)
Q Consensus       431 vw~~~~~  437 (440)
                      +||+.+.
T Consensus       271 ~yd~~~~  277 (302)
T 2xn4_A          271 YYNPTTD  277 (302)
T ss_dssp             EEETTTT
T ss_pred             EEcCCCC
Confidence            8887653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.56  E-value=0.89  Score=38.17  Aligned_cols=103  Identities=12%  Similarity=0.153  Sum_probs=52.1

Q ss_pred             EEEEeeCC-----ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC-----CCEEEEEeEecCCCceeeee
Q 013578          221 IIASCSEG-----TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT-----ADVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       221 ~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~  290 (440)
                      +++.|+.+     ..+.+||+.+.+-...-..........+..-++++++.|+.+     ..+.+||+....      +.
T Consensus       162 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~------W~  235 (301)
T 2vpj_A          162 IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS------WT  235 (301)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE------EE
T ss_pred             EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc------EE
Confidence            55665543     458899988765432211111111112222367788888764     457888864322      22


Q ss_pred             eeeeeeccccceEEEEEcCCCCEEEEEeCC-----CcEEEEecCcc
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQIITASKD-----GTLRVWNINVR  331 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~  331 (440)
                      .+..+.........+.+  +++.++.|+.+     ..|.+||+++.
T Consensus       236 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          236 TVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             ECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            22222211112222333  66677777755     35677887643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.52  E-value=0.96  Score=38.21  Aligned_cols=184  Identities=8%  Similarity=0.060  Sum_probs=87.3

Q ss_pred             EEEEeeC----CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec----C-----CCEEEEEeEecCCCcee
Q 013578          221 IIASCSE----GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF----T-----ADVKVWEIVYSKDGLVK  287 (440)
Q Consensus       221 ~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~  287 (440)
                      +++.|+.    -..+.+||..+.+-...-..............++.+++.|+.    +     ..+.+||+....     
T Consensus        27 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~-----  101 (308)
T 1zgk_A           27 IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ-----  101 (308)
T ss_dssp             EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE-----
T ss_pred             EEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe-----
Confidence            5565653    235889998876543221111111111122236777777765    2     356777754321     


Q ss_pred             eeeeeeeeeccccceEEEEEcCCCCEEEEEeCC-----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578          288 AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD-----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS  362 (440)
Q Consensus       288 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  362 (440)
                       +..+..+......-..+.+  ++..++.|+.+     ..+.+||+.+.......     .++   .....+.    .+.
T Consensus       102 -W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-----~~p---~~r~~~~----~~~  166 (308)
T 1zgk_A          102 -WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-----PML---TRRIGVG----VAV  166 (308)
T ss_dssp             -EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECC-----CCS---SCCBSCE----EEE
T ss_pred             -EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECC-----CCC---ccccceE----EEE
Confidence             2222222211222222333  56667776643     35788888765332110     011   0111111    122


Q ss_pred             eCCCCCEEEEec-C-----CEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-----CeE
Q 013578          363 LSSDGKILAATH-G-----STLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-----KKV  429 (440)
Q Consensus       363 ~s~~g~~l~~~~-~-----~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-----g~i  429 (440)
                      +  ++++++.|. +     ..+.+||..+.+-  +..+... ...-..+.+  ++        .+++.||.+     ..+
T Consensus       167 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~--------~iyv~GG~~~~~~~~~v  233 (308)
T 1zgk_A          167 L--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCVL--HN--------CIYAAGGYDGQDQLNSV  233 (308)
T ss_dssp             E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TT--------EEEEECCBCSSSBCCCE
T ss_pred             E--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccceEEEE--CC--------EEEEEeCCCCCCccceE
Confidence            2  566665543 2     5688999877642  2222111 111222223  33        678888765     458


Q ss_pred             EEEeCCCC
Q 013578          430 KLWLAPSL  437 (440)
Q Consensus       430 ~vw~~~~~  437 (440)
                      .+||+.+.
T Consensus       234 ~~yd~~~~  241 (308)
T 1zgk_A          234 ERYDVETE  241 (308)
T ss_dssp             EEEETTTT
T ss_pred             EEEeCCCC
Confidence            88887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.50  E-value=0.95  Score=38.05  Aligned_cols=184  Identities=13%  Similarity=0.161  Sum_probs=86.9

Q ss_pred             EEEEeeCC----ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC-----CEEEEEeEecCCCceeeeee
Q 013578          221 IIASCSEG----TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA-----DVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       221 ~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~  291 (440)
                      +++.|+.+    ..+..||+.+.+-...-..........+..-++.+++.|+.++     .+.+||.....      +..
T Consensus        18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~------W~~   91 (302)
T 2xn4_A           18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ------WTS   91 (302)
T ss_dssp             EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE------EEE
T ss_pred             EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc------eee
Confidence            55555543    3588899887653322111111111112223677888887553     47777754321      222


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEEEeCCC-----cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIITASKDG-----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD  366 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  366 (440)
                      +..+......-..+.+  ++..++.|+.++     .+.+||+.+......     ...+   .....+     +++. -+
T Consensus        92 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-----~~~p---~~r~~~-----~~~~-~~  155 (302)
T 2xn4_A           92 VANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-----APMN---TRRSSV-----GVGV-VG  155 (302)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-----CCCS---SCCBSC-----EEEE-ET
T ss_pred             CCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec-----CCCC---CcccCc-----eEEE-EC
Confidence            2222221222222223  567777777553     477788775432211     0011   011111     1222 25


Q ss_pred             CCEEEEec--------CCEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC-----eEEE
Q 013578          367 GKILAATH--------GSTLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK-----KVKL  431 (440)
Q Consensus       367 g~~l~~~~--------~~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg-----~i~v  431 (440)
                      +++++.|.        -..+.+||..+.+-  +..+..... ....+.+  ++        .+++.||.++     .+.+
T Consensus       156 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~--~~--------~iyv~GG~~~~~~~~~~~~  224 (302)
T 2xn4_A          156 GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-GAGVGVL--NN--------LLYAVGGHDGPLVRKSVEV  224 (302)
T ss_dssp             TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB-SCEEEEE--TT--------EEEEECCBSSSSBCCCEEE
T ss_pred             CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc-cccEEEE--CC--------EEEEECCCCCCcccceEEE
Confidence            66555542        24588999877642  222211111 1122222  33        6888887653     5778


Q ss_pred             EeCCCC
Q 013578          432 WLAPSL  437 (440)
Q Consensus       432 w~~~~~  437 (440)
                      ||+.+.
T Consensus       225 yd~~~~  230 (302)
T 2xn4_A          225 YDPTTN  230 (302)
T ss_dssp             EETTTT
T ss_pred             EeCCCC
Confidence            887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.39  E-value=0.91  Score=38.49  Aligned_cols=94  Identities=10%  Similarity=-0.043  Sum_probs=45.2

Q ss_pred             EEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC--------CCEEEEEeEecCCCceeeeeeeeeeeccccce
Q 013578          231 ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT--------ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV  302 (440)
Q Consensus       231 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v  302 (440)
                      +..||..+.+-...-..........+..-++++++.|+.+        ..+.+||.....      +..+..+......-
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~------W~~~~~~p~~r~~~  142 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK------WGESDPLPYVVYGH  142 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE------EEECCCCSSCCBSC
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc------EeECCCCCCcccce
Confidence            7788988765422211111111111122266777777742        347777764321      22222222111122


Q ss_pred             EEEEEcCCCCEEEEEeC-C-----CcEEEEecCccc
Q 013578          303 TWLCFAPNSEQIITASK-D-----GTLRVWNINVRY  332 (440)
Q Consensus       303 ~~~~~~p~~~~l~s~~~-d-----g~i~iwd~~~~~  332 (440)
                      ..+.  -+++.++.|+. +     ..+.+||..+..
T Consensus       143 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          143 TVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             EEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             eEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            2222  25667777765 2     368888887653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.19  E-value=1.5  Score=38.63  Aligned_cols=266  Identities=11%  Similarity=0.151  Sum_probs=141.0

Q ss_pred             CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCce
Q 013578          111 ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEI  190 (440)
Q Consensus       111 ~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (440)
                      .+..|.|-|+..+...    .+..    -...+.-.+|..+.++.-.    +..+.+++.+.........    +.....
T Consensus        46 ~~~~vvIiDl~~~~~~----~rrp----i~AdsAIMnP~~~iiALra----g~~lQiFnle~K~klks~~----~~e~Vv  109 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNP----IRRP----ISADSAIMNPASKVIALKA----GKTLQIFNIEMKSKMKAHT----MTDDVT  109 (494)
T ss_dssp             TCCEEEEEETTSTTSC----EEEE----CCCSEEEECSSSSCEEEEE----TTEEEEEETTTTEEEEEEE----CSSCCC
T ss_pred             CCCeEEEEECCCCCcc----eecc----cccceeeeCCCCcEEEEec----CCeEEEEchHHhhhhccee----cCCCce
Confidence            3447888888876542    2222    1233556778877776664    4577777766543322221    122334


Q ss_pred             eecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-CceeeeeeCC----CCcccEEEecCCCCeEE
Q 013578          191 KWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GKLLGNVDTN----QLKNNMAAISPNGRFLA  265 (440)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~----~~~v~~~~~s~~~~~l~  265 (440)
                      .|......                      .|+..+ +..|+.|++.. ..+.+.+..|    ...|.....+++.++++
T Consensus       110 fWkWis~~----------------------~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~  166 (494)
T 1bpo_A          110 FWKWISLN----------------------TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLL  166 (494)
T ss_dssp             EEEEEETT----------------------EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEE
T ss_pred             EEEecCCC----------------------eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEE
Confidence            44432211                      333333 34599999964 3455555543    33455567788999988


Q ss_pred             EEe-------cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC---CEEEEEeCC---CcEEEEecCccc
Q 013578          266 AAA-------FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS---EQIITASKD---GTLRVWNINVRY  332 (440)
Q Consensus       266 ~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~~~d---g~i~iwd~~~~~  332 (440)
                      ..+       -.|.+.+|.....         ....+.||-+.-..+.+.-+.   ..|+.+...   +.++|-++....
T Consensus       167 l~GI~~~~~~v~G~mQLYS~er~---------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~  237 (494)
T 1bpo_A          167 LTGISAQQNRVVGAMQLYSVDRK---------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP  237 (494)
T ss_dssp             EEEEEEETTEEEEEEEEEESTTC---------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCC
T ss_pred             EEeecccCCcccceEEEeecccc---------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCc
Confidence            654       2467888886433         345567776655554443211   234444332   688888885431


Q ss_pred             cccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCC
Q 013578          333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP  411 (440)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  411 (440)
                      .- ..+-..+..............+| ++..|+.-. ..+....|.+++||++++.++..- +-..+.|..-+-+...  
T Consensus       238 ~~-~~~f~kk~vdv~fppe~~~DFPv-amqvs~kygviyviTK~G~i~lyDleTgt~i~~n-rIs~~~iF~t~~~~~~--  312 (494)
T 1bpo_A          238 TG-NQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN-RISGETIFVTAPHEAT--  312 (494)
T ss_dssp             TT-CCCCCCEEEECCCCTTSTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEEETTT--
T ss_pred             cC-CCCccceeeeeeCCcccccCcee-EEEecccCCEEEEEecCceEEEEecccceeeeee-cccCCceEEecccCCC--
Confidence            00 00111111111111112222333 466666544 444567899999999999988765 2344555554444332  


Q ss_pred             CCCCcceEEEEeeCCCeEEEEeCC
Q 013578          412 MGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       412 ~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                            .=++.....|.|.--.++
T Consensus       313 ------~Gi~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          313 ------AGIIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             ------TEEEEEETTCEEEEEEEC
T ss_pred             ------CcEEEEccCceEEEEEEc
Confidence                  224444466666544443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.11  E-value=1.6  Score=38.48  Aligned_cols=206  Identities=9%  Similarity=0.105  Sum_probs=114.9

Q ss_pred             EEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccc
Q 013578           97 LCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIST  176 (440)
Q Consensus        97 l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  176 (440)
                      .-.+|..+.||-=. ..++.|+|+++....    .....  ..+|.-=.|..+ +.|+.++.    ..++.|+....   
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~kl----ks~~~--~e~VvfWkWis~-~~l~lVT~----taVyHWsi~~~---  135 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKM----KAHTM--TDDVTFWKWISL-NTVALVTD----NAVYHWSMEGE---  135 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEE----EEEEC--SSCCCEEEEEET-TEEEEECS----SEEEEEESSSS---
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhh----cceec--CCCceEEEecCC-CeEEEEcC----CeeEEecccCC---
Confidence            34566666666544 678999999876421    11111  246766677654 34555553    37777776431   


Q ss_pred             ccccccCCCCCCceeeccccc-ccceeEEEeecccccccCCCCCeEEEEee------CCceEEEEeCCCCceeeeeeCCC
Q 013578          177 NEGKQQSKLPGPEIKWEHHKV-HDKRAILTLFGASATYGTADGSTIIASCS------EGTDISIWHGKTGKLLGNVDTNQ  249 (440)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~  249 (440)
                               ..+...++.+.. ...+++....       +++.+.++++|-      -.|.+.+|..+.+ ..+.+++|.
T Consensus       136 ---------s~P~kvFdR~~~L~~~QIInY~~-------d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha  198 (494)
T 1bpo_A          136 ---------SQPVKMFDRHSSLAGCQIINYRT-------DAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA  198 (494)
T ss_dssp             ---------CCCEEEEECCGGGTTCEEEEEEE-------CTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSE
T ss_pred             ---------CCchhheecchhcccceEEEEEE-------CCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeee
Confidence                     122233332221 1222332222       567775665553      3477889988744 445666665


Q ss_pred             CcccEEEecCC---CCeEEEEecC---CCEEEEEeEecCCCc-eeeeeeee---eeeccccceEEEEEcCCCCEEEEEeC
Q 013578          250 LKNNMAAISPN---GRFLAAAAFT---ADVKVWEIVYSKDGL-VKAVTSVM---QLKGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       250 ~~v~~~~~s~~---~~~l~~~~~d---g~i~i~d~~~~~~~~-~~~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                      .....+.+.-+   .+.|+.+...   ++++|.++.....+. ....+.+.   .-..-.+-..++..++.-..++.-+.
T Consensus       199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK  278 (494)
T 1bpo_A          199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK  278 (494)
T ss_dssp             EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred             eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence            43333322211   1244444432   789999985431111 11111111   11123455678999998888999999


Q ss_pred             CCcEEEEecCccccc
Q 013578          320 DGTLRVWNINVRYHL  334 (440)
Q Consensus       320 dg~i~iwd~~~~~~~  334 (440)
                      -|.|.+||++++.++
T Consensus       279 ~G~i~lyDleTgt~i  293 (494)
T 1bpo_A          279 YGYIHLYDLETGTCI  293 (494)
T ss_dssp             TSEEEEEETTTCCEE
T ss_pred             CceEEEEecccceee
Confidence            999999999988765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.73  E-value=1.8  Score=37.04  Aligned_cols=109  Identities=7%  Similarity=0.060  Sum_probs=61.0

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCC-CcccEEE---ecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQ-LKNNMAA---ISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQL  295 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~---~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~  295 (440)
                      +++.++.||.|.-+|..+|+.+-++.... .++....   ...++..++.. +.||.|+.++...+.    ..+  ....
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~----~~~--~~~~   85 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL----QKL--PLSI   85 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE----EEE--EEEH
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc----EEe--eecc
Confidence            78899999999999999999988876541 1211110   00123333343 578999888864332    111  0011


Q ss_pred             ec--cccceEE---EEE-c----CCCCEEEEEeCCCcEEEEecCcccccc
Q 013578          296 KG--HKSAVTW---LCF-A----PNSEQIITASKDGTLRVWNINVRYHLD  335 (440)
Q Consensus       296 ~~--h~~~v~~---~~~-~----p~~~~l~s~~~dg~i~iwd~~~~~~~~  335 (440)
                      ..  ...++..   ... .    ..+..+++|+.+|.+.-.|+++++.+.
T Consensus        86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W  135 (339)
T 2be1_A           86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS  135 (339)
T ss_dssp             HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred             ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence            10  1112221   000 0    034567888888888888887776553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.70  E-value=2.2  Score=43.88  Aligned_cols=190  Identities=11%  Similarity=0.114  Sum_probs=104.9

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      +|... +++.- ...++.++|+++...+......+. |..=.|-. .+.|+..+ +..|+-|++.... .      +...
T Consensus        74 nP~~~-iiALr-ag~~lQiFnl~~k~klks~~~~e~-VvfWkWis-~~~l~lVT-~~aVyHW~~~~~s-~------P~k~  141 (1630)
T 1xi4_A           74 NPASK-VIALK-AGKTLQIFNIEMKSKMKAHTMTDD-VTFWKWIS-LNTVALVT-DNAVYHWSMEGES-Q------PVKM  141 (1630)
T ss_pred             CCCcc-eEEEe-cCCeEEEeehHHhhhhcccccCCC-ceEEEecC-CCeeEEEc-CCeEEEeccCCCC-c------cHHH
Confidence            44444 44443 377899999999888877766443 43334432 23444443 5679999985321 1      2222


Q ss_pred             eecc----ccceEEEEEcCCCCEEEEEe-------CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          295 LKGH----KSAVTWLCFAPNSEQIITAS-------KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       295 ~~~h----~~~v~~~~~~p~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                      +..|    ...|..-..+++.++++..|       ..|.+.+|..+.+....               ..||...+..+..
T Consensus       142 fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~---------------iegha~~F~~~~~  206 (1630)
T 1xi4_A          142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---------------IEGHAASFAQFKM  206 (1630)
T ss_pred             HhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh---------------hhHhHhhhheecc
Confidence            2222    35688888899999876544       35788899887543211               1122111111111


Q ss_pred             C---CCCCEEEEe----cCCEEEEEEcCCc---cchh------hhh--ccccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578          364 S---SDGKILAAT----HGSTLQWLSVETG---KVLD------TAE--KAHEGEITCMAWAPKTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       364 s---~~g~~l~~~----~~~~i~i~d~~~~---~~~~------~~~--~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~  425 (440)
                      .   +...+++.+    .++.++|.++...   ....      ...  ..-.+-..++..++..        ..+..-+.
T Consensus       207 ~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~--------g~iy~itk  278 (1630)
T 1xi4_A          207 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH--------DVVFLITK  278 (1630)
T ss_pred             CCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc--------CEEEEEec
Confidence            1   111233322    2478888888543   1110      000  0112334455555554        57777788


Q ss_pred             CCeEEEEeCCCCCC
Q 013578          426 DKKVKLWLAPSLES  439 (440)
Q Consensus       426 Dg~i~vw~~~~~~~  439 (440)
                      -|.|.++|+.++.+
T Consensus       279 ~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          279 YGYIHLYDLETGTC  292 (1630)
T ss_pred             CceEEEEecccchh
Confidence            99999999998864

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.67  E-value=3.4  Score=40.07  Aligned_cols=186  Identities=10%  Similarity=0.095  Sum_probs=93.8

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      .|..++.+| +..||..+.+...........|.++.. .+| .|.+++.+ -+..||.....   ...... ........
T Consensus        75 ~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~---~~~~~~-~~~~l~~~  146 (758)
T 3ott_A           75 YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRK---LTSFDT-RRNGLPNN  146 (758)
T ss_dssp             EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCC---EEEECH-HHHCCSCS
T ss_pred             cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCe---EEEecc-CCCCcCCC
Confidence            455555665 788888765432211111223555543 344 56666665 46677753221   111000 00001134


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW  380 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i  380 (440)
                      .|.++....++.+.+ ++.+ -+..++..+....        .+..+.. .......|.++....++..|-.|.++.+..
T Consensus       147 ~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~--------~~~~~~~-~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~  215 (758)
T 3ott_A          147 TIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE--------GIPLPVH-SSQSNLFVNSLLEDTTRQCVWIGTEGYLFQ  215 (758)
T ss_dssp             CEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE--------EECCCCC-TTCSSCCEEEEEEETTTTEEEEEEEEEEEE
T ss_pred             eEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceE--------EecCCCc-cccccceeEEEEEECCCCEEEEEECCCCeE
Confidence            688888887777544 4444 4777776543211        0000000 001122366777777765333333457888


Q ss_pred             EEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          381 LSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       381 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      +|..+++..... ......|.++....++        . |..|+.+ -+.+++..+
T Consensus       216 ~~~~~~~~~~~~-~l~~~~i~~i~~d~~g--------~-lWigT~~-Gl~~~~~~~  260 (758)
T 3ott_A          216 YFPSTGQIKQTE-AFHNNSIKSLALDGNG--------D-LLAGTDN-GLYVYHNDT  260 (758)
T ss_dssp             EETTTTEEEEEE-EEEEEEEEEEEECTTC--------C-EEEEETT-EEEEECCTT
T ss_pred             EcCCCCeEEecc-CCCCCeEEEEEEcCCC--------C-EEEEeCC-ceeEEecCC
Confidence            998776542211 1123458888888776        3 4444544 477777654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.58  E-value=1.8  Score=36.59  Aligned_cols=92  Identities=10%  Similarity=0.055  Sum_probs=43.2

Q ss_pred             EEEEeCCCCceeee--eeCCCCcccEEEecCCCCeEEEEecC-------CCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578          231 ISIWHGKTGKLLGN--VDTNQLKNNMAAISPNGRFLAAAAFT-------ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA  301 (440)
Q Consensus       231 i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~  301 (440)
                      +..||..+.+-...  +.........+.  -++++++.|+.+       ..+.+||....      .+..+..+......
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~------~W~~~~~~p~~r~~  151 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGE--VDDKIYVVAGKDLQTEASLDSVLCYDPVAA------KWSEVKNLPIKVYG  151 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEE--ETTEEEEEEEEBTTTCCEEEEEEEEETTTT------EEEEECCCSSCEES
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEE--ECCEEEEEcCccCCCCcccceEEEEeCCCC------CEeECCCCCCcccc
Confidence            77888877654322  111111112222  267777777754       13556665322      12222211111111


Q ss_pred             eEEEEEcCCCCEEEEEeC------CCcEEEEecCccc
Q 013578          302 VTWLCFAPNSEQIITASK------DGTLRVWNINVRY  332 (440)
Q Consensus       302 v~~~~~~p~~~~l~s~~~------dg~i~iwd~~~~~  332 (440)
                      -..+.  .++..++.|+.      -..+.+||+.+..
T Consensus       152 ~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          152 HNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             CEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             cEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            11222  36666666664      2358889987653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.43  E-value=2.2  Score=36.82  Aligned_cols=49  Identities=6%  Similarity=-0.109  Sum_probs=25.8

Q ss_pred             ceEEEEeCCCCceeeeeeCCCC-cc-cEEEecCCCCeEEEEec------CCCEEEEEe
Q 013578          229 TDISIWHGKTGKLLGNVDTNQL-KN-NMAAISPNGRFLAAAAF------TADVKVWEI  278 (440)
Q Consensus       229 ~~i~vwd~~~~~~~~~~~~~~~-~v-~~~~~s~~~~~l~~~~~------dg~i~i~d~  278 (440)
                      ..+.+||..+.+-...-..... .. .+++. -++++++.|+.      ...+.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence            4689999887654322221111 11 22222 35677777764      335666765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.37  E-value=2.3  Score=36.78  Aligned_cols=64  Identities=13%  Similarity=0.054  Sum_probs=36.8

Q ss_pred             cccEEEe-------cCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578          251 KNNMAAI-------SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       251 ~v~~~~~-------s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                      ....++|       ..+|+++++....+.|...++....  .....  ...+.+....+..+++.|||.++++..
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g--~~~~~--~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNM--EVRKI--STFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGG--CEEEE--EEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCC--cccce--eeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            4556777       3567666665566677777765321  11111  111222245789999999997666553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.18  E-value=2.5  Score=36.50  Aligned_cols=64  Identities=11%  Similarity=0.035  Sum_probs=35.6

Q ss_pred             ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578          252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                      ...++| .+|+++++....+.|...++....... ... ....+-.....+..+++.|||.++++..
T Consensus       270 p~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~-~~~-~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          270 PGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRW-RVL-RVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEE-EEE-EEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CcceEE-ECCEEEEEECCCCEEEEEEECCCCcce-eec-chheecccCCCeeEEEECCCCcEEEEEe
Confidence            345666 466666655556677777765443110 000 0111112235789999999998666554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.90  E-value=5  Score=38.93  Aligned_cols=181  Identities=13%  Similarity=0.099  Sum_probs=90.1

Q ss_pred             eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee-e-eeccccceEEEEE
Q 013578          230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM-Q-LKGHKSAVTWLCF  307 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~-~~~h~~~v~~~~~  307 (440)
                      -+..+|..+++...........|.++....+|.+.+ |+.+| +.+++.....   ........ . ..-....|.++..
T Consensus       212 Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~G-l~~~~~~~~~---~~~~~~~~~~~~~l~~~~i~~i~~  286 (758)
T 3ott_A          212 YLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDNG-LYVYHNDTTP---LQHIIHDSRNIQSLTNNIIWNIFA  286 (758)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETTE-EEEECCTTSC---CEEECCCTTCTTSCSCSCEEEEEE
T ss_pred             CCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCCc-eeEEecCCCc---EEEEEcCCCCcCcCCcCeEEEEEE
Confidence            377788776543221111233577787777776554 55444 6666643221   11000000 0 0012345888888


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCcc
Q 013578          308 APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGK  387 (440)
Q Consensus       308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~  387 (440)
                      ..+|. |..|+..| +.++.....         .................|.++.-..+|.+.+++. +.+..++..+++
T Consensus       287 D~~g~-lWiGT~~G-l~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~-~Gl~~~~~~~~~  354 (758)
T 3ott_A          287 DQEHN-IWLGTDYG-ISLSRYNSA---------LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGA-NGLIRFTDPAGE  354 (758)
T ss_dssp             CTTCC-EEEEESSS-EEEECCCC----------CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEET-TEEEEESCTTSS
T ss_pred             cCCCC-EEEEeCCc-ccccccCCc---------eeEEecccCCCCCCCceEEEEEEcCCCCEEEeeC-Ccceeecccccc
Confidence            87776 44555556 544432211         0111000001111123477888888888777664 457677765532


Q ss_pred             c--hhhhh------ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          388 V--LDTAE------KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       388 ~--~~~~~------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      .  ...+.      .-....|.++.-..++        . |-.|. ++-+..|+..++
T Consensus       355 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--------~-lWigt-~~GL~~~~~~~~  402 (758)
T 3ott_A          355 RHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ--------Q-LWIAT-DGSINRYDYATR  402 (758)
T ss_dssp             CCCCEEECTTCSSSCCSCSCEEEEEECTTS--------C-EEEEE-TTEEEEEETTTT
T ss_pred             cceeEEeccCCcCCCCCCCceEEEEECCCC--------C-EEEEe-CCcHhhcCcCCC
Confidence            1  11110      0112358888887776        3 44444 456888877653

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.83  E-value=2.6  Score=35.44  Aligned_cols=140  Identities=9%  Similarity=0.082  Sum_probs=77.6

Q ss_pred             cCCCCCeEEEEeeCC-------------ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe--cCCCEEEEEe
Q 013578          214 GTADGSTIIASCSEG-------------TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA--FTADVKVWEI  278 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~  278 (440)
                      +.++|..+.++...+             ..|+..++...+... +...    ....+++++++|+-..  .++.-.||.+
T Consensus        60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~  134 (302)
T 3s25_A           60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD----PCIYASLIGNYIYYLHYDTQTATSLYRI  134 (302)
T ss_dssp             EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS----CEEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred             EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC----CccEEEEeCCEEEEEeecCCCCceEEEE
Confidence            356777555555443             468888877654332 3221    2346788999998876  4666667766


Q ss_pred             EecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578          279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ  357 (440)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (440)
                      .....       ....+..+..    .+++|+++.|+-.+. ...|..-++......        .    +..  +..  
T Consensus       135 ~~dGs-------~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--------~----l~~--~~~--  187 (302)
T 3s25_A          135 RIDGE-------EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--------L----FYD--CNC--  187 (302)
T ss_dssp             ETTSC-------CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE--------E----EEC--SCE--
T ss_pred             ECCCC-------CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE--------E----EeC--CCc--
Confidence            54331       1222322322    456778888775554 567777777643211        0    011  111  


Q ss_pred             eeeEEeCCCCCEEEEec---CCEEEEEEcCCcc
Q 013578          358 YDRLSLSSDGKILAATH---GSTLQWLSVETGK  387 (440)
Q Consensus       358 v~~~~~s~~g~~l~~~~---~~~i~i~d~~~~~  387 (440)
                        ...+.|++.+|+-..   +..|..-++....
T Consensus       188 --~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          188 --YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             --EEEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             --cceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence              123558888887643   2466666665544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.27  E-value=3.9  Score=39.16  Aligned_cols=154  Identities=12%  Similarity=0.122  Sum_probs=76.9

Q ss_pred             CCCeEEEEeeCC----ceEEEEeCCCCceeeee-e-------CCCCcccEEEecCCCCeEEEEecCC------CEEEEEe
Q 013578          217 DGSTIIASCSEG----TDISIWHGKTGKLLGNV-D-------TNQLKNNMAAISPNGRFLAAAAFTA------DVKVWEI  278 (440)
Q Consensus       217 ~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~-~-------~~~~~v~~~~~s~~~~~l~~~~~dg------~i~i~d~  278 (440)
                      ++. +++.|+.+    ..+.+||..+++-...- .       .......++.+..++++++.|+.++      .+.+||.
T Consensus       397 ~~~-iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          397 GND-VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SSC-EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             CCE-EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            444 66666643    45888998876543322 1       1111122233322778888887543      4667776


Q ss_pred             EecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC--cEEEEecCccccccCCCCccccccccccCCCCCee
Q 013578          279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL  356 (440)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (440)
                      ...      .+..+..+......- +++...++..++.|+.++  .+.+||..+..........  ..+   ....++  
T Consensus       476 ~t~------~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g--~~p---~~r~~~--  541 (695)
T 2zwa_A          476 KTR------EWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD--EFF---QNSLVS--  541 (695)
T ss_dssp             TTT------EEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSS--GGG---GSCCBS--
T ss_pred             CCC------cEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCC--CCC---Ccccce--
Confidence            432      122222222111111 223323777888887654  6899998865432111100  011   111111  


Q ss_pred             eeeeEEeCCC-CCEEEEec---C-----CEEEEEEcCCcc
Q 013578          357 QYDRLSLSSD-GKILAATH---G-----STLQWLSVETGK  387 (440)
Q Consensus       357 ~v~~~~~s~~-g~~l~~~~---~-----~~i~i~d~~~~~  387 (440)
                        ..+.+..+ +++++.|.   +     +.+.+||+.+.+
T Consensus       542 --~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          542 --AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             --CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             --eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence              23555555 66666543   2     468999988776

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.42  E-value=0.46  Score=43.20  Aligned_cols=79  Identities=16%  Similarity=0.165  Sum_probs=51.6

Q ss_pred             ccEEEecCCCCeEEEEec-CCCEEEEEeEecCC---Cce-eee-eeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578          252 NNMAAISPNGRFLAAAAF-TADVKVWEIVYSKD---GLV-KAV-TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV  325 (440)
Q Consensus       252 v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~---~~~-~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i  325 (440)
                      ...+.++|||+++++++. +.++.++|+..-.+   ... ... ....... -.-.....+|.++|.-..|.-.|..|..
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence            456889999999888764 78899999863210   000 000 0111222 2334678899999965556668999999


Q ss_pred             EecCcc
Q 013578          326 WNINVR  331 (440)
Q Consensus       326 wd~~~~  331 (440)
                      |++...
T Consensus       404 Wni~~a  409 (638)
T 3sbq_A          404 WNMEEA  409 (638)
T ss_dssp             EEHHHH
T ss_pred             EeccHH
Confidence            999754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.29  E-value=5  Score=34.51  Aligned_cols=57  Identities=14%  Similarity=0.127  Sum_probs=28.8

Q ss_pred             EEEEee-CCceEEEEeCCC--Cce--eeeee-CCCCcccEEEecCCCCeEEEEec-C---------CCEEEEEeE
Q 013578          221 IIASCS-EGTDISIWHGKT--GKL--LGNVD-TNQLKNNMAAISPNGRFLAAAAF-T---------ADVKVWEIV  279 (440)
Q Consensus       221 ~l~s~~-~d~~i~vwd~~~--~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~i~d~~  279 (440)
                      +++.|+ ....+.+||+.+  .+-  +..+. .......++.  -++++++.|+. +         ..+.+||+.
T Consensus        22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~   94 (357)
T 2uvk_A           22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK   94 (357)
T ss_dssp             EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred             EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence            444444 445689999864  322  22222 1111112222  35777777775 2         357777764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.11  E-value=3  Score=37.53  Aligned_cols=58  Identities=19%  Similarity=0.096  Sum_probs=34.0

Q ss_pred             cccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeee-ee-e----ccccceEEEEEcCC
Q 013578          251 KNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVM-QL-K----GHKSAVTWLCFAPN  310 (440)
Q Consensus       251 ~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~-~----~h~~~v~~~~~~p~  310 (440)
                      ....|+|.|+|. .|+++...|.|++++.......  .....+. .+ .    ........|+|+|+
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~--~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFK--EPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCS--SCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeee--eeecCCcceeccCccccCCCcceeeEeCCC
Confidence            356889999996 5667778999988863211000  0000110 11 1    12456789999996

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.82  E-value=6.2  Score=32.71  Aligned_cols=166  Identities=14%  Similarity=0.061  Sum_probs=82.9

Q ss_pred             CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578          228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF  307 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (440)
                      |+.|+.|-....-.+..-......|..++...... ++. . ||.|+.|-.....  +...  +.    .-...|..++.
T Consensus        41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~G--qlg~--P~----~~~~~v~~ia~  109 (282)
T 3qhy_B           41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDG--QTTV--PA----EARSGVDAIAA  109 (282)
T ss_dssp             TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTS--TTCC--CG----GGSSSEEEEEE
T ss_pred             CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCC--CCCC--Cc----ccCCCeEEEEC
Confidence            88999997554322211111123566666554433 333 4 8999888754322  1100  00    01246777776


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCcc
Q 013578          308 APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGK  387 (440)
Q Consensus       308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~  387 (440)
                      ..+  +.+.-. ||.|..|-......+..          +..    ....|..++...+..++. . ++.|+.|-....-
T Consensus       110 G~~--hs~al~-~G~v~~wG~n~~gqlg~----------~~~----~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~g  170 (282)
T 3qhy_B          110 GAW--ASYALK-DGKVIAWGDDSDGQTTV----------PAE----AQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFG  170 (282)
T ss_dssp             ETT--EEEEEE-TTEEEEEECCTTSTTSC----------CGG----GGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTS
T ss_pred             cCC--EEEEEe-CCeEEEecCCCCCcCCC----------Ccc----CCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCC
Confidence            543  333444 89999998764333210          000    011244454443333332 3 6777777654422


Q ss_pred             chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       388 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      .+..- ..-...|..|+....         ..++.  .||.|..|-..
T Consensus       171 qlg~p-~~~~~~v~~i~~G~~---------hs~al--~~G~v~~wG~n  206 (282)
T 3qhy_B          171 QTTVP-AEAQSGVDDVAGGIF---------HSLAL--KDGKVIAWGDN  206 (282)
T ss_dssp             TTSCC-GGGGSSEEEEEECSS---------EEEEE--ETTEEEEEECC
T ss_pred             CCCCc-eecCCCeEEEEecCC---------EEEEE--ECCeEEEEECC
Confidence            22111 112345777776655         34444  48888888644

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.76  E-value=6.7  Score=32.99  Aligned_cols=182  Identities=7%  Similarity=0.050  Sum_probs=86.7

Q ss_pred             EEEEeeCCceEEEEeCCCCceee-eeeCCCCcccEEEecCCCCeEEEEec----CC-------CEEEEEeEecCCCceee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLG-NVDTNQLKNNMAAISPNGRFLAAAAF----TA-------DVKVWEIVYSKDGLVKA  288 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~~~  288 (440)
                      +++.|+  ..+..||..+++-.. .+..........+...++++++.|+.    ++       .+.+||....      .
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~------~   78 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS------E   78 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT------E
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC------e
Confidence            455555  469999998876432 11111122333344457788888874    11       1555554322      1


Q ss_pred             eeeeeeeeccccceEEEEEcCCCCEEEEEeCC--------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeee
Q 013578          289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKD--------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR  360 (440)
Q Consensus       289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  360 (440)
                      +..+..+......-..+.+  ++..++.|+.+        ..+.+||..+..-...     ..++.   ...++     +
T Consensus        79 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~-----~~~p~---~r~~~-----~  143 (315)
T 4asc_A           79 WLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES-----DPLPY---VVYGH-----T  143 (315)
T ss_dssp             EEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC-----CCCSS---CCBSC-----E
T ss_pred             EEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC-----CCCCC---cccce-----e
Confidence            2222222111111122222  56666666632        3588888876532211     00110   11111     1


Q ss_pred             EEeCCCCCEEEEec--C-----CEEEEEEcCCcc--chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC----
Q 013578          361 LSLSSDGKILAATH--G-----STLQWLSVETGK--VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK----  427 (440)
Q Consensus       361 ~~~s~~g~~l~~~~--~-----~~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg----  427 (440)
                      ++. .++++++.|.  +     ..+.+||..+.+  .+..+..+ ...-.++.+  ++        .+++.||.++    
T Consensus       144 ~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~--------~iyv~GG~~~~~~~  211 (315)
T 4asc_A          144 VLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA-RSLFGATVH--DG--------RIIVAAGVTDTGLT  211 (315)
T ss_dssp             EEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TT--------EEEEEEEECSSSEE
T ss_pred             EEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc-hhceEEEEE--CC--------EEEEEeccCCCCcc
Confidence            222 4556555543  1     478999988764  22222111 111122222  33        6788887654    


Q ss_pred             -eEEEEeCCCC
Q 013578          428 -KVKLWLAPSL  437 (440)
Q Consensus       428 -~i~vw~~~~~  437 (440)
                       .+.+||+.+.
T Consensus       212 ~~~~~yd~~~~  222 (315)
T 4asc_A          212 SSAEVYSITDN  222 (315)
T ss_dssp             EEEEEEETTTT
T ss_pred             ceEEEEECCCC
Confidence             4777887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.07  E-value=8.4  Score=33.03  Aligned_cols=110  Identities=16%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             cccccccCCCCCeEEEEeeCCceEEEEeCCCCcee--eee----eCCCCcccEEEecCC---CCeEEEE-e--cCCCEEE
Q 013578          208 GASATYGTADGSTIIASCSEGTDISIWHGKTGKLL--GNV----DTNQLKNNMAAISPN---GRFLAAA-A--FTADVKV  275 (440)
Q Consensus       208 ~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~----~~~~~~v~~~~~s~~---~~~l~~~-~--~dg~i~i  275 (440)
                      .+..+.+.|+|+ ++++-...|.|++++...++..  ..+    .........++++|+   +..|++. +  .++.|.-
T Consensus        33 ~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           33 SPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            344566688887 6666555889999987655432  211    122445678999995   3444443 2  2333443


Q ss_pred             EEeEecCC--Cceeeeeee-eeee-ccccceEEEEEcCCCCEEEEEe
Q 013578          276 WEIVYSKD--GLVKAVTSV-MQLK-GHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       276 ~d~~~~~~--~~~~~~~~~-~~~~-~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                      |.+.....  ......+.+ ..+. +....-..|.|.|||.++++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            43322110  011111111 1121 1112345799999998777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.40  E-value=15  Score=35.09  Aligned_cols=115  Identities=7%  Similarity=0.006  Sum_probs=58.6

Q ss_pred             CCCeEEEEeeCCc--eEEEEeCCCCceeeee-----eCCCCcccEEEecCC-CCeEEEEec--C-----CCEEEEEeEec
Q 013578          217 DGSTIIASCSEGT--DISIWHGKTGKLLGNV-----DTNQLKNNMAAISPN-GRFLAAAAF--T-----ADVKVWEIVYS  281 (440)
Q Consensus       217 ~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~s~~-~~~l~~~~~--d-----g~i~i~d~~~~  281 (440)
                      ++. +++.|+.++  .+.+||..+.+-...-     ........++.+..+ +++++.|+.  +     ..+.+||+...
T Consensus       500 ~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          500 DGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             TSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             CCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            555 666666543  6899999876543221     112222333555655 677788875  2     34778887554


Q ss_pred             CCCceeeeeeeeeee-ccccceEEEEEcCCCCEEEEEeCC--------CcEEEEecCcccc
Q 013578          282 KDGLVKAVTSVMQLK-GHKSAVTWLCFAPNSEQIITASKD--------GTLRVWNINVRYH  333 (440)
Q Consensus       282 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~~d--------g~i~iwd~~~~~~  333 (440)
                      .-.....+..+.... ........+ ...++..++.|+.+        ..|.+||+.+...
T Consensus       579 ~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          579 NATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             CSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             ccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            310001122222211 111111222 33336777777742        4588999886543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=88.99  E-value=11  Score=32.79  Aligned_cols=175  Identities=11%  Similarity=0.054  Sum_probs=90.1

Q ss_pred             eEEEEeCCCC--ceeeeeeCC------CCcccEEEec---CC----CCeEEEEe-cCCCEEEEEeEecCCCceee----e
Q 013578          230 DISIWHGKTG--KLLGNVDTN------QLKNNMAAIS---PN----GRFLAAAA-FTADVKVWEIVYSKDGLVKA----V  289 (440)
Q Consensus       230 ~i~vwd~~~~--~~~~~~~~~------~~~v~~~~~s---~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~----~  289 (440)
                      .|.+||+.++  +.++.+...      ......+++.   ++    +.+++.+. ..+-|.+||+..++...+..    .
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            4778999998  888777543      2335567776   22    34555554 35668899986554221110    0


Q ss_pred             --eeeeeeecc----ccceEEEEEcCC----CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeee
Q 013578          290 --TSVMQLKGH----KSAVTWLCFAPN----SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD  359 (440)
Q Consensus       290 --~~~~~~~~h----~~~v~~~~~~p~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  359 (440)
                        .......|.    ...|..|+++|+    ++.|+-....+ -++|.+.+........  ...+  ......+....-.
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~--~~~v--~~~G~kg~~s~~~  278 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGG--KLNP--ELLGNRGKYNDAI  278 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTC--CCCC--EEEEECCTTCCEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcch--hhce--EEeeecCCCCCcc
Confidence              001111121    247899999998    77777666543 3566665443322111  1101  1111111111223


Q ss_pred             eEEeC-CCCCEEEEe-cCCEEEEEEcCC-c---cchhhhhc-cccCCeEEEEecCCC
Q 013578          360 RLSLS-SDGKILAAT-HGSTLQWLSVET-G---KVLDTAEK-AHEGEITCMAWAPKT  409 (440)
Q Consensus       360 ~~~~s-~~g~~l~~~-~~~~i~i~d~~~-~---~~~~~~~~-~h~~~v~~v~~~~~~  409 (440)
                      .+++. .+|.++.+- ..+.|..|+..+ .   +....+.. ..-.-+..+.+.+++
T Consensus       279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g  335 (381)
T 3q6k_A          279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKG  335 (381)
T ss_dssp             EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTS
T ss_pred             eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCC
Confidence            45665 567655553 478999999876 1   11222211 111236677777665

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=86.84  E-value=15  Score=31.88  Aligned_cols=264  Identities=11%  Similarity=0.040  Sum_probs=126.5

Q ss_pred             EccCCCEEEEeeCCCcEEEEecCCCC-----CcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccc
Q 013578           99 FSSDGKCLATACADGVIRVHKLDDAS-----SKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKA  173 (440)
Q Consensus        99 ~s~dg~~l~t~s~dg~v~vW~~~~~~-----~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  173 (440)
                      +-|+..++++.+.+|.|+--.+....     ...  ........+..+..+........++..+..+....+..++....
T Consensus         3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g--~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~   80 (370)
T 3l6v_A            3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRG--RSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEA   80 (370)
T ss_dssp             CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCC--SEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred             cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCC--ceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCC
Confidence            45778899999999999876543210     000  11222233455666666666677777777765555555554333


Q ss_pred             cccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-------ceeeeee
Q 013578          174 ISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-------KLLGNVD  246 (440)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~  246 (440)
                      .....+.....+         ........+.......   ...++. +++..+..|.++...+...       .....+.
T Consensus        81 ~r~a~G~~i~~l---------l~L~~~e~Iv~~~~~~---~~~~~~-~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~  147 (370)
T 3l6v_A           81 GSNARGRPIINW---------IPLESGERVQAVLPVR---EYADNR-YVFMATRNGTVKKTPLSEFAFRLARGKIAINLD  147 (370)
T ss_dssp             CTTSCCEEGGGS---------CCCCTTCCEEEEEEES---CCCTTC-EEEEEETTSEEEEEEGGGGCSCCTTCEESSCCC
T ss_pred             CcccCCcCHhhc---------cCCCCCCEEEEEEEec---cCCCCc-EEEEEeCCCeEEEeEHHHhhcccCCceEEEEeC
Confidence            222111111100         0000111111111100   011233 7888899999998775432       1222232


Q ss_pred             CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCC-CceeeeeeeeeeeccccceEEEEEcC----------------
Q 013578          247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD-GLVKAVTSVMQLKGHKSAVTWLCFAP----------------  309 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~p----------------  309 (440)
                      . ...+..+........++..+.+|.+..++...-.. +..........+. ....|.++...+                
T Consensus       148 ~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~  225 (370)
T 3l6v_A          148 E-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEE  225 (370)
T ss_dssp             T-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC--------------
T ss_pred             C-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccc
Confidence            2 23344444444556788888899888777532110 0000001112222 224455544433                


Q ss_pred             -------------------CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578          310 -------------------NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL  370 (440)
Q Consensus       310 -------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  370 (440)
                                         ++..+++.+..|..+...+...............+.  .....+.  -+.......+..++
T Consensus       226 ~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k--~~~~~g~--lv~~~~v~~~d~i~  301 (370)
T 3l6v_A          226 VVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQ--TTERNGK--LVRAVLLGSTDEVM  301 (370)
T ss_dssp             ---------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSC--CCTTTCS--EEEEEEECTTCEEE
T ss_pred             cccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEE--ecCCCCc--EEEEEEeCCCceEE
Confidence                               345788999999999888764433221111122111  1111111  12223344555666


Q ss_pred             EEecCCEEEEEEc
Q 013578          371 AATHGSTLQWLSV  383 (440)
Q Consensus       371 ~~~~~~~i~i~d~  383 (440)
                      +....|.+.-..+
T Consensus       302 liT~~G~~iR~~v  314 (370)
T 3l6v_A          302 LISDGGTLVRTRG  314 (370)
T ss_dssp             EEETTCCEEEEEG
T ss_pred             EEcCCCeEEEeeH
Confidence            6666665555544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=86.64  E-value=15  Score=31.67  Aligned_cols=167  Identities=10%  Similarity=0.023  Sum_probs=89.1

Q ss_pred             CcceeEEEEcc--CCC-EEEEe-eC--CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578           91 GDSVTGLCFSS--DGK-CLATA-CA--DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS  164 (440)
Q Consensus        91 ~~~V~~l~~s~--dg~-~l~t~-s~--dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~  164 (440)
                      .-....+.+.+  +|. +|+.+ ..  +.+|.+|+++................-.....+.+.++|...++...-.....
T Consensus       111 ~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~  190 (355)
T 3sre_A          111 SFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPY  190 (355)
T ss_dssp             GCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHH
T ss_pred             ceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcc
Confidence            34566777765  453 34444 22  57889998876543322222222222345678999999876665432110000


Q ss_pred             EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cce--
Q 013578          165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GKL--  241 (440)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~--  241 (440)
                      ...++.          ......+....++.  ............+..+.++||++.+.++-+..+.|..|++.. ++.  
T Consensus       191 ~~~~e~----------~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~  258 (355)
T 3sre_A          191 LKSWEM----------HLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP  258 (355)
T ss_dssp             HHHHHH----------HTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             cccchh----------hccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec
Confidence            000000          00000011112221  222334455566788889999997777777888999999863 332  


Q ss_pred             eeeeeCCCCcccEEEecC-CCCeEEEEecC
Q 013578          242 LGNVDTNQLKNNMAAISP-NGRFLAAAAFT  270 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d  270 (440)
                      .+.+.. ......+++.+ +|++.+++..+
T Consensus       259 ~~~~~~-~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          259 LRVLSF-DTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEEC-SSEEEEEEECTTTCCEEEEEESC
T ss_pred             CEEEeC-CCCCceEEEeCCCCcEEEEecCC
Confidence            123322 34556788998 58877766533

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=86.47  E-value=14  Score=31.12  Aligned_cols=215  Identities=10%  Similarity=0.054  Sum_probs=104.3

Q ss_pred             cCCCEEEEeeCCCcEEEEecCCCCCcce---eeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccc
Q 013578          101 SDGKCLATACADGVIRVHKLDDASSKSF---KFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTN  177 (440)
Q Consensus       101 ~dg~~l~t~s~dg~v~vW~~~~~~~~~~---~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  177 (440)
                      |+..++++.+.+|.|+--.+..-.....   -........+..+..+........++..+..+....+..++........
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a   80 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA   80 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence            4567888999999998766543211000   0000111223444455555566677777777555555555543332211


Q ss_pred             cccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-------ceeeeeeCCCC
Q 013578          178 EGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-------KLLGNVDTNQL  250 (440)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~  250 (440)
                      .+.....+         ........+.......   ...++. +++..+..|.++...+...       .....+..+ .
T Consensus        81 ~G~~i~~~---------l~l~~~e~i~~~~~~~---~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d  146 (307)
T 1zi0_A           81 RGRPIVNL---------LPLEQDERITAILPVT---EFEEGV-KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-D  146 (307)
T ss_dssp             CCEEGGGT---------SCCCTTCCEEEEEEES---CCCTTC-EEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-C
T ss_pred             CCeEhhhc---------cCCCCCCEEEEEEEec---cCCCCc-EEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-C
Confidence            11110000         0000111111111100   012333 6788899999998866421       111223333 3


Q ss_pred             cccEEEecCCCCeEEEEecCCCEEEEEeEecCC-CceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578          251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD-GLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       251 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                      .+..+........++..+.+|.+..++...-.. +..........+. ....|.++...+++..|++.+..|.++-.++.
T Consensus       147 ~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~  225 (307)
T 1zi0_A          147 ELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVA  225 (307)
T ss_dssp             CEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred             EEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence            444444444556788888899888877532110 0000011122333 23557777655556678888999999988875


Q ss_pred             c
Q 013578          330 V  330 (440)
Q Consensus       330 ~  330 (440)
                      .
T Consensus       226 e  226 (307)
T 1zi0_A          226 E  226 (307)
T ss_dssp             G
T ss_pred             H
Confidence            3

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=86.31  E-value=14  Score=31.13  Aligned_cols=217  Identities=10%  Similarity=0.089  Sum_probs=108.9

Q ss_pred             ccCCCEEEEeeCCCcEEEEecCCCCCcc---eeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccc
Q 013578          100 SSDGKCLATACADGVIRVHKLDDASSKS---FKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIST  176 (440)
Q Consensus       100 s~dg~~l~t~s~dg~v~vW~~~~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  176 (440)
                      -++..++++.+.+|.|+--.+..-....   .-........+..+..+........++..+..+....+..++.......
T Consensus         5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            3567789999999999987765432110   0011112233345556666666677777777755555555443322111


Q ss_pred             ccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-------CceeeeeeCCC
Q 013578          177 NEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-------GKLLGNVDTNQ  249 (440)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-------~~~~~~~~~~~  249 (440)
                      ..+.....         .........+.......   ...++. .++..+..|.++...+..       |.....+.. .
T Consensus        85 ~~G~~i~~---------~l~l~~~e~i~~~~~~~---~~~~~~-~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~  150 (312)
T 1suu_A           85 SKGQNISE---------LINLGDQEEILTIKNSK---DLTDDA-YLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-K  150 (312)
T ss_dssp             ---CBGGG---------TSCCCTTCCEEEEEEES---CCCTTC-EEEEEETTSEEEEEEGGGGCC----CEECBCCCT-T
T ss_pred             CCCcChhh---------ccCCCCCCEEEEEEEec---cCCCCC-EEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-C
Confidence            11110000         00000111111111100   011233 677778899888877642       222223333 3


Q ss_pred             CcccEEEecCCCCeEEEEecCCCEEEEEeEecC-CCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578          250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK-DGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI  328 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~  328 (440)
                      ..+..+.....+..++..+.+|.+..+....-. .+..........+.. ...|.++..-.++..|++.+..|..+..++
T Consensus       151 d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~  229 (312)
T 1suu_A          151 DFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNM  229 (312)
T ss_dssp             CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred             CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence            344444444455678888999998888864311 111011112233332 355666665555667888899999999988


Q ss_pred             Ccc
Q 013578          329 NVR  331 (440)
Q Consensus       329 ~~~  331 (440)
                      ...
T Consensus       230 ~e~  232 (312)
T 1suu_A          230 SKI  232 (312)
T ss_dssp             GGS
T ss_pred             HHh
Confidence            743

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.70  E-value=20  Score=32.27  Aligned_cols=57  Identities=19%  Similarity=0.225  Sum_probs=34.8

Q ss_pred             cceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCcceeeEEec--C------CCCCCCceEEEccC
Q 013578           92 DSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKSFKFLRIN--L------PPGGPPTAVAFADN  149 (440)
Q Consensus        92 ~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~--~------~~~~~v~~v~~~~~  149 (440)
                      ..-+.|+|.|||. .|+.+...|.|++++.+.... ...+....  .      ........|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            4568999999996 555567889999997543211 11111111  1      11356778999986

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=85.10  E-value=15  Score=30.38  Aligned_cols=28  Identities=14%  Similarity=-0.073  Sum_probs=16.4

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEecCCC
Q 013578           93 SVTGLCFSSDGKCLATACADGVIRVHKLDDA  123 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~  123 (440)
                      .|..++.-.... ++. . ||.|..|-....
T Consensus        25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~   52 (282)
T 3qhy_B           25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLN   52 (282)
T ss_dssp             SCCEEEECSSEE-EEE-E-TTEEEEEECCSS
T ss_pred             CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCC
Confidence            466666643322 222 4 888888876543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=84.00  E-value=1.9  Score=36.88  Aligned_cols=108  Identities=11%  Similarity=0.034  Sum_probs=57.0

Q ss_pred             CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE--ecCCEEEEEEcCCccch
Q 013578          312 EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA--THGSTLQWLSVETGKVL  389 (440)
Q Consensus       312 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~~~i~i~d~~~~~~~  389 (440)
                      ..++.++.||.|.-.|.++++........  ... +.......       +...++..++.  ..||.|+.++..+|...
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~-p~~~~~~~-------~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~   80 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQ-PLIEIQEP-------SRLETYETLIIEPFGDGNIYYFNAHQGLQK   80 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG--GSC-CSEECCCS-------CTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccC-CcEEecCC-------ccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence            36778888888888888877654332211  000 00000000       00123344444  35888888888887543


Q ss_pred             hhhhcc---ccCCeEE---EEe------cCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          390 DTAEKA---HEGEITC---MAW------APKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       390 ~~~~~~---h~~~v~~---v~~------~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ..+...   ...++..   ...      +.+         ..+++|+.+|++...|+.+|+
T Consensus        81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~---------g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVED---------EKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             EEEEHHHHHTTCSEEEECC----------CC---------EEEEECEEEEEEEEEETTTCC
T ss_pred             eeeccccceeccccccCCCceeecccccccC---------CEEEEEecCCEEEEEECCCCc
Confidence            322111   1112221   000      122         578899999999988888775

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=83.98  E-value=19  Score=30.59  Aligned_cols=198  Identities=5%  Similarity=-0.035  Sum_probs=104.1

Q ss_pred             EEEEeeCCceEEEEeCCCCc-------eeeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCC----ceee
Q 013578          221 IIASCSEGTDISIWHGKTGK-------LLGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDG----LVKA  288 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~-------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~  288 (440)
                      .+++.+.+|.|+--.+.+.+       -+..+.. ....+..+........|+.-+..|+++-.....-...    .-..
T Consensus         5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~   84 (327)
T 3uc1_A            5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQH   84 (327)
T ss_dssp             EEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEE
T ss_pred             EEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEE
Confidence            67888899999876543211       1111111 1233444444556667777778887765543211110    0000


Q ss_pred             eeeeeeeeccccceEEEEEcC---CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578          289 VTSVMQLKGHKSAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS  365 (440)
Q Consensus       289 ~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  365 (440)
                      ......+.. ...|.++..-+   +..+++..+.+|.|+.-.+........  .....+     .......-+.....+.
T Consensus        85 i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r--~G~~~i-----~lke~D~lv~~~~~~~  156 (327)
T 3uc1_A           85 VANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS--GGIVAV-----NLRDNDELVGAVLCSA  156 (327)
T ss_dssp             HHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS--SCEESC-----BCCTTCCEEEEEEECT
T ss_pred             HHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc--CceEEE-----EECCCCEEEEEEEecC
Confidence            001122222 34455543333   577899999999999988765332111  011111     1111222233344455


Q ss_pred             CCCEEEEecCCEEEEEEcC--Cccc---------hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          366 DGKILAATHGSTLQWLSVE--TGKV---------LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       366 ~g~~l~~~~~~~i~i~d~~--~~~~---------~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      +..+++.++.|.+..+...  .-..         .-.+  .....|.++...+++        ..|+..+..|.++.-.+
T Consensus       157 ~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L--~~~d~Vv~~~~~~~~--------~~ll~~T~~G~~Krt~l  226 (327)
T 3uc1_A          157 GDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF--NIDDRLLSLNVVREG--------TYLLVATSGGYAKRTAI  226 (327)
T ss_dssp             TCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC--CTTCCEEEEEECCTT--------CEEEEEETTSEEEEEEG
T ss_pred             CCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC--CCCCEEEEEEEECCC--------CEEEEEeCCCcEEEEEH
Confidence            5566777788888888776  2211         1112  134557776665544        58888899999988765


Q ss_pred             CC
Q 013578          435 PS  436 (440)
Q Consensus       435 ~~  436 (440)
                      ..
T Consensus       227 ~e  228 (327)
T 3uc1_A          227 EE  228 (327)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=83.91  E-value=19  Score=30.57  Aligned_cols=299  Identities=11%  Similarity=0.042  Sum_probs=134.7

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCcc---eeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccc
Q 013578          103 GKCLATACADGVIRVHKLDDASSKS---FKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEG  179 (440)
Q Consensus       103 g~~l~t~s~dg~v~vW~~~~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (440)
                      ...+++.+.+|.|+--.+.+-....   .-........+..+..+........++..+..+....+..++.........+
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G   82 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG   82 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence            3467788888888765432110000   0000111122234555555556666776766655555555554433211111


Q ss_pred             cccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc-------eeeeeeCCCCcc
Q 013578          180 KQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-------LLGNVDTNQLKN  252 (440)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-------~~~~~~~~~~~v  252 (440)
                      .....         .........+.......   ..++.. +++..+.+|.++...+....       ....+.. ...+
T Consensus        83 ~~i~~---------~l~l~~~e~i~~~~~~~---~~~~e~-~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~l  148 (327)
T 3uc1_A           83 QHVAN---------LLAFQPEERIAQVIQIR---GYTDAP-YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDEL  148 (327)
T ss_dssp             EEHHH---------HTTCCTTCCEEEEEEES---STTSSS-EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCE
T ss_pred             EEHHH---------ccCCCCCCEEEEEEEec---cCCCCC-EEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEE
Confidence            11000         00000111111111100   012334 88899999999988765422       1122333 3334


Q ss_pred             cEEEecCCCCeEEEEecCCCEEEEEeE--ecCC-CceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578          253 NMAAISPNGRFLAAAAFTADVKVWEIV--YSKD-GLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN  329 (440)
Q Consensus       253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~  329 (440)
                      ..+........|+..+..|.+..+...  .-.. +..........+. ....|.++...+++.+|+..+..|.++.-.+.
T Consensus       149 v~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~  227 (327)
T 3uc1_A          149 VGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIE  227 (327)
T ss_dssp             EEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred             EEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence            444444556678888899998888765  2110 1100111122333 24567777666667789999999999988876


Q ss_pred             ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhh-------hhccccCCeEE
Q 013578          330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDT-------AEKAHEGEITC  402 (440)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~-------~~~~h~~~v~~  402 (440)
                      ..............+  ......++  -+.......+..+++.+.+|.+..++...-.....       +.-...+.|.+
T Consensus       228 e~~~~~R~~~G~~~~--~l~~~~d~--lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~  303 (327)
T 3uc1_A          228 EYPVQGRGGKGVLTV--MYDRRRGR--LVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA  303 (327)
T ss_dssp             GSCBCCTTSCCEESS--CCCTTTCS--EEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEE
T ss_pred             HccccCcCCCcEEEE--EecCCCCe--EEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEE
Confidence            433221111111111  11111122  22223334555566667777666666543222211       11113456777


Q ss_pred             EEecCCCCCCCCCcceEEEEeeCCC
Q 013578          403 MAWAPKTIPMGNQQVSVLATSSVDK  427 (440)
Q Consensus       403 v~~~~~~~~~~~~~~~~l~t~~~Dg  427 (440)
                      +...+..     .  ..+.+.+.+|
T Consensus       304 ~~~~~~~-----~--~~~~~~~~~g  321 (327)
T 3uc1_A          304 IARNAEE-----S--GDDNAVDANG  321 (327)
T ss_dssp             EEECC--------------------
T ss_pred             EEEcCCC-----c--ceEEEEecCC
Confidence            6665442     1  3455555554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.90  E-value=18  Score=36.09  Aligned_cols=33  Identities=24%  Similarity=0.254  Sum_probs=27.4

Q ss_pred             CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      .+.+++..++.        .+++|-+.|+++|+|++.++++
T Consensus       237 ~~~~~~~~~~~--------~~lftl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          237 TIISMIFLSTY--------NVLVMLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             CEEEEEEETTT--------TEEEEEETTCEEEEEETTTTEE
T ss_pred             eEEEEeecCCC--------cEEEEEECCCEEEEEECCCCCe
Confidence            46677777766        7999999999999999998754

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=83.88  E-value=19  Score=30.52  Aligned_cols=265  Identities=10%  Similarity=0.022  Sum_probs=127.5

Q ss_pred             cCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccccccc
Q 013578          101 SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK  180 (440)
Q Consensus       101 ~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (440)
                      |+..++++.+.+|.|+--.+..-....  ........+..+..+........++..+..+....+..++.........+.
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~--~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~   80 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASN--GQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ   80 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTT--TCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcC--ccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence            567788999999999876554211000  001112233455556666667777777777655555555543332221111


Q ss_pred             ccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC--------CceeeeeeCCCCcc
Q 013578          181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT--------GKLLGNVDTNQLKN  252 (440)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~--------~~~~~~~~~~~~~v  252 (440)
                      .....         ........+.......   ...++. +++..+..|.++...+..        +.....+... ..+
T Consensus        81 ~i~~~---------i~L~~~e~Iv~~~~~~---~~~~~~-~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~l  146 (323)
T 1wp5_A           81 HIANI---------IPIDRDEEIIKAIPIN---DFELNG-YFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQV  146 (323)
T ss_dssp             EGGGT---------SCCCTTCCEEEEEEES---CTTSSC-EEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCE
T ss_pred             Chhhc---------cCCCCCCEEEEEEEec---ccCCCc-eEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEE
Confidence            10000         0000111111111100   011233 678889999999887642        1111223322 344


Q ss_pred             cEEEecCCCCeEEEEecCCCEEEEEeEecC-CCceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCc
Q 013578          253 NMAAISPNGRFLAAAAFTADVKVWEIVYSK-DGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINV  330 (440)
Q Consensus       253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~  330 (440)
                      ..+........++..+.+|.+..+....-. .+..........+. ....|.++..-+++. .|++.+..|..+..++..
T Consensus       147 v~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e  225 (323)
T 1wp5_A          147 VDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE  225 (323)
T ss_dssp             EEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence            444444456678888899998888763211 01101111222333 234566665544445 788888899988887764


Q ss_pred             cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCC
Q 013578          331 RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVET  385 (440)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~  385 (440)
                      .............+  ......++. -+....+.++..+++.+..|.+..+.+..
T Consensus       226 ~~~~~Rg~kGv~~~--~~~~~~~~~-l~~~~~v~~~~~i~~it~~g~~ir~~~~~  277 (323)
T 1wp5_A          226 FEKATRAKRGVVIL--RELKANPHR-ISGFVVAQDSDTIYLQTEKSFIETIKVGD  277 (323)
T ss_dssp             SCCCCTTSCCEECS--CCCSSSCCC-EEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred             ccccCCCCCCEECe--eecCCCCce-EEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence            22111111111111  011111111 12233445555566667777665555543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=83.50  E-value=19  Score=30.22  Aligned_cols=182  Identities=11%  Similarity=0.103  Sum_probs=84.7

Q ss_pred             EEEEeeCCceEEEEeCCCCceee-eeeCCCCcccEEEecCCCCeEEEEec----CCC-------EEEEEeEecCCCceee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLG-NVDTNQLKNNMAAISPNGRFLAAAAF----TAD-------VKVWEIVYSKDGLVKA  288 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~-------i~i~d~~~~~~~~~~~  288 (440)
                      +++.|+.  .+..||..+++-.. .+..........+...++.+++.|+.    ++.       +..||....      .
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~------~   89 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS------E   89 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT------E
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC------c
Confidence            4555553  38899998876543 11111122223334557788888873    121       555554322      1


Q ss_pred             eeeeeeeeccccceEEEEEcCCCCEEEEEeCC-------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE
Q 013578          289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKD-------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL  361 (440)
Q Consensus       289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  361 (440)
                      +..+..+......-..+.+  ++..++.|+.+       ..+.+||..+..-...     ...+.+   ..+|     ++
T Consensus        90 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-----~~~p~~---r~~~-----~~  154 (318)
T 2woz_A           90 WVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-----KNLPIK---VYGH-----NV  154 (318)
T ss_dssp             EEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-----CCCSSC---EESC-----EE
T ss_pred             EEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-----CCCCCc---cccc-----EE
Confidence            2222222211111222223  56677777754       2477788875432210     001100   1111     12


Q ss_pred             EeCCCCCEEEEec-------CCEEEEEEcCCcc--chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-----C
Q 013578          362 SLSSDGKILAATH-------GSTLQWLSVETGK--VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-----K  427 (440)
Q Consensus       362 ~~s~~g~~l~~~~-------~~~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-----g  427 (440)
                      +. .++++++.|.       -..+.+||..+.+  .+..+.... .....+.+  ++        .+++.||.+     .
T Consensus       155 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~--~~--------~iyv~GG~~~~~~~~  222 (318)
T 2woz_A          155 IS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR-SMFGVAIH--KG--------KIVIAGGVTEDGLSA  222 (318)
T ss_dssp             EE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEE--TT--------EEEEEEEEETTEEEE
T ss_pred             EE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc-ccceEEEE--CC--------EEEEEcCcCCCCccc
Confidence            22 4666666543       1468999988764  222221111 11122222  33        677777754     3


Q ss_pred             eEEEEeCCCC
Q 013578          428 KVKLWLAPSL  437 (440)
Q Consensus       428 ~i~vw~~~~~  437 (440)
                      .+.+||+.+.
T Consensus       223 ~~~~yd~~~~  232 (318)
T 2woz_A          223 SVEAFDLKTN  232 (318)
T ss_dssp             EEEEEETTTC
T ss_pred             eEEEEECCCC
Confidence            4667887654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=83.22  E-value=1.6  Score=39.80  Aligned_cols=77  Identities=16%  Similarity=0.153  Sum_probs=55.6

Q ss_pred             EEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC------ce-------eeeeeCCCCcccEEEecCCCCeEEEEec
Q 013578          203 ILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG------KL-------LGNVDTNQLKNNMAAISPNGRFLAAAAF  269 (440)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~------~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~  269 (440)
                      +.....+..+-.+|||+++++++-.+.++.++|.+..      +.       ....+. .......+|.++|+-..+..-
T Consensus       319 iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfi  397 (638)
T 3sbq_A          319 VPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFI  397 (638)
T ss_dssp             EEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETT
T ss_pred             EeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeee
Confidence            3444456777789999988888889999999998732      11       223333 233456899999966666678


Q ss_pred             CCCEEEEEeEe
Q 013578          270 TADVKVWEIVY  280 (440)
Q Consensus       270 dg~i~i~d~~~  280 (440)
                      |.+|.-|++..
T Consensus       398 dSqvvkWni~~  408 (638)
T 3sbq_A          398 DSQVVKWNMEE  408 (638)
T ss_dssp             TTEEEEEEHHH
T ss_pred             cceEEEEeccH
Confidence            99999999864

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.96  E-value=5.7  Score=39.62  Aligned_cols=34  Identities=18%  Similarity=0.241  Sum_probs=29.5

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCC
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASS  125 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~  125 (440)
                      ..|.+++..++..+++|-+.|+++|+|++.++..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence            3577888888889999999999999999998754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=80.91  E-value=24  Score=29.56  Aligned_cols=171  Identities=11%  Similarity=0.030  Sum_probs=84.3

Q ss_pred             CCCCCeEEEEe---eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeee
Q 013578          215 TADGSTIIASC---SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       215 ~~~~~~~l~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~  290 (440)
                      +++++.+..+-   .....|...++... ....+..+..    ..++++++.|+-.+. ..+|...++....    .  +
T Consensus       112 s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~----~--~  180 (302)
T 3s25_A          112 SLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS----E--A  180 (302)
T ss_dssp             EEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE----E--E
T ss_pred             EEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC----E--E
Confidence            55666455544   34556777777633 3334433322    456788888887765 4555555543221    1  1


Q ss_pred             eeeeeeccccceEEEEEcCCCCEEEEEeCCC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578          291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK  368 (440)
Q Consensus       291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  368 (440)
                      .+  +.   +... ..++|++.+|+-...++  .|..-++.....        ..+     ...  .  +  ..|+|++.
T Consensus       181 ~l--~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--------~~L-----t~~--~--~--~~~~~~g~  235 (302)
T 3s25_A          181 LF--YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--------VVL-----TEA--N--I--EHYNVYGS  235 (302)
T ss_dssp             EE--EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--------EEC-----SCS--C--E--EEEEEETT
T ss_pred             EE--eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--------EEE-----eCC--C--c--ceEEECCC
Confidence            11  22   2222 23568888887665433  454445543211        111     000  0  1  34788888


Q ss_pred             EEEEec---CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          369 ILAATH---GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       369 ~l~~~~---~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      .|.-+.   .+.|..-++.... ...+..+   .+..+....+         .+..+--..+.|..-++
T Consensus       236 ~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~~---~~~~i~i~~d---------~Iy~td~~~~~i~~~~~  291 (302)
T 3s25_A          236 LIFYQRGGDNPALCVVKNDGTG-FKELAKG---EFCNINVTSQ---------YVYFTDFVSNKEYCTST  291 (302)
T ss_dssp             EEEEEECSSSCEEEEEETTSCC-CEEEEES---CEEEEEECSS---------EEEEEETTTCCEEEEES
T ss_pred             EEEEEECCCCcEEEEEECCCCc-cEEeeCC---ccceEEEeCC---------EEEEEECCCCeEEEEEC
Confidence            777542   3566666664433 2333211   3445555444         34444444455444443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=80.58  E-value=28  Score=30.24  Aligned_cols=130  Identities=15%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             ccceEEEEEc---CC----CCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCe----eeeeeEEeCCC
Q 013578          299 KSAVTWLCFA---PN----SEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT----LQYDRLSLSSD  366 (440)
Q Consensus       299 ~~~v~~~~~~---p~----~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~  366 (440)
                      .+.+..+.+.   |+    +.+++.. +..+.|.++|+.+++.-+........-........+..    ..+..++++|+
T Consensus       151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~  230 (381)
T 3q6k_A          151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR  230 (381)
T ss_dssp             GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred             CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence            3457777776   22    3344333 35678999999876543211100000000001111211    35778999998


Q ss_pred             ----CCEEEEecCCEEEEEEcCC-----ccchhhhh-ccccC---CeEEEEec-CCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578          367 ----GKILAATHGSTLQWLSVET-----GKVLDTAE-KAHEG---EITCMAWA-PKTIPMGNQQVSVLATSSVDKKVKLW  432 (440)
Q Consensus       367 ----g~~l~~~~~~~i~i~d~~~-----~~~~~~~~-~~h~~---~v~~v~~~-~~~~~~~~~~~~~l~t~~~Dg~i~vw  432 (440)
                          ++.|....-..-++|.+.+     ......++ .+..+   .-..++.. .+|        .++++--+...|..|
T Consensus       231 ~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G--------~ly~~~~~~~aI~~w  302 (381)
T 3q6k_A          231 DSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK--------VIFFAEANTKQVSCW  302 (381)
T ss_dssp             CTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC--------EEEEEESSSSEEEEE
T ss_pred             cCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC--------eEEEEeccCCeEEEE
Confidence                7777765432333333322     11111110 12222   23345564 455        677777788999999


Q ss_pred             eCCC
Q 013578          433 LAPS  436 (440)
Q Consensus       433 ~~~~  436 (440)
                      +...
T Consensus       303 ~~~~  306 (381)
T 3q6k_A          303 NTQK  306 (381)
T ss_dssp             ETTS
T ss_pred             eCCC
Confidence            9865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	440
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-20
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.4 bits (233), Expect = 5e-22
 Identities = 57/402 (14%), Positives = 117/402 (29%), Gaps = 65/402 (16%)

Query: 32  SEIKSIAKTELEPDHQKKPTKPSQPISKKSHSKPHSHSHGDKDQNKRHHPLDVNTLKGHG 91
           SE+  + +   E +  K   + ++   K       S    + D   R       TL+GH 
Sbjct: 2   SELDQLRQ---EAEQLKNQIRDAR---KACADATLSQITNNIDPVGRIQMRTRRTLRGHL 55

Query: 92  DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNAT 151
             +  + + +D + L +A  DG + +         +   +             A+A +  
Sbjct: 56  AKIYAMHWGTDSRLLVSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCAYAPSGN 110

Query: 152 SIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASA 211
            +     +       +   E  +  +             ++                   
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT----------- 159

Query: 212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA 271
                         S  T  ++W  +TG+       +       +++P+ R   + A  A
Sbjct: 160 -------------SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206

Query: 272 DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR 331
             K+W++        +         GH+S +  +CF PN     T S D T R++++   
Sbjct: 207 SAKLWDV--------REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258

Query: 332 YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQWLSVETGKVLD 390
             L        +  I              +S S  G++L                     
Sbjct: 259 QELMTYSHDNIICGI------------TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306

Query: 391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
                H+  ++C+                +AT S D  +K+W
Sbjct: 307 VL-AGHDNRVSCLGVTDDG--------MAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 217 DGSTIIASCSEGT-DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKV 275
           +G+       + T  +         +  + D         + S +GR L A     +  V
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
           W+                 L GH + V+ L    +   + T S D  L++WN
Sbjct: 297 WD--------ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 30/152 (19%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
             T  GH   +  +CF  +G   AT   D   R+  L             +       T+
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA---DQELMTYSHDNIICGITS 275

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           V+F+ +   ++    +    +  ++         +  +   L G          HD R  
Sbjct: 276 VSFSKSGRLLLAGYDD---FNCNVW------DALKADRAGVLAG----------HDNRVS 316

Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWH 235
                      T DG   +A+ S  + + IW+
Sbjct: 317 CLGV-------TDDGM-AVATGSWDSFLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.7 bits (218), Expect = 7e-20
 Identities = 56/357 (15%), Positives = 128/357 (35%), Gaps = 22/357 (6%)

Query: 77  KRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP 136
            R   ++++    H   V  + FS+DG+ LAT C +   +V+++ D S      L   L 
Sbjct: 48  PREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS------LVARLS 100

Query: 137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
                       N +S   +   +        G+  A    +   +             +
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 160

Query: 197 VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAA 256
            H++           +         + S S    + IW  +TG+    +        +A 
Sbjct: 161 GHEQDIY--------SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV 212

Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
              +G+++AA +    V+VW+   +   + +  +      GHK +V  + F  + + +++
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHG 375
            S D ++++WN+  +   ++            +   G       ++ + + + +   +  
Sbjct: 272 GSLDRSVKLWNL--QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329

Query: 376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
             + +   ++G  L    + H   +  +A A  +         V AT S D K ++W
Sbjct: 330 RGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSLGPEYN--VFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 43/303 (14%)

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL 120
           S     +    D   NK    L+ ++       +  +CFS DGK LAT   D +IR+  +
Sbjct: 91  SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 150

Query: 121 DDASSKSFKFLRINLPP-------------GGPPTAVAFADNATSIVVATHNLSGCSLYM 167
           ++                            G     V   D  T     T ++      +
Sbjct: 151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV 210

Query: 168 Y---------------GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASAT 212
                              +   +  G    +L         HK      + T  G S  
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 213 YGTADGSTIIASCSEGTDISIWHGK-TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA 271
            G+ D S  + +     + S      +G        ++      A + N  ++ + +   
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330

Query: 272 DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC------FAPNSEQIITASKDGTLRV 325
            V  W+         K+   ++ L+GH+++V  +         P      T S D   R+
Sbjct: 331 GVLFWD--------KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

Query: 326 WNI 328
           W  
Sbjct: 383 WKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 5/119 (4%)

Query: 266 AAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325
             A       + I+Y+     +    + +   H S V  + F+ + E + T   + T +V
Sbjct: 29  PDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQV 87

Query: 326 WNIN----VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW 380
           + ++    V    D+         +    S  + L    +  S DGK LA      L  
Sbjct: 88  YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 146

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.1 bits (214), Expect = 1e-19
 Identities = 59/354 (16%), Positives = 106/354 (29%), Gaps = 56/354 (15%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
            L GH   VT + F      + +A  D  I+V   +    +               T   
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--------------TLKG 57

Query: 146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILT 205
             D+   I          S       K       +    + G +       +        
Sbjct: 58  HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN----- 112

Query: 206 LFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLA 265
                           I S S    I +W  +TG  +     ++    M   + +G  +A
Sbjct: 113 -------------GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIA 159

Query: 266 AAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325
           + +    V+VW +               +L+ H+  V  + +AP S     +   G+   
Sbjct: 160 SCSNDQTVRVWVV--------ATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 211

Query: 326 WNINVRYHLD--EDPKTLKVLPI----PLLDSNGATLQYDRLSLSSDGKILA-ATHGSTL 378
            +      L      KT+K+  +     L+   G       +   S GK +       TL
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 271

Query: 379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           +    +  + + T   AHE  +T + +              + T SVD+ VK+W
Sbjct: 272 RVWDYKNKRCMKTL-NAHEHFVTSLDFHKTA--------PYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.9 bits (185), Expect = 7e-16
 Identities = 41/265 (15%), Positives = 89/265 (33%), Gaps = 20/265 (7%)

Query: 62  HSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLD 121
                  +              + T+ GH  +V+ +    +G  + +A  D  I++ ++ 
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 122 DASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQ 181
                +   ++           V    + T I   +++ +     +       +T E K 
Sbjct: 132 -----TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV-------ATKECKA 179

Query: 182 QSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241
           + +     ++          + ++    S T  +      + S S    I +W   TG  
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239

Query: 242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA 301
           L  +  +            G+F+ + A    ++VW+         K    +  L  H+  
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY--------KNKRCMKTLNAHEHF 291

Query: 302 VTWLCFAPNSEQIITASKDGTLRVW 326
           VT L F   +  ++T S D T++VW
Sbjct: 292 VTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 12/194 (6%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
           V T  GH + V  +  + DG  +A+   D  +RV  +      + +              
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-----TKECKAELREHRHVVEC 190

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
           +++A  ++   ++    S            +S +  K                V     +
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
             +   S       G   I SC++   + +W  K  + +  ++ ++             +
Sbjct: 251 RGVLFHS-------GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 303

Query: 264 LAAAAFTADVKVWE 277
           +   +    VKVWE
Sbjct: 304 VVTGSVDQTVKVWE 317

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 1e-15
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 49/363 (13%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
              LKGH D V   C    G  + +   D  ++V         + K LR  +   G   +
Sbjct: 9   PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSA-----VTGKCLRTLVGHTGGVWS 62

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEG----------KQQSKLPGPEIKWE 193
               DN          L   +         +  +            +  S      ++  
Sbjct: 63  SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122

Query: 194 HHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNN 253
             +      +L    A+      DG  +++   +   + +W  +T   L  +  +  +  
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM-VKVWDPETETCLHTLQGHTNRVY 181

Query: 254 MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ 313
              +  +G  + + +    ++VW++             +  L GH+S  +          
Sbjct: 182 S--LQFDGIHVVSGSLDTSIRVWDVETGN--------CIHTLTGHQSLTS--GMELKDNI 229

Query: 314 IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT 373
           +++ + D T+++W+I     L                 N        L  + +  I ++ 
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGP-----------NKHQSAVTCLQFNKNFVITSSD 278

Query: 374 HGSTLQWLSVETGKVLDT----AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKV 429
            G+   W  ++TG+ +            G +  +  +                 + + K+
Sbjct: 279 DGTVKLW-DLKTGEFIRNLVTLESGGSGGVVWRIRASNT----KLVCAVGSRNGTEETKL 333

Query: 430 KLW 432
            + 
Sbjct: 334 LVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
           + S   LKGH   V   C      +I++ S D TL+VW+  
Sbjct: 6   LKSPKVLKGHDDHV-ITCLQFCGNRIVSGSDDNTLKVWSAV 45

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 2/52 (3%)

Query: 72  DKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADG--VIRVHKLD 121
           D    +    L      G G  V  +  S+     A    +G    ++  LD
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 2e-14
 Identities = 42/355 (11%), Positives = 90/355 (25%), Gaps = 55/355 (15%)

Query: 83  DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142
            V   +   D ++ +        L     DG + V+K D  +      L  +L    P  
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLL 60

Query: 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRA 202
              F DN    +                  +       + +       K+   K+     
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 203 ILTLFG-----------------------ASATYGTADGSTIIASCSEGTDISIWHGKTG 239
              +                          +  +     S+ +      + +  +     
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180

Query: 240 KLLG----NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW-------EIVYSKDGLVKA 288
           +                ++A +       A ++    V V        +   SK    + 
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240

Query: 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL 348
               ++       V  + F+P  + + TA  DG +  WN+  R       K +K      
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-------KKIKNFAKFN 293

Query: 349 LDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCM 403
            DS         + ++    IL           + +T   +D   + +   I  +
Sbjct: 294 EDS--------VVKIACSDNILCLATSDD----TFKTNAAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 293 MQL----KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
           MQ+    +  K  ++ +   P+   ++  S DG+L V+  +
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD 41

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 8/40 (20%)

Query: 393 EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           E+A +  I+ +   P          S+L  +S D  + ++
Sbjct: 7   EQAPKDYISDIKIIPSK--------SLLLITSWDGSLTVY 38

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.8 bits (166), Expect = 2e-13
 Identities = 44/365 (12%), Positives = 102/365 (27%), Gaps = 37/365 (10%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
           TL+GH  SV   C   +   + T   D +IRV+        + KFL       G   A+ 
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSI-----NKKFLLQLSGHDGGVWALK 60

Query: 146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILT 205
           +A     +       S        + K        +        +    +K        +
Sbjct: 61  YAHGGILVSG-----STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 115

Query: 206 LFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLA 265
                  +     S++     E     ++H                 ++  +S +G  + 
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 175

Query: 266 AAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325
           + ++   + VW++   K   + +  +              C + + +  I         +
Sbjct: 176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 235

Query: 326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR-----------------LSLSSDGK 368
                 +        L    +    ++G+   +D                   +      
Sbjct: 236 MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN 295

Query: 369 ILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK 428
           IL +   +     ++ +GK++         +I  + +  KT+         +A    D +
Sbjct: 296 ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL---------VAAVEKDGQ 346

Query: 429 VKLWL 433
             L +
Sbjct: 347 SFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 22/145 (15%)

Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354
           L+GH ++V   C       +IT + D  +RV++         + K L  L       +G 
Sbjct: 8   LRGHMTSV-ITCLQFEDNYVITGADDKMIRVYDS-------INKKFLLQL-------SGH 52

Query: 355 TLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGN 414
                 L  +  G +++ +   T++   ++                   +       +  
Sbjct: 53  DGGVWALKYAHGGILVSGSTDRTVRVWDIKK-------GCCTHVFEGHNSTVRCLDIVEY 105

Query: 415 QQVSVLATSSVDKKVKLWLAPSLES 439
           + +  + T S D  + +W  P   S
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESS 130

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS 311
           + +     +   L + +      ++ +   K  LV A      +      +  + F   +
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGK--LVHAN-----ILKDADQIWSVNFKGKT 336

Query: 312 EQIITASKDGTLRVWNIN 329
             +    KDG   +  ++
Sbjct: 337 -LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 1/36 (2%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLD 121
            +    D +  + F      +A    DG   +  LD
Sbjct: 319 NILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILD 353

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 4e-13
 Identities = 35/258 (13%), Positives = 68/258 (26%), Gaps = 9/258 (3%)

Query: 79  HHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG 138
            H   +NTL  HG+ V  +  S+  + + T    G ++V  +    +KS       L   
Sbjct: 40  RHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD 97

Query: 139 GPPTAVAFADNATSIVVAT-------HNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIK 191
               +     +  +++V          +L+  +  +  E  + +                
Sbjct: 98  NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157

Query: 192 WEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK 251
                 +     L        +            S         G    +         +
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217

Query: 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS 311
                 +     L        + V     + + L        QL  H+S V  L FA   
Sbjct: 218 LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277

Query: 312 EQIITASKDGTLRVWNIN 329
           +  ++  KD  L  W   
Sbjct: 278 KWFVSTGKDNLLNAWRTP 295

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 1e-12
 Identities = 25/268 (9%), Positives = 64/268 (23%), Gaps = 21/268 (7%)

Query: 72  DKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL 131
           D        P+         + +       DG  L        + +  L   + +    L
Sbjct: 78  DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

Query: 132 RINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIK 191
             +  P     A++          +  N++   L+     +    +           +  
Sbjct: 138 TSS-APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196

Query: 192 WEHHKVHDKRAILTLFGASA---TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN 248
                  D                +        +  C  G  +++    +   + +V+  
Sbjct: 197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256

Query: 249 QLKNNM--------AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300
                            +  G++  +      +  W   Y            +      S
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---------SIFQSKESS 307

Query: 301 AVTWLCFAPNSEQIITASKDGTLRVWNI 328
           +V     + + + I+T S D    V+ +
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
                S  +   ++ W    G  +     +    +   IS + +++   +      V+E+
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD-ISVDDKYIVTGSGDKKATVYEV 335

Query: 279 VY 280
           +Y
Sbjct: 336 IY 337

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE 312
               IS   R +        VKVW+I        K+  S +      + +      P+  
Sbjct: 55  CAVTISNPTRHVYTGG-KGCVKVWDI---SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC 110

Query: 313 QIITASKDGTLRVWNINVRYH 333
            +I   +  TL +W++     
Sbjct: 111 TLIVGGEASTLSIWDLAAPTP 131

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 14/108 (12%)

Query: 268 AFTADVKVWEIVYSKDGLVKA--VTSVMQLK--GHKSAVTWLCFAPNSEQIITASKDGTL 323
             TAD ++  + +  D L+         Q+    H   V  +  +  +  + T    G +
Sbjct: 16  HVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCV 74

Query: 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371
           +VW+I+   +           P+  LD            L  DG  L 
Sbjct: 75  KVWDISHPGNKS---------PVSQLDCLNRDNYIRSCKLLPDGCTLI 113

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.6 bits (163), Expect = 6e-13
 Identities = 51/357 (14%), Positives = 101/357 (28%), Gaps = 36/357 (10%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
           V+ LK H   VTG+ ++ D   + T   D    V  L   + K    +            
Sbjct: 44  VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 103

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
               +   ++   +  +S C      +       +   +S +   +       +      
Sbjct: 104 APN-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162

Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
                 SA     +                   ++    G V       +    S NG  
Sbjct: 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV-------HGVCFSANGSR 215

Query: 264 LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323
           +A  +  + V + +              V  L      +  + F   S  ++ A  D   
Sbjct: 216 VAWVSHDSTVCLADADKKMA--------VATLASETLPLLAVTFITES-SLVAAGHDCFP 266

Query: 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSV 383
            ++          D    K+     LD    + Q     L++  +             S 
Sbjct: 267 VLFTY--------DSAAGKLSFGGRLDVPKQSSQR---GLTARERF-QNLDKKASSEGSA 314

Query: 384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLESS 440
             G  LD+    H+  ++ ++        G  + S   T+ +D  + +W   SLES+
Sbjct: 315 AAGAGLDSL---HKNSVSQISVLSG----GKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.8 bits (148), Expect = 5e-11
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
           A + +   +A      +V ++E   +K         V +LK H   VT + +AP+S +I+
Sbjct: 14  AWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIV 67

Query: 316 TASKDGTLRVWNINVRYH 333
           T   D    VW +  R  
Sbjct: 68  TCGTDRNAYVWTLKGRTW 85

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 361 LSLSSDGKILA-ATHGSTLQWLSVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVS 418
            + + D   +A   +   +        K +   E K H G++T + WAP +        +
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS--------N 64

Query: 419 VLATSSVDKKVKLW 432
            + T   D+   +W
Sbjct: 65  RIVTCGTDRNAYVW 78

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 59.0 bits (141), Expect = 4e-10
 Identities = 41/359 (11%), Positives = 83/359 (23%), Gaps = 51/359 (14%)

Query: 96  GLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVV 155
           G    +  + +        + V  +D AS   +K     +P    P     A +  +  V
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHV--VDVASDTVYK--SCVMPDKFGPGTAMMAPDNRTAYV 56

Query: 156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT 215
                       YG+   I  +  K         +  E  +     AI            
Sbjct: 57  LN--------NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 108

Query: 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN--NMAAISPNGRFLAAAAFTADV 273
                      +   + ++    G     V T  +     +   + +G    A      +
Sbjct: 109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM 168

Query: 274 KVW--------------EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319
            V                  YS   ++                T   F  + +   TA  
Sbjct: 169 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228

Query: 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ 379
                  ++       ++                 T  Y     S           + L 
Sbjct: 229 LYGYLSVDLKTGKTHTQEFAD-------------LTELYFTGLRSPKDPNQIYGVLNRLA 275

Query: 380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438
              ++  K++  A    +    C+A+  K           L        + ++   +LE
Sbjct: 276 KYDLKQRKLIKAAN--LDHTYYCVAFDKKG--------DKLYLGGTFNDLAVFNPDTLE 324

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.5 bits (132), Expect = 4e-09
 Identities = 31/292 (10%), Positives = 67/292 (22%), Gaps = 30/292 (10%)

Query: 61  SHSKPHSHSHGDKDQNKRHHPLDVNT-LKGHGDSVTGLCFSSDGKCLATACADGVIRVHK 119
            ++        D D  K     ++++     G S+     S DGK +             
Sbjct: 57  LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL--- 113

Query: 120 LDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEG 179
            D    K  +    +   G     V        + +      G       +   +    G
Sbjct: 114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTG 173

Query: 180 KQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY-------GTADGSTIIASCSEGTDIS 232
           K    LP      + +   D             +          D     A+        
Sbjct: 174 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 233

Query: 233 IWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292
               KTGK       +  +     +               +  +++             +
Sbjct: 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL---------KQRKL 284

Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL 344
           ++          + F    +++        L V+          +P TL+ +
Sbjct: 285 IKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVF----------NPDTLEKV 326

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 90  HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
              +   + F   G  L        + V   +  + +  K +++   PGG  +   
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAV--FNPDTLEKVKNIKL---PGGDMSTTT 340

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.0 bits (138), Expect = 6e-10
 Identities = 36/270 (13%), Positives = 78/270 (28%), Gaps = 29/270 (10%)

Query: 81  PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP 140
             D      H    T    S  G   A+    G +R+      +      + +   P   
Sbjct: 48  LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107

Query: 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDK 200
            +  + +    ++           L+  G      T + +  + +     +         
Sbjct: 108 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 167

Query: 201 RAILTLFG---------------ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245
              + +F                   +       ++ AS      I +++G  G   G  
Sbjct: 168 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 227

Query: 246 DTNQLKN-------NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298
           + + LKN            SP+G  +A+A+    +K+W +       V+    V    G 
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV---ATLKVEKTIPV----GT 280

Query: 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
           +     L      + +++ S +G +   N 
Sbjct: 281 RIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (116), Expect = 4e-07
 Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 9/78 (11%)

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
             +P G  +     T  V    +         ++T       H    T    +P+     
Sbjct: 24  GNTPAGDKIQYCNGT-SVYTVPV--------GSLTDTEIYTEHSHQTTVAKTSPSGYYCA 74

Query: 316 TASKDGTLRVWNINVRYH 333
           +    G +R+W+     H
Sbjct: 75  SGDVHGNVRIWDTTQTTH 92

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 9/72 (12%)

Query: 361 LSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
           L  +  G  +   +G+++  + V +    +     H  + T    +P             
Sbjct: 23  LGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPSGY--------YC 73

Query: 421 ATSSVDKKVKLW 432
           A+  V   V++W
Sbjct: 74  ASGDVHGNVRIW 85

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 1e-09
 Identities = 45/362 (12%), Positives = 96/362 (26%), Gaps = 78/362 (21%)

Query: 78  RHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK------SFKFL 131
           RH    ++        V   C   D + + +   D  I++   +    K      +   L
Sbjct: 2   RHSLQRIHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59

Query: 132 RINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIK 191
            +        T  + +      V     L+    +          N              
Sbjct: 60  CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119

Query: 192 WEHHKVHDKRAILTLFGASATYGTADGSTI-IASCSEGTDISIWHGKTGKLLGNVDTNQL 250
           W+     D      L G  A     D     I S S    I +W+  T + +  ++ ++ 
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK- 178

Query: 251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN 310
              +A +    R + + +    +++W+I                           C   +
Sbjct: 179 -RGIACLQYRDRLVVSGSSDNTIRLWDIECGA----------CLRVLEGHEELVRCIRFD 227

Query: 311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370
           +++I++ + DG ++VW+                                   L +     
Sbjct: 228 NKRIVSGAYDGKIKVWD-----------------------------------LVAALDPR 252

Query: 371 AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK 430
           A      L+ L              H G +  + +              + +SS D  + 
Sbjct: 253 APAGTLCLRTL------------VEHSGRVFRLQFDEFQ----------IVSSSHDDTIL 290

Query: 431 LW 432
           +W
Sbjct: 291 IW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 6/112 (5%)

Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
               +++  S+ T I +W  + G  L  ++ ++       I  + + + + A+   +KVW
Sbjct: 187 RDRLVVSGSSDNT-IRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVW 243

Query: 277 EIVYSKDGLVKAVTSVMQ-LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
           ++V + D    A T  ++ L  H   V       +  QI+++S D T+ +W+
Sbjct: 244 DLVAALDPRAPAGTLCLRTLVEHSGRVF--RLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 71  GDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
              D       L + TL  H   V  L F  D   + ++  D  I +
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 291

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.6 bits (133), Expect = 5e-09
 Identities = 46/374 (12%), Positives = 99/374 (26%), Gaps = 32/374 (8%)

Query: 82  LDVNTLK-----GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP 136
           +D +T +       G +V     S+ G+ L     DG + +  L      +   ++I   
Sbjct: 47  IDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 106

Query: 137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
                T+          +   +      +      +       +  +             
Sbjct: 107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 166

Query: 197 VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD-TNQLKNNMA 255
                         A   +      I +  E   I +        L   + + +   +  
Sbjct: 167 --------------AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG 212

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
            +  + R+   AA     K+  I   +  LV    +  Q         ++          
Sbjct: 213 GLDGSHRYFITAANA-RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT 271

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIP------LLDSNGATLQYDRLSLSSDGKI 369
           +   D ++ +   +   H D   K L   P        +     +   Y   +L+ + +I
Sbjct: 272 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEI 331

Query: 370 ---LAATHGSTLQWLSVE-TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQ-QVSVLATSS 424
              +A      +     +   K L  AE A   E        +    G +   SV     
Sbjct: 332 SGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKD 391

Query: 425 VDKKVKLWLAPSLE 438
            +  + +    +LE
Sbjct: 392 QESALVVVDDKTLE 405

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (107), Expect = 7e-06
 Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 19/178 (10%)

Query: 215 TADGSTIIASCSEGTD-ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADV 273
             D   + +        I++  G T ++   +DT     +++ +S +GR+L        V
Sbjct: 27  DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKV 85

Query: 274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNINVRY 332
            + ++          V  +      +S  T        +  I  A       + +     
Sbjct: 86  NMIDL---WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 142

Query: 333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSV-ETGKVL 389
                       P  +  + G T              + A+H      ++V ETGK+L
Sbjct: 143 ------------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 188

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 9e-09
 Identities = 16/153 (10%), Positives = 41/153 (26%), Gaps = 14/153 (9%)

Query: 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL 348
           + +    K H + +  +    +    ++ S DG L+VW+  +  + +   K+        
Sbjct: 4   IATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 349 LDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDT---------AEKAHEGE 399
              +   LQ           +   +    L +  +                      +  
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121

Query: 400 ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
              + W      + +     L  + V     +W
Sbjct: 122 FWALKWGASNDRLLSH---RLVATDVKGTTYIW 151

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 43/371 (11%), Positives = 89/371 (23%), Gaps = 38/371 (10%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
            N  K H   +  +   +      +   DG ++V       +++ K    +         
Sbjct: 7   ANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYS----HFVHK 60

Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAI---STNEGKQQSKLPGPEIKWEHHKVHDK 200
                      +       C +        +         +  K+   ++      +   
Sbjct: 61  SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120

Query: 201 RAILTLFGASATY--------GTADGSTIIASCSEGTDI-------SIWHGKTGKLLGNV 245
                 +GAS               G+T I       D             +    + + 
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305
            T         IS  G     A    +  V     S    +    S   +  + +++  +
Sbjct: 181 MTPSQFATSVDISERGLI---ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237

Query: 306 CFAPNSEQIITASKDGTLRVWNI----NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL 361
            F+P    +  A    +     +               T          ++ + +     
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297

Query: 362 SLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA 421
           + S +    A   G    W  V+T + + T    H  +I            G+     LA
Sbjct: 298 NDSGETLCSAGWDGKLRFW-DVKTKERITTL-NMHCDDIEIEEDILAVDEHGDS----LA 351

Query: 422 TSSVDKKVKLW 432
              V   VK  
Sbjct: 352 EPGVF-DVKFL 361

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 53/339 (15%), Positives = 108/339 (31%), Gaps = 35/339 (10%)

Query: 90  HGDSVTGLCFSS-DGKCLATACADGVIRVHKL---DDASSKSFKFLRINLPPGGPPTAVA 145
           H D +  +   + +   +AT    G +  +++   D+     F+ L +        +  A
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILT 205
               A++  + +H L    +              +  S         E     +     +
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 206 LFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI--SPNGRF 263
            F  S    +  G  +IA+      + I    T + L N ++     N +    S     
Sbjct: 185 QFATSVDI-SERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241

Query: 264 LAAAAFTA------------DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS 311
             +    A            + +  E + S      +  + +    H S V  L F  + 
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301

Query: 312 EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371
           E + +A  DG LR W++  +  +     TL +        +   ++ D L++   G  LA
Sbjct: 302 ETLCSAGWDGKLRFWDVKTKERI----TTLNM------HCDDIEIEEDILAVDEHGDSLA 351

Query: 372 ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTI 410
                 +++L     K   +   A   E  C     ++I
Sbjct: 352 EPGVFDVKFLK----KGWRSGMGADLNESLCCVCLDRSI 386

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 36/271 (13%), Positives = 76/271 (28%), Gaps = 44/271 (16%)

Query: 63  SKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDD 122
               S+S              V +        T +  S  G  +AT   +G +++ +L  
Sbjct: 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELST 214

Query: 123 ASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ 182
                    +              +    S  + +   S     +     + S       
Sbjct: 215 LRPLYNFESQ-------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 261

Query: 183 SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS---TIIASCSEGTDISIWHGKTG 239
               G  I       H  +A L  F  S+   +   +     + S      +  W  KT 
Sbjct: 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321

Query: 240 KLL----GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL 295
           + +     + D  +++ ++ A+  +G  LA         V+++ + K G           
Sbjct: 322 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVKFLKKG----------- 364

Query: 296 KGHKSAVTWLCFAPNSEQIITASKDGTLRVW 326
                       A  +E +     D ++R +
Sbjct: 365 ------WRSGMGADLNESLCCVCLDRSIRWF 389

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 1e-08
 Identities = 37/252 (14%), Positives = 72/252 (28%), Gaps = 12/252 (4%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
              GH  ++T L  S+DGK L +A A+G I    +    S                T + 
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR----VFPDVHATMITGIK 62

Query: 146 FADNATSIVVATHNL--------SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKV 197
                    V+  +         SG         K  S   G   S      +   +  +
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 198 HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI 257
                        +   +    +                       +V   +   + A I
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 258 SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317
           +        A   A  +  +++         +        H + V  + ++P++ ++ T 
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 318 SKDGTLRVWNIN 329
           S D ++ VWN+N
Sbjct: 243 SLDNSVIVWNMN 254

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.4 bits (105), Expect = 7e-06
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 234 WHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM 293
            +        +   +  K    + SP+   LA  +    V VW +    D        ++
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD------HPII 262

Query: 294 QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
               H  +        N   I++A +D  ++ WN+
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 5/34 (14%), Positives = 10/34 (29%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
           +     H  S        +   + +A  D  I+ 
Sbjct: 261 IIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 29/345 (8%), Positives = 67/345 (19%), Gaps = 44/345 (12%)

Query: 89  GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFAD 148
                +  +    D K            +   D  + K+ KF                  
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE---------------- 83

Query: 149 NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFG 208
                 V    +     +               ++  P    +     + D         
Sbjct: 84  --NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF 141

Query: 209 ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA 268
            +  +    G T            +   K          +           + + L   +
Sbjct: 142 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFD----ADSKNLYYLS 197

Query: 269 FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
           + +     +     +   + V+    +     +       P S        D        
Sbjct: 198 YRSLDPSPD-RVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 256

Query: 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG-STLQWLSVETGK 387
           +       D + +  L         + L Y                    L    V+T K
Sbjct: 257 SPINVDPGDYRMIIPLE-------SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK 309

Query: 388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
           V        +  +T +  +             +     D K+  +
Sbjct: 310 V-----TEVKNNLTDLRLSADR--------KTVMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 11/128 (8%), Positives = 42/128 (32%), Gaps = 16/128 (12%)

Query: 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKV 275
             G   +    + +          +++  ++++ L  ++        +   A     +  
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 302

Query: 276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLD 335
           ++                ++   K+ +T L  + + + ++    DG +  + +       
Sbjct: 303 YD------------VKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP---- 346

Query: 336 EDPKTLKV 343
           ED +T++ 
Sbjct: 347 EDERTVET 354

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 8e-05
 Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 71  GDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKF 130
             +      + +    +    +++T L  S+D K +     DG I    L+    +  + 
Sbjct: 294 APEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE--RT 351

Query: 131 LRINLPP 137
           +  +  P
Sbjct: 352 VETDKRP 358

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (122), Expect = 5e-08
 Identities = 22/250 (8%), Positives = 58/250 (23%), Gaps = 9/250 (3%)

Query: 85  NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV 144
           +  + H + +  L  S   +   ++ +                 +    +    G    +
Sbjct: 40  SMHQDHSNLIVSLDNSKAQEY--SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 97

Query: 145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAIL 204
              D+   +   T ++               +          G  I+       +    L
Sbjct: 98  TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL 157

Query: 205 TLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFL 264
                +     +   +     +      I                 + +           
Sbjct: 158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 217

Query: 265 AAAAFTADVKVWEIVYSKDGLVK------AVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
             A      +      S D  +        +  +  L  HK  V  L +   S  ++++ 
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSG 276

Query: 319 KDGTLRVWNI 328
            D  ++ WN+
Sbjct: 277 ADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
           +  + GH   +T L   P    +I+ S DG +  W+ +
Sbjct: 6   LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 4e-05
 Identities = 36/357 (10%), Positives = 85/357 (23%), Gaps = 86/357 (24%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
           + T+ GH   +T L  +     L +   DG I                           +
Sbjct: 6   LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDH----------SNLIVS 51

Query: 144 VAFADNATSIVV-----ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVH 198
           +  +       +        N      +    + A + N+G         ++        
Sbjct: 52  LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111

Query: 199 DKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAIS 258
           D    + L    +    +     +      T                   + K +  +IS
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS 171

Query: 259 PNGRFLAAAAFTADVKVWEIVYSK---DGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
           P+  ++AA      + ++++   +          + +  +    +           + + 
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG 375
           T S D  + +++                                   +    KI+ A + 
Sbjct: 232 TGSLDTNIFIYS-----------------------------------VKRPMKIIKALNA 256

Query: 376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
                               H+  +  + W            S L +S  D  +K W
Sbjct: 257 --------------------HKDGVNNLLWETP---------STLVSSGADACIKRW 284

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 30/279 (10%), Positives = 80/279 (28%), Gaps = 32/279 (11%)

Query: 72  DKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKF- 130
           D    +    +D++T +    S+ G   S DGK LA   +   + +   +   ++   + 
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 131 -----LRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKL 185
                 R         T +A+A + + +     +L           +         QS  
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDK-----PIQSWE 176

Query: 186 PGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245
                + +   V ++     +          D        +  T +     +TG++    
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA-DPTAYRTGLLTMDLETGEMAM-R 234

Query: 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305
           +   +     + + N     A      ++ +++            + ++      +   +
Sbjct: 235 EVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDL---------EKNASIKRVPLPHSYYSV 285

Query: 306 CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL 344
             + +   +      G L  +          D +TL+  
Sbjct: 286 NVSTDGSTVWLGGALGDLAAY----------DAETLEKK 314

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 35/271 (12%), Positives = 81/271 (29%), Gaps = 47/271 (17%)

Query: 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK-----NNMAAISPNGRFLAAAAF 269
              G    A+ ++   +      TG+ LG +D +  +        AA+SP+G+ LA    
Sbjct: 42  APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES 101

Query: 270 TADVKVWEIVYSKDGLVKAVTSVMQLK---GHKSAVTWLCFAPNSEQIITASKDGTLRVW 326
              +++         +       +  +        +T L +A +  ++    +D  +   
Sbjct: 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161

Query: 327 -------NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTL 378
                  +  ++    E      VL +     +   +     +   D        + + L
Sbjct: 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221

Query: 379 QWLSVETGKVLDTAEKAHEGEITCMAWAP-----------------------KTIPMGNQ 415
             + +ETG++     +  +      A  P                       K +P+ + 
Sbjct: 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHS 281

Query: 416 QVSV--------LATSSVDKKVKLWLAPSLE 438
             SV        +        +  + A +LE
Sbjct: 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 89  GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFA 147
               S   +  S+DG  +    A G +  +  D  + +    + +   PG    ++A  
Sbjct: 277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAY--DAETLEKKGQVDL---PGNASMSLASV 330

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 9/115 (7%), Positives = 34/115 (29%), Gaps = 6/115 (5%)

Query: 222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA--AISPNGRFLAAAAFTAD-VKVWEI 278
           I + +    + +   +   +   +             ++P GR   A    ++ +   ++
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333
                G       +   +    ++     +P+ + +        L + +  V+  
Sbjct: 64  ---VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.1 bits (121), Expect = 1e-07
 Identities = 48/369 (13%), Positives = 99/369 (26%), Gaps = 28/369 (7%)

Query: 82  LDVNTLK-----GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP 136
           +D ++ K       G +V     S+ G+ L     D  I +  L          ++I + 
Sbjct: 47  VDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE 106

Query: 137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
                ++          +   +        M GE          +   +       E   
Sbjct: 107 ARSVESSKFKGYEDRYTIAGAYW-PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 165

Query: 197 VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-NMA 255
                             + +    I +  E   + + + K    L              
Sbjct: 166 AA-------------IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212

Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
               + R+   AA  ++        SKD  + A+  V +         ++          
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVI--DSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST 270

Query: 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATH 374
           +   DG++ +   + + H     K +  L      S           L  D      A  
Sbjct: 271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 330

Query: 375 GSTLQWLSVETG----KVLDTAEKAHEGEITCMAWAPKTIPMGNQ-QVSVLATSSVDKKV 429
             ++    ++      +VL  AE A  GE       P+    G++   SV    +    +
Sbjct: 331 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL 390

Query: 430 KLWLAPSLE 438
            +    +L+
Sbjct: 391 VVVDDKTLK 399

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.2 bits (98), Expect = 8e-05
 Identities = 24/211 (11%), Positives = 59/211 (27%), Gaps = 21/211 (9%)

Query: 215 TADGSTIIA-SCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADV 273
             D   + + +  +   I++  G + K++  +DT    +    +S +GR+L      A +
Sbjct: 27  DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHIS-RMSASGRYLLVIGRDARI 85

Query: 274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333
            + ++   +      V  +      +S  +           I  +               
Sbjct: 86  DMIDLWAKE---PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142

Query: 334 LDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE 393
                      P  ++ + G T+             + A+H      ++V+     +T +
Sbjct: 143 -----------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----ETGK 186

Query: 394 KAHEGEITCMAWAPKTIPMGNQQVSVLATSS 424
                          +I            SS
Sbjct: 187 VLLVNYKDIDNLTVTSIGAAPFLADGGWDSS 217

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 6e-07
 Identities = 37/277 (13%), Positives = 77/277 (27%), Gaps = 38/277 (13%)

Query: 84  VNTLKGH-GDSVTGLCFS--SDGKCLATACADGVIRVHKLDD---ASSKSFKFLRINLPP 137
           V    GH    VT + FS     + L +    G + V        ++S            
Sbjct: 55  VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL 114

Query: 138 GGPPTAVAFADNATSIVVATHNLSG-------------------------CSLYMYGEEK 172
            GP + +++      + V                                C L      +
Sbjct: 115 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR 174

Query: 173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDIS 232
           +++  +        GP  K+        +    +     +  + +    + S  + +   
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234

Query: 233 IWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292
              G+  K + +          A    + +  A     A ++VW++  SK          
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK------CVQK 288

Query: 293 MQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNI 328
             L   +     +        +II+ S DGTL  + +
Sbjct: 289 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 5e-06
 Identities = 38/320 (11%), Positives = 78/320 (24%), Gaps = 41/320 (12%)

Query: 86  TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
           T +      T L +      +A  C      V  LDD  SK    ++         T V 
Sbjct: 15  TQRNF---TTHLSYDPTTNAIAYPCGKSAF-VRCLDDGDSKVPPVVQFTGHGSSVVTTVK 70

Query: 146 FADNATSIVVATHNLSGCSLYMYGEEK------------------------AISTNEGKQ 181
           F+    S  + + + SG  +                               +      + 
Sbjct: 71  FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130

Query: 182 QSKLPGPE---IKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT 238
                G +   +       +    +                 + +         +++   
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190

Query: 239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298
                  D    K             +           +I        + +  +   +  
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 250

Query: 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY 358
                +     +S++  T   D T+RVW          D  T K +    LD      Q 
Sbjct: 251 VQGGIFALSWLDSQKFATVGADATIRVW----------DVTTSKCVQKWTLDKQQLGNQQ 300

Query: 359 DRLSLSSDGKILAATHGSTL 378
             +  + +G+I++ +   TL
Sbjct: 301 VGVVATGNGRIISLSLDGTL 320

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 39/321 (12%), Positives = 73/321 (22%), Gaps = 36/321 (11%)

Query: 84  VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDAS-----SKSFKFLRINLPPG 138
           +  + G    +     + DG  +A A                      +         P 
Sbjct: 41  IGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD 98

Query: 139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVH 198
            P   V      TS+      L             +                      V 
Sbjct: 99  APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF----------KRMLDVP 148

Query: 199 DKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAIS 258
           D   I      +      DGS    +        I H +          N       A S
Sbjct: 149 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH-----PAYS 203

Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
                L    +T  +   ++             +  ++    A     + P   Q +   
Sbjct: 204 QKAGRLVWPTYTGKIHQIDLSSGD------AKFLPAVEALTEAERADGWRPGGWQQVAYH 257

Query: 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLD-SNGATLQYDR----LSLSSDGKILAAT 373
           +        ++ R        +  V+ +        A  +       +++S D K L   
Sbjct: 258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA 317

Query: 374 HGS---TLQWLSVETGKVLDT 391
             +   TL     E+G+ L +
Sbjct: 318 LSTGDKTLYIHDAESGEELRS 338

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 24/183 (13%), Positives = 46/183 (25%), Gaps = 12/183 (6%)

Query: 216 ADGSTI----IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA 271
            D   +     A  +  T   +  G+ G+++G +D          ++ +G F+A A+   
Sbjct: 11  PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVF 68

Query: 272 DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN-- 329
                        +   VT +                             TL  +  +  
Sbjct: 69  SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 128

Query: 330 --VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVET 385
             V     E     ++L +P       T          DG +         T +    E 
Sbjct: 129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 188

Query: 386 GKV 388
              
Sbjct: 189 FHP 191

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 25/223 (11%), Positives = 48/223 (21%), Gaps = 18/223 (8%)

Query: 44  PDHQKKPTKPSQPISKKSHSKPHSHSHGDKDQNKRHHPLDVNTLK-GHGDSVTGLCFSSD 102
                    P+ P +   H +  S +                         +    +S  
Sbjct: 146 DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205

Query: 103 GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162
              L      G I      D SS   KFL           A  +       V     L  
Sbjct: 206 AGRLVWPTYTGKIHQI---DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262

Query: 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYG---TADGS 219
             L +   ++       +                      +              + D  
Sbjct: 263 IYLLVDQRDEWRHKTASRF----------VVVLDAKTGERLAKFEMGHEIDSINVSQDEK 312

Query: 220 T-IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNG 261
             + A  +    + I   ++G+ L +V+       +   +  G
Sbjct: 313 PLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 35/300 (11%), Positives = 79/300 (26%), Gaps = 36/300 (12%)

Query: 82  LDVNTLKGHGDSVTGLCFSSDGKCLATAC-ADGVIRVHKLDDASSKSFKFLRINLPPGGP 140
           L +  +      V  +  S D + L      +  +  +++                  G 
Sbjct: 27  LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--DGALTFAAESALPGS 84

Query: 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVH-- 198
            T ++       + V ++N    S+    +   +   +  +             ++    
Sbjct: 85  LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWV 144

Query: 199 ---------------DKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL- 242
                          D   +        T   A    ++   +E     +    +   + 
Sbjct: 145 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVW 204

Query: 243 ------GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV-----TS 291
                 GN++  Q  + M     + R+ A    T D +          L+         S
Sbjct: 205 ELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS 264

Query: 292 VMQLKGHKSAVTW---LCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIP 347
           V+  +G +   T         + + +I A  K   + V+ I     L  +     V   P
Sbjct: 265 VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGP 324

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 3/59 (5%)

Query: 192 WEHHKVHDKRAILTLFGASATYG---TADGSTIIASCSEGTDISIWHGKTGKLLGNVDT 247
                    +    +       G   T DG  +  + S    +S+    T  +   +  
Sbjct: 226 VSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	440
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.77
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.74
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.45
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.44
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.39
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.39
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.34
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.29
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.27
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.24
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.22
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.02
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.01
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.92
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.86
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.85
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.79
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.71
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.65
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.57
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.38
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.37
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.36
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.14
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.89
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.58
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.55
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.33
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.24
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.12
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.86
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.63
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.49
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.46
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.43
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.37
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.29
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.1
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.67
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.51
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.31
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.86
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.64
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.22
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.96
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.49
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.31
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.4
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.61
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.39
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	88.85
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	88.42
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	85.2

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-43  Score=307.13  Aligned_cols=292  Identities=16%  Similarity=0.206  Sum_probs=235.4

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ..++++ +|.+.|+|++|+|+|++||||+ ||.|+|||+................|.+.|.+++|+|++++|++++.+  
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d--  118 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA--  118 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS--
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc--
Confidence            345666 7999999999999999999998 899999999876554433444556788899999999999999999887  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                       ..+.+|+........             . .....+...       .....+++++. ++++++.|+.|++|++.+++.
T Consensus       119 -g~i~iwd~~~~~~~~-------------~-~~~~~~~~~-------v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~  175 (337)
T d1gxra_         119 -STLSIWDLAAPTPRI-------------K-AELTSSAPA-------CYALAISPDSK-VCFSCCSDGNIAVWDLHNQTL  175 (337)
T ss_dssp             -SEEEEEECCCC--EE-------------E-EEEECSSSC-------EEEEEECTTSS-EEEEEETTSCEEEEETTTTEE
T ss_pred             -ccccccccccccccc-------------c-ccccccccc-------ccccccccccc-ccccccccccccccccccccc
Confidence             467777654321000             0 000111111       11223467777 899999999999999999999


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      ......|...+.+++|+++++.+++++.|+.|++||++.++        .+..+ .|...|.+++|+|++++|++++.|+
T Consensus       176 ~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~--------~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~  246 (337)
T d1gxra_         176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR--------QLQQH-DFTSQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------EEEEE-ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccce--------eeccc-ccccceEEEEEcccccccceecccc
Confidence            98888899999999999999999999999999999986553        33333 4889999999999999999999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEI  400 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v  400 (440)
                      .|++||++.....               ....|...|.+++|+|+|++|++++ |+.|++||..+++.+..+  .|.+.|
T Consensus       247 ~i~i~d~~~~~~~---------------~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~~~~v  309 (337)
T d1gxra_         247 NVEVLHVNKPDKY---------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSV  309 (337)
T ss_dssp             CEEEEETTSSCEE---------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCE
T ss_pred             ccccccccccccc---------------cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc--cCCCCE
Confidence            9999999865432               1234556689999999999998865 899999999999988776  488999


Q ss_pred             EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ++++|+|++        ++|+||+.||+|+|||+
T Consensus       310 ~~~~~s~d~--------~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         310 LSCDISVDD--------KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEECTTS--------CEEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCC--------CEEEEEeCCCeEEEEEE
Confidence            999999998        89999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-42  Score=300.89  Aligned_cols=290  Identities=20%  Similarity=0.332  Sum_probs=234.9

Q ss_pred             ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578           81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL  160 (440)
Q Consensus        81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~  160 (440)
                      +.+.++|+||+++|++|+|+|++++||||+.||+|+|||+.+++.     ......|...|.+++|+|++..++.+..+.
T Consensus         7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~-----~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----ERTLKGHTDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----CEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE-----EEEEeCCCCcEEEEeeeccccccccccccc
Confidence            344678999999999999999999999999999999999987653     344567889999999999999999887663


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK  240 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  240 (440)
                      ...   .++.......                .....+....       ....+.+++. .+++++.|+.+++||+++++
T Consensus        82 ~~~---~~~~~~~~~~----------------~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~  134 (317)
T d1vyhc1          82 TIK---LWDFQGFECI----------------RTMHGHDHNV-------SSVSIMPNGD-HIVSASRDKTIKMWEVQTGY  134 (317)
T ss_dssp             CCC---EEETTSSCEE----------------ECCCCCSSCE-------EEEEECSSSS-EEEEEETTSEEEEEETTTCC
T ss_pred             ccc---cccccccccc----------------cccccccccc-------eeeeccCCCc-eEEeeccCcceeEeecccce
Confidence            222   2221111000                0001111111       1122366777 88999999999999999999


Q ss_pred             eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC---------
Q 013578          241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS---------  311 (440)
Q Consensus       241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---------  311 (440)
                      .+..+..|...+.++++++++++|++++.|+.|++|++....        ....+.+|...+.+++|+|++         
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  206 (317)
T d1vyhc1         135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--------CKAELREHRHVVECISWAPESSYSSISEAT  206 (317)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred             eeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce--------eeEEEecCCCCceEEEEeeccccceeeccc
Confidence            999999999999999999999999999999999999987654        667788899999999998753         


Q ss_pred             -----------CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEE
Q 013578          312 -----------EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQ  379 (440)
Q Consensus       312 -----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~  379 (440)
                                 .++++++.|+.|++||++++..+.              ...+|...|.+++|+|++++|++|+ ||.|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  272 (317)
T d1vyhc1         207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM--------------TLVGHDNWVRGVLFHSGGKFILSCADDKTLR  272 (317)
T ss_dssp             SCC-------CCEEEEEETTSEEEEEETTTTEEEE--------------EEECCSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred             cceeeeeccCCceeEeccCCCEEEEEECCCCcEEE--------------EEeCCCCCEEEEEECCCCCEEEEEECCCeEE
Confidence                       468999999999999998765432              1224556789999999999998865 89999


Q ss_pred             EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      +||+.+++++..+ .+|.+.|++++|+|++        .+|+||+.||+|+|||
T Consensus       273 iwd~~~~~~~~~~-~~h~~~V~~~~~s~~~--------~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         273 VWDYKNKRCMKTL-NAHEHFVTSLDFHKTA--------PYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EECCTTSCCCEEE-ECCSSCEEEEEECSSS--------SCEEEEETTSEEEEEC
T ss_pred             EEECCCCcEEEEE-cCCCCCEEEEEEcCCC--------CEEEEEeCCCeEEEeC
Confidence            9999999999988 5899999999999998        8999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.2e-41  Score=295.43  Aligned_cols=293  Identities=18%  Similarity=0.261  Sum_probs=231.7

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ..++|+||.+.|++|+|+|++++||||+.||+|+|||+.++.     .......|...|.+++|+|++.++++++.+.  
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~-----~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--  119 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDN--  119 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-----EEEEEECSCSCEEEEEECTTSSEEEEEETTC--
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce-----eEEEEecccccEEeeEeeccceeeeeecccc--
Confidence            456899999999999999999999999999999999998764     3344556788999999999999999998873  


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                       .+.+|+..........            ......+......        .....+. .+.....+.....+........
T Consensus       120 -~i~~~~~~~~~~~~~~------------~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  177 (340)
T d1tbga_         120 -ICSIYNLKTREGNVRV------------SRELAGHTGYLSC--------CRFLDDN-QIVTSSGDTTCALWDIETGQQT  177 (340)
T ss_dssp             -CEEEEESSSSCSCCCE------------EEEECCCSSCEEE--------EEEEETT-EEEEEETTTEEEEEETTTTEEE
T ss_pred             -eeeccccccccccccc------------ceecccccccccc--------ccccccc-cccccccccccccccccccccc
Confidence             3444433222110000            0000001110000        0111222 6777888888999998888777


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~  322 (440)
                      .....+...+....+.+.+.++++|+.|+.|++||++.+.        .+..+.+|...|++++|+|++.+|++++.|+.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~--------~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~  249 (340)
T d1tbga_         178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM--------CRQTFTGHESDINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccceeEeeeccccccceeEEeecCceEEEEECCCCc--------EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe
Confidence            7777778888999999999999999999999999986654        67788899999999999999999999999999


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeE
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEIT  401 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~  401 (440)
                      |++||++......            ......+...+.+++|+|++++|++|+ ||.|++||+.+++.+..+ .+|.+.|+
T Consensus       250 i~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~H~~~V~  316 (340)
T d1tbga_         250 CRLFDLRADQELM------------TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGHDNRVS  316 (340)
T ss_dssp             EEEEETTTTEEEE------------EECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEE
T ss_pred             EEEEeeccccccc------------ccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE-cCCCCCEE
Confidence            9999998654321            122234455688999999999999876 899999999999999988 59999999


Q ss_pred             EEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      +++|+|++        .+|+||+.||+|+|||
T Consensus       317 ~l~~s~d~--------~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         317 CLGVTDDG--------MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECTTS--------SCEEEEETTSCEEEEC
T ss_pred             EEEEeCCC--------CEEEEEccCCEEEEeC
Confidence            99999998        8999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.5e-41  Score=289.56  Aligned_cols=257  Identities=17%  Similarity=0.167  Sum_probs=210.2

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ..+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.......   ......|..+|.+++|+|+++++++++.    
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~v~~s~d~~~l~~~~~----  122 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL---KTTIPVFSGPVKDISWDSESKRIAAVGE----  122 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE---EEEEECSSSCEEEEEECTTSCEEEEEEC----
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc---ccccccccCccccccccccccccccccc----
Confidence            456788999999999999999999999999999999998765432   2233457789999999998876554432    


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                                                                                     +.+..+++|++++++..
T Consensus       123 ---------------------------------------------------------------~~~~~~~v~~~~~~~~~  139 (311)
T d1nr0a1         123 ---------------------------------------------------------------GRERFGHVFLFDTGTSN  139 (311)
T ss_dssp             ---------------------------------------------------------------CSSCSEEEEETTTCCBC
T ss_pred             ---------------------------------------------------------------ccccccccccccccccc
Confidence                                                                           13456899999999999


Q ss_pred             eeeeCCCCcccEEEecCCCCe-EEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578          243 GNVDTNQLKNNMAAISPNGRF-LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG  321 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg  321 (440)
                      ..+..|...|.+++|+|++++ |++|+.||.|++||++..+        ....+.+|...|+++.|+|++++|++++.|+
T Consensus       140 ~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~--------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~  211 (311)
T d1nr0a1         140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  211 (311)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccceeeecccccccccccccccccc--------cccccccccccccccccCccccccccccccc
Confidence            999999999999999999885 7889999999999986554        6777888999999999999999999999999


Q ss_pred             cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhcccc---
Q 013578          322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHE---  397 (440)
Q Consensus       322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~---  397 (440)
                      .|++||++++....       .+........+|...|.+++|+|++++|++|+ |+.|++||+++++++..+. .|.   
T Consensus       212 ~v~~~d~~~~~~~~-------~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~-~~~~~~  283 (311)
T d1nr0a1         212 TIVLYNGVDGTKTG-------VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP-VGTRIE  283 (311)
T ss_dssp             CEEEEETTTCCEEE-------ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSGG
T ss_pred             cccccccccccccc-------cccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE-CCCCcc
Confidence            99999998664432       22222334456777899999999999999876 8999999999999988774 333   


Q ss_pred             CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ..+.++.|+++          .|++++.||.|++||++
T Consensus       284 ~~~~~~~~~~~----------~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         284 DQQLGIIWTKQ----------ALVSISANGFINFVNPE  311 (311)
T ss_dssp             GCEEEEEECSS----------CEEEEETTCCEEEEETT
T ss_pred             ceEEEEEecCC----------EEEEEECCCEEEEEeCC
Confidence            34556666654          68999999999999975

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-40  Score=298.32  Aligned_cols=312  Identities=17%  Similarity=0.232  Sum_probs=219.6

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCccee-------------eEEecCCCCCCCceEEEccCC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFK-------------FLRINLPPGGPPTAVAFADNA  150 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~-------------~~~~~~~~~~~v~~v~~~~~~  150 (440)
                      +....+|++.|+||+|+|||++||+|+ |++|+|||+.++......             .......+...|.+++|+|++
T Consensus        55 l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~  133 (388)
T d1erja_          55 LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG  133 (388)
T ss_dssp             EEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred             eEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC
Confidence            344447999999999999999999987 899999999876432100             011123456679999999999


Q ss_pred             CeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce
Q 013578          151 TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD  230 (440)
Q Consensus       151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  230 (440)
                      ++|++++.+   ..+.+|+........                ....+...+.       ...+++++. .+++++.++.
T Consensus       134 ~~l~s~~~d---g~v~i~~~~~~~~~~----------------~~~~h~~~v~-------~~~~~~~~~-~~~~~~~~~~  186 (388)
T d1erja_         134 KFLATGAED---RLIRIWDIENRKIVM----------------ILQGHEQDIY-------SLDYFPSGD-KLVSGSGDRT  186 (388)
T ss_dssp             SEEEEEETT---SCEEEEETTTTEEEE----------------EECCCSSCEE-------EEEECTTSS-EEEEEETTSE
T ss_pred             Ccceecccc---ccccccccccccccc----------------cccccccccc-------ccccccccc-ccccccccee
Confidence            999999887   456666544331110                0011111111       122356666 8899999999


Q ss_pred             EEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC
Q 013578          231 ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN  310 (440)
Q Consensus       231 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~  310 (440)
                      +++||..+.........+...+....+.+++++|++|+.||.|++||+........ .........+|...|.+++|+|+
T Consensus       187 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~s~~  265 (388)
T d1erja_         187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER-LDSENESGTGHKDSVYSVVFTRD  265 (388)
T ss_dssp             EEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE-EC------CCCSSCEEEEEECTT
T ss_pred             eeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCcccee-eccccccccCCCCCEEEEEECCC
Confidence            99999999888877776666555555566899999999999999999865431100 01122334578999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccch
Q 013578          311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVL  389 (440)
Q Consensus       311 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~  389 (440)
                      +++|++++.|+.|++||+++............  .........|...|.+++|+|++++|++|+ ||.|++||+.+++++
T Consensus       266 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS--GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             SSEEEEEETTSEEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCEEEEEECCCcEEEEeccCCccccccccccc--cceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence            99999999999999999987654322111100  011122234556789999999999999876 899999999999999


Q ss_pred             hhhhccccCCeEEEEe------cCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          390 DTAEKAHEGEITCMAW------APKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       390 ~~~~~~h~~~v~~v~~------~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ..+ .+|.+.|+++++      +|++        .+|+||+.||+|+||+++
T Consensus       344 ~~l-~~H~~~V~~~~~~~~~~~spd~--------~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         344 LML-QGHRNSVISVAVANGSSLGPEY--------NVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEE-ECCSSCEEEEEECSSCTTCTTC--------EEEEEEETTSEEEEEEEE
T ss_pred             EEE-eCCCCCEEEEEEecCcccCCCC--------CEEEEEeCCCEEEEEeee
Confidence            988 599999999975      5566        899999999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-38  Score=274.21  Aligned_cols=292  Identities=16%  Similarity=0.183  Sum_probs=208.7

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ..++++||.++|++|+|+|||++|+||+.||+|++||+.++...    ......|...|.+++|+|+++.+++ +.+   
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~----~~~~~~h~~~v~~v~~~~~g~~~~~-~~d---   75 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN----RVFPDVHATMITGIKTTSKGDLFTV-SWD---   75 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE----ECSSCSCSSCEEEEEECTTSCEEEE-ETT---
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE----EEEcCCCCCcEEEEEeeccceeecc-cce---
Confidence            45789999999999999999999999999999999999876421    1222457789999999999975544 444   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                      ..+.+|+..........          ..   ...+..       ....+.+++++. +++++ .++.+++|+...  ..
T Consensus        76 ~~v~~~~~~~~~~~~~~----------~~---~~~~~~-------~~~~~~~s~~g~-~~~~~-~~~~i~~~~~~~--~~  131 (299)
T d1nr0a2          76 DHLKVVPAGGSGVDSSK----------AV---ANKLSS-------QPLGLAVSADGD-IAVAA-CYKHIAIYSHGK--LT  131 (299)
T ss_dssp             TEEEEECSSSSSSCTTS----------CC---EEECSS-------CEEEEEECTTSS-CEEEE-ESSEEEEEETTE--EE
T ss_pred             eeEEEeccCCccccccc----------cc---cccccc-------cccccccccccc-ccccc-cccccccccccc--cc
Confidence            35666654332100000          00   000011       111233467777 45444 456799998542  22


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT  322 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~  322 (440)
                      ...  ....+.+++|+|++++|++|+.||.|++||+....       ........|...|++++|+|++.+|++++.|+.
T Consensus       132 ~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  202 (299)
T d1nr0a2         132 EVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-------VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK  202 (299)
T ss_dssp             EEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccc--ccccccccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccccc
Confidence            222  23457889999999999999999999999987543       112234468899999999999999999999999


Q ss_pred             EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhh--hhccccCC
Q 013578          323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDT--AEKAHEGE  399 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~--~~~~h~~~  399 (440)
                      |++||+.++.....           .....+|...|.+++|+|++++|++|+ |+.|++||+.++.....  ....+...
T Consensus       203 i~~~~~~~~~~~~~-----------~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~  271 (299)
T d1nr0a2         203 VIPYSVANNFELAH-----------TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS  271 (299)
T ss_dssp             EEEEEGGGTTEESC-----------CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSC
T ss_pred             cccccccccccccc-----------cccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCc
Confidence            99999986543321           122345667799999999999999875 89999999988764332  21234456


Q ss_pred             eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          400 ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       400 v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      |.++.|.++         .+|+||+.||+|++||++
T Consensus       272 v~~~~~~~~---------~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         272 VNSVIWLNE---------TTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEEEEET---------TEEEEEETTSCEEEEECC
T ss_pred             EEEEEECCC---------CEEEEEeCCCEEEEEecc
Confidence            777777655         689999999999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-37  Score=275.37  Aligned_cols=261  Identities=14%  Similarity=0.109  Sum_probs=207.2

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      +.++|+|++|+|||++||+|+.||.|+|||+.+++..   ......+|.++|.+++|+|+++                  
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~---~~~~l~gH~~~V~~l~fsp~~~------------------   64 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---QVHELKEHNGQVTGVDWAPDSN------------------   64 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---EEEEEECCSSCEEEEEEETTTT------------------
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE---EEEEecCCCCCEEEEEECCCCC------------------
Confidence            3578999999999999999999999999999765422   3444567889999999998865                  


Q ss_pred             cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee--eeeeC
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL--GNVDT  247 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~  247 (440)
                                                                         +|++++.|++|++||+.++...  ..+..
T Consensus        65 ---------------------------------------------------~l~s~s~D~~i~vWd~~~~~~~~~~~~~~   93 (371)
T d1k8kc_          65 ---------------------------------------------------RIVTCGTDRNAYVWTLKGRTWKPTLVILR   93 (371)
T ss_dssp             ---------------------------------------------------EEEEEETTSCEEEEEEETTEEEEEEECCC
T ss_pred             ---------------------------------------------------EEEEEECCCeEEEEeeccccccccccccc
Confidence                                                               6778888999999999877543  44556


Q ss_pred             CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      +...+.+++|+|+++.|++|+.|+.|++|++.....    .........+|...|.+++|+|++++|++++.|++|++||
T Consensus        94 ~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~----~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~  169 (371)
T d1k8kc_          94 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND----WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS  169 (371)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT----EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccceeecccCcceeeeeecccc----cccccccccccccccccccccccccceeccccCcEEEEEe
Confidence            788899999999999999999999999999876542    2223445667899999999999999999999999999999


Q ss_pred             cCccccccCCCCccc----cccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEE
Q 013578          328 INVRYHLDEDPKTLK----VLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITC  402 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~  402 (440)
                      +..............    ...........+...|.+++|+|+|++|++++ |+.|++||..+++.+..+ ..|..+|.+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~s  248 (371)
T d1k8kc_         170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-ASETLPLLA  248 (371)
T ss_dssp             CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-ECSSCCEEE
T ss_pred             eccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee-eccccccee
Confidence            876543221111100    01112334456677799999999999998865 899999999999998888 589999999


Q ss_pred             EEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          403 MAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       403 v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ++|+|++        .+|++ +.|+.+++|....
T Consensus       249 ~~fs~d~--------~~la~-g~d~~~~~~~~~~  273 (371)
T d1k8kc_         249 VTFITES--------SLVAA-GHDCFPVLFTYDS  273 (371)
T ss_dssp             EEEEETT--------EEEEE-ETTSSCEEEEEET
T ss_pred             eeecCCC--------CEEEE-EcCCceEEEEeeC
Confidence            9999997        66665 5588888876544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.6e-37  Score=264.72  Aligned_cols=245  Identities=17%  Similarity=0.197  Sum_probs=203.7

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY  168 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~  168 (440)
                      .+++.+.+++++|+|+.|+.++ ++.|.+|++++...     .....+|...|++++|+|+++                 
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~-----~~~~~~H~~~v~~~~~sp~g~-----------------   71 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-----TEIYTEHSHQTTVAKTSPSGY-----------------   71 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-----CEEECCCSSCEEEEEECTTSS-----------------
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCce-----eEEEcCCCCCEEEEEEeCCCC-----------------
Confidence            3456677899999999999986 56799999987653     234567889999999998876                 


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee--eeee
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL--GNVD  246 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~  246 (440)
                                                                          +|++|+.|++|++||+.+++..  ..+.
T Consensus        72 ----------------------------------------------------~latg~~dg~i~iwd~~~~~~~~~~~~~   99 (311)
T d1nr0a1          72 ----------------------------------------------------YCASGDVHGNVRIWDTTQTTHILKTTIP   99 (311)
T ss_dssp             ----------------------------------------------------EEEEEETTSEEEEEESSSTTCCEEEEEE
T ss_pred             ----------------------------------------------------eEeccccCceEeeeeeeccccccccccc
Confidence                                                                6788889999999999887643  5577


Q ss_pred             CCCCcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE-EEEEeCCCcE
Q 013578          247 TNQLKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ-IITASKDGTL  323 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~~~dg~i  323 (440)
                      .|...|.+++|+|++++|++++.  +..+++|++...+        ....+.+|...|++++|+|++++ |++|+.|+.|
T Consensus       100 ~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~--------~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i  171 (311)
T d1nr0a1         100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV  171 (311)
T ss_dssp             CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             cccCcccccccccccccccccccccccccccccccccc--------ccccccccccccccccccccceeeeccccccccc
Confidence            88899999999999999999986  4569999987654        56678899999999999999885 7889999999


Q ss_pred             EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhh------ccc
Q 013578          324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAE------KAH  396 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~------~~h  396 (440)
                      ++||+++.....              ....|...|.++.|+|+++++++++ |+.+++||..+++....+.      .+|
T Consensus       172 ~i~d~~~~~~~~--------------~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h  237 (311)
T d1nr0a1         172 AIFEGPPFKFKS--------------TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH  237 (311)
T ss_dssp             EEEETTTBEEEE--------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred             cccccccccccc--------------ccccccccccccccCccccccccccccccccccccccccccccccccccccccc
Confidence            999998764321              2234566789999999999999865 8999999998887554332      468


Q ss_pred             cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          397 EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       397 ~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      .+.|++++|+|++        .+|++|+.||.|+|||+++++
T Consensus       238 ~~~V~~~~~s~~~--------~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         238 SGSVFGLTWSPDG--------TKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             SSCEEEEEECTTS--------SEEEEEETTSEEEEEETTTTE
T ss_pred             cccccccccCCCC--------CEEEEEeCCCeEEEEECCCCc
Confidence            8999999999998        899999999999999998775

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-36  Score=270.16  Aligned_cols=280  Identities=17%  Similarity=0.162  Sum_probs=211.0

Q ss_pred             CCCCCCCCCcccCcc------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578           68 HSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP  141 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v  141 (440)
                      .+.+..++.+++|..      .+..|++|.++|++|+|+|++++|++|+.|++|+|||+.+....   .......|...|
T Consensus        22 la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~---~~~~~~~~~~~v   98 (371)
T d1k8kc_          22 IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK---PTLVILRINRAA   98 (371)
T ss_dssp             EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE---EEEECCCCSSCE
T ss_pred             EEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc---cccccccccccc
Confidence            355666777877765      46778999999999999999999999999999999999865422   233345677889


Q ss_pred             ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578          142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI  221 (440)
Q Consensus       142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (440)
                      .+++|+|+++                                                                     .
T Consensus        99 ~~i~~~p~~~---------------------------------------------------------------------~  109 (371)
T d1k8kc_          99 RCVRWAPNEK---------------------------------------------------------------------K  109 (371)
T ss_dssp             EEEEECTTSS---------------------------------------------------------------------E
T ss_pred             cccccccccc---------------------------------------------------------------------c
Confidence            9999988765                                                                     5


Q ss_pred             EEEeeCCceEEEEeCCCCce----eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce----------e
Q 013578          222 IASCSEGTDISIWHGKTGKL----LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV----------K  287 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------~  287 (440)
                      +++++.|+.|++|++.....    ......+...|.+++|+|++++|++|+.|+.|++|++........          .
T Consensus       110 l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~  189 (371)
T d1k8kc_         110 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP  189 (371)
T ss_dssp             EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred             ceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccccccccc
Confidence            67777888899988766543    233446778899999999999999999999999999865431111          1


Q ss_pred             eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578          288 AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG  367 (440)
Q Consensus       288 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  367 (440)
                      .........+|...|.+++|+|++++|++++.|+.|++||++.+..+.              ....+..+|.+++|+|++
T Consensus       190 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~--------------~~~~~~~~v~s~~fs~d~  255 (371)
T d1k8kc_         190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA--------------TLASETLPLLAVTFITES  255 (371)
T ss_dssp             TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE--------------EEECSSCCEEEEEEEETT
T ss_pred             ceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccccee--------------eeecccccceeeeecCCC
Confidence            112455667899999999999999999999999999999998654321              112345568899999999


Q ss_pred             CEEEEecCCEEEEEEcCC--ccchh--------------------------------------hhhccccCCeEEEEecC
Q 013578          368 KILAATHGSTLQWLSVET--GKVLD--------------------------------------TAEKAHEGEITCMAWAP  407 (440)
Q Consensus       368 ~~l~~~~~~~i~i~d~~~--~~~~~--------------------------------------~~~~~h~~~v~~v~~~~  407 (440)
                      ++|++|.|+.+++|....  +....                                      .+...|.+.|+++++.+
T Consensus       256 ~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~  335 (371)
T d1k8kc_         256 SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS  335 (371)
T ss_dssp             EEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE
T ss_pred             CEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeC
Confidence            999999988766654322  11100                                      00024888999999987


Q ss_pred             CCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          408 KTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       408 ~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      .+.    .....|+|+|.||.|+||++++.
T Consensus       336 ~~~----~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         336 GGK----AKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             STT----TSCSEEEEEETTSEEEEEEHHHH
T ss_pred             CCC----cceEEEEEEcCCCeEEEEeCCcC
Confidence            641    12246999999999999998653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-36  Score=264.60  Aligned_cols=304  Identities=18%  Similarity=0.237  Sum_probs=219.3

Q ss_pred             cccccccCcce-eEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           84 VNTLKGHGDSV-TGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        84 ~~~l~~H~~~V-~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ..+|+||.+.| +|++|  +|++||||+.||+|+|||+.+++     .+....+|.+.|.+++|+|+ ..|++++.|   
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~-----~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D---   73 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHG-GILVSGSTD---   73 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE-----EEEEEECCSSCEEEEEEETT-TEEEEEETT---
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc-----EEEEEECCCCCEEEEEEcCC-CEEEEEecc---
Confidence            56799998886 56655  68899999999999999998764     44556688999999999985 578888777   


Q ss_pred             ceEEeecccccccccccccc--------------------CCCCCCceeeccccccccee--------------------
Q 013578          163 CSLYMYGEEKAISTNEGKQQ--------------------SKLPGPEIKWEHHKVHDKRA--------------------  202 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~--------------------  202 (440)
                      ..+.+|+.............                    .........|+.........                    
T Consensus        74 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d1nexb2          74 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  153 (355)
T ss_dssp             CCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTE
T ss_pred             cccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccce
Confidence            34455544332211100000                    00011122333221110000                    


Q ss_pred             EEEee--cccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEe
Q 013578          203 ILTLF--GASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVY  280 (440)
Q Consensus       203 ~~~~~--~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  280 (440)
                      .....  ........+++. +++++..|+.|++||+.+++.+.....+...+.++.++++++++++++.|+.|++||+..
T Consensus       154 ~~~~~~~~~~v~~~~~~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  232 (355)
T d1nexb2         154 VGVLRGHMASVRTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  232 (355)
T ss_dssp             EEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             eeeeeeccccccccccccc-eeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccc
Confidence            00000  001112234555 889999999999999999999988888888899999999999999999999999999876


Q ss_pred             cCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeee-
Q 013578          281 SKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD-  359 (440)
Q Consensus       281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-  359 (440)
                      +.        .+..+.+|...|.++++++  ++|++++.||.|++||+++.....         .  .     |...+. 
T Consensus       233 ~~--------~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~---------~--~-----~~~~~~~  286 (355)
T d1nexb2         233 GE--------LMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF---------S--Y-----HHTNLSA  286 (355)
T ss_dssp             CC--------EEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE---------E--E-----ECTTCCC
T ss_pred             cc--------ccccccccccccccccccc--ceeeeeecccccccccccccceec---------c--c-----ccCCceE
Confidence            55        6778889999999999964  689999999999999998653211         0  1     111122 


Q ss_pred             eEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          360 RLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       360 ~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ...+++++.++++|+|+.|++||+++++++.....+|.+.|++++|+|+         .++++++.||+++||.+
T Consensus       287 ~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~---------~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK---------TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT---------EEEEEEESSSCEEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC---------eEEEEEECCCcEEEEEE
Confidence            3467889999999999999999999999987655689999999999997         58889999999777654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-35  Score=257.21  Aligned_cols=308  Identities=16%  Similarity=0.254  Sum_probs=215.9

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      +.++|+||++.|.+ +++++|++|||||.||+|+|||+.+++     ......+|...|.+++|+++  .+++++.++  
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~-----~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~--   77 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMRDN--IIISGSTDR--   77 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-----EEEECCCCSSCEEEEEEETT--EEEEEETTS--
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-----EEEEEeCCCCCEEEEEeCCC--ccccceecc--
Confidence            46789999999865 466689999999999999999998765     45566788999999999875  788887763  


Q ss_pred             ceEEeeccccccccccccccC----------------CCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee
Q 013578          163 CSLYMYGEEKAISTNEGKQQS----------------KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS  226 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  226 (440)
                       .+.+|+..............                ........|+.............. ........... .++.++
T Consensus        78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~  154 (342)
T d2ovrb2          78 -TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV-AAVRCVQYDGR-RVVSGA  154 (342)
T ss_dssp             -CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCS-SCEEEEEECSS-CEEEEE
T ss_pred             -cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeeccc-ccceeeccccc-eeeeec
Confidence             44444433322111110000                000111222222211111111111 11111222333 688899


Q ss_pred             CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEE
Q 013578          227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC  306 (440)
Q Consensus       227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  306 (440)
                      .|+.|++||....+.+..+..|...+  ..+++++.+|++|+.||.|++||++..+        .+..+.+|...|.+++
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~--------~~~~~~~~~~~v~~~~  224 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGN--------CIHTLTGHQSLTSGME  224 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCC--------EEEEECCCCSCEEEEE
T ss_pred             CCCeEEEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCCeEEEeecccce--------eeeEecccccceeEEe
Confidence            99999999999999888888776544  4556688999999999999999986654        6778889999999988


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578          307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET  385 (440)
Q Consensus       307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~  385 (440)
                      +++  ++|++++.|+.|++||+........           ......+...+.+++++  +.++++|+ ||.|++||+++
T Consensus       225 ~~~--~~l~s~s~d~~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         225 LKD--NILVSGNADSTVKIWDIKTGQCLQT-----------LQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             EET--TEEEEEETTSCEEEEETTTCCEEEE-----------ECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             cCC--CEEEEEcCCCEEEEEeccccccccc-----------ccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCC
Confidence            864  5999999999999999986543211           11222344445556554  56777765 89999999999


Q ss_pred             ccchhhhh----ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe----EEEEeCCC
Q 013578          386 GKVLDTAE----KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK----VKLWLAPS  436 (440)
Q Consensus       386 ~~~~~~~~----~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~----i~vw~~~~  436 (440)
                      ++.+..+.    .+|.+.|++++|+|++        .+|++|+.||+    |++||++.
T Consensus       290 g~~i~~~~~~~~~~~~~~v~~v~~s~~~--------~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         290 GEFIRNLVTLESGGSGGVVWRIRASNTK--------LVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CCEEEEEEECTTGGGTCEEEEEEECSSE--------EEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCEEEEEecccCCCCCCCEEEEEECCCC--------CEEEEEeCCCCCeeEEEEEeCCC
Confidence            99876653    3678899999999998        89999999985    99999874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8e-34  Score=246.86  Aligned_cols=256  Identities=15%  Similarity=0.116  Sum_probs=190.7

Q ss_pred             cccccccc-CcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCcce---eeEEecCCCCCCCceEEEccCCCeEEEE
Q 013578           83 DVNTLKGH-GDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSKSF---KFLRINLPPGGPPTAVAFADNATSIVVA  156 (440)
Q Consensus        83 ~~~~l~~H-~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~~~---~~~~~~~~~~~~v~~v~~~~~~~~l~~~  156 (440)
                      .+..+.+| ...|++++|+|  +|.+|++|+.||+|+|||+........   ........+.++|.+++|++++++++++
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence            35567788 46899999998  678999999999999999976543221   1112234567889999999888765543


Q ss_pred             eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578          157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG  236 (440)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~  236 (440)
                      +                                                                   ++.++.+++|+.
T Consensus       134 ~-------------------------------------------------------------------~~~~~~~~~~~~  146 (325)
T d1pgua1         134 G-------------------------------------------------------------------EGRDNFGVFISW  146 (325)
T ss_dssp             E-------------------------------------------------------------------CCSSCSEEEEET
T ss_pred             e-------------------------------------------------------------------ccccceEEEEee
Confidence            3                                                                   234566889999


Q ss_pred             CCCceeeeeeCCCCcccEEEecCCCCe-EEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC-CCEE
Q 013578          237 KTGKLLGNVDTNQLKNNMAAISPNGRF-LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN-SEQI  314 (440)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l  314 (440)
                      .+++.+..+..|...+.+++|+|++.+ +++++.|+.+++||+...+     .........+|...|.+++|+|+ +.+|
T Consensus       147 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~-----~~~~~~~~~~~~~~v~~v~~~pd~~~~l  221 (325)
T d1pgua1         147 DSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----FSASDRTHHKQGSFVRDVEFSPDSGEFV  221 (325)
T ss_dssp             TTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----EEEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred             cccccceeeeecccccccccccccccceEEEeecccccccccccccc-----cceecccccCCCCccEEeeeccccceec
Confidence            999999999999999999999999875 6778999999999974332     11234445678889999999996 6789


Q ss_pred             EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC---CCCCEEEEec-CCEEEEEEcCCccchh
Q 013578          315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS---SDGKILAATH-GSTLQWLSVETGKVLD  390 (440)
Q Consensus       315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~~~-~~~i~i~d~~~~~~~~  390 (440)
                      ++++.|+.|++||++++..+..              ..+|...+..+.|+   |+|++|++++ |+.|++||+++++++.
T Consensus       222 ~s~~~d~~i~iwd~~~~~~~~~--------------l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         222 ITVGSDRKISCFDGKSGEFLKY--------------IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             EEEETTCCEEEEETTTCCEEEE--------------CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cccccccceeeeeecccccccc--------------ccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            9999999999999987654321              11222333334444   6788888765 9999999999999887


Q ss_pred             hhhccccC--CeE--EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          391 TAEKAHEG--EIT--CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       391 ~~~~~h~~--~v~--~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      .+. .|..  .+.  ++.|.++         .+|++++.||.|++||+
T Consensus       288 ~~~-~~~~~~~~~~~~~~~~~~---------~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         288 KWT-LDKQQLGNQQVGVVATGN---------GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEE-CCTTCGGGCEEEEEEEET---------TEEEEEETTSCEEEEET
T ss_pred             EEE-ecCCcccCeEEEEEECCC---------CEEEEEECCCEEEEEEC
Confidence            763 3433  333  4455555         48999999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-33  Score=239.72  Aligned_cols=271  Identities=16%  Similarity=0.211  Sum_probs=200.2

Q ss_pred             cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      .++++|+||.++|++|+|+|    |+||+.||+|++||+.+.          ...|...|.+++|+++. .+++++.|  
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~----------~~~h~~~V~~~~~~~~~-~~~s~s~D--   66 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM----------HQDHSNLIVSLDNSKAQ-EYSSISWD--   66 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE----------ECCCCSCEEEEECCSTT-CCEEEETT--
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC----------CCCCCCCEEEEEecCCC-eEEEEeec--
Confidence            46889999999999999987    999999999999998643          24677889999998765 46677665  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                       ..+.+|+.......                     .  .       +......+++. .+++ +.++.+.+|+..+++.
T Consensus        67 -~~v~~w~~~~~~~~---------------------~--~-------~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~  113 (287)
T d1pgua2          67 -DTLKVNGITKHEFG---------------------S--Q-------PKVASANNDGF-TAVL-TNDDDLLILQSFTGDI  113 (287)
T ss_dssp             -TEEEETTEEEEECS---------------------S--C-------EEEEEECSSSE-EEEE-ETTSEEEEEETTTCCE
T ss_pred             -cccccccccccccc---------------------c--c-------eeeeeeccCCc-eEEE-eecccceeeeccceee
Confidence             35666664432100                     0  0       01111234443 4444 4555689999999988


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEEecCC-CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTA-DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD  320 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d  320 (440)
                      +..+..+.   ...+++++++.+++++.++ .+++|++....       ........|...|++++|+|++.+|++++.|
T Consensus       114 ~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d  183 (287)
T d1pgua2         114 IKSVRLNS---PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE-------VSFDLKTPLRAKPSYISISPSETYIAAGDVM  183 (287)
T ss_dssp             EEEEECSS---CEEEEEECSSEEEEEETTTSCEEEEETTEEE-------EEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeccccc---eeeeeeccCcceeeeccccceeeeeeccccc-------eeeeeeeccCCceeEEEeccCcccccccccc
Confidence            88876543   3456788888999888875 69999975433       1222233577899999999999999999999


Q ss_pred             CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC----------CCEEEEec-CCEEEEEEcCCccch
Q 013578          321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD----------GKILAATH-GSTLQWLSVETGKVL  389 (440)
Q Consensus       321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----------g~~l~~~~-~~~i~i~d~~~~~~~  389 (440)
                      |.|++||+.++....             ....+|...|.+++|+|+          +.++++|+ |+.|++||++++...
T Consensus       184 g~i~i~d~~~~~~~~-------------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~  250 (287)
T d1pgua2         184 GKILLYDLQSREVKT-------------SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI  250 (287)
T ss_dssp             SCEEEEETTTTEEEE-------------CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC
T ss_pred             ccccceeeccccccc-------------ccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE
Confidence            999999998654321             122355667889999875          45788765 899999999875543


Q ss_pred             hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          390 DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       390 ~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      .....+|.+.|++++|+|++         .|+|+|.||.|++|++
T Consensus       251 ~~~~~~h~~~V~~v~~~~~~---------~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         251 IKALNAHKDGVNNLLWETPS---------TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEETTSSTTCEEEEEEEETT---------EEEEEETTSCEEEEEE
T ss_pred             EEEeCCCCCCeEEEEECCCC---------EEEEEECCCeEEEEEE
Confidence            33336899999999999985         6899999999999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-33  Score=242.38  Aligned_cols=255  Identities=15%  Similarity=0.159  Sum_probs=196.4

Q ss_pred             CCCcccCccc---------cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578           74 DQNKRHHPLD---------VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV  144 (440)
Q Consensus        74 ~~~~~~~~~~---------~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v  144 (440)
                      ++.+++|...         .....+|.+.|.+++|+|||++|++|+.||+|++||+......   .......|...+..+
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~  147 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR---IKAELTSSAPACYAL  147 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E---EEEEEECSSSCEEEE
T ss_pred             CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccc---ccccccccccccccc
Confidence            6677887532         2234589999999999999999999999999999999865443   333445677889999


Q ss_pred             EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578          145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS  224 (440)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  224 (440)
                      +|+|++..+++++.+   ..+.+|+.......                .....+...       ...+.+++++. .+++
T Consensus       148 ~~~~~~~~l~s~~~d---~~i~~~~~~~~~~~----------------~~~~~~~~~-------v~~l~~s~~~~-~~~~  200 (337)
T d1gxra_         148 AISPDSKVCFSCCSD---GNIAVWDLHNQTLV----------------RQFQGHTDG-------ASCIDISNDGT-KLWT  200 (337)
T ss_dssp             EECTTSSEEEEEETT---SCEEEEETTTTEEE----------------EEECCCSSC-------EEEEEECTTSS-EEEE
T ss_pred             ccccccccccccccc---cccccccccccccc----------------ccccccccc-------ccccccccccc-cccc
Confidence            999999999998876   34555554332110                000111111       11223467777 8899


Q ss_pred             eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578          225 CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW  304 (440)
Q Consensus       225 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (440)
                      ++.|+.|++||+++++.+..+. +...+.+++|+|++++|++|+.|+.|++||++...         ......|...|++
T Consensus       201 ~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~i~~  270 (337)
T d1gxra_         201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---------KYQLHLHESCVLS  270 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---------EEEECCCSSCEEE
T ss_pred             ccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccc---------cccccccccccce
Confidence            9999999999999998887765 56789999999999999999999999999986554         3456679999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEc
Q 013578          305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSV  383 (440)
Q Consensus       305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~  383 (440)
                      ++|+|++++|++++.||.|++||+.++..+..               ..+...|.+++|+|++++|++|+ |+.|+|||+
T Consensus       271 v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~---------------~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ---------------SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEE---------------EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCEEEE---------------ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999999999999999999987654321               12345688999999999999865 899999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-32  Score=238.19  Aligned_cols=310  Identities=16%  Similarity=0.111  Sum_probs=209.3

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCC-eEEEEeecCC
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNAT-SIVVATHNLS  161 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~~~~  161 (440)
                      .++.+++|++.|++|+|+|++++||+||.||+|+|||++.....  ........|..+|.+++|+|++. .+++++.+  
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~--~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d--   78 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ--   78 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE--EEEEEEEECSSCEEEEEEEESSSEEEEEEETT--
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc--eEEEEecCCCCCEEEEEEeCCCCCEEEEcccc--
Confidence            46678999999999999999999999999999999999875432  12233346889999999999765 56666655  


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                       ..+.+|+..............               ......       ....+++. .+++++.++.+++||++++..
T Consensus        79 -~~v~~w~~~~~~~~~~~~~~~---------------~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~  134 (342)
T d1yfqa_          79 -GEILKVDLIGSPSFQALTNNE---------------ANLGIC-------RICKYGDD-KLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             -SCEEEECSSSSSSEEECBSCC---------------CCSCEE-------EEEEETTT-EEEEEETTSEEEEECHHHHTT
T ss_pred             -cceeeeecccccccccccccc---------------cccccc-------cccccccc-cccccccccccceeecccccc
Confidence             456666654432111110000               000000       01122333 889999999999999865433


Q ss_pred             eee----eeC--CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEE
Q 013578          242 LGN----VDT--NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQI  314 (440)
Q Consensus       242 ~~~----~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l  314 (440)
                      ...    ...  .......+.+.+.+..+++++.|+.|++||++......     .......+...+.+..+.+ ++..+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  209 (342)
T d1yfqa_         135 GVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN-----GTIEESGLKYQIRDVALLPKEQEGY  209 (342)
T ss_dssp             BCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC-----CEEEECSCSSCEEEEEECSGGGCEE
T ss_pred             ceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc-----eeeeecccccceeeeEeecCCCCEE
Confidence            222    221  12334566788899999999999999999987654211     1222233445566666554 66789


Q ss_pred             EEEeCCCcEEEEecCccccccCCCCcccc-ccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhh
Q 013578          315 ITASKDGTLRVWNINVRYHLDEDPKTLKV-LPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTA  392 (440)
Q Consensus       315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~  392 (440)
                      ++++.||.+.+|++............... ..........+...+.+++|+|++++|++|+ ||.|++||+.+++.+..+
T Consensus       210 ~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence            99999999999998765433221111111 1111223445667789999999999999875 899999999999998887


Q ss_pred             hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          393 EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       393 ~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ...|  .+..++|+|++        .+|++++.|+.+++|...
T Consensus       290 ~~~~--~~~~~~~s~~~--------~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         290 AKFN--EDSVVKIACSD--------NILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CCCS--SSEEEEEEECS--------SEEEEEEECTHHHHCSSS
T ss_pred             cCCC--CCEEEEEEeCC--------CEEEEEEcCCcEEEeeee
Confidence            5334  44556677776        789999889888888653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-31  Score=233.86  Aligned_cols=296  Identities=14%  Similarity=0.192  Sum_probs=203.3

Q ss_pred             EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCC
Q 013578          107 ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLP  186 (440)
Q Consensus       107 ~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (440)
                      +.+..++.+.+|+..........+ ....+|.+.|++++|+|+|++|++++ +   ..+.+|+.................
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~H~~~V~~l~fs~dg~~lasg~-d---~~i~iW~~~~~~~~~~~~~~~~~~  106 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVEL-HKSLDHTSVVCCVKFSNDGEYLATGC-N---KTTQVYRVSDGSLVARLSDDSAAN  106 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEE-EEEEECSSCCCEEEECTTSSEEEEEC-B---SCEEEEETTTCCEEEEECC-----
T ss_pred             cccCCCCcEEEeCCCCCcceeeee-EeeCCCCCcEEEEEECCCCCEEEEEe-C---CeEEEEEecccceEeeeccccccc
Confidence            345567788889876544332222 23346889999999999999998875 4   367777765432221111100000


Q ss_pred             CC--ceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeE
Q 013578          187 GP--EIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFL  264 (440)
Q Consensus       187 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  264 (440)
                      ..  .........+..       ....+.++|+++ +|++|+.|+.|++||...++.+..+..|...|.++.+++++..+
T Consensus       107 ~~~~~~~~~~~~~~~~-------~V~~l~~s~~~~-~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  178 (388)
T d1erja_         107 KDPENLNTSSSPSSDL-------YIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL  178 (388)
T ss_dssp             ------------CCCC-------BEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccCCCC-------CEEEEEECCCCC-cceecccccccccccccccccccccccccccccccccccccccc
Confidence            00  000000001111       122345588888 89999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCcccc
Q 013578          265 AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKV  343 (440)
Q Consensus       265 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  343 (440)
                      ++++.++.+++||.....        .......+. ...++.+++ ++.+|++++.|+.|++||++++.....       
T Consensus       179 ~~~~~~~~i~~~d~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-------  242 (388)
T d1erja_         179 VSGSGDRTVRIWDLRTGQ--------CSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER-------  242 (388)
T ss_dssp             EEEETTSEEEEEETTTTE--------EEEEEECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE-------
T ss_pred             cccccceeeeeeeccccc--------ccccccccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCcccee-------
Confidence            999999999999986543        334444444 445555554 889999999999999999987654321       


Q ss_pred             ccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhh-----------hccccCCeEEEEecCCCCC
Q 013578          344 LPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTA-----------EKAHEGEITCMAWAPKTIP  411 (440)
Q Consensus       344 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~-----------~~~h~~~v~~v~~~~~~~~  411 (440)
                      +........+|...|.+++|+|++++|++++ |+.|++||+.+++.....           ...|...|++++|+|++  
T Consensus       243 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--  320 (388)
T d1erja_         243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND--  320 (388)
T ss_dssp             EC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG--
T ss_pred             eccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC--
Confidence            2222233346677899999999999999865 899999999876543221           13578899999999998  


Q ss_pred             CCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          412 MGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       412 ~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                            .+|++|+.||.|++||+.++++
T Consensus       321 ------~~l~sg~~dg~i~vwd~~~~~~  342 (388)
T d1erja_         321 ------EYILSGSKDRGVLFWDKKSGNP  342 (388)
T ss_dssp             ------CEEEEEETTSEEEEEETTTCCE
T ss_pred             ------CEEEEEeCCCEEEEEECCCCcE
Confidence                  8999999999999999998763

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-32  Score=242.34  Aligned_cols=275  Identities=14%  Similarity=0.134  Sum_probs=184.8

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcc-eeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKS-FKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      ....++|.+.|+++++++  ++|+|||.|++|+|||........ .........+...+..+....      ..      
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------   72 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ------AI------   72 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE------EE------
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEe------ee------
Confidence            356789999999999864  699999999999999987554211 000000111111111111000      00      


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL  242 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  242 (440)
                                                                        ........++++++.|+.|++|++......
T Consensus        73 --------------------------------------------------~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~  102 (393)
T d1sq9a_          73 --------------------------------------------------ERDAFELCLVATTSFSGDLLFYRITREDET  102 (393)
T ss_dssp             --------------------------------------------------ETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred             --------------------------------------------------ccCCCCCcEEEEEeCCCcEEEEEccCCCce
Confidence                                                              001111126889999999999987644322


Q ss_pred             eee----------eCCCCcccEEEecCC-----CCeEEEEecCCCEEEEEeEecCCCc----------eeeeeeeeeeec
Q 013578          243 GNV----------DTNQLKNNMAAISPN-----GRFLAAAAFTADVKVWEIVYSKDGL----------VKAVTSVMQLKG  297 (440)
Q Consensus       243 ~~~----------~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~  297 (440)
                      ..+          ..+...+..+++.++     +.++++++.||.+++|++.......          ............
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (393)
T d1sq9a_         103 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT  182 (393)
T ss_dssp             CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSS
T ss_pred             eeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccC
Confidence            111          112334556677664     4688999999999999986432110          011112223334


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC
Q 013578          298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS  376 (440)
Q Consensus       298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~  376 (440)
                      +...+.+++|+|++ +|++|+.|++|++||++++..+...       . ......+|...|.+++|+|+|++|++|+ |+
T Consensus       183 ~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~-------~-~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~  253 (393)
T d1sq9a_         183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF-------E-SQHSMINNSNSIRSVKFSPQGSLLAIAHDSN  253 (393)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE-------E-CCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred             CCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccc-------c-cccccccccceEEEcccccccceeeeecCCC
Confidence            56678999999987 8899999999999999876543211       0 1122346778899999999999999976 44


Q ss_pred             ---EEEEEEcCCccchhhhh------------ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          377 ---TLQWLSVETGKVLDTAE------------KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       377 ---~i~i~d~~~~~~~~~~~------------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                         .|++||+++++.+..+.            .+|.+.|++++|+|++        ++|+|||.|++|+|||+.++++
T Consensus       254 t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~--------~~l~S~s~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG--------ETLCSAGWDGKLRFWDVKTKER  323 (393)
T ss_dssp             TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS--------SEEEEEETTSEEEEEETTTTEE
T ss_pred             CcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC--------CeeEEECCCCEEEEEECCCCCE
Confidence               69999999988766542            4799999999999998        8999999999999999998753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-31  Score=230.00  Aligned_cols=248  Identities=13%  Similarity=0.131  Sum_probs=189.1

Q ss_pred             ceeEEEEccCCCEEEEeeCCC-cEEEEecCCCCCcceeeEEecCCC-CCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578           93 SVTGLCFSSDGKCLATACADG-VIRVHKLDDASSKSFKFLRINLPP-GGPPTAVAFADNATSIVVATHNLSGCSLYMYGE  170 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s~dg-~v~vW~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~  170 (440)
                      .+++++|+|+|+.|+.++.+. .|+.|+.......   ......+| ...|++++|+|+.                    
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~---~~~~~~gh~~~~v~~v~fsP~~--------------------   75 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVP---PVVQFTGHGSSVVTTVKFSPIK--------------------   75 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSC---SEEEECTTTTSCEEEEEECSST--------------------
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCcc---ceEEEeCCCCCCEEEEEEeeCC--------------------
Confidence            357899999999999887554 3566665443322   22233444 5679999999853                    


Q ss_pred             ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee--------
Q 013578          171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL--------  242 (440)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--------  242 (440)
                                                                    ++. ++++|+.||+|++||+..++..        
T Consensus        76 ----------------------------------------------~g~-~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~  108 (325)
T d1pgua1          76 ----------------------------------------------GSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVK  108 (325)
T ss_dssp             ----------------------------------------------TCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEE
T ss_pred             ----------------------------------------------CCC-EEEEEeCCCCEEEeeecCCcceeeeecccc
Confidence                                                          222 7889999999999998765432        


Q ss_pred             eeeeCCCCcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE-EEEEeC
Q 013578          243 GNVDTNQLKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ-IITASK  319 (440)
Q Consensus       243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~~~  319 (440)
                      ..+..+..+|.+++|++++++|++++.  ++.+++|+...++        .+..+.+|...|.+++|+|++.+ +++++.
T Consensus       109 ~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  180 (325)
T d1pgua1         109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN--------SLGEVSGHSQRINACHLKQSRPMRSMTVGD  180 (325)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC--------EEEECCSCSSCEEEEEECSSSSCEEEEEET
T ss_pred             cccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc--------cceeeeecccccccccccccccceEEEeec
Confidence            234567788999999999999988764  6779999986554        67778899999999999998875 678999


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-CCEEEEe-cCCEEEEEEcCCccchhhhhcccc
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-GKILAAT-HGSTLQWLSVETGKVLDTAEKAHE  397 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~  397 (440)
                      |+.|++||+...+...           .......+...|.+++|+|+ +.+++++ .|+.|++||+++++.+..+ .+|.
T Consensus       181 d~~v~~~d~~~~~~~~-----------~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l-~~~~  248 (325)
T d1pgua1         181 DGSVVFYQGPPFKFSA-----------SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI-EDDQ  248 (325)
T ss_dssp             TTEEEEEETTTBEEEE-----------EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC-CBTT
T ss_pred             ccccccccccccccce-----------ecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccc-cccc
Confidence            9999999987543221           12233455667899999997 5777765 5999999999999998888 4787


Q ss_pred             CCeEEEEec---CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          398 GEITCMAWA---PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       398 ~~v~~v~~~---~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ..+.++.|+   |++        .+|++++.|+.|+|||+++++
T Consensus       249 ~~v~~~~~s~~~~dg--------~~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         249 EPVQGGIFALSWLDS--------QKFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             BCCCSCEEEEEESSS--------SEEEEEETTSEEEEEETTTTE
T ss_pred             cccccceeeeeccCC--------CEEEEEeCCCeEEEEECCCCC
Confidence            777665555   555        799999999999999998765

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.8e-30  Score=222.01  Aligned_cols=274  Identities=16%  Similarity=0.282  Sum_probs=196.8

Q ss_pred             ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      .++.+.+|...|+|++|  ||++||||+.||+|+|||+.+++     ......+|...|.+++|  ++++|++++.|   
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~-----~~~~l~~H~~~V~~v~~--~~~~l~s~s~D---   74 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----CKRILTGHTGSVLCLQY--DERVIITGSSD---   74 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----EEEEECCCSSCEEEEEC--CSSEEEEEETT---
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc-----EEEEEecCCCCEeeeec--ccceeeccccc---
Confidence            35567788999999765  79999999999999999998765     44566788899999887  57789998877   


Q ss_pred             ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce-
Q 013578          163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL-  241 (440)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-  241 (440)
                      ..+.+|+.............                ..         .......... .++++..++.+.+|+..+... 
T Consensus        75 ~~i~~~~~~~~~~~~~~~~~----------------~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  128 (293)
T d1p22a2          75 STVRVWDVNTGEMLNTLIHH----------------CE---------AVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDI  128 (293)
T ss_dssp             SCEEEEESSSCCEEEEECCC----------------CS---------CEEEEECCTT-EEEEEETTSCEEEEECSSSSCC
T ss_pred             cccccccccccccccccccc----------------cc---------cccccccccc-ceeecccccceeEeeccccccc
Confidence            35556654433211110000                00         0000122333 788899999999999887653 


Q ss_pred             --eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578          242 --LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK  319 (440)
Q Consensus       242 --~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  319 (440)
                        ...+..+...+.++.+.  ...+++++.|+.|++||++..+        .+..+.++...|..+.++  +.++++++.
T Consensus       129 ~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~--------~~~~~~~~~~~v~~~~~~--~~~l~~~~~  196 (293)
T d1p22a2         129 TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCE--------FVRTLNGHKRGIACLQYR--DRLVVSGSS  196 (293)
T ss_dssp             EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCC--------EEEEEECCSSCEEEEEEE--TTEEEEEET
T ss_pred             cccccccccccccccceec--ccccccccCCCceeeecCCCCc--------EEEEEcccccccccccCC--CCeEEEecC
Confidence              33445566666655554  5678899999999999987655        677788898889888775  568999999


Q ss_pred             CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc---------ch
Q 013578          320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK---------VL  389 (440)
Q Consensus       320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~---------~~  389 (440)
                      |+.|++||+++...+..              ..++...+  ..+++++.+|++|+ |+.|++||+.++.         .+
T Consensus       197 dg~i~i~d~~~~~~~~~--------------~~~~~~~v--~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  260 (293)
T d1p22a2         197 DNTIRLWDIECGACLRV--------------LEGHEELV--RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL  260 (293)
T ss_dssp             TSCEEEEETTTCCEEEE--------------ECCCSSCE--EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEE
T ss_pred             CCEEEEEecccceeeee--------------ecccceee--eeccccceEEEEEcCCCEEEEEECCCCccccccCCceee
Confidence            99999999986644321              11222223  34567788888765 9999999986543         23


Q ss_pred             hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          390 DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       390 ~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      ..+ .+|.+.|++++|++          .+|+|||.||+|+|||
T Consensus       261 ~~~-~~H~~~V~~v~~d~----------~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         261 RTL-VEHSGRVFRLQFDE----------FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEE-CCCSSCCCCEEECS----------SCEEECCSSSEEEEEC
T ss_pred             EEe-cCCCCCEEEEEEcC----------CEEEEEecCCEEEEeC
Confidence            344 58999999999965          4799999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.5e-30  Score=225.07  Aligned_cols=263  Identities=21%  Similarity=0.330  Sum_probs=210.2

Q ss_pred             CCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578           66 HSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP  141 (440)
Q Consensus        66 ~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v  141 (440)
                      ...++++.|+.+++|..    .+.++.+|.+.|.+++|+|++.++++++.++.+.+|+.....     .......+...+
T Consensus        30 ~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  104 (317)
T d1vyhc1          30 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNV  104 (317)
T ss_dssp             SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-----EEECCCCCSSCE
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccc-----cccccccccccc
Confidence            44677888999999964    467899999999999999999999999999999999987654     344556677889


Q ss_pred             ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578          142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI  221 (440)
Q Consensus       142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (440)
                      .++.|++++..+++++.+   ..+.+|+.........                ...+...       ...+.+++++. +
T Consensus       105 ~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~----------------~~~~~~~-------~~~~~~~~~~~-~  157 (317)
T d1vyhc1         105 SSVSIMPNGDHIVSASRD---KTIKMWEVQTGYCVKT----------------FTGHREW-------VRMVRPNQDGT-L  157 (317)
T ss_dssp             EEEEECSSSSEEEEEETT---SEEEEEETTTCCEEEE----------------EECCSSC-------EEEEEECTTSS-E
T ss_pred             eeeeccCCCceEEeeccC---cceeEeecccceeeeE----------------EccCCCc-------ceeeecccCCC-E
Confidence            999999999999998877   4556665443211000                0011111       12233467777 8


Q ss_pred             EEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCC--------------------CeEEEEecCCCEEEEEeEec
Q 013578          222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNG--------------------RFLAAAAFTADVKVWEIVYS  281 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--------------------~~l~~~~~dg~i~i~d~~~~  281 (440)
                      +++++.|+.|++|+..+++....+..+...+.++.++|++                    .++++++.|+.|++||++.+
T Consensus       158 l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  237 (317)
T d1vyhc1         158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  237 (317)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             EEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC
Confidence            9999999999999999999999998888889998888754                    46899999999999998765


Q ss_pred             CCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE
Q 013578          282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL  361 (440)
Q Consensus       282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  361 (440)
                      .        .+..+.+|...|.+++|+|++++|++++.||.|++||+++++.+.              ...+|...|+++
T Consensus       238 ~--------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------~~~~h~~~V~~~  295 (317)
T d1vyhc1         238 M--------CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK--------------TLNAHEHFVTSL  295 (317)
T ss_dssp             E--------EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE--------------EEECCSSCEEEE
T ss_pred             c--------EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEE--------------EEcCCCCCEEEE
Confidence            4        677888999999999999999999999999999999998654321              123456679999


Q ss_pred             EeCCCCCEEEEec-CCEEEEEE
Q 013578          362 SLSSDGKILAATH-GSTLQWLS  382 (440)
Q Consensus       362 ~~s~~g~~l~~~~-~~~i~i~d  382 (440)
                      +|+|++++|++|+ |+.|++||
T Consensus       296 ~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         296 DFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EECSSSSCEEEEETTSEEEEEC
T ss_pred             EEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999865 89999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=4.7e-30  Score=224.45  Aligned_cols=271  Identities=13%  Similarity=0.141  Sum_probs=192.8

Q ss_pred             CCCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578           63 SKPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG  138 (440)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~  138 (440)
                      +.....++++.|+.+++|..    .+..+.+|...|.+++|+|+++++++|+.|+.+++|+........ ........|.
T Consensus        65 ~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~  143 (340)
T d1tbga_          65 TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV-RVSRELAGHT  143 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCC-CEEEEECCCS
T ss_pred             CCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccccc-ccceeccccc
Confidence            33445677888999999965    467788999999999999999999999999999999987654332 2223333443


Q ss_pred             CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578          139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG  218 (440)
Q Consensus       139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (440)
                      ..... .+...+..+.....+.   ....+.......                ..........       .......+.+
T Consensus       144 ~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------------~~~~~~~~~~-------~~~~~~~~~~  196 (340)
T d1tbga_         144 GYLSC-CRFLDDNQIVTSSGDT---TCALWDIETGQQ----------------TTTFTGHTGD-------VMSLSLAPDT  196 (340)
T ss_dssp             SCEEE-EEEEETTEEEEEETTT---EEEEEETTTTEE----------------EEEEECCSSC-------EEEEEECTTS
T ss_pred             ccccc-cccccccccccccccc---cccccccccccc----------------ccccccccee-------Eeeecccccc
Confidence            33333 3333444444444331   111111111000                0000000000       1111223444


Q ss_pred             CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578          219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH  298 (440)
Q Consensus       219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  298 (440)
                      . ++++++.|+.|++||+++++++..+..|...|.+++|+|++++|++|+.||.|++||++...      .........+
T Consensus       197 ~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~------~~~~~~~~~~  269 (340)
T d1tbga_         197 R-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ------ELMTYSHDNI  269 (340)
T ss_dssp             S-EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------EEEEECCTTC
T ss_pred             c-eeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc------cccccccccc
Confidence            4 88999999999999999999999999999999999999999999999999999999986543      0112233456


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCE
Q 013578          299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GST  377 (440)
Q Consensus       299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~  377 (440)
                      ...|.+++|+|++++|++|+.||.|++||+.++..+.              ...+|...|.+++|+|++++|++|+ ||.
T Consensus       270 ~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~--------------~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG--------------VLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             CSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEE--------------EECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             cCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEE--------------EEcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence            7789999999999999999999999999998664431              2235667799999999999999865 899


Q ss_pred             EEEEE
Q 013578          378 LQWLS  382 (440)
Q Consensus       378 i~i~d  382 (440)
                      |++||
T Consensus       336 v~iWd  340 (340)
T d1tbga_         336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=9.6e-30  Score=218.54  Aligned_cols=266  Identities=16%  Similarity=0.229  Sum_probs=189.1

Q ss_pred             CCCCCCCCCCcccCcc----ccccc-cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578           67 SHSHGDKDQNKRHHPL----DVNTL-KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP  141 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~----~~~~l-~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v  141 (440)
                      ..++++.|+.++.|..    +++.+ .+|.+.|++++|+|+|+ +++++.|+.+++|+............  ...+...+
T Consensus        26 ~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~--~~~~~~~~  102 (299)
T d1nr0a2          26 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAV--ANKLSSQP  102 (299)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCC--EEECSSCE
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCCccccccccc--cccccccc
Confidence            3567788888888864    34555 47999999999999997 55667899999999876543222111  12345678


Q ss_pred             ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578          142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI  221 (440)
Q Consensus       142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (440)
                      .+++|+++++.++.+..+    .+.+|+........                           .......+.++++++ +
T Consensus       103 ~~~~~s~~g~~~~~~~~~----~i~~~~~~~~~~~~---------------------------~~~~~~~~~~s~~~~-~  150 (299)
T d1nr0a2         103 LGLAVSADGDIAVAACYK----HIAIYSHGKLTEVP---------------------------ISYNSSCVALSNDKQ-F  150 (299)
T ss_dssp             EEEEECTTSSCEEEEESS----EEEEEETTEEEEEE---------------------------CSSCEEEEEECTTSC-E
T ss_pred             cccccccccccccccccc----cccccccccccccc---------------------------ccccccccccccccc-c
Confidence            899999999988776643    45666543321100                           000112233467777 8


Q ss_pred             EEEeeCCceEEEEeCCCCceee-eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          222 IASCSEGTDISIWHGKTGKLLG-NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      +++++.|+.|++||+++++... ....|...|.+++|+|++++|++++.|+.|++||+....     .......+.+|..
T Consensus       151 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----~~~~~~~~~~h~~  225 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF-----ELAHTNSWTFHTA  225 (299)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT-----EESCCCCCCCCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccc
Confidence            9999999999999998776543 334578889999999999999999999999999986543     1223455678999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQ  379 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~  379 (440)
                      .|++++|+|++.+|++|+.||.|++||+++.....       .    ......+...+..+.| +++++|++ +.|+.|+
T Consensus       226 ~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~-------~----~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~  293 (299)
T d1nr0a2         226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP-------I----IIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIK  293 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC-------E----EETTSSTTSCEEEEEE-EETTEEEEEETTSCEE
T ss_pred             ccccccccccccceEEEcCCCEEEEEECCCCCcce-------E----EEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEE
Confidence            99999999999999999999999999998653211       0    1111223334566655 45566665 4599999


Q ss_pred             EEEcC
Q 013578          380 WLSVE  384 (440)
Q Consensus       380 i~d~~  384 (440)
                      +||+.
T Consensus       294 iWdl~  298 (299)
T d1nr0a2         294 FWNVP  298 (299)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99974

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=2.1e-29  Score=222.22  Aligned_cols=289  Identities=15%  Similarity=0.056  Sum_probs=202.3

Q ss_pred             eEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccc
Q 013578           95 TGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKA  173 (440)
Q Consensus        95 ~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  173 (440)
                      ..-.||| ||+++|+++ +|.|.+||+..+.     ..+  ..|...|.+++|+|||+.|++++.+. +..+++|+....
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~-----~~~--~~~~~~v~~~~~spDg~~l~~~~~~~-g~~v~v~d~~~~   76 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-----VLK--VPEPLRIRYVRRGGDTKVAFIHGTRE-GDFLGIYDYRTG   76 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSB-----EEE--CSCCSCEEEEEECSSSEEEEEEEETT-EEEEEEEETTTC
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCc-----EEE--ccCCCCEEEEEECCCCCEEEEEEcCC-CCEEEEEECCCC
Confidence            3467999 999999987 4689999997654     222  36788999999999999999887663 345778876553


Q ss_pred             cccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCccc
Q 013578          174 ISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNN  253 (440)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  253 (440)
                      ....                 ...+...       ...+.++|+++ ++++++.++.+++|++.+++....+..+...+.
T Consensus        77 ~~~~-----------------~~~~~~~-------v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (360)
T d1k32a3          77 KAEK-----------------FEENLGN-------VFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMIT  131 (360)
T ss_dssp             CEEE-----------------CCCCCCS-------EEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             cEEE-----------------eeCCCce-------EEeeeeccccc-ccceeccccccccccccccceeeeeeccccccc
Confidence            2110                 0011111       12334589998 899999999999999999999888988888999


Q ss_pred             EEEecCCCCeEEEEe----------cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578          254 MAAISPNGRFLAAAA----------FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL  323 (440)
Q Consensus       254 ~~~~s~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i  323 (440)
                      +++|+|+|++|+.+.          .++.+++||+..++         ...+..|...+.+++|+|+|++|++++.|+.+
T Consensus       132 ~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~---------~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~  202 (360)
T d1k32a3         132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---------IFAATTENSHDYAPAFDADSKNLYYLSYRSLD  202 (360)
T ss_dssp             CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---------EEECSCSSSBEEEEEECTTSCEEEEEESCCCC
T ss_pred             chhhccceeeeeeeccccccceeeccccceeeeccccCc---------eeeecccccccccccccCCCCEEEEEeCCCce
Confidence            999999999998654          34458899985543         33445577788999999999999999999999


Q ss_pred             EEEecCccccccCCCCcc----------ccc-------------------cccccCCCCCeeeeeeEEeCCCCC------
Q 013578          324 RVWNINVRYHLDEDPKTL----------KVL-------------------PIPLLDSNGATLQYDRLSLSSDGK------  368 (440)
Q Consensus       324 ~iwd~~~~~~~~~~~~~~----------~~~-------------------~~~~~~~~~~~~~v~~~~~s~~g~------  368 (440)
                      ++||..............          ...                   ................+...+++.      
T Consensus       203 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (360)
T d1k32a3         203 PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP  282 (360)
T ss_dssp             CEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECC
T ss_pred             EcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEE
Confidence            999976432211100000          000                   000000000111122333333332      


Q ss_pred             -------EEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          369 -------ILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       369 -------~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                             +++.+. ++.+++||+.+++..     .|.+.|.+++|+||+        ++|++++.||.|++|+++.++.
T Consensus       283 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~v~~~~~SpDG--------~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         283 VHGEFAAYYQGAPEKGVLLKYDVKTRKVT-----EVKNNLTDLRLSADR--------KTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             CCCSHHHHHHCCCCCEEEEEEETTTCCEE-----EEEEEEEEEEECTTS--------CEEEEEETTSCEEEEESSCTTS
T ss_pred             ecCCCeeEEEecCCCCEEEEEECCCCeEE-----EecCCcCEEEECCCC--------CEEEEEECCCeEEEEECCCCCc
Confidence                   233333 678999999887642     466779999999999        8999999999999999998865

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.3e-29  Score=221.37  Aligned_cols=209  Identities=14%  Similarity=0.173  Sum_probs=146.7

Q ss_pred             EEEEeeCCceEEEEeCCCCc------------------eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecC
Q 013578          221 IIASCSEGTDISIWHGKTGK------------------LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK  282 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  282 (440)
                      ++++++.|+++++|++....                  .......+...+.+++|+|++ +|++|+.||.|++||+..++
T Consensus       138 ~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~  216 (393)
T d1sq9a_         138 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR  216 (393)
T ss_dssp             EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred             EEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc
Confidence            78899999999999974321                  011112344568899999997 88999999999999986543


Q ss_pred             CCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc---EEEEecCccccccCCCCccccccccccCCCCCeeeee
Q 013578          283 DGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT---LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD  359 (440)
Q Consensus       283 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  359 (440)
                        ..........+.+|..+|.+++|+|+|++|++|+.|++   |++||++++..+........ .........+|...|+
T Consensus       217 --~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~-~~~~~~~~~gH~~~V~  293 (393)
T d1sq9a_         217 --PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH-SSQASLGEFAHSSWVM  293 (393)
T ss_dssp             --EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------CCBSBSSCEE
T ss_pred             --cccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccc-cccceeeeecccCcee
Confidence              11223344567789999999999999999999999875   89999998765432111111 1112233447888899


Q ss_pred             eEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCe---------------------EEEEecCCCCC--CCCC
Q 013578          360 RLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEI---------------------TCMAWAPKTIP--MGNQ  415 (440)
Q Consensus       360 ~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v---------------------~~v~~~~~~~~--~~~~  415 (440)
                      +++|+|++++|++|+ |+.|++||+++++++..+ .+|.+.|                     .++.|.+.+..  +...
T Consensus       294 ~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l-~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (393)
T d1sq9a_         294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL-NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGAD  372 (393)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCT
T ss_pred             eeccCCCCCeeEEECCCCEEEEEECCCCCEEEEE-CCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccC
Confidence            999999999999876 899999999999999888 5786544                     34444443211  0111


Q ss_pred             cceEEEEeeCCCeEEEEeC
Q 013578          416 QVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       416 ~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ....|++++.|+.||+|+-
T Consensus       373 ~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         373 LNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             TSCEEEEEETTTEEEEEEE
T ss_pred             CCCEEEEEEcCCeEEEEeC
Confidence            2246889999999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.3e-28  Score=204.72  Aligned_cols=252  Identities=11%  Similarity=0.182  Sum_probs=181.7

Q ss_pred             CCCCCCCCCcccCccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEc
Q 013578           68 HSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFA  147 (440)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  147 (440)
                      ..+++.|+.++.|.... ..++|...|.++++++++ .+++++.|+++++|++....            ....+..++++
T Consensus        24 l~sgs~Dg~v~~Wd~~~-~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~------------~~~~~~~~~~~   89 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSS-MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE------------FGSQPKVASAN   89 (287)
T ss_dssp             TEEEETTSCEEETTTTE-EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE------------CSSCEEEEEEC
T ss_pred             EEEEeCCCeEEEEECCC-CCCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc------------cccceeeeeec
Confidence            57889999999998653 467899999999999754 68999999999999976421            12456778888


Q ss_pred             cCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC
Q 013578          148 DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE  227 (440)
Q Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  227 (440)
                      +++..++++..+    .+.+++.........                        .  ........+.+++..+++++..
T Consensus        90 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~------------------------~--~~~~~~~~~~~~~~~~~v~~~~  139 (287)
T d1pgua2          90 NDGFTAVLTNDD----DLLILQSFTGDIIKS------------------------V--RLNSPGSAVSLSQNYVAVGLEE  139 (287)
T ss_dssp             SSSEEEEEETTS----EEEEEETTTCCEEEE------------------------E--ECSSCEEEEEECSSEEEEEETT
T ss_pred             cCCceEEEeecc----cceeeeccceeeeee------------------------c--cccceeeeeeccCcceeeeccc
Confidence            888777766543    333443322211000                        0  0011112234566645555555


Q ss_pred             CceEEEEeCCCCceeeeee-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEE
Q 013578          228 GTDISIWHGKTGKLLGNVD-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC  306 (440)
Q Consensus       228 d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  306 (440)
                      ++.|++|++...+....+. .+...+++++|+|++.+|++|+.||.|++||+....       .....+.+|...|.+++
T Consensus       140 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-------~~~~~~~~h~~~v~~~~  212 (287)
T d1pgua2         140 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-------VKTSRWAFRTSKINAIS  212 (287)
T ss_dssp             TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------EEECCSCCCSSCEEEEE
T ss_pred             cceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc-------cccccccccccccceee
Confidence            5689999988666555443 466789999999999999999999999999986543       12334678999999999


Q ss_pred             EcCC----------CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCC
Q 013578          307 FAPN----------SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS  376 (440)
Q Consensus       307 ~~p~----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  376 (440)
                      |+|.          +.+|++|+.|++|++||++.....             .....+|...|++++|+|++.++.+|.|+
T Consensus       213 ~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~-------------~~~~~~h~~~V~~v~~~~~~~l~s~g~D~  279 (287)
T d1pgua2         213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI-------------IKALNAHKDGVNNLLWETPSTLVSSGADA  279 (287)
T ss_dssp             ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC-------------EEETTSSTTCEEEEEEEETTEEEEEETTS
T ss_pred             ecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE-------------EEEeCCCCCCeEEEEECCCCEEEEEECCC
Confidence            9875          468999999999999999753211             12234667779999999999877778899


Q ss_pred             EEEEEEc
Q 013578          377 TLQWLSV  383 (440)
Q Consensus       377 ~i~i~d~  383 (440)
                      .|++|++
T Consensus       280 ~v~iW~i  286 (287)
T d1pgua2         280 CIKRWNV  286 (287)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.5e-27  Score=209.44  Aligned_cols=281  Identities=15%  Similarity=0.171  Sum_probs=186.8

Q ss_pred             CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578           67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT  142 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~  142 (440)
                      ..++++.|+.+++|+.    ++++|++|.++|++++|+|+ .+|++|+.||+|++|++......   .......+.....
T Consensus        25 ~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~---~~~~~~~~~~~~~  100 (355)
T d1nexb2          25 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCT---HVFEGHNSTVRCL  100 (355)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEE---EEECCCSSCEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccc---ccccccccccccc
Confidence            4577888999999965    47889999999999999986 58999999999999999875422   1111222223345


Q ss_pred             eEEEccCCCeEEEEeecCCcceEEeecccccccccccccc---------------------------------------C
Q 013578          143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ---------------------------------------S  183 (440)
Q Consensus       143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~  183 (440)
                      ...+.+++..+++++.+   ..+.+|+.............                                       .
T Consensus       101 ~~~~~~~~~~~~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  177 (355)
T d1nexb2         101 DIVEYKNIKYIVTGSRD---NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG  177 (355)
T ss_dssp             EEEEETTEEEEEEEETT---SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             ccccccccceeeeecCC---CcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeee
Confidence            56778888889888877   45666655432211100000                                       0


Q ss_pred             CCCCCceeecccccccceeEEE-eecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC
Q 013578          184 KLPGPEIKWEHHKVHDKRAILT-LFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR  262 (440)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  262 (440)
                      ........|+............ ........+++++. .+++++.|+.|++||.+++..+..+..|...|.+++++  ++
T Consensus       178 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~  254 (355)
T d1nexb2         178 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DK  254 (355)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SS
T ss_pred             cccceeeeeecccccceeeeeccccccccccccccce-eeecccccceEEeeeccccccccccccccccccccccc--cc
Confidence            0001122233222211111110 11122344567777 88999999999999999999999999999999999886  47


Q ss_pred             eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEE-EcCCCCEEEEEeCCCcEEEEecCccccccCCCCcc
Q 013578          263 FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC-FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTL  341 (440)
Q Consensus       263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  341 (440)
                      +|++|+.||.|++||++...          ..+..|...+.++. +++++.+|++| .|+.|++||+++++.+..     
T Consensus       255 ~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~-----  318 (355)
T d1nexb2         255 FLVSAAADGSIRGWDANDYS----------RKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHA-----  318 (355)
T ss_dssp             EEEEECTTSEEEEEETTTCC----------EEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCS-----
T ss_pred             eeeeeecccccccccccccc----------eecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEE-----
Confidence            99999999999999985432          33455677776654 46666666555 589999999997755321     


Q ss_pred             ccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEE
Q 013578          342 KVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLS  382 (440)
Q Consensus       342 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d  382 (440)
                              ...+|...|.+++|+|+. ++++ +.||.++||.
T Consensus       319 --------~~~~~~~~V~~v~~~~~~-~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         319 --------NILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEI  351 (355)
T ss_dssp             --------CTTTTCSEEEEEEEETTE-EEEEEESSSCEEEEE
T ss_pred             --------EecCCCCCEEEEEEcCCe-EEEEEECCCcEEEEE
Confidence                    123456679999999875 4554 4588765543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-25  Score=194.94  Aligned_cols=287  Identities=18%  Similarity=0.238  Sum_probs=184.2

Q ss_pred             CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578           67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT  142 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~  142 (440)
                      ..++++.|+.+++|..    +++++.+|.+.|.+++|+|+  +|++|+.|+++++|+......     ......+...+.
T Consensus        29 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~-----~~~~~~~~~~~~  101 (342)
T d2ovrb2          29 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGEC-----IHTLYGHTSTVR  101 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEE-----EEEECCCSSCEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccc-----eecccccceeEe
Confidence            3577888999999865    57789999999999999874  999999999999999876532     112222222222


Q ss_pred             eEEEccCCCeEEEEeecCCcceEEeeccccccccccc----------------cccCCCCCCceeecccccccceeEEEe
Q 013578          143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEG----------------KQQSKLPGPEIKWEHHKVHDKRAILTL  206 (440)
Q Consensus       143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (440)
                      ...  .....+..+..+   ..+.+++..........                ............|+.............
T Consensus       102 ~~~--~~~~~~~~~~~d---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  176 (342)
T d2ovrb2         102 CMH--LHEKRVVSGSRD---ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH  176 (342)
T ss_dssp             EEE--EETTEEEEEETT---SEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCC
T ss_pred             eee--cccccccccccc---eeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCc
Confidence            222  233344444443   22333332221110000                000001112233333222111111111


Q ss_pred             ecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce
Q 013578          207 FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV  286 (440)
Q Consensus       207 ~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  286 (440)
                       ........+++. ++++++.|+.|++||++.++.+..+..|...+.++.++  +++|++|+.||.|++||+...+    
T Consensus       177 -~~~~~~~~~~~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~----  248 (342)
T d2ovrb2         177 -TNRVYSLQFDGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQ----  248 (342)
T ss_dssp             -SSCEEEEEECSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC----
T ss_pred             -ccccccccCCCC-EEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccccc----
Confidence             112222344566 89999999999999999999999999998888777665  5699999999999999986543    


Q ss_pred             eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC
Q 013578          287 KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD  366 (440)
Q Consensus       287 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  366 (440)
                       ..........|...+.++.++  ++++++++.||+|++||+++++.+..       +  ......++...|.+++|+|+
T Consensus       249 -~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~-------~--~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         249 -CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRN-------L--VTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             -EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE-------E--EECTTGGGTCEEEEEEECSS
T ss_pred             -ccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEE-------E--ecccCCCCCCCEEEEEECCC
Confidence             111222233466777777775  56999999999999999997755422       1  11223355667999999999


Q ss_pred             CCEEEEec-CC----EEEEEEcCC
Q 013578          367 GKILAATH-GS----TLQWLSVET  385 (440)
Q Consensus       367 g~~l~~~~-~~----~i~i~d~~~  385 (440)
                      +.+|++|+ ||    .|++||+..
T Consensus       317 ~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999976 55    599999863

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.3e-25  Score=188.16  Aligned_cols=262  Identities=16%  Similarity=0.241  Sum_probs=180.9

Q ss_pred             CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578           67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT  142 (440)
Q Consensus        67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~  142 (440)
                      ..++++.|+.+++|+.    ++++|++|.+.|++++|  ++++|+||+.||.|++|++..+...     ....  .....
T Consensus        27 ~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~-----~~~~--~~~~~   97 (293)
T d1p22a2          27 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML-----NTLI--HHCEA   97 (293)
T ss_dssp             EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE-----EEEC--CCCSC
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccc-----cccc--ccccc
Confidence            4578889999999965    57789999999999988  6789999999999999999876532     1111  13334


Q ss_pred             eEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578          143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII  222 (440)
Q Consensus       143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  222 (440)
                      ...+.+....++++..+   ..+.+|+........             .......+...+...         ..... .+
T Consensus        98 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~---------~~~~~-~~  151 (293)
T d1p22a2          98 VLHLRFNNGMMVTCSKD---RSIAVWDMASPTDIT-------------LRRVLVGHRAAVNVV---------DFDDK-YI  151 (293)
T ss_dssp             EEEEECCTTEEEEEETT---SCEEEEECSSSSCCE-------------EEEEECCCSSCEEEE---------EEETT-EE
T ss_pred             cccccccccceeecccc---cceeEeecccccccc-------------ccccccccccccccc---------eeccc-cc
Confidence            45566666777777665   334444433221000             000001111111110         11222 67


Q ss_pred             EEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce
Q 013578          223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV  302 (440)
Q Consensus       223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v  302 (440)
                      ++++.|+.|++||+.+++.+..+..+...+..+.+  ++..+++++.||.|++||++...        .+....+|...|
T Consensus       152 ~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~v  221 (293)
T d1p22a2         152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA--------CLRVLEGHEELV  221 (293)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCE
T ss_pred             ccccCCCceeeecCCCCcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEecccce--------eeeeecccceee
Confidence            88999999999999999999999888877766665  46789999999999999987654        566777888887


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEE
Q 013578          303 TWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWL  381 (440)
Q Consensus       303 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~  381 (440)
                      ..+  ++++.+|++++.||.|++||+............     .......+|...|.+++|+  +.+|++++ |+.|++|
T Consensus       222 ~~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         222 RCI--RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT-----LCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW  292 (293)
T ss_dssp             EEE--ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTT-----TEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEE
T ss_pred             eec--cccceEEEEEcCCCEEEEEECCCCccccccCCc-----eeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEe
Confidence            764  557889999999999999999765433221111     1122334667778899984  56777765 8999999


Q ss_pred             E
Q 013578          382 S  382 (440)
Q Consensus       382 d  382 (440)
                      |
T Consensus       293 D  293 (293)
T d1p22a2         293 D  293 (293)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=7.5e-25  Score=197.17  Aligned_cols=332  Identities=8%  Similarity=-0.027  Sum_probs=205.0

Q ss_pred             CCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578           69 SHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV  144 (440)
Q Consensus        69 ~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v  144 (440)
                      .....++.+++|+.    .+.++..|. .+..++|||||++|++++.|++|++||+.+++......+.....|.+.+.++
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~  114 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK  114 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence            45567788888865    467787774 6999999999999999999999999999988755433344444455566778


Q ss_pred             EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578          145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS  224 (440)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  224 (440)
                      +|+|||+++++++...  ..+.+|+.................      .      ...+........+..++++..++++
T Consensus       115 ~~spDG~~l~v~~~~~--~~v~i~d~~~~~~~~~~~~~~~~~------~------~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         115 FKGYEDRYTIAGAYWP--PQFAIMDGETLEPKQIVSTRGMTV------D------TQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             STTCTTTEEEEEEEES--SEEEEEETTTCCEEEEEECCEECS------S------SCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             eecCCCCEEEEeecCC--CeEEEEcCCccceeEEeeccCCCc------c------ceeecCCCceeEEEECCCCCEEEEe
Confidence            8899999988777552  455666554432111000000000      0      0000000011122335666655666


Q ss_pred             eeCCceEEEEeCCCCceee-eeeCCCCcccEEEecCCCCeEEEEecC-CCEEEEEeEecCCCceeeeeeeeee--ecccc
Q 013578          225 CSEGTDISIWHGKTGKLLG-NVDTNQLKNNMAAISPNGRFLAAAAFT-ADVKVWEIVYSKDGLVKAVTSVMQL--KGHKS  300 (440)
Q Consensus       225 ~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~--~~h~~  300 (440)
                      ....+.+.+++......+. ....+...+..+.++|++++++++..+ ..+.+++....+        .+...  ..+..
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  252 (426)
T d1hzua2         181 VKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR--------LSALVDVGKTPH  252 (426)
T ss_dssp             ETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE--------EEEEEECSSCCC
T ss_pred             cCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc--------EEEEeccCCccc
Confidence            6666777777766554322 222445667889999999998888754 457788765443        22211  11222


Q ss_pred             ceEEEEEcCCCC-EE--EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe----
Q 013578          301 AVTWLCFAPNSE-QI--ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT----  373 (440)
Q Consensus       301 ~v~~~~~~p~~~-~l--~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~----  373 (440)
                      ......+.+.+. .+  ++.+.|+.+.+|+.............       .....+|...+..++|+||+++|++.    
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~-------~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~  325 (426)
T d1hzua2         253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK-------VAELQGQGGGSLFIKTHPKSSHLYVDTTFN  325 (426)
T ss_dssp             CSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSE-------EEEEECSSSCCCCEECCTTCSEEEECCTTC
T ss_pred             ccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceE-------eEEEecCCCceeEEEcCCCCceEEEeecCC
Confidence            223333333332 22  23345788888887644221111111       12223556668889999999999962    


Q ss_pred             ----cCCEEEEEEcCCccchhhhh--------ccccCCeEEEEecCCCCCCCCCcceEE-EEe----eCCCeEEEEeCCC
Q 013578          374 ----HGSTLQWLSVETGKVLDTAE--------KAHEGEITCMAWAPKTIPMGNQQVSVL-ATS----SVDKKVKLWLAPS  436 (440)
Q Consensus       374 ----~~~~i~i~d~~~~~~~~~~~--------~~h~~~v~~v~~~~~~~~~~~~~~~~l-~t~----~~Dg~i~vw~~~~  436 (440)
                          .++.|++||+.+++...++.        ..|...|.+++|+|||        +++ +++    +.||.|+|||..+
T Consensus       326 ~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDG--------k~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         326 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG--------DEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSS--------SEEEEEECCCTTSCCEEEEEETTT
T ss_pred             CCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCC--------CEEEEEEecCCCCCCeEEEEECCC
Confidence                26899999999988665431        2456679999999998        555 443    4689999999988


Q ss_pred             CC
Q 013578          437 LE  438 (440)
Q Consensus       437 ~~  438 (440)
                      ++
T Consensus       398 ~k  399 (426)
T d1hzua2         398 LK  399 (426)
T ss_dssp             TE
T ss_pred             Ce
Confidence            75

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.3e-23  Score=182.96  Aligned_cols=264  Identities=11%  Similarity=0.097  Sum_probs=177.4

Q ss_pred             eeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeec
Q 013578          129 KFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFG  208 (440)
Q Consensus       129 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (440)
                      +.+....+|...|++|+|+|++++|++++.|   ..+++|+........             .......|...       
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~D---g~v~iwd~~~~~~~~-------------~~~~~~~h~~~-------   58 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWD---GSLTVYKFDIQAKNV-------------DLLQSLRYKHP-------   58 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETT---SEEEEEEEETTTTEE-------------EEEEEEECSSC-------
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECC---CeEEEEEccCCCcce-------------EEEEecCCCCC-------
Confidence            3566777899999999999999999999987   467777654321100             00000111111       


Q ss_pred             ccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcc-cEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee
Q 013578          209 ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK  287 (440)
Q Consensus       209 ~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  287 (440)
                      ..++.+++++..++++|+.|+.|++|++..+........+.... ....+.++...+++++.++.+++||++....... 
T Consensus        59 V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~-  137 (342)
T d1yfqa_          59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI-  137 (342)
T ss_dssp             EEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE-
T ss_pred             EEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeecccccccee-
Confidence            12233466666689999999999999999887766665544433 4456677889999999999999999876553221 


Q ss_pred             eeeeeeeeecc--ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe-C
Q 013578          288 AVTSVMQLKGH--KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL-S  364 (440)
Q Consensus       288 ~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s  364 (440)
                         .......+  ......+.+.+++..+++++.|+.|++||++.........          . .......+....+ .
T Consensus       138 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~  203 (342)
T d1yfqa_         138 ---AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI----------E-ESGLKYQIRDVALLP  203 (342)
T ss_dssp             ---EEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEE----------E-ECSCSSCEEEEEECS
T ss_pred             ---eecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceee----------e-ecccccceeeeEeec
Confidence               12222222  2334566777888999999999999999998654321100          0 0111122333444 4


Q ss_pred             CCCCEEEEe-cCCEEEEEEcCCccchhhh--------------hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeE
Q 013578          365 SDGKILAAT-HGSTLQWLSVETGKVLDTA--------------EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKV  429 (440)
Q Consensus       365 ~~g~~l~~~-~~~~i~i~d~~~~~~~~~~--------------~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i  429 (440)
                      .++..++++ .+|.+.+|+..........              ...|...|++++|+|++        .+|+||+.||.|
T Consensus       204 ~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~--------~~lasg~~Dg~v  275 (342)
T d1yfqa_         204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH--------KFLYTAGSDGII  275 (342)
T ss_dssp             GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT--------CCEEEEETTSCE
T ss_pred             CCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc--------cEEEEECCCCEE
Confidence            556666665 4899999988654322211              13566789999999998        899999999999


Q ss_pred             EEEeCCCCC
Q 013578          430 KLWLAPSLE  438 (440)
Q Consensus       430 ~vw~~~~~~  438 (440)
                      ++||+.+++
T Consensus       276 ~vWD~~~~~  284 (342)
T d1yfqa_         276 SCWNLQTRK  284 (342)
T ss_dssp             EEEETTTTE
T ss_pred             EEEECCCCc
Confidence            999998764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=2.2e-24  Score=193.61  Aligned_cols=319  Identities=10%  Similarity=-0.025  Sum_probs=194.5

Q ss_pred             CCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578           69 SHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV  144 (440)
Q Consensus        69 ~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v  144 (440)
                      .+...++.+.+|+.    .+..+..| ..+..++|||||++|++++.||+|++||+.+++......+.....+.+.+.+.
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~  114 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK  114 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEec
Confidence            45566777777754    46677766 46999999999999999999999999999887654433444333444556667


Q ss_pred             EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578          145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS  224 (440)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  224 (440)
                      .|+|||+++++.+..  ...+.+|+.................. ..           ..........+.++++|..++++
T Consensus       115 ~~SpDG~~l~vs~~~--~~~v~i~d~~t~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~v~~s~dg~~~~vs  180 (432)
T d1qksa2         115 MEGWEDKYAIAGAYW--PPQYVIMDGETLEPKKIQSTRGMTYD-EQ-----------EYHPEPRVAAILASHYRPEFIVN  180 (432)
T ss_dssp             STTCTTTEEEEEEEE--TTEEEEEETTTCCEEEEEECCEECTT-TC-----------CEESCCCEEEEEECSSSSEEEEE
T ss_pred             ccCCCCCEEEEEcCC--CCeEEEEeCccccceeeeccCCcccc-ce-----------eccCCCceeEEEECCCCCEEEEE
Confidence            788999998766554  35566676554322111110000000 00           00000111223458899878888


Q ss_pred             eeCCceEEEEeCCCCceeeeee-CCCCcccEEEecCCCCeEEEEecCC-CEEEEEeEecCCCceeeeeeeeeeeccc---
Q 013578          225 CSEGTDISIWHGKTGKLLGNVD-TNQLKNNMAAISPNGRFLAAAAFTA-DVKVWEIVYSKDGLVKAVTSVMQLKGHK---  299 (440)
Q Consensus       225 ~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~h~---  299 (440)
                      ...++.|.+||..+++...... .....+..++|+|+|+++++++.++ .+.++|......   ...........|.   
T Consensus       181 ~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~---~~~~~~g~~~~~~~~~  257 (432)
T d1qksa2         181 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL---VAIEDTGGQTPHPGRG  257 (432)
T ss_dssp             ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE---EEEEECSSSSBCCTTC
T ss_pred             EccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceE---EEEeccCccccccCcc
Confidence            8899999999998877554332 2234567899999999988887654 567777532210   0000000001122   


Q ss_pred             ------------------------------------cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccc
Q 013578          300 ------------------------------------SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKV  343 (440)
Q Consensus       300 ------------------------------------~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  343 (440)
                                                          ..|....++|++..+++++.+.+.++|+..+.            
T Consensus       258 ~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~------------  325 (432)
T d1qksa2         258 ANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL------------  325 (432)
T ss_dssp             EEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT------------
T ss_pred             cceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccC------------
Confidence                                                23344444444444444444444444443211            


Q ss_pred             ccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEE
Q 013578          344 LPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT  422 (440)
Q Consensus       344 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t  422 (440)
                              ..+......+++ ||++.+++++ |+.+++|++.++..+    ..|...|.+++|+|||        ++|+.
T Consensus       326 --------~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l----~~~~~~v~~~~fS~DG--------~~v~~  384 (432)
T d1qksa2         326 --------NPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI----TEGQPRVVQGEFNKDG--------TEVWF  384 (432)
T ss_dssp             --------CSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC----CSSCCEEEEEEECTTS--------SEEEE
T ss_pred             --------CCCCCeeeEEEE-EechhhcccccCCceEeccccccccc----CCCCCcEEEeEECCCC--------CEEEE
Confidence                    111112234554 8888888865 789999988665433    2477789999999998        66644


Q ss_pred             ee-----CCCeEEEEeCCCCC
Q 013578          423 SS-----VDKKVKLWLAPSLE  438 (440)
Q Consensus       423 ~~-----~Dg~i~vw~~~~~~  438 (440)
                      +.     .||.|+|||..+++
T Consensus       385 S~~~~~~~~g~i~i~D~~T~k  405 (432)
T d1qksa2         385 SVWNGKDQESALVVVDDKTLE  405 (432)
T ss_dssp             EEECCTTSCCEEEEEETTTTE
T ss_pred             EEecCCCCCCcEEEEECCCce
Confidence            42     47899999998875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=4.6e-22  Score=170.16  Aligned_cols=266  Identities=14%  Similarity=0.160  Sum_probs=188.2

Q ss_pred             EEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCC
Q 013578          106 LATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKL  185 (440)
Q Consensus       106 l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (440)
                      .++++.|++|.|||+.+++.     ... ...+..+..++|+|+|+++++++..  ...+.+|+.......         
T Consensus         5 yV~~~~~~~v~v~D~~t~~~-----~~~-i~~g~~p~~va~spdG~~l~v~~~~--~~~i~v~d~~t~~~~---------   67 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKV-----TAT-IPVGSNPMGAVISPDGTKVYVANAH--SNDVSIIDTATNNVI---------   67 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEE-----EEE-EECSSSEEEEEECTTSSEEEEEEGG--GTEEEEEETTTTEEE---------
T ss_pred             EEEECCCCEEEEEECCCCeE-----EEE-EECCCCceEEEEeCCCCEEEEEECC--CCEEEEEECCCCcee---------
Confidence            34677899999999988742     221 2233567899999999998766544  246677766543211         


Q ss_pred             CCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEE
Q 013578          186 PGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLA  265 (440)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  265 (440)
                                     ..+.....+..+.+++++...++++..++.+.+|+..+++....+..+. ...++.++|+++.++
T Consensus        68 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~  131 (301)
T d1l0qa2          68 ---------------ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLY  131 (301)
T ss_dssp             ---------------EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEE
T ss_pred             ---------------eeeeccccccccccccccccccccccccceeeecccccceeeeeccccc-cceEEEeecCCCeee
Confidence                           1111122233445578888788888899999999999998888887654 567899999999876


Q ss_pred             EEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC-CcEEEEecCccccccCCCCcccc
Q 013578          266 AAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD-GTLRVWNINVRYHLDEDPKTLKV  343 (440)
Q Consensus       266 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~  343 (440)
                      ... .++.+.+|+.....        ....+. +...+..++++|++..+++++.+ +.+.+|+........       .
T Consensus       132 ~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  195 (301)
T d1l0qa2         132 VTNNGDKTVSVINTVTKA--------VINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-------T  195 (301)
T ss_dssp             EEETTTTEEEEEETTTTE--------EEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-------E
T ss_pred             eeeccccceeeeeccccc--------eeeecc-cCCCceEEEeeccccceeeecccccccccccccceeeee-------c
Confidence            554 57778899875543        333443 34567899999999988887765 556677766432211       0


Q ss_pred             ccccccCCCCCeeeeeeEEeCCCCCEEEEec----CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceE
Q 013578          344 LPIPLLDSNGATLQYDRLSLSSDGKILAATH----GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSV  419 (440)
Q Consensus       344 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~  419 (440)
                      .        ........+++++++..++.+.    ++.|++||..+++.+..+.  +...+.+++|+||+        ++
T Consensus       196 ~--------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~va~spdg--------~~  257 (301)
T d1l0qa2         196 V--------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--VGPDPAGIAVTPDG--------KK  257 (301)
T ss_dssp             E--------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--CCSSEEEEEECTTS--------SE
T ss_pred             c--------cccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc--CCCCEEEEEEeCCC--------CE
Confidence            0        0112355789999999776532    4789999999999888774  45678999999998        65


Q ss_pred             E-EEeeCCCeEEEEeCCCCC
Q 013578          420 L-ATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       420 l-~t~~~Dg~i~vw~~~~~~  438 (440)
                      | ++++.|++|++||+.+++
T Consensus       258 l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         258 VYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTE
T ss_pred             EEEEECCCCeEEEEECCCCe
Confidence            5 688889999999998875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=1.4e-23  Score=184.42  Aligned_cols=252  Identities=12%  Similarity=0.010  Sum_probs=169.4

Q ss_pred             ccCcceeEEEEccCCCEEEEeeCCC--cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           89 GHGDSVTGLCFSSDGKCLATACADG--VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~s~dg--~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      +|...|.+++|+|||++|++++.|.  .|++||+.++.      ......|...+.+++|+|+++++++++.+   ..++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~------~~~~~~~~~~v~~~~~spdg~~l~~~~~~---~~~~  110 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK------AEKFEENLGNVFAMGVDRNGKFAVVANDR---FEIM  110 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC------EEECCCCCCSEEEEEECTTSSEEEEEETT---SEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc------EEEeeCCCceEEeeeecccccccceeccc---cccc
Confidence            7999999999999999999877553  79999998764      23455778899999999999999999877   4556


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEe-ecccccccCCCCCeEEEE---------eeCCceEEEEeC
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTL-FGASATYGTADGSTIIAS---------CSEGTDISIWHG  236 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s---------~~~d~~i~vwd~  236 (440)
                      +|+.......                        ...... .......++|+|+.++++         +..++.+++||+
T Consensus       111 ~~~~~~~~~~------------------------~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~  166 (360)
T d1k32a3         111 TVDLETGKPT------------------------VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM  166 (360)
T ss_dssp             EEETTTCCEE------------------------EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             ccccccccee------------------------eeeecccccccchhhccceeeeeeeccccccceeeccccceeeecc
Confidence            6655433111                        111111 112335568898844333         334567999999


Q ss_pred             CCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecC-----CCceee-----------------------
Q 013578          237 KTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK-----DGLVKA-----------------------  288 (440)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~-----------------------  288 (440)
                      .+++..... .+...+..++|+|+|++|++++.++.+.+|+.....     ......                       
T Consensus       167 ~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  245 (360)
T d1k32a3         167 EGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG  245 (360)
T ss_dssp             TTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCC
T ss_pred             ccCceeeec-ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCccccc
Confidence            987665443 456677889999999999999999999999842211     000000                       


Q ss_pred             -----------------eeeeeeeeccccceEEEEEcCCC---CEEEEEeCCCcEEEEecCccccccCCCCccccccccc
Q 013578          289 -----------------VTSVMQLKGHKSAVTWLCFAPNS---EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL  348 (440)
Q Consensus       289 -----------------~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  348 (440)
                                       ......+..+.+.+..+.+.+.+   .++++++.++.|++||+.+++..              
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------------  311 (360)
T d1k32a3         246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--------------  311 (360)
T ss_dssp             CCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE--------------
T ss_pred             ceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE--------------
Confidence                             00001111222223333333322   24566777889999999864321              


Q ss_pred             cCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhh
Q 013578          349 LDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTA  392 (440)
Q Consensus       349 ~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~  392 (440)
                          .+...|..++|+|||++|+++. ||.|++||+++++....+
T Consensus       312 ----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         312 ----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             ----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred             ----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence                1234578999999999999876 899999999999877665

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=4.9e-22  Score=172.76  Aligned_cols=242  Identities=14%  Similarity=0.149  Sum_probs=169.8

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccC
Q 013578          104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQS  183 (440)
Q Consensus       104 ~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (440)
                      +||++++.|++|+|||+.+.+..  ..+. ...+...+.+++|+|||++                               
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~--~~i~-~~~~~~~~~~i~~spDg~~-------------------------------   47 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVD--KVIT-IADAGPTPMVPMVAPGGRI-------------------------------   47 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE--EEEE-CTTCTTCCCCEEECTTSSE-------------------------------
T ss_pred             eEEEEEcCCCEEEEEECCCCeEE--EEEE-CCCCCCCccEEEECCCCCE-------------------------------
Confidence            58999999999999999876421  1111 1223456788888887764                               


Q ss_pred             CCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC-----CcccEEEec
Q 013578          184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ-----LKNNMAAIS  258 (440)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~s  258 (440)
                                                           ++++++.++.|.+||+.+++.+..+..+.     ..+..++|+
T Consensus        48 -------------------------------------l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s   90 (337)
T d1pbyb_          48 -------------------------------------AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS   90 (337)
T ss_dssp             -------------------------------------EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC
T ss_pred             -------------------------------------EEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEc
Confidence                                                 34566778899999999999988876543     335678999


Q ss_pred             CCCCeEEEEec------------CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 013578          259 PNGRFLAAAAF------------TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW  326 (440)
Q Consensus       259 ~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iw  326 (440)
                      |++++++++..            +..+.+||.....        ....+. +...+.+++|+|+|+++++++.  .+.+|
T Consensus        91 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~~~  159 (337)
T d1pbyb_          91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--------RRKAFE-APRQITMLAWARDGSKLYGLGR--DLHVM  159 (337)
T ss_dssp             TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------EEEEEE-CCSSCCCEEECTTSSCEEEESS--SEEEE
T ss_pred             CCCcEEEEeecCCcceeeeccccccceeeccccCCe--------EEEecc-ccCCceEEEEcCCCCEEEEEcC--Cccee
Confidence            99999988864            4566777764433        333343 4456889999999999999865  47789


Q ss_pred             ecCccccccCCCCc------------cccccc----------------------------------------cccCCCCC
Q 013578          327 NINVRYHLDEDPKT------------LKVLPI----------------------------------------PLLDSNGA  354 (440)
Q Consensus       327 d~~~~~~~~~~~~~------------~~~~~~----------------------------------------~~~~~~~~  354 (440)
                      |..++.........            ......                                        .......+
T Consensus       160 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (337)
T d1pbyb_         160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             eeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC
Confidence            98765433211000            000000                                        00000011


Q ss_pred             eeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          355 TLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       355 ~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      ...+..+++++++.+++++ ++.+++||+.+++.+..+.  +...+.+++|+||+        ++|++++.|++|+|||+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG--------~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         240 DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDG--------STVWLGGALGDLAAYDA  308 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTS--------CEEEEESBSSEEEEEET
T ss_pred             CcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc--CCCCEEEEEECCCC--------CEEEEEeCCCcEEEEEC
Confidence            1233456778888877655 5899999999999998874  67789999999999        89999999999999999


Q ss_pred             CCCC
Q 013578          435 PSLE  438 (440)
Q Consensus       435 ~~~~  438 (440)
                      .++|
T Consensus       309 ~t~~  312 (337)
T d1pbyb_         309 ETLE  312 (337)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            9876

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=2.1e-22  Score=175.88  Aligned_cols=250  Identities=12%  Similarity=0.056  Sum_probs=172.7

Q ss_pred             EEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccc
Q 013578           97 LCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIST  176 (440)
Q Consensus        97 l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  176 (440)
                      ++|+++++||++++.|++|.|||+.+++.    ......++...+.+++|+|||++                        
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~----~~t~~~~~~~~p~~l~~spDG~~------------------------   53 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV----YKSCVMPDKFGPGTAMMAPDNRT------------------------   53 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE----EEEEECSSCCSSCEEEECTTSSE------------------------
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE----EEEEEcCCCCCcceEEECCCCCE------------------------
Confidence            57899999999999999999999987642    12223455667889999888764                        


Q ss_pred             ccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCC------
Q 013578          177 NEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL------  250 (440)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~------  250 (440)
                                                                  +++++..++.|++||+.+++.+..+.....      
T Consensus        54 --------------------------------------------l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~   89 (346)
T d1jmxb_          54 --------------------------------------------AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGR   89 (346)
T ss_dssp             --------------------------------------------EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEE
T ss_pred             --------------------------------------------EEEEECCCCcEEEEeCccCeeeeeecccccccccCC
Confidence                                                        445666788899999999988877654322      


Q ss_pred             cccEEEecCCCCeEEEEe------------cCCCEEEEEeEecCCCceeeeeeeeeeec--cccceEEEEEcCCCCEEEE
Q 013578          251 KNNMAAISPNGRFLAAAA------------FTADVKVWEIVYSKDGLVKAVTSVMQLKG--HKSAVTWLCFAPNSEQIIT  316 (440)
Q Consensus       251 ~v~~~~~s~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s  316 (440)
                      .+..++|+|||+++++++            .++.+.+|+...+..        ...+..  ....+..+.+++++..+++
T Consensus        90 ~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          90 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--------AKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--------BCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee--------eeEEEeeeccCceEEEEecCCCEEEEe
Confidence            356789999999998875            356678887655431        111111  2234556667777765543


Q ss_pred             EeCCCcEEEEecCccccccCCCCc-----ccc-------c-------------------------------------cc-
Q 013578          317 ASKDGTLRVWNINVRYHLDEDPKT-----LKV-------L-------------------------------------PI-  346 (440)
Q Consensus       317 ~~~dg~i~iwd~~~~~~~~~~~~~-----~~~-------~-------------------------------------~~-  346 (440)
                      +   +.+.+|++.++.........     ...       .                                     .. 
T Consensus       162 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
T d1jmxb_         162 G---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK  238 (346)
T ss_dssp             S---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred             C---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC
Confidence            2   45788887665433211000     000       0                                     00 


Q ss_pred             ----cccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEE
Q 013578          347 ----PLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT  422 (440)
Q Consensus       347 ----~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t  422 (440)
                          .......+...+..+.+++++.+++...++.+.+||..+++.+..+.  +...+.+++|+||+        ++|++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~va~s~DG--------~~l~v  308 (346)
T d1jmxb_         239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKG--------DKLYL  308 (346)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSS--------SCEEE
T ss_pred             CCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc--CCCCEEEEEEcCCC--------CEEEE
Confidence                00000012223456788888888888888899999999999988775  55679999999999        89999


Q ss_pred             eeCCCeEEEEeCCCCCC
Q 013578          423 SSVDKKVKLWLAPSLES  439 (440)
Q Consensus       423 ~~~Dg~i~vw~~~~~~~  439 (440)
                      ++.|+.|+|||+.++|.
T Consensus       309 ~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         309 GGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             ESBSSEEEEEETTTTEE
T ss_pred             EeCCCcEEEEECccCCE
Confidence            99999999999998763

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=1.1e-19  Score=155.23  Aligned_cols=245  Identities=15%  Similarity=0.205  Sum_probs=169.8

Q ss_pred             cceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578           92 DSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE  170 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~  170 (440)
                      ..+..++|+|||++| ++++.++.|++||+.+++.     .... .....+..++|++++..+++.....  ..+.+++.
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  103 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----IATV-PAGSSPQGVAVSPDGKQVYVTNMAS--STLSVIDT  103 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----EEEE-ECSSSEEEEEECTTSSEEEEEETTT--TEEEEEET
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-----eeee-ecccccccccccccccccccccccc--ceeeeccc
Confidence            567899999999987 5667899999999987642     2222 2224578999999999888876653  34444443


Q ss_pred             ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCC
Q 013578          171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL  250 (440)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  250 (440)
                      ....                        ....+..........+++++..+++++..++.+.+|+..+++.+..+..+. 
T Consensus       104 ~~~~------------------------~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  158 (301)
T d1l0qa2         104 TSNT------------------------VAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-  158 (301)
T ss_dssp             TTTE------------------------EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-
T ss_pred             ccce------------------------eeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC-
Confidence            3221                        111112222233445688999778888889999999999998888877654 


Q ss_pred             cccEEEecCCCCeEEEEecCCC-EEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC---CCcEEEE
Q 013578          251 KNNMAAISPNGRFLAAAAFTAD-VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK---DGTLRVW  326 (440)
Q Consensus       251 ~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---dg~i~iw  326 (440)
                      .+..++++++++.+++++.+.. +.+|+.....        ...... +...+..++|++++..++.++.   +++|++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~  229 (301)
T d1l0qa2         159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS--------VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--------EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             CceEEEeeccccceeeeccccccccccccccee--------eeeccc-ccCCcceeeccccccccccccccceeeeeeee
Confidence            4678999999999988887654 4455543221        222232 3456788999999998776543   4689999


Q ss_pred             ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE-Eec-CCEEEEEEcCCccchhhhh
Q 013578          327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATH-GSTLQWLSVETGKVLDTAE  393 (440)
Q Consensus       327 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~-~~~i~i~d~~~~~~~~~~~  393 (440)
                      |+.+++....       ++     .   ...+..++|+|||++|. ++. ++.|++||+++++.+.++.
T Consensus       230 D~~t~~~~~~-------~~-----~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         230 DTGTNKITAR-------IP-----V---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ETTTTEEEEE-------EE-----C---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ecCCCeEEEE-------Ec-----C---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            9987654321       10     0   12357899999999764 444 7999999999999887764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=2.6e-19  Score=160.63  Aligned_cols=288  Identities=12%  Similarity=0.053  Sum_probs=173.7

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccC
Q 013578          104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQS  183 (440)
Q Consensus       104 ~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (440)
                      -++++.+.||+|+|||+.+++.     +..... +..+..++|+|||+++++++.+   ..+.+|+........      
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~-----~~~l~~-g~~~~~vafSPDGk~l~~~~~d---~~v~vwd~~t~~~~~------   97 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKI-----VKVIDT-GYAVHISRMSASGRYLLVIGRD---ARIDMIDLWAKEPTK------   97 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSE-----EEEEEC-CSSEEEEEECTTSCEEEEEETT---SEEEEEETTSSSCEE------
T ss_pred             EEEEEEcCCCEEEEEECCCCcE-----EEEEeC-CCCeeEEEECCCCCEEEEEeCC---CCEEEEEccCCceeE------
Confidence            3568888999999999998752     222222 3568999999999999988766   366777655431100      


Q ss_pred             CCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCe
Q 013578          184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF  263 (440)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  263 (440)
                             ........     ..........++|||+.+++++..++.+++||..+++++..+..+...+....+.+++..
T Consensus        98 -------~~~i~~~~-----~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (426)
T d1hzua2          98 -------VAEIKIGI-----EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  165 (426)
T ss_dssp             -------EEEEECCS-----EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             -------EEEEeCCC-----CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCce
Confidence                   00000000     011112234568999977788889999999999999988877766555544444444432


Q ss_pred             -EEEEecCCCEEEEEeEecCCCce----eeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCC
Q 013578          264 -LAAAAFTADVKVWEIVYSKDGLV----KAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDED  337 (440)
Q Consensus       264 -l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~  337 (440)
                       .++++.|+...++..........    ..........++...+..+.|+|++++++++. .+..+.+|+..++......
T Consensus       166 ~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~  245 (426)
T d1hzua2         166 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV  245 (426)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEe
Confidence             22333344333332211000000    00001223345677889999999999887766 5567899999876543211


Q ss_pred             CCccccccccccCCCCCeeeeeeEEeCCCC--CEEEEe--cCCEEEEEEcCCc-------cchhhhhccccCCeEEEEec
Q 013578          338 PKTLKVLPIPLLDSNGATLQYDRLSLSSDG--KILAAT--HGSTLQWLSVETG-------KVLDTAEKAHEGEITCMAWA  406 (440)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~--~~~~i~i~d~~~~-------~~~~~~~~~h~~~v~~v~~~  406 (440)
                      ...            ..........+..++  ...+..  .++.+.+|+....       +....+ .+|...+..++|+
T Consensus       246 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l-~g~~~~v~~v~~s  312 (426)
T d1hzua2         246 DVG------------KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-QGQGGGSLFIKTH  312 (426)
T ss_dssp             ECS------------SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEE-ECSSSCCCCEECC
T ss_pred             ccC------------CcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEE-ecCCCceeEEEcC
Confidence            100            000111123333222  222222  3677777776543       455556 5899999999999


Q ss_pred             CCCCCCCCCcceEEE-------EeeCCCeEEEEeCCCCCC
Q 013578          407 PKTIPMGNQQVSVLA-------TSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       407 ~~~~~~~~~~~~~l~-------t~~~Dg~i~vw~~~~~~~  439 (440)
                      |++        .+|+       +++.|++|+|||+.+++.
T Consensus       313 Pdg--------~~l~v~~~~~~s~~~~~tv~vwd~~t~~~  344 (426)
T d1hzua2         313 PKS--------SHLYVDTTFNPDARISQSVAVFDLKNLDA  344 (426)
T ss_dssp             TTC--------SEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             CCC--------ceEEEeecCCCCcccCCEEEEEECCCCCc
Confidence            998        7888       456789999999988763

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=4.8e-18  Score=149.61  Aligned_cols=311  Identities=8%  Similarity=-0.029  Sum_probs=188.4

Q ss_pred             ccccCcceeEEEEccCCCEEEEe-----eCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           87 LKGHGDSVTGLCFSSDGKCLATA-----CADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        87 l~~H~~~V~~l~~s~dg~~l~t~-----s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      ..+|.+++.+++++|||+.++..     +.++.|.+||..+++.     +.....  +....++|+|||++++++.....
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~-----~~~~~~--~~~~~~a~SpDG~~l~va~~~~~   88 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-----LGHVNG--GFLPNPVAAHSGSEFALASTSFS   88 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE-----EEEEeC--CCCccEEEcCCCCEEEEEeecCC
Confidence            45789999999999999998764     2345688888877642     222212  33447999999999999876532


Q ss_pred             -------cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe-eCCceEEE
Q 013578          162 -------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC-SEGTDISI  233 (440)
Q Consensus       162 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~v  233 (440)
                             ...+.+|+...........                .+...............++++++..++.. ..++.+.+
T Consensus        89 ~~~~~~~~~~v~v~D~~t~~~~~~~~----------------~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~  152 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPVTFLPIADIE----------------LPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGL  152 (373)
T ss_pred             cccccccceEEEEEECCCCcEEEEEe----------------cCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEE
Confidence                   2346666655442111100                00111111112223345577777444333 44667888


Q ss_pred             EeCCCCceeeeeeCCCCcccEEEecCCCCeE-EEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC
Q 013578          234 WHGKTGKLLGNVDTNQLKNNMAAISPNGRFL-AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE  312 (440)
Q Consensus       234 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  312 (440)
                      |+....+......    ...++.++|+++.+ ++.+.|+.+.+|+..........  .......++......+.+++++.
T Consensus       153 ~~~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  226 (373)
T d2madh_         153 VVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL--VGAMLTAAQNLLTQPAQANKSGR  226 (373)
T ss_pred             eeccCCeEEEEec----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEE--eeeccccCccceeeeEEECCCce
Confidence            9888776655443    35678899998765 57788999999998654411000  00001112222344556666655


Q ss_pred             EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-----------ecCCEEEEE
Q 013578          313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-----------THGSTLQWL  381 (440)
Q Consensus       313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-----------~~~~~i~i~  381 (440)
                       ++..+.++.+.+|+..................  .............+++++++..++.           ..++.+.+|
T Consensus       227 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~  303 (373)
T d2madh_         227 -IVWPVYSGKILQADISAAGATNKAPIDALSGG--RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             -EEEecCCceEEEEEcCCCeEEEEEeeccccCc--EEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence             45566788999999886543211110000000  0000001112334666776665443           235789999


Q ss_pred             EcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce--EEEEeeCCCeEEEEeCCCCCC
Q 013578          382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS--VLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~--~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      |..+++.+..+.  +...+.+++|+||+        +  ++++++.|++|+|||+.+++.
T Consensus       304 d~~t~~~~~~~~--~~~~~~~~a~spDG--------~~~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         304 TGLVGQTSSQIS--LGHDVDAISVAQDG--------GPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             ECCCCcEEEEec--CCCCeeEEEECCCC--------CEEEEEEeCCCCeEEEEECCCCCE
Confidence            999999988874  77789999999997        4  457899999999999999863

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=1.4e-19  Score=162.00  Aligned_cols=203  Identities=10%  Similarity=0.003  Sum_probs=149.1

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      ++++.+.+++|.+||..+++++..+..+. .+..++|+|||+++++++.|+.|++||+.+.+..   ....+....+|.+
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~---~~~~i~~~~~~~~  109 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT---TVAEIKIGSEARS  109 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC---EEEEEECCSEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce---EEEEEecCCCCCC
Confidence            57899999999999999999999998774 5889999999999999999999999998765421   1122333456777


Q ss_pred             ceEEEEEcCCCCEE-EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCE
Q 013578          301 AVTWLCFAPNSEQI-ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGST  377 (440)
Q Consensus       301 ~v~~~~~~p~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~  377 (440)
                      .+.+..|+|||++| ++++.+++|++||..++..+............   ...........+.++|+|..++.+  .++.
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~  186 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE---QEYHPEPRVAAILASHYRPEFIVNVKETGK  186 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT---CCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccc---eeccCCCceeEEEECCCCCEEEEEEccCCe
Confidence            78888899999986 67888999999999987654321111111100   001122335568899999976653  3789


Q ss_pred             EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC-CCeEEEEeCCCCC
Q 013578          378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV-DKKVKLWLAPSLE  438 (440)
Q Consensus       378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~vw~~~~~~  438 (440)
                      |.+||..+++........+...+.+++|+|++        +++++++. ++.+.+|+..+.+
T Consensus       187 i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg--------~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         187 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSH--------RYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTTS--------CEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEEEEccCCCcceEEEEcccCccccceECCCC--------CEEEEeccccceEEEeecccce
Confidence            99999998875543323466788999999998        76666554 5678888887653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.2e-17  Score=144.53  Aligned_cols=292  Identities=12%  Similarity=0.110  Sum_probs=178.1

Q ss_pred             EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCC
Q 013578          105 CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSK  184 (440)
Q Consensus       105 ~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (440)
                      .+++++.|++|+||+++.....  ..+ ....+.+.+..++|+|||++|++++.+.  ..+.+|+........       
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l--~~~-~~~~~~~~v~~la~spDG~~L~v~~~~d--~~i~~~~i~~~~~~~-------   73 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGAL--TLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPE--FRVLAYRIAPDDGAL-------   73 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCE--EEE-EEEECSSCCCCEEECTTSSEEEEEETTT--TEEEEEEECTTTCCE-------
T ss_pred             EEEECCCCCcEEEEEEcCCCCe--EEE-EEEcCCCCEeEEEEeCCCCEEEEEECCC--CeEEEEEEeCCCCcE-------
Confidence            4577889999999999865432  122 2234668899999999999998776542  344444432210000       


Q ss_pred             CCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee--eeCCCCcccEEEecCCCC
Q 013578          185 LPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN--VDTNQLKNNMAAISPNGR  262 (440)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~  262 (440)
                                   ...........+..+.++|||+.+++++..++.|.+|+.........  ...+...+.++.++|+++
T Consensus        74 -------------~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~  140 (333)
T d1ri6a_          74 -------------TFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR  140 (333)
T ss_dssp             -------------EEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS
T ss_pred             -------------EEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecce
Confidence                         00000111122344567999995555555688899998876654333  334556678899999999


Q ss_pred             eEEEEecC-CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCc
Q 013578          263 FLAAAAFT-ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKT  340 (440)
Q Consensus       263 ~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~  340 (440)
                      ++++++.+ ..|.+|+...........  ..............++|++++.+++... ..+...+|++........   .
T Consensus       141 ~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~  215 (333)
T d1ri6a_         141 TLWVPALKQDRICLFTVSDDGHLVAQD--PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE---C  215 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEE--EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE---E
T ss_pred             eeeccccccceeeEEEeccCCcceeee--ceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccccee---e
Confidence            98888754 568899875543211111  1111222345568899999998876554 566788888754321100   0


Q ss_pred             cccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhh--ccccCCeEEEEecCCCCCCCCCc
Q 013578          341 LKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAE--KAHEGEITCMAWAPKTIPMGNQQ  416 (440)
Q Consensus       341 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~~~~  416 (440)
                      ..... ..............++++++++++....  ++.+.+|++..........  ..+...+.+++|+|||       
T Consensus       216 ~~~~~-~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDG-------  287 (333)
T d1ri6a_         216 VQTLD-MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG-------  287 (333)
T ss_dssp             EEEEE-CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS-------
T ss_pred             eeeee-eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCC-------
Confidence            00000 0011112223355688999999777643  6899999887654433321  1244568899999998       


Q ss_pred             ceEEEEe-eCCCeEEEEeCC
Q 013578          417 VSVLATS-SVDKKVKLWLAP  435 (440)
Q Consensus       417 ~~~l~t~-~~Dg~i~vw~~~  435 (440)
                       ++|+++ +.++.|++|+++
T Consensus       288 -k~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         288 -KYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             -SEEEEECTTTCEEEEEEEE
T ss_pred             -CEEEEEECCCCeEEEEEEE
Confidence             766655 456899999653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=2.4e-19  Score=155.55  Aligned_cols=278  Identities=10%  Similarity=0.060  Sum_probs=169.5

Q ss_pred             CCCCcccCcc----ccccccc--cCcceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578           73 KDQNKRHHPL----DVNTLKG--HGDSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA  145 (440)
Q Consensus        73 ~~~~~~~~~~----~~~~l~~--H~~~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~  145 (440)
                      .+..+..|+.    .+.++..  +...+.+++|+|||++| ++++.|+.|.+||+.+++............+...+..++
T Consensus         9 ~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~   88 (337)
T d1pbyb_           9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA   88 (337)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred             CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEE
Confidence            3444444443    2444443  45668899999999987 566789999999999875321111111111234577899


Q ss_pred             EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578          146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC  225 (440)
Q Consensus       146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  225 (440)
                      |+|++++++++..+....   .+.....            ......|+.........+........+.++++|+ +++++
T Consensus        89 ~s~dg~~l~~~~~~~~~~---~~~~~~~------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~  152 (337)
T d1pbyb_          89 LSPDGKTLAIYESPVRLE---LTHFEVQ------------PTRVALYDAETLSRRKAFEAPRQITMLAWARDGS-KLYGL  152 (337)
T ss_dssp             ECTTSSEEEEEEEEEEEC---SSCEEEC------------CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS-CEEEE
T ss_pred             EcCCCcEEEEeecCCcce---eeecccc------------ccceeeccccCCeEEEeccccCCceEEEEcCCCC-EEEEE
Confidence            999999998887542111   1100000            0111223333333333333334455667789999 66666


Q ss_pred             eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEE------------------------ecCCCEEEEEeEec
Q 013578          226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAA------------------------AFTADVKVWEIVYS  281 (440)
Q Consensus       226 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~------------------------~~dg~i~i~d~~~~  281 (440)
                      +.+  +.+||..+++....+..+... ....+++++..+...                        ..++.+.+|+...+
T Consensus       153 ~~~--~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (337)
T d1pbyb_         153 GRD--LHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             SSS--EEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             cCC--cceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence            544  788999999888777554322 222333433322111                        22334556665433


Q ss_pred             CCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE
Q 013578          282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL  361 (440)
Q Consensus       282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  361 (440)
                      .       .....+..+...+..+.++|++.+++.+  ++.|++||+.++..+..       +.        ....+.++
T Consensus       230 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~-------~~--------~~~~~~~~  285 (337)
T d1pbyb_         230 E-------MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR-------VP--------LPHSYYSV  285 (337)
T ss_dssp             C-------EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE-------EE--------CSSCCCEE
T ss_pred             c-------EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEE-------Ec--------CCCCEEEE
Confidence            2       1223345567778889999999988766  57999999997765421       10        11236789


Q ss_pred             EeCCCCCEEEEec-CCEEEEEEcCCccchhhhh
Q 013578          362 SLSSDGKILAATH-GSTLQWLSVETGKVLDTAE  393 (440)
Q Consensus       362 ~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~  393 (440)
                      +|+|||++|++++ ++.|++||.++++.+..+.
T Consensus       286 ~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         286 NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            9999999988875 8999999999999887764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.7e-17  Score=144.91  Aligned_cols=300  Identities=12%  Similarity=0.007  Sum_probs=180.6

Q ss_pred             ceeEEEEccCCCEEEEee-----CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC-------
Q 013578           93 SVTGLCFSSDGKCLATAC-----ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL-------  160 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s-----~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~-------  160 (440)
                      ++.-.+.+|||+.++...     .++.|.+||..+++..     ....  .+....++|+|||+++++++...       
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~-----~~~~--~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~   75 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-----GMID--GGFLPNPVVADDGSFIAHASTVFSRIARGE   75 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE-----EEEE--ECSSCEEEECTTSSCEEEEEEEEEETTEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEE-----EEEE--CCCCCceEEcCCCCEEEEEeCCCccccccC
Confidence            344456789999887653     4567999999876522     1111  13455899999999998765421       


Q ss_pred             CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe-eCCceEEEEeCCCC
Q 013578          161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC-SEGTDISIWHGKTG  239 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~  239 (440)
                      ....+.+|+..............                .........+....++++++..++.. +.+..+.+|+..++
T Consensus        76 ~d~~v~v~D~~t~~~~~~~~~~~----------------~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~  139 (355)
T d2bbkh_          76 RTDYVEVFDPVTLLPTADIELPD----------------APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK  139 (355)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETT----------------CCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             CCCEEEEEECCCCCEEEEEecCC----------------cceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC
Confidence            12457777765542211110000                00000011223445688988544432 45678999999999


Q ss_pred             ceeeeeeCCCC-------cccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC
Q 013578          240 KLLGNVDTNQL-------KNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS  311 (440)
Q Consensus       240 ~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  311 (440)
                      +.+..+..+..       ....+.++++++.++... .++.+.+++....             ...+...+....+.+++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~  206 (355)
T d2bbkh_         140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF-------------HPEDEFLINHPAYSQKA  206 (355)
T ss_dssp             EEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC-------------SCTTSCBCSCCEEETTT
T ss_pred             cEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc-------------cceecceeeeccccCCC
Confidence            88877765432       122345555555554432 2333444332211             12244455667788888


Q ss_pred             CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-----------CCEEEE
Q 013578          312 EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-----------GSTLQW  380 (440)
Q Consensus       312 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------~~~i~i  380 (440)
                      ..++.++.++.+++|++..+.............  ..............+++++++..++...           ...|.+
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v  284 (355)
T d2bbkh_         207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE--AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  284 (355)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCH--HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeccCCccc--ceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence            889999999999999998664321111110000  0000001111234589999999777532           147999


Q ss_pred             EEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          381 LSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       381 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ||..+++.+..+.  +...+.+++|+||+      +..++++++.|+.|+|||+.+++
T Consensus       285 ~d~~t~~~~~~~~--~~~~~~~~a~spDG------~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         285 LDAKTGERLAKFE--MGHEIDSINVSQDE------KPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             EETTTCCEEEEEE--EEEEECEEEECCSS------SCEEEEEETTTTEEEEEETTTCC
T ss_pred             EeCCCCcEEEEec--CCCCEEEEEEcCCC------CeEEEEEECCCCEEEEEECCCCC
Confidence            9999999888874  55668999999997      11256777889999999999886

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=8.3e-17  Score=139.10  Aligned_cols=281  Identities=12%  Similarity=0.128  Sum_probs=167.3

Q ss_pred             CCCCCCcccCccc----cc--cccccCcceeEEEEccCCCEEEEe-eCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578           71 GDKDQNKRHHPLD----VN--TLKGHGDSVTGLCFSSDGKCLATA-CADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA  143 (440)
Q Consensus        71 ~~~~~~~~~~~~~----~~--~l~~H~~~V~~l~~s~dg~~l~t~-s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~  143 (440)
                      +..+..++.|...    +.  ....|.+.|.+|+|+|||++|+++ ..|+.|++|++..........  ........+..
T Consensus        10 ~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~--~~~~~~~~p~~   87 (333)
T d1ri6a_          10 SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA--AESALPGSLTH   87 (333)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE--EEEECSSCCSE
T ss_pred             CCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe--eecccCCCceE
Confidence            3445555555431    22  233688999999999999998655 458999999998765432222  22234466889


Q ss_pred             EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578          144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA  223 (440)
Q Consensus       144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  223 (440)
                      ++|+|||++++++..+.  ..+.++.........                     ..........+..+.++++++..+.
T Consensus        88 l~~spDg~~l~v~~~~~--~~v~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~s~d~~~~~~  144 (333)
T d1ri6a_          88 ISTDHQGQFVFVGSYNA--GNVSVTRLEDGLPVG---------------------VVDVVEGLDGCHSANISPDNRTLWV  144 (333)
T ss_dssp             EEECTTSSEEEEEETTT--TEEEEEEEETTEEEE---------------------EEEEECCCTTBCCCEECTTSSEEEE
T ss_pred             EEEcCCCCEEeecccCC--Cceeeecccccccee---------------------cccccCCCccceEEEeeecceeeec
Confidence            99999999999987653  333333322211000                     0000011112334556899996666


Q ss_pred             EeeCCceEEEEeCCCCceeeee------eCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeee-
Q 013578          224 SCSEGTDISIWHGKTGKLLGNV------DTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQL-  295 (440)
Q Consensus       224 s~~~d~~i~vwd~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~-  295 (440)
                      ....+..|.+|+..........      .........++|++++..++... ..+...+|+........ ......... 
T Consensus       145 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~  223 (333)
T d1ri6a_         145 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI-ECVQTLDMMP  223 (333)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC-EEEEEEECSC
T ss_pred             cccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccce-eeeeeeeeee
Confidence            6667778999998765432211      12234457899999998887665 45567788764332111 111111111 


Q ss_pred             --eccccceEEEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578          296 --KGHKSAVTWLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA  372 (440)
Q Consensus       296 --~~h~~~v~~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  372 (440)
                        .........+++++++++++.. ..++.+.+|++.......      ....  ..   .....+..++|+|||++|++
T Consensus       224 ~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~---~~~~~p~~~a~spDGk~l~v  292 (333)
T d1ri6a_         224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL------SKEG--FQ---PTETQPRGFNVDHSGKYLIA  292 (333)
T ss_dssp             TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE------EEEE--EE---ECSSSCCCEEECTTSSEEEE
T ss_pred             cCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE------EEEE--Ee---CCCCCeeEEEEeCCCCEEEE
Confidence              1233456778999999876554 567899999987542211      0000  00   01122457999999998877


Q ss_pred             ec--CCEEEEE--EcCCccc
Q 013578          373 TH--GSTLQWL--SVETGKV  388 (440)
Q Consensus       373 ~~--~~~i~i~--d~~~~~~  388 (440)
                      +.  ++.|.+|  |.++|++
T Consensus       293 a~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         293 AGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             ECTTTCEEEEEEEETTTTEE
T ss_pred             EECCCCeEEEEEEECCCCcE
Confidence            54  6889998  4566654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.74  E-value=2e-17  Score=143.72  Aligned_cols=280  Identities=11%  Similarity=0.037  Sum_probs=165.0

Q ss_pred             CCCCCCCCcccCccc----ccccc-ccCcceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecC---CCCC
Q 013578           69 SHGDKDQNKRHHPLD----VNTLK-GHGDSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINL---PPGG  139 (440)
Q Consensus        69 ~~~~~~~~~~~~~~~----~~~l~-~H~~~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~---~~~~  139 (440)
                      ..+..+..+..++..    +++++ .|...+.+++|+|||+++ ++++.++.|.+||+.++....  ......   ....
T Consensus        12 ~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~--~~~~~~~~~~~~~   89 (346)
T d1jmxb_          12 IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF--HANLSSVPGEVGR   89 (346)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--EEESCCSTTEEEE
T ss_pred             EEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee--eecccccccccCC
Confidence            334445555555443    45554 456678999999999987 556688999999998764321  111111   1113


Q ss_pred             CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEe---ecccccccCC
Q 013578          140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTL---FGASATYGTA  216 (440)
Q Consensus       140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  216 (440)
                      .+..++|+|||++++++..+............               .....|+.........+...   .........+
T Consensus        90 ~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          90 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKP---------------PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             CSSCEEECTTSSEEEEEEEEEEECSSCEEECC---------------CEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             ceEEEEEecCCCEEEEEecCCcceeeeeccCc---------------ceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            57789999999999887654211110000000               00111111111111111111   1112222344


Q ss_pred             CCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEE---------------------
Q 013578          217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVK---------------------  274 (440)
Q Consensus       217 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~---------------------  274 (440)
                      ++. +++++   ..+.+|+..+++.+..+..+.. ...+.++|++..++... .++.+.                     
T Consensus       155 ~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (346)
T d1jmxb_         155 DGS-LYVAG---PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  229 (346)
T ss_dssp             TSC-EEEES---SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             CCE-EEEeC---CcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCC
Confidence            554 44432   3489999999998888765433 34456677665543332 233333                     


Q ss_pred             ----EEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccC
Q 013578          275 ----VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLD  350 (440)
Q Consensus       275 ----i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  350 (440)
                          +||+....       ........|...+..+.+++++.+++.... +.|.+||+.+++.+..       ..     
T Consensus       230 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~-------~~-----  289 (346)
T d1jmxb_         230 YGYLSVDLKTGK-------THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKA-------AN-----  289 (346)
T ss_dssp             EEEEEEETTTCC-------EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEE-------EE-----
T ss_pred             ceEEEEECCCCc-------eEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEE-------Ec-----
Confidence                33332221       123334567778889999999888887764 5899999987654321       10     


Q ss_pred             CCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhh
Q 013578          351 SNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAE  393 (440)
Q Consensus       351 ~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~  393 (440)
                         ....+.+++|+|||++|+++. ++.|++||.++++.+..+.
T Consensus       290 ---~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         290 ---LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             ---CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             ---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence               012367899999999998865 8999999999999988773

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=2.6e-15  Score=131.78  Aligned_cols=273  Identities=10%  Similarity=-0.014  Sum_probs=164.1

Q ss_pred             cccccccCcceeEEEEccCCCEEEEee----------CCCcEEEEecCCCCCcceeeEEecCCC-------CCCCceEEE
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATAC----------ADGVIRVHKLDDASSKSFKFLRINLPP-------GGPPTAVAF  146 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s----------~dg~v~vW~~~~~~~~~~~~~~~~~~~-------~~~v~~v~~  146 (440)
                      +.++.+|...  .++|+|||++|++++          .++.|++||..+++..     .....+       ......+.|
T Consensus        60 ~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~-----~~~~~~~~~~~~~~~~~~~~~~  132 (373)
T d2madh_          60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI-----ADIELPDAPRFDVGPYSWMNAN  132 (373)
T ss_pred             EEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEE-----EEEecCCcceeEeccCCCcEEE
Confidence            4455555443  799999999999875          4678999999887532     111111       123456889


Q ss_pred             ccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee
Q 013578          147 ADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS  226 (440)
Q Consensus       147 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  226 (440)
                      +++++.+++...+.. ..+.+++....                           .............++++++..+++.+
T Consensus       133 s~dg~~~~v~~~~~~-~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~s~~g~~~~v~~~  184 (373)
T d2madh_         133 TPNNADLLFFQFAAG-PAVGLVVQGGS---------------------------SDDQLLSSPTCYHIHPGAPSTFYLLC  184 (373)
T ss_pred             EeCCCcEEEEEEcCC-CceEEeeccCC---------------------------eEEEEeccceeEEEecCCCcEEEEEc
Confidence            999988877665422 12222222111                           11111122334455788887889999


Q ss_pred             CCceEEEEeCCCCceeeeeeCCC------CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeee----eeeeee
Q 013578          227 EGTDISIWHGKTGKLLGNVDTNQ------LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVT----SVMQLK  296 (440)
Q Consensus       227 ~d~~i~vwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~  296 (440)
                      .|+.+.+|+...++.........      .....+.+++++.+ +..+.++.+.+|+.............    ......
T Consensus       185 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (373)
T d2madh_         185 AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAPIDALSGGRKADT  263 (373)
T ss_pred             CCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeee
Confidence            99999999999887765543221      11233455665544 45557888999887543210000000    000000


Q ss_pred             ccccceEEEEEcCCCCEE----------EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC
Q 013578          297 GHKSAVTWLCFAPNSEQI----------ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD  366 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~~~l----------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  366 (440)
                      ........++++|++..+          ++...++.+.+||+.+++.+...               .+...+..++|+||
T Consensus       264 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~---------------~~~~~~~~~a~spD  328 (373)
T d2madh_         264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI---------------SLGHDVDAISVAQD  328 (373)
T ss_pred             eccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe---------------cCCCCeeEEEECCC
Confidence            011223445566655544          44556778999999876543211               11233668999999


Q ss_pred             CCE--EEEe-cCCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578          367 GKI--LAAT-HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       367 g~~--l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                      |+.  ++++ .++.|++||+.+++.+..+ ..+....+.+++.++
T Consensus       329 G~~~l~vt~~~d~~v~v~D~~tg~~~~~~-~~~g~~P~~l~~~~~  372 (373)
T d2madh_         329 GGPDLYALSAGTEVLHIYDAGAGDQDQST-VELGSGPQVLSVMNE  372 (373)
T ss_pred             CCEEEEEEeCCCCeEEEEECCCCCEEEEE-CCCCCCCcEEEEecC
Confidence            984  3444 4899999999999999988 467777777776553

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=3.4e-16  Score=136.55  Aligned_cols=277  Identities=13%  Similarity=0.094  Sum_probs=162.5

Q ss_pred             cccccccCcceeEEEEccCCCEEEEe----------eCCCcEEEEecCCCCCcceeeEEecCC----CCCCCceEEEccC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATA----------CADGVIRVHKLDDASSKSFKFLRINLP----PGGPPTAVAFADN  149 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~----------s~dg~v~vW~~~~~~~~~~~~~~~~~~----~~~~v~~v~~~~~  149 (440)
                      +.++..+.  +..++|||||++|++.          +.|+.|++||+.++....  .......    .......++|+++
T Consensus        41 ~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d  116 (355)
T d2bbkh_          41 IGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA--DIELPDAPRFLVGTYPWMTSLTPD  116 (355)
T ss_dssp             EEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE--EEEETTCCCCCBSCCGGGEEECTT
T ss_pred             EEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEE--EEecCCcceeecCCCCceEEEecC
Confidence            44454443  4479999999988764          457899999998865321  2221111    1234577999999


Q ss_pred             CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCc
Q 013578          150 ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGT  229 (440)
Q Consensus       150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  229 (440)
                      +++++++.... ...+.+++..........                ..................+++++..+++....++
T Consensus       117 g~~~~v~~~~~-~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~  179 (355)
T d2bbkh_         117 GKTLLFYQFSP-APAVGVVDLEGKAFKRML----------------DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG  179 (355)
T ss_dssp             SSEEEEEECSS-SCEEEEEETTTTEEEEEE----------------ECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred             CCeeEEecCCC-CceeeeeecCCCcEeeEE----------------ecCCcceEeecCCcceEEEcCCCCEEEEEecCCC
Confidence            99998876442 234555554433111000                0000001111111122233555554444444555


Q ss_pred             eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc----------c
Q 013578          230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH----------K  299 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h----------~  299 (440)
                      .+.+++......     .+...+....+.+++..++.++.++.+++|++..+...      .+.....+          .
T Consensus       180 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~p  248 (355)
T d2bbkh_         180 TPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK------FLPAVEALTEAERADGWRP  248 (355)
T ss_dssp             CCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE------ECCCEESSCHHHHHTTEEE
T ss_pred             eEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE------EEeccCCcccceEeeeeec
Confidence            555555443322     12333455677888888999999999999998654311      11111111          1


Q ss_pred             cceEEEEEcCCCCEEEEEeCC----------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-
Q 013578          300 SAVTWLCFAPNSEQIITASKD----------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-  368 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-  368 (440)
                      .....++++|++..++....+          ..|.+||..+++.+..       +        .....+.+++|+|||+ 
T Consensus       249 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~-------~--------~~~~~~~~~a~spDG~~  313 (355)
T d2bbkh_         249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK-------F--------EMGHEIDSINVSQDEKP  313 (355)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE-------E--------EEEEEECEEEECCSSSC
T ss_pred             cceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEE-------e--------cCCCCEEEEEEcCCCCe
Confidence            233458899999887766543          3699999987644321       1        1123467899999998 


Q ss_pred             -EEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578          369 -ILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       369 -~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                       +++++. ++.|++||.++++.+..+. ++......+.+.++
T Consensus       314 ~l~v~~~~d~~i~v~D~~tg~~~~~i~-~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         314 LLYALSTGDKTLYIHDAESGEELRSVN-QLGHGPQVITTADM  354 (355)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEC-CCCSSCCEEECCCC
T ss_pred             EEEEEECCCCEEEEEECCCCCEEEEEe-CcCCCccEEEeCCC
Confidence             334444 7999999999999998883 55555555555443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=5.2e-15  Score=129.61  Aligned_cols=311  Identities=5%  Similarity=-0.107  Sum_probs=178.4

Q ss_pred             ccCcceeEEEEccCCCEE---EEeeCCCcEEEE--ecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC---
Q 013578           89 GHGDSVTGLCFSSDGKCL---ATACADGVIRVH--KLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL---  160 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l---~t~s~dg~v~vW--~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~---  160 (440)
                      .+.+....++..++++..   ++...+|+.++|  |..+++  ......   .  +....++|+||++++++.+...   
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~--~~~~~~---~--~~~~~~a~spDg~~i~~~~~~~~~~   89 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGV--TLGHSL---G--AFLSLAVAGHSGSDFALASTSFARS   89 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTE--EEEEEE---E--CTTCEEEECTTSSCEEEEEEEETTT
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCc--EEEEEe---C--CCCCcceECCCCCEEEEEcccCccc
Confidence            355566666778888753   234566665555  554443  222221   1  2234689999999999876431   


Q ss_pred             ----CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578          161 ----SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG  236 (440)
Q Consensus       161 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~  236 (440)
                          ....+.+|+..............                .........+..+.++|||+.++++...++.+.+||+
T Consensus        90 ~~g~~d~~v~v~D~~t~~~~~~i~~p~----------------~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~  153 (368)
T d1mdah_          90 AKGKRTDYVEVFDPVTFLPIADIELPD----------------APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSV  153 (368)
T ss_dssp             TSSSEEEEEEEECTTTCCEEEEEEETT----------------SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEE
T ss_pred             cccccCCeEEEEECCCCcEeeeecCCc----------------cceecccCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence                12347777765542211111000                0000011123345569999966666667899999999


Q ss_pred             CCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEE
Q 013578          237 KTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT  316 (440)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  316 (440)
                      .+++.+..+..+.....   .......++..+.||.+.++++.........  ........+...+....+.+++..+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (368)
T d1mdah_         154 PGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGI--VGAQCTGAQNCSSQAAQANYPGMLVWA  228 (368)
T ss_dssp             TTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEE--CCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred             CCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeee--eecccccccccceeecccccCcEEEEe
Confidence            99999888876543321   1122345566677888877776544321111  111223345555667788888776654


Q ss_pred             EeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--------CEEEEEEcCCc
Q 013578          317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--------STLQWLSVETG  386 (440)
Q Consensus       317 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--------~~i~i~d~~~~  386 (440)
                      .  ++.+.++++................  ..............+++++++..+....  +        ..|.+||..++
T Consensus       229 ~--~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~  304 (368)
T d1mdah_         229 V--ASSILQGDIPAAGATMKAAIDGNES--GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             B--SSCCEEEECCSSCCEEECCCCSSCT--HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             c--CCCEEEEeecCCceEEEeecccccc--eeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC
Confidence            4  4556666665433221110000000  0000000111123588999988665531  1        36999999999


Q ss_pred             cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          387 KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       387 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      +.+..+.  +...+.+++|+||+      +..+++++..|+.|++||..+++.
T Consensus       305 ~~~~~~~--~~~~~~~~a~spDG------~~~ly~s~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         305 QTSGPIS--NGHDSDAIIAAQDG------ASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             CEEECCE--EEEEECEEEECCSS------SCEEEEEETTTTEEEEEESSSCEE
T ss_pred             cEeEEec--CCCceeEEEECCCC------CEEEEEEeCCCCeEEEEECCCCCE
Confidence            9988874  55679999999997      112467778899999999998763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=5.9e-13  Score=116.26  Aligned_cols=260  Identities=10%  Similarity=-0.006  Sum_probs=150.3

Q ss_pred             cccccccCcceeEEEEccCCCEEEEee----------CCCcEEEEecCCCCCcceeeEEec----CCCCCCCceEEEccC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATAC----------ADGVIRVHKLDDASSKSFKFLRIN----LPPGGPPTAVAFADN  149 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s----------~dg~v~vW~~~~~~~~~~~~~~~~----~~~~~~v~~v~~~~~  149 (440)
                      +.++.+|...  .++|+|||++|++.+          .|++|++||..+.+...  .+...    .........++|+||
T Consensus        59 ~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~--~i~~p~~~~~~~g~~p~~~a~SpD  134 (368)
T d1mdah_          59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA--DIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE--EEEETTSCSCCBSCCTTSEEECTT
T ss_pred             EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEee--eecCCccceecccCCccceEECCC
Confidence            4455555544  689999999988754          47889999998765321  11111    112234568999999


Q ss_pred             CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCc
Q 013578          150 ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGT  229 (440)
Q Consensus       150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  229 (440)
                      |++++++..+  ...+.+|+........                           ......+....+++...++..+.||
T Consensus       135 Gk~l~va~~~--~~~v~~~d~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~v~~~~Dg  185 (368)
T d1mdah_         135 SACLLFFLFG--SSAAAGLSVPGASDDQ---------------------------LTKSASCFHIHPGAAATHYLGSCPA  185 (368)
T ss_dssp             SSCEEEEECS--SSCEEEEEETTTEEEE---------------------------EEECSSCCCCEEEETTEEECCCCTT
T ss_pred             CCEEEEEeCC--CCeEEEEECCCCcEeE---------------------------EeeccCcceEccCCCceEEEEcCCC
Confidence            9999988654  2455555544331111                           0011111112333444677777888


Q ss_pred             eEEEEeCCCCceeeee------eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee--eee--eeccc
Q 013578          230 DISIWHGKTGKLLGNV------DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS--VMQ--LKGHK  299 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~--~~~h~  299 (440)
                      .+.++++.........      ..+...+....+.+++..+...  .+.++++++.............  ...  .....
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (368)
T d1mdah_         186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             SCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             CEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecC
Confidence            8888887654332211      2233344566777777665543  5667777764433100000000  000  00011


Q ss_pred             cceEEEEEcCCCCEEEEEeCC---------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-E
Q 013578          300 SAVTWLCFAPNSEQIITASKD---------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-I  369 (440)
Q Consensus       300 ~~v~~~~~~p~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~  369 (440)
                      .....++++|++..++....+         ..|.+||..+++.+...               .....+..++|+|||+ +
T Consensus       264 ~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~---------------~~~~~~~~~a~spDG~~~  328 (368)
T d1mdah_         264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI---------------SNGHDSDAIIAAQDGASD  328 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC---------------EEEEEECEEEECCSSSCE
T ss_pred             CCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe---------------cCCCceeEEEECCCCCEE
Confidence            223457889988876655322         25889999877544221               1124577899999997 3


Q ss_pred             E-EEe-cCCEEEEEEcCCccchhhhh
Q 013578          370 L-AAT-HGSTLQWLSVETGKVLDTAE  393 (440)
Q Consensus       370 l-~~~-~~~~i~i~d~~~~~~~~~~~  393 (440)
                      | +++ .++.|++||..+++.+..+.
T Consensus       329 ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         329 NYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             EEEEeCCCCeEEEEECCCCCEEEEEE
Confidence            3 343 37999999999999998875

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.45  E-value=3.3e-14  Score=123.43  Aligned_cols=303  Identities=13%  Similarity=0.027  Sum_probs=172.5

Q ss_pred             cccCcceeEEEEccCCCEEEEe-eCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578           88 KGHGDSVTGLCFSSDGKCLATA-CADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY  166 (440)
Q Consensus        88 ~~H~~~V~~l~~s~dg~~l~t~-s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~  166 (440)
                      ..|.-......++|||++|+.. ..+++|.++|+++.+..    .....+....+..++|+|+++++.+......  .+.
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~----~ii~iP~g~gphgi~~spdg~t~YV~~~~~~--~v~  141 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTD----KITHIPNVQAIHGLRLQKVPKTNYVFCNAEF--VIP  141 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEE----EEEECTTCCCEEEEEECCSSBCCEEEEEECS--CEE
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEe----eEEecCCCCCccceEEeccCCEEEEEeccCC--ccc
Confidence            3466667777788999998665 57889999999987532    1223556678999999999996544432211  111


Q ss_pred             eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578          167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD  246 (440)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  246 (440)
                      +-.......... .     ......++..+......+.....+..+.++|+|+..++++.....+..++..+......+.
T Consensus       142 ~~~dg~~~~~~~-~-----~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~  215 (441)
T d1qnia2         142 QPNDGTDFSLDN-S-----YTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV  215 (441)
T ss_dssp             SSCSSSCCCGGG-E-----EEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE
T ss_pred             ccCccccccccc-c-----cceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE
Confidence            110000000000 0     0000011111111112222223455667789999555555554445555554444433332


Q ss_pred             CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE-EEeCCCcEEE
Q 013578          247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRV  325 (440)
Q Consensus       247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~~~dg~i~i  325 (440)
                      ... ....+.+.++|+++.+++ ++.+.+++....+        .+..+..... ...+.++|||++++ ++..+++|.+
T Consensus       216 v~n-~p~~~~~~~dGk~~~v~~-~~v~vvd~~~~~~--------v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv  284 (441)
T d1qnia2         216 VFN-VERIAAAVKAGNFKTIGD-SKVPVVDGRGESE--------FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSV  284 (441)
T ss_dssp             EEE-HHHHHHHHHTTCCBCCTT-CCCCEEECSSSCS--------SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEE
T ss_pred             eCC-ccceEEEecCCCEEEeCC-CCcEEEEcccCCc--------eEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEE
Confidence            222 123456778999876654 6666666543322        3444444443 57899999999875 5668999999


Q ss_pred             EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc----------cchhh---
Q 013578          326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG----------KVLDT---  391 (440)
Q Consensus       326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~----------~~~~~---  391 (440)
                      ||+++............  .. ..............+|+++|..+.+.. |..|..|++...          ..+..   
T Consensus       285 ~d~~k~~~~~~~~~~~~--~~-~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v  361 (441)
T d1qnia2         285 IAIDKLDDLFEDKIELR--DT-IVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDV  361 (441)
T ss_dssp             EEGGGHHHHTTTSSCGG--GG-EEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC
T ss_pred             EEeehhhhHhhccCCcc--eE-EEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEecccc
Confidence            99986544322111100  00 000111112234568999998777654 899999997421          11111   


Q ss_pred             -hhccccCCeEEEEecCCCCCCCCCcceEEEEee
Q 013578          392 -AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS  424 (440)
Q Consensus       392 -~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~  424 (440)
                       ...+|...+.+.+++|||        ++|++++
T Consensus       362 ~y~~GH~~~~~~~t~~pdG--------k~l~s~~  387 (441)
T d1qnia2         362 QYQPGHNHASLTESRDADG--------KWLVVLS  387 (441)
T ss_dssp             SSCEEEEEETTTTSTTCCC--------CEEEEEE
T ss_pred             ccCCCCCccccccccCCCC--------cEEEecC
Confidence             124788888889999999        8999993

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=2.5e-12  Score=116.22  Aligned_cols=170  Identities=16%  Similarity=0.076  Sum_probs=111.9

Q ss_pred             eEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccc
Q 013578           95 TGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI  174 (440)
Q Consensus        95 ~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  174 (440)
                      ..+.|.+|++++..  .|+.+.+||+.++.............+...|.++.|+||+++|+.++...              
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~--------------   83 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV--------------   83 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE--------------
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCc--------------
Confidence            35789999988865  47889999999876432111112334557799999999999998775330              


Q ss_pred             ccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccE
Q 013578          175 STNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM  254 (440)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  254 (440)
                                                                    .+.--+.++.+.+||+.+++. ..+..+...+..
T Consensus        84 ----------------------------------------------~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~  116 (470)
T d2bgra1          84 ----------------------------------------------KQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQW  116 (470)
T ss_dssp             ----------------------------------------------ECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEE
T ss_pred             ----------------------------------------------ceeeeccCceEEEEECCCCcc-cccccCCccccc
Confidence                                                          011113356699999998764 556777788899


Q ss_pred             EEecCCCCeEEEEecCCCEEEEEeEecCCCceeee-eeeeeeec---------cccceEEEEEcCCCCEEEEEeCCCc-E
Q 013578          255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV-TSVMQLKG---------HKSAVTWLCFAPNSEQIITASKDGT-L  323 (440)
Q Consensus       255 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~---------h~~~v~~~~~~p~~~~l~s~~~dg~-i  323 (440)
                      +.|||||+.+|.. .++.+++|+...+........ ..-..+.+         ..+....+.|+|||++|+....|.+ +
T Consensus       117 ~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v  195 (470)
T d2bgra1         117 VTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEV  195 (470)
T ss_dssp             EEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred             cccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcC
Confidence            9999999999996 477899998765431100000 00000111         2234567889999999998876544 5


Q ss_pred             EEEec
Q 013578          324 RVWNI  328 (440)
Q Consensus       324 ~iwd~  328 (440)
                      ..|++
T Consensus       196 ~~~~~  200 (470)
T d2bgra1         196 PLIEY  200 (470)
T ss_dssp             CEEEE
T ss_pred             ceEEE
Confidence            55544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.39  E-value=1e-11  Score=112.09  Aligned_cols=79  Identities=14%  Similarity=0.177  Sum_probs=61.2

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeC---------CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEE
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACA---------DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVV  155 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~---------dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  155 (440)
                      ..|..|...|.++.|||||++|+.++.         ++.+.|||+.+++.      .....+...+..+.|+|||+.++.
T Consensus        55 ~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~------~~l~~~~~~~~~~~~SPDG~~ia~  128 (470)
T d2bgra1          55 STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL------ITEERIPNNTQWVTWSPVGHKLAY  128 (470)
T ss_dssp             TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE------CCSSCCCTTEEEEEECSSTTCEEE
T ss_pred             hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc------cccccCCccccccccccCcceeeE
Confidence            467778899999999999999998853         56789999987642      234456678899999999999998


Q ss_pred             EeecCCcceEEeeccccc
Q 013578          156 ATHNLSGCSLYMYGEEKA  173 (440)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~  173 (440)
                      ....    .+++++....
T Consensus       129 ~~~~----~l~~~~~~~g  142 (470)
T d2bgra1         129 VWNN----DIYVKIEPNL  142 (470)
T ss_dssp             EETT----EEEEESSTTS
T ss_pred             eecc----cceEEECCCC
Confidence            7543    5666665443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.39  E-value=1e-09  Score=94.83  Aligned_cols=295  Identities=14%  Similarity=0.140  Sum_probs=153.6

Q ss_pred             EEEeeC--CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccC
Q 013578          106 LATACA--DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQS  183 (440)
Q Consensus       106 l~t~s~--dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (440)
                      |+.|+.  .+.|.++.++...................+.-|+|+++++.+.++..+  ....+..+........      
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~--~~~~~~i~~~~~~~~~------   76 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK--KWSSFAVKSPTEIVHE------   76 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT--EEEEEEEEETTEEEEE------
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCC--cEEEEEEeCCCCeEEE------
Confidence            555543  456766666654433222223334555677889999999999887543  1111111111110000      


Q ss_pred             CCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee--CCceEEEEeCCC-------------Cce---eeee
Q 013578          184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS--EGTDISIWHGKT-------------GKL---LGNV  245 (440)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~vwd~~~-------------~~~---~~~~  245 (440)
                                       ........+..+.++++++..+++..  ..+.|..+....             +..   ....
T Consensus        77 -----------------~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (365)
T d1jofa_          77 -----------------ASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY  139 (365)
T ss_dssp             -----------------EEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE
T ss_pred             -----------------eeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCc
Confidence                             00011122344555667764333322  234444433211             111   1111


Q ss_pred             -eCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCc
Q 013578          246 -DTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGT  322 (440)
Q Consensus       246 -~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~  322 (440)
                       ......+.++.|+|+|+++++++. ...|.+|+....  +.......... .........++|+|++++++... .+++
T Consensus       140 ~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~--g~~~~~~~~~~-~~~g~gPr~i~f~pdg~~~yv~~e~~~~  216 (365)
T d1jofa_         140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS--GEVELVGSVDA-PDPGDHPRWVAMHPTGNYLYALMEAGNR  216 (365)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT--SCEEEEEEEEC-SSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             ccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCC--Cceeeccceee-cCCCCceEEEEECCCCceEEEeccCCCE
Confidence             112234678999999999988864 346777775432  22211111111 22345688999999999886555 6789


Q ss_pred             EEEEecCccccccCCC-Ccccc----ccccccCCCCCeeeeeeEEeCCCCCEEEEec--C-----CEEEEEEcCCccchh
Q 013578          323 LRVWNINVRYHLDEDP-KTLKV----LPIPLLDSNGATLQYDRLSLSSDGKILAATH--G-----STLQWLSVETGKVLD  390 (440)
Q Consensus       323 i~iwd~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~-----~~i~i~d~~~~~~~~  390 (440)
                      |.+|++.......... .....    .................+.++|||++|+++.  +     ..|..|++.....+.
T Consensus       217 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~  296 (365)
T d1jofa_         217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             EEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCcee
Confidence            9999987543211000 00000    0000011122233456789999999988753  1     347777765432221


Q ss_pred             hhh-----ccccCCeEEEEecC-CCCCCCCCcceEE-EEeeCCCeEEEEeCCC
Q 013578          391 TAE-----KAHEGEITCMAWAP-KTIPMGNQQVSVL-ATSSVDKKVKLWLAPS  436 (440)
Q Consensus       391 ~~~-----~~h~~~v~~v~~~~-~~~~~~~~~~~~l-~t~~~Dg~i~vw~~~~  436 (440)
                      ...     ........+++++| ++        ++| ++...++.|.+|+++.
T Consensus       297 ~~~~~~~~~~~G~~p~~i~~~p~~G--------~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         297 KQLFLSPTPTSGGHSNAVSPCPWSD--------EWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEEEEEECSSCCTTCCCEEECTTCT--------TEEEEECSSSCEEEEEEEET
T ss_pred             eEeEeeEEEcCCCCccEEEecCCCC--------CEEEEEeCCCCeEEEEEEeC
Confidence            110     11234567899998 55        555 5556789999998754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.34  E-value=3.8e-10  Score=97.58  Aligned_cols=276  Identities=13%  Similarity=0.086  Sum_probs=148.4

Q ss_pred             cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      +...+..|+|+||+++|+++.. +.+..|.+....... ..  ...........++++++++.+.+...+.....+..+.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~-~~--~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~  113 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIV-HE--ASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEE-EE--EEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeE-EE--eeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeE
Confidence            4556778999999999988765 568888887543221 11  1122345678899999998765554443333333322


Q ss_pred             ccc---ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-cee--e
Q 013578          170 EEK---AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KLL--G  243 (440)
Q Consensus       170 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~--~  243 (440)
                      ...   .....................  .       .....+..+.++|+|+.++++......|.+|+.... ...  .
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~  184 (365)
T d1jofa_         114 FYKFAGYGNVFSVSETGKLEKNVQNYE--Y-------QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG  184 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEE--C-------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred             ccCCCCcceeEeeeecceecCcccCcc--c-------CCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc
Confidence            111   100000000000000000000  0       000112356679999966666555667888876543 222  1


Q ss_pred             eee--CCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeee-----------eccccceEEEEEcC
Q 013578          244 NVD--TNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQL-----------KGHKSAVTWLCFAP  309 (440)
Q Consensus       244 ~~~--~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~-----------~~h~~~v~~~~~~p  309 (440)
                      ...  ........++|+|+++++++.. .+++|.+|++.................           ..+......+.++|
T Consensus       185 ~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp  264 (365)
T d1jofa_         185 SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF  264 (365)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred             ceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC
Confidence            111  2244578899999999887766 478899999865442221111111000           11223456789999


Q ss_pred             CCCEEEEEeC-C-----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC-CCCEEEEec--CCEEEE
Q 013578          310 NSEQIITASK-D-----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS-DGKILAATH--GSTLQW  380 (440)
Q Consensus       310 ~~~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~--~~~i~i  380 (440)
                      +|++|+++.+ +     +.|..|++.....+.      ....  .............++++| +|++|+++.  ++.|.+
T Consensus       265 dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~------~~~~--~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v  336 (365)
T d1jofa_         265 SGKYMFASSRANKFELQGYIAGFKLRDCGSIE------KQLF--LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             TSSEEEEEEEESSTTSCCEEEEEEECTTSCEE------EEEE--EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             CCCEEEEEcccCCCccceEEEEEEecCCCcee------eEeE--eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEE
Confidence            9999887643 2     237677765322110      0000  000000111234689998 899888764  689999


Q ss_pred             EEcCCc
Q 013578          381 LSVETG  386 (440)
Q Consensus       381 ~d~~~~  386 (440)
                      |++...
T Consensus       337 ~~~~~~  342 (365)
T d1jofa_         337 YRWKDE  342 (365)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            987543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=1.5e-11  Score=106.66  Aligned_cols=251  Identities=11%  Similarity=0.054  Sum_probs=150.2

Q ss_pred             ccCcceeEEEEccCCC--EEEEeeCCCc-----------------EEEEecCCCCCcceeeEEecCCCCCCCceEEEccC
Q 013578           89 GHGDSVTGLCFSSDGK--CLATACADGV-----------------IRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN  149 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~--~l~t~s~dg~-----------------v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~  149 (440)
                      .+...+..++|+|||+  |++..+.+..                 +..+|..+....    .+.  ...+.+..+.|+|+
T Consensus       113 P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~----~qI--~v~~~p~~v~~spd  186 (441)
T d1qnia2         113 PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA----WQV--IVDGNLDNTDADYT  186 (441)
T ss_dssp             TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE----EEE--EESSCCCCEEECSS
T ss_pred             CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee----EEE--ecCCCccceEECCC
Confidence            3567899999999998  5554444421                 234555544321    111  12356889999999


Q ss_pred             CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCc
Q 013578          150 ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGT  229 (440)
Q Consensus       150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  229 (440)
                      |+++++.+.+......                          +..........+..........+.++|+ ++.. +.++
T Consensus       187 Gk~a~vt~~nse~~~~--------------------------id~~t~~~~d~i~v~n~p~~~~~~~dGk-~~~v-~~~~  238 (441)
T d1qnia2         187 GKYATSTCYNSERAVD--------------------------LAGTMRNDRDWVVVFNVERIAAAVKAGN-FKTI-GDSK  238 (441)
T ss_dssp             SSEEEEEESCTTCCSS--------------------------HHHHTCSSBCEEEEEEHHHHHHHHHTTC-CBCC-TTCC
T ss_pred             CCEEEEEecCCCceEE--------------------------EeccCcceEEEEEeCCccceEEEecCCC-EEEe-CCCC
Confidence            9999988765322111                          0111111112222233344455678887 4433 4466


Q ss_pred             eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEE-EecCCCEEEEEeEecCC---CceeeeeeeeeeeccccceEEE
Q 013578          230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAA-AAFTADVKVWEIVYSKD---GLVKAVTSVMQLKGHKSAVTWL  305 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~h~~~v~~~  305 (440)
                      .+.+++....+.+..+..... ...+.++|||+++++ +..+++|.+||+....+   +.......+.-.....-.....
T Consensus       239 v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~  317 (441)
T d1qnia2         239 VPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHT  317 (441)
T ss_dssp             CCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEE
T ss_pred             cEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccc
Confidence            778887777777788877554 578999999998755 56799999999854321   0000000111101111224556


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccc-cccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578          306 CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL-PIPLLDSNGATLQYDRLSLSSDGKILAATH  374 (440)
Q Consensus       306 ~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  374 (440)
                      +|+++|..+.+...|.+|..|++................ ....+-..+|...+...+++|||+||++++
T Consensus       318 ~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         318 TFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             eecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            899999888888999999999986432211111111111 122333457888888999999999999974

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.29  E-value=2.3e-09  Score=88.85  Aligned_cols=184  Identities=16%  Similarity=0.221  Sum_probs=121.4

Q ss_pred             EeeCCceEEEEeCCCCceeeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee--eecccc
Q 013578          224 SCSEGTDISIWHGKTGKLLGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ--LKGHKS  300 (440)
Q Consensus       224 s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~h~~  300 (440)
                      ..+.++.|..++. .++....+.. .......+++.++|+++++....+.+.+++...    .     .+..  ...+..
T Consensus        88 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g----~-----~~~~~g~~~~~~  157 (279)
T d1q7fa_          88 ERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----N-----VLHKFGCSKHLE  157 (279)
T ss_dssp             ECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----C-----EEEEEECTTTCS
T ss_pred             ccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC----c-----eeeccccccccc
Confidence            3344556767765 3555555532 233456788999998888777777777776321    1     2222  234556


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEE
Q 013578          301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTL  378 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i  378 (440)
                      ....+++.++++.+++....+.|++||......        ..+     ...+.......+++.++|+++++-.  +..|
T Consensus       158 ~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~--------~~~-----g~~g~~~~P~giavD~~G~i~Vad~~~~~~v  224 (279)
T d1q7fa_         158 FPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--------RQI-----GGEGITNYPIGVGINSNGEILIADNHNNFNL  224 (279)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--------EEE-----SCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred             ccceeeeccceeEEeeeccccceeeeecCCcee--------eee-----cccccccCCcccccccCCeEEEEECCCCcEE
Confidence            788899999999888888889999999764311        111     1112223345799999999777643  4579


Q ss_pred             EEEEcCCccchhhhhc-cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCCC
Q 013578          379 QWLSVETGKVLDTAEK-AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLESS  440 (440)
Q Consensus       379 ~i~d~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~~  440 (440)
                      .+|+ .+|+.+..+.. ........|++.+++        .++ .++.+..|++|+.....++
T Consensus       225 ~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG--------~l~-V~~~n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         225 TIFT-QDGQLISALESKVKHAQCFDVALMDDG--------SVV-LASKDYRLYIYRYVQLAPV  277 (279)
T ss_dssp             EEEC-TTSCEEEEEEESSCCSCEEEEEEETTT--------EEE-EEETTTEEEEEECSCCCCT
T ss_pred             EEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCC--------cEE-EEeCCCeEEEEEeeeecCC
Confidence            9998 45776655521 123468899999997        554 4567999999999887763

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.27  E-value=8.1e-09  Score=86.86  Aligned_cols=121  Identities=12%  Similarity=0.120  Sum_probs=79.2

Q ss_pred             ceEEEEEcCCCC-----EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-c
Q 013578          301 AVTWLCFAPNSE-----QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-H  374 (440)
Q Consensus       301 ~v~~~~~~p~~~-----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~  374 (440)
                      .-+.++|+|++.     ++++-+..+.|..||+.....+..    .+.+   .............+++..+|++.++. .
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~----~~~~---~~~~~~~~~~pdGiavD~~GnlyVa~~~  245 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN----KKVW---GHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE----EEEE---EECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce----eeEE---EEccccccccceeeEEecCCcEEEEEcC
Confidence            347899998764     445556778899998764322110    0000   00001111123468999999976664 4


Q ss_pred             CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      .+.|.+||.+.++.+..+. .....+++++|.|++.       .+++|.+.+|.|...+++.
T Consensus       246 ~g~I~~~dp~~g~~~~~i~-~p~~~~t~~afg~d~~-------~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         246 SSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTK-------TIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSS-------EEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEeCCCCEEEEEEE-CCCCCEEEEEEeCCCC-------EEEEEECCCCcEEEEECCC
Confidence            7899999999888776653 4556789999999861       4778888889888888653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=5.5e-09  Score=85.54  Aligned_cols=180  Identities=8%  Similarity=0.012  Sum_probs=107.4

Q ss_pred             EEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578          222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA  301 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~  301 (440)
                      +++....+.+++++..+...+..... ......++++++++++++-..+..+..++.....    .   ...... ....
T Consensus        71 ~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~----~---~~~~~~-~~~~  141 (260)
T d1rwia_          71 YVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT----Q---TVLPFT-GLND  141 (260)
T ss_dssp             EEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS----C---EECCCC-SCCS
T ss_pred             EEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccce----e---eeeeec-ccCC
Confidence            33333444455554444444333322 2345788999999887766556666666543221    0   111111 1234


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEE
Q 013578          302 VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQW  380 (440)
Q Consensus       302 v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i  380 (440)
                      ..+++++|+++.+++...++.|..+|.........        .      .........+++.++|.++++.. .+.|..
T Consensus       142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~--------~------~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~  207 (260)
T d1rwia_         142 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--------P------FTDITAPWGIAVDEAGTVYVTEHNTNQVVK  207 (260)
T ss_dssp             CCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--------C------CSSCCSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             cceeeecCCCCEeeeccccccccccccccceeeee--------e------ccccCCCccceeeeeeeeeeeecCCCEEEE
Confidence            57899999999888888888999999875432110        0      01112245799999999877765 678888


Q ss_pred             EEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578          381 LSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL  433 (440)
Q Consensus       381 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~  433 (440)
                      ++........ +....-.....|++++++        .++++-..+++|+.++
T Consensus       208 ~~~~~~~~~~-~~~~~~~~P~~i~~d~~g--------~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         208 LLAGSTTSTV-LPFTGLNTPLAVAVDSDR--------TVYVADRGNDRVVKLT  251 (260)
T ss_dssp             ECTTCSCCEE-CCCCSCCCEEEEEECTTC--------CEEEEEGGGTEEEEEC
T ss_pred             EeCCCCeEEE-EccCCCCCeEEEEEeCCC--------CEEEEECCCCEEEEEe
Confidence            8765443222 212233567899999998        7777766677666544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=4.8e-09  Score=86.50  Aligned_cols=228  Identities=16%  Similarity=0.226  Sum_probs=127.6

Q ss_pred             ccccccCcceeEEEEccCCCEEEEeeCC-Cc--EEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578           85 NTLKGHGDSVTGLCFSSDGKCLATACAD-GV--IRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS  161 (440)
Q Consensus        85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~d-g~--v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~  161 (440)
                      +.+..+...+..-+|||||+.||-...+ +.  +.+.+......      .....+........|+|+++.++.......
T Consensus        32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~spdg~~i~~~~~~~~  105 (269)
T d2hqsa1          32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------RQVASFPRHNGAPAFSPDGSKLAFALSKTG  105 (269)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------EEEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce------eEEeeeecccccceecCCCCeeeEeeecCC
Confidence            3444567778899999999999976543 33  44444443321      222334466778889999887765543210


Q ss_pred             cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578          162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL  241 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  241 (440)
                      .                                                                  ..+..+.......
T Consensus       106 ~------------------------------------------------------------------~~~~~~~~~~~~~  119 (269)
T d2hqsa1         106 S------------------------------------------------------------------LNLYVMDLASGQI  119 (269)
T ss_dssp             S------------------------------------------------------------------CEEEEEETTTCCE
T ss_pred             c------------------------------------------------------------------cceeecccccccc
Confidence            0                                                                  0112222222222


Q ss_pred             eeeeeCCCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC
Q 013578          242 LGNVDTNQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD  320 (440)
Q Consensus       242 ~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d  320 (440)
                      ..... .........++++++.++.. ..+|...+|.......       ....+..+........|+|+++.++..+.+
T Consensus       120 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  191 (269)
T d2hqsa1         120 RQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-------APQRITWEGSQNQDADVSSDGKFMVMVSSN  191 (269)
T ss_dssp             EECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-------CCEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred             eeeee-ccccccccccccccccceecccccCCceEeeeecccc-------cceeeecccccccccccccccceeEEEeec
Confidence            22222 22233344566666655444 4566666665543331       122333455667788999999988776654


Q ss_pred             -CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec----CCEEEEEEcCCccchhhhhcc
Q 013578          321 -GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH----GSTLQWLSVETGKVLDTAEKA  395 (440)
Q Consensus       321 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~i~i~d~~~~~~~~~~~~~  395 (440)
                       +...+|.......      ....     ..   .........|||||+.|+..+    ...|+++++..+.... + ..
T Consensus       192 ~~~~~i~~~~~~~~------~~~~-----~~---~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-l-t~  255 (269)
T d2hqsa1         192 GGQQHIAKQDLATG------GVQV-----LS---STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-L-PA  255 (269)
T ss_dssp             SSCEEEEEEETTTC------CEEE-----CC---CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-C-CC
T ss_pred             CCceeeeEeecccc------cceE-----ee---cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-E-eC
Confidence             4444444332110      0000     00   111234578999999887533    3578999998776544 3 24


Q ss_pred             ccCCeEEEEecCC
Q 013578          396 HEGEITCMAWAPK  408 (440)
Q Consensus       396 h~~~v~~v~~~~~  408 (440)
                      ..+.+...+|+|-
T Consensus       256 ~~g~~~~p~WSP~  268 (269)
T d2hqsa1         256 TDGQVKFPAWSPY  268 (269)
T ss_dssp             SSSEEEEEEECCC
T ss_pred             CCCcEEeEEeCCC
Confidence            5677888999983

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.02  E-value=2.5e-08  Score=83.53  Aligned_cols=224  Identities=13%  Similarity=0.142  Sum_probs=123.8

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578           93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK  172 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~  172 (440)
                      .+..++++|||+++++...+++|..|+.....       .........+.+++|.++|+.+++..               
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-------~~~~~~~~~~~gla~~~dG~l~v~~~---------------   86 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-------QIHATVEGKVSGLAFTSNGDLVATGW---------------   86 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-------EEEEECSSEEEEEEECTTSCEEEEEE---------------
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-------EEEEcCCCCcceEEEcCCCCeEEEec---------------
Confidence            57899999999999999999988887755321       11122335678888888877444432               


Q ss_pred             ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC--Cceeeeee-CCC
Q 013578          173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT--GKLLGNVD-TNQ  249 (440)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~-~~~  249 (440)
                                                                            .++.+..|+...  +....... ...
T Consensus        87 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (302)
T d2p4oa1          87 ------------------------------------------------------NADSIPVVSLVKSDGTVETLLTLPDA  112 (302)
T ss_dssp             ------------------------------------------------------CTTSCEEEEEECTTSCEEEEEECTTC
T ss_pred             ------------------------------------------------------CCceEEEEEecccccceeeccccCCc
Confidence                                                                  222233332221  11111111 123


Q ss_pred             CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeee--eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVT--SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      .....+++.++++++++-+.++.+..++.............  ..............+.++. +.++++.+..+.|..++
T Consensus       113 ~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~  191 (302)
T d2p4oa1         113 IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIP  191 (302)
T ss_dssp             SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             cccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEecc
Confidence            34567889999988888777777776665332100000000  0000111123456666653 34455666788888888


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCcc-chhhhhccccCCeEEEEe
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGK-VLDTAEKAHEGEITCMAW  405 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~-~~~~~~~~h~~~v~~v~~  405 (440)
                      +........    ....    .    .......++++++|.++++. .++.|..++..... .+.... ..-...++++|
T Consensus       192 ~~~~~~~~~----~~~~----~----~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~-~~~~~pt~vaf  258 (302)
T d2p4oa1         192 VDSTDKPGE----PEIF----V----EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAE-QGVIGSTAVAF  258 (302)
T ss_dssp             BCTTSCBCC----CEEE----E----ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGG-GTCTTEEEEEE
T ss_pred             ccccccccc----cccc----c----CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecC-CCCCCceEEEE
Confidence            764322110    0000    0    01123469999999977765 47888888765432 222221 23456899999


Q ss_pred             c
Q 013578          406 A  406 (440)
Q Consensus       406 ~  406 (440)
                      .
T Consensus       259 g  259 (302)
T d2p4oa1         259 G  259 (302)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.01  E-value=3.2e-07  Score=77.21  Aligned_cols=234  Identities=12%  Similarity=0.075  Sum_probs=128.8

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578           92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE  171 (440)
Q Consensus        92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~  171 (440)
                      ..+..++|.++|++.++-..++.|..|+.+....     .............+++.++|+.+++...+..          
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~-----~~~~~~~~~~p~gla~~~dG~l~va~~~~~~----------  104 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-----KRPFVSHKANPAAIKIHKDGRLFVCYLGDFK----------  104 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----EEEEECSSSSEEEEEECTTSCEEEEECTTSS----------
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeE-----EEEEeCCCCCeeEEEECCCCCEEEEecCCCc----------
Confidence            3456899999999877777888888888765431     1222233355678899888876554322200          


Q ss_pred             cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC--CC
Q 013578          172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT--NQ  249 (440)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~  249 (440)
                                                                             ..+.+...+...+........  ..
T Consensus       105 -------------------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~  129 (319)
T d2dg1a1         105 -------------------------------------------------------STGGIFAATENGDNLQDIIEDLSTA  129 (319)
T ss_dssp             -------------------------------------------------------SCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             -------------------------------------------------------cceeEEEEcCCCceeeeeccCCCcc
Confidence                                                                   011122233332222221111  12


Q ss_pred             CcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE-EEeCCCcEE
Q 013578          250 LKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLR  324 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~~~dg~i~  324 (440)
                      .....+++.++|++.++-...    ..-.+|.+....  .     .+..+...-...+.++|+|+++.|+ +-+..+.|.
T Consensus       130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg--~-----~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~  202 (319)
T d2dg1a1         130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF--R-----TVTPIIQNISVANGIALSTDEKVLWVTETTANRLH  202 (319)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS--C-----CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             cCCcceeEEeccceeecccccccccCcceeEEEeccc--c-----eeEEEeeccceeeeeeeccccceEEEecccCCceE
Confidence            234567888888765553221    122344332211  0     1112222223457899999998664 555678999


Q ss_pred             EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhc-----cccC
Q 013578          325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEK-----AHEG  398 (440)
Q Consensus       325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~-----~h~~  398 (440)
                      .||+.....      ..................-..+++..+|.+.++. .++.|.+||. .|+.+..+..     ++..
T Consensus       203 ~~d~~~~g~------~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~  275 (319)
T d2dg1a1         203 RIALEDDGV------TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML  275 (319)
T ss_dssp             EEEECTTSS------SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred             EEEEcCCCc------eeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence            999863211      1100000000001111123469999999966664 5799999995 6777665531     3444


Q ss_pred             CeEEEEecCCC
Q 013578          399 EITCMAWAPKT  409 (440)
Q Consensus       399 ~v~~v~~~~~~  409 (440)
                      .+++++|.++.
T Consensus       276 ~~~~~~~~~~~  286 (319)
T d2dg1a1         276 RSTHPQFIPGT  286 (319)
T ss_dssp             BCCEEEECTTS
T ss_pred             eeeeEEEeCCC
Confidence            68899999875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.92  E-value=1.3e-07  Score=79.01  Aligned_cols=205  Identities=14%  Similarity=0.088  Sum_probs=130.7

Q ss_pred             cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578          212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS  291 (440)
Q Consensus       212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  291 (440)
                      +.+.+||+ ++++...+++|+.|+.. ++.. .+......+.+++|+++|+++++...++.+..++......    ....
T Consensus        33 iAv~pdG~-l~vt~~~~~~I~~i~p~-g~~~-~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~----~~~~  105 (302)
T d2p4oa1          33 LASAPDGT-IFVTNHEVGEIVSITPD-GNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG----TVET  105 (302)
T ss_dssp             EEECTTSC-EEEEETTTTEEEEECTT-CCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS----CEEE
T ss_pred             EEECCCCC-EEEEeCCCCEEEEEeCC-CCEE-EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc----ceee
Confidence            45688998 88888889999999865 4433 3333456788999999999999998899999988765431    1111


Q ss_pred             eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578          292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA  371 (440)
Q Consensus       292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  371 (440)
                      +... ........+++.++++++++.+.++.+..+|...+........  ...  ..............++++.+..+++
T Consensus       106 ~~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~ngi~~~~~~l~~~  180 (302)
T d2p4oa1         106 LLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH--PML--ARSNSESVFPAANGLKRFGNFLYVS  180 (302)
T ss_dssp             EEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC--GGG--SCSSTTCCSCSEEEEEEETTEEEEE
T ss_pred             cccc-CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecC--Ccc--ceeeccCcccccccccccCCceeee
Confidence            1111 2345678999999999998888888888888775432100000  000  0000111112234455554333333


Q ss_pred             EecCCEEEEEEcCCccchhhhh-ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          372 ATHGSTLQWLSVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       372 ~~~~~~i~i~d~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ....+.|+.++........... ..+......+++.+++        +++++...+++|..++...
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG--------~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG--------NLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC--------CEEEECBTTCCEEEECTTC
T ss_pred             cCCCCeEEeccccccccccccccccCCCCCcceEECCCC--------CEEEEEcCCCcEEEECCCC
Confidence            3457899888877654332211 1234456789999998        7888888889999887654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=3.2e-06  Score=69.01  Aligned_cols=174  Identities=22%  Similarity=0.193  Sum_probs=98.1

Q ss_pred             EEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578          231 ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP  309 (440)
Q Consensus       231 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  309 (440)
                      +.+.+...+... .+..+........|+|+|+.++.... ++...++.......       ................+++
T Consensus        65 ~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  136 (269)
T d2hqsa1          65 LVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-------QIRQVTDGRSNNTEPTWFP  136 (269)
T ss_dssp             EEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-------CEEECCCCSSCEEEEEECT
T ss_pred             eeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeecccccc-------cceeeeecccccccccccc
Confidence            444555544433 33344566778899999998887654 44444444433221       1222222334445566777


Q ss_pred             CCCEEE-EEeCCCcEEE--EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CC--EEEEEE
Q 013578          310 NSEQII-TASKDGTLRV--WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GS--TLQWLS  382 (440)
Q Consensus       310 ~~~~l~-s~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~--~i~i~d  382 (440)
                      ++..++ +...++...+  .++......               .............|+|+++.++...  ++  .+.+++
T Consensus       137 ~~~~~~~~~~~~g~~~i~~~~~~~~~~~---------------~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~  201 (269)
T d2hqsa1         137 DSQNLAFTSDQAGRPQVYKVNINGGAPQ---------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD  201 (269)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTSSCCE---------------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred             ccccceecccccCCceEeeeecccccce---------------eeecccccccccccccccceeEEEeecCCceeeeEee
Confidence            776544 4445555444  444432110               0011223355689999999888743  33  555566


Q ss_pred             cCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC---CCeEEEEeCCCCC
Q 013578          383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV---DKKVKLWLAPSLE  438 (440)
Q Consensus       383 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~---Dg~i~vw~~~~~~  438 (440)
                      ...+.... +  .+........|+|||        +.|+-.+.   ...|.+|+++.++
T Consensus       202 ~~~~~~~~-~--~~~~~~~~p~~SPDG--------~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         202 LATGGVQV-L--SSTFLDETPSLAPNG--------TMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             TTTCCEEE-C--CCSSSCEEEEECTTS--------SEEEEEEEETTEEEEEEEETTSCC
T ss_pred             cccccceE-e--ecCccccceEECCCC--------CEEEEEEcCCCCcEEEEEECCCCC
Confidence            66554422 2  355667888999998        66654443   3467888887654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=7.9e-08  Score=85.38  Aligned_cols=248  Identities=12%  Similarity=0.060  Sum_probs=134.4

Q ss_pred             EEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccc
Q 013578           98 CFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTN  177 (440)
Q Consensus        98 ~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  177 (440)
                      .|.+++.++.. ..||.|.+||+.++...  .++....-....+....|+||+++++......                 
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~-----------------   82 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTST--VLIEGKKIESLRAIRYEISPDREYALFSYNVE-----------------   82 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCE--EEECTTTTTTTTCSEEEECTTSSEEEEEESCC-----------------
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEE--EEEcCccccccccceeEECCCCCeEEEEEccc-----------------
Confidence            57788876654 56788999999877543  12222222234677888999999887664320                 


Q ss_pred             cccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee--eCCCCcccEE
Q 013578          178 EGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV--DTNQLKNNMA  255 (440)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~  255 (440)
                                  ..|.                               -+..+.+.++|+.+++.....  ......+...
T Consensus        83 ------------~~~r-------------------------------~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~  119 (465)
T d1xfda1          83 ------------PIYQ-------------------------------HSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYA  119 (465)
T ss_dssp             ------------CCSS-------------------------------SCCCSEEEEEESSSCCCEECCCTTCCSCCCSBC
T ss_pred             ------------ceeE-------------------------------eeccccEEEEEccCCceeeccCccCCcccccee
Confidence                        0010                               122456888999988654332  2234455668


Q ss_pred             EecCCCCeEEEEecCCCEEEEEeEecCCCceee-eeeeeeeecccc---------ceEEEEEcCCCCEEEEEeC-CCcEE
Q 013578          256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKA-VTSVMQLKGHKS---------AVTWLCFAPNSEQIITASK-DGTLR  324 (440)
Q Consensus       256 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~h~~---------~v~~~~~~p~~~~l~s~~~-dg~i~  324 (440)
                      .|||||+.||... ++.|.+.+...+....... ...-..+.|..+         .-..+.|||||++||.... +..|.
T Consensus       120 ~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~  198 (465)
T d1xfda1         120 GWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVP  198 (465)
T ss_dssp             CBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred             eeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccc
Confidence            9999999998875 6677777654332100000 000001111111         1257889999999988763 44455


Q ss_pred             EEecCcccc-ccC------CCC------------------ccccccccccCCCCCeeeeeeEEeCCCCCEEEEecC----
Q 013578          325 VWNINVRYH-LDE------DPK------------------TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG----  375 (440)
Q Consensus       325 iwd~~~~~~-~~~------~~~------------------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----  375 (440)
                      .+.+..... ...      .+.                  .......+.........-+..+.|++++++++...+    
T Consensus       199 ~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~  278 (465)
T d1xfda1         199 IMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQN  278 (465)
T ss_dssp             EEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSC
T ss_pred             eeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccc
Confidence            554432100 000      000                  000000000001112233667899999997776431    


Q ss_pred             -CEEEEEEcCCccchhhhhccccCC----eEEEEecCCC
Q 013578          376 -STLQWLSVETGKVLDTAEKAHEGE----ITCMAWAPKT  409 (440)
Q Consensus       376 -~~i~i~d~~~~~~~~~~~~~h~~~----v~~v~~~~~~  409 (440)
                       ..+.++|..+|+....+.....+-    -....|++++
T Consensus       279 ~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg  317 (465)
T d1xfda1         279 VSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDG  317 (465)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTS
T ss_pred             cceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCC
Confidence             368889999998665442222221    2345788886

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=4.6e-07  Score=73.77  Aligned_cols=196  Identities=11%  Similarity=0.016  Sum_probs=118.9

Q ss_pred             cccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578          210 SATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV  289 (440)
Q Consensus       210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  289 (440)
                      ..+.+.++|..+++..+..+.+..++...................++++++++++++....+.+++++-....       
T Consensus        17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~-------   89 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-------   89 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-------
T ss_pred             CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce-------
Confidence            3344577888555555666777777665443332222223345789999999877766555555554322111       


Q ss_pred             eeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE
Q 013578          290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI  369 (440)
Q Consensus       290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  369 (440)
                       .+.... ......++++.++++++++-..+..+..++........        ...      ........++++++|++
T Consensus        90 -~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~--------~~~------~~~~~p~~i~~~~~g~~  153 (260)
T d1rwia_          90 -TVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV--------LPF------TGLNDPDGVAVDNSGNV  153 (260)
T ss_dssp             -EECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE--------CCC------CSCCSCCEEEECTTCCE
T ss_pred             -eeeeee-eeeecccccccccceeEeeccccccccccccccceeee--------eee------cccCCcceeeecCCCCE
Confidence             122222 22457899999999887776666677777765432110        000      00112346899999997


Q ss_pred             EEEe-cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578          370 LAAT-HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL  437 (440)
Q Consensus       370 l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~  437 (440)
                      +++. .++.|..++.......... .........|++.+++        .++++....+.|..++....
T Consensus       154 ~v~~~~~~~i~~~d~~~~~~~~~~-~~~~~~p~gi~~d~~g--------~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         154 YVTDTDNNRVVKLEAESNNQVVLP-FTDITAPWGIAVDEAG--------TVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             EEEEGGGTEEEEECTTTCCEEECC-CSSCCSEEEEEECTTC--------CEEEEETTTTEEEEECTTCS
T ss_pred             eeeccccccccccccccceeeeee-ccccCCCccceeeeee--------eeeeeecCCCEEEEEeCCCC
Confidence            7764 4788999997765433322 2455667899999998        78888877888888876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.71  E-value=2.6e-05  Score=64.30  Aligned_cols=175  Identities=20%  Similarity=0.269  Sum_probs=104.2

Q ss_pred             eCCceEEEEeCCCCceeeeeeC----CCCcccEEEecCCCCeEEEEec----CCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578          226 SEGTDISIWHGKTGKLLGNVDT----NQLKNNMAAISPNGRFLAAAAF----TADVKVWEIVYSKDGLVKAVTSVMQLKG  297 (440)
Q Consensus       226 ~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~  297 (440)
                      +.++ |.++|..+++.......    ....+..+.+.|+|++.++...    .+.-.+|.+..++         +..+..
T Consensus        76 ~~~g-l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~---------~~~~~~  145 (295)
T d2ghsa1          76 SDDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK---------VTKLFA  145 (295)
T ss_dssp             ETTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE---------EEEEEE
T ss_pred             EeCc-cEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc---------EEEEee
Confidence            3444 77888887765433221    1224567889999987666543    2345667664432         112222


Q ss_pred             cccceEEEEEcCCCCEEE-EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cC
Q 013578          298 HKSAVTWLCFAPNSEQII-TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HG  375 (440)
Q Consensus       298 h~~~v~~~~~~p~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~  375 (440)
                      .-..-+.++|+++++.++ +-+..+.|..|++............      ......+.......+++..+|.+.++. ..
T Consensus       146 ~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~------~~~~~~~~~g~pdG~~vD~~GnlWva~~~~  219 (295)
T d2ghsa1         146 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE------VFIDSTGIKGGMDGSVCDAEGHIWNARWGE  219 (295)
T ss_dssp             EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE------EEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred             ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceE------EEeccCcccccccceEEcCCCCEEeeeeCC
Confidence            233457899999998654 5556788998887633211110000      001111222345678999999977665 47


Q ss_pred             CEEEEEEcCCccchhhhhccccCCeEEEEec-CCCCCCCCCcceEEEEeeC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEGEITCMAWA-PKTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~~~~~~~~~l~t~~~  425 (440)
                      +.|..||. +|+.+..+. -....+++++|- ++.      + .+++|...
T Consensus       220 g~V~~~dp-~G~~~~~i~-lP~~~~T~~~FGG~d~------~-~LyvTta~  261 (295)
T d2ghsa1         220 GAVDRYDT-DGNHIARYE-VPGKQTTCPAFIGPDA------S-RLLVTSAR  261 (295)
T ss_dssp             TEEEEECT-TCCEEEEEE-CSCSBEEEEEEESTTS------C-EEEEEEBC
T ss_pred             CceEEecC-CCcEeeEec-CCCCceEEEEEeCCCC------C-EEEEEECC
Confidence            89999995 688777764 334579999996 443      1 56666554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.65  E-value=5.9e-06  Score=68.96  Aligned_cols=212  Identities=9%  Similarity=0.017  Sum_probs=119.1

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC---CCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578           93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG---GPPTAVAFADNATSIVVATHNLSGCSLYMYG  169 (440)
Q Consensus        93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~---~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~  169 (440)
                      .-..++|.++|+.|+++...+.|...+.+.....   ... .....   ..+..+++.++|...++-....    ...+.
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~---~~~-~~~~g~~~~~pndl~~d~~G~lyvtd~~~~----~~~~~  143 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEE---IAK-KDSEGRRMQGCNDCAFDYEGNLWITAPAGE----VAPAD  143 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEE---CCS-BCTTSCBCBCCCEEEECTTSCEEEEECBCB----CTTSC
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEE---EEe-ccccccccCCCcEEEECCCCCEEEecCccC----ccccc
Confidence            3568999999998888877777888887654211   111 01111   2367899999998766532210    00000


Q ss_pred             cccccccccccccCCCCCCceeeccc-ccccceeEEEeecccccccCCCCC----eEEEEeeCCceEEEEeCCCCceee-
Q 013578          170 EEKAISTNEGKQQSKLPGPEIKWEHH-KVHDKRAILTLFGASATYGTADGS----TIIASCSEGTDISIWHGKTGKLLG-  243 (440)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~l~s~~~d~~i~vwd~~~~~~~~-  243 (440)
                      ....          .....-..|... .............+..+.+++++.    .++++-+..+.|..|++.....+. 
T Consensus       144 ~~~~----------~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~  213 (314)
T d1pjxa_         144 YTRS----------MQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN  213 (314)
T ss_dssp             CCBT----------TSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred             ccce----------eccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce
Confidence            0000          000000111111 111112222223333444555543    355666778889988875433222 


Q ss_pred             -----eeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE-EEE
Q 013578          244 -----NVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ-IIT  316 (440)
Q Consensus       244 -----~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s  316 (440)
                           .+.. .......+++..+|+++++....+.|.+||...+.        ....+......+++++|.|+++. +++
T Consensus       214 ~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~--------~~~~i~~p~~~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         214 KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ--------PKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS--------CSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             eeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE--------EEEEEECCCCCEEEEEEeCCCCEEEEE
Confidence                 1111 12234578999999988887788999999865443        23334444567899999999874 566


Q ss_pred             EeCCCcEEEEecCc
Q 013578          317 ASKDGTLRVWNINV  330 (440)
Q Consensus       317 ~~~dg~i~iwd~~~  330 (440)
                      .+.++.|...++..
T Consensus       286 ~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         286 EHENNAVWKFEWQR  299 (314)
T ss_dssp             ETTTTEEEEEECSS
T ss_pred             ECCCCcEEEEECCC
Confidence            66788888888763

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.57  E-value=1e-05  Score=67.72  Aligned_cols=196  Identities=11%  Similarity=0.083  Sum_probs=115.7

Q ss_pred             cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC--CCEEEEEeEecCCCceeee
Q 013578          212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT--ADVKVWEIVYSKDGLVKAV  289 (440)
Q Consensus       212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~  289 (440)
                      ..+.++|+ ++++-...+.|+.|+...++....+.........++++++|+++++...+  ....++.+.......    
T Consensus        45 ~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~----  119 (319)
T d2dg1a1          45 LNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL----  119 (319)
T ss_dssp             EEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC----
T ss_pred             CEECCCCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee----
Confidence            44567887 77777788899999988776655555455567889999999888765432  334455443322110    


Q ss_pred             eeeeeeeccccceEEEEEcCCCCEEEEEeCC------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKD------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                      .....-..-......+++.|+|++.++....      +.+..++.....        ...+.       ......+.++|
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~--------~~~~~-------~~~~~pnGia~  184 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--------VTPII-------QNISVANGIAL  184 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--------EEEEE-------EEESSEEEEEE
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce--------eEEEe-------eccceeeeeee
Confidence            0111111112346789999999866654321      223333332110        01000       00111346999


Q ss_pred             CCCCCEEEEec--CCEEEEEEcCCcc-chhhh------hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578          364 SSDGKILAATH--GSTLQWLSVETGK-VLDTA------EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA  434 (440)
Q Consensus       364 s~~g~~l~~~~--~~~i~i~d~~~~~-~~~~~------~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~  434 (440)
                      +|+++.|..++  .+.|+.|++.... .....      ..........+++..+|        ++.++....+.|.+|+.
T Consensus       185 s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G--------~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         185 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD--------NLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC--------CEEEEEETTTEEEEECT
T ss_pred             ccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC--------CEEEEEcCCCEEEEECC
Confidence            99998665543  7899999876432 11110      00112235679999998        78888888999999985


Q ss_pred             C
Q 013578          435 P  435 (440)
Q Consensus       435 ~  435 (440)
                      .
T Consensus       257 ~  257 (319)
T d2dg1a1         257 R  257 (319)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.38  E-value=1.7e-05  Score=64.85  Aligned_cols=98  Identities=23%  Similarity=0.294  Sum_probs=59.0

Q ss_pred             CCC--CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-CC-----CEEEEEeEecCCCce
Q 013578          215 TAD--GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TA-----DVKVWEIVYSKDGLV  286 (440)
Q Consensus       215 ~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg-----~i~i~d~~~~~~~~~  286 (440)
                      +|+  |+.++++.  ++.|.+.|+..++.. .+..+.......+|||||+.||.... ++     .|.+++...+.   .
T Consensus         7 sPdi~G~~v~f~~--~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~---~   80 (281)
T d1k32a2           7 NPDIHGDRIIFVC--CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE---I   80 (281)
T ss_dssp             EEEEETTEEEEEE--TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE---E
T ss_pred             CCCCCCCEEEEEe--CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc---e
Confidence            677  88555553  345999999987754 55556667788999999999986643 22     24444432221   1


Q ss_pred             eeee-eeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578          287 KAVT-SVMQLKGHKSAVTWLCFAPNSEQIITAS  318 (440)
Q Consensus       287 ~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~~  318 (440)
                      .... ................|+|+|+.|+...
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            1000 0001111223456789999999887653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.37  E-value=7.1e-05  Score=61.00  Aligned_cols=55  Identities=16%  Similarity=0.277  Sum_probs=38.2

Q ss_pred             EEccC--CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578           98 CFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN  159 (440)
Q Consensus        98 ~~s~d--g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~  159 (440)
                      ..|||  |+++|-.+ +|.|.+.|+.++...     + ...+.+.+...+|+|||+.|+.....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-----~-Lt~~~~~~~~p~~SPDG~~iaf~~~~   61 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-----K-IVSNLGVINNARFFPDGRKIAIRVMR   61 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-----E-EECSSSEEEEEEECTTSSEEEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-----E-EecCCCcccCEEECCCCCEEEEEEee
Confidence            45788  99988765 455777788766432     1 12334567889999999999987643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.36  E-value=0.0001  Score=60.11  Aligned_cols=150  Identities=15%  Similarity=0.139  Sum_probs=96.6

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeee--CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV  292 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  292 (440)
                      .++|. ++++....+.+.+++.. ++.+..+.  .+......+++.++++.+++....+.|++||....         .+
T Consensus       122 d~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~---------~~  190 (279)
T d1q7fa_         122 DNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---------YL  190 (279)
T ss_dssp             CTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---------EE
T ss_pred             ccCCc-EEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecCCc---------ee
Confidence            34555 55555555667777754 55555543  23445677889999998888888899999985321         22


Q ss_pred             eee--eccccceEEEEEcCCCCEEEEEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE
Q 013578          293 MQL--KGHKSAVTWLCFAPNSEQIITASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI  369 (440)
Q Consensus       293 ~~~--~~h~~~v~~~~~~p~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  369 (440)
                      ..+  .+......+|++.|+|+.+++-.. ++.|.+|+... +.+       ..+..     .........+++.++|.+
T Consensus       191 ~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G-~~~-------~~~~~-----~~~~~~p~~vav~~dG~l  257 (279)
T d1q7fa_         191 RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLI-------SALES-----KVKHAQCFDVALMDDGSV  257 (279)
T ss_dssp             EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEE-------EEEEE-----SSCCSCEEEEEEETTTEE
T ss_pred             eeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC-CEE-------EEEeC-----CCCCCCEeEEEEeCCCcE
Confidence            233  234456789999999997776544 45799998542 211       11110     011112457899999998


Q ss_pred             EEEecCCEEEEEEcCCccc
Q 013578          370 LAATHGSTLQWLSVETGKV  388 (440)
Q Consensus       370 l~~~~~~~i~i~d~~~~~~  388 (440)
                      +++..++.|++|......+
T Consensus       258 ~V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         258 VLASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEETTTEEEEEECSCCCC
T ss_pred             EEEeCCCeEEEEEeeeecC
Confidence            7777789999998876543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.6e-06  Score=76.72  Aligned_cols=153  Identities=13%  Similarity=0.183  Sum_probs=96.8

Q ss_pred             EecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-ccccceEEEEEcCCCCEEEEEe---------CCCcEEE
Q 013578          256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-GHKSAVTWLCFAPNSEQIITAS---------KDGTLRV  325 (440)
Q Consensus       256 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~---------~dg~i~i  325 (440)
                      .|.+++.++. -..+|.|.+||+..++..      .+.... -..-.+....||||+++++...         ..+.+.+
T Consensus        23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~------~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          23 KWISDTEFIY-REQKGTVRLWNVETNTST------VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CBSSSSCBCC-CCSSSCEEEBCGGGCCCE------EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             EEeCCCcEEE-EeCCCcEEEEECCCCCEE------EEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEE
Confidence            5777776654 356788999998765421      111111 1223567888999999887653         3467889


Q ss_pred             EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCC------
Q 013578          326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGE------  399 (440)
Q Consensus       326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~------  399 (440)
                      +|+.++....            +.........+....|||||+.||...++.|++.+..++...+....+..+.      
T Consensus        96 ~d~~~~~~~~------------l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~  163 (465)
T d1xfda1          96 SKIPHGDPQS------------LDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLS  163 (465)
T ss_dssp             EESSSCCCEE------------CCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEEC
T ss_pred             EEccCCceee------------ccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeecccc
Confidence            9998654211            1111112223556899999999999999999999987776554332222221      


Q ss_pred             -----------eEEEEecCCCCCCCCCcceEEEEeeC-CCeEEEEeCC
Q 013578          400 -----------ITCMAWAPKTIPMGNQQVSVLATSSV-DKKVKLWLAP  435 (440)
Q Consensus       400 -----------v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~vw~~~  435 (440)
                                 -.++.|+|||        ++||.... +..|..+.+.
T Consensus       164 d~vyeee~~~~~~a~~WSPDg--------k~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         164 DWLYEEEILKTHIAHWWSPDG--------TRLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             CHHHHHTTSSSSEEEEECTTS--------SEEEEEEEECTTSCEEEEC
T ss_pred             chhhhhhhccccceEEECCCC--------CeEEEEEecccccceeecc
Confidence                       2577899998        77776653 4556665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.14  E-value=0.00028  Score=57.84  Aligned_cols=189  Identities=11%  Similarity=0.028  Sum_probs=112.6

Q ss_pred             CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC--CCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578           91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL--PPGGPPTAVAFADNATSIVVATHNLSGCSLYMY  168 (440)
Q Consensus        91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~  168 (440)
                      ...+.++++.++|.++++ +.+| +.++|..+++..   .+....  .....+..+.+.|+|+..+.........     
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~~~---~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~-----  127 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLT---LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAET-----  127 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEE---EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCT-----
T ss_pred             CCCcEEEEEecCCCEEEE-EeCc-cEEeecccceee---EEeeeecCCCcccceeeEECCCCCEEEEeccccccc-----
Confidence            456889999999977765 4554 888898876532   111111  1122467888899988665543321000     


Q ss_pred             ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc------e-
Q 013578          169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK------L-  241 (440)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~------~-  241 (440)
                                        .....+................+....++++++.++++-+..+.|..|++....      . 
T Consensus       128 ------------------~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~  189 (295)
T d2ghsa1         128 ------------------GAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE  189 (295)
T ss_dssp             ------------------TCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred             ------------------cceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceE
Confidence                              001111111222223334444556667789998788888888999998864221      1 


Q ss_pred             -eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc-CCCCEEEE
Q 013578          242 -LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA-PNSEQIIT  316 (440)
Q Consensus       242 -~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l~s  316 (440)
                       .............+++..+|++.++.-..+.|..||.. ++        .+..+.-....+++++|- |+.+.|+.
T Consensus       190 ~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~--------~~~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         190 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GN--------HIARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CC--------EEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             EEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-Cc--------EeeEecCCCCceEEEEEeCCCCCEEEE
Confidence             11122334456788999999988777778889999842 22        344444334568999995 56555543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.89  E-value=0.0029  Score=53.85  Aligned_cols=76  Identities=7%  Similarity=0.007  Sum_probs=46.9

Q ss_pred             eeEEEEccCCCEEEEeeCCC-----------cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578           94 VTGLCFSSDGKCLATACADG-----------VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG  162 (440)
Q Consensus        94 V~~l~~s~dg~~l~t~s~dg-----------~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~  162 (440)
                      +.......+|+.++.|+.+.           .+.+||..++.-...  .....++.......++.++++.++.++.+.  
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~--~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~--   97 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR--TVTVTKHDMFCPGISMDGNGQIVVTGGNDA--   97 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC--EEEECSCCCSSCEEEECTTSCEEEECSSST--
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec--CCCCCCcccceeEEEEecCCcEEEeecCCC--
Confidence            34445556889888887531           367899987654322  222333444456778999999888876653  


Q ss_pred             ceEEeeccccc
Q 013578          163 CSLYMYGEEKA  173 (440)
Q Consensus       163 ~~~~~~~~~~~  173 (440)
                      ..+.+++....
T Consensus        98 ~~~~~yd~~~~  108 (387)
T d1k3ia3          98 KKTSLYDSSSD  108 (387)
T ss_dssp             TCEEEEEGGGT
T ss_pred             cceeEecCccC
Confidence            34555555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.58  E-value=0.0028  Score=53.16  Aligned_cols=152  Identities=9%  Similarity=0.063  Sum_probs=82.7

Q ss_pred             eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC---------------CEEEEEeEecC----CCceeee-
Q 013578          230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA---------------DVKVWEIVYSK----DGLVKAV-  289 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------------~i~i~d~~~~~----~~~~~~~-  289 (440)
                      .+.++|..+.+...++.... ....+.++++|+++++.+.+.               .+.++++....    .+..... 
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            36677888887776665533 456789999999999887542               14444431000    0000000 


Q ss_pred             -------------eeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCe
Q 013578          290 -------------TSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT  355 (440)
Q Consensus       290 -------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (440)
                                   ..+..+. -......+.++|||+++++++ .+.++.++|++.-..........+..  .... ....
T Consensus       253 gV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~--~~~e-~elg  328 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA--VVAE-PELG  328 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG--EEEC-CBCC
T ss_pred             CceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc--EEee-cccC
Confidence                         0111111 122356789999999987666 68899999998544332111110000  0000 0011


Q ss_pred             eeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCc
Q 013578          356 LQYDRLSLSSDGKILAAT-HGSTLQWLSVETG  386 (440)
Q Consensus       356 ~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~  386 (440)
                      ..-...+|+..|....+- -|..|.-|++...
T Consensus       329 lgPLht~fd~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         329 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             cCccccccCCCceEEEEeeccceEEEEecchh
Confidence            112346788877533333 3999999998543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.55  E-value=0.0059  Score=51.15  Aligned_cols=204  Identities=12%  Similarity=0.009  Sum_probs=113.1

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-CCcccEEEec--CCCCeEEEEecCC-------C-----------E
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-QLKNNMAAIS--PNGRFLAAAAFTA-------D-----------V  273 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s--~~~~~l~~~~~dg-------~-----------i  273 (440)
                      ..||+++++.-..+..|.+.|+.+.++.+.+... ...+..+...  |+..+++.++.+.       .           +
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence            4578877888888999999999999886644432 2334555554  4556776666522       1           3


Q ss_pred             EEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC---------------cEEEEecCccccccCCC
Q 013578          274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG---------------TLRVWNINVRYHLDEDP  338 (440)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~  338 (440)
                      .++|....+        ...+.. -.+....++++|+|+++++.+.+.               .+.+++...........
T Consensus       176 t~ID~~tm~--------V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         176 TAVDADKWE--------VAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             EEEETTTTE--------EEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             EEEecCCce--------EEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence            344432221        111111 123456789999999998877542               13344432111000000


Q ss_pred             -----CccccccccccCCCC------CeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchh--------hh--hcc
Q 013578          339 -----KTLKVLPIPLLDSNG------ATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLD--------TA--EKA  395 (440)
Q Consensus       339 -----~~~~~~~~~~~~~~~------~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~--------~~--~~~  395 (440)
                           .....+.........      -......+.++|||++++++.  +..+.++|++.-..+.        .+  +..
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             CcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                 000000000000000      001123689999999999876  7999999986432221        11  011


Q ss_pred             ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578          396 HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP  435 (440)
Q Consensus       396 h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~  435 (440)
                      ..-.-..-+|...|        .-..|---|..|--|++.
T Consensus       327 lglgPLht~fd~~g--------~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         327 LGLGPLHTAFDGRG--------NAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CCSCEEEEEECTTS--------EEEEEETTTTEEEEEEHH
T ss_pred             cCcCccccccCCCc--------eEEEEeeccceEEEEecc
Confidence            22345667788876        666777789999999974

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.33  E-value=0.035  Score=46.83  Aligned_cols=79  Identities=11%  Similarity=0.064  Sum_probs=48.9

Q ss_pred             cCcceeEEEEccCCCEEEEeeCC-CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc---ceE
Q 013578           90 HGDSVTGLCFSSDGKCLATACAD-GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG---CSL  165 (440)
Q Consensus        90 H~~~V~~l~~s~dg~~l~t~s~d-g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~---~~~  165 (440)
                      |.....+.++.+||++++.|+.+ ..+.+||..+..-.   .. ........-...+..+|++.++.++.....   ..+
T Consensus        74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~---~~-~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v  149 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI---PG-PDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNG  149 (387)
T ss_dssp             CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE---EC-CCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCE
T ss_pred             cccceeEEEEecCCcEEEeecCCCcceeEecCccCccc---cc-ccccccccccceeeecCCceeeecccccccccccee
Confidence            33344567888999999998765 58999998765421   11 111222334567788899988888754322   234


Q ss_pred             Eeecccc
Q 013578          166 YMYGEEK  172 (440)
Q Consensus       166 ~~~~~~~  172 (440)
                      ..++...
T Consensus       150 ~~yd~~~  156 (387)
T d1k3ia3         150 EVYSPSS  156 (387)
T ss_dssp             EEEETTT
T ss_pred             eeecCCC
Confidence            5555444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.03  Score=44.36  Aligned_cols=184  Identities=8%  Similarity=-0.075  Sum_probs=103.7

Q ss_pred             EEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578          222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS  300 (440)
Q Consensus       222 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  300 (440)
                      +.+-..++.|+..++........+......+..++++.-+..|+.+. ..+.|.+.++....        ..........
T Consensus        51 ywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~--------~~~l~~~~l~  122 (263)
T d1npea_          51 YWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--------RRVLFDTGLV  122 (263)
T ss_dssp             EEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CEEEECSSCS
T ss_pred             EEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce--------EEEEeccccc
Confidence            33444456677777664444333433334578899987666666554 46678888875332        1111222335


Q ss_pred             ceEEEEEcCCCCEEEEEeC-CCcEEEE--ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C
Q 013578          301 AVTWLCFAPNSEQIITASK-DGTLRVW--NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G  375 (440)
Q Consensus       301 ~v~~~~~~p~~~~l~s~~~-dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~  375 (440)
                      .+..++++|...+|+-... .+..+||  ++.....        ..+    ..  ........+++.+.+..|...+  .
T Consensus       123 ~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--------~~i----~~--~~~~~P~glaiD~~~~~lYw~d~~~  188 (263)
T d1npea_         123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--------RIL----AQ--DNLGLPNGLTFDAFSSQLCWVDAGT  188 (263)
T ss_dssp             SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--------EEE----EC--TTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--------eee----ee--ecccccceEEEeecCcEEEEEeCCC
Confidence            6789999997776664432 2233444  4432211        000    00  0111235789988877665543  6


Q ss_pred             CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +.|...+.........+ .+ .....+|++..+         .+..|-...+.|...+..+++
T Consensus       189 ~~I~~~~~~g~~~~~v~-~~-~~~P~~lav~~~---------~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         189 HRAECLNPAQPGRRKVL-EG-LQYPFAVTSYGK---------NLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             TEEEEEETTEEEEEEEE-EC-CCSEEEEEEETT---------EEEEEETTTTEEEEEETTTTE
T ss_pred             CEEEEEECCCCCeEEEE-CC-CCCcEEEEEECC---------EEEEEECCCCEEEEEECCCCc
Confidence            78888888765543333 22 223567888643         566665567788888877654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.04  Score=43.56  Aligned_cols=160  Identities=13%  Similarity=0.010  Sum_probs=85.6

Q ss_pred             eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC-CCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578          226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT-ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW  304 (440)
Q Consensus       226 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (440)
                      ...+.|.+.++........+.........++++|...+++..... +..+|+........      ........-....+
T Consensus        98 ~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~------~~~i~~~~~~~P~g  171 (263)
T d1npea_          98 SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN------RRILAQDNLGLPNG  171 (263)
T ss_dssp             TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC------CEEEECTTCSCEEE
T ss_pred             cCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC------ceeeeeecccccce
Confidence            334456666655333222222223456788999977777765433 34456655432211      11111222345689


Q ss_pred             EEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEE
Q 013578          305 LCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWL  381 (440)
Q Consensus       305 ~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~  381 (440)
                      |++.+.++.|+-+ ...+.|...|+......        .    +.....+.   ..+++.  +..|...  ..+.|...
T Consensus       172 laiD~~~~~lYw~d~~~~~I~~~~~~g~~~~--------~----v~~~~~~P---~~lav~--~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--------K----VLEGLQYP---FAVTSY--GKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEE--------E----EEECCCSE---EEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             EEEeecCcEEEEEeCCCCEEEEEECCCCCeE--------E----EECCCCCc---EEEEEE--CCEEEEEECCCCEEEEE
Confidence            9999877766554 46778988888754321        0    01111111   245554  3344433  46888888


Q ss_pred             EcCCccchhhhhccccCCeEEEEecCC
Q 013578          382 SVETGKVLDTAEKAHEGEITCMAWAPK  408 (440)
Q Consensus       382 d~~~~~~~~~~~~~h~~~v~~v~~~~~  408 (440)
                      |..+++.+..+..........++..++
T Consensus       235 ~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         235 DLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             ETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             ECCCCccceEECCCCCCCcceEEEeCC
Confidence            988888766553333344555555443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.86  E-value=0.086  Score=45.17  Aligned_cols=110  Identities=13%  Similarity=0.101  Sum_probs=64.1

Q ss_pred             cCCCCCeEEEEeeCC----ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC----------------CCE
Q 013578          214 GTADGSTIIASCSEG----TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT----------------ADV  273 (440)
Q Consensus       214 ~~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------g~i  273 (440)
                      .+|+++.++++-+.+    ..|+++|+.+++.+...- .......++|.+|++.|+....+                ..|
T Consensus       132 ~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v  210 (430)
T d1qfma1         132 FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL  210 (430)
T ss_dssp             ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred             ecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceE
Confidence            379999777665544    469999999998764221 12223568999999988765432                135


Q ss_pred             EEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe---CCCcEEEEec
Q 013578          274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS---KDGTLRVWNI  328 (440)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~---~dg~i~iwd~  328 (440)
                      ..+.+.....    .-..+.........+..+..++++++++...   .+....+|-+
T Consensus       211 ~~h~lgt~~~----~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         211 YYHVLGTDQS----EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             EEEETTSCGG----GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             EEEECCCCcc----ccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence            5555543321    1112222222234567788899999876433   2334445543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.63  E-value=0.11  Score=41.07  Aligned_cols=190  Identities=11%  Similarity=0.142  Sum_probs=113.0

Q ss_pred             CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578          215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ  294 (440)
Q Consensus       215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  294 (440)
                      .|... .++.-+ ..++.++|+++.+.++.+...+ +|.-=.|-.+ +.|+..+ +..|+-|++.... .      +...
T Consensus        71 hP~~~-IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s-~------P~k~  138 (327)
T d1utca2          71 NPASK-VIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGES-Q------PVKM  138 (327)
T ss_dssp             CSSSS-EEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSS-SEEEEEC-SSEEEEEESSSSC-C------CEEE
T ss_pred             CCCCc-EEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCC-CEEEEEc-CCceEEEcccCCC-C------chhh
Confidence            45554 555444 5679999999999998887765 4444455433 4455554 5679999984322 1      2333


Q ss_pred             eecc----ccceEEEEEcCCCCEEEEEe---C----CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578          295 LKGH----KSAVTWLCFAPNSEQIITAS---K----DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL  363 (440)
Q Consensus       295 ~~~h----~~~v~~~~~~p~~~~l~s~~---~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  363 (440)
                      +..|    ...|..-..++++++++..+   .    .|.+.+|..+.+...               ...+|...+..+.+
T Consensus       139 fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ---------------~ieGhaa~F~~~~~  203 (327)
T d1utca2         139 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------------PIEGHAASFAQFKM  203 (327)
T ss_dssp             EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE---------------EECCSEEEEEEECC
T ss_pred             hhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc---------------cccceeeeeEEEEc
Confidence            3333    35688888899999876544   2    356788888754221               12244443333333


Q ss_pred             CCCC---CEEEEec----CCEEEEEEcCCccc-hhh-------hh---ccccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578          364 SSDG---KILAATH----GSTLQWLSVETGKV-LDT-------AE---KAHEGEITCMAWAPKTIPMGNQQVSVLATSSV  425 (440)
Q Consensus       364 s~~g---~~l~~~~----~~~i~i~d~~~~~~-~~~-------~~---~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~  425 (440)
                      .-+.   .+++.+.    .+.+++.++..... -..       +.   ..-.+-..++..++..        .++..-+.
T Consensus       204 ~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ky--------giiyviTK  275 (327)
T d1utca2         204 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH--------DVVFLITK  275 (327)
T ss_dssp             TTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTT--------TEEEEEET
T ss_pred             CCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccC--------CEEEEEec
Confidence            2221   1333322    47899998865321 011       10   1123445666666665        67888888


Q ss_pred             CCeEEEEeCCCCCC
Q 013578          426 DKKVKLWLAPSLES  439 (440)
Q Consensus       426 Dg~i~vw~~~~~~~  439 (440)
                      -|.|.+||+.++.+
T Consensus       276 ~G~i~lyDleTgt~  289 (327)
T d1utca2         276 YGYIHLYDLETGTC  289 (327)
T ss_dssp             TSEEEEEETTTCCE
T ss_pred             CcEEEEEEcccccE
Confidence            99999999999864

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.49  E-value=0.13  Score=40.52  Aligned_cols=182  Identities=12%  Similarity=0.139  Sum_probs=98.1

Q ss_pred             ceEEEEeCCC-CceeeeeeCCC----CcccEEEecCCCCeEEEEe-------cCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578          229 TDISIWHGKT-GKLLGNVDTNQ----LKNNMAAISPNGRFLAAAA-------FTADVKVWEIVYSKDGLVKAVTSVMQLK  296 (440)
Q Consensus       229 ~~i~vwd~~~-~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~  296 (440)
                      ..|+-|+++. ..+.+.+..|.    ..|-....+++.++++..+       -.|.+.+|.....         ..+.+.
T Consensus       122 taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~---------~sQ~ie  192 (327)
T d1utca2         122 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---------VSQPIE  192 (327)
T ss_dssp             SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT---------EEEEEC
T ss_pred             CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC---------cCcccc
Confidence            3499999853 24555555432    3455567788899887654       2366788876433         345566


Q ss_pred             ccccceEEEEEcCCC---CEEEEEe---CCCcEEEEecCcccc-ccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-
Q 013578          297 GHKSAVTWLCFAPNS---EQIITAS---KDGTLRVWNINVRYH-LDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-  368 (440)
Q Consensus       297 ~h~~~v~~~~~~p~~---~~l~s~~---~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-  368 (440)
                      ||-+.-..+.+.-+.   ..|+.+.   ..+.+.|-++..... .....+  +..............+| ++..|+.-. 
T Consensus       193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~k--k~vdi~fppea~~DFPv-amqvs~kygi  269 (327)
T d1utca2         193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK--KAVDVFFPPEAQNDFPV-AMQISEKHDV  269 (327)
T ss_dssp             CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCC--EEEECCCCTTCTTCCEE-EEEEETTTTE
T ss_pred             ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcc--eeEEEECCccccCCcEE-EEEeeccCCE
Confidence            776555444443211   2333222   235788888765321 111111  11111111111223333 466666544 


Q ss_pred             EEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEE
Q 013578          369 ILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL  431 (440)
Q Consensus       369 ~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~v  431 (440)
                      ..+....|.+++||++++.++..- +--.+.|...+-+.+.        .=++....+|.|.-
T Consensus       270 iyviTK~G~i~lyDleTgt~i~~n-RIs~~~iF~~a~~~~~--------~Gi~~VNr~GqVl~  323 (327)
T d1utca2         270 VFLITKYGYIHLYDLETGTCIYMN-RISGETIFVTAPHEAT--------AGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEEETTT--------TEEEEEETTSEEEE
T ss_pred             EEEEecCcEEEEEEcccccEEEEe-ecCCCceEEeccCCCC--------ceEEEECCCCeEEE
Confidence            445567899999999999988765 2345566544444432        23445556776643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.46  E-value=0.11  Score=42.61  Aligned_cols=200  Identities=15%  Similarity=0.192  Sum_probs=104.9

Q ss_pred             EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEe------cCCCCeEEEEecC--C--CEEEEEeEecCCCceeeee
Q 013578          221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI------SPNGRFLAAAAFT--A--DVKVWEIVYSKDGLVKAVT  290 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~~d--g--~i~i~d~~~~~~~~~~~~~  290 (440)
                      +++.....+-|++||+. |+.+..+..  +.+.-+..      .....-+++++..  +  .|.+|.+.... .......
T Consensus        42 lI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~-~~l~~~~  117 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-GTLQSIT  117 (353)
T ss_dssp             EEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT-TEEEECS
T ss_pred             EEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc-ccccccc
Confidence            55555666669999986 888877653  33443332      2233345666532  3  47778775322 1111100


Q ss_pred             ee-eeeeccccceEEEEE--cCC-CC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578          291 SV-MQLKGHKSAVTWLCF--APN-SE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS  365 (440)
Q Consensus       291 ~~-~~~~~h~~~v~~~~~--~p~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  365 (440)
                      .. .....-...+..+++  +|. +. +++....+|.+..|.+.............+.+..        ...+..|.+..
T Consensus       118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~--------~~q~EGCVvDd  189 (353)
T d1h6la_         118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM--------NSQTEGMAADD  189 (353)
T ss_dssp             CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC--------SSCEEEEEEET
T ss_pred             ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC--------CCccceEEEeC
Confidence            00 001111124666666  664 44 4566778899998887532110000111111111        12466788988


Q ss_pred             CCCEEEEec-CCEEEEEEcCCc-----cchhhhhc-cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578          366 DGKILAATH-GSTLQWLSVETG-----KVLDTAEK-AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS  436 (440)
Q Consensus       366 ~g~~l~~~~-~~~i~i~d~~~~-----~~~~~~~~-~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~  436 (440)
                      ....|..+. +..+..++....     ..+..... ...+.+..|+.-...    ++++.+|+|.-.|++..||+...
T Consensus       190 e~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~----~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         190 EYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAA----DGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             TTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECG----GGCEEEEEEEGGGTEEEEEESST
T ss_pred             CCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcC----CCCeEEEEEcCCCCeEEEEecCC
Confidence            888777775 566666665422     22212111 134567778765432    02225566666689999999865

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.15  Score=40.26  Aligned_cols=101  Identities=14%  Similarity=0.011  Sum_probs=57.5

Q ss_pred             EeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-eccccce
Q 013578          224 SCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-KGHKSAV  302 (440)
Q Consensus       224 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~h~~~v  302 (440)
                      +....+.|.+.++........+.........++++|...+|+.......-+|+.......       ....+ ...-...
T Consensus        94 ~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-------~~~~l~~~~~~~p  166 (266)
T d1ijqa1          94 TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------DIYSLVTENIQWP  166 (266)
T ss_dssp             EETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------CEEEEECSSCSCE
T ss_pred             EecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC-------ceeccccccccee
Confidence            334445677777664444444444445567889998766666654333323444332221       11112 2223456


Q ss_pred             EEEEEcCCCCEEEEE-eCCCcEEEEecCcc
Q 013578          303 TWLCFAPNSEQIITA-SKDGTLRVWNINVR  331 (440)
Q Consensus       303 ~~~~~~p~~~~l~s~-~~dg~i~iwd~~~~  331 (440)
                      .++++.+.+..|+-+ ...+.|...++...
T Consensus       167 ~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         167 NGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence            899999877766655 55678888888643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.37  E-value=0.17  Score=45.19  Aligned_cols=54  Identities=9%  Similarity=-0.060  Sum_probs=34.5

Q ss_pred             CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      |.|.-||..+|+.+....  +..++..=..+..+        .+++.|+.||.++-+|..++|.
T Consensus       453 G~l~A~D~~TG~~~W~~~--~~~~~~gg~lsTag--------glVF~G~~Dg~l~A~Da~TGe~  506 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM--ERFAVWGGTMATAG--------DLVFYGTLDGYLKARDSDTGDL  506 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE--ESSCCCSBCEEETT--------TEEEEECTTSEEEEEETTTCCE
T ss_pred             ceEEEEeCCCCceecccC--CCCCCccceeEecC--------CEEEEECCCCeEEEEECCCCcE
Confidence            456777777777665542  22222221122223        4788899999999999999873

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.29  E-value=0.34  Score=43.01  Aligned_cols=53  Identities=13%  Similarity=-0.031  Sum_probs=33.2

Q ss_pred             CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      |.|.-+|..+|+.+.+..  +..+..+-.....+        .++++|+.||.++-+|.+++|
T Consensus       444 G~l~AiD~~TG~~~W~~~--~~~~~~~g~l~Tag--------glVf~G~~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKW--EKFAAWGGTLYTKG--------GLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEEEEECTTTCCEEEEEE--ESSCCCSBCEEETT--------TEEEEECTTSEEEEEETTTCC
T ss_pred             ccEEEeccCCCceeeEcC--CCCCCCcceeEecC--------CEEEEECCCCeEEEEECCCCc
Confidence            356677777777766543  22211111111112        478889999999999999987

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.10  E-value=0.31  Score=43.18  Aligned_cols=54  Identities=7%  Similarity=-0.056  Sum_probs=35.9

Q ss_pred             CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      |.|.-+|+.+|+.+.+..  ...+...-...-.+        .+++.|+.||.++-+|..++|.
T Consensus       438 G~l~A~D~~tGk~~W~~~--~~~~~~gg~l~Tag--------glVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAG--------NLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             EEEEEEETTTTEEEEEEE--ESSSCCCCEEEETT--------TEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEeCCCCeEeeecc--CCCCCCCceeEECC--------CEEEEECCCCcEEEEECCCCcE
Confidence            457778888888777653  22222221122222        4788899999999999999873

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.67  E-value=0.52  Score=40.03  Aligned_cols=65  Identities=20%  Similarity=0.216  Sum_probs=42.5

Q ss_pred             ccCcceeEEEEccCCCEEEEe-eC----CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578           89 GHGDSVTGLCFSSDGKCLATA-CA----DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN  159 (440)
Q Consensus        89 ~H~~~V~~l~~s~dg~~l~t~-s~----dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~  159 (440)
                      ++.-.+..+++|||++++|.+ +.    -.+|++.|+.+++.....+..      .....++|.+|++.|+....+
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~------~~~~~~~W~~D~~~~~Y~~~~  191 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER------VKFSCMAWTHDGKGMFYNAYP  191 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE------ECSCCEEECTTSSEEEEEECC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc------ccccceEEcCCCCEEEEEEec
Confidence            444456678899999998843 22    346999999987632211111      223578999999987765433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.51  E-value=0.49  Score=38.63  Aligned_cols=94  Identities=11%  Similarity=0.042  Sum_probs=52.3

Q ss_pred             CceEEEEeCCCCc-ee---eeeeCC-CCcccEEEecCCCCeEEEEec---------------CCCEEEEEeEecCCCcee
Q 013578          228 GTDISIWHGKTGK-LL---GNVDTN-QLKNNMAAISPNGRFLAAAAF---------------TADVKVWEIVYSKDGLVK  287 (440)
Q Consensus       228 d~~i~vwd~~~~~-~~---~~~~~~-~~~v~~~~~s~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~  287 (440)
                      ..+|.+|++.... .+   ..+... ....+.+++..++.++++-..               -+...+|..+...     
T Consensus       123 ~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~-----  197 (340)
T d1v04a_         123 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND-----  197 (340)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC-----
T ss_pred             CceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc-----
Confidence            4457776654322 11   222211 233566777777877776311               1234455543322     


Q ss_pred             eeeeeeeeeccccceEEEEEcCCCCEEEEE-eCCCcEEEEecCc
Q 013578          288 AVTSVMQLKGHKSAVTWLCFAPNSEQIITA-SKDGTLRVWNINV  330 (440)
Q Consensus       288 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-~~dg~i~iwd~~~  330 (440)
                          .......-...+.|+++|++++|+.+ +..+.|+.|++..
T Consensus       198 ----~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         198 ----VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             ----EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ----eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence                11222233567899999999876554 5678899999874

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.31  E-value=0.17  Score=43.50  Aligned_cols=61  Identities=11%  Similarity=0.086  Sum_probs=35.9

Q ss_pred             CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC
Q 013578          250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN  310 (440)
Q Consensus       250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~  310 (440)
                      ....+++|.|+|++|++--..|+|++++...+..........+.....-++....|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3567999999999887764578888876443321111110011111122456789999995

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.64  Score=36.36  Aligned_cols=159  Identities=10%  Similarity=-0.056  Sum_probs=92.5

Q ss_pred             CCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe--CCCcEEE
Q 013578          249 QLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS--KDGTLRV  325 (440)
Q Consensus       249 ~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~--~dg~i~i  325 (440)
                      ...+..+++.+.+..|+... ..+.|.+.++....        ....+.........++++|...+|+-..  ..+.|..
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~--------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r  147 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK  147 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCce--------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeE
Confidence            34567789988666666654 45678888875332        2222333445678999999665555443  3345666


Q ss_pred             EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhh-ccccCCeEE
Q 013578          326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAE-KAHEGEITC  402 (440)
Q Consensus       326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~-~~h~~~v~~  402 (440)
                      .++.....        ..    +..  ........+++.+.+..|..++  .+.|...++.......... ........+
T Consensus       148 ~~~dGs~~--------~~----l~~--~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~  213 (266)
T d1ijqa1         148 GGLNGVDI--------YS----LVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS  213 (266)
T ss_dssp             EETTSCCE--------EE----EEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEE
T ss_pred             eccCCCce--------ec----ccc--cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEE
Confidence            66653211        00    000  0112245788988877666543  6789888886544322221 112235677


Q ss_pred             EEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          403 MAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       403 v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      +++..+         .++.+-..++.|...+..+++
T Consensus       214 lav~~~---------~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         214 LAVFED---------KVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EEEETT---------EEEEEETTTTEEEEEETTTCC
T ss_pred             EEEECC---------EEEEEECCCCeEEEEECCCCc
Confidence            888754         566666677888877776654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.64  E-value=0.48  Score=40.51  Aligned_cols=66  Identities=15%  Similarity=0.092  Sum_probs=41.9

Q ss_pred             cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe---cCCCCCCCceEEEccC
Q 013578           84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI---NLPPGGPPTAVAFADN  149 (440)
Q Consensus        84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~~~  149 (440)
                      +..+-..-+.-++|+|.|||++|++--.+|.|++++..++.......+..   ...-++....|+|+|+
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34444344678899999999988887567999998877654332111100   1112345678999985

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.22  E-value=0.55  Score=41.50  Aligned_cols=43  Identities=14%  Similarity=0.125  Sum_probs=26.9

Q ss_pred             CCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          367 GKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       367 g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      |.++..|+ |+.++.||.++|+.+.++..+....-.-+.+..+|
T Consensus       469 gglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dG  512 (560)
T d1kv9a2         469 GNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG  512 (560)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             CCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            44444554 89999999999999987643322211224454555

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.98  E-value=0.48  Score=42.05  Aligned_cols=26  Identities=15%  Similarity=0.237  Sum_probs=22.2

Q ss_pred             CCCEEEEEeCCCcEEEEecCcccccc
Q 013578          310 NSEQIITASKDGTLRVWNINVRYHLD  335 (440)
Q Consensus       310 ~~~~l~s~~~dg~i~iwd~~~~~~~~  335 (440)
                      .+.+++.|+.||.++.+|.++++.+.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW  512 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLW  512 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeE
Confidence            56778889999999999999987764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.96  E-value=1.4  Score=39.03  Aligned_cols=45  Identities=11%  Similarity=0.187  Sum_probs=29.7

Q ss_pred             CCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578          365 SDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       365 ~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      ..|.++..|+ |+.++.+|.++|+.+.++..+....-.=+.|..+|
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G  540 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG  540 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            4455555555 99999999999999987753332222225666665

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.49  E-value=0.66  Score=41.10  Aligned_cols=54  Identities=15%  Similarity=0.063  Sum_probs=37.3

Q ss_pred             CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      |.+.-||..+|+.+.+..  +..+...=...-.+        .+|++|+.||.++.+|..++|.
T Consensus       457 G~l~AiD~~tGk~~W~~~--~~~p~~gg~lstag--------glVF~G~~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAG--------NVVFQGTADGRLVAYHAATGEK  510 (573)
T ss_dssp             EEEEEEETTTTEEEEEEE--ESSSCCCCEEEETT--------TEEEEECTTSEEEEEETTTCCE
T ss_pred             ccEEEeCCCCCceEeeec--CCCCCCCceEEEcC--------CEEEEECCCCeEEEEECCCCcE
Confidence            578889999999887764  22222211122233        4888899999999999999873

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.31  E-value=2.1  Score=37.66  Aligned_cols=204  Identities=8%  Similarity=-0.024  Sum_probs=101.7

Q ss_pred             EEEEee-CCceEEEEeCC-CCceeeeeeCCCCc----c-------cEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee
Q 013578          221 IIASCS-EGTDISIWHGK-TGKLLGNVDTNQLK----N-------NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK  287 (440)
Q Consensus       221 ~l~s~~-~d~~i~vwd~~-~~~~~~~~~~~~~~----v-------~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  287 (440)
                      .++.++ .++.|.-.|.. +|+.+-++......    .       +.+++.  +..++.++.||.+.-.|..+++    .
T Consensus        64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~----~  137 (571)
T d2ad6a1          64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGK----I  137 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCC----E
T ss_pred             EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhh----h
Confidence            344444 46778888874 69888776422111    0       112332  3467778888888877776654    1


Q ss_pred             eeeeeeeeeccc-cceEEEEEcCCCCEEEEEe------CCCcEEEEecCccccccCCCCcccc-----------------
Q 013578          288 AVTSVMQLKGHK-SAVTWLCFAPNSEQIITAS------KDGTLRVWNINVRYHLDEDPKTLKV-----------------  343 (440)
Q Consensus       288 ~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~-----------------  343 (440)
                      .+.. .....+. ..+++--.-.++. ++.+.      .+|.|+-+|+++++.+.........                 
T Consensus       138 ~w~~-~~~~~~~~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~  215 (571)
T d2ad6a1         138 NWEV-EVCDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG  215 (571)
T ss_dssp             EEEE-ECCCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             hccc-cccccccccceeecCeEeCCe-EEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccC
Confidence            1100 0000011 1111100011333 44443      3678999999988776421110000                 


Q ss_pred             --------ccccccCCCCCeeeeeeEEeCCCCCEEEEec-----------------CCEEEEEEcCCccchhhhhccccC
Q 013578          344 --------LPIPLLDSNGATLQYDRLSLSSDGKILAATH-----------------GSTLQWLSVETGKVLDTAEKAHEG  398 (440)
Q Consensus       344 --------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------------~~~i~i~d~~~~~~~~~~~~~h~~  398 (440)
                              .........+. ......++.+...++..+.                 ...+.-.|.++|+.+..+...|.+
T Consensus       216 ~~~~~~~~~~~~~~~~~gg-~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D  294 (571)
T d2ad6a1         216 QFGLGTKTWEGDAWKIGGG-TNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD  294 (571)
T ss_dssp             CSSHHHHTSSTTGGGGCCC-CCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred             cccccccccCCcccccCCC-ccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcc
Confidence                    00000001111 1123456666666554421                 246788899999987666422221


Q ss_pred             --------CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          399 --------EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       399 --------~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                              ...-.....++     .....++.++.+|.+.+.|..++|
T Consensus       295 ~Wd~D~~~~~~l~~~~~~g-----~~~~~v~~~~k~G~l~vlDr~tG~  337 (571)
T d2ad6a1         295 EWDFAGVNQMVLTDQPVNG-----KMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             SSCCCCCCCCEEEEEEETT-----EEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccccccceeeeeccC-----ccccceeeccccceEEEEecCCCc
Confidence                    11111121222     112467888899999999999886

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.40  E-value=4.4  Score=35.77  Aligned_cols=204  Identities=12%  Similarity=0.054  Sum_probs=104.5

Q ss_pred             EEEEeeCCceEEEEeC-CCCceeeeeeCCCCc-----------ccEEEecCC----CCeEEEEecCCCEEEEEeEecCCC
Q 013578          221 IIASCSEGTDISIWHG-KTGKLLGNVDTNQLK-----------NNMAAISPN----GRFLAAAAFTADVKVWEIVYSKDG  284 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~----~~~l~~~~~dg~i~i~d~~~~~~~  284 (440)
                      ++++++.++.|...|. .+|+.+-++......           .+.+++.++    +.+++.++.|+.|.-.|..+++  
T Consensus        65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~--  142 (596)
T d1w6sa_          65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE--  142 (596)
T ss_dssp             EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC--
T ss_pred             EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc--
Confidence            3444555566777776 578888766422110           123444332    3468888889988888876655  


Q ss_pred             ceeeeeeeeeeeccc-cceEEEEEcC--CCCEEEEEeC------CCcEEEEecCccccccCCCCccccc-----------
Q 013578          285 LVKAVTSVMQLKGHK-SAVTWLCFAP--NSEQIITASK------DGTLRVWNINVRYHLDEDPKTLKVL-----------  344 (440)
Q Consensus       285 ~~~~~~~~~~~~~h~-~~v~~~~~~p--~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~-----------  344 (440)
                            .+..+.... ..-..+.-.|  -+..++.+..      .|.|+-+|+++++.+-+........           
T Consensus       143 ------~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~  216 (596)
T d1w6sa_         143 ------TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK  216 (596)
T ss_dssp             ------EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             ------eeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccc
Confidence                  222221100 0000011111  1233444432      4889999999887764311100000           


Q ss_pred             --------------cccccCCCCCeeeeeeEEeCCCCCEEEEec-----------------CCEEEEEEcCCccchhhhh
Q 013578          345 --------------PIPLLDSNGATLQYDRLSLSSDGKILAATH-----------------GSTLQWLSVETGKVLDTAE  393 (440)
Q Consensus       345 --------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------------~~~i~i~d~~~~~~~~~~~  393 (440)
                                    .-..... +.......+++.+...++..+.                 ...|.-.|..+|+.+..++
T Consensus       217 ~~~~g~~~~~~~tw~g~~~~~-gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q  295 (596)
T d1w6sa_         217 NPHYGQKGLGTGTWEGDAWKI-GGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ  295 (596)
T ss_dssp             CGGGCCTTHHHHTSSTTGGGG-CCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred             cccccccccccccCCCCceec-CCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccccccc
Confidence                          0000000 1111233456666665554431                 2457888999999877654


Q ss_pred             ccccC--------CeEEEEe-cCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578          394 KAHEG--------EITCMAW-APKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE  438 (440)
Q Consensus       394 ~~h~~--------~v~~v~~-~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~  438 (440)
                      ..|.+        ...-+.. ..++     .....++.+..+|.+.++|..+++
T Consensus       296 ~~~~D~Wd~d~~~~~~l~d~~~~~G-----~~~~~v~~~~k~G~~~vlDr~tG~  344 (596)
T d1w6sa_         296 KTPHDEWDYAGVNVMMLSEQKDKDG-----KARKLLTHPDRNGIVYTLDRTDGA  344 (596)
T ss_dssp             SSTTCSSCCCCCCCCEEEEEECTTS-----CEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ceeccccCCccccceeeeecccccc-----ccccceeccccccceeeecCCCCc
Confidence            32322        1111111 1222     222578889999999999999886

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.61  E-value=3.8  Score=33.62  Aligned_cols=163  Identities=6%  Similarity=-0.059  Sum_probs=87.0

Q ss_pred             EEEEeeCCceEEEEeCCC-----------CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578          221 IIASCSEGTDISIWHGKT-----------GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV  289 (440)
Q Consensus       221 ~l~s~~~d~~i~vwd~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  289 (440)
                      +++.|+.++ +.|.....           ........  -..+..++|+.+  .|++. .++.+..++.....       
T Consensus        50 Ll~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~-------  116 (381)
T d1xipa_          50 LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLDLEELS-------  116 (381)
T ss_dssp             EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEESSSTT-------
T ss_pred             EEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEEeeccc-------
Confidence            677777776 66665311           11111111  124677888644  45554 45667777764432       


Q ss_pred             eeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE
Q 013578          290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI  369 (440)
Q Consensus       290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  369 (440)
                       .......-..++.++.+.|.  .++....++.+.++++.......    ..........     ...+.+++|++.|+.
T Consensus       117 -~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~----~~~~v~~~~~-----~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         117 -EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV-----TNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             -CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEE-----CSSEEEEEETTSCEE
T ss_pred             -cccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccc----ccCCcceEEe-----cCCceEEEEeCCcEE
Confidence             11222223456788888775  56667778999999988653210    0000000000     123667889999988


Q ss_pred             EEEecCCEEEEE-EcCCccchhhhhccccCCeEEEEecCCC
Q 013578          370 LAATHGSTLQWL-SVETGKVLDTAEKAHEGEITCMAWAPKT  409 (440)
Q Consensus       370 l~~~~~~~i~i~-d~~~~~~~~~~~~~h~~~v~~v~~~~~~  409 (440)
                      ++++.++...+. ++.....+... ......|.+|.|-.+.
T Consensus       185 ~v~~~g~~~q~k~~i~~~~~~~~p-~~~~~~v~sI~WL~~~  224 (381)
T d1xipa_         185 SFAWRNGEMEKQFEFSLPSELEEL-PVEEYSPLSVTILSPQ  224 (381)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTS-CTTTSEEEEEEESSSS
T ss_pred             EEEeCCCceeeccCCCCccccCCC-cCCCcceeEEEEecCc
Confidence            888766554432 22222222111 1234468888888764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.39  E-value=3.7  Score=33.23  Aligned_cols=131  Identities=16%  Similarity=0.197  Sum_probs=73.4

Q ss_pred             ccEEEe--cCC-CC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578          252 NNMAAI--SPN-GR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN  327 (440)
Q Consensus       252 v~~~~~--s~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd  327 (440)
                      +..+|+  ++. |. ++++...+|.+..|.+.....+.. ....+..+. -...+.++.+.+....|+.+-++.-|..++
T Consensus       130 vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v-~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~  207 (353)
T d1h6la_         130 VYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYI-SGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFS  207 (353)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSE-EEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             ceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCce-eeEeeeccC-CCCccceEEEeCCCCcEEEecCccceEEEE
Confidence            455555  664 44 456667789999999876554432 223445554 345788999999888899998876665555


Q ss_pred             cCccccccCCCCccccccccccCCCCCeeeeeeEEe--CCCCC-EEEEec--CCEEEEEEcCCc-cchhh
Q 013578          328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL--SSDGK-ILAATH--GSTLQWLSVETG-KVLDT  391 (440)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~-~l~~~~--~~~i~i~d~~~~-~~~~~  391 (440)
                      .+....     .....+.  ......-...+..++.  ..++. ||++++  +++..+||..+. +.+..
T Consensus       208 a~~~~~-----~~~~~i~--~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         208 AEPDGG-----SNGTVID--RADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             SSTTSC-----SCCEEEE--ECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             eccCCC-----ccceeee--cccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence            542110     0000000  0001111223334443  33434 555543  689999999774 44433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=88.85  E-value=4.9  Score=32.40  Aligned_cols=156  Identities=9%  Similarity=-0.003  Sum_probs=78.9

Q ss_pred             ccCCC-EEEEe---eCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccc
Q 013578          100 SSDGK-CLATA---CADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS  175 (440)
Q Consensus       100 s~dg~-~l~t~---s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  175 (440)
                      .+||. +|+..   ....+|.+|++...............+.-..+.++.+..++..+++-...........+..     
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~-----  181 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM-----  181 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHH-----
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhH-----
Confidence            34555 34443   2456788888765543222222222233345678888888876666322211000000000     


Q ss_pred             cccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee---eeeCCCCcc
Q 013578          176 TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG---NVDTNQLKN  252 (440)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v  252 (440)
                           ...........|+  .............+..+..+++++.++++-+..+.|++|++.....+.   .+.. ....
T Consensus       182 -----~~~~~~g~v~~~~--~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l-~~~p  253 (340)
T d1v04a_         182 -----HLGLAWSFVTYYS--PNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-DTLV  253 (340)
T ss_dssp             -----HTTCCCEEEEEEC--SSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-SSEE
T ss_pred             -----hhcCCceeEEEEc--CCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC-CCCC
Confidence                 0000001112222  222333445566788888899999888888889999999987543222   2222 2334


Q ss_pred             cEEEecCCCCeEEEEe
Q 013578          253 NMAAISPNGRFLAAAA  268 (440)
Q Consensus       253 ~~~~~s~~~~~l~~~~  268 (440)
                      .-+.+.+++..+.++.
T Consensus       254 DNi~~d~~~g~lwva~  269 (340)
T d1v04a_         254 DNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEECTTTCCEEEEE
T ss_pred             CccEEecCCCEEEEEE
Confidence            5577776433334443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.42  E-value=7.6  Score=34.06  Aligned_cols=54  Identities=19%  Similarity=0.100  Sum_probs=37.2

Q ss_pred             CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578          376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES  439 (440)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~  439 (440)
                      |.|.-+|+.+|+.+.+...  ..++..-..+..+        .++++|+.||.++-+|.++||.
T Consensus       466 G~l~AiD~~TG~i~W~~~~--~~p~~~g~lstag--------glVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKE--HLPLWAGVLATAG--------NLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEE--SSCCCSCCEEETT--------TEEEEECTTSEEEEEETTTCCE
T ss_pred             CeEEEEcCCCCcEEeecCC--CCCCccceeEEcC--------CeEEEeCCCCeEEEEECCCCcE
Confidence            5688888888888877642  2222221122233        4788899999999999999973

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.20  E-value=8.5  Score=31.41  Aligned_cols=85  Identities=7%  Similarity=-0.074  Sum_probs=47.4

Q ss_pred             eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578          230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP  309 (440)
Q Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  309 (440)
                      .+..++..+-...........++..+.++|  ..++....++.+.++++...+.....  ..+..+. -.+.+.++.|++
T Consensus       106 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~--~~v~~~~-~~~~~~~v~ws~  180 (381)
T d1xipa_         106 ALYSLDLEELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLA--QNVTSFD-VTNSQLAVLLKD  180 (381)
T ss_dssp             EEEEEESSSTTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEE--ESEEEEE-ECSSEEEEEETT
T ss_pred             CEEEEEeeccccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCcccccc--CCcceEE-ecCCceEEEEeC
Confidence            366666554433333333344556666655  45667777888888887554311100  0011111 235688888988


Q ss_pred             CCCEEEEEeC
Q 013578          310 NSEQIITASK  319 (440)
Q Consensus       310 ~~~~l~s~~~  319 (440)
                      .|..++++..
T Consensus       181 kgkq~v~~~g  190 (381)
T d1xipa_         181 RSFQSFAWRN  190 (381)
T ss_dssp             SCEEEEEEET
T ss_pred             CcEEEEEeCC
Confidence            8888887743