Citrus Sinensis ID: 013602
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 439 | 2.2.26 [Sep-21-2011] | |||||||
| O81312 | 430 | UDP-glucuronate 4-epimera | yes | no | 0.974 | 0.995 | 0.871 | 0.0 | |
| Q9LPC1 | 434 | UDP-glucuronate 4-epimera | no | no | 0.974 | 0.986 | 0.864 | 0.0 | |
| O22141 | 437 | UDP-glucuronate 4-epimera | no | no | 0.984 | 0.988 | 0.829 | 0.0 | |
| Q9STI6 | 436 | UDP-glucuronate 4-epimera | no | no | 0.984 | 0.990 | 0.737 | 1e-179 | |
| Q9LIS3 | 460 | UDP-glucuronate 4-epimera | no | no | 0.801 | 0.765 | 0.775 | 1e-164 | |
| Q9M0B6 | 429 | UDP-glucuronate 4-epimera | no | no | 0.940 | 0.962 | 0.693 | 1e-162 | |
| P39858 | 334 | Protein CapI OS=Staphyloc | yes | no | 0.744 | 0.979 | 0.448 | 2e-77 | |
| Q04871 | 334 | Uncharacterized 37.6 kDa | N/A | no | 0.738 | 0.970 | 0.461 | 3e-77 | |
| Q58455 | 326 | Uncharacterized protein M | yes | no | 0.708 | 0.953 | 0.415 | 2e-69 | |
| O54067 | 341 | UDP-glucuronate 5'-epimer | yes | no | 0.738 | 0.950 | 0.413 | 6e-67 |
| >sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/436 (87%), Positives = 403/436 (92%), Gaps = 8/436 (1%)
Query: 4 LKQMSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSFIFLAVILIFFFRSP-SSN 62
+KQMSHLD+IPSTPGKFK PYF+R R+ SS+AKL FWS +F+ +I IFF+RSP SSN
Sbjct: 1 MKQMSHLDDIPSTPGKFK----PYFHRTRWQSSVAKLAFWSLVFVGLIFIFFYRSPVSSN 56
Query: 63 PLPSADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALKRR 122
P ADPSRRSLRTY WGGPA+EKRVRSSAR+R R G SVLVTGAAGFVGTHVSAALKRR
Sbjct: 57 P---ADPSRRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRR 113
Query: 123 GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLA 182
GDGVLGLDNFNDYYDPSLK+ARQALLERSG+F+VEGDIND ALLKKLF+VV FTHVMHLA
Sbjct: 114 GDGVLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLA 173
Query: 183 AQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKD 242
AQAGVRYAM+NP+SYVHSNIAG V+LLEVCK+ANPQPAIVWASSSSVYGLNTKVPFSEKD
Sbjct: 174 AQAGVRYAMENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKD 233
Query: 243 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNR 302
RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL
Sbjct: 234 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKG 293
Query: 303 KSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362
K+I IFE +HGTVARDFTYIDDIVKGCL ALDTAEKSTGSGGKKRG AQLRVFNLGNTS
Sbjct: 294 KAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTS 353
Query: 363 PVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKK 422
PVPV+DLV+ILERLLKVKAKRNIMKLPRNGDV FTHANIS AQRELGYKPTTDLQTGLKK
Sbjct: 354 PVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKK 413
Query: 423 FVRWYLSYYAGGKKAA 438
F RWYL YY GGKKAA
Sbjct: 414 FARWYLGYYNGGKKAA 429
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 6 |
| >sp|Q9LPC1|GAE2_ARATH UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/435 (86%), Positives = 401/435 (92%), Gaps = 7/435 (1%)
Query: 7 MSHLDNIPSTPGKFKM-DKSPYF-NRLRFHSSLAKLTFWSFIFLAVILIFFFRSPSSNPL 64
MSHLD+IPSTPGKFKM DKSP+F +R R+ SS+AKL FWS +F ++ IFF+RSP SNP
Sbjct: 1 MSHLDDIPSTPGKFKMMDKSPFFLHRTRWQSSVAKLAFWSLVFFGLLFIFFYRSPISNP- 59
Query: 65 PSADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALKRRGD 124
D SRRSLRTY WGGPA+EKRVRSSARVR RNG+SVLVTGAAGFVGTHVSAALKRRGD
Sbjct: 60 ---DSSRRSLRTYSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGD 116
Query: 125 GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQ 184
GVLGLDNFNDYYD SLK++RQALLERSG+FIVEGDIND++LLKKLF+VV FTHVMHLAAQ
Sbjct: 117 GVLGLDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQ 176
Query: 185 AGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244
AGVRYAM+NP SYVHSNIAG V+LLEVCK+ANPQPAIVWASSSSVYGLNTKVPFSEKDRT
Sbjct: 177 AGVRYAMENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRT 236
Query: 245 DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKS 304
DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL K+
Sbjct: 237 DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKA 296
Query: 305 IPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364
I IFE +HGTVARDFTYIDDIVKGCL ALDTAEKSTGSGGKKRG AQLRVFNLGNTSPV
Sbjct: 297 ISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPV 356
Query: 365 PVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFV 424
PV+DLVSILERLLKVKAKRN+MKLPRNGDVPFTHANIS AQRE GYKP+TDLQTGLKKFV
Sbjct: 357 PVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFV 416
Query: 425 RWYLSYY-AGGKKAA 438
RWYL YY GGKK A
Sbjct: 417 RWYLGYYKQGGKKVA 431
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|O22141|GAE4_ARATH UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/435 (82%), Positives = 392/435 (90%), Gaps = 3/435 (0%)
Query: 7 MSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSFIFLAVILIFFFRSPSSNPLPS 66
MS LD+IPS+PGKFKM+KS Y +RLRF SSL K F+SF L +I + F RSP S S
Sbjct: 1 MSRLDDIPSSPGKFKMEKSSYLHRLRFQSSLTKFAFFSFFLLCLISLLFLRSPPSINPSS 60
Query: 67 ADPSRRS-LRTYDWGGPAFEKRVRSSARVRA--RNGISVLVTGAAGFVGTHVSAALKRRG 123
R LRT +GGPA+EKR+RSSAR+R NGI+VLVTGAAGFVGTHVSAALKRRG
Sbjct: 61 PSDPSRRSLRTNTYGGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRG 120
Query: 124 DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAA 183
DGV+GLDNFNDYYDPSLK+AR+ALLERSGIFIVEGDIND+ LL+KLF +VSFTHVMHLAA
Sbjct: 121 DGVIGLDNFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAA 180
Query: 184 QAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243
QAGVRYAM+NP+SYVHSNIAG V+LLE+CK+ NPQPAIVWASSSSVYGLNTKVPFSEKD+
Sbjct: 181 QAGVRYAMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDK 240
Query: 244 TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRK 303
TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFT+DIL K
Sbjct: 241 TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGK 300
Query: 304 SIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363
SI IFES +HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRG AQLRVFNLGNTSP
Sbjct: 301 SISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSP 360
Query: 364 VPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKF 423
VPVSDLV ILER LKVKAK+N++K+PRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKF
Sbjct: 361 VPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKF 420
Query: 424 VRWYLSYYAGGKKAA 438
VRWYLSYY+G KKAA
Sbjct: 421 VRWYLSYYSGDKKAA 435
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q9STI6|GAE5_ARATH UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 626 bits (1615), Expect = e-179, Method: Compositional matrix adjust.
Identities = 320/434 (73%), Positives = 365/434 (84%), Gaps = 2/434 (0%)
Query: 7 MSHLDNIPSTPGKFKMDKSPYFNRLRFHS--SLAKLTFWSFIFLAVILIFFFRSPSSNPL 64
MSHLD++PSTPGK+K DK P + L H L+KLT W+ +FLA+ L + SP +P
Sbjct: 1 MSHLDDLPSTPGKYKTDKVPPYGILHHHRYLRLSKLTLWASLFLALFLFYLVLSPPPSPS 60
Query: 65 PSADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALKRRGD 124
S+ +GG +EK+VR SAR R+ G++VLVTGA+GFVGTHVS AL+RRGD
Sbjct: 61 RRNLNDSSSISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGD 120
Query: 125 GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQ 184
GVLGLDNFN YYDP LK+ARQ LLERSG+F+VEGDIND LL+KLFDVV FTHVMHLAAQ
Sbjct: 121 GVLGLDNFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQ 180
Query: 185 AGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244
AGVRYAMQNP SYV+SNIAG V+LLEV K+ANPQPAIVWASSSSVYGLN+KVPFSEKDRT
Sbjct: 181 AGVRYAMQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRT 240
Query: 245 DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKS 304
DQPASLYAATKKAGE IAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFT+DIL K+
Sbjct: 241 DQPASLYAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKT 300
Query: 305 IPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364
I +FESPD G+VARDFTYIDDIVKGCL ALDTAEKSTGSGGKK+G A R++NLGNTSPV
Sbjct: 301 ITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPV 360
Query: 365 PVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFV 424
PV+ LV+ILE+LLK+KAK+ IM LPRNGDV FTHANI+LAQ ELGYKP DL+TGLKKFV
Sbjct: 361 PVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFV 420
Query: 425 RWYLSYYAGGKKAA 438
+WY+ +Y G KK +
Sbjct: 421 KWYMGFYTGSKKKS 434
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q9LIS3|GAE6_ARATH UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 579 bits (1493), Expect = e-164, Method: Compositional matrix adjust.
Identities = 273/352 (77%), Positives = 313/352 (88%)
Query: 80 GGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS 139
GG A+EKRVR S+ + +G+SVLVTGAAGFVG+H S AL++RGDGVLG DNFNDYYDPS
Sbjct: 92 GGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPS 151
Query: 140 LKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVH 199
LK+ARQ LLE+ +FIVEGD+ND LL+KLFDVV FTH++HLAAQAGVRYAM+NP SY+
Sbjct: 152 LKRARQELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIA 211
Query: 200 SNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259
SNIAG V+LLEV K ANPQPAIVWASSSSVYGLNT+ PFSE+ RTDQPASLYAATKKAGE
Sbjct: 212 SNIAGFVNLLEVAKAANPQPAIVWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGE 271
Query: 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319
EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFT+DIL+ KSI I+ + D+ VARD
Sbjct: 272 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARD 331
Query: 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKV 379
FTYIDDIVKGC+ ALDTAEKSTGSGGKKRG+AQLRV+NLGNTSPVPV LVSILE LL
Sbjct: 332 FTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGT 391
Query: 380 KAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
KAK++++K+PRNGDVP+THAN+SLA ++ GYKPTTDL GL+KFV+WY+ YY
Sbjct: 392 KAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYY 443
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q9M0B6|GAE1_ARATH UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 571 bits (1471), Expect = e-162, Method: Compositional matrix adjust.
Identities = 296/427 (69%), Positives = 342/427 (80%), Gaps = 14/427 (3%)
Query: 14 PSTPGKFKMDKSPYFNRL--RFHSSLAKLTFWSFIFLAVILIFF-FRSPSSNPLPSADPS 70
PSTPGKFK+D+S NR R +S + + W+ +A+ + F+S D
Sbjct: 10 PSTPGKFKIDRS---NRQLHRCFASTSTMFLWALFLIALTASYLSFQS-------FVDSG 59
Query: 71 RRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLD 130
R L T WGG +EK+VR+SA++ GISVLVTGA GFVG+HVS AL++RGDGV+GLD
Sbjct: 60 SRYL-TASWGGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGLD 118
Query: 131 NFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYA 190
NFN+YYDPSLK+AR++LL GIF+VEGD+ND LL KLFDVV+FTHVMHLAAQAGVRYA
Sbjct: 119 NFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYA 178
Query: 191 MQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 250
++NP SYVHSNIAGLV+LLE+CK ANPQPAIVWASSSSVYGLN KVPFSE DRTDQPASL
Sbjct: 179 LENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASL 238
Query: 251 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFES 310
YAATKKAGEEI HTYNHIYGL++TGLRFFTVYGPWGRPDMAYF FTR+IL K I I+
Sbjct: 239 YAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRG 298
Query: 311 PDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLV 370
+ +ARDFTYIDDIVKGCL +LD++ KSTGSGGKKRG A R+FNLGNTSPV V LV
Sbjct: 299 KNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILV 358
Query: 371 SILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430
ILE+ LKVKAKRN +++P NGDVPFTHANIS A+ E GYKPTTDL+TGLKKFVRWYLSY
Sbjct: 359 DILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLSY 418
Query: 431 YAGGKKA 437
Y KA
Sbjct: 419 YGYNTKA 425
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|P39858|CAPI_STAAU Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 216/337 (64%), Gaps = 10/337 (2%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ +L+TG AGF+G+H++ L ++G V+G+D+ NDYY SLK+ R + + +
Sbjct: 1 MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK 60
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
+ + L K+F V++LAAQAGVRY+++NP +Y+ SNI G +++LE ++ N Q
Sbjct: 61 LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ- 119
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
+++ASSSSVYG NT PFS D D P SLYAATKK+ E +AHTY+H+Y L TGLRFF
Sbjct: 120 NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF 179
Query: 280 TVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC-----LAAL 334
TVYGPWGRPDMA F FT+ I+N ++I ++ +HG + RDFTY+DDIV+ A
Sbjct: 180 TVYGPWGRPDMALFKFTKAIVNDQAIDVY---NHGNMMRDFTYVDDIVEAISRLVKKPAS 236
Query: 335 DTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDV 394
E S A +V+N+GN SPV + + V +E L +A++N M L + GDV
Sbjct: 237 PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDL-QPGDV 295
Query: 395 PFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
P T+AN+ R++ +KP T +Q G+ KFV WYL YY
Sbjct: 296 PETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY 332
|
Required for the biosynthesis of type 1 capsular polysaccharide. Staphylococcus aureus (taxid: 1280) EC: 4 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (739), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 154/334 (46%), Positives = 211/334 (63%), Gaps = 10/334 (2%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND 162
LVTGAAGF+G HVS L G V+G+DN NDYYD SLK+AR LL + G + D+ D
Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63
Query: 163 MALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIV 222
+ LF F V + VRY+++NP++Y SN+ G +++LE C++ Q ++
Sbjct: 64 REGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ-HLL 122
Query: 223 WASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVY 282
+ASSSSVYGLN K+PFS D D P SLYAATKKA E +AHTY+H+YGL TGLRFFTVY
Sbjct: 123 YASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVY 182
Query: 283 GPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT-----A 337
GPWGRPDMA F FT+ +L KSI ++ ++G + RDFTYIDDI + + D
Sbjct: 183 GPWGRPDMALFKFTKAMLEGKSIDVY---NYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239
Query: 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFT 397
+ + +G A RV+N+GN+SPV + D + LE L ++AK+N++ L + GDV T
Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPL-QPGDVLET 298
Query: 398 HANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
A+ +G+ P T ++ G+K FV WY +Y
Sbjct: 299 SADTKALYEVIGFTPETTVKDGVKNFVNWYRDFY 332
|
Escherichia coli O111:H- (taxid: 168927) |
| >sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1055 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 213/332 (64%), Gaps = 21/332 (6%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDG--VLGLDNFNDYYDPSLKKARQALLERSGIF-IVE 157
++LVTG+AGF+G H+S L + V+G+DN N+YY+P LK+ R +L+ + ++
Sbjct: 5 NILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIK 64
Query: 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217
D +D L + ++HL AQAGVRY++QNP +Y+ SN G +++ E + +
Sbjct: 65 LDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDI 124
Query: 218 QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 277
+ +V+ASSSSVYG N K+PFSE DR D+P SLYA+TK++ E +AH Y+H+YG+ + GLR
Sbjct: 125 EK-VVYASSSSVYGGNRKIPFSEDDRVDKPISLYASTKRSNELMAHVYHHLYGIKMIGLR 183
Query: 278 FFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337
FFTVYG +GRPDMAYF F ++IL K I ++ ++G + RDFTYI D+V G L A+
Sbjct: 184 FFTVYGEYGRPDMAYFKFAKNILLGKEIEVY---NYGNMERDFTYISDVVDGILRAI--- 237
Query: 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFT 397
+ +FNLGN+ PV + + ++E+ L KAK+ + + ++GDV T
Sbjct: 238 ----------KKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPM-QDGDVLRT 286
Query: 398 HANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
+A++S +++ LGYKP ++ GLK+F W+L
Sbjct: 287 YADLSKSEKLLGYKPKVTIEEGLKRFCNWFLE 318
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) |
| >sp|O54067|LPSL_RHIME UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti (strain 1021) GN=lspL PE=3 SV=2 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 204/336 (60%), Gaps = 12/336 (3%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERS-GIFIVEGDIN 161
L+TG AGF+G HV+ L G V+G D YYD +LK+ R A+L+RS G V +
Sbjct: 4 LITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTAMLE 63
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D A L + ++ ++HLAAQAGVRY+++NP +YV +N+ G ++LE+ K P+ +
Sbjct: 64 DRAALDRAAELAEPEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK-HL 122
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
+ AS+SS+YG N K+PF+E DR D+P +LYAATKK+ E +AH+Y H+Y + T RFFTV
Sbjct: 123 MLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRFFTV 182
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC--LAALDTAEK 339
YGPWGRPDMA F F I N + I I+ G ++RDFTYIDD+V+ L+ + +E+
Sbjct: 183 YGPWGRPDMALFKFVDAIHNGRPIDIY---GEGRMSRDFTYIDDLVESIVRLSHVPPSEE 239
Query: 340 STGSGGKKRG----RAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVP 395
+ + K A RV N G PV + V +E+ + A N++ + + GDVP
Sbjct: 240 NRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPM-QQGDVP 298
Query: 396 FTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
T A+ L + G+KP+ ++ G+ +FV WY Y
Sbjct: 299 RTFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNY 334
|
Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 439 | ||||||
| 449432263 | 438 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.997 | 1.0 | 0.892 | 0.0 | |
| 356496364 | 438 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.993 | 0.995 | 0.860 | 0.0 | |
| 449480059 | 432 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.984 | 1.0 | 0.898 | 0.0 | |
| 356506372 | 438 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.993 | 0.995 | 0.862 | 0.0 | |
| 357469707 | 440 | UDP-glucuronate 4-epimerase [Medicago tr | 0.993 | 0.990 | 0.863 | 0.0 | |
| 15236712 | 430 | UDP-D-glucuronate 4-epimerase 3 [Arabido | 0.974 | 0.995 | 0.871 | 0.0 | |
| 225454018 | 433 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.984 | 0.997 | 0.874 | 0.0 | |
| 297810175 | 429 | UDP-D-glucuronate 4-epimerase 2 [Arabido | 0.972 | 0.995 | 0.866 | 0.0 | |
| 359489543 | 512 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.981 | 0.841 | 0.867 | 0.0 | |
| 15217591 | 434 | UDP-D-glucuronate 4-epimerase 2 [Arabido | 0.974 | 0.986 | 0.864 | 0.0 |
| >gi|449432263|ref|XP_004133919.1| PREDICTED: UDP-glucuronate 4-epimerase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/439 (89%), Positives = 417/439 (94%), Gaps = 1/439 (0%)
Query: 1 MSQLKQMSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSFIFLAVILIFFFRSPS 60
MS++K MSHLDNIPSTPGKFKMDKSPY +RLR+HSSL KLTFWS + L ILIFFFRSPS
Sbjct: 1 MSEIKVMSHLDNIPSTPGKFKMDKSPYIHRLRWHSSLTKLTFWSLVILGSILIFFFRSPS 60
Query: 61 SNPLPSADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALK 120
S+PL +D SRRSL TYDWGGPA+EKRVRSSARVR+RNGISVLVTGAAGFVGTHVS ALK
Sbjct: 61 SSPL-PSDHSRRSLSTYDWGGPAWEKRVRSSARVRSRNGISVLVTGAAGFVGTHVSVALK 119
Query: 121 RRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMH 180
RRGDGVLGLDNFN+YYD SLK+ARQALLER+G+F+VEGDIND ALLKKLF+VV FTHVMH
Sbjct: 120 RRGDGVLGLDNFNNYYDQSLKRARQALLERTGVFVVEGDINDSALLKKLFEVVPFTHVMH 179
Query: 181 LAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSE 240
LAAQAGVRYAM+NP+SYVHSNIAGLVSLLEVCK+ANPQP+IVWASSSSVYGLNTKVPFSE
Sbjct: 180 LAAQAGVRYAMENPSSYVHSNIAGLVSLLEVCKSANPQPSIVWASSSSVYGLNTKVPFSE 239
Query: 241 KDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL 300
KDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL
Sbjct: 240 KDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL 299
Query: 301 NRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN 360
KSIPIFE DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKK+G AQLRVFNLGN
Sbjct: 300 KGKSIPIFEGADHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKKGPAQLRVFNLGN 359
Query: 361 TSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGL 420
TSPVPVSDLVSILE+LLK+KAKRNIMKLPRNGDV FTHANISLAQRELGYKPTTDLQTGL
Sbjct: 360 TSPVPVSDLVSILEKLLKMKAKRNIMKLPRNGDVQFTHANISLAQRELGYKPTTDLQTGL 419
Query: 421 KKFVRWYLSYYAGGKKAAG 439
KKFVRWY++YY+ GKKAAG
Sbjct: 420 KKFVRWYMNYYSQGKKAAG 438
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496364|ref|XP_003517038.1| PREDICTED: UDP-glucuronate 4-epimerase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/437 (86%), Positives = 411/437 (94%), Gaps = 1/437 (0%)
Query: 1 MSQLKQMSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSFIFLAVILIFFFRSPS 60
MSQLK MSH+D+ PSTPGKFKM+K+ YFNR+R+H+SLAKL WSF+FL ILIFF RSP+
Sbjct: 1 MSQLKPMSHIDSAPSTPGKFKMEKASYFNRVRWHTSLAKLAVWSFVFLGAILIFFLRSPA 60
Query: 61 SNPLPSADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALK 120
S+P+P AD SRRSLRTY+WGGP +EKRVR+SA++R+RNG +VLVTGAAGFVGTHVSAALK
Sbjct: 61 SSPVP-ADLSRRSLRTYNWGGPVWEKRVRASAQIRSRNGFAVLVTGAAGFVGTHVSAALK 119
Query: 121 RRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMH 180
RRGDGVLGLDNFNDYYDPSLK+ARQ LLERSG++IVEGDIND ALL+KLF+VV FTHVMH
Sbjct: 120 RRGDGVLGLDNFNDYYDPSLKRARQGLLERSGVYIVEGDINDEALLRKLFEVVPFTHVMH 179
Query: 181 LAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSE 240
LAAQAGVRYAM+NP SYVHSNIAG V+LLEVCK+ NPQPAIVWASSSSVYGLNTKVPFSE
Sbjct: 180 LAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPAIVWASSSSVYGLNTKVPFSE 239
Query: 241 KDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL 300
+DRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRD+L
Sbjct: 240 RDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDLL 299
Query: 301 NRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN 360
KSIPIFE+ +HGTVARDFTYIDDIV+GCL ALDTAEKSTGSGGKKRG AQLR+FNLGN
Sbjct: 300 KGKSIPIFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRIFNLGN 359
Query: 361 TSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGL 420
TSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDV FTHANIS AQ ELGYKPTTDLQ+GL
Sbjct: 360 TSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVQFTHANISYAQMELGYKPTTDLQSGL 419
Query: 421 KKFVRWYLSYYAGGKKA 437
KKFVRWYL+YY+GGKKA
Sbjct: 420 KKFVRWYLNYYSGGKKA 436
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480059|ref|XP_004155787.1| PREDICTED: UDP-glucuronate 4-epimerase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/433 (89%), Positives = 412/433 (95%), Gaps = 1/433 (0%)
Query: 7 MSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSFIFLAVILIFFFRSPSSNPLPS 66
MSHLDNIPSTPGKFKMDKSPY +RLR+HSSL KLTFWS + L ILIFFFRSPSS+PL
Sbjct: 1 MSHLDNIPSTPGKFKMDKSPYIHRLRWHSSLTKLTFWSLVILGSILIFFFRSPSSSPL-P 59
Query: 67 ADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALKRRGDGV 126
+D SRRSL TYDWGGPA+EKRVRSSARVR+RNGISVLVTGAAGFVGTHVS ALKRRGDGV
Sbjct: 60 SDHSRRSLSTYDWGGPAWEKRVRSSARVRSRNGISVLVTGAAGFVGTHVSVALKRRGDGV 119
Query: 127 LGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAG 186
LGLDNFN+YYD SLK+ARQALLER+G+F+VEGDIND ALLKKLF+VV FTHVMHLAAQAG
Sbjct: 120 LGLDNFNNYYDQSLKRARQALLERTGVFVVEGDINDSALLKKLFEVVPFTHVMHLAAQAG 179
Query: 187 VRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQ 246
VRYAM+NP+SYVHSNIAGLVSLLEVCK+ANPQP+IVWASSSSVYGLNTKVPFSEKDRTDQ
Sbjct: 180 VRYAMENPSSYVHSNIAGLVSLLEVCKSANPQPSIVWASSSSVYGLNTKVPFSEKDRTDQ 239
Query: 247 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIP 306
PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL KSIP
Sbjct: 240 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKSIP 299
Query: 307 IFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPV 366
IFE DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKK+G AQLRVFNLGNTSPVPV
Sbjct: 300 IFEGADHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKKGPAQLRVFNLGNTSPVPV 359
Query: 367 SDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
SDLVSILE+LLK+KAKRNIMKLPRNGDV FTHANISLAQRELGYKPTTDLQTGLKKFVRW
Sbjct: 360 SDLVSILEKLLKMKAKRNIMKLPRNGDVQFTHANISLAQRELGYKPTTDLQTGLKKFVRW 419
Query: 427 YLSYYAGGKKAAG 439
Y++YY+ GKKAAG
Sbjct: 420 YMNYYSQGKKAAG 432
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506372|ref|XP_003521958.1| PREDICTED: UDP-glucuronate 4-epimerase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/437 (86%), Positives = 410/437 (93%), Gaps = 1/437 (0%)
Query: 1 MSQLKQMSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSFIFLAVILIFFFRSPS 60
MSQLKQMSH+D+ P TPGKFKMDK+ YFNR+R+H+SLAKL WSF+FL ILIFF RSP+
Sbjct: 1 MSQLKQMSHIDSAPPTPGKFKMDKASYFNRVRWHTSLAKLAVWSFVFLGAILIFFLRSPA 60
Query: 61 SNPLPSADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALK 120
S+P+P AD SRRSLRTY+WGGP +EKRVR+SA+VR+RNG +VLVTGAAGFVGTHVSAALK
Sbjct: 61 SSPVP-ADLSRRSLRTYNWGGPVWEKRVRASAQVRSRNGFAVLVTGAAGFVGTHVSAALK 119
Query: 121 RRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMH 180
RRGDGVLGLDNFNDYYDPSLK+ARQ LLER+G++IVEGDIND ALL+KLF+VV FTHVMH
Sbjct: 120 RRGDGVLGLDNFNDYYDPSLKRARQGLLERNGVYIVEGDINDEALLRKLFEVVPFTHVMH 179
Query: 181 LAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSE 240
LAAQAGVRYAM+NP SYVHSNIAG V+LLEVCK+ NPQPAIVWASSSSVYGLNTKVPFSE
Sbjct: 180 LAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPAIVWASSSSVYGLNTKVPFSE 239
Query: 241 KDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL 300
+DRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRD+L
Sbjct: 240 RDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDLL 299
Query: 301 NRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN 360
K IPIFE+ +HGTVARDFTYIDDIV+GCL ALDTAEKSTGSGGKKRG AQLRVFNLGN
Sbjct: 300 KGKPIPIFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRVFNLGN 359
Query: 361 TSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGL 420
TSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDV FTHANIS AQ ELGYKPTTDLQ+GL
Sbjct: 360 TSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVQFTHANISYAQSELGYKPTTDLQSGL 419
Query: 421 KKFVRWYLSYYAGGKKA 437
KKFVRWYL+YY+GGKKA
Sbjct: 420 KKFVRWYLNYYSGGKKA 436
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357469707|ref|XP_003605138.1| UDP-glucuronate 4-epimerase [Medicago truncatula] gi|355506193|gb|AES87335.1| UDP-glucuronate 4-epimerase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/439 (86%), Positives = 408/439 (92%), Gaps = 3/439 (0%)
Query: 1 MSQLKQMSHLDN-IPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSFIFLAVILIFFFRSP 59
MSQLKQMSH DN PSTPGKFKM+K+ YFNR+R+H+S AKL WSF+F A ILIFFFRSP
Sbjct: 1 MSQLKQMSHADNSAPSTPGKFKMEKASYFNRVRWHASPAKLCLWSFVFSAAILIFFFRSP 60
Query: 60 SSNPLPSADPSRRSLRT-YDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAA 118
+S+PLP ADPSRRSLR+ +WGGP +EKRVRSSARVR+RNG SVLVTGAAGFVGTHVSAA
Sbjct: 61 ASSPLP-ADPSRRSLRSPSNWGGPVWEKRVRSSARVRSRNGFSVLVTGAAGFVGTHVSAA 119
Query: 119 LKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178
LKRRGDGVLG+DNFNDYYDPSLK+ARQALLER+G+FIVEGDIND ALL+KLF+VV FTHV
Sbjct: 120 LKRRGDGVLGIDNFNDYYDPSLKRARQALLERTGVFIVEGDINDAALLRKLFEVVPFTHV 179
Query: 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPF 238
MHLAAQAGVRYAM+NP SYVHSNIAG V+LLEVCK+ NPQP+IVWASSSSVYGLNTKVPF
Sbjct: 180 MHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTKVPF 239
Query: 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRD 298
SE+DRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRD
Sbjct: 240 SERDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRD 299
Query: 299 ILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNL 358
IL K+IPIFE+ +HGTVARDFTYIDDIV+GCL ALDTAEKSTGSGGKKRG AQLRVFNL
Sbjct: 300 ILKGKTIPIFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRVFNL 359
Query: 359 GNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQT 418
GNTSPVPVSDLV ILERLLK KAKRNIMKLPRNGDV FTHANIS AQRELGYKP TDLQ
Sbjct: 360 GNTSPVPVSDLVGILERLLKTKAKRNIMKLPRNGDVQFTHANISYAQRELGYKPVTDLQA 419
Query: 419 GLKKFVRWYLSYYAGGKKA 437
GLKKFVRWYL+YY+ GKKA
Sbjct: 420 GLKKFVRWYLNYYSSGKKA 438
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236712|ref|NP_191922.1| UDP-D-glucuronate 4-epimerase 3 [Arabidopsis thaliana] gi|75100157|sp|O81312.1|GAE3_ARATH RecName: Full=UDP-glucuronate 4-epimerase 3; AltName: Full=UDP-glucuronic acid epimerase 3 gi|3193316|gb|AAC19298.1| contains similarity to nucleotide sugar epimerases [Arabidopsis thaliana] gi|7267098|emb|CAB80769.1| putative nucleotide sugar epimerase [Arabidopsis thaliana] gi|111074442|gb|ABH04594.1| At4g00110 [Arabidopsis thaliana] gi|332656424|gb|AEE81824.1| UDP-D-glucuronate 4-epimerase 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/436 (87%), Positives = 403/436 (92%), Gaps = 8/436 (1%)
Query: 4 LKQMSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSFIFLAVILIFFFRSP-SSN 62
+KQMSHLD+IPSTPGKFK PYF+R R+ SS+AKL FWS +F+ +I IFF+RSP SSN
Sbjct: 1 MKQMSHLDDIPSTPGKFK----PYFHRTRWQSSVAKLAFWSLVFVGLIFIFFYRSPVSSN 56
Query: 63 PLPSADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALKRR 122
P ADPSRRSLRTY WGGPA+EKRVRSSAR+R R G SVLVTGAAGFVGTHVSAALKRR
Sbjct: 57 P---ADPSRRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRR 113
Query: 123 GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLA 182
GDGVLGLDNFNDYYDPSLK+ARQALLERSG+F+VEGDIND ALLKKLF+VV FTHVMHLA
Sbjct: 114 GDGVLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLA 173
Query: 183 AQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKD 242
AQAGVRYAM+NP+SYVHSNIAG V+LLEVCK+ANPQPAIVWASSSSVYGLNTKVPFSEKD
Sbjct: 174 AQAGVRYAMENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKD 233
Query: 243 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNR 302
RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL
Sbjct: 234 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKG 293
Query: 303 KSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362
K+I IFE +HGTVARDFTYIDDIVKGCL ALDTAEKSTGSGGKKRG AQLRVFNLGNTS
Sbjct: 294 KAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTS 353
Query: 363 PVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKK 422
PVPV+DLV+ILERLLKVKAKRNIMKLPRNGDV FTHANIS AQRELGYKPTTDLQTGLKK
Sbjct: 354 PVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKK 413
Query: 423 FVRWYLSYYAGGKKAA 438
F RWYL YY GGKKAA
Sbjct: 414 FARWYLGYYNGGKKAA 429
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454018|ref|XP_002281007.1| PREDICTED: UDP-glucuronate 4-epimerase 3-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/438 (87%), Positives = 414/438 (94%), Gaps = 6/438 (1%)
Query: 1 MSQLKQMSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSFIFLAVILIFFFRSPS 60
MSQLKQMSHLDNIPSTPGKFKM+K RLR+HSSLAKLTFWSF+F +I IFFFRSPS
Sbjct: 1 MSQLKQMSHLDNIPSTPGKFKMEK-----RLRWHSSLAKLTFWSFVFSGLIFIFFFRSPS 55
Query: 61 SNPLPSADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALK 120
S+ LPS S RS R+Y WGGPA+EKRVRSSA+VRARNGISVLVTGAAGFVGTHVSAALK
Sbjct: 56 SSSLPSDS-SIRSFRSYSWGGPAWEKRVRSSAKVRARNGISVLVTGAAGFVGTHVSAALK 114
Query: 121 RRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMH 180
RRGDGV+GLDNFNDYYDPSLK+ARQALLER+G+FIVEGDIND LLKKLFDVV+FTHVMH
Sbjct: 115 RRGDGVVGLDNFNDYYDPSLKRARQALLERTGVFIVEGDINDSELLKKLFDVVTFTHVMH 174
Query: 181 LAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSE 240
LAAQAGVRYAM+NP+SYVHSNIAGLV+LLEVCK+ANPQPAIVWASSSSVYGLNTKVPFSE
Sbjct: 175 LAAQAGVRYAMENPSSYVHSNIAGLVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSE 234
Query: 241 KDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL 300
+DRTDQPASLYAATKKAGEE+AHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL
Sbjct: 235 RDRTDQPASLYAATKKAGEEMAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL 294
Query: 301 NRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN 360
KSIPIFE+P+HGTVARDFTYIDDIVKGC+AALDTAEKSTGSGGKK+G AQLRVFNLGN
Sbjct: 295 KEKSIPIFEAPNHGTVARDFTYIDDIVKGCVAALDTAEKSTGSGGKKKGPAQLRVFNLGN 354
Query: 361 TSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGL 420
TSPVPV+DLV+ILERLLKVKAKR ++K+PRNGDV FTHANISLAQRELGYKPTTDLQTGL
Sbjct: 355 TSPVPVTDLVNILERLLKVKAKRKMIKMPRNGDVQFTHANISLAQRELGYKPTTDLQTGL 414
Query: 421 KKFVRWYLSYYAGGKKAA 438
KKFV+WYL+YY+ GKK A
Sbjct: 415 KKFVKWYLNYYSAGKKTA 432
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810175|ref|XP_002872971.1| UDP-D-glucuronate 4-epimerase 2 [Arabidopsis lyrata subsp. lyrata] gi|297318808|gb|EFH49230.1| UDP-D-glucuronate 4-epimerase 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/436 (86%), Positives = 402/436 (92%), Gaps = 9/436 (2%)
Query: 4 LKQMSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSFIFLAVILIFFFRSP-SSN 62
+KQMSHLD+IPSTPGKFK PYF+R R+ SS+AKL FWS +F+ +I IFF+RSP SSN
Sbjct: 1 MKQMSHLDDIPSTPGKFK----PYFHRTRWQSSVAKLAFWSLVFVGLIFIFFYRSPVSSN 56
Query: 63 PLPSADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALKRR 122
P DPSRRSLRTY WGGPA+EKRVRSSARVR R G SVLVTGAAGFVGTHVSAALKRR
Sbjct: 57 P----DPSRRSLRTYSWGGPAWEKRVRSSARVRTRRGFSVLVTGAAGFVGTHVSAALKRR 112
Query: 123 GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLA 182
GDGVLGLDNFNDYYDPSLK+ARQALLERSG+F+VEGDIND ALLKKLF+VV FTHVMHLA
Sbjct: 113 GDGVLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLA 172
Query: 183 AQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKD 242
AQAGVRYAM+NP+SYVHSNIAG V+LLEVCK+ANPQPAIVWASSSSVYGLNT+VPFSEKD
Sbjct: 173 AQAGVRYAMENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTRVPFSEKD 232
Query: 243 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNR 302
RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL
Sbjct: 233 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKG 292
Query: 303 KSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362
K+I IFE +HGTVARDFTYIDDIVKGCL ALDTAEKSTGSGGKKRG AQLRVFNLGNTS
Sbjct: 293 KAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTS 352
Query: 363 PVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKK 422
PVPV+DLV+ILERLLKVKAKRNIMKLPRNGDV FTHANIS AQRELGYKPTT+LQTGLKK
Sbjct: 353 PVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTNLQTGLKK 412
Query: 423 FVRWYLSYYAGGKKAA 438
F RWYL YY GGKKAA
Sbjct: 413 FARWYLGYYNGGKKAA 428
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489543|ref|XP_002280994.2| PREDICTED: UDP-glucuronate 4-epimerase 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/437 (86%), Positives = 412/437 (94%), Gaps = 6/437 (1%)
Query: 2 SQLKQMSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSFIFLAVILIFFFRSPSS 61
SQLKQMSHLDNIPSTPGKFKM+K RLR+HSSLAKLTFWSF+F +I I F SPSS
Sbjct: 81 SQLKQMSHLDNIPSTPGKFKMEK-----RLRWHSSLAKLTFWSFVFSGLIFIVLFLSPSS 135
Query: 62 NPLPSADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALKR 121
+ L +DP+RRSLRT+ WGGPA+EKRVRSSA+VRARNGISVLVTGAAGFVGTHVSAALKR
Sbjct: 136 SSL-PSDPTRRSLRTHSWGGPAWEKRVRSSAKVRARNGISVLVTGAAGFVGTHVSAALKR 194
Query: 122 RGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHL 181
RGDGV+GLDNFNDYYDPSLK+ARQALLER+G+FIVEGDIND LLKKLF+VV+FTHVMHL
Sbjct: 195 RGDGVIGLDNFNDYYDPSLKRARQALLERTGVFIVEGDINDSKLLKKLFEVVAFTHVMHL 254
Query: 182 AAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEK 241
AAQAGVRYAM+NP+SYVHSNIAGLV+LLEVCK+ANPQPAIVWASSSSVYGLNTKVPFSE+
Sbjct: 255 AAQAGVRYAMENPSSYVHSNIAGLVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSER 314
Query: 242 DRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILN 301
DRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL
Sbjct: 315 DRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILK 374
Query: 302 RKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361
KSIPIFE+P+ GTVARDFTYIDDIVKGC+AALDTAEKSTGSGGKK+G AQLR+FNLGNT
Sbjct: 375 EKSIPIFEAPNRGTVARDFTYIDDIVKGCVAALDTAEKSTGSGGKKKGPAQLRIFNLGNT 434
Query: 362 SPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLK 421
SPVPV+DLVSILERLLKVKAKR ++K+PRNGDV FTHANISLAQRELGYKPTTDLQTGLK
Sbjct: 435 SPVPVTDLVSILERLLKVKAKRKMIKMPRNGDVQFTHANISLAQRELGYKPTTDLQTGLK 494
Query: 422 KFVRWYLSYYAGGKKAA 438
KFVRWYL YY+ G+K+A
Sbjct: 495 KFVRWYLKYYSAGEKSA 511
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15217591|ref|NP_171702.1| UDP-D-glucuronate 4-epimerase 2 [Arabidopsis thaliana] gi|75264107|sp|Q9LPC1.1|GAE2_ARATH RecName: Full=UDP-glucuronate 4-epimerase 2; AltName: Full=UDP-glucuronic acid epimerase 2 gi|8570451|gb|AAF76478.1|AC020622_12 Contains similarity to CAPI protein from Staphylococcus aureus gi|P39858 and contains a NAD dependent epimerase/dehydratase PF|01370 domain. ESTs gb|N97076, gb|AI997010 come from this gene [Arabidopsis thaliana] gi|12248041|gb|AAG50112.1|AF334734_1 putative nucleotide sugar epimerase [Arabidopsis thaliana] gi|332189243|gb|AEE27364.1| UDP-D-glucuronate 4-epimerase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/435 (86%), Positives = 401/435 (92%), Gaps = 7/435 (1%)
Query: 7 MSHLDNIPSTPGKFKM-DKSPYF-NRLRFHSSLAKLTFWSFIFLAVILIFFFRSPSSNPL 64
MSHLD+IPSTPGKFKM DKSP+F +R R+ SS+AKL FWS +F ++ IFF+RSP SNP
Sbjct: 1 MSHLDDIPSTPGKFKMMDKSPFFLHRTRWQSSVAKLAFWSLVFFGLLFIFFYRSPISNP- 59
Query: 65 PSADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALKRRGD 124
D SRRSLRTY WGGPA+EKRVRSSARVR RNG+SVLVTGAAGFVGTHVSAALKRRGD
Sbjct: 60 ---DSSRRSLRTYSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGD 116
Query: 125 GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQ 184
GVLGLDNFNDYYD SLK++RQALLERSG+FIVEGDIND++LLKKLF+VV FTHVMHLAAQ
Sbjct: 117 GVLGLDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQ 176
Query: 185 AGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244
AGVRYAM+NP SYVHSNIAG V+LLEVCK+ANPQPAIVWASSSSVYGLNTKVPFSEKDRT
Sbjct: 177 AGVRYAMENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRT 236
Query: 245 DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKS 304
DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL K+
Sbjct: 237 DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKA 296
Query: 305 IPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364
I IFE +HGTVARDFTYIDDIVKGCL ALDTAEKSTGSGGKKRG AQLRVFNLGNTSPV
Sbjct: 297 ISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPV 356
Query: 365 PVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFV 424
PV+DLVSILERLLKVKAKRN+MKLPRNGDVPFTHANIS AQRE GYKP+TDLQTGLKKFV
Sbjct: 357 PVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFV 416
Query: 425 RWYLSYY-AGGKKAA 438
RWYL YY GGKK A
Sbjct: 417 RWYLGYYKQGGKKVA 431
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 439 | ||||||
| TAIR|locus:2126846 | 430 | GAE3 "UDP-D-glucuronate 4-epim | 0.974 | 0.995 | 0.814 | 1.5e-186 | |
| TAIR|locus:2025472 | 434 | GAE2 "UDP-D-glucuronate 4-epim | 0.974 | 0.986 | 0.806 | 1.5e-184 | |
| TAIR|locus:2050921 | 437 | GAE4 "UDP-D-glucuronate 4-epim | 0.984 | 0.988 | 0.793 | 2.6e-182 | |
| TAIR|locus:2139134 | 436 | GAE5 "UDP-D-glucuronate 4-epim | 0.979 | 0.986 | 0.694 | 5.3e-159 | |
| TAIR|locus:2118711 | 429 | GAE1 "UDP-D-glucuronate 4-epim | 0.943 | 0.965 | 0.657 | 1.1e-142 | |
| TAIR|locus:2076066 | 460 | GAE6 "UDP-D-glucuronate 4-epim | 0.801 | 0.765 | 0.732 | 1.7e-139 | |
| TIGR_CMR|CBU_0844 | 339 | CBU_0844 "capsular polysacchar | 0.740 | 0.958 | 0.479 | 2.3e-78 | |
| UNIPROTKB|Q8E8H8 | 335 | wcvA "UDP-glucuronate 4-epimer | 0.740 | 0.970 | 0.488 | 1.6e-77 | |
| TIGR_CMR|SO_4686 | 335 | SO_4686 "NAD dependent epimera | 0.740 | 0.970 | 0.488 | 1.6e-77 | |
| TIGR_CMR|GSU_2241 | 336 | GSU_2241 "capsular polysacchar | 0.742 | 0.970 | 0.468 | 2.4e-76 |
| TAIR|locus:2126846 GAE3 "UDP-D-glucuronate 4-epimerase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1809 (641.9 bits), Expect = 1.5e-186, P = 1.5e-186
Identities = 355/436 (81%), Positives = 373/436 (85%)
Query: 4 LKQMSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSXXXXXXXXXXXXRSP-SSN 62
+KQMSHLD+IPSTPGKFK PYF+R R+ SS+AKL FWS RSP SSN
Sbjct: 1 MKQMSHLDDIPSTPGKFK----PYFHRTRWQSSVAKLAFWSLVFVGLIFIFFYRSPVSSN 56
Query: 63 PLPSADPSRRSLRTYDWGGPAFEKXXXXXXXXXXXNGISVLVTGAAGFVGTHVSAALKRR 122
P ADPSRRSLRTY WGGPA+EK G SVLVTGAAGFVGTHVSAALKRR
Sbjct: 57 P---ADPSRRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRR 113
Query: 123 GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLA 182
GDGVLGLDNFNDYYDPSLK+ARQALLERSG+F+VEGDIND ALLKKLF+VV FTHVMHLA
Sbjct: 114 GDGVLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLA 173
Query: 183 AQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKD 242
AQAGVRYAM+NP+SYVHSNIAG V+LLEVCK+ANPQPAIVWASSSSVYGLNTKVPFSEKD
Sbjct: 174 AQAGVRYAMENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKD 233
Query: 243 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNR 302
RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL
Sbjct: 234 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKG 293
Query: 303 KSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTS 362
K+I IFE +HGTVARDFTYIDDIVKGCL ALDTAE AQLRVFNLGNTS
Sbjct: 294 KAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTS 353
Query: 363 PVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKK 422
PVPV+DLV+ILERLLKVKAKRNIMKLPRNGDV FTHANIS AQRELGYKPTTDLQTGLKK
Sbjct: 354 PVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKK 413
Query: 423 FVRWYLSYYAGGKKAA 438
F RWYL YY GGKKAA
Sbjct: 414 FARWYLGYYNGGKKAA 429
|
|
| TAIR|locus:2025472 GAE2 "UDP-D-glucuronate 4-epimerase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1790 (635.2 bits), Expect = 1.5e-184, P = 1.5e-184
Identities = 351/435 (80%), Positives = 372/435 (85%)
Query: 7 MSHLDNIPSTPGKFKM-DKSPYF-NRLRFHSSLAKLTFWSXXXXXXXXXXXXRSPSSNPL 64
MSHLD+IPSTPGKFKM DKSP+F +R R+ SS+AKL FWS RSP SNP
Sbjct: 1 MSHLDDIPSTPGKFKMMDKSPFFLHRTRWQSSVAKLAFWSLVFFGLLFIFFYRSPISNP- 59
Query: 65 PSADPSRRSLRTYDWGGPAFEKXXXXXXXXXXXNGISVLVTGAAGFVGTHVSAALKRRGD 124
D SRRSLRTY WGGPA+EK NG+SVLVTGAAGFVGTHVSAALKRRGD
Sbjct: 60 ---DSSRRSLRTYSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGD 116
Query: 125 GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQ 184
GVLGLDNFNDYYD SLK++RQALLERSG+FIVEGDIND++LLKKLF+VV FTHVMHLAAQ
Sbjct: 117 GVLGLDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQ 176
Query: 185 AGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244
AGVRYAM+NP SYVHSNIAG V+LLEVCK+ANPQPAIVWASSSSVYGLNTKVPFSEKDRT
Sbjct: 177 AGVRYAMENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRT 236
Query: 245 DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKS 304
DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL K+
Sbjct: 237 DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKA 296
Query: 305 IPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPV 364
I IFE +HGTVARDFTYIDDIVKGCL ALDTAE AQLRVFNLGNTSPV
Sbjct: 297 ISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPV 356
Query: 365 PVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFV 424
PV+DLVSILERLLKVKAKRN+MKLPRNGDVPFTHANIS AQRE GYKP+TDLQTGLKKFV
Sbjct: 357 PVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFV 416
Query: 425 RWYLSYYA-GGKKAA 438
RWYL YY GGKK A
Sbjct: 417 RWYLGYYKQGGKKVA 431
|
|
| TAIR|locus:2050921 GAE4 "UDP-D-glucuronate 4-epimerase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1769 (627.8 bits), Expect = 2.6e-182, P = 2.6e-182
Identities = 345/435 (79%), Positives = 373/435 (85%)
Query: 7 MSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSXXXXXXXXXXXXRSPSS-NPLP 65
MS LD+IPS+PGKFKM+KS Y +RLRF SSL K F+S RSP S NP
Sbjct: 1 MSRLDDIPSSPGKFKMEKSSYLHRLRFQSSLTKFAFFSFFLLCLISLLFLRSPPSINPSS 60
Query: 66 SADPSRRSLRTYDWGGPAFEKXXXXXXX--XXXXNGISVLVTGAAGFVGTHVSAALKRRG 123
+DPSRRSLRT +GGPA+EK NGI+VLVTGAAGFVGTHVSAALKRRG
Sbjct: 61 PSDPSRRSLRTNTYGGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRG 120
Query: 124 DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAA 183
DGV+GLDNFNDYYDPSLK+AR+ALLERSGIFIVEGDIND+ LL+KLF +VSFTHVMHLAA
Sbjct: 121 DGVIGLDNFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAA 180
Query: 184 QAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243
QAGVRYAM+NP+SYVHSNIAG V+LLE+CK+ NPQPAIVWASSSSVYGLNTKVPFSEKD+
Sbjct: 181 QAGVRYAMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDK 240
Query: 244 TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRK 303
TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFT+DIL K
Sbjct: 241 TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGK 300
Query: 304 SIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSP 363
SI IFES +HGTVARDFTYIDDIVKGCLAALDTAE AQLRVFNLGNTSP
Sbjct: 301 SISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSP 360
Query: 364 VPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKF 423
VPVSDLV ILER LKVKAK+N++K+PRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKF
Sbjct: 361 VPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKF 420
Query: 424 VRWYLSYYAGGKKAA 438
VRWYLSYY+G KKAA
Sbjct: 421 VRWYLSYYSGDKKAA 435
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| TAIR|locus:2139134 GAE5 "UDP-D-glucuronate 4-epimerase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1549 (550.3 bits), Expect = 5.3e-159, P = 5.3e-159
Identities = 300/432 (69%), Positives = 338/432 (78%)
Query: 7 MSHLDNIPSTPGKFKMDKSPYFNRLRFHS--SLAKLTFWSXXXXXXXXXXXXRSPSSNPL 64
MSHLD++PSTPGK+K DK P + L H L+KLT W+ SP +P
Sbjct: 1 MSHLDDLPSTPGKYKTDKVPPYGILHHHRYLRLSKLTLWASLFLALFLFYLVLSPPPSPS 60
Query: 65 PSADPSRRSLRTYDWGGPAFEKXXXXXXXXXXXNGISVLVTGAAGFVGTHVSAALKRRGD 124
S+ +GG +EK G++VLVTGA+GFVGTHVS AL+RRGD
Sbjct: 61 RRNLNDSSSISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGD 120
Query: 125 GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQ 184
GVLGLDNFN YYDP LK+ARQ LLERSG+F+VEGDIND LL+KLFDVV FTHVMHLAAQ
Sbjct: 121 GVLGLDNFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQ 180
Query: 185 AGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244
AGVRYAMQNP SYV+SNIAG V+LLEV K+ANPQPAIVWASSSSVYGLN+KVPFSEKDRT
Sbjct: 181 AGVRYAMQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRT 240
Query: 245 DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKS 304
DQPASLYAATKKAGE IAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFT+DIL K+
Sbjct: 241 DQPASLYAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKT 300
Query: 305 IPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPV 364
I +FESPD G+VARDFTYIDDIVKGCL ALDTAE A R++NLGNTSPV
Sbjct: 301 ITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPV 360
Query: 365 PVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFV 424
PV+ LV+ILE+LLK+KAK+ IM LPRNGDV FTHANI+LAQ ELGYKP DL+TGLKKFV
Sbjct: 361 PVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFV 420
Query: 425 RWYLSYYAGGKK 436
+WY+ +Y G KK
Sbjct: 421 KWYMGFYTGSKK 432
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| TAIR|locus:2118711 GAE1 "UDP-D-glucuronate 4-epimerase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
Identities = 280/426 (65%), Positives = 318/426 (74%)
Query: 14 PSTPGKFKMDKSPYFNRL--RFHSSLAKLTFWSXXXXXXXXXXXXRSPSSNPLPSADPSR 71
PSTPGKFK+D+S NR R +S + + W+ S S D
Sbjct: 10 PSTPGKFKIDRS---NRQLHRCFASTSTMFLWALFLIALTASYL--SFQS----FVDSGS 60
Query: 72 RSLRTYDWGGPAFEKXXXXXXXXXXXNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131
R L T WGG +EK GISVLVTGA GFVG+HVS AL++RGDGV+GLDN
Sbjct: 61 RYL-TASWGGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGLDN 119
Query: 132 FNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAM 191
FN+YYDPSLK+AR++LL GIF+VEGD+ND LL KLFDVV+FTHVMHLAAQAGVRYA+
Sbjct: 120 FNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYAL 179
Query: 192 QNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLY 251
+NP SYVHSNIAGLV+LLE+CK ANPQPAIVWASSSSVYGLN KVPFSE DRTDQPASLY
Sbjct: 180 ENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASLY 239
Query: 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESP 311
AATKKAGEEI HTYNHIYGL++TGLRFFTVYGPWGRPDMAYF FTR+IL K I I+
Sbjct: 240 AATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRGK 299
Query: 312 DHGTVARDFTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVS 371
+ +ARDFTYIDDIVKGCL +LD++ A R+FNLGNTSPV V LV
Sbjct: 300 NRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVD 359
Query: 372 ILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
ILE+ LKVKAKRN +++P NGDVPFTHANIS A+ E GYKPTTDL+TGLKKFVRWYLSYY
Sbjct: 360 ILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLSYY 419
Query: 432 AGGKKA 437
KA
Sbjct: 420 GYNTKA 425
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| TAIR|locus:2076066 GAE6 "UDP-D-glucuronate 4-epimerase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1365 (485.6 bits), Expect = 1.7e-139, P = 1.7e-139
Identities = 258/352 (73%), Positives = 295/352 (83%)
Query: 80 GGPAFEKXXXXXXXXXXXNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS 139
GG A+EK +G+SVLVTGAAGFVG+H S AL++RGDGVLG DNFNDYYDPS
Sbjct: 92 GGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPS 151
Query: 140 LKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVH 199
LK+ARQ LLE+ +FIVEGD+ND LL+KLFDVV FTH++HLAAQAGVRYAM+NP SY+
Sbjct: 152 LKRARQELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIA 211
Query: 200 SNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259
SNIAG V+LLEV K ANPQPAIVWASSSSVYGLNT+ PFSE+ RTDQPASLYAATKKAGE
Sbjct: 212 SNIAGFVNLLEVAKAANPQPAIVWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGE 271
Query: 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319
EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFT+DIL+ KSI I+ + D+ VARD
Sbjct: 272 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARD 331
Query: 320 FTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKV 379
FTYIDDIVKGC+ ALDTAE AQLRV+NLGNTSPVPV LVSILE LL
Sbjct: 332 FTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGT 391
Query: 380 KAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
KAK++++K+PRNGDVP+THAN+SLA ++ GYKPTTDL GL+KFV+WY+ YY
Sbjct: 392 KAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYY 443
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| TIGR_CMR|CBU_0844 CBU_0844 "capsular polysaccharide biosynthesis protein I" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
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Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 161/336 (47%), Positives = 221/336 (65%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEG-DIN 161
LVTG AGF+G H++ L RGD +LGLDN NDYYD +LK+AR A L+ F D+
Sbjct: 9 LVTGCAGFIGFHLTKRLLARGDHILGLDNLNDYYDVNLKEARLAQLKEFPHFSFHKLDLA 68
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D + LF F V+HLAAQAGVRY++ NP +YV SN+ G +LE C++ + + +
Sbjct: 69 DRQGMTDLFQKHLFDTVVHLAAQAGVRYSLTNPYAYVDSNLVGFAHILEGCRHQSVKH-L 127
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V+ASSSSVYG N K PFSE D D P +LYAA+KKA E +AH+Y H++ L TGLRFFTV
Sbjct: 128 VFASSSSVYGANEKYPFSESDNVDHPIALYAASKKANELMAHSYAHLFQLPCTGLRFFTV 187
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD-----T 336
YGPWGRPDMA F FTR++L K I ++ +HG ++RDFTYIDDIV G L LD
Sbjct: 188 YGPWGRPDMALFKFTRNLLADKPIDVY---NHGKMSRDFTYIDDIVDGILLTLDHPPEPN 244
Query: 337 AEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPF 396
+ A R++N+G+ +P+ +++ ++ILE+ L KA +N + L + GDVP
Sbjct: 245 SAYSANQPNPAKSNAPYRIYNIGSNNPILLTNFIAILEKTLNKKAIKNFLPL-QPGDVPE 303
Query: 397 THANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432
T+A++S +++ Y+P T LQ G+K FV WYL Y++
Sbjct: 304 TYADVSQLEKDFQYRPRTPLQKGVKNFVEWYLQYFS 339
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| UNIPROTKB|Q8E8H8 wcvA "UDP-glucuronate 4-epimerase WcvA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 164/336 (48%), Positives = 220/336 (65%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLER-SGIFIVEGDIN 161
LVTGAAGF+G +VS L G V+G+DN NDYYD +LK AR A LE S ++ D+
Sbjct: 4 LVTGAAGFIGANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKLDLA 63
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D + KLF F V+HLAAQAGVRY++ NP +Y SN+ G +++LE C++ + +
Sbjct: 64 DREGIAKLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIEH-L 122
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V+ASSSSVYGLN K+PFS +D D P SLYAATKKA E ++HTY+H+Y L TGLRFFTV
Sbjct: 123 VYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFFTV 182
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD-----T 336
YGPWGRPDMA F FT+ IL ++I ++ +HG ++RDFTYIDDIV+G + D T
Sbjct: 183 YGPWGRPDMALFKFTKAILAGETIDVY---NHGDLSRDFTYIDDIVEGIIRVQDKPPSPT 239
Query: 337 AEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPF 396
+ A RVFN+GN SPV + D ++ LER L ++AK+ + + + GDV
Sbjct: 240 PDWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALERALGIEAKKQFLPM-QPGDVHA 298
Query: 397 THANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432
T A+ + +GYK D+ TG+ KFV WY ++YA
Sbjct: 299 TWADTEDLFKAVGYKSQVDIDTGVAKFVDWYRNFYA 334
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| TIGR_CMR|SO_4686 SO_4686 "NAD dependent epimerase/dehydratase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
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Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 164/336 (48%), Positives = 220/336 (65%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLER-SGIFIVEGDIN 161
LVTGAAGF+G +VS L G V+G+DN NDYYD +LK AR A LE S ++ D+
Sbjct: 4 LVTGAAGFIGANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKLDLA 63
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D + KLF F V+HLAAQAGVRY++ NP +Y SN+ G +++LE C++ + +
Sbjct: 64 DREGIAKLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIEH-L 122
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V+ASSSSVYGLN K+PFS +D D P SLYAATKKA E ++HTY+H+Y L TGLRFFTV
Sbjct: 123 VYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFFTV 182
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD-----T 336
YGPWGRPDMA F FT+ IL ++I ++ +HG ++RDFTYIDDIV+G + D T
Sbjct: 183 YGPWGRPDMALFKFTKAILAGETIDVY---NHGDLSRDFTYIDDIVEGIIRVQDKPPSPT 239
Query: 337 AEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPF 396
+ A RVFN+GN SPV + D ++ LER L ++AK+ + + + GDV
Sbjct: 240 PDWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALERALGIEAKKQFLPM-QPGDVHA 298
Query: 397 THANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432
T A+ + +GYK D+ TG+ KFV WY ++YA
Sbjct: 299 TWADTEDLFKAVGYKSQVDIDTGVAKFVDWYRNFYA 334
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| TIGR_CMR|GSU_2241 GSU_2241 "capsular polysaccharide biosynthesis protein I" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 158/337 (46%), Positives = 218/337 (64%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGD 159
S+LVTGAAGF+G H++ L RGD V+GLDN NDYYD +LK R LE R G V
Sbjct: 3 SILVTGAAGFIGFHLTKRLLDRGDRVVGLDNLNDYYDVNLKLDRLRQLEGREGFSFVRTS 62
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
+ D L+ LF F V++LAAQAGVRY++ NP++YV SN+ G +++LE C++ +
Sbjct: 63 LADRPALEDLFAGQRFDVVVNLAAQAGVRYSITNPHAYVDSNLVGFINILEGCRHHGVKH 122
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
+V+ASSSSVYG NT +PFS D P SLYAATKKA E +AHTY+ +YGL TGLRFF
Sbjct: 123 -LVYASSSSVYGANTAMPFSIHHNVDHPVSLYAATKKANELMAHTYSSLYGLPTTGLRFF 181
Query: 280 TVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD-TAE 338
TVYGPWGRPDMA F FT+ IL + I ++ + G + RDFTY+DDIV+G +D T E
Sbjct: 182 TVYGPWGRPDMALFLFTKAILEGRPIDVY---NFGKMQRDFTYVDDIVEGVTRVMDRTPE 238
Query: 339 XXXXXXXXX----XXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDV 394
A R++N+GN +PV + + +E+ L + A++N++ L + GDV
Sbjct: 239 PNPAWSGARPDPGTSYAPYRIYNIGNNNPVELLAFIEAIEQNLGITAQKNLLPL-QAGDV 297
Query: 395 PFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
P T+A++ ++G+KP T + G+++FV WY YY
Sbjct: 298 PATYADVDDLMNDVGFKPATPIGEGIERFVEWYRGYY 334
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O81312 | GAE3_ARATH | 5, ., 1, ., 3, ., 6 | 0.8715 | 0.9749 | 0.9953 | yes | no |
| Q9STI6 | GAE5_ARATH | 5, ., 1, ., 3, ., 6 | 0.7373 | 0.9840 | 0.9908 | no | no |
| Q9LPC1 | GAE2_ARATH | 5, ., 1, ., 3, ., 6 | 0.8643 | 0.9749 | 0.9861 | no | no |
| O22141 | GAE4_ARATH | 5, ., 1, ., 3, ., 6 | 0.8298 | 0.9840 | 0.9885 | no | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GAE3 | GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3); UDP-glucuronate 4-epimerase/ catalytic; Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase. ; Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components (430 aa) | ||||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
| UGD1 | UGD1 (UDP-GLUCOSE DEHYDROGENASE 1); NAD or NADH binding / UDP-glucose 6-dehydrogenase/ binding [...] (481 aa) | • | • | • | 0.979 | ||||||
| AT3G29360 | UDP-glucose 6-dehydrogenase, putative; UDP-glucose 6-dehydrogenase, putative; FUNCTIONS IN- in [...] (480 aa) | • | • | • | 0.974 | ||||||
| GAUT1 | GAUT1 (GALACTURONOSYLTRANSFERASE 1); polygalacturonate 4-alpha-galacturonosyltransferase/ trans [...] (673 aa) | • | • | 0.943 | |||||||
| AT5G39320 | UDP-glucose 6-dehydrogenase, putative; UDP-glucose 6-dehydrogenase, putative; FUNCTIONS IN- in [...] (480 aa) | • | • | • | 0.925 | ||||||
| AT5G15490 | UDP-glucose 6-dehydrogenase, putative; UDP-glucose 6-dehydrogenase, putative; FUNCTIONS IN- in [...] (480 aa) | • | • | • | 0.923 | ||||||
| GAUT12 | GAUT12 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase/ tra [...] (535 aa) | • | 0.899 | ||||||||
| GAUT4 | GAUT4 (Galacturonosyltransferase 4); polygalacturonate 4-alpha-galacturonosyltransferase/ trans [...] (616 aa) | • | 0.899 | ||||||||
| GAUT14 | GAUT14 (Galacturonosyltransferase 14); polygalacturonate 4-alpha-galacturonosyltransferase/ tra [...] (532 aa) | • | 0.899 | ||||||||
| GAUT3 | GAUT3 (Galacturonosyltransferase 3); polygalacturonate 4-alpha-galacturonosyltransferase/ trans [...] (680 aa) | • | 0.899 | ||||||||
| GAUT15 | GAUT15 (Galacturonosyltransferase 15); polygalacturonate 4-alpha-galacturonosyltransferase/ tra [...] (540 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 439 | |||
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 1e-178 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 7e-78 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 1e-68 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 2e-52 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 3e-51 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 4e-50 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 2e-48 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 9e-41 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 4e-40 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 3e-37 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 2e-35 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 3e-33 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 2e-32 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 5e-32 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 2e-30 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 2e-30 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 3e-30 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 4e-30 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 2e-29 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 2e-29 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 3e-29 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 3e-27 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 9e-26 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 1e-24 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 1e-24 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 5e-21 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 2e-18 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 6e-18 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 1e-17 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 3e-17 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 1e-16 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 1e-16 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 5e-16 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 6e-16 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 6e-15 | |
| cd05261 | 248 | cd05261, CAPF_like_SDR_e, capsular polysaccharide | 1e-14 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 2e-14 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 2e-14 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 2e-12 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 2e-12 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 1e-11 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 2e-11 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 4e-11 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 2e-10 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 6e-10 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 1e-09 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 1e-09 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 2e-09 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 2e-09 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 9e-09 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 1e-08 | |
| PLN02725 | 306 | PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5- | 2e-08 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 3e-08 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 5e-08 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 2e-07 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 3e-07 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 4e-07 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 8e-06 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 1e-05 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 5e-05 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 5e-05 | |
| PRK11908 | 347 | PRK11908, PRK11908, NAD-dependent epimerase/dehydr | 7e-05 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 8e-05 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 9e-05 | |
| PLN02572 | 442 | PLN02572, PLN02572, UDP-sulfoquinovose synthase | 1e-04 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 2e-04 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 7e-04 | |
| cd05266 | 251 | cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | 8e-04 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 8e-04 | |
| cd09812 | 339 | cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid | 0.001 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 0.002 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 0.002 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 0.002 | |
| pfam05368 | 232 | pfam05368, NmrA, NmrA-like family | 0.004 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 501 bits (1291), Expect = e-178
Identities = 185/337 (54%), Positives = 237/337 (70%), Gaps = 11/337 (3%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIF-IVEG 158
+ +LVTGAAGF+G HV+ L RGD V+G+DN NDYYD LK+AR LL +SG F V+G
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLERGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVKG 60
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
D+ D L++LF F V+HLAAQAGVRY+++NP++YV SNI G ++LLE+C++ +
Sbjct: 61 DLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFGVK 120
Query: 219 PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRF 278
+V+ASSSSVYGLNTK+PFSE DR D P SLYAATKKA E +AHTY+H+YG+ TGLRF
Sbjct: 121 -HLVYASSSSVYGLNTKMPFSEDDRVDHPISLYAATKKANELMAHTYSHLYGIPTTGLRF 179
Query: 279 FTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338
FTVYGPWGRPDMA F FT+ IL K I +F G ++RDFTYIDDIV+G + ALDT
Sbjct: 180 FTVYGPWGRPDMALFLFTKAILEGKPIDVFN---DGNMSRDFTYIDDIVEGVVRALDTPA 236
Query: 339 KSTGSG-----GKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGD 393
K + A RV+N+GN SPV + D + LE+ L KAK+N + + + GD
Sbjct: 237 KPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEALEKALGKKAKKNYLPMQK-GD 295
Query: 394 VPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430
VP T+A+IS QR LGYKP T L+ G+K+FV WY
Sbjct: 296 VPETYADISKLQRLLGYKPKTSLEEGVKRFVEWYKEN 332
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 7e-78
Identities = 107/330 (32%), Positives = 163/330 (49%), Gaps = 31/330 (9%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
VLVTG AGF+G+H+ L RG V+ LDN + +L + + + +EGDI
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEVKPNVK------FIEGDIR 55
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D L++ F+ V +V H AAQA V ++++P N+ G ++LLE + A +
Sbjct: 56 DDELVEFAFEGV--DYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVK-RF 112
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V+ASSSSVYG +P E P S YA +K AGE + +YGL LR+F V
Sbjct: 113 VYASSSSVYGDPPYLPKDEDHPP-NPLSPYAVSKYAGELYCQVFARLYGLPTVSLRYFNV 171
Query: 282 YGPWGRPDMAYF----FFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337
YGP P+ Y F L + I+ G RDFTY++D+V+ L A
Sbjct: 172 YGPRQDPNGGYAAVIPIFIERALKGEPPTIYGD---GEQTRDFTYVEDVVEANLLAA--- 225
Query: 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFT 397
+ G V+N+G V++L ++ +L + + + PR GDV +
Sbjct: 226 -TAGAGGE---------VYNIGTGKRTSVNELAELIREILGKELEP-VYAPPRPGDVRHS 274
Query: 398 HANISLAQRELGYKPTTDLQTGLKKFVRWY 427
A+IS A++ LG++P + GL+ V W+
Sbjct: 275 LADISKAKKLLGWEPKVSFEEGLRLTVEWF 304
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 220 bits (561), Expect = 1e-68
Identities = 102/338 (30%), Positives = 153/338 (45%), Gaps = 32/338 (9%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTG AGF+G+H+ L G V GLD D DP SG+ V D+
Sbjct: 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPL----------LSGVEFVVLDLT 52
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAM-QNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D L+ +L V V+HLAAQ+ V + +P ++ N+ G ++LLE + A +
Sbjct: 53 DRDLVDELAKGVP-DAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKR- 110
Query: 221 IVWASS-SSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
V+ASS S VYG +P E +P + Y +K A E++ Y +YGL + LR F
Sbjct: 111 FVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPF 170
Query: 280 TVYGPWGRPDMAYFFFTRDILN-RKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338
VYGP +PD++ + I K PI G+ RDF Y+DD+ L AL+ +
Sbjct: 171 NVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPD 230
Query: 339 KSTGSGGKKRGRAQLRVFNLGN-TSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFT 397
VFN+G+ T+ + V +L + + KA +
Sbjct: 231 --------------GGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLRE 276
Query: 398 H--ANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433
+IS A+ LG++P L+ GL + W L
Sbjct: 277 GKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKLEL 314
|
Length = 314 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 2e-52
Identities = 84/261 (32%), Positives = 118/261 (45%), Gaps = 31/261 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTG GF+G+H+ L + G V+ L ++ R L I EGD+
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVIVL----------GRRRRSESLNTGRIRFHEGDLT 50
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D L++L V V+HLAAQ+GV + ++P ++ +N+ G + LLE + A
Sbjct: 51 DPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGV-KRF 109
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V+ASSS VYG P +E P S YAA K A E + Y YGL LR F V
Sbjct: 110 VFASSSEVYGDVADPPITEDTPLG-PLSPYAAAKLAAERLVEAYARAYGLRAVILRLFNV 168
Query: 282 YGPW---GRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338
YGP R IL K I + GT RDF Y+DD+ + L AL+ +
Sbjct: 169 YGPGNPDPFVTHVIPALIRRILEGKPILLL---GDGTQRRDFLYVDDVARAILLALEHPD 225
Query: 339 KSTGSGGKKRGRAQLRVFNLG 359
++N+G
Sbjct: 226 GG-------------EIYNIG 233
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 3e-51
Identities = 103/349 (29%), Positives = 153/349 (43%), Gaps = 51/349 (14%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNF-NDYYDPSLKKARQALLERSGIFI--VEG 158
VLVTG AG++G+H L G V+ LDN N + R+AL I I EG
Sbjct: 2 VLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGH--------REALPRIEKIRIEFYEG 53
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
DI D A L K+F V+H AA V ++Q P Y +N+ G ++LLE + +
Sbjct: 54 DIRDRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGVK 113
Query: 219 PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRF 278
V++SS++VYG VP +E+ P + Y TK E+I GL+ LR+
Sbjct: 114 N-FVFSSSAAVYGEPETVPITEEAPL-NPTNPYGRTKLMVEQILRDLAKAPGLNYVILRY 171
Query: 279 FTVYG--PWGR------------PDMAYFFFTRDILNRKSIPIF----ESPDHGTVARDF 320
F G P G P + R R+ + IF +PD GT RD+
Sbjct: 172 FNPAGAHPSGLIGEDPQIPNNLIPYVLQVALGR----REKLAIFGDDYPTPD-GTCVRDY 226
Query: 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLL--K 378
++ D+ + AL+ E GS ++NLG V ++V E++
Sbjct: 227 IHVVDLADAHVLALEKLENGGGS----------EIYNLGTGRGYSVLEVVEAFEKVSGKP 276
Query: 379 VKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
+ + + R GD A+ S A+ ELG+KP DL+ + W
Sbjct: 277 IPYE---IAPRRAGDPASLVADPSKAREELGWKPKRDLEDMCEDAWNWQ 322
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 4e-50
Identities = 76/260 (29%), Positives = 110/260 (42%), Gaps = 62/260 (23%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTG AGF+G+H+ L RG V+ +D
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDRL----------------------------- 31
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
V+HLAA GV + NP+ +N+ G ++LLE + A +
Sbjct: 32 --------------DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKR-F 76
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V+ASS+SVYG +P E+ +P S Y +K A E + +Y YGL + LR V
Sbjct: 77 VYASSASVYGSPEGLPEEEETPP-RPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANV 135
Query: 282 YGPWGRP--DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339
YGP RP D F R L K + +F G RDF ++DD+V+ L AL+ +
Sbjct: 136 YGPGQRPRLDGVVNDFIRRALEGKPLTVFGG---GNQTRDFIHVDDVVRAILHALENPLE 192
Query: 340 STGSGGKKRGRAQLRVFNLG 359
V+N+G
Sbjct: 193 GG------------GVYNIG 200
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 2e-48
Identities = 98/358 (27%), Positives = 160/358 (44%), Gaps = 55/358 (15%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VLVTG AG++G+H L + G V+ LDN + + ALL+ F EGD+
Sbjct: 2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLS-------NGHKIALLKLQFKF-YEGDL 53
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D ALL +F+ V+H AA V ++QNP Y +N+ G ++L+E +
Sbjct: 54 LDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKK- 112
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+++S+++VYG T P SE P + Y +K EEI + LR+F
Sbjct: 113 FIFSSTAAVYGEPTTSPISETSPLA-PINPYGRSKLMSEEILRDAAKANPFKVVILRYFN 171
Query: 281 VYG--PWGR------------PDMAYFFFTRDILNRKSIPIF----ESPDHGTVARDFTY 322
V G P G P A + R + IF ++ D GT RD+ +
Sbjct: 172 VAGACPDGTLGQRYPGATLLIPVAAEAALGK----RDKLFIFGDDYDTKD-GTCIRDYIH 226
Query: 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERL----LK 378
+DD+ + AL ++ + +FNLG+ + V +++ +++ +
Sbjct: 227 VDDLADAHVLALKYLKEGGSN----------NIFNLGSGNGFSVLEVIEAAKKVTGRDIP 276
Query: 379 VK-AKRNIMKLPRNGDVPFTHANISLAQRELGYKPT-TDLQTGLKKFVRWYLSYYAGG 434
V+ A R R GD A+ S A++ LG++PT DL+ +K W+ + G
Sbjct: 277 VEIAPR------RAGDPAILVADSSKARQILGWQPTYDDLEDIIKDAWDWHQQRHGDG 328
|
Length = 329 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 9e-41
Identities = 97/329 (29%), Positives = 148/329 (44%), Gaps = 33/329 (10%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ G GF+G+H+ AL G V D Y+ L G+ ++GD
Sbjct: 1 RVLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYELPL----------GGVDYIKGDY 50
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ A L+ + V+HLA+ + +NP + +N+A V LLE C A
Sbjct: 51 ENRADLESALVGIDT--VIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKI 108
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
I +S +VYG+ ++P SE D T P S Y +K A E+ Y ++YGL T LR
Sbjct: 109 IFASSGGTVYGVPEQLPISESDPTL-PISSYGISKLAIEKYLRLYQYLYGLDYTVLRISN 167
Query: 281 VYGPWGRPDMAYFF---FTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337
YGP RPD IL + I I+ + RD+ YIDD+V+ +A
Sbjct: 168 PYGPGQRPDGKQGVIPIALNKILRGEPIEIWGDGE---SIRDYIYIDDLVEALMA---LL 221
Query: 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFT 397
VFN+G+ +++L++ +E++ + I R DVP
Sbjct: 222 RSKGLE----------EVFNIGSGIGYSLAELIAEIEKVTGRSVQ-VIYTPARTTDVPKI 270
Query: 398 HANISLAQRELGYKPTTDLQTGLKKFVRW 426
+IS A+ ELG+ P L+ GL+K +W
Sbjct: 271 VLDISRARAELGWSPKISLEDGLEKTWQW 299
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 4e-40
Identities = 99/342 (28%), Positives = 153/342 (44%), Gaps = 36/342 (10%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTG AG++G+H L G V+ LDN ++ +L + + VEGD+
Sbjct: 2 ILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALP----RGERITPVTFVEGDLR 57
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D LL +LF+ V+H A V ++Q P Y +N+ G ++LLE + A +
Sbjct: 58 DRELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKK-F 116
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI-YGLSLTGLRFFT 280
+++SS++VYG + +P SE D P + Y +K E+I S LR+F
Sbjct: 117 IFSSSAAVYGEPSSIPISE-DSPLGPINPYGRSKLMSEQILRDLQKADPDWSYVILRYFN 175
Query: 281 VYG--PWGRPDMAYFFFTRDIL--------NRKSIPIF----ESPDHGTVARDFTYIDDI 326
V G P G T I R + IF +PD GT RD+ ++ D+
Sbjct: 176 VAGAHPSGDIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPD-GTCVRDYIHVMDL 234
Query: 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM 386
LAAL+ GS V+NLG V +++ +++ +
Sbjct: 235 ADAHLAALEYLLNGGGS----------HVYNLGYGQGFSVLEVIEAFKKVSGKDFPVEL- 283
Query: 387 KLPRN-GDVPFTHANISLAQRELGYKPT-TDLQTGLKKFVRW 426
PR GD A+ S +RELG++P TDL+ +K RW
Sbjct: 284 -APRRPGDPASLVADASKIRRELGWQPKYTDLEEIIKDAWRW 324
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 3e-37
Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 40/340 (11%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
+VLVTGA GF+G+H++ L R G V LD +N + L + GD+
Sbjct: 1 NVLVTGADGFIGSHLTERLLREGHEVRALDIYNSFNSWGLLDNA----VHDRFHFISGDV 56
Query: 161 NDMALLKKLFDVVSFTH-VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLE-VCKNANPQ 218
D + ++ L V V HLAA + Y+ P SYV +N+ G +++LE C +
Sbjct: 57 RDASEVEYL---VKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKR 113
Query: 219 PAIVWASSSSVYGLNTKVPFSEKD---RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTG 275
+V S+S VYG VP E ++P S Y+A+K+ + +A++Y +GL +T
Sbjct: 114 --VVHTSTSEVYGTAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVTI 171
Query: 276 LRFFTVYGPWGRPDMAYF---FFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLA 332
+R F YGP R ++ + ++ I + + G+ RDF ++ D +G +
Sbjct: 172 IRPFNTYGP--RQSARAVIPTIISQRAIGQRLINLGD----GSPTRDFNFVKDTARGFID 225
Query: 333 ALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSD-LVSILERLLK----VKAKRNIMK 387
LD E A + N G+ + + + V ++ L + +
Sbjct: 226 ILDAIE------------AVGEIINNGSGEEISIGNPAVELIVEELGEMVLIVYDDHREY 273
Query: 388 LPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
P +V +I A+R LG++P L+ GL++ + W+
Sbjct: 274 RPGYSEVERRIPDIRKAKRLLGWEPKYSLRDGLRETIEWF 313
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-35
Identities = 91/357 (25%), Positives = 148/357 (41%), Gaps = 51/357 (14%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY----DPSLKKARQALLERSGIFIV 156
VL+TG AGF+G++++ ++G V+G DN LK R E G+ V
Sbjct: 2 RVLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFGNLAWLKANR----EDGGVRFV 57
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
GDI + L+ LF+ + ++H AAQ V + +P +N G +++LE +
Sbjct: 58 HGDIRNRNDLEDLFEDIDL--IIHTAAQPSVTTSASSPRLDFETNALGTLNVLEAARQHA 115
Query: 217 PQPAIVWASSSSVYG-LNTKVP-------------------FSEKDRTDQPASLYAATKK 256
P ++ S++ VYG L +P SE D SLY A+K
Sbjct: 116 PNAPFIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESFPLDFSHSLYGASKG 175
Query: 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPW--GRPDMAYF-FFTRDILNRKSIPIFESPDH 313
A ++ Y I+GL R + GP G D + +F + + K + IF
Sbjct: 176 AADQYVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAYFLKCAVTGKPLTIFG--YG 233
Query: 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVS--DLVS 371
G RD + D+V L ++ G VFN+G VS +L++
Sbjct: 234 GKQVRDVLHSADLVNLYLRQFQNPDRRKG-----------EVFNIGGGRENSVSLLELIA 282
Query: 372 ILERLLKVKAKRNIMKLP-RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
+ E + K + K R GD + ++I + + G+KP D + L + W
Sbjct: 283 LCEEITGRKMESY--KDENRPGDQIWYISDIRKIKEKPGWKPERDPREILAEIYAWI 337
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 3e-33
Identities = 98/339 (28%), Positives = 174/339 (51%), Gaps = 24/339 (7%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLER--SGIFIVEGDI 160
L+TG AGF+G+ + L V+GLDNF+ Y +L R ++ E S ++GDI
Sbjct: 19 LITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDI 78
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+K V + V+H AA V ++++P + +NI G +++L ++A+ +
Sbjct: 79 RKFTDCQKACKNVDY--VLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-S 135
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+A+SSS YG + +P E +R +P S YA TK E A + Y + GLR+F
Sbjct: 136 FTYAASSSTYGDHPDLPKIE-ERIGRPLSPYAVTKYVNELYADVFARSYEFNAIGLRYFN 194
Query: 281 VYGPWGRPDMAY-FFFTRDILNR-KSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338
V+G P+ AY R IL+ K PI+ + D G+ +RDF YI+++++ L + T +
Sbjct: 195 VFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGD-GSTSRDFCYIENVIQANLLSATTND 253
Query: 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKV-----KAKRNIMKLPRNGD 393
++ + +V+N+ +++L ++ L + I K R+GD
Sbjct: 254 LASKN----------KVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGD 303
Query: 394 VPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432
V + A+I+ + L Y+P D++ GLK+ ++WY+ ++
Sbjct: 304 VKHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYIDKHS 342
|
Length = 348 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 2e-32
Identities = 92/335 (27%), Positives = 155/335 (46%), Gaps = 32/335 (9%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDG--VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+LVTG AGF+G++ L + ++ LD Y +L+ + V+GD
Sbjct: 3 ILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLT--YAGNLENLE-DVSSSPRYRFVKGD 59
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
I D L+ +LF+ V+H AA++ V ++ +P ++ +N+ G +LLE + +
Sbjct: 60 ICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRTNVLGTYTLLEAARKYGVK- 118
Query: 220 AIVWASSSSVYG-LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRF 278
V S+ VYG L F+E P S Y+A+K A + + Y+ YGL + R
Sbjct: 119 RFVHISTDEVYGDLLDDGEFTETSPLA-PTSPYSASKAAADLLVRAYHRTYGLPVVITRC 177
Query: 279 FTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA--RDFTYIDDIVKGCLAALDT 336
YGP+ P+ F + L+ K +PI +G RD+ Y++D + L
Sbjct: 178 SNNYGPYQFPEKLIPLFILNALDGKPLPI-----YGDGLNVRDWLYVEDHARAIELVL-- 230
Query: 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP-RNG-DV 394
++GR ++N+G + + +LV ++ LL I + R G D
Sbjct: 231 ----------EKGRV-GEIYNIGGGNELTNLELVKLILELLGKDESL-ITYVKDRPGHDR 278
Query: 395 PFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
+ + S +RELG++P + GL+K VRWYL
Sbjct: 279 RYA-IDSSKIRRELGWRPKVSFEEGLRKTVRWYLE 312
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-32
Identities = 84/326 (25%), Positives = 140/326 (42%), Gaps = 27/326 (8%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTG AGF+G+H+ L G+ V+ +DN + ++ F+
Sbjct: 2 ILVTGGAGFIGSHLVDRLLEEGNEVVVVDNL---SSGRRENIEPEFENKAFRFVKR---- 54
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D+ V HLAA VR +P+ + N+ ++LE + + I
Sbjct: 55 DLLDTADKVAKKDGDTVFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVK-RI 113
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V+ASSS+VYG KV + +D P S+Y A+K A E + Y H++G RF +
Sbjct: 114 VFASSSTVYG-EAKVIPTPEDYPPLPISVYGASKLAAEALISAYAHLFGFQAWIFRFANI 172
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKST 341
GP + Y F + N + + G + + Y+ D V L A + + +
Sbjct: 173 VGPRSTHGVIYDFINKLKRNPNELEVL---GDGRQRKSYLYVSDCVDAMLLAWEKSTEGV 229
Query: 342 GSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN--GDVPFTHA 399
+FNLGN + V+++ I+ L +K + R GDVP+
Sbjct: 230 N------------IFNLGNDDTISVNEIAEIVIEELGLKPRFKYSGGDRGWKGDVPYMRL 277
Query: 400 NISLAQRELGYKPTTDLQTGLKKFVR 425
+I + LG+KP + + ++K VR
Sbjct: 278 DIEKL-KALGWKPRYNSEEAVRKTVR 302
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 91/339 (26%), Positives = 150/339 (44%), Gaps = 32/339 (9%)
Query: 101 SVLVTGAAGFVGTH-VSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEG 158
+LVTG AGF+G++ V L + D V+ LD Y + + + V+G
Sbjct: 2 KILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLT--Y-AGNLENLADVEDSPRYRFVQG 58
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
DI D L+ +LF V+H AA++ V ++ P ++ +N+ G +LLE + +
Sbjct: 59 DICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGK 118
Query: 219 PAIVWASSSSVYG--LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGL 276
S+ VYG F+E + P+S Y+A+K A + + Y YGL T
Sbjct: 119 FRFHHISTDEVYGDLGLDDDAFTETTPYN-PSSPYSASKAASDLLVRAYVRTYGLPATIT 177
Query: 277 RFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336
R YGP+ P+ + L K +P++ RD+ Y++D + A+D
Sbjct: 178 RCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQ---IRDWLYVEDHCR----AIDL 230
Query: 337 -AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLK--VKAKRNIMKL--PRN 391
K K G +N+G + ++V + LL R+++ R
Sbjct: 231 VLTKG------KIG----ETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRP 280
Query: 392 G-DVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
G D + + S +RELG++P +TGL+K V WYL
Sbjct: 281 GHDRRYA-IDASKIKRELGWRPQETFETGLRKTVDWYLD 318
|
Length = 340 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 77/345 (22%), Positives = 128/345 (37%), Gaps = 49/345 (14%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGL-----DNFNDYYDPSLKKARQALLERSGIFIV 156
L+TG G G++++ L +G V G+ D D + I +
Sbjct: 2 ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTDRIDHLYINKDR-------ITLH 54
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
GD+ D + L++ + V + HLAAQ+ V+ + +P N G ++LLE +
Sbjct: 55 YGDLTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILG 114
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGL 276
ASSS YG ++P SE +P S YA +K + I Y YGL
Sbjct: 115 LDARFYQASSSEEYGKVQELPQSE-TTPFRPRSPYAVSKLYADWITRNYREAYGLFAVNG 173
Query: 277 RFFTVYGPWGRPDMAYFFFTRDI------LNRKSIPIFESPDHGTVA--RDFTYIDDIVK 328
R F GP R + F TR I + P+ + G + RD+ D V+
Sbjct: 174 RLFNHEGP-RRGET---FVTRKITRQVARIKAGLQPVLKL---GNLDAKRDWGDARDYVE 226
Query: 329 G-CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLL----KVKAKR 383
L G + + V + V + ++ +
Sbjct: 227 AYWLLLQ------QGEPD---------DYVIATGETHSVREFVELAFEESGLTGDIEVEI 271
Query: 384 NIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYL 428
+ R +V + S A+ ELG+KP + +++ + L
Sbjct: 272 DPRYF-RPTEVDLLLGDPSKAREELGWKPEVSFEELVREMLDADL 315
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-30
Identities = 89/349 (25%), Positives = 146/349 (41%), Gaps = 87/349 (24%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN--------DYYDPSLKKARQALLERSGI 153
VLVTGA GF+G+H+ AL R+G V +N D P +K I
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEVKDK---------I 51
Query: 154 FIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCK 213
+V GDI D ++K + V HLAA + Y+ P+SYV +N+ G +++L+ +
Sbjct: 52 EVVTGDIRDPDSVRKA--MKGCDVVFHLAALIAIPYSYIAPDSYVDTNVTGTLNVLQAAR 109
Query: 214 NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSL 273
+ + +V S+S VYG VP EK Q S Y+A+K +++A ++ + +
Sbjct: 110 DLGVE-KVVHTSTSEVYGTAQYVPIDEKHPL-QGQSPYSASKIGADQLALSFYRSFNTPV 167
Query: 274 TGLRFFTVYGPWGRPDMAYFFFTRDILNRKS----IP-----IFE----------SPDHG 314
T +R F YGP R+S IP I SP
Sbjct: 168 TIIRPFNTYGP-----------------RQSARAVIPTIITQIASGKRRIKLGSLSP--- 207
Query: 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILE 374
RDF Y+ D V+G +A + ++K+ G V N+G+ + + D V ++
Sbjct: 208 --TRDFNYVTDTVRGFIAIAE-SDKTVG-----------EVINIGSNFEISIGDTVKLIA 253
Query: 375 RLLKVKAK--------RNIMKLPRNGDVPFTHANISLAQRELGYKPTTD 415
++ + + R P +V + S + G++P
Sbjct: 254 EIMGSEVEIETDEERLR-----PEKSEVERLWCDNSKIKELTGWQPKYS 297
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 4e-30
Identities = 90/334 (26%), Positives = 150/334 (44%), Gaps = 29/334 (8%)
Query: 101 SVLVTGAAGFVGTH-VSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEG 158
+LVTG AGF+G++ V L D V+ LD Y +L+ L + V+G
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLT--YAGNLENLAD-LEDNPRYRFVKG 57
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
DI D L+ +LF V+H AA++ V ++ P +++ +N+ G +LLE + +
Sbjct: 58 DIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHE 117
Query: 219 PAIVWASSSSVYG-LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 277
S+ VYG L F+E P+S Y+A+K A + + Y+ YGL R
Sbjct: 118 FRFHHISTDEVYGDLEKGDAFTETTPL-APSSPYSASKAASDHLVRAYHRTYGLPALITR 176
Query: 278 FFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337
YGP+ P+ + L K +P++ G RD+ Y++D + L+
Sbjct: 177 CSNNYGPYQFPEKLIPLMITNALAGKPLPVYGD---GQQVRDWLYVEDHCRAIYLVLE-- 231
Query: 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL--PRNG-DV 394
+GR +N+G + ++V + LL +++ R G D
Sbjct: 232 ----------KGRVG-ETYNIGGGNERTNLEVVETILELL--GKDEDLITHVEDRPGHDR 278
Query: 395 PFTHANISLAQRELGYKPTTDLQTGLKKFVRWYL 428
+ + S +RELG+ P + GL+K V+WYL
Sbjct: 279 RYA-IDASKIKRELGWAPKYTFEEGLRKTVQWYL 311
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 83/334 (24%), Positives = 144/334 (43%), Gaps = 40/334 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIF-IVEGDI 160
+L+TG AGF+G+H+ L G V+ +DNF + +K L F + D+
Sbjct: 3 ILITGGAGFLGSHLCDRLLEDGHEVICVDNFF-----TGRKRNIEHLIGHPNFEFIRHDV 57
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ L+ D + HLA A + NP + +N+ G +++L + K +
Sbjct: 58 TEPLYLE--VDQ-----IYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGAR-- 108
Query: 221 IVWASSSSVYGLNTKVPFSEKDR----TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGL 276
++ AS+S VYG P E P S Y K+ E + Y+ +G+ +
Sbjct: 109 VLLASTSEVYGDPEVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVDVRIA 168
Query: 277 RFFTVYGPWGRPDMAYFF--FTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334
R F YGP P+ F L + I ++ GT R F Y+ D+V+G + +
Sbjct: 169 RIFNTYGPRMHPNDGRVVSNFIVQALRGEPITVYGD---GTQTRSFQYVSDLVEGLIRLM 225
Query: 335 DTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDV 394
++ NLGN + +L ++++L +K I+ LP D
Sbjct: 226 NSDYFGG-------------PVNLGNPEEFTILELAELVKKL--TGSKSEIVFLPLPEDD 270
Query: 395 PFTH-ANISLAQRELGYKPTTDLQTGLKKFVRWY 427
P +IS A+ LG++P L+ GL++ + ++
Sbjct: 271 PKRRRPDISKAKELLGWEPKVPLEEGLRRTIEYF 304
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 92/342 (26%), Positives = 135/342 (39%), Gaps = 48/342 (14%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
LVTGA GF+G+H++ LK G V G D + + D+
Sbjct: 3 ALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDD---------DEFHLVDLR 53
Query: 162 DMALLKKLFDVVSFTHVMHLAAQ-AGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+M K + V HV HLAA G+ Y N +++N ++LE + +
Sbjct: 54 EMENCLKATEGVD--HVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVE-R 110
Query: 221 IVWASSSSVYG-----LNTKVPFSEKDRT-DQPASLYAATKKAGEEIAHTYNHIYGLSLT 274
++ASS+ VY T V E+D +P Y K A E + YN YG+
Sbjct: 111 FLFASSACVYPEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIETR 170
Query: 275 GLRFFTVYGPW-----GRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329
+RF +YGP GR + + FE G R FTYIDD V+G
Sbjct: 171 IVRFHNIYGPRGTWDGGREKAPAAMCRKVATAKDGDR-FEIWGDGLQTRSFTYIDDCVEG 229
Query: 330 C--LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR--NI 385
L D E NLG+ V +++L E +L K I
Sbjct: 230 LRRLMESDFGEP----------------VNLGSDEMVSMNELA---EMVLSFSGKPLEII 270
Query: 386 MKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
P V +++ +L + ELG++P T L+ GL+ W
Sbjct: 271 HHTPGPQGVRGRNSDNTLLKEELGWEPNTPLEEGLRITYFWI 312
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 90/349 (25%), Positives = 147/349 (42%), Gaps = 56/349 (16%)
Query: 102 VLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
++VTG AGF+G+++ AL RG +L +DN D L + + I I
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRD---------GHKFLNLADLVIA-DYI 50
Query: 161 NDMALLKKL--FDVVSFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCK 213
+ L +L + H A + Y M+N N LL+ C
Sbjct: 51 DKEDFLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMEN-------NYQYSKRLLDWC- 102
Query: 214 NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLS- 272
A ++ASS++ YG + + F E ++P ++Y +K ++ LS
Sbjct: 103 -AEKGIPFIYASSAATYG-DGEAGFREGRELERPLNVYGYSKFLFDQYVRRRVLPEALSA 160
Query: 273 -LTGLRFFTVYGPW----GR-PDMAYFFFTRDILNRKSIPIFESPDH---GTVARDFTYI 323
+ GLR+F VYGP G+ +A+ F + I ++ +F+S + G RDF Y+
Sbjct: 161 QVVGLRYFNVYGPREYHKGKMASVAFHLFNQ-IKAGGNVKLFKSSEGFKDGEQLRDFVYV 219
Query: 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR 383
D+V L L+ SG +FNLG +DL + + L K
Sbjct: 220 KDVVDVNLWLLENGV----SG----------IFNLGTGRARSFNDLADAVFKALGKDEKI 265
Query: 384 NIMKLP---RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
+ +P R FT A+I+ + Y P T L+ G+K +V+W L+
Sbjct: 266 EYIPMPEALRGRYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLLA 314
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 93/343 (27%), Positives = 155/343 (45%), Gaps = 31/343 (9%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ VLVTG +G++G+H L + G V+ LDN + S+ + L + F VEGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNS-KRSVLPVIERLGGKHPTF-VEGD 58
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
I + ALL ++ + V+H A V ++Q P Y +N+ G + L+ + AN +
Sbjct: 59 IRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTGLRF 278
++++SS++VYG K+P+ E T P S Y +K E+I S+ LR+
Sbjct: 118 NLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 279 FTVYG----------PWGRPDMAYFFFTRDILNRK-SIPIF----ESPDHGTVARDFTYI 323
F G P G P+ + + + R+ S+ IF + D GT RD+ ++
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED-GTGVRDYIHV 236
Query: 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR 383
D+ G +AA++ + + ++NLG V D+V+ + K
Sbjct: 237 MDLADGHVAAMEK----------LANKPGVHIYNLGAGVGSSVLDVVNAFSKACG-KPVN 285
Query: 384 NIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
R GD+P A+ S A REL ++ T L + W
Sbjct: 286 YHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
|
Length = 338 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 9e-26
Identities = 93/347 (26%), Positives = 153/347 (44%), Gaps = 67/347 (19%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG--IFIVEG 158
++LVTG AG++G+H L G V+ +DN ++ + +L++ ++ + +F +
Sbjct: 7 TILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFH-KV 65
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEV-----CK 213
D+ D L+K+F F V+H A V ++ P Y +N+ G ++LLEV CK
Sbjct: 66 DLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK 125
Query: 214 NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYG--- 270
+V++SS++VYG +VP +E+ + Y TK EEI I+
Sbjct: 126 K------LVFSSSATVYGQPEEVPCTEEFPL-SATNPYGRTKLFIEEIC---RDIHASDP 175
Query: 271 -LSLTGLRFFTVYG--PWGR----PDMAYFFFTRDILN-------------RKSIPIF-- 308
+ LR+F G P GR P + I N R + +F
Sbjct: 176 EWKIILLRYFNPVGAHPSGRIGEDP--------KGIPNNLMPYVQQVAVGRRPELTVFGN 227
Query: 309 --ESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPV 366
+ D GT RD+ ++ D+ G +AAL G +NLG V
Sbjct: 228 DYPTKD-GTGVRDYIHVMDLADGHIAALRKLFTDPDIG--------CEAYNLGTGKGTSV 278
Query: 367 SDLVSILERLLKVKAKRNIMKLP--RNGDVPFTHANISLAQRELGYK 411
++V+ E K K+ +KL R GD +A+ A++ELG+K
Sbjct: 279 LEMVAAFE---KASGKKIPLKLAPRRPGDAEEVYASTEKAEKELGWK 322
|
Length = 352 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 93/349 (26%), Positives = 146/349 (41%), Gaps = 54/349 (15%)
Query: 102 VLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGI--FIVEG 158
++VTG AGF+G+++ AL RG +L +DN ++ + L I +I +
Sbjct: 2 IIVTGGAGFIGSNLVKALNERGITDILVVDNLSN-------GEKFKNLVGLKIADYIDKD 54
Query: 159 DINDMALLKKLFDVVSFTHVMHLAA-----QAGVRYAMQNPNSYVHSNIAGLVSLLEVCK 213
D D + + H A + +Y M N N LL C
Sbjct: 55 DFKDWVRKGDENFKIEA--IFHQGACSDTTETDGKYMMDN-------NYQYTKELLHYC- 104
Query: 214 NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQ--PASLYAATKKAGEEIAHTYNHIYGL 271
+ ++ASS++VYG N + F+E T P ++Y +K ++ A +
Sbjct: 105 -LEKKIRFIYASSAAVYG-NGSLGFAEDIETPNLRPLNVYGYSKLLFDQWARRHGKEVLS 162
Query: 272 SLTGLRFFTVYGP--WGRPDMA--YFFFTRDILNRKSIPIFESPD---HGTVARDFTYID 324
+ GLR+F VYGP + + MA F I + + +F+S D G RDF Y+
Sbjct: 163 QVVGLRYFNVYGPREYHKGRMASVVFHLFNQIKAGEKVKLFKSSDGYADGEQLRDFVYVK 222
Query: 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN 384
D+VK L L+ G +FN+G +DL S + L + K
Sbjct: 223 DVVKVNLFFLEN--------PSVSG-----IFNVGTGRARSFNDLASATFKALGKEVKIE 269
Query: 385 IMKLP---RNGDVPFTHANISLAQRELGY-KPTTDLQTGLKKFVRWYLS 429
+ P R FT A+IS R GY K L+ G+K +V+ YL+
Sbjct: 270 YIDFPEDLRGKYQSFTEADIS-KLRAAGYTKEFHSLEEGVKDYVKNYLA 317
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 90/360 (25%), Positives = 142/360 (39%), Gaps = 52/360 (14%)
Query: 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLG--LDNFNDYYDPSLKKARQALLERSGIFI 155
G VLVTG GF G+ +S L+ G V+G LD + P+L A L+ I
Sbjct: 3 QGKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTN---PNL--FELANLDN-KISS 56
Query: 156 VEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA 215
GDI D+ L++ V HLAAQ VR + ++P +N+ G V+LLE +
Sbjct: 57 TRGDIRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGTVNLLEAIRET 116
Query: 216 NPQPAIVWASSSSVYGLNTKV-PFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY----- 269
A+V +S Y + E D Y+++K E I +Y + +
Sbjct: 117 GSVKAVVNVTSDKCYENKEWGWGYREND-PLGGHDPYSSSKGCAELIISSYRNSFFNPEN 175
Query: 270 ----GLSLTGLRFFTVYG----PWGR--PDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319
G+++ R V G R PD R + + I +P R
Sbjct: 176 YGKHGIAIASARAGNVIGGGDWAEDRIVPDC-----IRAFEAGERVII-RNP---NAIRP 226
Query: 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP--VPVSDLVSILERLL 377
+ ++ + + G L AEK G++ A +N G V V +LV + R
Sbjct: 227 WQHVLEPLSGYLL---LAEK-LYERGEEYAEA----WNFGPDDEDAVTVLELVEAMARYW 278
Query: 378 KVKAKRNIMKLPRNGDVP--FTHAN--ISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433
A+ + P S A+ LG++P +L+ L+ V WY + +G
Sbjct: 279 GEDARWD----LDGNSHPHEANLLKLDCSKAKTMLGWRPRWNLEETLEFTVAWYKEWLSG 334
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 5e-21
Identities = 81/334 (24%), Positives = 138/334 (41%), Gaps = 43/334 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
VL+TG AG +G+H+ L RG V+ +DNF R+ L + + +VEG I
Sbjct: 3 VLITGGAGQIGSHLIEHLLERGHQVVVIDNFA-------TGRREHLPDHPNLTVVEGSIA 55
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVH---SNIAGLVSLLEVCKNANPQ 218
D AL+ KLF V+H AA A ++P+ + +N+ G ++++ K A +
Sbjct: 56 DKALVDKLFGDFKPDAVVHTAA------AYKDPDDWYEDTLTNVVGGANVVQAAKKAGVK 109
Query: 219 PAIVWASSSSVYGLN-TKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 277
+++ ++ YGL + P P S YA +K AGE Y + G+ R
Sbjct: 110 -RLIYFQTALCYGLKPMQQPIRLDHPRAPPGSSYAISKTAGEY----YLELSGVDFVTFR 164
Query: 278 FFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337
V GP F+ R +K F + RDF ++ D+ + ALD
Sbjct: 165 LANVTGPRNVIGPLPTFYQRLKAGKKC---FVT----DTRRDFVFVKDLARVVDKALD-- 215
Query: 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNG-DVPF 396
G + G ++ + V + +L + L + + + + DVP
Sbjct: 216 ------GIRGHG-----AYHFSSGEDVSIKELFDAVVEALDLPLRPEVEVVELGPDDVPS 264
Query: 397 THANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430
+ S ++ G+K T L + + WY +
Sbjct: 265 ILLDPSRTFQDFGWKEFTPLSETVSAALAWYDKH 298
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 2e-18
Identities = 91/348 (26%), Positives = 154/348 (44%), Gaps = 38/348 (10%)
Query: 102 VLVTGAAGFVGTHVSA-ALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEG-D 159
+L+TG AGF+G+ + + D V+ +D Y + A A ER F E D
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLT-YAGNLMSLAPVAQSER---FAFEKVD 59
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCK------ 213
I D A L ++F VMHLAA++ V ++ P +++ +NI G +LLE +
Sbjct: 60 ICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNAL 119
Query: 214 NANPQPAIVW--ASSSSVYG-LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYG 270
+ + A + S+ VYG L++ F + P+S Y+A+K + + + + YG
Sbjct: 120 TEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 271 LSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG- 329
L YGP+ P+ + L K +P++ +G RD+ Y++D +
Sbjct: 180 LPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVY---GNGQQIRDWLYVEDHARAL 236
Query: 330 -CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK-----R 383
C+A ++ GG R L V V + +LE L K + R
Sbjct: 237 YCVATTGKVGETYNIGGHNE-RKNLDV----------VETICELLEELAPNKPQGVAHYR 285
Query: 384 NIMKL--PRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
+++ R G + S RELG+ P ++G++K V+WYL+
Sbjct: 286 DLITFVADRPGHDLRYAIDASKIARELGWLPQETFESGMRKTVQWYLA 333
|
Length = 355 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 6e-18
Identities = 77/361 (21%), Positives = 122/361 (33%), Gaps = 64/361 (17%)
Query: 101 SVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
SVLVTG +GF G + L R G V D P + I ++GD
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFD-----IAPPGEALSAWQHP--NIEFLKGD 53
Query: 160 INDM-ALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
I D + + L V H AA + Y N+ G ++L+ C+ Q
Sbjct: 54 ITDRNDVEQALSGA---DCVFHTAAIVP---LAGPRDLYWEVNVGGTQNVLDACQRCGVQ 107
Query: 219 PAIVWASSSSVYGLNTKVPFSEKD---RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTG 275
V+ SSSSV + + + + +YA TK E I N L
Sbjct: 108 -KFVYTSSSSVIF-GGQNIHNGDETLPYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCA 165
Query: 276 LRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR-DFTYIDDIVKGCLAAL 334
LR ++GP G + F +F + DFTY+ ++ A
Sbjct: 166 LRPAGIFGP-GDQGLVPILF-EWAEKGLVKFVFGRGN----NLVDFTYVHNLAH----AH 215
Query: 335 DTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSI-LERLLKVKAKRNIMKLP---- 389
A + G G+ + + + P + +L+ + L + + P
Sbjct: 216 ILAAAALVKGKTISGQT----YFITDAEPHNMFELLRPVWKALGFGSRPKIRLSGPLAYC 271
Query: 390 -----------------------RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
R P +I+ AQ++LGY P + GL + + W
Sbjct: 272 AALLSELVSFMLGPYFVFSPFYVRALVTPMYF-SIAKAQKDLGYAPRYSNEEGLIETLNW 330
Query: 427 Y 427
Y
Sbjct: 331 Y 331
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 77/364 (21%), Positives = 132/364 (36%), Gaps = 64/364 (17%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGL---------DNFNDYYDPSLKKARQALLERS 151
L+TG G G++++ L +G V G+ + Y DP L R
Sbjct: 4 VALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPR------- 56
Query: 152 GIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEV 211
+ + GD+ D + L ++ + V + +LAAQ+ V + + P + G + LLE
Sbjct: 57 -LHLHYGDLTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEA 115
Query: 212 CKNANPQPA-IVWASSSSVYGLNTKVPFSEKDRTD-QPASLYAATKKAGEEIAHTYNHIY 269
+ + AS+S +YGL ++P E T P S YA K I Y Y
Sbjct: 116 IRILGEKKTRFYQASTSELYGLVQEIPQKET--TPFYPRSPYAVAKLYAYWITVNYRESY 173
Query: 270 GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH---GTV--ARDFTYID 324
GL F P R + F TR I + D G + RD+ +
Sbjct: 174 GLFACNGILFNHESP-LRGET---FVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAK 229
Query: 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSIL----------- 373
D V+ L E + + V + V +
Sbjct: 230 DYVEAMWLMLQQEEP--------------DDYVIATGETHSVREFVELAFEMVGIDLEWE 275
Query: 374 -----ERLLKVKAKRNIMKLP----RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFV 424
E+ + K + I+++ R +V + + A+ +LG++P L+ +++ V
Sbjct: 276 GTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLLGDPTKAKEKLGWRPEVSLEELVREMV 335
Query: 425 RWYL 428
L
Sbjct: 336 EADL 339
|
Length = 345 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-17
Identities = 74/341 (21%), Positives = 127/341 (37%), Gaps = 56/341 (16%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTG G VG+ + L RRG + S E D+
Sbjct: 2 ILVTGHRGLVGSAIVRVLARRGY-------------------ENVVFRTS----KELDLT 38
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYA-MQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D ++ F+ +V+HLAA+ G A M P ++ N+ +++ +
Sbjct: 39 DQEAVRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVK-K 97
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQP--ASL--YAATKKAGEEIAHTYNHIYGLSLTGL 276
+V+ SS +Y P E D P + YA K+AG ++ Y YG +
Sbjct: 98 LVFLGSSCIYPDLAPQPIDESDLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQYGCDYISV 157
Query: 277 RFFTVYGPWGR---------PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327
+YGP P + F + K + ++ S GT R+F Y DD+
Sbjct: 158 MPTNLYGPHDNFDPENSHVIPALIRKFHEAKLRGGKEVTVWGS---GTPRREFLYSDDLA 214
Query: 328 KGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK 387
+ + L+ ++ + N+G+ + + +L + + V K I+
Sbjct: 215 RAIVFLLENYDEPI-------------IVNVGSGVEISIRELAEAIAEV--VGFKGEIVF 259
Query: 388 LPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYL 428
D R LG+ P T L+ G+++ WYL
Sbjct: 260 DTSKPDGQPRKLLDVSKLRALGWFPFTPLEQGIRETYEWYL 300
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 1e-16
Identities = 97/402 (24%), Positives = 162/402 (40%), Gaps = 55/402 (13%)
Query: 45 FIFLAVIL--IFFFRSPSSNPLPSADPSRRSLRTYDWG----------GPAFEKRVRSSA 92
FI + +++ FF PS + L A+ + R+ + R+
Sbjct: 52 FILVGILIGSTFFILQPSLSRLGPAESTSLITRSVSIAVTDSPPSSSTFNSSGGGGRT-G 110
Query: 93 RVRA---RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE 149
RV R + ++VTG AGFVG+H+ L RGD V+ +DNF K+ L
Sbjct: 111 RVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFT----GRKENLVHLFG 166
Query: 150 RSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLL 209
++ D+ + LL+ + HLA A + NP + +N+ G +++L
Sbjct: 167 NPRFELIRHDVVEPILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML 219
Query: 210 EVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD-QPA---SLYAATKKAGEEIAHTY 265
+ K + + S+S VYG + P E + P S Y K+ E +A Y
Sbjct: 220 GLAKRVGAR--FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDY 277
Query: 266 NHIYGLSLTGLRFFTVYGPWGRPDMAYFF--FTRDILNRKSIPIFESPDHGTVARDFTYI 323
+ G+ + R F YGP D F + ++ + ++ G R F Y+
Sbjct: 278 HRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGD---GKQTRSFQYV 334
Query: 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR 383
D+V G +A ++ G+ G FNLGN + +L +++ + A
Sbjct: 335 SDLVDGLVALME---------GEHVGP-----FNLGNPGEFTMLELAEVVKETIDSSA-- 378
Query: 384 NIMKLPRNGDVPFTHA-NISLAQRELGYKPTTDLQTGLKKFV 424
I P D P +IS A+ L ++P L+ GL V
Sbjct: 379 TIEFKPNTADDPHKRKPDISKAKELLNWEPKISLREGLPLMV 420
|
Length = 436 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 82/360 (22%), Positives = 124/360 (34%), Gaps = 76/360 (21%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTGA GF+G+++ AL +G V L + LL+ + +VEGD+
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRAL---------VRSGSDAVLLDGLPVEVVEGDLT 51
Query: 162 DMALLKKLF---DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
D A L D V HLAA ++ +N+ G ++L+ A +
Sbjct: 52 DAASLAAAMKGCDR-----VFHLAAF--TSLWAKDRKELYRTNVEGTRNVLDAALEAGVR 104
Query: 219 PAIVWASSSSVYGLNTKVPFSEKD--RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGL 276
+V SS + G E + Y +K E GL + +
Sbjct: 105 -RVVHTSSIAALGGPPDGRIDETTPWNERPFPNDYYRSKLLAELEVLEAAA-EGLDVVIV 162
Query: 277 RFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336
V+GP + D LN K +P + P GT F + D+ +G +AA+
Sbjct: 163 NPSAVFGPGDEGPTSTGLDVLDYLNGK-LPAY--PPGGT---SFVDVRDVAEGHIAAM-- 214
Query: 337 AEKSTGSGGKKRGRAQLRVFNLG-NTSPVPVSDLVSILERLLKVKAKRNIMKLPR----- 390
++GR R G N S L L + VK R +P
Sbjct: 215 ----------EKGRRGERYILGGENLS---FKQLFETLAEITGVKPPR--RTIPPWLLKA 259
Query: 391 -----------NGDVPFTHANI------------SLAQRELGYKPTTDLQTGLKKFVRWY 427
G P A+RELGY P L+ L+ + W
Sbjct: 260 VAALSELKARLTGKPPLLTPRTARVLRRNYLYSSDKARRELGYSPRP-LEEALRDTLAWL 318
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 5e-16
Identities = 91/341 (26%), Positives = 141/341 (41%), Gaps = 41/341 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDG--VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+L+TGAAGF+ +HV+ L R ++ LD + Y +LK + + F V+GD
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLD--YCSNLKNLNPSKSSPNFKF-VKGD 65
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
I L+ L +MH AAQ V + N + +NI G LLE CK
Sbjct: 66 IASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASL------YAATKKAGEEIAHTYNHIYGLSL 273
+ S+ VYG + D + AS Y+ATK E + Y YGL +
Sbjct: 126 RFIHVSTDEVYGETD----EDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 181
Query: 274 TGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH--GTVARDFTYIDDIVKGCL 331
R VYGP P+ F + K +PI H G+ R + Y +D+ +
Sbjct: 182 ITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPI-----HGDGSNVRSYLYCEDVAE--- 233
Query: 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN 391
A + G V+N+G V D+ + +L + +++I +
Sbjct: 234 -AFEVVLHKGEVGH---------VYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVE-- 281
Query: 392 GDVPFTHANISLAQ---RELGYKPTTDLQTGLKKFVRWYLS 429
+ PF L ++LG++ T + GLKK + WY S
Sbjct: 282 -NRPFNDQRYFLDDQKLKKLGWQERTSWEEGLKKTMEWYTS 321
|
Length = 668 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 6e-16
Identities = 86/346 (24%), Positives = 146/346 (42%), Gaps = 50/346 (14%)
Query: 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLD-NFNDYYDPSLKKARQALLERSGIF 154
+ + +TGA GF+ +H++ LK G ++ D N++ + F
Sbjct: 18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDM-------------F 64
Query: 155 IVEGDINDMALLKKLFDVVS-FTHVMHLAAQ-AGVRYAMQNPNSYVHSNIAGLVSLLEVC 212
E + D+ +++ V HV +LAA G+ + N + +++N ++LE
Sbjct: 65 CHEFHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAA 124
Query: 213 KNANPQPAIVWASSSSVYG----LNTKVPFSEKDR-TDQPASLYAATKKAGEEIAHTYNH 267
+ N +ASS+ +Y L T V E D +P Y K A EE+ Y
Sbjct: 125 R-INGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTK 183
Query: 268 IYGLSLTGLRFFTVYGP---W--GRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322
+G+ RF +YGP W GR + A F R L S FE G R FT+
Sbjct: 184 DFGIECRIGRFHNIYGPFGTWKGGR-EKAPAAFCRKALT--STDEFEMWGDGKQTRSFTF 240
Query: 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRV-FNLGNTSPVPVSDLVSILERLLKVKA 381
ID+ V+G L + ++ R N+G+ V ++++ I L +
Sbjct: 241 IDECVEGVL---------------RLTKSDFREPVNIGSDEMVSMNEMAEI---ALSFEN 282
Query: 382 KR-NIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
K+ I +P V +++ +L + +LG+ PT L+ GL+ W
Sbjct: 283 KKLPIKHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFW 328
|
Length = 370 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 6e-15
Identities = 91/356 (25%), Positives = 157/356 (44%), Gaps = 50/356 (14%)
Query: 102 VLVTGAAGFVGTH-VSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEG-D 159
+LVTG AGF+G+ V + D V+ +D Y +L+ A + S ++ E D
Sbjct: 3 ILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLT--YAGNLESL--ADVSDSERYVFEHAD 58
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCK------ 213
I D A L ++F VMHLAA++ V ++ P +++ +NI G LLE +
Sbjct: 59 ICDRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSAL 118
Query: 214 NANPQPAIVW--ASSSSVYG---------LNTKVPFSEKDRTDQPASLYAATKKAGEEIA 262
+ + + A + S+ VYG + ++P + P+S Y+A+K + + +
Sbjct: 119 DEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHLV 178
Query: 263 HTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322
+ YGL YGP+ P+ + L K +PI+ D RD+ Y
Sbjct: 179 RAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQ---IRDWLY 235
Query: 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLV----SILERLLK 378
++D + AL + G G+ +N+G + D+V +L+ ++
Sbjct: 236 VEDHAR----ALYKV-VTEGKAGE--------TYNIGGHNEKKNLDVVLTICDLLDEIVP 282
Query: 379 VKAKRNIMKLPRNGDVPFTH-----ANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
KA ++ D P H + S RELG+KP ++G++K V WYL+
Sbjct: 283 -KATSYREQITYVADRP-GHDRRYAIDASKISRELGWKPQETFESGIRKTVEWYLA 336
|
Length = 352 |
| >gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 66/296 (22%), Positives = 100/296 (33%), Gaps = 69/296 (23%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ +L+TGA GF+G ++ A LK + D D F + + L IF
Sbjct: 1 MKILITGAKGFIGKNLIARLKEQKDD----DIFFYDRESDESELDDFLQGADFIF----- 51
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
HLA GV ++ + N+ LL+ +P
Sbjct: 52 --------------------HLA---GVNRP-KDEAEFESGNVGLTERLLDALTRNGKKP 87
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
I+ +SS D P Y +K A EE+ Y G + R
Sbjct: 88 PILLSSSIQAAL-------------DNP---YGKSKLAAEELLQEYARETGAPVYIYRLP 131
Query: 280 TVYGPWGRPDM--AYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337
V+G W RP+ A F +I I I P YIDD+V + L+ A
Sbjct: 132 NVFGKWCRPNYNSAVATFCYNIARDLPIQI-NDPAAELT---LVYIDDVVDELIQLLEGA 187
Query: 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGD 393
+G + + V V ++ +L K K R+ + LP G
Sbjct: 188 PTYSGGFDQ-----------VLPVYKVTVGEIAELLY---KFKESRDTLILPNVGT 229
|
This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 82/365 (22%), Positives = 136/365 (37%), Gaps = 68/365 (18%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN-DYYDPSLKKARQALLERSG-IFIVEG 158
S LV G +GF+G H+ L RRG N +D ++ + SG + G
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRG-------NPTVHVFD--IRPTFELDPSSSGRVQFHTG 51
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
D+ D L+K F+ V H A+ N + Y N+ G +++E C+ +
Sbjct: 52 DLTDPQDLEKAFNEKGPNVVFHTASPD----HGSNDDLYYKVNVQGTRNVIEACRKCGVK 107
Query: 219 PAIVWASSSSVYGLNTKVPFSEKDRT----DQPASLYAATKKAGEE-IAHTYNHIYGLSL 273
+V+ SS+SV + D + D+ Y TK E+ + + GL
Sbjct: 108 -KLVYTSSASV--VFNGQDIINGDESLPYPDKHQDAYNETKALAEKLVLKANDPESGLLT 164
Query: 274 TGLRFFTVYGPWGRPDMAYFFFTRDIL-NRKSIPIFESPDHGTVARDFTYIDDIVKG-CL 331
LR ++GP G + N K+ G DFTY++++ L
Sbjct: 165 CALRPAGIFGP-GDRQLVPGL--LKAAKNGKTKFQIGD---GNNLFDFTYVENVAHAHIL 218
Query: 332 AA--LDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSIL------ERLLKVKAKR 383
AA L ++ + G+ F + N P+ D + ER +K R
Sbjct: 219 AADALLSSSHAETVAGE--------AFFITNDEPIYFWDFARAIWEGLGYERPPSIKLPR 270
Query: 384 NIMKL-------------PRNGDVPFTHA--------NISLAQRELGYKPTTDLQTGLKK 422
+ PF A NI A++ LGY P L+ G+++
Sbjct: 271 PVALYLASLLEWTCKVLGKEPTFTPFRVALLCSTRYFNIEKAKKRLGYTPVVTLEEGIER 330
Query: 423 FVRWY 427
++W+
Sbjct: 331 TLQWF 335
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 87/359 (24%), Positives = 149/359 (41%), Gaps = 57/359 (15%)
Query: 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF---------NDYYDPSLKKARQAL 147
R G+ V+VTG AGFVG+H+ L RGD V+ +DNF + + +P+ + R +
Sbjct: 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDV 176
Query: 148 LERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVS 207
+E ++E D + HLA A + NP + +N+ G ++
Sbjct: 177 VEP---ILLEVD-----------------QIYHLACPASPVHYKFNPVKTIKTNVVGTLN 216
Query: 208 LLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD-QPA---SLYAATKKAGEEIAH 263
+L + K + + S+S VYG + P E + P S Y K+ E +
Sbjct: 217 MLGLAKRVGAR--FLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTM 274
Query: 264 TYNHIYGLSLTGLRFFTVYGPWGRPDMAYFF--FTRDILNRKSIPIFESPDHGTVARDFT 321
Y+ + + R F YGP D F L ++ + ++ G R F
Sbjct: 275 DYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD---GKQTRSFQ 331
Query: 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ D+V+G + ++ G+ G FNLGN + +L +++ + A
Sbjct: 332 FVSDLVEGLMRLME---------GEHVGP-----FNLGNPGEFTMLELAKVVQETIDPNA 377
Query: 382 KRNIMKLPRNGDVPFTHA-NISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGGKKAAG 439
K I P D P +I+ A+ LG++P L+ GL V+ + G +K
Sbjct: 378 K--IEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDFRQRVFGDQKEGS 434
|
Length = 442 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 53/199 (26%), Positives = 80/199 (40%), Gaps = 23/199 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKR--RGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+LVTGAAG +G ++ L R GV GLD R+ + V D
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPRVIGVDGLD------------RRRPPGSPPKVEYVRLD 48
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
I D A +F V+HLA + ++ N+ G ++L+ C A P
Sbjct: 49 IRDPA-AADVFREREADAVVHLAF---ILDPPRDGAERHRINVDGTQNVLDACAAA-GVP 103
Query: 220 AIVWASSSSVYG--LNTKVPFSEKDRTD-QPASLYAATKKAGEEIAHTYNHIY-GLSLTG 275
+V SS +VYG + P +E P Y+ K E++ + + L++T
Sbjct: 104 RVVVTSSVAVYGAHPDNPAPLTEDAPLRGSPEFAYSRDKAEVEQLLAEFRRRHPELNVTV 163
Query: 276 LRFFTVYGPWGRPDMAYFF 294
LR T+ GP R F
Sbjct: 164 LRPATILGPGTRNTTRDFL 182
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 87/361 (24%), Positives = 135/361 (37%), Gaps = 52/361 (14%)
Query: 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLG--LDNFNDYYDPSLKKARQALLERSGIFI 155
G VLVTG GF G+ +S L G V G LD P+L + + F
Sbjct: 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTS---PNLFELLNLAKKIEDHF- 58
Query: 156 VEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA 215
GDI D A L+K V HLAAQ VR + +P +N+ G V+LLE +
Sbjct: 59 --GDIRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAI 116
Query: 216 NPQPAIVWASSSSVYGLNTKV-PFSEKDRTD--QPASLYAATKKAGEEIAHTYNHIY--G 270
A+V +S Y + V + E D P Y+++K E + +Y +
Sbjct: 117 GSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDP---YSSSKACAELVIASYRSSFFGV 173
Query: 271 LSLTGLRFFTVY-------GPWGR----PDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319
+ G++ + G W PD+ R + K + I +PD R
Sbjct: 174 ANFHGIKIASARAGNVIGGGDWAEDRLIPDV-----IRAFSSNKIVII-RNPD---ATRP 224
Query: 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLG--NTSPV-PVSDLVSILERL 376
+ ++ + + G L AEK + G +N G + V +V LE
Sbjct: 225 WQHVLEPLSGYLL---LAEKLFTGQAEFAG-----AWNFGPRASDNARVVELVVDALEFW 276
Query: 377 LKVKAKRNIMKLPRNGD---VPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433
A+ + S A+ LG+ P L+ + + V WY ++ G
Sbjct: 277 WGDDAE--WEDDSDLNHPHEARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWYKAWLRG 334
Query: 434 G 434
Sbjct: 335 E 335
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 58/204 (28%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEG 158
VL+TGA+GFVG ++ L + ++ +D + + Q + G
Sbjct: 2 KVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPSGAPRVTQ----------IAG 51
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
D+ AL++ L + V HLAA A + + N+ G +LLE + P+
Sbjct: 52 DLAVPALIEALANGRPDV-VFHLAAIVS-GGAEADFDLGYRVNVDGTRNLLEALRKNGPK 109
Query: 219 PAIVWASSSSVYGLNTKVPFSEKDRTD-QPASLYAATKKAGEE-IAHTYNHIYGLSLTGL 276
P V+ SS +VYGL +P D T PAS Y A K E + + T L
Sbjct: 110 PRFVFTSSLAVYGLP--LPNPVTDHTALDPASSYGAQKAMCELLLNDYSRRGFVDGRT-L 166
Query: 277 RFFTVYGPWGRPDMAYFFFTRDIL 300
R TV GRP+ A F I+
Sbjct: 167 RLPTVCVRPGRPNKAASAFASTII 190
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 9/183 (4%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGL----DNFNDYYDPSLKKARQALLERSGIFIVEG 158
L+TG G G++++ L +G V GL +FN + + + + + + G
Sbjct: 4 LITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKAR-MKLHYG 62
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
D+ D + L+++ D + T + +LAAQ+ V+ + + P + G + LLE +
Sbjct: 63 DLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLI 122
Query: 219 PAIVW--ASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGL-SLTG 275
++ + AS+S +YG ++P +E P S YAA K I Y YGL ++ G
Sbjct: 123 KSVKFYQASTSELYGKVQEIPQNETTPF-YPRSPYAAAKLYAHWITVNYREAYGLFAVNG 181
Query: 276 LRF 278
+ F
Sbjct: 182 ILF 184
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 74/303 (24%), Positives = 108/303 (35%), Gaps = 61/303 (20%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDN-FNDYYD-----------PSLKKARQALLE 149
VL+ G G+ G + L +RG V +DN D S+ + +A E
Sbjct: 3 VLILGGDGYCGWPTALHLSKRGHEVCIVDNLVRRRIDVELGLESLTPIASIHERLRAWKE 62
Query: 150 RSG--IFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAM---QNPNSYVHSNIAG 204
+G I GD D L +L V+H A Q Y+M ++ N H+N+ G
Sbjct: 63 LTGKTIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMIDREHANYTQHNNVIG 122
Query: 205 LVSLLEVCKNANPQPAIVWASSSSVYGL-NTKVP---FSEKD--RTD------QPASLYA 252
++LL K +P +V + YG N +P + + R D Q S Y
Sbjct: 123 TLNLLFAIKEFDPDCHLVKLGTMGEYGTPNIDIPEGYITIEHNGRRDTLPYPKQAGSWYH 182
Query: 253 ATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWG-----------RPDMAYFFFTRDILN 301
+K +G+ +T L VYG R D F T +LN
Sbjct: 183 LSKVHDSHNIMFACKAWGIRITDLNQGVVYGTKTEETEADERLINRFDYDGVFGT--VLN 240
Query: 302 RKSIPIFESPDH-------GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLR 354
R + + H G R F I D V+ AL+ K+ R
Sbjct: 241 RFCVQ--AAIGHPLTVYGKGGQTRGFISIRDTVQCLELALENPAKAGE----------YR 288
Query: 355 VFN 357
VFN
Sbjct: 289 VFN 291
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 60/316 (18%), Positives = 105/316 (33%), Gaps = 62/316 (19%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+TGA G +G + LK RG V+G + L D+
Sbjct: 2 ILITGATGMLGRALVRLLKERGYEVIGTG-RSRASLFKL------------------DLT 42
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D +++ +++ AA V +P N+ +L K + +
Sbjct: 43 DPDAVEEAIRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAPENLARAAKEVGAR--L 100
Query: 222 VWASSSSVY-GLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+ S+ V+ G K P+ E+D + P ++Y +K GE N Y L LR
Sbjct: 101 IHISTDYVFDG--KKGPYKEEDAPN-PLNVYGKSKLLGEVAVLNANPRY---LI-LRTSW 153
Query: 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFE----SPDHGTVARDFTYIDDIVKGCLAALDT 336
+YG + + R RK + + SP TY D+ L ++
Sbjct: 154 LYGELKNGENFVEWMLRLAAERKEVNVVHDQIGSP---------TYAADLADAILELIER 204
Query: 337 AEKS-----TGSGGKKR---GRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR----- 383
+ + SG + + L P ++ I + A+R
Sbjct: 205 NSLTGIYHLSNSGPISKYEFAKLIADALGL------PDVEIKPITSSEYPLPARRPANSS 258
Query: 384 -NIMKLPRNGDVPFTH 398
+ KL G +
Sbjct: 259 LDCSKLEELGGIKPPD 274
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 6e-10
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 26/184 (14%)
Query: 102 VLVTGAAGFVGTHVSAALKRR--GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+L+TG G +G+ ++ L++R D V+ D K +L SG F D
Sbjct: 2 ILITGGLGQIGSELAKLLRKRYGKDNVIASD--------IRKPPAHVVL--SGPFEYL-D 50
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
+ D L+++ T ++HLAA +NP N+ GL ++LE+ + N +
Sbjct: 51 VLDFKSLEEIVVNHKITWIIHLAALLSAV-GEKNPPLAWDVNMNGLHNVLELAREHNLR- 108
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQ-----PASLYAATKKAGEEIAHTYNHIYGLSLT 274
I S+ +G P + ++ T P ++Y +K A E + Y+H +G+
Sbjct: 109 -IFVPSTIGAFG-----PTTPRNNTPDDTIQRPRTIYGVSKVAAELLGEYYHHKFGVDFR 162
Query: 275 GLRF 278
LR+
Sbjct: 163 SLRY 166
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 24/165 (14%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+ GA GF+G ++ L +G V L N + A+ VEGD+
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVR-NTKRLSKEDQEPVAV--------VEGDLR 51
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D+ L V V+HLA A ++ + ++ G ++LE K
Sbjct: 52 DLDSLSDAVQGVD--VVIHLAG------APRDTRDFCEVDVEGTRNVLEAAK-EAGVKHF 102
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYN 266
++ SS YG E + P+S Y A K E + +
Sbjct: 103 IFISSLGAYG----DLHEETE--PSPSSPYLAVKAKTEAVLREAS 141
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 9/166 (5%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
LVTG GF+G H+ L R + + + + + P L + + ++ + +EGDI
Sbjct: 1 VCLVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTDIEGDI 60
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D++ L + VS V+H AA V N N+ G ++LE C N
Sbjct: 61 KDLSFLFRACQGVSV--VIHTAAIVDVFG-PPNYEELEEVNVNGTQAVLEACVQNN-VKR 116
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQP-----ASLYAATKKAGEEI 261
+V+ SS V G N K D P YA++K E I
Sbjct: 117 LVYTSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPPYASSKLLAENI 162
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 75/344 (21%), Positives = 116/344 (33%), Gaps = 64/344 (18%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VLVTGA GF+G + L RG + + + + DI
Sbjct: 1 KVLVTGANGFIGRALVDKLLSRG-----------EEVRIAVRNAENAEPSVVLAEL-PDI 48
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGV-RYAMQNPNS-YVHSNIAGLVSLLEVCKNANPQ 218
+ L D V+HLAA+ V +P S Y N L +
Sbjct: 49 DSFTDLFLGVDA-----VVHLAARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQGVK 103
Query: 219 PAIVWASSSSVYGLNTK-VPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 277
V+ SS V G T PF E D P Y +K E G+ + LR
Sbjct: 104 -RFVFLSSVKVNGEGTVGAPFDETDPPA-PQDAYGRSKLEAERALLELGASDGMEVVILR 161
Query: 278 FFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337
VYGP R + A L + +P+ R +D++V +
Sbjct: 162 PPMVYGPGVRGNFA----RLMRLIDRGLPLPPGAVKNR--RSLVSLDNLVDAIYLCISLP 215
Query: 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLL------------------KV 379
+ + G F + + PV ++LV + R L K+
Sbjct: 216 KAANG------------TFLVSDGPPVSTAELVDEIRRALGKPTRLLPVPAGLLRFAAKL 263
Query: 380 KAKRNIM-KLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKK 422
KR ++ +L + + Q ELG++P L+ GL++
Sbjct: 264 LGKRAVIQRLFGSLQY-----DPEKTQNELGWRPPISLEEGLQE 302
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 64/300 (21%), Positives = 100/300 (33%), Gaps = 78/300 (26%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
+L+ G F+G + L G V FN + + L E + GD
Sbjct: 2 KILIIGGTRFIGKALVEELLAAGHDV---TVFNR------GRTKPDLPEGVEHIV--GDR 50
Query: 161 NDMALLKKL-----FDVV----SFT--HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLL 209
ND L++L FDVV ++T V L
Sbjct: 51 NDRDALEELLGGEDFDVVVDTIAYTPRQVE---------------------------RAL 83
Query: 210 EVCKNANPQPAIVWASSSSVYGLNTKV-----PFSEKD--RTDQPASLYAATKKAGEEIA 262
+ K Q ++ SS+SVY +V P E D P Y K+A E++
Sbjct: 84 DAFKGRVKQ--YIFISSASVYLKPGRVITESTPLREPDAVGLSDPWD-YGRGKRAAEDVL 140
Query: 263 HTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322
T +R +YGP +FF R + + I + P G F +
Sbjct: 141 IEA---AAFPYTIVRPPYIYGPGDYTGRLAYFFDR-LARGRPILV---PGDGHSLVQFIH 193
Query: 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK 382
+ D+ + L A A GG +FN+ V +L+ + L +A+
Sbjct: 194 VKDLARALLGA---AGNPKAIGG---------IFNITGDEAVTWDELLEACAKALGKEAE 241
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 9e-09
Identities = 63/312 (20%), Positives = 103/312 (33%), Gaps = 59/312 (18%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIF----IVE 157
V VTG GF+G H+ L G VL L SL +A + + E ++E
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVR-----SESLGEAHERIEEAGLEADRVRVLE 55
Query: 158 GDIN----DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPN--SYVHSNIAGLVSLLEV 211
GD+ ++ HV+H AA Y Q PN ++ NI G +LE+
Sbjct: 56 GDLTQPNLGLSAAASRELAGKVDHVIHCAAS----YDFQAPNEDAWRT-NIDGTEHVLEL 110
Query: 212 CKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP-ASLYAATKKAGEEIAHTY----- 265
+ Q S++ V G + Q + Y +K E++
Sbjct: 111 AARLDIQRFHY-VSTAYVAGNREGNIRETELNPGQNFKNPYEQSKAEAEQLVRAAATQIP 169
Query: 266 ------NHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319
+ + G S TG R + G Y + +P+ P + +
Sbjct: 170 LTVYRPSIVVGDSKTG-RIEKIDGL-------YELLNLLAKLGRWLPM---PGNKGARLN 218
Query: 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKV 379
+D + + E A ++F+L T P P L I +
Sbjct: 219 LVPVDYVADAIVYLSKKPE------------ANGQIFHL--TDPTP-QTLREIADLFKSA 263
Query: 380 KAKRNIMKLPRN 391
++ L N
Sbjct: 264 FLSPGLLVLLMN 275
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 60/295 (20%), Positives = 105/295 (35%), Gaps = 55/295 (18%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDG---VLGLDNFNDYYDPSLKK--ARQALLERSGIFI 155
++LVTG AG +G+ + + + G V D + L + + ++ I
Sbjct: 4 TILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLH---ELVRELRSRFPHDKLRFII 60
Query: 156 VEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA 215
GD+ D L++ F V H AA V NP + +N+ G ++++
Sbjct: 61 --GDVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIEN 118
Query: 216 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEI---AHTYNHIYGLS 272
+ + ++ +V P ++ ATK+ E++ + Y+
Sbjct: 119 GVEKFVCISTDKAVN----------------PVNVMGATKRVAEKLLLAKNEYSS--STK 160
Query: 273 LTGLRFFTVYGPWGR--PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330
+ +RF V G G P F + I + + + R F I + V
Sbjct: 161 FSTVRFGNVLGSRGSVLP-----LFKKQIKKGGPLTVT----DPDMTRFFMTIPEAVDLV 211
Query: 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNI 385
L A G GG +F L PV + DL L LL + +I
Sbjct: 212 LQAC-----ILGDGGG--------IFLLDMGPPVKILDLAEALIELLGYEPYEDI 253
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 70/348 (20%), Positives = 125/348 (35%), Gaps = 56/348 (16%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND 162
V G G VG +A+ R+ + LG N L E D+
Sbjct: 1 FVAGHRGLVG----SAIVRKLEA-LGFTNL-------------VLRTHK-----ELDLTR 37
Query: 163 MALLKKLFDVVSFTHVMHLAAQAGVRYA-MQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
A ++ F T+V+ AA+ G +A M P ++ N+ ++++ + +
Sbjct: 38 QADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KL 96
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASL----YAATKKAGEEIAHTYNHIYGLSLTGLR 277
++ SS +Y P E P YA K AG ++ Y YG
Sbjct: 97 LFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGM 156
Query: 278 FFTVYGPWGR---------PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVK 328
+YGP P + F + ++ S G+ R+F ++DD+
Sbjct: 157 PTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGS---GSPLREFLHVDDLAD 213
Query: 329 GCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL 388
+ + SG N+G+ V + +L +++ ++ + +
Sbjct: 214 AVVFLMRRY-----SG--------AEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTS 260
Query: 389 PRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGGKK 436
+G + L R LG+ P L+ GL++ +WYL Y G K
Sbjct: 261 KPDGTPRKLMDSSKL--RSLGWDPKFSLKDGLQETYKWYLENYETGGK 306
|
Length = 306 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGL----DNFND------YYDPSLKKARQALLERSG 152
L+TG G G++++ L +G V G+ NFN Y DP KAR
Sbjct: 10 LITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKAR-------- 61
Query: 153 IFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEV- 211
+ + GD++D + L++ D + V +LAAQ+ V + + P+ G + LLE
Sbjct: 62 MKLHYGDLSDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAV 121
Query: 212 ---CKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI 268
+ Q A SS +YG +T P SE P S YA K A Y
Sbjct: 122 RLHGQETGRQIKYYQAGSSEMYG-STPPPQSE-TTPFHPRSPYAVAKVAAHWYTVNYREA 179
Query: 269 YGLSLT 274
YGL
Sbjct: 180 YGLFAC 185
|
Length = 340 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 61/273 (22%), Positives = 103/273 (37%), Gaps = 30/273 (10%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND 162
LVTG GF+G H+ L R G+ + + F+ + P L + + I +EGD+ D
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGE-LQEVRVFDLRFSPEL---LEDFSKLQVITYIEGDVTD 56
Query: 163 MALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIV 222
L++ V+H AA V ++ + N+ G ++L+ C A +V
Sbjct: 57 KQDLRRALQGSDV--VIHTAAIIDVF-GKAYRDTIMKVNVKGTQNVLDACVKAG-VRVLV 112
Query: 223 WASSSSVYGLNT-KVPFSEKD----RTDQPASLYAATKKAGEEIAHTYNHIY----GLSL 273
+ SS V G N+ P D Y +K E++ N G
Sbjct: 113 YTSSMEVVGPNSYGQPIVNGDETTPYESTHQDPYPESKALAEKLVLKANGSTLKNGGRLY 172
Query: 274 T-GLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG-CL 331
T LR ++G G P + F R + N + + V D Y+ ++ L
Sbjct: 173 TCALRPAGIFGE-GDPFLFPFLV-RLLKNGLAKFRTGDKN---VLSDRVYVGNVAWAHIL 227
Query: 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364
AA + KK + + + + +P
Sbjct: 228 AARALQD------PKKASSIAGQFYFISDDTPH 254
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 61/252 (24%), Positives = 87/252 (34%), Gaps = 54/252 (21%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTGA G +G ++ L RG V+ LD R E D+
Sbjct: 1 ILVTGANGQLGRELTRLLAERGVEVVALD-------------RP-----------ELDLT 36
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D + L V++ AA V A P N G +L E C +
Sbjct: 37 DPEAVAALVREARPDVVVNAAAYTAVDKAESEPELAYAVNALGPGNLAEACAARG--APL 94
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYN--HIYGLSLTGLRFF 279
+ S+ V+ P+ E D T P ++Y TK AGE+ N H+ LR
Sbjct: 95 IHISTDYVFDGAKGGPYREDDPTG-PLNVYGRTKLAGEQAVLAANPRHLI------LRTA 147
Query: 280 TVYGPWGRPDMAYFFFT--RDILNRKSIPIFE----SPDHGTVARDFTYIDDIVKGCLAA 333
VYG +G F T R R + + + SP T D+ LA
Sbjct: 148 WVYGEYGNN----FVKTMLRLAAERDELRVVDDQLGSP---------TSARDLADALLAL 194
Query: 334 LDTAEKSTGSGG 345
+ + G
Sbjct: 195 IRKRLRGPALAG 206
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 95/367 (25%), Positives = 142/367 (38%), Gaps = 88/367 (23%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
VLVTGA GFVG+ V L +G+ V L + + LE + IVEGD+
Sbjct: 3 VLVTGATGFVGSAVVRLLLEQGEEVRVL---------VRPTSDRRNLEGLDVEIVEGDLR 53
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D A L+K V + H+AA R +P +N+ G +LL A + +
Sbjct: 54 DPASLRK--AVAGCRALFHVAAD--YRLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RV 108
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASL------YAATKKAGEEIAHTYNHIYGLSLTG 275
V+ +SSV L + + D T P+SL Y +K E+ A GL +
Sbjct: 109 VY--TSSVATLGVRGDGTPADET-TPSSLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVI 165
Query: 276 LRFFTVYGPW-------GRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVK 328
+ T GP GR D LN K +P + D G + ++DD+ +
Sbjct: 166 VNPSTPIGPRDIKPTPTGR-------IIVDFLNGK-MPAY--VDTGL---NLVHVDDVAE 212
Query: 329 GCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL 388
G L AL+ RGR R + LG + + + ++ L + A R +KL
Sbjct: 213 GHLLALE------------RGRIGER-YILGGEN-LTLKQILDKLAEITGRPAPR--VKL 256
Query: 389 PRNGDVPFTHANISL----------------------------AQRELGYKPTTDLQTGL 420
PR +P +L A RELGY+ + L
Sbjct: 257 PRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVRELGYRQRP-AREAL 315
Query: 421 KKFVRWY 427
+ V W+
Sbjct: 316 RDAVEWF 322
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 4e-07
Identities = 57/267 (21%), Positives = 89/267 (33%), Gaps = 38/267 (14%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD-PSLKKARQALLERSGIFIVEGDI 160
VLVTGA+GFV +HV L RG V + A R + + +
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLDLDAKPGRLELAVAD--- 57
Query: 161 NDMALLKKLFDVV--SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
++ FD V V H+A V ++ ++PN + I G ++ L+ A
Sbjct: 58 ---LTDEQSFDEVIKGCAGVFHVATP--VSFSSKDPNEVIKPAIGGTLNALKAAAAAKSV 112
Query: 219 PAIVWASSSSVYGLN----TKVPFSEKDRTD--------QPASLYAATKKAGEEIAHTYN 266
V SS+ + + EK + A +YAA+K E+ A +
Sbjct: 113 KRFVLTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKAAWKFA 172
Query: 267 HIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL---NRKSIPIFESPDHGTVARDFTYI 323
+ L + G + L N P G + ++
Sbjct: 173 DENNIDLITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGY----YVHV 228
Query: 324 DDIVKGCLAALDTAEKSTGSGGKKRGR 350
DI CLA + E RGR
Sbjct: 229 VDI---CLAHIGCLEL-----PIARGR 247
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 66/340 (19%), Positives = 107/340 (31%), Gaps = 80/340 (23%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+TGA G +GT + AL + V+ D R L DI
Sbjct: 3 ILITGANGQLGTELRRALPGEFE-VIATD-------------RAEL-----------DIT 37
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D + ++ V++ AA V A P N G +L + +
Sbjct: 38 DPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGAR--L 95
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEE--IAHTYNHIYGLSLTGLRFF 279
V S+ V+ P+ E D + P ++Y +K AGEE A H+ LR
Sbjct: 96 VHISTDYVFDGEKGGPYKETDTPN-PLNVYGRSKLAGEEAVRAAGPRHLI------LRTS 148
Query: 280 TVYGPWGRPDMAYFFFT--RDILNRKSIPIFE----SPDHGTVARDFTYIDDIVKGCLAA 333
VYG +G F T R K + + + SP TY +D+ L
Sbjct: 149 WVYGEYGNN----FVKTMLRLAKEGKELKVVDDQYGSP---------TYTEDLADAILEL 195
Query: 334 LDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR--------NI 385
L+ + V++L N+ + + V +
Sbjct: 196 LEK-------------EKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYP 242
Query: 386 MKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVR 425
R + + A G + + LK +
Sbjct: 243 TPAKRPANSSLDTKKLEKA---FGLSL-PEWREALKALLD 278
|
Length = 281 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 40/195 (20%)
Query: 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND-----YYDPSLKK---ARQALLE 149
N S+L+TG G G + L L+N+N Y LK+ ++
Sbjct: 3 NNKSILITGGTGSFGKAFISRL---------LENYNPKKIIIYSRDELKQWEMQQKFPAP 53
Query: 150 RSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLL 209
FI GD+ D L + V + V+H AA V A NP + +NI G +++
Sbjct: 54 CLRFFI--GDVRDKERLTRALRGVDY--VVHAAALKQVPAAEYNPFECIRTNINGAQNVI 109
Query: 210 EVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY 269
+ + V L+T D+ P +LY ATK A +++ N+I
Sbjct: 110 DAAIDNG---------VKRVVALST-------DKAANPINLYGATKLASDKLFVAANNIS 153
Query: 270 GLSLTGLRFFTV-YG 283
G G RF V YG
Sbjct: 154 GSK--GTRFSVVRYG 166
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 29/179 (16%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLG-------LDNFNDYYDPSLKKARQALLERSGIF 154
VLVTGA GF+ +H+ L + G V G + R LE
Sbjct: 2 VLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKSAKLKALLKAAGYNDR---LE---FV 55
Query: 155 IVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP-NSYVHSNIAGLVSLLEVCK 213
IV+ A + L V +V+H+A+ + + + + + G +++LE K
Sbjct: 56 IVDDLTAPNAWDEALKGV---DYVIHVASP--FPFTGPDAEDDVIDPAVEGTLNVLEAAK 110
Query: 214 NANPQPAIVWASS-SSVYGLN---TKVPFSEKDRTD------QPASLYAATKKAGEEIA 262
A +V SS ++V F+E+D D Y A+K E+ A
Sbjct: 111 AAGSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAA 169
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 56/296 (18%), Positives = 98/296 (33%), Gaps = 49/296 (16%)
Query: 98 NGISVLVTGAAGFVGTHVSAALKRRGDG---VLGLDNFNDYYDPSLKKARQALLERSGIF 154
G +VLVTG G +G+ + + + + D + Y + + +
Sbjct: 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLY---LIDMELREKFPELKLR 305
Query: 155 IVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKN 214
GD+ D +++ + V H AA V NP + +N+ G ++ E
Sbjct: 306 FYIGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIK 365
Query: 215 ANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLT 274
+ K D+ P ++ ATK+ E++ N + T
Sbjct: 366 NGVK----------------KFVLISTDKAVNPTNVMGATKRLAEKLFQAANRNVSGTGT 409
Query: 275 ---GLRFFTVYGPWGR--PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329
+RF V G G P F + I + + + R F I + V+
Sbjct: 410 RFCVVRFGNVLGSRGSVIP-----LFKKQIAEGGPLTV----TDPDMTRFFMTIPEAVQL 460
Query: 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNI 385
L A + GG+ +F L PV + DL + L +I
Sbjct: 461 VLQAG-----AIAKGGE--------IFVLDMGEPVKIIDLAKAMIELAGQTPPGDI 503
|
Length = 588 |
| >gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 86/370 (23%), Positives = 137/370 (37%), Gaps = 72/370 (19%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ G GF+G H+S + D V G+D D + R E I I + I
Sbjct: 4 VLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFE-GDITINKEWI 62
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKN------ 214
KK DV+ + L A A P +YV + V L+ N
Sbjct: 63 EYHV--KKC-DVI-----LPLVAIA-------TPATYVKQPLR--VFELDFEANLPIVRS 105
Query: 215 -ANPQPAIVWASSSSVYGLNTKVPFSEKDRT------DQPASLYAATKKAGEEIAHTYNH 267
+V+ S+S VYG+ F + ++P +YA +K+ + + Y
Sbjct: 106 AVKYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLMDRVIWAYGM 165
Query: 268 IYGLSLTGLRFFTVYGPWGRPDMAYFF----------FTRDILNRKSIPIFESPDHGTVA 317
GL+ T R F GP D Y F I+ + I + D G+
Sbjct: 166 EEGLNFTLFRPFNWIGP--GLDSIYTPKEGSSRVVTQFLGHIVRGEPISLV---DGGSQK 220
Query: 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN-TSPVPVSDLVSILERL 376
R FT IDD + + ++ K G A +++N+GN + V +L + + L
Sbjct: 221 RAFTDIDDGIDALMKIIEN----------KDGVASGKIYNIGNPKNNHSVRELANKMLEL 270
Query: 377 LKV------KAKR-NIMKLPR-----NG--DVPFTHANISLAQRELGYKPTTDLQTGLKK 422
AK+ +++ G DV I +ELG+ P T + L++
Sbjct: 271 AAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRVPKIDNTMQELGWAPKTTMDDALRR 330
Query: 423 FVRWYLSYYA 432
Y + A
Sbjct: 331 IFEAYRGHVA 340
|
Length = 347 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 62/251 (24%), Positives = 102/251 (40%), Gaps = 57/251 (22%)
Query: 102 VLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFN--------------DYYDPSLKKARQA 146
++VTG AGF+G+++ AL +G +L +DN DY D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLDIADYMDK-------- 53
Query: 147 LLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGV-----RYAMQNPNSYVHSN 201
E I+ GD D ++ +F H A + +Y M N +Y +S
Sbjct: 54 --EDFLAQIMAGD--DFGDIEAIF---------HEGACSSTTEWDGKYMMDN--NYQYSK 98
Query: 202 IAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEI 261
LL C + ++ASS++ YG T F E+ ++P ++Y +K +E
Sbjct: 99 -----ELLHYC--LEREIPFLYASSAATYGGRTDD-FIEEREYEKPLNVYGYSKFLFDEY 150
Query: 262 AHTYNHIYGLSLTGLRFFTVYGP--WGRPDMAY--FFFTRDILNRKSIPIFESPDHGTVA 317
+ G R+F VYGP + MA F + N ++ +FE ++
Sbjct: 151 VRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSEN--FK 208
Query: 318 RDFTYIDDIVK 328
RDF Y+ D+
Sbjct: 209 RDFVYVGDVAA 219
|
Length = 308 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 52/247 (21%), Positives = 78/247 (31%), Gaps = 52/247 (21%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG-IFIVEG 158
+ V V GA GF+G +V L +RG V+ Y R ++ G + VE
Sbjct: 1 MVVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCEAYA------RRLLVMGDLGQVLFVEF 54
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNS---YVHSNIAGLVSLLEVCKNA 215
D+ D ++K + V++L G Y + N VH ++ + K A
Sbjct: 55 DLRDDESIRKALEGS--DVVINLV---GRLY--ETKNFSFEDVHVEGPERLA--KAAKEA 105
Query: 216 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSL-- 273
V L + S S Y +K GEE
Sbjct: 106 G------------VERL---IHISALGADANSPSKYLRSKAEGEE--------AVREAFP 142
Query: 274 --TGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331
T +R V+G R F R +P G Y+ D+ +
Sbjct: 143 EATIVRPSVVFGREDR------FLNRFAKLLAFLPFPPLIGGGQTKFQPVYVGDVAEAIA 196
Query: 332 AALDTAE 338
AL E
Sbjct: 197 RALKDPE 203
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 29/211 (13%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN----------DYYDP--SLKKARQALLE 149
V+V G G+ G + L +RG V +DN D P S+ + + E
Sbjct: 50 VMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKE 109
Query: 150 RSG--IFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYV---HSNIAG 204
SG I + GDI D L + F V+H Q Y+M + + V H+N+ G
Sbjct: 110 VSGKEIELYVGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIG 169
Query: 205 LVSLLEVCKNANPQPAIVWASSSSVYGL-NTKVP-----FSEKDRTD------QPASLYA 252
+++L K P +V + YG N + + RTD Q +S Y
Sbjct: 170 TLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYH 229
Query: 253 ATKKAGEEIAHTYNHIYGLSLTGLRFFTVYG 283
+K +G+ T L VYG
Sbjct: 230 LSKVHDSHNIAFTCKAWGIRATDLNQGVVYG 260
|
Length = 442 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 66/319 (20%), Positives = 107/319 (33%), Gaps = 86/319 (26%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGD--GVLGL--------------DNFNDYYDPSLKKAR 144
+VL+TGA GF+G ++ L RR V+ L + Y +
Sbjct: 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSY------RLW 54
Query: 145 QALLERSGIFIVEGDINDMAL----LKKLFDVVSFTHVMHLAAQAGVRY---AMQNPNSY 197
L R I +V GD+++ L + + ++H A Y ++ N
Sbjct: 55 HEDLARERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALVNWVYPYSELRGAN-- 112
Query: 198 VHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP----ASLYAA 253
+ G +L + + +P + + S+ SV +E D T P A YA
Sbjct: 113 ----VLGTREVLRLAASGRAKP-LHYVSTISVGAAIDLSTVTEDDATVTPPPGLAGGYAQ 167
Query: 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH 313
+K E + + S GL T+ P GR I +
Sbjct: 168 SKWVAELL------VREASDRGLPV-TIVRP-GR-------------------ILGNSYT 200
Query: 314 GTVA-RDFTYIDDIVKGCLAAL----------------DTAEKSTGSGGKKRGRAQLRVF 356
G + D + +VKGCLA A + A VF
Sbjct: 201 GAINSSDILW--RMVKGCLALGAYPQSPELTEDLTPVDFVARAIVVLSSRPAASAGGPVF 258
Query: 357 NLGNTSPVPVSDLVSILER 375
++ N PV + + + LER
Sbjct: 259 HVVNPEPVSLDEFLDWLER 277
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 44/190 (23%), Positives = 68/190 (35%), Gaps = 26/190 (13%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+TG GF+G ++ L +RG V L R EG
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTIL-------------TRSP--PPGANTKWEGYKP 45
Query: 162 DMALLKKLFDVVSFTHVMHLAAQ--AGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
+ V++LA + A R+ + S I L+E A Q
Sbjct: 46 WAGEDADSLE--GADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRLLVEAIAAA-EQK 102
Query: 220 AIVWASSSSV--YGLNTKVPFSEKDRTDQPASLYAA-TKKAGEEIAHTYNHIYGLSLTGL 276
V+ S+S+V YG + ++E+D + A + EE A + G + L
Sbjct: 103 PKVFISASAVGYYGPSEDREYTEEDSP--AGDDFLAELCRDWEEAAQAAEDL-GTRVVLL 159
Query: 277 RFFTVYGPWG 286
R V GP G
Sbjct: 160 RTGIVLGPKG 169
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 51/271 (18%), Positives = 92/271 (33%), Gaps = 57/271 (21%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
VL+ G G++G ++ L +G V G + + A +G+ + D+
Sbjct: 1 VLILGC-GYLGQRLARQLLAQGWQVTGT---------TRSPEKLAADRPAGVTPLAADLT 50
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
LL D + V+ L AG +P GL +LL+ +
Sbjct: 51 QPGLLAD-VDHL----VISLPPPAGSYRGGYDP---------GLRALLDALAQLPAVQRV 96
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
++ SS+ VYG + + + ++ P++ E+ T LR +
Sbjct: 97 IYLSSTGVYG-DQQGEWVDETSPPNPSTESGRALLEAEQALLALGS---KPTTILRLAGI 152
Query: 282 YGPWGRPDMAYFFFTRDILNR--KSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339
YGP R L R + + + T + ++DD+V AL
Sbjct: 153 YGPG-----------RHPLRRLAQGTGRPPAGNAPT---NRIHVDDLVGALAFALQ---- 194
Query: 340 STGSGGKKRGRAQLRVFNLGNTSPVPVSDLV 370
R V+N+ + PV +
Sbjct: 195 --------RPAPG-PVYNVVDDLPVTRGEFY 216
|
Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 19/86 (22%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQ----ALLERSGIFIVE 157
V VTGA GF+G+ V L G V+GL AR A LE +G +
Sbjct: 3 VFVTGATGFIGSAVVRELVAAGHEVVGL-------------ARSDAGAAKLEAAGAQVHR 49
Query: 158 GDINDMALLKKLFDVVSFTHVMHLAA 183
GD+ D+ +L+K V+HLA
Sbjct: 50 GDLEDLDILRK--AAAEADAVIHLAF 73
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|187672 cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 24/134 (17%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
SVL+TG G+ G + AL + G V+ D +++ +Q L E GI ++ D+
Sbjct: 1 SVLITGGGGYFGFRLGCALAKSGVHVILFD---------IRRPQQELPE--GIKFIQADV 49
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQ-----NPNSYVHSNIAGLVSLLEVCKNA 215
D++ L+K V V H+A+ Y M N N+ G ++++VC
Sbjct: 50 RDLSQLEKAVAGVDC--VFHIAS-----YGMSGREQLNRELIEEINVRGTENIIQVCVRR 102
Query: 216 NPQPAIVWASSSSV 229
P +++ S+ +V
Sbjct: 103 R-VPRLIYTSTFNV 115
|
An uncharacterized subgroup of the 3b-HSD-like extended-SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD(P)-binding motif of extended-SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 339 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 41/189 (21%), Positives = 69/189 (36%), Gaps = 31/189 (16%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDG---VLGLDNFNDYYDPSLKKARQALLERSGIFIVEG 158
VLVTG G +G+ + + + + D F Y +++ + + G
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLY---EIRQELRQEYNDPKLRFFIG 57
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
D+ D L++ + V H AA V NP + +N+ G ++ E
Sbjct: 58 DVRDRERLERAMEQHGVDTVFHAAALKHVPLVEYNPMEAIKTNVLGTENVAEAAIE---- 113
Query: 219 PAIVWASSSSVYGLNTKVPFSEKDRTDQ---PASLYAATKKAGEEIAHTYNHIYGLSLTG 275
G+ V S TD+ P ++ ATK+ E++ N G T
Sbjct: 114 -----------NGVEKFVLIS----TDKAVNPTNVMGATKRLAEKLFQAANRESGSGKT- 157
Query: 276 LRFFTV-YG 283
RF V +G
Sbjct: 158 -RFSVVRFG 165
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 33/161 (20%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDI 160
+ V GA G G + L RG V L +R G+ V+ D+
Sbjct: 1 IAVIGATGKTGRRLVKELLARGHQVTAL-------------SRNPSKAPAPGVTPVQKDL 47
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D+A L + AGV + + + G+ LL+ A +
Sbjct: 48 FDLADLAEAL--------------AGVDAVVDAFGA-RPDDSDGVKHLLDAAARAGVRR- 91
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEI 261
IV S++ +Y F D P YA K A EE+
Sbjct: 92 IVVVSAAGLYRDEPG-TFRLDDAPLFP--PYARAKAAAEEL 129
|
Length = 182 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 31/112 (27%), Positives = 40/112 (35%), Gaps = 34/112 (30%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQA-LLERSGIFIVEGD 159
VLV GA G VG HV L RG V L ++ QA LE +G +V GD
Sbjct: 1 KVLVVGATGKVGRHVVRELLDRGYQVRAL----------VRDPSQAEKLEAAGAEVVVGD 50
Query: 160 INDMALLKKLF---DVVSFTH--------------------VMHLAAQAGVR 188
+ D L D V ++ A +AGV+
Sbjct: 51 LTDAESLAAALEGIDAVISAAGSGGKGGPRTEAVDYDGNINLIDAAKKAGVK 102
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|191263 pfam05368, NmrA, NmrA-like family | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LV GA G+ G V A + G V L DP + A+ L+ +G+ +VEGD++
Sbjct: 1 ILVFGATGYQGGSVVRASLKAGHPVRALVR-----DPKSELAKS--LKAAGVELVEGDLD 53
Query: 162 DMALLKKLF---DVV 173
D L + DVV
Sbjct: 54 DHESLVEALKGVDVV 68
|
NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 439 | |||
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.98 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.97 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.97 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.97 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.96 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.95 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.95 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.94 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.94 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.93 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.92 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.92 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.92 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.92 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.92 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.92 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.91 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.91 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.91 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.91 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.91 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.91 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.91 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.91 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.9 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.9 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.9 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.9 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.9 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.9 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.9 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.9 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.89 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.89 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.89 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.89 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.89 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.89 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.89 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.89 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.89 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.89 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.89 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.89 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.89 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.88 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.88 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.88 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.88 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.88 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.88 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.88 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.88 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.88 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.87 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.87 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.87 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.87 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.87 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.87 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.87 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.87 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.87 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.87 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.87 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.87 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.87 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.87 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.87 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.86 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.86 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.86 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.86 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.86 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.86 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.86 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.86 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.86 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.86 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.85 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.85 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.85 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.85 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.85 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.85 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.85 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.85 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.85 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.85 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.85 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.85 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.85 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.84 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.84 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.84 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.84 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.84 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.84 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.84 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.84 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.84 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.84 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.84 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.84 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.83 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.83 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.83 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.83 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.82 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.82 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.82 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.81 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.81 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.81 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.81 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.81 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.8 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.8 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.8 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.79 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.79 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.79 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.79 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.79 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.78 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.78 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.78 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.78 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.77 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.76 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.76 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.76 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.75 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.74 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.74 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.74 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.73 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.73 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.72 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.72 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.72 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.72 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.71 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.71 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.71 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.7 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.68 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.66 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.56 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.54 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.54 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.51 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.5 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.5 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.47 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.33 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.25 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.2 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.17 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.15 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.13 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.12 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.04 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.91 | |
| PLN00106 | 323 | malate dehydrogenase | 98.78 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.73 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.7 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.67 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.52 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.48 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.47 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.36 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.35 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.26 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.22 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.2 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.15 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.15 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.14 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.1 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.1 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.05 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.95 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.85 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.79 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.77 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.73 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.64 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.61 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.58 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.58 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.53 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 97.52 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.52 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.48 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.43 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.41 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.34 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 97.31 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.28 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.27 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 97.27 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.24 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.22 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.22 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.21 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.21 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.2 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.17 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.13 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.11 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.11 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.1 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.07 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.03 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.01 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.01 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.0 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.0 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.99 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.98 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.95 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.86 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.82 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.81 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.78 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.71 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.7 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.69 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.69 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 96.64 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.63 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.61 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.61 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.61 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.61 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.59 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.56 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.54 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.54 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.53 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.52 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.49 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 96.48 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.48 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 96.48 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.46 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.46 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.44 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 96.44 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.42 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.41 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.4 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.4 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.34 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.33 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.33 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.33 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.31 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.3 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.26 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.25 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.23 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.22 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.2 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.18 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.18 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.17 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.09 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.09 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.08 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 96.08 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.07 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.05 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.02 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.0 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.93 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.92 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.9 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.87 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.86 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 95.85 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 95.84 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 95.83 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.8 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.77 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.75 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.72 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 95.72 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.68 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 95.68 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.63 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 95.61 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 95.6 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.58 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 95.58 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 95.54 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.52 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 95.51 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 95.48 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 95.45 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 95.4 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 95.39 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.38 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 95.38 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.36 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.36 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.31 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 95.31 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 95.31 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 95.29 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.29 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 95.25 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 95.25 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.25 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.24 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.2 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.2 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 95.17 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 95.14 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 95.13 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 95.1 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 95.09 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.07 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 95.06 | |
| PLN02494 | 477 | adenosylhomocysteinase | 95.04 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.02 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.94 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 94.92 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 94.87 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.81 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 94.78 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 94.77 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 94.76 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 94.74 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 94.71 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 94.71 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 94.7 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 94.7 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 94.7 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.69 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.68 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 94.65 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 94.65 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 94.61 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 94.6 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.58 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.58 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 94.58 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 94.58 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.57 | |
| PLN02928 | 347 | oxidoreductase family protein | 94.56 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 94.48 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 94.46 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.46 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 94.41 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 94.41 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.41 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.41 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.37 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 94.33 | |
| TIGR02823 | 323 | oxido_YhdH putative quinone oxidoreductase, YhdH/Y | 94.32 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 94.32 |
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-50 Score=361.81 Aligned_cols=311 Identities=27% Similarity=0.445 Sum_probs=275.7
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
|++|||||.||||+..+++++++.. +|+.++.- .+.... .........++..|+++|++|.+.+.+++++..+|+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkL--TYAgn~-~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~ 77 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKL--TYAGNL-ENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDA 77 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecc--cccCCH-HHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCe
Confidence 5799999999999999999999864 45666542 122221 122344456799999999999999999999988899
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC--CCCCCCCCCCCCChHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKV--PFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~--~~~e~~~~~~p~~~Y~~sK 255 (439)
|+|+|+-.+++.+..+|..++++|+.||.+||+++++....-||+++|+..|||.-... .+.|.++. .|.++|++||
T Consensus 78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~-~PsSPYSASK 156 (340)
T COG1088 78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPY-NPSSPYSASK 156 (340)
T ss_pred EEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCC-CCCCCcchhh
Confidence 99999999999999999999999999999999999998854599999999999976654 57788877 8999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHh
Q 013602 256 KAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335 (439)
Q Consensus 256 ~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 335 (439)
+++..+++++.+.+|++++|.|+++-|||+..+..+++.++..++.|+++++| |+|.+.|||+||+|-++|+..++.
T Consensus 157 AasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvY---GdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 157 AASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVY---GDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCcee---cCCcceeeeEEeHhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 799999999999999999999988
Q ss_pred hchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccc-----cccccCCCCCCCCcccCChHHHHHHcCC
Q 013602 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK-----RNIMKLPRNGDVPFTHANISLAQRELGY 410 (439)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-----~~~~~~~~~~~~~~~~~d~~k~~~~LG~ 410 (439)
.... |++|||+++...+-.|+++.|.+.+|...+ +.++ ..+++....+.+|.+|++++|||
T Consensus 234 kg~~-------------GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V-~DRpGHD~RYaid~~Ki~~eLgW 299 (340)
T COG1088 234 KGKI-------------GETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFV-EDRPGHDRRYAIDASKIKRELGW 299 (340)
T ss_pred cCcC-------------CceEEeCCCccchHHHHHHHHHHHhCccccchhhheEec-cCCCCCccceeechHHHhhhcCC
Confidence 7553 499999999999999999999999998777 3333 46788888888999999999999
Q ss_pred CccCcHHHHHHHHHHHHHHHc
Q 013602 411 KPTTDLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 411 ~p~~~l~e~l~~~v~~~~~~~ 431 (439)
.|.+++++||+++++||.+|.
T Consensus 300 ~P~~~fe~GlrkTv~WY~~N~ 320 (340)
T COG1088 300 RPQETFETGLRKTVDWYLDNE 320 (340)
T ss_pred CcCCCHHHHHHHHHHHHHhch
Confidence 999999999999999999874
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-48 Score=387.40 Aligned_cols=306 Identities=24% Similarity=0.382 Sum_probs=247.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
..|+|||||||||||++|+++|+++|++|++++|........ ........+++++.+|+.+.. +.+ +|+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~----~~~~~~~~~~~~~~~Di~~~~-----~~~--~D~ 187 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKEN----LVHLFGNPRFELIRHDVVEPI-----LLE--VDQ 187 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhH----hhhhccCCceEEEECcccccc-----ccC--CCE
Confidence 457999999999999999999999999999999854221111 111112346888899987653 334 599
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC----CCCCCChHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR----TDQPASLYAA 253 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~----~~~p~~~Y~~ 253 (439)
|||+|+.........++...+++|+.||.+|+++|++.+. +||++||.+|||.....+..|+.. +..|.+.|+.
T Consensus 188 ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~ 265 (436)
T PLN02166 188 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDE 265 (436)
T ss_pred EEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHH
Confidence 9999997655444567888999999999999999999873 999999999999766666777632 2246688999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC--CChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHH
Q 013602 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP--DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331 (439)
Q Consensus 254 sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 331 (439)
+|.++|.+++.+.+.++++++++||++||||+... ...+..++..++.++++.++ +++.+.++|+|++|++++++
T Consensus 266 SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~---g~g~~~rdfi~V~Dva~ai~ 342 (436)
T PLN02166 266 GKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVY---GDGKQTRSFQYVSDLVDGLV 342 (436)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEe---CCCCeEEeeEEHHHHHHHHH
Confidence 99999999999988889999999999999998642 34567788888999888776 57889999999999999999
Q ss_pred HHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCC
Q 013602 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYK 411 (439)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~ 411 (439)
.+++... +++|||++++.+|+.|+++.+.+.+|.+..+.+.+. ...+.....+|++|+++.|||+
T Consensus 343 ~~~~~~~--------------~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~-~~~~~~~~~~d~~Ka~~~LGw~ 407 (436)
T PLN02166 343 ALMEGEH--------------VGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPN-TADDPHKRKPDISKAKELLNWE 407 (436)
T ss_pred HHHhcCC--------------CceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCC-CCCCccccccCHHHHHHHcCCC
Confidence 9886422 169999999999999999999999997766555442 3344455678999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHccCC
Q 013602 412 PTTDLQTGLKKFVRWYLSYYAGG 434 (439)
Q Consensus 412 p~~~l~e~l~~~v~~~~~~~~~~ 434 (439)
|+++++++|+++++||+++....
T Consensus 408 P~~sl~egl~~~i~~~~~~~~~~ 430 (436)
T PLN02166 408 PKISLREGLPLMVSDFRNRILNE 430 (436)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999998876543
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-48 Score=351.20 Aligned_cols=310 Identities=29% Similarity=0.450 Sum_probs=267.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+||||||.||||+|++.+|++.|++|+++|+..+........ ..+.++++|+.|.+.+.++|++.++|.||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~--------~~~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLK--------LQFKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhh--------ccCceEEeccccHHHHHHHHHhcCCCEEE
Confidence 5899999999999999999999999999999866543322211 11789999999999999999999999999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+||...+..+.++|..+++.|+.||.+|+++++++++. +|||-||+.+||.....|+.|+.+. .|.++||.||++.|
T Consensus 73 HFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~-~~vFSStAavYG~p~~~PI~E~~~~-~p~NPYG~sKlm~E 150 (329)
T COG1087 73 HFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK-KFIFSSTAAVYGEPTTSPISETSPL-APINPYGRSKLMSE 150 (329)
T ss_pred ECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCC-EEEEecchhhcCCCCCcccCCCCCC-CCCCcchhHHHHHH
Confidence 999999899999999999999999999999999999965 9999999999999999999999988 69999999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCC------C---CCChHHHHHHHHHcCCC-CceeecC---CCCcceeeeeeHHHH
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWG------R---PDMAYFFFTRDILNRKS-IPIFESP---DHGTVARDFTYIDDI 326 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~------~---~~~~~~~~~~~~~~g~~-~~~~~~~---~~~~~~~~~i~v~Dv 326 (439)
.+++.+++.++++++++|-.++.|-.. + .+.+++.++..++-..+ +.+|+.- .+|...||||||.|+
T Consensus 151 ~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DL 230 (329)
T COG1087 151 EILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDL 230 (329)
T ss_pred HHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHH
Confidence 999999999999999999999998531 1 22355666665554333 4443210 257899999999999
Q ss_pred HHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHH
Q 013602 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQR 406 (439)
Q Consensus 327 a~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 406 (439)
|++|+.+++.... .+ ...+||+++|...|+.|+++.+.+..|.+.+....+ .+.+|.+.+.+|.+|+++
T Consensus 231 A~aH~~Al~~L~~-~g---------~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~-RR~GDpa~l~Ad~~kA~~ 299 (329)
T COG1087 231 ADAHVLALKYLKE-GG---------SNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAP-RRAGDPAILVADSSKARQ 299 (329)
T ss_pred HHHHHHHHHHHHh-CC---------ceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCC-CCCCCCceeEeCHHHHHH
Confidence 9999999998876 22 116999999999999999999999999888876654 688999999999999999
Q ss_pred HcCCCccC-cHHHHHHHHHHHHHHH
Q 013602 407 ELGYKPTT-DLQTGLKKFVRWYLSY 430 (439)
Q Consensus 407 ~LG~~p~~-~l~e~l~~~v~~~~~~ 430 (439)
+|||+|++ ++++.++..+.|...+
T Consensus 300 ~Lgw~p~~~~L~~ii~~aw~W~~~~ 324 (329)
T COG1087 300 ILGWQPTYDDLEDIIKDAWDWHQQR 324 (329)
T ss_pred HhCCCcccCCHHHHHHHHHHHhhhh
Confidence 99999998 9999999999999853
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=367.45 Aligned_cols=317 Identities=28% Similarity=0.474 Sum_probs=256.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
+++|+|||||||||||++|+++|+++|++|++++|................ ....++.++.+|+.|.+.+.++++++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~- 91 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV- 91 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC-
Confidence 567899999999999999999999999999999985432221111111100 01136889999999999999999875
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|+|||+|+.........++...+++|+.||.+++++|++.+.. +||++||+++||.....+..|++.. .|.+.|+.+
T Consensus 92 -d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~e~~~~-~p~~~Y~~s 168 (348)
T PRK15181 92 -DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLPKIEERIG-RPLSPYAVT 168 (348)
T ss_pred -CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCCCCCCCCCC-CCCChhhHH
Confidence 9999999986655566778889999999999999999999865 9999999999997666667776654 678899999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
|.++|.+++.+.+.++++++++||++||||+..+. .+++.++..++.++++.++ +++.+.++|+|++|+|+++
T Consensus 169 K~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~---g~g~~~rd~i~v~D~a~a~ 245 (348)
T PRK15181 169 KYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYIN---GDGSTSRDFCYIENVIQAN 245 (348)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEe---CCCCceEeeEEHHHHHHHH
Confidence 99999999999888899999999999999987543 4567788888888888776 6889999999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcc------ccccccCCCCCCCCcccCChHHH
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKA------KRNIMKLPRNGDVPFTHANISLA 404 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~------~~~~~~~~~~~~~~~~~~d~~k~ 404 (439)
+.++...... ..+++|||++++++|+.|+++.+.+.++... .+.. ...+..+.....+|.+|+
T Consensus 246 ~~~~~~~~~~----------~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~k~ 314 (348)
T PRK15181 246 LLSATTNDLA----------SKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIY-KDFRDGDVKHSQADITKI 314 (348)
T ss_pred HHHHhccccc----------CCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCccc-CCCCCCcccccccCHHHH
Confidence 9877542210 1237999999999999999999999987321 1111 112344555678999999
Q ss_pred HHHcCCCccCcHHHHHHHHHHHHHHHc
Q 013602 405 QRELGYKPTTDLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 405 ~~~LG~~p~~~l~e~l~~~v~~~~~~~ 431 (439)
+++|||+|+++++|+|+++++|+..+.
T Consensus 315 ~~~lGw~P~~sl~egl~~~~~w~~~~~ 341 (348)
T PRK15181 315 KTFLSYEPEFDIKEGLKQTLKWYIDKH 341 (348)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998764
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=363.44 Aligned_cols=303 Identities=24% Similarity=0.399 Sum_probs=245.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
++|+|||||||||||++|+++|+++|++|++++|..... ...........+++++.+|+.+.. +.+ +|+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~----~~~~~~~~~~~~~~~i~~D~~~~~-----l~~--~D~ 186 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGR----KENVMHHFSNPNFELIRHDVVEPI-----LLE--VDQ 186 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccc----hhhhhhhccCCceEEEECCccChh-----hcC--CCE
Confidence 568999999999999999999999999999998743211 111111223457888999987753 334 499
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC----CCCCCChHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR----TDQPASLYAA 253 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~----~~~p~~~Y~~ 253 (439)
|||+|+.........++...+++|+.|+.+|+++|++.+. +||++||..+||.....+..|+.+ +..+.+.|+.
T Consensus 187 ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~ 264 (442)
T PLN02206 187 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDE 264 (442)
T ss_pred EEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECChHHhCCCCCCCCCccccccCCCCCccchHHH
Confidence 9999997655444567889999999999999999999884 999999999999766556666532 2234678999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC--CCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHH
Q 013602 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR--PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331 (439)
Q Consensus 254 sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 331 (439)
+|.++|.++..+.+.++++++++||++||||+.. ....+..++..++.++++.++ +++++.++|+|++|+|++++
T Consensus 265 SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~---g~G~~~rdfi~V~Dva~ai~ 341 (442)
T PLN02206 265 GKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY---GDGKQTRSFQFVSDLVEGLM 341 (442)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEe---CCCCEEEeEEeHHHHHHHHH
Confidence 9999999999998888999999999999999753 234566788888888888776 57889999999999999999
Q ss_pred HHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCC
Q 013602 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYK 411 (439)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~ 411 (439)
.+++... +++|||++++++|+.|+++.+.+.+|.+..+.+.+. ...+.....+|++|++++|||+
T Consensus 342 ~a~e~~~--------------~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~-~~~~~~~~~~d~sKa~~~LGw~ 406 (442)
T PLN02206 342 RLMEGEH--------------VGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPN-TEDDPHKRKPDITKAKELLGWE 406 (442)
T ss_pred HHHhcCC--------------CceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCC-CCCCccccccCHHHHHHHcCCC
Confidence 9886432 158999999999999999999999987666554442 2334455678999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHc
Q 013602 412 PTTDLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 412 p~~~l~e~l~~~v~~~~~~~ 431 (439)
|+++++|+|+++++||++..
T Consensus 407 P~~~l~egl~~~~~~~~~~~ 426 (442)
T PLN02206 407 PKVSLRQGLPLMVKDFRQRV 426 (442)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998764
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=342.66 Aligned_cols=318 Identities=47% Similarity=0.685 Sum_probs=281.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+++||||||.||||+|++.+|+++|+.|+++|+..+.......+..+.......+.++++|++|.++++++|+.+++|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 47899999999999999999999999999999999888777777666665668999999999999999999999999999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
+|.|+....+++.++|..+...|+.||.+|++.+++++ .+.+|+.||+.+||.....|++|+++...|.++|+.+|.+.
T Consensus 82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~-~~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~i 160 (343)
T KOG1371|consen 82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN-VKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAI 160 (343)
T ss_pred EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC-CceEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHHH
Confidence 99999999999999999999999999999999999999 66999999999999999999999999877999999999999
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccC--CCCCCCChHHHHH----------------HHHHcCCCCceeecCCCCcceeee
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYG--PWGRPDMAYFFFT----------------RDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G--~~~~~~~~~~~~~----------------~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
|++++.+++.++..+..||..+++| |++..+.....+. ....-|.+.... +++..+++
T Consensus 161 E~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~----dgt~vrdy 236 (343)
T KOG1371|consen 161 EEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTI----DGTIVRDY 236 (343)
T ss_pred HHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCccccc----CCCeeecc
Confidence 9999999998899999999999999 6554332211111 111123333332 56899999
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHAN 400 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d 400 (439)
||+-|.|+.++.+++..... ...++||++.+...++.+|+.++++..|.+.++...+. +.++...++++
T Consensus 237 i~v~Dla~~h~~al~k~~~~----------~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~-R~gdv~~~ya~ 305 (343)
T KOG1371|consen 237 IHVLDLADGHVAALGKLRGA----------AEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPR-RNGDVAFVYAN 305 (343)
T ss_pred eeeEehHHHHHHHhhccccc----------hheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCC-CCCCceeeeeC
Confidence 99999999999999877642 23369999999999999999999999999999999988 99999999999
Q ss_pred hHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 401 ISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 401 ~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
.++++++|||+|.+.++|+++++++|+.++..
T Consensus 306 ~~~a~~elgwk~~~~iee~c~dlw~W~~~np~ 337 (343)
T KOG1371|consen 306 PSKAQRELGWKAKYGLQEMLKDLWRWQKQNPS 337 (343)
T ss_pred hHHHHHHhCCccccCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998864
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=346.82 Aligned_cols=313 Identities=21% Similarity=0.247 Sum_probs=247.7
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh---hhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL---LERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
|+||||||+||||++++++|+++|++|++++|..+............. ....+++++.+|++|.+++.+++++.++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999996542111110000000 01246899999999999999999988889
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ--PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~--~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
+|||+|+.........++...+++|+.||.+++++|++.+.. ++||++||.++||.....+..|+.+. .|.+.|+.|
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 159 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPF-YPRSPYAAA 159 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCC-CCCChhHHH
Confidence 999999986554444566788899999999999999987743 38999999999997666677777665 688999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC---ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD---MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 331 (439)
|.++|.+++.+++++|+++.+.|+.++|||+.... ..+..++..+..++....+. +++++.++|+||+|+|++++
T Consensus 160 K~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~g~~~rd~i~V~D~a~a~~ 237 (343)
T TIGR01472 160 KLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYL--GNLDAKRDWGHAKDYVEAMW 237 (343)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceee--CCCccccCceeHHHHHHHHH
Confidence 99999999999988899999999999999975432 22334555566676443321 57889999999999999999
Q ss_pred HHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccc-------------------cccC-CCC
Q 013602 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN-------------------IMKL-PRN 391 (439)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~-------------------~~~~-~~~ 391 (439)
.+++.... ++|||++++++|+.|+++.+.+.+|.+..+. ..+. ...
T Consensus 238 ~~~~~~~~--------------~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (343)
T TIGR01472 238 LMLQQDKP--------------DDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRP 303 (343)
T ss_pred HHHhcCCC--------------ccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCC
Confidence 99875321 5899999999999999999999999654321 1111 134
Q ss_pred CCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHH
Q 013602 392 GDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429 (439)
Q Consensus 392 ~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~ 429 (439)
++.....+|.+|++++|||+|+++++|+|+++++||++
T Consensus 304 ~~~~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 304 TEVDLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred CccchhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 55666778999999999999999999999999999974
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=354.38 Aligned_cols=322 Identities=22% Similarity=0.288 Sum_probs=248.2
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChh-------------HHHHH-HHhhhcCCeEEEEccc
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS-------------LKKAR-QALLERSGIFIVEGDI 160 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~-------------~~~~~-~~~~~~~~v~~~~~Dl 160 (439)
...++|+||||||+||||++|+++|+++|++|++++|........ ..... .......+++++.+|+
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl 122 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI 122 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence 346789999999999999999999999999999998643211000 00000 0011124689999999
Q ss_pred CCHHHHHHhhcccCccEEEEcccccCccccccCh---hHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCC
Q 013602 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP---NSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 161 ~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~---~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~ 237 (439)
+|.+.+.+++++.++|+|||+|+.........++ ...+++|+.|+.+++++|++.+..++||++||..+||... .+
T Consensus 123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~~ 201 (442)
T PLN02572 123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-ID 201 (442)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-CC
Confidence 9999999999987889999999875444333333 4567899999999999999988645899999999999542 22
Q ss_pred CCC-----------CC--CCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC---------------
Q 013602 238 FSE-----------KD--RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD--------------- 289 (439)
Q Consensus 238 ~~e-----------~~--~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~--------------- 289 (439)
++| ++ .+..|.++|+.+|.++|.+++.+.+.+|++++++||++||||+....
T Consensus 202 ~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~ 281 (442)
T PLN02572 202 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGV 281 (442)
T ss_pred CcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccc
Confidence 222 22 13356789999999999999999988999999999999999986431
Q ss_pred --ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHH
Q 013602 290 --MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVS 367 (439)
Q Consensus 290 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~ 367 (439)
..+..++..+..|+++.++ +++++.++|+||+|+|++++.+++.....+ ...+||+++ +.+|+.
T Consensus 282 ~~~~i~~~~~~~~~g~~i~v~---g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g----------~~~i~Nigs-~~~si~ 347 (442)
T PLN02572 282 FGTALNRFCVQAAVGHPLTVY---GKGGQTRGFLDIRDTVRCIEIAIANPAKPG----------EFRVFNQFT-EQFSVN 347 (442)
T ss_pred hhhHHHHHHHHHhcCCCceec---CCCCEEECeEEHHHHHHHHHHHHhChhhcC----------ceeEEEeCC-CceeHH
Confidence 3455667777888888777 578899999999999999999987542110 125899976 679999
Q ss_pred HHHHHHHHH---hCCccccccccCC-CCCCCCcccCChHHHHHHcCCCccC---cHHHHHHHHHHHHHHHcc
Q 013602 368 DLVSILERL---LKVKAKRNIMKLP-RNGDVPFTHANISLAQRELGYKPTT---DLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 368 el~~~l~~~---~g~~~~~~~~~~~-~~~~~~~~~~d~~k~~~~LG~~p~~---~l~e~l~~~v~~~~~~~~ 432 (439)
|+++.+.+. +|.+..+...+.+ ...+.....+|.+|++ +|||+|++ ++++++.+++.||+++..
T Consensus 348 el~~~i~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LGw~p~~~~~~l~~~l~~~~~~~~~~~~ 418 (442)
T PLN02572 348 ELAKLVTKAGEKLGLDVEVISVPNPRVEAEEHYYNAKHTKLC-ELGLEPHLLSDSLLDSLLNFAVKYKDRVD 418 (442)
T ss_pred HHHHHHHHHHHhhCCCCCeeeCCCCcccccccccCccHHHHH-HcCCCCCCcHHHHHHHHHHHHHHHHhhcc
Confidence 999999999 8876665555433 2334446678999996 59999998 899999999999987654
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=346.68 Aligned_cols=314 Identities=25% Similarity=0.394 Sum_probs=247.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|+|||||||||||+++++.|+++|++|+++.+...... .... .........+.++.+|++|.+++.+++++.++|+|
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~V 78 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAG-NLMS-LAPVAQSERFAFEKVDICDRAELARVFTEHQPDCV 78 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCcccc-chhh-hhhcccCCceEEEECCCcChHHHHHHHhhcCCCEE
Confidence 368999999999999999999999987665443221111 0000 01111224688899999999999999998778999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhc--------CCCCeEEEecCCcccCCCC--CCCCCCCCCCCCCC
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA--------NPQPAIVWASSSSVYGLNT--KVPFSEKDRTDQPA 248 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~--------~~~~~~V~~SS~~v~g~~~--~~~~~e~~~~~~p~ 248 (439)
||+||........+++...+++|+.|+.+++++|++. ...++||++||.++||... ..++.|+.+. .|.
T Consensus 79 ih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~-~p~ 157 (355)
T PRK10217 79 MHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPY-APS 157 (355)
T ss_pred EECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCC-CCC
Confidence 9999986554455677899999999999999999863 1234999999999998543 3356666554 678
Q ss_pred ChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHH
Q 013602 249 SLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVK 328 (439)
Q Consensus 249 ~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~ 328 (439)
+.|+.||.++|.+++.++++++++++++||++||||+..+...+..++..+..+++++++ +++++.++|+|++|++.
T Consensus 158 s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~D~a~ 234 (355)
T PRK10217 158 SPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVY---GNGQQIRDWLYVEDHAR 234 (355)
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEe---CCCCeeeCcCcHHHHHH
Confidence 999999999999999998888999999999999999986666677777778888887776 57889999999999999
Q ss_pred HHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccc------------ccccCCCCCCCCc
Q 013602 329 GCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR------------NIMKLPRNGDVPF 396 (439)
Q Consensus 329 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~------------~~~~~~~~~~~~~ 396 (439)
++..+++... .+++|||++++++|+.|+++.+.+.++...+. ...+ ........
T Consensus 235 a~~~~~~~~~-------------~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 300 (355)
T PRK10217 235 ALYCVATTGK-------------VGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVA-DRPGHDLR 300 (355)
T ss_pred HHHHHHhcCC-------------CCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecC-CCCCCCcc
Confidence 9999987532 12799999999999999999999998853211 0111 12233455
Q ss_pred ccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 397 THANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 397 ~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
+.+|++|++++|||+|.++++|+|+++++||..+.+
T Consensus 301 ~~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 301 YAIDASKIARELGWLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred cccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHhCHH
Confidence 678999999999999999999999999999988743
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=342.80 Aligned_cols=319 Identities=21% Similarity=0.238 Sum_probs=253.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCCh-hHHHHHH-HhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDP-SLKKARQ-ALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~-~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
.++|+||||||+||||++++++|+++|++|++++|....... ....... ......++.++.+|++|.+++.++++..+
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence 567899999999999999999999999999999985542211 1111100 00112468899999999999999999888
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCC----CeEEEecCCcccCCCCCCCCCCCCCCCCCCCh
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ----PAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 250 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~----~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~ 250 (439)
+|+|||+||.........++...+++|+.|+.++++++++.+.. .+||++||.++||.... ++.|+++. .|.+.
T Consensus 84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~~~~-~p~~~ 161 (340)
T PLN02653 84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSETTPF-HPRSP 161 (340)
T ss_pred CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCCCCC-CCCCh
Confidence 89999999986555455677788899999999999999988753 28999999999997654 67777655 68899
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCC---hHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHH
Q 013602 251 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDM---AYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327 (439)
Q Consensus 251 Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva 327 (439)
|+.||+++|.+++.+++++++.+...|+.++|||+..... .+..++..+..+....++. +++++.++|+|++|+|
T Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~g~~~rd~i~v~D~a 239 (340)
T PLN02653 162 YAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFL--GNLDASRDWGFAGDYV 239 (340)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEe--CCCcceecceeHHHHH
Confidence 9999999999999999888999899999999999755332 2334455666777665542 5788999999999999
Q ss_pred HHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCc--cccccccC-CCCCCCCcccCChHHH
Q 013602 328 KGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVK--AKRNIMKL-PRNGDVPFTHANISLA 404 (439)
Q Consensus 328 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~--~~~~~~~~-~~~~~~~~~~~d~~k~ 404 (439)
++++.+++... ++.|||++++++|+.|+++.+.+.+|.+ ..+...+. ....+.....+|++|+
T Consensus 240 ~a~~~~~~~~~--------------~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 305 (340)
T PLN02653 240 EAMWLMLQQEK--------------PDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKA 305 (340)
T ss_pred HHHHHHHhcCC--------------CCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHH
Confidence 99999988532 1579999999999999999999999864 22222221 2345556667899999
Q ss_pred HHHcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 405 QRELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 405 ~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
+++|||+|+++++|||+++++||++....
T Consensus 306 ~~~lgw~p~~~l~~gi~~~~~~~~~~~~~ 334 (340)
T PLN02653 306 REVLGWKPKVGFEQLVKMMVDEDLELAKR 334 (340)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999876553
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=341.65 Aligned_cols=321 Identities=23% Similarity=0.253 Sum_probs=254.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+++|+||||||+||||+++++.|+++|++|++++|+........ ........+.++.+|++|.+++.+++++.++|
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 77 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLF----ELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPE 77 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHH----HHHhhcCCceEEEccCCCHHHHHHHHhhcCCC
Confidence 35789999999999999999999999999999998654321111 11111236788999999999999999988889
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC-CCCCCCCCCCCCCChHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTK-VPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~-~~~~e~~~~~~p~~~Y~~sK 255 (439)
+|||+||......+.+++...+++|+.++.++++++++.+..++||++||..+||.... .++.|+++. .|.+.|+.+|
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~-~p~~~Y~~sK 156 (349)
T TIGR02622 78 IVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPL-GGHDPYSSSK 156 (349)
T ss_pred EEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCC-CCCCcchhHH
Confidence 99999997555555677889999999999999999988763459999999999986432 345665544 6788999999
Q ss_pred HHHHHHHHHHHhHh-------CCcEEEEeeccccCCCCC-CCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHH
Q 013602 256 KAGEEIAHTYNHIY-------GLSLTGLRFFTVYGPWGR-PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327 (439)
Q Consensus 256 ~a~E~~~~~~~~~~-------gi~~~ilrpg~v~G~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva 327 (439)
.++|.+++.+++++ +++++++||++||||++. ....++.++..+..|+.+.+ +++.+.++|+|++|+|
T Consensus 157 ~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~----~~g~~~rd~i~v~D~a 232 (349)
T TIGR02622 157 ACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVII----RNPDATRPWQHVLEPL 232 (349)
T ss_pred HHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEE----CCCCcccceeeHHHHH
Confidence 99999999988765 899999999999999753 23567788888888887766 3678999999999999
Q ss_pred HHHHHHHhhchhccCCCCCccCCCCCcEEEecCC--CcccHHHHHHHHHHHhCC-ccccccccC-CCCCCCCcccCChHH
Q 013602 328 KGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT--SPVPVSDLVSILERLLKV-KAKRNIMKL-PRNGDVPFTHANISL 403 (439)
Q Consensus 328 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~t~~el~~~l~~~~g~-~~~~~~~~~-~~~~~~~~~~~d~~k 403 (439)
.+++.+++...... ...+++|||+++ +++++.|+++.+.+.++. +..+...+. ....+.....+|.+|
T Consensus 233 ~a~~~~~~~~~~~~--------~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 304 (349)
T TIGR02622 233 SGYLLLAEKLFTGQ--------AEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSK 304 (349)
T ss_pred HHHHHHHHHHhhcC--------ccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHH
Confidence 99998887532110 012379999974 689999999999987763 223222111 223445567789999
Q ss_pred HHHHcCCCccCcHHHHHHHHHHHHHHHccCC
Q 013602 404 AQRELGYKPTTDLQTGLKKFVRWYLSYYAGG 434 (439)
Q Consensus 404 ~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 434 (439)
++++|||+|+++++++|+++++|+.++.+.+
T Consensus 305 ~~~~lgw~p~~~l~~gi~~~i~w~~~~~~~~ 335 (349)
T TIGR02622 305 ARTLLGWHPRWGLEEAVSRTVDWYKAWLRGE 335 (349)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999987654
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=345.26 Aligned_cols=313 Identities=22% Similarity=0.327 Sum_probs=240.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHh---hhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQAL---LERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
.+.|+|||||||||||++|+++|+++ |++|++++|+.... . ..... ....+++++.+|++|.+.+.+++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~----~-~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 86 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKI----K-HLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKM 86 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhh----h-hhhccccccCCCCeEEEEcCCCChHHHHHHhhc
Confidence 45578999999999999999999998 59999999843211 0 00000 0124699999999999999999987
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC--------
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT-------- 244 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~-------- 244 (439)
+ |+|||+|+.........++...+..|+.++.+++++|++.+ . +||++||.++||.....+..|+.+.
T Consensus 87 ~--d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~-r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~ 162 (386)
T PLN02427 87 A--DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-K-RLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYV 162 (386)
T ss_pred C--CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-C-EEEEEeeeeeeCCCcCCCCCccccccccccccc
Confidence 6 99999999755433345566778899999999999999876 3 9999999999996543333332211
Q ss_pred -------------CCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC-----------CChHHHHHHHHH
Q 013602 245 -------------DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP-----------DMAYFFFTRDIL 300 (439)
Q Consensus 245 -------------~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~-----------~~~~~~~~~~~~ 300 (439)
..+.+.|+.+|.++|.++..+.+.+|++++++||++||||+... ...+..++..++
T Consensus 163 ~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~ 242 (386)
T PLN02427 163 LKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL 242 (386)
T ss_pred ccccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHh
Confidence 02346799999999999999888789999999999999997531 123445667777
Q ss_pred cCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC-CcccHHHHHHHHHHHhCC
Q 013602 301 NRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT-SPVPVSDLVSILERLLKV 379 (439)
Q Consensus 301 ~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~t~~el~~~l~~~~g~ 379 (439)
+++++.++ +++.+.++|+||+|+|++++.+++..... .+++||++++ +++|+.|+++.+.+.+|.
T Consensus 243 ~~~~~~~~---g~g~~~r~~i~V~Dva~ai~~al~~~~~~-----------~g~~yni~~~~~~~s~~el~~~i~~~~g~ 308 (386)
T PLN02427 243 RREPLKLV---DGGQSQRTFVYIKDAIEAVLLMIENPARA-----------NGHIFNVGNPNNEVTVRQLAEMMTEVYAK 308 (386)
T ss_pred cCCCeEEE---CCCCceECcEeHHHHHHHHHHHHhCcccc-----------cCceEEeCCCCCCccHHHHHHHHHHHhcc
Confidence 88887776 56788899999999999999998764311 2379999997 599999999999999984
Q ss_pred cccc-----c--cccC-----CCCCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 380 KAKR-----N--IMKL-----PRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 380 ~~~~-----~--~~~~-----~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
.... . ..+. +...+......|.+|++++|||+|+++++++|+++++|+++.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~~ 373 (386)
T PLN02427 309 VSGEPALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTYA 373 (386)
T ss_pred ccccccccccccccCcccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHHH
Confidence 2111 1 0110 11134455678999999999999999999999999999988764
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=313.62 Aligned_cols=307 Identities=24% Similarity=0.422 Sum_probs=264.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+++|+||||.||||+||+..|..+||.|++++...+..... .......+.++.+.-|+..+ ++.++ |
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n----~~~~~~~~~fel~~hdv~~p-----l~~ev--D 93 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKEN----LEHWIGHPNFELIRHDVVEP-----LLKEV--D 93 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhh----cchhccCcceeEEEeechhH-----HHHHh--h
Confidence 4568999999999999999999999999999999855432211 12223446677777777654 77777 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC----CCCCCChHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR----TDQPASLYA 252 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~----~~~p~~~Y~ 252 (439)
.|+|+|+.+++.....++..++.+|+.||.+++-.|++.+. ||++.||+.|||+....|..|+.+ +..|.+.|.
T Consensus 94 ~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~a--R~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cyd 171 (350)
T KOG1429|consen 94 QIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYD 171 (350)
T ss_pred hhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhCc--eEEEeecccccCCcccCCCccccccccCcCCchhhhh
Confidence 99999999988888899999999999999999999999984 999999999999988777777654 345778999
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC--CCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 253 ATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR--PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 253 ~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
..|..+|.++..+.++.|+.+.|.|+.+.|||... +......|..+.++++++.+| |+|.++|+|.||+|+++++
T Consensus 172 egKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~---g~G~qtRSF~yvsD~Vegl 248 (350)
T KOG1429|consen 172 EGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVY---GDGKQTRSFQYVSDLVEGL 248 (350)
T ss_pred HHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEE---cCCcceEEEEeHHHHHHHH
Confidence 99999999999999999999999999999999864 456788999999999999999 7999999999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCC
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGY 410 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~ 410 (439)
+++++.+.. +.+||++++.+|+.||++++.++.+....+.+.. +..++.....-|++++++.|||
T Consensus 249 l~Lm~s~~~--------------~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~-~~~Ddp~kR~pDit~ake~LgW 313 (350)
T KOG1429|consen 249 LRLMESDYR--------------GPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVE-NGPDDPRKRKPDITKAKEQLGW 313 (350)
T ss_pred HHHhcCCCc--------------CCcccCCccceeHHHHHHHHHHHcCCCcceeecC-CCCCCccccCccHHHHHHHhCC
Confidence 999998775 5699999999999999999999997665555443 4556666677899999999999
Q ss_pred CccCcHHHHHHHHHHHHHHHccCC
Q 013602 411 KPTTDLQTGLKKFVRWYLSYYAGG 434 (439)
Q Consensus 411 ~p~~~l~e~l~~~v~~~~~~~~~~ 434 (439)
.|+++|+|||..++.|+++.+...
T Consensus 314 ~Pkv~L~egL~~t~~~fr~~i~~~ 337 (350)
T KOG1429|consen 314 EPKVSLREGLPLTVTYFRERIARE 337 (350)
T ss_pred CCCCcHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999987543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=335.28 Aligned_cols=309 Identities=22% Similarity=0.353 Sum_probs=244.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC-CHHHHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN-DMALLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~~~~~~~~~~~d 176 (439)
+|+||||||+||||++|+++|+++ |++|++++|... . ........+++++.+|++ +.+.+.++++++ |
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~-------~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--d 70 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD-------R-LGDLVNHPRMHFFEGDITINKEWIEYHVKKC--D 70 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH-------H-HHHhccCCCeEEEeCCCCCCHHHHHHHHcCC--C
Confidence 368999999999999999999986 699999998221 1 111222357999999998 778888888865 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC------CCCCCh
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT------DQPASL 250 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~------~~p~~~ 250 (439)
+|||+|+.........++...+++|+.++.+++++|++.+ . +||++||..+||.....++.|++.+ ..|.+.
T Consensus 71 ~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~-~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~ 148 (347)
T PRK11908 71 VILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWI 148 (347)
T ss_pred EEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-C-eEEEEecceeeccCCCcCcCccccccccCcCCCccch
Confidence 9999999765544567788899999999999999999887 4 9999999999997655566666532 135568
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC--------CChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 251 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP--------DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 251 Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
|+.+|.++|..++.+..+++++++++||++||||+..+ ...+..++..+..++++.++ +++++.++|+|
T Consensus 149 Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~g~~~r~~i~ 225 (347)
T PRK11908 149 YACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLV---DGGSQKRAFTD 225 (347)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEe---cCCceeecccc
Confidence 99999999999999988889999999999999997532 23566777788888887765 56789999999
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC-CcccHHHHHHHHHHHhCCccccc-------cccCC-----
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT-SPVPVSDLVSILERLLKVKAKRN-------IMKLP----- 389 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~t~~el~~~l~~~~g~~~~~~-------~~~~~----- 389 (439)
++|++++++.+++.+... ..+++|||+++ ..+|+.|+++.|.+.++....+. ....+
T Consensus 226 v~D~a~a~~~~~~~~~~~----------~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (347)
T PRK11908 226 IDDGIDALMKIIENKDGV----------ASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYY 295 (347)
T ss_pred HHHHHHHHHHHHhCcccc----------CCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhcc
Confidence 999999999998864310 12389999986 57999999999999998543321 11111
Q ss_pred --CCCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 390 --RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 390 --~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
...+......|.+|+++.|||+|+++++++|+++++|++++..
T Consensus 296 ~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~~ 340 (347)
T PRK11908 296 GKGYQDVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHVA 340 (347)
T ss_pred CcCcchhccccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1122334557899999999999999999999999999987754
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=313.06 Aligned_cols=312 Identities=27% Similarity=0.419 Sum_probs=260.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
++|+||||.||||++.+..+...= ++.+.++--. .... .....+....++..++++|+.|...+..++...++|.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~--~~s~-~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~ 83 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLD--YCSN-LKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDT 83 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecc--cccc-cchhhhhccCCCceEeeccccchHHHHhhhccCchhh
Confidence 799999999999999999998763 4444443211 1111 1112233356899999999999999999999989999
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a 257 (439)
|+|.|+...+..+-.++-...+.|+.+|..|+++++..+..++||++||..|||+........+.....|.++|+++|+|
T Consensus 84 vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPtnpyAasKaA 163 (331)
T KOG0747|consen 84 VIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPTNPYAASKAA 163 (331)
T ss_pred hhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccCCCCCchHHHHHH
Confidence 99999998887777788889999999999999999999877899999999999999888777344344899999999999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
+|++++++.+.+|++++++|.++||||++.+...++.|+.....+++.+.. |+|.+.++|+|++|+++++..+++..
T Consensus 164 aE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~---g~g~~~rs~l~veD~~ea~~~v~~Kg 240 (331)
T KOG0747|consen 164 AEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIH---GDGLQTRSYLYVEDVSEAFKAVLEKG 240 (331)
T ss_pred HHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCccee---cCcccceeeEeHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999889999999988899999887 79999999999999999999998763
Q ss_pred hhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccc-ccccc-----CCCCCCCCcccCChHHHHHHcCCC
Q 013602 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK-RNIMK-----LPRNGDVPFTHANISLAQRELGYK 411 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-~~~~~-----~~~~~~~~~~~~d~~k~~~~LG~~ 411 (439)
. .|++|||+++.+.+..|+++.+.+++....+ ....| ..++-....+.++.+|++ .|||+
T Consensus 241 ~-------------~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik-~LGw~ 306 (331)
T KOG0747|consen 241 E-------------LGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIK-KLGWR 306 (331)
T ss_pred C-------------ccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHH-hcCCc
Confidence 3 2389999999999999999999999875322 11111 112222333678999998 99999
Q ss_pred ccCcHHHHHHHHHHHHHHHc
Q 013602 412 PTTDLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 412 p~~~l~e~l~~~v~~~~~~~ 431 (439)
|++++++||+++++||.++.
T Consensus 307 ~~~p~~eGLrktie~y~~~~ 326 (331)
T KOG0747|consen 307 PTTPWEEGLRKTIEWYTKNF 326 (331)
T ss_pred ccCcHHHHHHHHHHHHHhhh
Confidence 99999999999999999887
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=326.16 Aligned_cols=311 Identities=26% Similarity=0.429 Sum_probs=249.4
Q ss_pred EEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+||||||||+||++++++|+++| ++|++++|........ .........+++++.+|++|++++.++++..++|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLE---NLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhh---hhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 48999999999999999999987 7899887643211110 011111234788999999999999999998677999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC-CCCCCCCCCCCCChHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKV-PFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~-~~~e~~~~~~p~~~Y~~sK~a 257 (439)
||+|+........++++..+++|+.++.+++++|++.+...++|++||.++||..... ++.|.++. .|.+.|+.+|.+
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~-~~~~~Y~~sK~~ 156 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPL-APSSPYSASKAA 156 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCC-CCCCchHHHHHH
Confidence 9999976555555677889999999999999999987544489999999999965443 46666554 677899999999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
+|.+++.+.++.+++++++||+.+|||+..+...+..++..+..++.++++ ++++..++|+|++|+++++..+++..
T Consensus 157 ~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~D~a~~~~~~~~~~ 233 (317)
T TIGR01181 157 SDHLVRAYHRTYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVY---GDGQQVRDWLYVEDHCRAIYLVLEKG 233 (317)
T ss_pred HHHHHHHHHHHhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEe---CCCceEEeeEEHHHHHHHHHHHHcCC
Confidence 999999998888999999999999999876666777788888888887776 57788999999999999999998753
Q ss_pred hhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCccCcHH
Q 013602 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQ 417 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~ 417 (439)
. .+++||+++++++++.|+++.+.+.+|.+..................+|++|++++|||+|+++++
T Consensus 234 ~-------------~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~ 300 (317)
T TIGR01181 234 R-------------VGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFE 300 (317)
T ss_pred C-------------CCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHH
Confidence 2 127999999999999999999999999643321111112223334468999999999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 013602 418 TGLKKFVRWYLSYY 431 (439)
Q Consensus 418 e~l~~~v~~~~~~~ 431 (439)
++++++++||+++.
T Consensus 301 ~~i~~~~~~~~~~~ 314 (317)
T TIGR01181 301 EGLRKTVQWYLDNE 314 (317)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999997763
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=330.76 Aligned_cols=313 Identities=26% Similarity=0.425 Sum_probs=243.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
|+||||||+||||++++++|+++|+. |+++++...... ... .........+.++.+|++|.+++.+++++.++|+|
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGN--LES-LADVSDSERYVFEHADICDRAELDRIFAQHQPDAV 77 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccch--HHH-HHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEE
Confidence 47999999999999999999999976 555554221111 111 11111124678899999999999999988778999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhc--------CCCCeEEEecCCcccCCCCC----------CCCCC
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA--------NPQPAIVWASSSSVYGLNTK----------VPFSE 240 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~--------~~~~~~V~~SS~~v~g~~~~----------~~~~e 240 (439)
||+||.........+++..+++|+.|+.+++++|++. +..++||++||.++||.... .++.|
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E 157 (352)
T PRK10084 78 MHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTE 157 (352)
T ss_pred EECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccc
Confidence 9999975444444567889999999999999999874 12348999999999985321 13455
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
+++. .|.+.|+.+|.++|.+++.+++++|++++++||++||||+..+...+..++..+..+..+.++ +++++.++|
T Consensus 158 ~~~~-~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~ 233 (352)
T PRK10084 158 TTAY-APSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDW 233 (352)
T ss_pred cCCC-CCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEe---CCCCeEEee
Confidence 5544 678899999999999999998888999999999999999875555666777777778777776 578899999
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccc--cc-----cCCCCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN--IM-----KLPRNGD 393 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~--~~-----~~~~~~~ 393 (439)
+|++|+|++++.+++... .+++||+++++++++.|+++.+.+.+|...+.. +. ......+
T Consensus 234 v~v~D~a~a~~~~l~~~~-------------~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~ 300 (352)
T PRK10084 234 LYVEDHARALYKVVTEGK-------------AGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGH 300 (352)
T ss_pred EEHHHHHHHHHHHHhcCC-------------CCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCC
Confidence 999999999998887432 127999999999999999999999998532211 00 0112233
Q ss_pred CCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 394 VPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 394 ~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
.....+|++|++++|||+|+++++++|+++++||+++..
T Consensus 301 ~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 339 (352)
T PRK10084 301 DRRYAIDASKISRELGWKPQETFESGIRKTVEWYLANTE 339 (352)
T ss_pred CceeeeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhCHH
Confidence 445678999999999999999999999999999988643
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=327.96 Aligned_cols=326 Identities=25% Similarity=0.382 Sum_probs=249.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+.+|+|||||||||||++++++|+++|++|++++|................ ....++.++.+|++|.+.+.++++..++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 567899999999999999999999999999999874332111111111110 0124688999999999999999987778
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK 255 (439)
|+|||+||.........++...+++|+.++.+++++|++.+.. +||++||.++||.....+++|+.+. .|.+.|+.+|
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~vyg~~~~~~~~E~~~~-~~~~~Y~~sK 160 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSSSATVYGQPEEVPCTEEFPL-SATNPYGRTK 160 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCCCCCCCCCCCC-CCCCHHHHHH
Confidence 9999999975444445677889999999999999999988754 9999999999987666677787665 6788999999
Q ss_pred HHHHHHHHHHHhH-hCCcEEEEeeccccCCCCC------CCC---hHHHHHHHHHcCC--CCceeec---CCCCcceeee
Q 013602 256 KAGEEIAHTYNHI-YGLSLTGLRFFTVYGPWGR------PDM---AYFFFTRDILNRK--SIPIFES---PDHGTVARDF 320 (439)
Q Consensus 256 ~a~E~~~~~~~~~-~gi~~~ilrpg~v~G~~~~------~~~---~~~~~~~~~~~g~--~~~~~~~---~~~~~~~~~~ 320 (439)
.++|.+++.+.+. .+++++++|++++||++.. +.. .+..++..+..++ .+..+.. .+++.+.++|
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 240 (352)
T PLN02240 161 LFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDY 240 (352)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEee
Confidence 9999999988754 5799999999999997421 111 1223344455443 2333320 1267899999
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHAN 400 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d 400 (439)
+|++|+|++++.+++...... ...+++||+++++++|+.|+++.+.+.+|.+.++...+. ...+......|
T Consensus 241 i~v~D~a~a~~~a~~~~~~~~--------~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d 311 (352)
T PLN02240 241 IHVMDLADGHIAALRKLFTDP--------DIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPR-RPGDAEEVYAS 311 (352)
T ss_pred EEHHHHHHHHHHHHhhhhhcc--------CCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCC-CCCChhhhhcC
Confidence 999999999999887542111 123379999999999999999999999997766554432 33344455679
Q ss_pred hHHHHHHcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 401 ISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 401 ~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
++|++++|||+|+++++|+|+++++|++++...
T Consensus 312 ~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~~ 344 (352)
T PLN02240 312 TEKAEKELGWKAKYGIDEMCRDQWNWASKNPYG 344 (352)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999988643
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=356.89 Aligned_cols=315 Identities=23% Similarity=0.348 Sum_probs=250.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHH-HHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMAL-LKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-~~~~~~~~~ 174 (439)
..+|+|||||||||||++|+++|+++ |++|++++|.... ........+++++.+|++|.+. ++++++++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~--------~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~- 383 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDA--------ISRFLGHPRFHFVEGDISIHSEWIEYHIKKC- 383 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchh--------hhhhcCCCceEEEeccccCcHHHHHHHhcCC-
Confidence 56789999999999999999999986 7999999984321 1112223578999999998665 57778765
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC------CCCC
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT------DQPA 248 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~------~~p~ 248 (439)
|+|||+||.........++...+++|+.++.+++++|++.+ . +||++||.++||.....+++|+++. ..|.
T Consensus 384 -D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~ 460 (660)
T PRK08125 384 -DVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQR 460 (660)
T ss_pred -CEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchhhcCCCCCCCcCccccccccCCCCCCc
Confidence 99999999866555556778899999999999999999987 3 9999999999997655567776542 1245
Q ss_pred ChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC--------CChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 249 SLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP--------DMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 249 ~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
+.|+.+|+++|.+++.+.+.+|++++++||++||||+... ...+..++..+..++++.++ +++.+.++|
T Consensus 461 s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~---g~g~~~rd~ 537 (660)
T PRK08125 461 WIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLV---DGGKQKRCF 537 (660)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEe---CCCceeece
Confidence 6899999999999999988889999999999999997532 24567788888888887766 578899999
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC-cccHHHHHHHHHHHhCCccccccccCCC---------
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS-PVPVSDLVSILERLLKVKAKRNIMKLPR--------- 390 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~t~~el~~~l~~~~g~~~~~~~~~~~~--------- 390 (439)
+|++|+|++++.+++..... ..+++|||++++ .+|+.|+++.+.+.+|.+......+...
T Consensus 538 i~v~Dva~a~~~~l~~~~~~----------~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 607 (660)
T PRK08125 538 TDIRDGIEALFRIIENKDNR----------CDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSS 607 (660)
T ss_pred eeHHHHHHHHHHHHhccccc----------cCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCcccccccccccc
Confidence 99999999999998764211 123899999985 7999999999999998542211111110
Q ss_pred -----CCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHccCCCC
Q 013602 391 -----NGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGGKK 436 (439)
Q Consensus 391 -----~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~~~ 436 (439)
..+.....+|.+|++++|||+|.++++|+|+++++||+++.+--.+
T Consensus 608 ~~~~~~~~~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~~~~ 658 (660)
T PRK08125 608 YYGKGYQDVEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVDLTEK 658 (660)
T ss_pred ccccccccccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhccccccc
Confidence 1233445689999999999999999999999999999998775443
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=331.83 Aligned_cols=305 Identities=24% Similarity=0.355 Sum_probs=242.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+|+|||||||||||++++++|.++|++|++++|..... .......++++.+|++|.+.+.++++++ |+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~---------~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--D~ 88 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEH---------MSEDMFCHEFHLVDLRVMENCLKVTKGV--DH 88 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccc---------cccccccceEEECCCCCHHHHHHHHhCC--CE
Confidence 568999999999999999999999999999999843210 0001123678899999999999988876 99
Q ss_pred EEEcccccCc-cccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC----CCCCCCCC-CCCCCChH
Q 013602 178 VMHLAAQAGV-RYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTK----VPFSEKDR-TDQPASLY 251 (439)
Q Consensus 178 Vi~~Ag~~~~-~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~----~~~~e~~~-~~~p~~~Y 251 (439)
|||+|+.... .....++...+..|+.++.+++++|++.+.+ +||++||.++||.... .++.|++. +..|.+.|
T Consensus 89 Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk-~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Y 167 (370)
T PLN02695 89 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAY 167 (370)
T ss_pred EEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC-EEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHH
Confidence 9999986532 2223455667889999999999999998854 9999999999996532 13555542 44678999
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC----CChHHHHHHHHHc-CCCCceeecCCCCcceeeeeeHHHH
Q 013602 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP----DMAYFFFTRDILN-RKSIPIFESPDHGTVARDFTYIDDI 326 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~----~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~i~v~Dv 326 (439)
+.+|.++|.+++.+.+.+|++++++||++||||+... ......++..++. +..+.++ +++++.++|+|++|+
T Consensus 168 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---g~g~~~r~~i~v~D~ 244 (370)
T PLN02695 168 GLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMW---GDGKQTRSFTFIDEC 244 (370)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEe---CCCCeEEeEEeHHHH
Confidence 9999999999999988889999999999999997642 2234566666665 4566666 578999999999999
Q ss_pred HHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHH
Q 013602 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQR 406 (439)
Q Consensus 327 a~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 406 (439)
+++++.+++... +++||+++++++|+.|+++.+.+..|.+.++...+.+. ......+|++|+++
T Consensus 245 a~ai~~~~~~~~--------------~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~--~~~~~~~d~sk~~~ 308 (370)
T PLN02695 245 VEGVLRLTKSDF--------------REPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPE--GVRGRNSDNTLIKE 308 (370)
T ss_pred HHHHHHHHhccC--------------CCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCCC--CccccccCHHHHHH
Confidence 999999876532 16899999999999999999999999766655444322 22345689999999
Q ss_pred HcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 407 ELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 407 ~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
+|||+|+++++++|+++++|++++...
T Consensus 309 ~lgw~p~~~l~e~i~~~~~~~~~~~~~ 335 (370)
T PLN02695 309 KLGWAPTMRLKDGLRITYFWIKEQIEK 335 (370)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987653
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=320.25 Aligned_cols=307 Identities=16% Similarity=0.158 Sum_probs=229.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+|+||||||+||||++++++|+++|++|++++|+....... ...........+++++.+|++|.+++.++++++ |+
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~--d~ 80 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKT-DHLLALDGAKERLKLFKADLLDEGSFELAIDGC--ET 80 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhH-HHHHhccCCCCceEEEeCCCCCchHHHHHHcCC--CE
Confidence 468999999999999999999999999999998865432111 000000011246889999999999999999876 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-----CCCCCCCCCCCC-----C
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT-----KVPFSEKDRTDQ-----P 247 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~-----~~~~~e~~~~~~-----p 247 (439)
||||||........+++...+++|+.|+.+++++|.+....++||++||.++|+... ..+++|+.+... +
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~ 160 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEER 160 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccc
Confidence 999999754433445567889999999999999998864334999999988765432 234566655421 2
Q ss_pred CChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC-ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD-MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDI 326 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dv 326 (439)
.+.|+.+|+++|.+++.+.+++|++++++||++||||+..+. .....++..++.++.. . + ...++|+|++|+
T Consensus 161 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~-~----~--~~~r~~i~v~Dv 233 (325)
T PLN02989 161 KQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNP-F----N--TTHHRFVDVRDV 233 (325)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCC-C----C--CcCcCeeEHHHH
Confidence 468999999999999999888899999999999999987653 2333455556666543 1 1 245789999999
Q ss_pred HHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccC-CCCCCCCcccCChHHHH
Q 013602 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL-PRNGDVPFTHANISLAQ 405 (439)
Q Consensus 327 a~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~k~~ 405 (439)
|++++.+++.+.. +++||++ ++.+|+.|+++.+.+.++.. .+...+. ....+......|.+|++
T Consensus 234 a~a~~~~l~~~~~-------------~~~~ni~-~~~~s~~ei~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~ 298 (325)
T PLN02989 234 ALAHVKALETPSA-------------NGRYIID-GPVVTIKDIENVLREFFPDL-CIADRNEDITELNSVTFNVCLDKVK 298 (325)
T ss_pred HHHHHHHhcCccc-------------CceEEEe-cCCCCHHHHHHHHHHHCCCC-CCCCCCCCcccccccCcCCCHHHHH
Confidence 9999999876432 1589995 56899999999999999742 1111000 01112234578899987
Q ss_pred HHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 406 RELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 406 ~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
+ |||.|.++++|+|+++++||++.
T Consensus 299 ~-lg~~p~~~l~~gi~~~~~~~~~~ 322 (325)
T PLN02989 299 S-LGIIEFTPTETSLRDTVLSLKEK 322 (325)
T ss_pred H-cCCCCCCCHHHHHHHHHHHHHHh
Confidence 5 99999999999999999999754
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=320.28 Aligned_cols=318 Identities=27% Similarity=0.440 Sum_probs=244.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+||||||+||||++++++|+++|++|++++|......... .........++.++.+|++|.+++.++++..++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVL--PVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHH--HHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 57999999999999999999999999999987433211111 0111112345788999999999999999876789999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+||.........++...+++|+.++.++++++++.+.. +||++||.++||.....+++|+++...|.+.|+.+|.++|
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 157 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHH
Confidence 999975443334566788999999999999999998854 9999999999997666677787765467899999999999
Q ss_pred HHHHHHHhHh-CCcEEEEeeccccCCCC------CC----CChHHHHHHHHHcCCC--Cceeec--C-CCCcceeeeeeH
Q 013602 260 EIAHTYNHIY-GLSLTGLRFFTVYGPWG------RP----DMAYFFFTRDILNRKS--IPIFES--P-DHGTVARDFTYI 323 (439)
Q Consensus 260 ~~~~~~~~~~-gi~~~ilrpg~v~G~~~------~~----~~~~~~~~~~~~~g~~--~~~~~~--~-~~~~~~~~~i~v 323 (439)
.++++++++. +++++++|++++|||.. +. ..++ .++..+..+.. +.++.. + .++.+.++|+|+
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v 236 (338)
T PRK10675 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLM-PYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236 (338)
T ss_pred HHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHH-HHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEH
Confidence 9999998764 89999999999999741 11 1122 23344444332 333310 0 256788999999
Q ss_pred HHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHH
Q 013602 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISL 403 (439)
Q Consensus 324 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 403 (439)
+|+|++++.+++..... ..+++||+++++++|+.|+++.+.+.+|.+.++...+ ....+.....+|++|
T Consensus 237 ~D~a~~~~~~~~~~~~~----------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~~~~k 305 (338)
T PRK10675 237 MDLADGHVAAMEKLANK----------PGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAP-RREGDLPAYWADASK 305 (338)
T ss_pred HHHHHHHHHHHHhhhcc----------CCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCC-CCCCchhhhhcCHHH
Confidence 99999999998753211 1237999999999999999999999999876654433 233344556789999
Q ss_pred HHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 404 AQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 404 ~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
+++.|||+|+++++++|+++++|+.++..
T Consensus 306 ~~~~lg~~p~~~~~~~~~~~~~~~~~~~~ 334 (338)
T PRK10675 306 ADRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_pred HHHHhCCCCcCcHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999988754
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=350.15 Aligned_cols=313 Identities=27% Similarity=0.406 Sum_probs=249.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhC--CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRR--GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
.++|+|||||||||||++++++|+++ |++|++++|.... ..... ........+++++.+|++|.+.+.+++...+
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~--~~~~~-l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 80 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYC--SNLKN-LNPSKSSPNFKFVKGDIASADLVNYLLITEG 80 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCcc--chhhh-hhhcccCCCeEEEECCCCChHHHHHHHhhcC
Confidence 35689999999999999999999998 6899999873210 01110 0111123579999999999999988876557
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCC---CCCCCCCCCCCChH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVP---FSEKDRTDQPASLY 251 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~---~~e~~~~~~p~~~Y 251 (439)
+|+|||+|+.........++...+++|+.||.+++++|++.+..++||++||..+||.....+ ..|+++. .|.+.|
T Consensus 81 ~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~-~p~~~Y 159 (668)
T PLN02260 81 IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQL-LPTNPY 159 (668)
T ss_pred CCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCC-CCCCCc
Confidence 799999999866554445667889999999999999999987445999999999999765432 2344443 577899
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHH
Q 013602 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 331 (439)
+.+|.++|.+++.+.++++++++++||++||||++.+...+..++..+..++.++++ +++.+.++|+|++|+|++++
T Consensus 160 ~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~---g~g~~~r~~ihV~Dva~a~~ 236 (668)
T PLN02260 160 SATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIH---GDGSNVRSYLYCEDVAEAFE 236 (668)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEe---cCCCceEeeEEHHHHHHHHH
Confidence 999999999999998888999999999999999887666777788888888888776 57889999999999999999
Q ss_pred HHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccc--ccccCCCCCCCCcccCChHHHHHHcC
Q 013602 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR--NIMKLPRNGDVPFTHANISLAQRELG 409 (439)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~d~~k~~~~LG 409 (439)
.+++... .+++||+++++++++.|+++.+.+.+|.+... ...+. +........+|++|++ +||
T Consensus 237 ~~l~~~~-------------~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~-~p~~~~~~~~d~~k~~-~lG 301 (668)
T PLN02260 237 VVLHKGE-------------VGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVEN-RPFNDQRYFLDDQKLK-KLG 301 (668)
T ss_pred HHHhcCC-------------CCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCC-CCCCcceeecCHHHHH-HcC
Confidence 9886432 12799999999999999999999999975432 11111 2222334558999996 699
Q ss_pred CCccCcHHHHHHHHHHHHHHHc
Q 013602 410 YKPTTDLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 410 ~~p~~~l~e~l~~~v~~~~~~~ 431 (439)
|+|+++++|+|+++++||+++-
T Consensus 302 w~p~~~~~egl~~~i~w~~~~~ 323 (668)
T PLN02260 302 WQERTSWEEGLKKTMEWYTSNP 323 (668)
T ss_pred CCCCCCHHHHHHHHHHHHHhCh
Confidence 9999999999999999998764
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=317.27 Aligned_cols=299 Identities=19% Similarity=0.243 Sum_probs=227.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.++|+||||||+||||++++++|+++|++|++++|+.+.... ....... ...++.++.+|++|.+++.++++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 82 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKN---THLRELEGGKERLILCKADLQDYEALKAAIDGC-- 82 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhH---HHHHHhhCCCCcEEEEecCcCChHHHHHHHhcC--
Confidence 467899999999999999999999999999999995432111 0011111 1235889999999999999999976
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC-cccCCCCC---CCCCCCCC-----CCC
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSS-SVYGLNTK---VPFSEKDR-----TDQ 246 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~-~v~g~~~~---~~~~e~~~-----~~~ 246 (439)
|+|||+||.. ..++...+++|+.|+.+++++|++.+.. +||++||. ++||.... .+++|+++ +..
T Consensus 83 d~Vih~A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~ 156 (342)
T PLN02214 83 DGVFHTASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKN 156 (342)
T ss_pred CEEEEecCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeccceeeeccCCCCCCcccCcccCCChhhccc
Confidence 9999999864 2567889999999999999999998854 99999995 68875332 24666643 223
Q ss_pred CCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCC--hHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 247 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDM--AYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
|.+.|+.+|.++|.+++.+.+++|++++++||++||||+..+.. ....++ .++.+.... + ++..++|||++
T Consensus 157 p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~-~~~~g~~~~-~-----~~~~~~~i~V~ 229 (342)
T PLN02214 157 TKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVL-KYLTGSAKT-Y-----ANLTQAYVDVR 229 (342)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCccc-C-----CCCCcCeeEHH
Confidence 56789999999999999998888999999999999999865321 122222 344555432 2 24578999999
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCC-ccccccccCCCCCCCCcccCChHH
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKV-KAKRNIMKLPRNGDVPFTHANISL 403 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~d~~k 403 (439)
|+|++++.+++.... ++.||+++ ..+++.|+++.+.+.++. +.+.... ...........+|++|
T Consensus 230 Dva~a~~~al~~~~~-------------~g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~k 294 (342)
T PLN02214 230 DVALAHVLVYEAPSA-------------SGRYLLAE-SARHRGEVVEILAKLFPEYPLPTKCK-DEKNPRAKPYKFTNQK 294 (342)
T ss_pred HHHHHHHHHHhCccc-------------CCcEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCc-cccCCCCCccccCcHH
Confidence 999999999986432 15799987 578999999999999863 2121111 1122334455689999
Q ss_pred HHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 404 AQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 404 ~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
++ +|||+|+ +++|+|+++++||++.
T Consensus 295 ~~-~LG~~p~-~lee~i~~~~~~~~~~ 319 (342)
T PLN02214 295 IK-DLGLEFT-STKQSLYDTVKSLQEK 319 (342)
T ss_pred HH-HcCCccc-CHHHHHHHHHHHHHHc
Confidence 97 6999995 9999999999999875
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=315.25 Aligned_cols=293 Identities=22% Similarity=0.337 Sum_probs=234.0
Q ss_pred EEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEEcc
Q 013602 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLA 182 (439)
Q Consensus 103 lItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~~A 182 (439)
|||||+||||++|++.|+++|++|+++.+. ..+|++|.+++.++++..++|+|||+|
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~-----------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A 57 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH-----------------------KELDLTRQADVEAFFAKEKPTYVILAA 57 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc-----------------------ccCCCCCHHHHHHHHhccCCCEEEEee
Confidence 699999999999999999999998876541 148999999999999988889999999
Q ss_pred cccCc-cccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC---CCCCCC-hHHHHHHH
Q 013602 183 AQAGV-RYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR---TDQPAS-LYAATKKA 257 (439)
Q Consensus 183 g~~~~-~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~---~~~p~~-~Y~~sK~a 257 (439)
+.... .....++...+++|+.++.+++++|++.+.. +||++||..+||.....+++|++. +..|.+ .|+.+|.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~ 136 (306)
T PLN02725 58 AKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIA 136 (306)
T ss_pred eeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHH
Confidence 97542 2234567788999999999999999998854 999999999999776777888763 223433 59999999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCC----CChHHHHHH----HHHcCCCCceeecCCCCcceeeeeeHHHHHHH
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP----DMAYFFFTR----DILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~----~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a 329 (439)
+|.+++.+.+.++++++++||+.||||+... ...+..++. ....+.++..+ .+++.+.++|+|++|++++
T Consensus 137 ~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~g~~~~~~i~v~Dv~~~ 214 (306)
T PLN02725 137 GIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVV--WGSGSPLREFLHVDDLADA 214 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEE--cCCCCeeeccccHHHHHHH
Confidence 9999999988889999999999999997531 122333333 23445555441 1578889999999999999
Q ss_pred HHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcC
Q 013602 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELG 409 (439)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG 409 (439)
++.+++.... .+.||++++.++|+.|+++.+.+.++.+..+...+ .+........+|.+|++ +||
T Consensus 215 ~~~~~~~~~~-------------~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k~~-~lg 279 (306)
T PLN02725 215 VVFLMRRYSG-------------AEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDT-SKPDGTPRKLMDSSKLR-SLG 279 (306)
T ss_pred HHHHHhcccc-------------CcceEeCCCCcccHHHHHHHHHHHhCCCCceeecC-CCCCcccccccCHHHHH-HhC
Confidence 9999876431 15789999999999999999999999766554332 22333445678999996 699
Q ss_pred CCccCcHHHHHHHHHHHHHHHccCCCC
Q 013602 410 YKPTTDLQTGLKKFVRWYLSYYAGGKK 436 (439)
Q Consensus 410 ~~p~~~l~e~l~~~v~~~~~~~~~~~~ 436 (439)
|+|+++++|+|.++++|+.++.+.+.+
T Consensus 280 ~~p~~~~~~~l~~~~~~~~~~~~~~~~ 306 (306)
T PLN02725 280 WDPKFSLKDGLQETYKWYLENYETGGK 306 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhccCC
Confidence 999999999999999999999887653
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=313.31 Aligned_cols=281 Identities=19% Similarity=0.205 Sum_probs=227.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+||||||+||||++++++|+++| +|++++|.. ..+.+|++|.+.+.+++++.++|+||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~--------------------~~~~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHS--------------------TDYCGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEecccc--------------------ccccCCCCCHHHHHHHHHhcCCCEEE
Confidence 579999999999999999999999 799988721 13468999999999999987889999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+|+......++.+++..+++|+.|+.+++++|++.+. ++|++||..|||.....++.|++++ .|.+.|+.+|+++|
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~Ss~~Vy~~~~~~p~~E~~~~-~P~~~Yg~sK~~~E 136 (299)
T PRK09987 60 NAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYSTDYVFPGTGDIPWQETDAT-APLNVYGETKLAGE 136 (299)
T ss_pred ECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEccceEECCCCCCCcCCCCCC-CCCCHHHHHHHHHH
Confidence 99998777667778888899999999999999999884 8999999999998766788888776 78899999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCC--CcceeeeeeHHHHHHHHHHHHhhc
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH--GTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
.+++.+ ..+.+++||++||||++. .++..++..+..++.+.++ ++ +...+.+.+++|++.++..+++..
T Consensus 137 ~~~~~~----~~~~~ilR~~~vyGp~~~--~~~~~~~~~~~~~~~~~v~---~d~~g~~~~~~~~~d~~~~~~~~~~~~~ 207 (299)
T PRK09987 137 KALQEH----CAKHLIFRTSWVYAGKGN--NFAKTMLRLAKEREELSVI---NDQFGAPTGAELLADCTAHAIRVALNKP 207 (299)
T ss_pred HHHHHh----CCCEEEEecceecCCCCC--CHHHHHHHHHhcCCCeEEe---CCCcCCCCCHHHHHHHHHHHHHHhhccC
Confidence 999875 346799999999999753 4556777777788888776 33 455556667777888888776432
Q ss_pred hhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhC---Cccc---cccccC----CCCCCCCcccCChHHHHHH
Q 013602 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLK---VKAK---RNIMKL----PRNGDVPFTHANISLAQRE 407 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g---~~~~---~~~~~~----~~~~~~~~~~~d~~k~~~~ 407 (439)
. .+++||+++++++|+.|+++.|.+..+ .+.+ +...+. ....++....+|++|+++.
T Consensus 208 ~-------------~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~ 274 (299)
T PRK09987 208 E-------------VAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQN 274 (299)
T ss_pred C-------------CCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHH
Confidence 2 116999999999999999999988643 3321 112221 1234566778999999999
Q ss_pred cCCCccCcHHHHHHHHHHHH
Q 013602 408 LGYKPTTDLQTGLKKFVRWY 427 (439)
Q Consensus 408 LG~~p~~~l~e~l~~~v~~~ 427 (439)
|||+|. +|+|+|+++++.+
T Consensus 275 lg~~~~-~~~~~l~~~~~~~ 293 (299)
T PRK09987 275 FALVLP-DWQVGVKRMLTEL 293 (299)
T ss_pred hCCCCc-cHHHHHHHHHHHH
Confidence 999986 9999999999865
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=314.86 Aligned_cols=309 Identities=16% Similarity=0.212 Sum_probs=224.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+.+|+||||||+||||++++++|+++|++|++++|+....... .........++++++.+|++|.+++.++++++ |
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 82 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKI--AHLRALQELGDLKIFGADLTDEESFEAPIAGC--D 82 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHH--HHHHhcCCCCceEEEEcCCCChHHHHHHHhcC--C
Confidence 5678999999999999999999999999999999864321100 00011111136889999999999999999876 9
Q ss_pred EEEEcccccCccccccChh-HHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC----CCCCCCCCC--------
Q 013602 177 HVMHLAAQAGVRYAMQNPN-SYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT----KVPFSEKDR-------- 243 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~-~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~----~~~~~e~~~-------- 243 (439)
+|||+||... ....++. ..+++|+.|+.++++++.+.+..++||++||.++||... ..++.|+.+
T Consensus 83 ~vih~A~~~~--~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~ 160 (338)
T PLN00198 83 LVFHVATPVN--FASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTS 160 (338)
T ss_pred EEEEeCCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhh
Confidence 9999999632 2223333 567999999999999998874345999999999998532 233444321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC--ChHHHHHHHHHcCCCCceeecCCC--Ccceee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD--MAYFFFTRDILNRKSIPIFESPDH--GTVARD 319 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~ 319 (439)
...|.++|+.||.++|.+++.+.+++|++++++||++||||+.... ..+ .++..++.++.+......+. ....++
T Consensus 161 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 239 (338)
T PLN00198 161 EKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSL-SLAMSLITGNEFLINGLKGMQMLSGSIS 239 (338)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcH-HHHHHHHcCCccccccccccccccCCcc
Confidence 1246778999999999999999988899999999999999985432 122 23345666666554310000 122479
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCC-ccccccccCCCCCCCCccc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKV-KAKRNIMKLPRNGDVPFTH 398 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~ 398 (439)
|+||+|+|++++.+++..... +.| ++++..+++.|+++.+.+.++. +.+......+ ......
T Consensus 240 ~i~V~D~a~a~~~~~~~~~~~-------------~~~-~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~---~~~~~~ 302 (338)
T PLN00198 240 ITHVEDVCRAHIFLAEKESAS-------------GRY-ICCAANTSVPELAKFLIKRYPQYQVPTDFGDFP---SKAKLI 302 (338)
T ss_pred eeEHHHHHHHHHHHhhCcCcC-------------CcE-EEecCCCCHHHHHHHHHHHCCCCCCCccccccC---CCCccc
Confidence 999999999999998764321 457 4556778999999999998863 2222221111 123456
Q ss_pred CChHHHHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 399 ANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 399 ~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
+|.+|+++ +||+|+++++|+|+++++||+++
T Consensus 303 ~~~~k~~~-~G~~p~~~l~~gi~~~~~~~~~~ 333 (338)
T PLN00198 303 ISSEKLIS-EGFSFEYGIEEIYDQTVEYFKAK 333 (338)
T ss_pred cChHHHHh-CCceecCcHHHHHHHHHHHHHHc
Confidence 89999977 69999999999999999999864
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=311.48 Aligned_cols=292 Identities=21% Similarity=0.329 Sum_probs=218.9
Q ss_pred EEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHH----HHHhhcc---cC
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMAL----LKKLFDV---VS 174 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~----~~~~~~~---~~ 174 (439)
||||||+||||++|+++|+++|++|+++.|....... . ..+..+|+.|... ++++++. .+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~---~----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 68 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK---F----------VNLVDLDIADYMDKEDFLAQIMAGDDFGD 68 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchH---H----------HhhhhhhhhhhhhHHHHHHHHhcccccCC
Confidence 8999999999999999999999987777664322100 0 0122345555433 2333322 15
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
+|+|||+||..... ..++...+++|+.++.+++++|++.+. +||++||.++||.....+..|+++. .|.+.|+.+
T Consensus 69 ~d~Vih~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 143 (308)
T PRK11150 69 IEAIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTDDFIEEREYE-KPLNVYGYS 143 (308)
T ss_pred ccEEEECceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEcchHHhCcCCCCCCccCCCC-CCCCHHHHH
Confidence 79999999864432 234556899999999999999999874 7999999999997655455555544 678899999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCC----hHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDM----AYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
|.++|++++.+.+..+++++++||++||||+..+.. ....+...+.++....++. ++++..++|+|++|+|+++
T Consensus 144 K~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--g~~~~~r~~i~v~D~a~a~ 221 (308)
T PRK11150 144 KFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFE--GSENFKRDFVYVGDVAAVN 221 (308)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEec--CCCceeeeeeeHHHHHHHH
Confidence 999999999998878999999999999999865432 2334556677777655552 4667889999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCC---CCCCcccCChHHHHHH
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN---GDVPFTHANISLAQRE 407 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~k~~~~ 407 (439)
+.+++... +++||+++++++|+.|+++.+.+.+|.. .+...+.+.. .......+|.+|+++
T Consensus 222 ~~~~~~~~--------------~~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~- 285 (308)
T PRK11150 222 LWFWENGV--------------SGIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPFPDKLKGRYQAFTQADLTKLRA- 285 (308)
T ss_pred HHHHhcCC--------------CCeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccCccccccccceecccCHHHHHh-
Confidence 98886422 1699999999999999999999999852 2233333321 112345689999975
Q ss_pred cCCCcc-CcHHHHHHHHHHHHHH
Q 013602 408 LGYKPT-TDLQTGLKKFVRWYLS 429 (439)
Q Consensus 408 LG~~p~-~~l~e~l~~~v~~~~~ 429 (439)
+||+|. ++++|+|+++++|+.+
T Consensus 286 ~g~~p~~~~~~~gl~~~~~~~~~ 308 (308)
T PRK11150 286 AGYDKPFKTVAEGVAEYMAWLNR 308 (308)
T ss_pred cCCCCCCCCHHHHHHHHHHHhhC
Confidence 799987 5999999999999863
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=308.18 Aligned_cols=302 Identities=19% Similarity=0.231 Sum_probs=225.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
++|+||||||+||||++++++|+++|++|++++|+....... ...........+++++.+|++|++.+.++++++ |+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d~ 79 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKT-EHLLALDGAKERLHLFKANLLEEGSFDSVVDGC--EG 79 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhH-HHHHhccCCCCceEEEeccccCcchHHHHHcCC--CE
Confidence 468999999999999999999999999999999865421111 000000011247899999999999999999977 99
Q ss_pred EEEcccccCccccccChh-HHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCc--ccCCCC---CCCCCCCCCCCCC---
Q 013602 178 VMHLAAQAGVRYAMQNPN-SYVHSNIAGLVSLLEVCKNA-NPQPAIVWASSSS--VYGLNT---KVPFSEKDRTDQP--- 247 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~-~~~~~Nv~gt~~ll~~~~~~-~~~~~~V~~SS~~--v~g~~~---~~~~~e~~~~~~p--- 247 (439)
|||+|+... ....++. ..+++|+.|+.+++++|.+. +. ++||++||.+ +|+... ..+++|+.+. .|
T Consensus 80 Vih~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~-~p~~~ 155 (322)
T PLN02662 80 VFHTASPFY--HDVTDPQAELIDPAVKGTLNVLRSCAKVPSV-KRVVVTSSMAAVAYNGKPLTPDVVVDETWFS-DPAFC 155 (322)
T ss_pred EEEeCCccc--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEccCHHHhcCCCcCCCCCCcCCcccCC-ChhHh
Confidence 999999743 2223443 78899999999999999887 54 4999999976 465322 2345665433 22
Q ss_pred ---CChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC-ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeH
Q 013602 248 ---ASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD-MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYI 323 (439)
Q Consensus 248 ---~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v 323 (439)
.+.|+.+|.++|.+++.+.++++++++++||++||||+..+. .....++..++.+... + +.+.++|+|+
T Consensus 156 ~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~i~v 228 (322)
T PLN02662 156 EESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQT--F-----PNASYRWVDV 228 (322)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCcc--C-----CCCCcCeEEH
Confidence 358999999999999999888899999999999999986543 2333445555665432 1 2457899999
Q ss_pred HHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHH
Q 013602 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISL 403 (439)
Q Consensus 324 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 403 (439)
+|+|++++.+++.+... +.||++ +.++++.|+++.+.+.++.. .......+...+.....+|++|
T Consensus 229 ~Dva~a~~~~~~~~~~~-------------~~~~~~-g~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~d~~k 293 (322)
T PLN02662 229 RDVANAHIQAFEIPSAS-------------GRYCLV-ERVVHYSEVVKILHELYPTL-QLPEKCADDKPYVPTYQVSKEK 293 (322)
T ss_pred HHHHHHHHHHhcCcCcC-------------CcEEEe-CCCCCHHHHHHHHHHHCCCC-CCCCCCCCccccccccccChHH
Confidence 99999999998865321 468887 47899999999999998742 1111111122244556799999
Q ss_pred HHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 404 AQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 404 ~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
++ .|||++ ++++|+|+++++||+++
T Consensus 294 ~~-~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
T PLN02662 294 AK-SLGIEF-IPLEVSLKDTVESLKEK 318 (322)
T ss_pred HH-HhCCcc-ccHHHHHHHHHHHHHHc
Confidence 98 599997 59999999999999865
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=307.18 Aligned_cols=302 Identities=17% Similarity=0.225 Sum_probs=224.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+|+||||||+||||++++++|+++|++|+++.|+........ ..........+++++.+|++|.+++.++++++ |+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d~ 80 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTE-HLLALDGAKERLKLFKADLLEESSFEQAIEGC--DA 80 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHH-HHHhccCCCCceEEEecCCCCcchHHHHHhCC--CE
Confidence 5789999999999999999999999999999998654321111 00000011246899999999999999999976 99
Q ss_pred EEEcccccCccccccCh-hHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCccc--CCC---CCCCCCCCCCCC-----C
Q 013602 178 VMHLAAQAGVRYAMQNP-NSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVY--GLN---TKVPFSEKDRTD-----Q 246 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~-~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~--g~~---~~~~~~e~~~~~-----~ 246 (439)
|||+|+.... ...++ ...+++|+.|+.+++++|++....+|||++||.++| +.. ...+++|+++.. .
T Consensus 81 vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~ 158 (322)
T PLN02986 81 VFHTASPVFF--TVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRE 158 (322)
T ss_pred EEEeCCCcCC--CCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhc
Confidence 9999997432 22333 357899999999999999986324599999998754 432 123456665431 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC-ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHH
Q 013602 247 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD-MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDD 325 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~D 325 (439)
+.+.|+.+|.++|.+++++.+++|++++++||++||||+..+. .....++..++.+... + +...++|+|++|
T Consensus 159 ~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~--~-----~~~~~~~v~v~D 231 (322)
T PLN02986 159 TKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNL--F-----NNRFYRFVDVRD 231 (322)
T ss_pred cccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCC--C-----CCcCcceeEHHH
Confidence 3578999999999999999888899999999999999986543 2223455556666542 2 245689999999
Q ss_pred HHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCc--ccCChHH
Q 013602 326 IVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPF--THANISL 403 (439)
Q Consensus 326 va~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~--~~~d~~k 403 (439)
+|++++.+++.+... +.||++ ++.+|+.|+++++.+.++. ..+... ...++... ..+|.+|
T Consensus 232 va~a~~~al~~~~~~-------------~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~~--~~~~~~~~~~~~~d~~~ 294 (322)
T PLN02986 232 VALAHIKALETPSAN-------------GRYIID-GPIMSVNDIIDILRELFPD-LCIADT--NEESEMNEMICKVCVEK 294 (322)
T ss_pred HHHHHHHHhcCcccC-------------CcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCCC--CccccccccCCccCHHH
Confidence 999999999875421 579995 5689999999999999873 222211 11222222 2478998
Q ss_pred HHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 404 AQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 404 ~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
++ +|||+|+ +++|+|+++++||++.
T Consensus 295 ~~-~lg~~~~-~l~e~~~~~~~~~~~~ 319 (322)
T PLN02986 295 VK-NLGVEFT-PMKSSLRDTILSLKEK 319 (322)
T ss_pred HH-HcCCccc-CHHHHHHHHHHHHHHc
Confidence 85 5999997 8999999999999763
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=311.13 Aligned_cols=307 Identities=17% Similarity=0.223 Sum_probs=221.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..|+||||||+||||++++++|+++|++|++++|+........ ...... ....+.++.+|++|.+.+.++++++ |
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~--d 79 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVK--HLLDLPGATTRLTLWKADLAVEGSFDDAIRGC--T 79 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHH--HHHhccCCCCceEEEEecCCChhhHHHHHhCC--C
Confidence 4579999999999999999999999999999998543211110 000000 1135889999999999999999876 9
Q ss_pred EEEEcccccCccccccCh-hHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-CCC-CCCCCCC--------C
Q 013602 177 HVMHLAAQAGVRYAMQNP-NSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT-KVP-FSEKDRT--------D 245 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~-~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~-~~~-~~e~~~~--------~ 245 (439)
+|||+|+.... ...++ ...+++|+.|+.+++++|++.+..++||++||.++|+... ..+ +.|++.. .
T Consensus 80 ~ViH~A~~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 157 (351)
T PLN02650 80 GVFHVATPMDF--ESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKK 157 (351)
T ss_pred EEEEeCCCCCC--CCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccc
Confidence 99999986432 22233 4789999999999999999877445999999997776432 223 3554321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHH--HHcCCCCceeecCCCCcceeeeeeH
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRD--ILNRKSIPIFESPDHGTVARDFTYI 323 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~i~v 323 (439)
.+.++|+.||.++|.+++.+.+++|++++++||++||||+...... ..++.. ...+.... + .....++|+|+
T Consensus 158 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~-~~~~~~~~~~~~~~~~-~----~~~~~r~~v~V 231 (351)
T PLN02650 158 MTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMP-PSLITALSLITGNEAH-Y----SIIKQGQFVHL 231 (351)
T ss_pred cccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCC-ccHHHHHHHhcCCccc-c----CcCCCcceeeH
Confidence 2346899999999999999998899999999999999998653221 122221 23333321 2 11234799999
Q ss_pred HHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHH
Q 013602 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISL 403 (439)
Q Consensus 324 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 403 (439)
+|+|++++.+++.+.. ++.| ++++..+|+.|+++.+.+.++.. ...........+.....+|.+|
T Consensus 232 ~Dva~a~~~~l~~~~~-------------~~~~-i~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~d~~k 296 (351)
T PLN02650 232 DDLCNAHIFLFEHPAA-------------EGRY-ICSSHDATIHDLAKMLREKYPEY-NIPARFPGIDEDLKSVEFSSKK 296 (351)
T ss_pred HHHHHHHHHHhcCcCc-------------CceE-EecCCCcCHHHHHHHHHHhCccc-CCCCCCCCcCcccccccCChHH
Confidence 9999999999876432 1467 55667899999999999988632 1111111122344455678888
Q ss_pred HHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 404 AQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 404 ~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
+ ++|||+|+++++|+|+++++||++...
T Consensus 297 ~-~~lG~~p~~~l~egl~~~i~~~~~~~~ 324 (351)
T PLN02650 297 L-TDLGFTFKYSLEDMFDGAIETCREKGL 324 (351)
T ss_pred H-HHhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 7 579999999999999999999987643
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=302.28 Aligned_cols=302 Identities=34% Similarity=0.547 Sum_probs=244.9
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMH 180 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~ 180 (439)
.||||||+||||++|+++|+++|++|++++|......... .++.++.+|++|.+.+.++++.++ |+|||
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~-d~vih 70 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL----------SGVEFVVLDLTDRDLVDELAKGVP-DAVIH 70 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc----------cccceeeecccchHHHHHHHhcCC-CEEEE
Confidence 4999999999999999999999999999999554322111 578899999999988888888777 99999
Q ss_pred cccccCcccccc-ChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCC-CCCCCCCC-CCCCCCCChHHHHHHH
Q 013602 181 LAAQAGVRYAMQ-NPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLN-TKVPFSEK-DRTDQPASLYAATKKA 257 (439)
Q Consensus 181 ~Ag~~~~~~~~~-~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~-~~~~~~e~-~~~~~p~~~Y~~sK~a 257 (439)
+|+......... ++...+.+|+.|+.+++++|++.+. ++||+.||.++|+.. ...++.|+ .+. .|.+.|+.+|++
T Consensus 71 ~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~-~~~v~~ss~~~~~~~~~~~~~~E~~~~~-~p~~~Yg~sK~~ 148 (314)
T COG0451 71 LAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGV-KRFVFASSVSVVYGDPPPLPIDEDLGPP-RPLNPYGVSKLA 148 (314)
T ss_pred ccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-CeEEEeCCCceECCCCCCCCcccccCCC-CCCCHHHHHHHH
Confidence 999865543333 4567999999999999999999664 499998888877765 33356666 333 566699999999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCC---ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHH
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD---MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 334 (439)
+|..++.+.+..|++++++||++||||++.+. .....++..+.++.+..... +++...++|+|++|++++++.++
T Consensus 149 ~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~v~D~a~~~~~~~ 226 (314)
T COG0451 149 AEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIG--GDGSQTRDFVYVDDVADALLLAL 226 (314)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEe--CCCceeEeeEeHHHHHHHHHHHH
Confidence 99999999987899999999999999998765 45555566677777633331 46788899999999999999999
Q ss_pred hhchhccCCCCCccCCCCCcEEEecCCC-cccHHHHHHHHHHHhCCccc-cccccC-CCCCCCCcccCChHHHHHHcCCC
Q 013602 335 DTAEKSTGSGGKKRGRAQLRVFNLGNTS-PVPVSDLVSILERLLKVKAK-RNIMKL-PRNGDVPFTHANISLAQRELGYK 411 (439)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~t~~el~~~l~~~~g~~~~-~~~~~~-~~~~~~~~~~~d~~k~~~~LG~~ 411 (439)
+++.. ..||++++. ++++.|+++.+.+.+|.+.. +...+. ..........+|.+|++++|||.
T Consensus 227 ~~~~~--------------~~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 292 (314)
T COG0451 227 ENPDG--------------GVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWE 292 (314)
T ss_pred hCCCC--------------cEEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhCCC
Confidence 97663 289999987 89999999999999998766 333332 23333445578999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHc
Q 013602 412 PTTDLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 412 p~~~l~e~l~~~v~~~~~~~ 431 (439)
|.+++++++.++++|+..+.
T Consensus 293 p~~~~~~~i~~~~~~~~~~~ 312 (314)
T COG0451 293 PKVSLEEGLADTLEWLLKKL 312 (314)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998764
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=309.53 Aligned_cols=311 Identities=17% Similarity=0.222 Sum_probs=221.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+.+|+||||||+||||++++++|+++|++|++++|+... ............++.++.+|++|.+++.++++++ |
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d 81 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAK----SLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGC--D 81 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHH----HHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCC--C
Confidence 567899999999999999999999999999999884321 0111111111246889999999999999999865 9
Q ss_pred EEEEcccccCccc--cccChhH-----HHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC-----CCCCCCCCC
Q 013602 177 HVMHLAAQAGVRY--AMQNPNS-----YVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTK-----VPFSEKDRT 244 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~--~~~~~~~-----~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~-----~~~~e~~~~ 244 (439)
+|||+||...... ...++.. .+++|+.|+.+++++|++.+..++||++||.++||.... .+++|+...
T Consensus 82 ~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~ 161 (353)
T PLN02896 82 GVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQT 161 (353)
T ss_pred EEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCC
Confidence 9999999755432 2234443 445567999999999988753459999999999985321 345554211
Q ss_pred --------CCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHH---HcCCCC--ceeecC
Q 013602 245 --------DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDI---LNRKSI--PIFESP 311 (439)
Q Consensus 245 --------~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~---~~g~~~--~~~~~~ 311 (439)
..+.++|+.||+++|.++..+.+.++++++++||++||||+..+.. +.++..+ ..|... +.+...
T Consensus 162 p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~ 239 (353)
T PLN02896 162 PIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSV--PSSIQVLLSPITGDSKLFSILSAV 239 (353)
T ss_pred cHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCC--CchHHHHHHHhcCCcccccccccc
Confidence 1234589999999999999999888999999999999999865321 1222222 234322 111000
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCc-cccccccCCC
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVK-AKRNIMKLPR 390 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~-~~~~~~~~~~ 390 (439)
......++|+|++|+|++++.+++.... ++.|++ ++.++++.|+++.+.+.++.. ..+...+ +.
T Consensus 240 ~~~~~~~dfi~v~Dva~a~~~~l~~~~~-------------~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~-~~ 304 (353)
T PLN02896 240 NSRMGSIALVHIEDICDAHIFLMEQTKA-------------EGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDE-EK 304 (353)
T ss_pred ccccCceeEEeHHHHHHHHHHHHhCCCc-------------CccEEe-cCCCCCHHHHHHHHHHhCCCCCccccccc-cc
Confidence 0112246999999999999999875321 146754 567899999999999999732 2222222 22
Q ss_pred CCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 391 NGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 391 ~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
..+.+ ...|.++++ +|||+|+++++++|+++++||+++-.
T Consensus 305 ~~~~~-~~~~~~~~~-~lGw~p~~~l~~~i~~~~~~~~~~~~ 344 (353)
T PLN02896 305 RGSIP-SEISSKKLR-DLGFEYKYGIEEIIDQTIDCCVDHGF 344 (353)
T ss_pred cCccc-cccCHHHHH-HcCCCccCCHHHHHHHHHHHHHHCCC
Confidence 23333 346888885 59999999999999999999998754
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=304.38 Aligned_cols=298 Identities=26% Similarity=0.406 Sum_probs=232.9
Q ss_pred EEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcc--cCccEE
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDV--VSFTHV 178 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~--~~~d~V 178 (439)
||||||+||||+++++.|.++|+ .|++++|..... .... .....+..|+.+.+.++.+.+. .++|+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-------~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~D~v 70 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-------KFLN---LADLVIADYIDKEDFLDRLEKGAFGKIEAI 70 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-------hhhh---hhheeeeccCcchhHHHHHHhhccCCCCEE
Confidence 69999999999999999999998 788887743210 0000 0113567788888888777652 356999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
||+|+... ....++...+++|+.++.+++++|++.+. +||++||.++|+... .++.|++.+..|.+.|+.+|.++
T Consensus 71 vh~A~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~-~~~~e~~~~~~p~~~Y~~sK~~~ 145 (314)
T TIGR02197 71 FHQGACSD--TTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYASSAATYGDGE-AGFREGRELERPLNVYGYSKFLF 145 (314)
T ss_pred EECccccC--ccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEccHHhcCCCC-CCcccccCcCCCCCHHHHHHHHH
Confidence 99999743 33456778899999999999999998874 899999999998754 35667665545788999999999
Q ss_pred HHHHHHHHh--HhCCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCCCceeec---CCCCcceeeeeeHHHHHHH
Q 013602 259 EEIAHTYNH--IYGLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKSIPIFES---PDHGTVARDFTYIDDIVKG 329 (439)
Q Consensus 259 E~~~~~~~~--~~gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~i~v~Dva~a 329 (439)
|.+++++.. ..+++++++||++||||+.... ..+..++..+..++.+.++.. .+++++.++|+|++|++++
T Consensus 146 e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~ 225 (314)
T TIGR02197 146 DQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDV 225 (314)
T ss_pred HHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHH
Confidence 999987543 2367999999999999986432 345566777778877766421 1467888999999999999
Q ss_pred HHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCC---CCCcccCChHHHHH
Q 013602 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNG---DVPFTHANISLAQR 406 (439)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~---~~~~~~~d~~k~~~ 406 (439)
++.++.. .. +++||+++++++|+.|+++.+.+.+|.+..+...+.|... ......+|++|+++
T Consensus 226 i~~~~~~-~~-------------~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 291 (314)
T TIGR02197 226 NLWLLEN-GV-------------SGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRA 291 (314)
T ss_pred HHHHHhc-cc-------------CceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHH
Confidence 9999886 21 1699999999999999999999999976655544444321 22345689999999
Q ss_pred HcCCCccCcHHHHHHHHHHHHH
Q 013602 407 ELGYKPTTDLQTGLKKFVRWYL 428 (439)
Q Consensus 407 ~LG~~p~~~l~e~l~~~v~~~~ 428 (439)
.|||+|+++++|+|+++++|+.
T Consensus 292 ~l~~~p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 292 AGYYGPFTTLEEGVKDYVQWLL 313 (314)
T ss_pred hcCCCCcccHHHHHHHHHHHHh
Confidence 9999999999999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=302.99 Aligned_cols=313 Identities=28% Similarity=0.440 Sum_probs=240.4
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMH 180 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~ 180 (439)
+||||||+|+||++++++|+++|++|++++|......... .......+++++.+|++|.+++.++++..++|+|||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~ 76 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEAL----KRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIH 76 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhh----hhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 5899999999999999999999999999876332211110 111111267889999999999999998767899999
Q ss_pred cccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 013602 181 LAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEE 260 (439)
Q Consensus 181 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~ 260 (439)
|||.........++...+++|+.++.++++++.+.+.. +||++||.++||.....++.|+++. .|...|+.+|.++|.
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~ss~~~~g~~~~~~~~e~~~~-~~~~~y~~sK~~~e~ 154 (328)
T TIGR01179 77 FAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSSSAAVYGEPSSIPISEDSPL-GPINPYGRSKLMSER 154 (328)
T ss_pred CccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC-EEEEecchhhcCCCCCCCccccCCC-CCCCchHHHHHHHHH
Confidence 99975444444566788999999999999999988754 9999999999987666677777765 577899999999999
Q ss_pred HHHHHHhH-hCCcEEEEeeccccCCCCCC---------CChHHHHHHHHH-cCCCCceeec---CCCCcceeeeeeHHHH
Q 013602 261 IAHTYNHI-YGLSLTGLRFFTVYGPWGRP---------DMAYFFFTRDIL-NRKSIPIFES---PDHGTVARDFTYIDDI 326 (439)
Q Consensus 261 ~~~~~~~~-~gi~~~ilrpg~v~G~~~~~---------~~~~~~~~~~~~-~g~~~~~~~~---~~~~~~~~~~i~v~Dv 326 (439)
+++.++++ .+++++++||+.||||.... ...+..+..... ....+..+.. .+++...++|+|++|+
T Consensus 155 ~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~ 234 (328)
T TIGR01179 155 ILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDL 234 (328)
T ss_pred HHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHH
Confidence 99999877 69999999999999985321 122333443333 2233333210 0256788999999999
Q ss_pred HHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHH
Q 013602 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQR 406 (439)
Q Consensus 327 a~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 406 (439)
+++++.++...... ..+++||+++++++|+.|+++.+.+.+|.+..+...+. ...+.....+|++|+++
T Consensus 235 a~~~~~~~~~~~~~----------~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 303 (328)
T TIGR01179 235 ADAHLAALEYLLNG----------GESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPR-RPGDPASLVADASKIRR 303 (328)
T ss_pred HHHHHHHHhhhhcC----------CCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCC-CCccccchhcchHHHHH
Confidence 99999998764321 12389999999999999999999999998776554432 22233344579999999
Q ss_pred HcCCCccCc-HHHHHHHHHHHHHHH
Q 013602 407 ELGYKPTTD-LQTGLKKFVRWYLSY 430 (439)
Q Consensus 407 ~LG~~p~~~-l~e~l~~~v~~~~~~ 430 (439)
.|||+|.++ ++++|+++++|+.+|
T Consensus 304 ~lg~~p~~~~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 304 ELGWQPKYTDLEIIIKTAWRWESRN 328 (328)
T ss_pred HhCCCCCcchHHHHHHHHHHHHhcC
Confidence 999999987 999999999999865
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=290.60 Aligned_cols=276 Identities=19% Similarity=0.223 Sum_probs=224.8
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMH 180 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~ 180 (439)
+||||||+||||++++++|+++|++|++++|. .+|+.|.+++.+++++.++|+|||
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~------------------------~~d~~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS------------------------QLDLTDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc------------------------ccCCCCHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999999999999881 479999999999999988999999
Q ss_pred cccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 013602 181 LAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEE 260 (439)
Q Consensus 181 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~ 260 (439)
+||.........++...+++|+.++.++++++++.+. +||++||.++|+.....++.|+++. .|.+.|+.+|.++|.
T Consensus 57 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~Ss~~vy~~~~~~~~~E~~~~-~~~~~Y~~~K~~~E~ 133 (287)
T TIGR01214 57 TAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHISTDYVFDGEGKRPYREDDAT-NPLNVYGQSKLAGEQ 133 (287)
T ss_pred CCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeeeeecCCCCCCCCCCCCC-CCcchhhHHHHHHHH
Confidence 9997654444456778899999999999999998873 8999999999987666778888766 677899999999999
Q ss_pred HHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhc
Q 013602 261 IAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKS 340 (439)
Q Consensus 261 ~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~ 340 (439)
+++.+ +.+++++||+.||||+.. ..++..++..+..++++... ++..++|+|++|+|++++.+++....
T Consensus 134 ~~~~~----~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~v~Dva~a~~~~~~~~~~- 202 (287)
T TIGR01214 134 AIRAA----GPNALIVRTSWLYGGGGG-RNFVRTMLRLAGRGEELRVV-----DDQIGSPTYAKDLARVIAALLQRLAR- 202 (287)
T ss_pred HHHHh----CCCeEEEEeeecccCCCC-CCHHHHHHHHhhcCCCceEe-----cCCCcCCcCHHHHHHHHHHHHhhccC-
Confidence 99875 789999999999999853 33445566666777766664 24678999999999999999976521
Q ss_pred cCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccc------c----CCCCCCCCcccCChHHHHHHcCC
Q 013602 341 TGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM------K----LPRNGDVPFTHANISLAQRELGY 410 (439)
Q Consensus 341 ~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~------~----~~~~~~~~~~~~d~~k~~~~LG~ 410 (439)
.+++||+++++.+|+.|+++.+.+.+|.+...... . ...........+|++|+++.|||
T Consensus 203 -----------~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~ 271 (287)
T TIGR01214 203 -----------ARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGT 271 (287)
T ss_pred -----------CCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCC
Confidence 22799999999999999999999999976431110 0 01122234567999999999999
Q ss_pred CccCcHHHHHHHHHHH
Q 013602 411 KPTTDLQTGLKKFVRW 426 (439)
Q Consensus 411 ~p~~~l~e~l~~~v~~ 426 (439)
++ ++++++|.++++.
T Consensus 272 ~~-~~~~~~l~~~~~~ 286 (287)
T TIGR01214 272 PL-PHWREALRAYLQE 286 (287)
T ss_pred CC-ccHHHHHHHHHhh
Confidence 54 5999999988763
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=283.04 Aligned_cols=307 Identities=19% Similarity=0.232 Sum_probs=229.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+++|+||||+||||+|++++|+++||+|++..|+.+..... ...........++..+.+|+.|++++.++++++ |.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~-~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc--dg 81 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKT-EHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC--DG 81 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhH-HHHHhcccCcccceEEeccccccchHHHHHhCC--CE
Confidence 578999999999999999999999999999999977641111 011111123346999999999999999999999 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC-----CCCCCCCCCCCCCC-----C
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGL-----NTKVPFSEKDRTDQ-----P 247 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~-----~~~~~~~e~~~~~~-----p 247 (439)
|||+|.+..+.... ...+.++.++.||.|++++|++....+|||++||.+.-.. .....++|+.+.+. .
T Consensus 82 VfH~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~ 160 (327)
T KOG1502|consen 82 VFHTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCK 160 (327)
T ss_pred EEEeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhh
Confidence 99999986554322 2337999999999999999999986679999999554332 22345667665321 2
Q ss_pred CChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChH-HHHHHHHHcCCCCceeecCCCCcceeeeeeHHHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAY-FFFTRDILNRKSIPIFESPDHGTVARDFTYIDDI 326 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dv 326 (439)
...|+.+|..+|..+++++++.|+..+.|.|+.|+||...+.... ......+++|..- .+ ......|+||+|+
T Consensus 161 ~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~-~~-----~n~~~~~VdVrDV 234 (327)
T KOG1502|consen 161 KLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAE-TY-----PNFWLAFVDVRDV 234 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccc-cC-----CCCceeeEeHHHH
Confidence 368999999999999999999899999999999999988764322 2344556666432 22 2334449999999
Q ss_pred HHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCC-CCCCCcccCChHHHH
Q 013602 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR-NGDVPFTHANISLAQ 405 (439)
Q Consensus 327 a~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~-~~~~~~~~~d~~k~~ 405 (439)
|.||+.+++.+... +.|.+.+ +..++.|++.++.+.++... +....... ........++++|++
T Consensus 235 A~AHv~a~E~~~a~-------------GRyic~~-~~~~~~ei~~~l~~~~P~~~-ip~~~~~~~~~~~~~~~~~~~k~k 299 (327)
T KOG1502|consen 235 ALAHVLALEKPSAK-------------GRYICVG-EVVSIKEIADILRELFPDYP-IPKKNAEEHEGFLTSFKVSSEKLK 299 (327)
T ss_pred HHHHHHHHcCcccC-------------ceEEEec-CcccHHHHHHHHHHhCCCCC-CCCCCCccccccccccccccHHHH
Confidence 99999999988854 4566555 45669999999999998544 21111011 122222357889996
Q ss_pred HHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 406 RELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 406 ~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
...|++.. +++|.+.++++++++.
T Consensus 300 ~lg~~~~~-~l~e~~~dt~~sl~~~ 323 (327)
T KOG1502|consen 300 SLGGFKFR-PLEETLSDTVESLREK 323 (327)
T ss_pred hcccceec-ChHHHHHHHHHHHHHh
Confidence 65557765 9999999999999875
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=293.88 Aligned_cols=296 Identities=26% Similarity=0.323 Sum_probs=228.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|+||||+||||+++++.|+++|++|++++|+.... ......+++++.+|++|.+++.++++.+ |+||
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~---------~~~~~~~~~~~~~D~~~~~~l~~~~~~~--d~vi 69 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDR---------RNLEGLDVEIVEGDLRDPASLRKAVAGC--RALF 69 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccc---------cccccCCceEEEeeCCCHHHHHHHHhCC--CEEE
Confidence 4799999999999999999999999999999954321 1112347889999999999999999977 9999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC-CCCCCCCCCCCCCC--CCChHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGL-NTKVPFSEKDRTDQ--PASLYAATKK 256 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~-~~~~~~~e~~~~~~--p~~~Y~~sK~ 256 (439)
|+|+... ....+++..+++|+.++.++++++++.+.. +||++||.++|+. ....++.|+.+... +.+.|+.+|.
T Consensus 70 ~~a~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~ 146 (328)
T TIGR03466 70 HVAADYR--LWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKF 146 (328)
T ss_pred Eeceecc--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHH
Confidence 9998632 234567889999999999999999988754 9999999999985 33456677655421 2468999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhh
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
++|.+++++..+++++++++||+++|||+.........++.....+. .+.+. +...+|+|++|+|++++.+++.
T Consensus 147 ~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~i~v~D~a~a~~~~~~~ 220 (328)
T TIGR03466 147 LAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGK-MPAYV-----DTGLNLVHVDDVAEGHLLALER 220 (328)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCC-Cceee-----CCCcceEEHHHHHHHHHHHHhC
Confidence 99999999988889999999999999998653333333333444443 23321 2336899999999999999876
Q ss_pred chhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCC--------------CCCC--------
Q 013602 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR--------------NGDV-------- 394 (439)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~--------------~~~~-------- 394 (439)
.. .++.|+++ ++++|+.|+++.+.+.+|.+......|.+. .+..
T Consensus 221 ~~-------------~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (328)
T TIGR03466 221 GR-------------IGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGV 286 (328)
T ss_pred CC-------------CCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 33 12678885 688999999999999999765443322110 0111
Q ss_pred ----CcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 395 ----PFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 395 ----~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
....+|++|+++.|||+|+ +++++|.++++||+++
T Consensus 287 ~~~~~~~~~d~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 287 RMAKKKMFFSSAKAVRELGYRQR-PAREALRDAVEWFRAN 325 (328)
T ss_pred HHHhccCCCChHHHHHHcCCCCc-CHHHHHHHHHHHHHHh
Confidence 2346899999999999996 9999999999999875
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=291.55 Aligned_cols=280 Identities=24% Similarity=0.377 Sum_probs=216.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+||||||+|+||+++++.|.++|++|+...|. .+|++|.+++.++++..+||+||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~------------------------~~dl~d~~~~~~~~~~~~pd~Vi 56 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS------------------------DLDLTDPEAVAKLLEAFKPDVVI 56 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT------------------------CS-TTSHHHHHHHHHHH--SEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch------------------------hcCCCCHHHHHHHHHHhCCCeEe
Confidence 689999999999999999999999999999871 68999999999999999999999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+||...+..++.+++..+.+|+.++.+|+++|.+.+. ++||+||..||+.....++.|++.+ .|.+.||.+|+++|
T Consensus 57 n~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~--~li~~STd~VFdG~~~~~y~E~d~~-~P~~~YG~~K~~~E 133 (286)
T PF04321_consen 57 NCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA--RLIHISTDYVFDGDKGGPYTEDDPP-NPLNVYGRSKLEGE 133 (286)
T ss_dssp E------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS-SSTSSSB-TTS-----SSHHHHHHHHHH
T ss_pred ccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC--cEEEeeccEEEcCCcccccccCCCC-CCCCHHHHHHHHHH
Confidence 99999888888999999999999999999999999986 9999999999988888889999988 78999999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchh
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
..+++. .-+..|+|++.+||+.. ..++..+...+.+++.+.++ .+..++.+|++|+|++++.+++....
T Consensus 134 ~~v~~~----~~~~~IlR~~~~~g~~~--~~~~~~~~~~~~~~~~i~~~-----~d~~~~p~~~~dlA~~i~~l~~~~~~ 202 (286)
T PF04321_consen 134 QAVRAA----CPNALILRTSWVYGPSG--RNFLRWLLRRLRQGEPIKLF-----DDQYRSPTYVDDLARVILELIEKNLS 202 (286)
T ss_dssp HHHHHH-----SSEEEEEE-SEESSSS--SSHHHHHHHHHHCTSEEEEE-----SSCEE--EEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh----cCCEEEEecceecccCC--CchhhhHHHHHhcCCeeEee-----CCceeCCEEHHHHHHHHHHHHHhccc
Confidence 999984 33889999999999933 45777888888899998885 47789999999999999999988774
Q ss_pred ccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcc-ccccccCCC----CCCCCcccCChHHHHHHcCCCccC
Q 013602 340 STGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKA-KRNIMKLPR----NGDVPFTHANISLAQRELGYKPTT 414 (439)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~-~~~~~~~~~----~~~~~~~~~d~~k~~~~LG~~p~~ 414 (439)
.. ..+++||+++++.+|..|+++.+.+.+|.+. .+...+... ........+|++|+++.||+++.
T Consensus 203 ~~---------~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~- 272 (286)
T PF04321_consen 203 GA---------SPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPP- 272 (286)
T ss_dssp -G---------GG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS----
T ss_pred cc---------ccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCc-
Confidence 21 1238999999999999999999999999776 222222111 22344668999999999999987
Q ss_pred cHHHHHHHHHHHH
Q 013602 415 DLQTGLKKFVRWY 427 (439)
Q Consensus 415 ~l~e~l~~~v~~~ 427 (439)
+++++|+++++.|
T Consensus 273 ~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 273 PWREGLEELVKQY 285 (286)
T ss_dssp BHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8999999999876
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=288.69 Aligned_cols=277 Identities=20% Similarity=0.214 Sum_probs=217.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
+++|+||||||+||||++++++|+++| ++|++++|+... ...........++.++.+|++|.+.+.++++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~-----~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~i- 75 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELK-----QWEMQQKFPAPCLRFFIGDVRDKERLTRALRGV- 75 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhH-----HHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcC-
Confidence 467899999999999999999999987 789999884321 111111122347889999999999999999876
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|+|||+||.......+.++...+++|+.|+.++++++++.+.. +||++||...+ .|.++|+.+
T Consensus 76 -D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~SS~~~~---------------~p~~~Y~~s 138 (324)
T TIGR03589 76 -DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALSTDKAA---------------NPINLYGAT 138 (324)
T ss_pred -CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeCCCCC---------------CCCCHHHHH
Confidence 9999999976544455677889999999999999999998754 99999996421 356789999
Q ss_pred HHHHHHHHHHHHh---HhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCC-CCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 255 KKAGEEIAHTYNH---IYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRK-SIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 255 K~a~E~~~~~~~~---~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
|+++|.+++.++. .+|++++++|||+||||++ ..+..+...+..+. .++++ ++.+.++|+|++|+++++
T Consensus 139 K~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~---~~i~~~~~~~~~~~~~~~i~----~~~~~r~~i~v~D~a~a~ 211 (324)
T TIGR03589 139 KLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG---SVVPFFKSLKEEGVTELPIT----DPRMTRFWITLEQGVNFV 211 (324)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEEeecceeCCCC---CcHHHHHHHHHhCCCCeeeC----CCCceEeeEEHHHHHHHH
Confidence 9999999988654 4589999999999999964 35666777666675 45653 577889999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCC-CcccCChHHHHHHcC
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDV-PFTHANISLAQRELG 409 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~-~~~~~d~~k~~~~LG 409 (439)
+.+++... .+++| ++.+..+++.|+++.+.+..+. ...+ .+.++. ....+|.+|++++||
T Consensus 212 ~~al~~~~-------------~~~~~-~~~~~~~sv~el~~~i~~~~~~----~~~~-~~~g~~~~~~~~~~~~~~~~lg 272 (324)
T TIGR03589 212 LKSLERML-------------GGEIF-VPKIPSMKITDLAEAMAPECPH----KIVG-IRPGEKLHEVMITEDDARHTYE 272 (324)
T ss_pred HHHHhhCC-------------CCCEE-ccCCCcEEHHHHHHHHHhhCCe----eEeC-CCCCchhHhhhcChhhhhhhcC
Confidence 99987532 12677 4666779999999999986542 2222 234443 335689999999999
Q ss_pred CCccCcHHHHHHH
Q 013602 410 YKPTTDLQTGLKK 422 (439)
Q Consensus 410 ~~p~~~l~e~l~~ 422 (439)
|+|.+++++++..
T Consensus 273 ~~~~~~l~~~~~~ 285 (324)
T TIGR03589 273 LGDYYAILPSISF 285 (324)
T ss_pred CCCeEEEcccccc
Confidence 9999999999863
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=294.98 Aligned_cols=291 Identities=19% Similarity=0.239 Sum_probs=221.3
Q ss_pred CCCCEEEEE----CCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHH--HHHHhhhcCCeEEEEcccCCHHHHHHhh
Q 013602 97 RNGISVLVT----GAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKK--ARQALLERSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlIt----GatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
..+|+|||| |||||||++++++|+++||+|++++|+.......... .....+...+++++.+|+.| +.+++
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~~~~ 126 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD---VKSKV 126 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH---HHhhh
Confidence 345789999 9999999999999999999999999965431110000 00111223468999999987 55555
Q ss_pred cccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCCh
Q 013602 171 DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 250 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~ 250 (439)
....+|+|||+++. +..++.+++++|++.+.. +||++||.++|+.....+..|+++. .|..
T Consensus 127 ~~~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvk-r~V~~SS~~vyg~~~~~p~~E~~~~-~p~~- 187 (378)
T PLN00016 127 AGAGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLK-QFLFCSSAGVYKKSDEPPHVEGDAV-KPKA- 187 (378)
T ss_pred ccCCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCC-EEEEEccHhhcCCCCCCCCCCCCcC-CCcc-
Confidence 44567999999763 134688999999999865 9999999999997666666676544 3322
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 251 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 251 Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
+|.++|.++++ .+++++++||+++|||+... .....++..+..++++.++ +++.+.++|+|++|+|+++
T Consensus 188 ---sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~~-~~~~~~~~~~~~~~~i~~~---g~g~~~~~~i~v~Dva~ai 256 (378)
T PLN00016 188 ---GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNNK-DCEEWFFDRLVRGRPVPIP---GSGIQLTQLGHVKDLASMF 256 (378)
T ss_pred ---hHHHHHHHHHH----cCCCeEEEeceeEECCCCCC-chHHHHHHHHHcCCceeec---CCCCeeeceecHHHHHHHH
Confidence 89999988764 48999999999999997653 3444566777788776654 5788899999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCC---------CCCCcccCCh
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN---------GDVPFTHANI 401 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~---------~~~~~~~~d~ 401 (439)
+.+++++.. .+++||+++++.+|+.|+++.+.+.+|.+..+...+.... .......+|.
T Consensus 257 ~~~l~~~~~------------~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~ 324 (378)
T PLN00016 257 ALVVGNPKA------------AGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASP 324 (378)
T ss_pred HHHhcCccc------------cCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCH
Confidence 999987542 2389999999999999999999999998765432221110 1122334799
Q ss_pred HHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 402 SLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 402 ~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
+|++++|||+|+++++|+|.++++||.++-.
T Consensus 325 ~ka~~~LGw~p~~~l~egl~~~~~~~~~~~~ 355 (378)
T PLN00016 325 RKAKEELGWTPKFDLVEDLKDRYELYFGRGR 355 (378)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999987643
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=284.40 Aligned_cols=261 Identities=25% Similarity=0.290 Sum_probs=202.2
Q ss_pred EEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEE
Q 013602 103 LVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMH 180 (439)
Q Consensus 103 lItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~ 180 (439)
|||||+||||++|+++|+++| ++|+++++..... ............++++|++|.+++.++++++ |+|||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~------~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~--d~V~H 72 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPK------FLKDLQKSGVKEYIQGDITDPESLEEALEGV--DVVFH 72 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccc------cchhhhcccceeEEEeccccHHHHHHHhcCC--ceEEE
Confidence 699999999999999999999 7999999843311 1111112233449999999999999999999 99999
Q ss_pred cccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-CCCC---CCCCCC-CCCCChHHHHH
Q 013602 181 LAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT-KVPF---SEKDRT-DQPASLYAATK 255 (439)
Q Consensus 181 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~-~~~~---~e~~~~-~~p~~~Y~~sK 255 (439)
+|+...... ....+.++++|+.||.|++++|++.+.+ +|||+||.++++.+. ..++ +|+.+. ..+...|+.||
T Consensus 73 ~Aa~~~~~~-~~~~~~~~~vNV~GT~nvl~aa~~~~Vk-rlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK 150 (280)
T PF01073_consen 73 TAAPVPPWG-DYPPEEYYKVNVDGTRNVLEAARKAGVK-RLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESK 150 (280)
T ss_pred eCccccccC-cccHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHH
Confidence 999754322 3556789999999999999999999865 999999999987622 2233 343332 23568999999
Q ss_pred HHHHHHHHHHHh---Hh--CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 256 KAGEEIAHTYNH---IY--GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 256 ~a~E~~~~~~~~---~~--gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
+.+|+++.++.. +. .+.+++|||..||||++.. ....+...+..|...... +++....+|+||+|+|.+|
T Consensus 151 ~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~--~~~~~~~~~~~g~~~~~~---g~~~~~~~~vyV~NvA~ah 225 (280)
T PF01073_consen 151 ALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQR--LVPRLVKMVRSGLFLFQI---GDGNNLFDFVYVENVAHAH 225 (280)
T ss_pred HHHHHHHHhhcccccccccceeEEEEeccEEeCccccc--ccchhhHHHHhcccceee---cCCCceECcEeHHHHHHHH
Confidence 999999999876 22 4899999999999998752 333455556666555444 5777889999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCccc-HHHHHHHHHHHhCCcccc
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP-VSDLVSILERLLKVKAKR 383 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t-~~el~~~l~~~~g~~~~~ 383 (439)
+.+.+...... +.....|+.|+|++++|+. +.|++..+.+.+|.+.+.
T Consensus 226 vlA~~~L~~~~-----~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 226 VLAAQALLEPG-----KPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred HHHHHHhcccc-----ccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 99887654320 1233567999999999999 999999999999987654
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=269.67 Aligned_cols=275 Identities=21% Similarity=0.268 Sum_probs=239.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|||||++|.+|.+|.+.|. .+++|+.++| -.+|++|++.+.+++++.+||+||
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~------------------------~~~Ditd~~~v~~~i~~~~PDvVI 55 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDR------------------------AELDITDPDAVLEVIRETRPDVVI 55 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccC------------------------ccccccChHHHHHHHHhhCCCEEE
Confidence 349999999999999999998 7799999988 118999999999999999999999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+|+...++.++.+++..+.+|..|+.+++++|++.|. ++||+||..||......++.|+|.+ .|.+.||.||+++|
T Consensus 56 n~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga--~lVhiSTDyVFDG~~~~~Y~E~D~~-~P~nvYG~sKl~GE 132 (281)
T COG1091 56 NAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA--RLVHISTDYVFDGEKGGPYKETDTP-NPLNVYGRSKLAGE 132 (281)
T ss_pred ECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC--eEEEeecceEecCCCCCCCCCCCCC-CChhhhhHHHHHHH
Confidence 99999999999999999999999999999999999996 9999999999998888899999988 89999999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchh
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
..++++ +-+..|+|.++|||..+ ..+...|++...+|+.+.+. .++..+.+++.|+|+++..++.....
T Consensus 133 ~~v~~~----~~~~~I~Rtswv~g~~g--~nFv~tml~la~~~~~l~vv-----~Dq~gsPt~~~dlA~~i~~ll~~~~~ 201 (281)
T COG1091 133 EAVRAA----GPRHLILRTSWVYGEYG--NNFVKTMLRLAKEGKELKVV-----DDQYGSPTYTEDLADAILELLEKEKE 201 (281)
T ss_pred HHHHHh----CCCEEEEEeeeeecCCC--CCHHHHHHHHhhcCCceEEE-----CCeeeCCccHHHHHHHHHHHHhcccc
Confidence 999986 56789999999999876 45667788888889988885 57899999999999999999887653
Q ss_pred ccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccccc-ccC---CC-CCCCCcccCChHHHHHHcCCCccC
Q 013602 340 STGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNI-MKL---PR-NGDVPFTHANISLAQRELGYKPTT 414 (439)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~-~~~---~~-~~~~~~~~~d~~k~~~~LG~~p~~ 414 (439)
. ++||+++...+|+.|+++.|.+.++.+..... ... |. ...+.+..+|+.|+++.+|+.|.
T Consensus 202 ~-------------~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~- 267 (281)
T COG1091 202 G-------------GVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLP- 267 (281)
T ss_pred C-------------cEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCc-
Confidence 2 59999998889999999999999996653331 111 22 22344567999999999999887
Q ss_pred cHHHHHHHHHHHH
Q 013602 415 DLQTGLKKFVRWY 427 (439)
Q Consensus 415 ~l~e~l~~~v~~~ 427 (439)
+++++++.+++..
T Consensus 268 ~w~~~l~~~~~~~ 280 (281)
T COG1091 268 EWREALKALLDEL 280 (281)
T ss_pred cHHHHHHHHHhhc
Confidence 8999999988753
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=290.62 Aligned_cols=298 Identities=16% Similarity=0.132 Sum_probs=219.2
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh-------cCCeEEEEcccCCHHHHH
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-------RSGIFIVEGDINDMALLK 167 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-------~~~v~~~~~Dl~d~~~~~ 167 (439)
....+|+||||||+||||++++++|+++|++|+++.|+... .... ..... ..++.++.+|++|.+++.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~----~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~ 123 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQED----KEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLH 123 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHH-HHHhhhccccccCCceEEEEcCCCCHHHHH
Confidence 34678999999999999999999999999999998884321 1111 11100 135889999999999999
Q ss_pred HhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC--cccCCC--CC--CCCCCC
Q 013602 168 KLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSS--SVYGLN--TK--VPFSEK 241 (439)
Q Consensus 168 ~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~--~v~g~~--~~--~~~~e~ 241 (439)
++++++ |.|||+|+...............++|+.++.+++++|++....++||++||. .+||.. .. ..++|+
T Consensus 124 ~~i~~~--d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~ 201 (367)
T PLN02686 124 EAFDGC--AGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEE 201 (367)
T ss_pred HHHHhc--cEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCC
Confidence 999987 9999999975432211222456788999999999999986324599999995 578742 11 235554
Q ss_pred CC-----CCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 242 DR-----TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 242 ~~-----~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.+ +..|.+.|+.+|+++|.+++.+.+++|+++++|||++||||+...... ..+..++.+. ..++ +++
T Consensus 202 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~--~~~~~~~~g~-~~~~---g~g-- 273 (367)
T PLN02686 202 SWSDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNS--TATIAYLKGA-QEML---ADG-- 273 (367)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCC--hhHHHHhcCC-CccC---CCC--
Confidence 32 223567899999999999999988889999999999999997543221 1122345554 4444 233
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPF 396 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~ 396 (439)
.++|+||+|+|++++.+++..... ..+++| +++++++++.|+++.+.+.+|.+......+....++...
T Consensus 274 ~~~~v~V~Dva~A~~~al~~~~~~----------~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~ 342 (367)
T PLN02686 274 LLATADVERLAEAHVCVYEAMGNK----------TAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPAR 342 (367)
T ss_pred CcCeEEHHHHHHHHHHHHhccCCC----------CCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCccc
Confidence 457999999999999999753110 112578 888899999999999999999776654443222677888
Q ss_pred ccCChHHHHHHcCCCccCcHHH
Q 013602 397 THANISLAQRELGYKPTTDLQT 418 (439)
Q Consensus 397 ~~~d~~k~~~~LG~~p~~~l~e 418 (439)
..+|++|++++|||.|+..+++
T Consensus 343 ~~~d~~kl~~~l~~~~~~~~~~ 364 (367)
T PLN02686 343 FELSNKKLSRLMSRTRRCCYDE 364 (367)
T ss_pred ccccHHHHHHHHHHhhhccccc
Confidence 8999999999999999865543
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=278.25 Aligned_cols=316 Identities=21% Similarity=0.271 Sum_probs=249.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+++.+|+||||+||+|.|++++|++++ .+|++++........ ..+.. .+..++++++|+.|..++.+++++
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~-----~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~ 76 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNL-----PAELTGFRSGRVTVILGDLLDANSISNAFQG 76 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCcccccc-----chhhhcccCCceeEEecchhhhhhhhhhccC
Confidence 356799999999999999999999999 899999974431111 11111 367899999999999999999998
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC--CCCCCh
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT--DQPASL 250 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~--~~p~~~ 250 (439)
+ .|+|+|+.........+++..+++|+.||.+++++|++.+.. ++||+||..|..........+++.+ ......
T Consensus 77 ~---~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~-~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~ 152 (361)
T KOG1430|consen 77 A---VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK-RLIYTSSAYVVFGGEPIINGDESLPYPLKHIDP 152 (361)
T ss_pred c---eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCC-EEEEecCceEEeCCeecccCCCCCCCccccccc
Confidence 6 677777765566666789999999999999999999999965 9999999999776555344344333 122369
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 251 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 251 Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
|+.||+.+|.++.+.+...++.+++|||..||||++. .....+...+..|+..... +.++...+|+++++++.++
T Consensus 153 Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~--~~~~~i~~~~~~g~~~f~~---g~~~~~~~~~~~~Nva~ah 227 (361)
T KOG1430|consen 153 YGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDK--RLLPKIVEALKNGGFLFKI---GDGENLNDFTYGENVAWAH 227 (361)
T ss_pred cchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCc--cccHHHHHHHHccCceEEe---eccccccceEEechhHHHH
Confidence 9999999999999998655799999999999999885 4556777878888887776 4668899999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccc-cccccCC----------------CCCC
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK-RNIMKLP----------------RNGD 393 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-~~~~~~~----------------~~~~ 393 (439)
+.+....... .+...|++|+|+++.++...+++..+.+.+|...+ ....|.. ++-.
T Consensus 228 ilA~~aL~~~-------~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~ 300 (361)
T KOG1430|consen 228 ILAARALLDK-------SPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQ 300 (361)
T ss_pred HHHHHHHHhc-------CCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCC
Confidence 9887655521 12356799999999999999999999999998877 2222211 0001
Q ss_pred C-----------CcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 394 V-----------PFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 394 ~-----------~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
. ....++..||+++|||.|..+++|++.+++.|+....+.
T Consensus 301 p~lt~~~v~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~ 351 (361)
T KOG1430|consen 301 PILTRFRVALLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDS 351 (361)
T ss_pred CCcChhheeeeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhc
Confidence 0 123589999999999999999999999999998776543
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=257.00 Aligned_cols=317 Identities=21% Similarity=0.276 Sum_probs=266.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHH-HHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKAR-QALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
+|+.||||-||+-|++|++.|+++|+.|.++.|..+..++..-... .......+++++.+|++|...+.++++.++||-
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdE 81 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDE 81 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCchh
Confidence 5899999999999999999999999999999997765555432111 112233468899999999999999999999999
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~ 256 (439)
|+|+|+++.+..+-+.|+.+.+++..||.+|+++.+..+. .-||...||+..||.....|.+|..+. .|.++|+.+|+
T Consensus 82 IYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPF-yPrSPYAvAKl 160 (345)
T COG1089 82 IYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAKL 160 (345)
T ss_pred heeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCC-CCCCHHHHHHH
Confidence 9999999999889999999999999999999999998764 349999999999999999999999987 89999999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHH---HHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHH
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYF---FFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAA 333 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 333 (439)
-+--++..+++.+|+-.+.=...+--+|.+....... ..+..+..|..-.++. |+-+..|||-|..|.++++..+
T Consensus 161 Ya~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~l--GNldAkRDWG~A~DYVe~mwlm 238 (345)
T COG1089 161 YAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYL--GNLDAKRDWGHAKDYVEAMWLM 238 (345)
T ss_pred HHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEe--ccccccccccchHHHHHHHHHH
Confidence 9999999999999987776666666677666554433 3445566777776664 7899999999999999999999
Q ss_pred HhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccc----------------cc----cCCCCCC
Q 013602 334 LDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN----------------IM----KLPRNGD 393 (439)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~----------------~~----~~~~~~~ 393 (439)
++++.. +.|.|+.|+..|++|++++..+..|.+.... .+ ...++.+
T Consensus 239 LQq~~P--------------ddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaE 304 (345)
T COG1089 239 LQQEEP--------------DDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAE 304 (345)
T ss_pred HccCCC--------------CceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchh
Confidence 998774 6899999999999999999999999665532 11 1124556
Q ss_pred CCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 394 VPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 394 ~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
......|.+||+++|||+|.++++|-+++|+++..+...
T Consensus 305 V~~Llgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~~~ 343 (345)
T COG1089 305 VDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLEAAR 343 (345)
T ss_pred hhhhcCCHHHHHHHcCCccccCHHHHHHHHHHHHHHHhh
Confidence 666778999999999999999999999999999887654
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=264.89 Aligned_cols=233 Identities=31% Similarity=0.513 Sum_probs=203.4
Q ss_pred EEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEEc
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHL 181 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~~ 181 (439)
|||||||||||++++++|+++|+.|+.+.|.... ..... ...++.++.+|+.|.+.+.++++...+|+|||+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~-----~~~~~---~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~ 72 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNS-----ESFEE---KKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHL 72 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTG-----GHHHH---HHTTEEEEESETTSHHHHHHHHHHHTESEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccc-----ccccc---ccceEEEEEeeccccccccccccccCceEEEEe
Confidence 7999999999999999999999999999984431 11011 112899999999999999999999999999999
Q ss_pred ccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 013602 182 AAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEI 261 (439)
Q Consensus 182 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~ 261 (439)
|+.........++...++.|+.++.+++++|++.+. +++|++||..+|+.....+++|+++. .|.+.|+.+|..+|.+
T Consensus 73 a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS~~~y~~~~~~~~~e~~~~-~~~~~Y~~~K~~~e~~ 150 (236)
T PF01370_consen 73 AAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSSASVYGDPDGEPIDEDSPI-NPLSPYGASKRAAEEL 150 (236)
T ss_dssp BSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGGTSSSSSSBETTSGC-CHSSHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc-cccccccccccccccc
Confidence 998543333467888999999999999999999997 59999999999999877788888877 7889999999999999
Q ss_pred HHHHHhHhCCcEEEEeeccccCCC---CCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 262 AHTYNHIYGLSLTGLRFFTVYGPW---GRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 262 ~~~~~~~~gi~~~ilrpg~v~G~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
++.+.++++++++++||++||||+ ......+..++..+.+++++.++ +++++.++|+|++|+|++++.+++++.
T Consensus 151 ~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~D~a~~~~~~~~~~~ 227 (236)
T PF01370_consen 151 LRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIP---GDGSQVRDFIHVDDLAEAIVAALENPK 227 (236)
T ss_dssp HHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEE---STSSCEEEEEEHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccccccccccccccccccccccccchhhHHhhcCCccccc---CCCCCccceEEHHHHHHHHHHHHhCCC
Confidence 999999889999999999999999 55567888999999999998777 688999999999999999999999888
Q ss_pred hccCCCCCccCCCCCcEEEec
Q 013602 339 KSTGSGGKKRGRAQLRVFNLG 359 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~ 359 (439)
. .+++|||+
T Consensus 228 ~------------~~~~yNig 236 (236)
T PF01370_consen 228 A------------AGGIYNIG 236 (236)
T ss_dssp T------------TTEEEEES
T ss_pred C------------CCCEEEeC
Confidence 2 23899985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=244.45 Aligned_cols=295 Identities=19% Similarity=0.249 Sum_probs=241.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+|+|||||++|.+|++|.+.+...|. +-.++.- .-.+|+++.++.+.+|+..+|.
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~-----------------------skd~DLt~~a~t~~lF~~ekPt 57 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIG-----------------------SKDADLTNLADTRALFESEKPT 57 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEec-----------------------cccccccchHHHHHHHhccCCc
Confidence 37899999999999999999999885 2222211 1247999999999999999999
Q ss_pred EEEEcccccCccc-cccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC----CCCCCCChH
Q 013602 177 HVMHLAAQAGVRY-AMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKD----RTDQPASLY 251 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~-~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~----~~~~p~~~Y 251 (439)
+|||.|+..+.-+ ....+.+.++.|+....|++..|-++|+. +++++-|.++|.+....|++|.. ++.+....|
T Consensus 58 hVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~-K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gY 136 (315)
T KOG1431|consen 58 HVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVK-KVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGY 136 (315)
T ss_pred eeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchh-hhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHH
Confidence 9999999866543 34566789999999999999999999976 99999999999999999999864 444456789
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCC----hHHHHHH----HHHcCC-CCceeecCCCCcceeeeee
Q 013602 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDM----AYFFFTR----DILNRK-SIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~----~~~~~~~----~~~~g~-~~~~~~~~~~~~~~~~~i~ 322 (439)
+.+|....-..+.|+.++|-..+.+-|.+||||.++... .++.++. +...|. .+.+| |+|...|.|+|
T Consensus 137 syAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~Vw---GsG~PlRqFiy 213 (315)
T KOG1431|consen 137 SYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVW---GSGSPLRQFIY 213 (315)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEe---cCCChHHHHhh
Confidence 999988777779999999999999999999999886432 3333333 233343 56677 79999999999
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC--cccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCC
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS--PVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHAN 400 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d 400 (439)
++|+|++++++++.-... +..+++.++ .+|++|+++++.+..+.+.+..+... ..+......+|
T Consensus 214 s~DLA~l~i~vlr~Y~~v-------------Epiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~Dtt-K~DGq~kKtas 279 (315)
T KOG1431|consen 214 SDDLADLFIWVLREYEGV-------------EPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTT-KSDGQFKKTAS 279 (315)
T ss_pred HhHHHHHHHHHHHhhcCc-------------cceEeccCccceeEHHHHHHHHHHHhCCCceEEeecc-CCCCCcccccc
Confidence 999999999999977644 567888876 89999999999999999888766543 33444556799
Q ss_pred hHHHHHHcCCCccCc-HHHHHHHHHHHHHHHccCCC
Q 013602 401 ISLAQRELGYKPTTD-LQTGLKKFVRWYLSYYAGGK 435 (439)
Q Consensus 401 ~~k~~~~LG~~p~~~-l~e~l~~~v~~~~~~~~~~~ 435 (439)
++|+ +.|+|.|+.+ ++++|.++++||.+|++..+
T Consensus 280 nsKL-~sl~pd~~ft~l~~ai~~t~~Wy~~Ny~qar 314 (315)
T KOG1431|consen 280 NSKL-RSLLPDFKFTPLEQAISETVQWYLDNYEQAR 314 (315)
T ss_pred hHHH-HHhCCCcccChHHHHHHHHHHHHHHhHHhhc
Confidence 9999 5689999965 99999999999999998654
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=261.11 Aligned_cols=277 Identities=19% Similarity=0.212 Sum_probs=210.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|+|||||||||++++++|+++|++|++++|+.+ ........+++++.+|++|++++.++++++ |+||
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~---------~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~--d~Vi 69 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLR---------KASFLKEWGAELVYGDLSLPETLPPSFKGV--TAII 69 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChH---------HhhhHhhcCCEEEECCCCCHHHHHHHHCCC--CEEE
Confidence 58999999999999999999999999999999432 111112347999999999999999999987 9999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+++.. ..++....++|+.++.+++++|++++.. +||++||.+... .+..+|..+|.++|
T Consensus 70 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~Ss~~~~~--------------~~~~~~~~~K~~~e 129 (317)
T CHL00194 70 DASTSR-----PSDLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFSILNAEQ--------------YPYIPLMKLKSDIE 129 (317)
T ss_pred ECCCCC-----CCCccchhhhhHHHHHHHHHHHHHcCCC-EEEEeccccccc--------------cCCChHHHHHHHHH
Confidence 987642 1345567889999999999999999865 999999965321 12356899999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchh
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
.++++ ++++++++||+.+|+.. +..+...++.+.+... .++...++|+|++|+|++++.+++.+..
T Consensus 130 ~~l~~----~~l~~tilRp~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~~~~~i~v~Dva~~~~~~l~~~~~ 195 (317)
T CHL00194 130 QKLKK----SGIPYTIFRLAGFFQGL------ISQYAIPILEKQPIWI----TNESTPISYIDTQDAAKFCLKSLSLPET 195 (317)
T ss_pred HHHHH----cCCCeEEEeecHHhhhh------hhhhhhhhccCCceEe----cCCCCccCccCHHHHHHHHHHHhcCccc
Confidence 98764 59999999999888631 1112222333443333 3456778999999999999999976542
Q ss_pred ccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCC--------------------------CC
Q 013602 340 STGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN--------------------------GD 393 (439)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~--------------------------~~ 393 (439)
.+++||+++++++|+.|+++.+.+.+|.+..+...|.... ..
T Consensus 196 ------------~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (317)
T CHL00194 196 ------------KNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNT 263 (317)
T ss_pred ------------cCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhc
Confidence 2389999999999999999999999998766655442100 00
Q ss_pred CCcccCChHHHHHHcCCCcc--CcHHHHHHHHHHHHHHHccC
Q 013602 394 VPFTHANISLAQRELGYKPT--TDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 394 ~~~~~~d~~k~~~~LG~~p~--~~l~e~l~~~v~~~~~~~~~ 433 (439)
.....++.+++++.||+.|. +++++++++++...+++.+.
T Consensus 264 ~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 305 (317)
T CHL00194 264 SNNFSSSMAELYKIFKIDPNELISLEDYFQEYFERILKRLKD 305 (317)
T ss_pred CCCcCCCHHHHHHHhCCChhhhhhHHHHHHHHHHHHHHHHHh
Confidence 01123567788999999984 68999999998888776543
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-31 Score=252.00 Aligned_cols=273 Identities=15% Similarity=0.219 Sum_probs=203.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
..|+||||||+||||++|+++|+++|++|+... .|+.|.+.+...++..++|+
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~---------------------------~~~~~~~~v~~~l~~~~~D~ 60 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS---------------------------GRLENRASLEADIDAVKPTH 60 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEec---------------------------CccCCHHHHHHHHHhcCCCE
Confidence 447899999999999999999999999987542 24556677777777778899
Q ss_pred EEEcccccCcc---ccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC------CCCCCCCCCCCCCC
Q 013602 178 VMHLAAQAGVR---YAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT------KVPFSEKDRTDQPA 248 (439)
Q Consensus 178 Vi~~Ag~~~~~---~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~------~~~~~e~~~~~~p~ 248 (439)
|||+||..+.. ..+.++...+++|+.|+.+|+++|++.+. +++++||.++|+... ..++.|++.+..+.
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv--~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~ 138 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGL--VLTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTG 138 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEecceEeCCCCCCCcccCCCCCcCCCCCCCC
Confidence 99999986432 24567889999999999999999999985 567778888887432 22467777664566
Q ss_pred ChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHH
Q 013602 249 SLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVK 328 (439)
Q Consensus 249 ~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~ 328 (439)
+.|+.+|+++|.+++.+.+ ..++|++.++|++.. ....++..++.+..+... + .+|+|++|++.
T Consensus 139 s~Yg~sK~~~E~~~~~y~~-----~~~lr~~~~~~~~~~---~~~~fi~~~~~~~~~~~~-----~---~s~~yv~D~v~ 202 (298)
T PLN02778 139 SFYSKTKAMVEELLKNYEN-----VCTLRVRMPISSDLS---NPRNFITKITRYEKVVNI-----P---NSMTILDELLP 202 (298)
T ss_pred CchHHHHHHHHHHHHHhhc-----cEEeeecccCCcccc---cHHHHHHHHHcCCCeeEc-----C---CCCEEHHHHHH
Confidence 8999999999999998753 467888887876432 123467788888765443 1 26999999999
Q ss_pred HHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccc---ccccCCC--CCCCCcccCChHH
Q 013602 329 GCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR---NIMKLPR--NGDVPFTHANISL 403 (439)
Q Consensus 329 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~---~~~~~~~--~~~~~~~~~d~~k 403 (439)
+++.+++... +++||+++++++|+.|+++.+.+.++...+. ...+... ..+.....+|.+|
T Consensus 203 al~~~l~~~~--------------~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k 268 (298)
T PLN02778 203 ISIEMAKRNL--------------TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTK 268 (298)
T ss_pred HHHHHHhCCC--------------CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHH
Confidence 9999986422 1699999999999999999999999964321 1111100 0111122689999
Q ss_pred HHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 404 AQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 404 ~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
+++.++-.+. ..+++++..++-.+.+
T Consensus 269 ~~~~~~~~~~-~~~~~~~~~~~~~~~~ 294 (298)
T PLN02778 269 LKREFPELLP-IKESLIKYVFEPNKKT 294 (298)
T ss_pred HHHhcccccc-hHHHHHHHHHHHHHhh
Confidence 9998886444 4678888877776444
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=279.88 Aligned_cols=259 Identities=19% Similarity=0.246 Sum_probs=197.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|+||||+||||++++++|+++|++|++++|+... . ...++.++.+|++|.+++.++++++ |+||
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~-----------~-~~~~v~~v~gDL~D~~~l~~al~~v--D~VV 66 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPD-----------S-WPSSADFIAADIRDATAVESAMTGA--DVVA 66 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchh-----------h-cccCceEEEeeCCCHHHHHHHHhCC--CEEE
Confidence 579999999999999999999999999999984210 0 1236889999999999999999876 9999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+|+.... .+++|+.|+.++++++++.+.. +||++||.. |.++|
T Consensus 67 HlAa~~~~---------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~--------------------------K~aaE 110 (854)
T PRK05865 67 HCAWVRGR---------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH--------------------------QPRVE 110 (854)
T ss_pred ECCCcccc---------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH--------------------------HHHHH
Confidence 99986321 4689999999999999998854 999999742 88889
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchh
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
.++.+ ++++++++||++||||+.. .++..++. .+.+. .+++...++|+|++|+|++++.+++....
T Consensus 111 ~ll~~----~gl~~vILRp~~VYGP~~~------~~i~~ll~---~~v~~-~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~ 176 (854)
T PRK05865 111 QMLAD----CGLEWVAVRCALIFGRNVD------NWVQRLFA---LPVLP-AGYADRVVQVVHSDDAQRLLVRALLDTVI 176 (854)
T ss_pred HHHHH----cCCCEEEEEeceEeCCChH------HHHHHHhc---Cceec-cCCCCceEeeeeHHHHHHHHHHHHhCCCc
Confidence 87754 5999999999999999632 23333332 22321 13456678999999999999999864321
Q ss_pred ccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhC---CccccccccCCC-CCCCCcccCChHHHHHHcCCCccCc
Q 013602 340 STGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLK---VKAKRNIMKLPR-NGDVPFTHANISLAQRELGYKPTTD 415 (439)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g---~~~~~~~~~~~~-~~~~~~~~~d~~k~~~~LG~~p~~~ 415 (439)
.+++|||++++.+|+.|+++.+.+... .+.......... ........+|++|+++.|||+|+++
T Consensus 177 ------------~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~s 244 (854)
T PRK05865 177 ------------DSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWN 244 (854)
T ss_pred ------------CCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCC
Confidence 127999999999999999999887542 111100000000 0111233589999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCC
Q 013602 416 LQTGLKKFVRWYLSYYAGG 434 (439)
Q Consensus 416 l~e~l~~~v~~~~~~~~~~ 434 (439)
++++|+++++||+.+..-+
T Consensus 245 LeeGL~dti~~~r~ri~~~ 263 (854)
T PRK05865 245 AEECLEDFTLAVRGRIGLG 263 (854)
T ss_pred HHHHHHHHHHHHHhhcccc
Confidence 9999999999998876544
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=249.91 Aligned_cols=281 Identities=16% Similarity=0.105 Sum_probs=196.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
.+++||||||+||||++++++|+++|++|+++.|+..... ......... ...+++++.+|++|.+++.+++.++ |
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~--~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~--d 80 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETE--IEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGC--S 80 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhh--HHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCC--C
Confidence 4679999999999999999999999999999998432111 000011111 1246889999999999999999987 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCccc--CCC---CCCCCCCCCCCCC-----
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVY--GLN---TKVPFSEKDRTDQ----- 246 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~--g~~---~~~~~~e~~~~~~----- 246 (439)
.|+|.++.... ...+.+..+++|+.|+.+++++|.+....++||++||.+.+ +.. ...+++|+++...
T Consensus 81 ~v~~~~~~~~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~ 158 (297)
T PLN02583 81 GLFCCFDPPSD--YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRK 158 (297)
T ss_pred EEEEeCccCCc--ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhh
Confidence 99998764321 11245688999999999999999886434599999997664 311 1234566554211
Q ss_pred CCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHH
Q 013602 247 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDI 326 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dv 326 (439)
+...|+.||..+|++++++.++.|+++++|||++||||+..... ..+.+.. ..+ +...++|+||+|+
T Consensus 159 ~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~-------~~~~~~~-~~~-----~~~~~~~v~V~Dv 225 (297)
T PLN02583 159 FKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN-------PYLKGAA-QMY-----ENGVLVTVDVNFL 225 (297)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch-------hhhcCCc-ccC-----cccCcceEEHHHH
Confidence 12379999999999999998777999999999999999764321 1223322 222 1234679999999
Q ss_pred HHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHH
Q 013602 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQR 406 (439)
Q Consensus 327 a~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 406 (439)
|++++.+++.+... +.|++.++......++++++.+.++.- ++...............++++|+ +
T Consensus 226 a~a~~~al~~~~~~-------------~r~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~k~-~ 290 (297)
T PLN02583 226 VDAHIRAFEDVSSY-------------GRYLCFNHIVNTEEDAVKLAQMLSPLI-PSPPPYEMQGSEVYQQRIRNKKL-N 290 (297)
T ss_pred HHHHHHHhcCcccC-------------CcEEEecCCCccHHHHHHHHHHhCCCC-CCCCcccccCCCccccccChHHH-H
Confidence 99999999855421 468887765555688999999998842 22111010011223356788888 5
Q ss_pred HcCCCc
Q 013602 407 ELGYKP 412 (439)
Q Consensus 407 ~LG~~p 412 (439)
+||++.
T Consensus 291 ~l~~~~ 296 (297)
T PLN02583 291 KLMEDF 296 (297)
T ss_pred HhCccc
Confidence 689863
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=248.38 Aligned_cols=279 Identities=21% Similarity=0.196 Sum_probs=195.2
Q ss_pred EEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEEc
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHL 181 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~~ 181 (439)
||||||+||||+++++.|+++|++|++++|+........ ...+ .|+.+ +.+.+.+.++ |+|||+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~----~~~~~-~~~~~~~~~~--D~Vvh~ 64 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK---------WEGY----KPWAP-LAESEALEGA--DAVINL 64 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc---------ceee----ecccc-cchhhhcCCC--CEEEEC
Confidence 699999999999999999999999999999654321110 0011 12222 3445555655 999999
Q ss_pred ccccCcc--ccccChhHHHHHHHHHHHHHHHHHHhcCCC-CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 182 AAQAGVR--YAMQNPNSYVHSNIAGLVSLLEVCKNANPQ-PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 182 Ag~~~~~--~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~-~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
||..... .....+...+++|+.++.++++++++.+.. .+||++||.++||.....++.|+++. .+.+.|+..+...
T Consensus 65 a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~-~~~~~~~~~~~~~ 143 (292)
T TIGR01777 65 AGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSP-AGDDFLAELCRDW 143 (292)
T ss_pred CCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCC-CCCChHHHHHHHH
Confidence 9964321 122344578899999999999999998863 36777787889997666677777644 4455677777777
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
|.....+. +.+++++++||+.||||.+. ....+........... + ++++..++|+|++|+|+++..+++.+.
T Consensus 144 e~~~~~~~-~~~~~~~ilR~~~v~G~~~~---~~~~~~~~~~~~~~~~-~---g~~~~~~~~i~v~Dva~~i~~~l~~~~ 215 (292)
T TIGR01777 144 EEAAQAAE-DLGTRVVLLRTGIVLGPKGG---ALAKMLPPFRLGLGGP-L---GSGRQWFSWIHIEDLVQLILFALENAS 215 (292)
T ss_pred HHHhhhch-hcCCceEEEeeeeEECCCcc---hhHHHHHHHhcCcccc-c---CCCCcccccEeHHHHHHHHHHHhcCcc
Confidence 77766544 35899999999999999643 2222222222221111 2 577899999999999999999997643
Q ss_pred hccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCC--------CC-CCCcccCChHHHHHHcC
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR--------NG-DVPFTHANISLAQRELG 409 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~--------~~-~~~~~~~d~~k~~~~LG 409 (439)
. .++||+++++++|+.|+++.+.+.+|.+.... .|... .. -.....++.+|++ ++|
T Consensus 216 ~-------------~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 280 (292)
T TIGR01777 216 I-------------SGPVNATAPEPVRNKEFAKALARALHRPAFFP-VPAFVLRALLGEMADLLLKGQRVLPEKLL-EAG 280 (292)
T ss_pred c-------------CCceEecCCCccCHHHHHHHHHHHhCCCCcCc-CCHHHHHHHhchhhHHHhCCcccccHHHH-hcC
Confidence 2 16899999999999999999999999754322 22110 00 0123346788886 599
Q ss_pred CCccC-cHHHHH
Q 013602 410 YKPTT-DLQTGL 420 (439)
Q Consensus 410 ~~p~~-~l~e~l 420 (439)
|+|.+ +++|++
T Consensus 281 ~~~~~~~~~~~~ 292 (292)
T TIGR01777 281 FQFQYPDLDEAL 292 (292)
T ss_pred CeeeCcChhhcC
Confidence 99998 488764
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=260.14 Aligned_cols=266 Identities=19% Similarity=0.230 Sum_probs=196.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC---CeEEEEECCCCCCChhHHHH-H--H-Hh--------------hhcCCeEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG---DGVLGLDNFNDYYDPSLKKA-R--Q-AL--------------LERSGIFI 155 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~-~--~-~~--------------~~~~~v~~ 155 (439)
.++|+|||||||||||++++..|++.+ .+|+++.|............ . . .. ....++++
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~ 88 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP 88 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence 578999999999999999999999875 37899999766443322211 0 0 00 01257999
Q ss_pred EEcccC-------CHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 156 VEGDIN-------DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 156 ~~~Dl~-------d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
+.+|++ |.+.++++++++ |+|||+||.... ..++....++|+.||.+++++|++.+..++||++||++
T Consensus 89 i~GDl~~~~LGLs~~~~~~~l~~~v--D~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~ 163 (491)
T PLN02996 89 VPGDISYDDLGVKDSNLREEMWKEI--DIVVNLAATTNF---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAY 163 (491)
T ss_pred EecccCCcCCCCChHHHHHHHHhCC--CEEEECccccCC---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeE
Confidence 999998 555677888766 999999997653 25678899999999999999999864345999999999
Q ss_pred ccCCCCC----CCCCCCC-C---------------------------------------------CCCCCChHHHHHHHH
Q 013602 229 VYGLNTK----VPFSEKD-R---------------------------------------------TDQPASLYAATKKAG 258 (439)
Q Consensus 229 v~g~~~~----~~~~e~~-~---------------------------------------------~~~p~~~Y~~sK~a~ 258 (439)
+||.... .++++.. . ...+.+.|+.||+++
T Consensus 164 vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~a 243 (491)
T PLN02996 164 VCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMG 243 (491)
T ss_pred EecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHH
Confidence 9986431 1222100 0 011236799999999
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCCh-------HHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHH
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMA-------YFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 331 (439)
|.++.+++. +++++++||++||||+..+... ...++..+.+|....++ +++++.+||+||+|++.+++
T Consensus 244 E~lv~~~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~---gdg~~~~D~v~Vddvv~a~l 318 (491)
T PLN02996 244 EMLLGNFKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFL---ADPNSVLDVIPADMVVNAMI 318 (491)
T ss_pred HHHHHHhcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEe---cCCCeecceecccHHHHHHH
Confidence 999988754 8999999999999998765321 12333334555555555 68899999999999999999
Q ss_pred HHHhhchhccCCCCCccCCCCCcEEEecCC--CcccHHHHHHHHHHHhCCcc
Q 013602 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNT--SPVPVSDLVSILERLLKVKA 381 (439)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~t~~el~~~l~~~~g~~~ 381 (439)
.++...... ...+++||++++ .++|+.|+++.+.+.++..+
T Consensus 319 ~a~~~~~~~---------~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p 361 (491)
T PLN02996 319 VAMAAHAGG---------QGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP 361 (491)
T ss_pred HHHHHhhcc---------CCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence 998753210 012379999998 89999999999999887443
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=267.56 Aligned_cols=303 Identities=19% Similarity=0.214 Sum_probs=215.2
Q ss_pred CEEEEECCCChHHHHHHHHHH--hCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH------HHHHHhhc
Q 013602 100 ISVLVTGAAGFVGTHVSAALK--RRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM------ALLKKLFD 171 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~--~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~------~~~~~~~~ 171 (439)
|+|||||||||||++++++|+ ++|++|++++|+... .............+++++.+|++|+ +.++++ +
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~---~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~ 76 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL---SRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL-G 76 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH---HHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh-c
Confidence 589999999999999999999 589999999993321 1000001111225799999999984 456665 5
Q ss_pred ccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC--CCCCC
Q 013602 172 VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT--DQPAS 249 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~--~~p~~ 249 (439)
++ |+|||+||..... .+.....++|+.|+.+++++|++.+.. +||++||.++||.... ++.|++.. ..+.+
T Consensus 77 ~~--D~Vih~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~~SS~~v~g~~~~-~~~e~~~~~~~~~~~ 149 (657)
T PRK07201 77 DI--DHVVHLAAIYDLT---ADEEAQRAANVDGTRNVVELAERLQAA-TFHHVSSIAVAGDYEG-VFREDDFDEGQGLPT 149 (657)
T ss_pred CC--CEEEECceeecCC---CCHHHHHHHHhHHHHHHHHHHHhcCCC-eEEEEeccccccCccC-ccccccchhhcCCCC
Confidence 55 9999999975432 345678899999999999999998854 9999999999986432 34444322 23457
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCC-------hHHHHHHHHHcC-CCCceeecCCCCcceeeee
Q 013602 250 LYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDM-------AYFFFTRDILNR-KSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~-------~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~i 321 (439)
.|+.+|+++|.++++. .|++++++||++||||...... .+..++..+... ...+.+ +.+....+++
T Consensus 150 ~Y~~sK~~~E~~~~~~---~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v 223 (657)
T PRK07201 150 PYHRTKFEAEKLVREE---CGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMV---GPDGGRTNIV 223 (657)
T ss_pred chHHHHHHHHHHHHHc---CCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccc---cCCCCeeeee
Confidence 8999999999998752 4899999999999998643211 111122222111 112222 3455678999
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcc---ccccccCC------C--
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKA---KRNIMKLP------R-- 390 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~---~~~~~~~~------~-- 390 (439)
|++|+++++..+++.+.. .+++||+++++++++.|+++.+.+.+|.+. .....|.. .
T Consensus 224 ~vddva~ai~~~~~~~~~------------~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~ 291 (657)
T PRK07201 224 PVDYVADALDHLMHKDGR------------DGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAAL 291 (657)
T ss_pred eHHHHHHHHHHHhcCcCC------------CCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhc
Confidence 999999999998874332 238999999999999999999999999766 33222211 0
Q ss_pred -------------CC--------CCCcccCChHHHHHHc---CCCccCcHHHHHHHHHHHHHHHcc
Q 013602 391 -------------NG--------DVPFTHANISLAQREL---GYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 391 -------------~~--------~~~~~~~d~~k~~~~L---G~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
.+ -.....+|++++++.| |+.+. .+++.+.+.++||.++.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~~ 356 (657)
T PRK07201 292 GPVRRLRNAVATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHLD 356 (657)
T ss_pred chhhHHHHHHHHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcCC
Confidence 00 0112357899999888 66544 689999999999988864
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=234.70 Aligned_cols=239 Identities=26% Similarity=0.355 Sum_probs=184.7
Q ss_pred EEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhh---hcCCeE----EEEcccCCHHHHHHhhccc
Q 013602 102 VLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALL---ERSGIF----IVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~----~~~~Dl~d~~~~~~~~~~~ 173 (439)
||||||+|.||++|+++|++.+ .++++++|++. ..-....+.. ...++. ++.+|++|.+.+.++++..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~----~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDEN----KLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HH----HHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChh----HHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc
Confidence 7999999999999999999998 58999999332 1122222221 223454 4588999999999999999
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAA 253 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~ 253 (439)
+||+|||.|+.-++...+++|.+.+++|+.||.|++++|.+++.. +||++||.... .|.+.||+
T Consensus 77 ~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~-~~v~ISTDKAv---------------~PtnvmGa 140 (293)
T PF02719_consen 77 KPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVE-RFVFISTDKAV---------------NPTNVMGA 140 (293)
T ss_dssp T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-S-EEEEEEECGCS---------------S--SHHHH
T ss_pred CCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEccccccC---------------CCCcHHHH
Confidence 999999999998888899999999999999999999999999966 99999996542 68899999
Q ss_pred HHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 254 TKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 254 sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
||+.+|.++..++... +.++++||+|+|.|..+ +.++.|..++.+|+++++. +++.+|-|+.+++++..+
T Consensus 141 tKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~G---SVip~F~~Qi~~g~PlTvT----~p~mtRffmti~EAv~Lv 213 (293)
T PF02719_consen 141 TKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRG---SVIPLFKKQIKNGGPLTVT----DPDMTRFFMTIEEAVQLV 213 (293)
T ss_dssp HHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTT---SCHHHHHHHHHTTSSEEEC----ETT-EEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCC---cHHHHHHHHHHcCCcceeC----CCCcEEEEecHHHHHHHH
Confidence 9999999999998865 68999999999999764 4889999999999999995 789999999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCc
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVK 380 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~ 380 (439)
+.+...... |++|.+--|+++++.|+++.+.+..|.+
T Consensus 214 l~a~~~~~~-------------geifvl~mg~~v~I~dlA~~~i~~~g~~ 250 (293)
T PF02719_consen 214 LQAAALAKG-------------GEIFVLDMGEPVKILDLAEAMIELSGLE 250 (293)
T ss_dssp HHHHHH--T-------------TEEEEE---TCEECCCHHHHHHHHTT-E
T ss_pred HHHHhhCCC-------------CcEEEecCCCCcCHHHHHHHHHhhcccc
Confidence 999876542 3899998899999999999999999854
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=242.51 Aligned_cols=242 Identities=22% Similarity=0.277 Sum_probs=212.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhh---hcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
..||+||||||+|-||+++++++++.+ .++++++|++.+ ......+.. ....+.++-+|+.|.+.+.+++++
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~----~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~ 323 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYK----LYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEG 323 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHH----HHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhc
Confidence 678999999999999999999999998 478888884432 122222222 236889999999999999999999
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHH
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYA 252 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~ 252 (439)
.++|+|||.|+.-+++..+.+|.+.+.+|+.||.|++++|.+.+.. +||.+||... -.|.+.||
T Consensus 324 ~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~-~~V~iSTDKA---------------V~PtNvmG 387 (588)
T COG1086 324 HKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVK-KFVLISTDKA---------------VNPTNVMG 387 (588)
T ss_pred CCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCC-EEEEEecCcc---------------cCCchHhh
Confidence 9999999999999999999999999999999999999999999976 9999999653 26889999
Q ss_pred HHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHH
Q 013602 253 ATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329 (439)
Q Consensus 253 ~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a 329 (439)
+||..+|..+..++.+. +.+++++|.|||.|..+ +.++.|.+++.+|+++++. +++.+|-|+.+.|.++.
T Consensus 388 aTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG---SViPlFk~QI~~GgplTvT----dp~mtRyfMTI~EAv~L 460 (588)
T COG1086 388 ATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG---SVIPLFKKQIAEGGPLTVT----DPDMTRFFMTIPEAVQL 460 (588)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCC---CCHHHHHHHHHcCCCcccc----CCCceeEEEEHHHHHHH
Confidence 99999999999998753 38999999999999865 4888999999999999996 89999999999999999
Q ss_pred HHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhC
Q 013602 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLK 378 (439)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g 378 (439)
++++..... .|++|-+-.|++++..|+++.+-++.|
T Consensus 461 VlqA~a~~~-------------gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 461 VLQAGAIAK-------------GGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHHHHhhcC-------------CCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 999987643 238999999999999999999999998
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=245.74 Aligned_cols=246 Identities=17% Similarity=0.163 Sum_probs=190.1
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
...+++||||||||+||++++++|+++|++|++++|+........... .......+++++.+|++|++++.+++++.
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~-~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKE-DTKKELPGAEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhh-HHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence 357889999999999999999999999999999999654321110000 01112357999999999999999999864
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAA 253 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~ 253 (439)
++|+||||++... ......+++|+.++.++++++++.+.. +||++||.++++ |...|..
T Consensus 136 ~~D~Vi~~aa~~~-----~~~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iSS~~v~~---------------p~~~~~~ 194 (390)
T PLN02657 136 PVDVVVSCLASRT-----GGVKDSWKIDYQATKNSLDAGREVGAK-HFVLLSAICVQK---------------PLLEFQR 194 (390)
T ss_pred CCcEEEECCccCC-----CCCccchhhHHHHHHHHHHHHHHcCCC-EEEEEeeccccC---------------cchHHHH
Confidence 5699999998522 112345788999999999999999864 999999988752 3457899
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee-eeeeHHHHHHHHHH
Q 013602 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR-DFTYIDDIVKGCLA 332 (439)
Q Consensus 254 sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~i~v~Dva~a~~~ 332 (439)
+|...|..+.+ ...++++++|||+.+||+.. .++..+..|+++.++ +++...+ ++||++|+|++++.
T Consensus 195 sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~~-------~~~~~~~~g~~~~~~---GdG~~~~~~~I~v~DlA~~i~~ 262 (390)
T PLN02657 195 AKLKFEAELQA--LDSDFTYSIVRPTAFFKSLG-------GQVEIVKDGGPYVMF---GDGKLCACKPISEADLASFIAD 262 (390)
T ss_pred HHHHHHHHHHh--ccCCCCEEEEccHHHhcccH-------HHHHhhccCCceEEe---cCCcccccCceeHHHHHHHHHH
Confidence 99999998876 23599999999999997522 244556677776665 4666544 68999999999999
Q ss_pred HHhhchhccCCCCCccCCCCCcEEEecCC-CcccHHHHHHHHHHHhCCcccccccc
Q 013602 333 ALDTAEKSTGSGGKKRGRAQLRVFNLGNT-SPVPVSDLVSILERLLKVKAKRNIMK 387 (439)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~t~~el~~~l~~~~g~~~~~~~~~ 387 (439)
++..+.. .+++|||+++ +.+|+.|+++++.+.+|.+.++..+|
T Consensus 263 ~~~~~~~------------~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp 306 (390)
T PLN02657 263 CVLDESK------------INKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVP 306 (390)
T ss_pred HHhCccc------------cCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcC
Confidence 9875432 2389999985 68999999999999999876665544
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-27 Score=231.10 Aligned_cols=258 Identities=24% Similarity=0.296 Sum_probs=185.2
Q ss_pred EEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHh----h-----hcCCeEEEEcccCCH------
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQAL----L-----ERSGIFIVEGDINDM------ 163 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~----~-----~~~~v~~~~~Dl~d~------ 163 (439)
+|||||||||||++++++|+++| ++|+++.|..+.... ..+..... . ...++.++.+|++++
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~ 79 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHA-MERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD 79 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHH-HHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence 58999999999999999999999 679999995432110 00111000 0 015799999999854
Q ss_pred HHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 164 ALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 164 ~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
+.+.++.+.+ |+||||||.... ........++|+.|+.+++++|.+.+.. +||++||.++|+.....+..|++.
T Consensus 80 ~~~~~~~~~~--d~vih~a~~~~~---~~~~~~~~~~nv~g~~~ll~~a~~~~~~-~~v~iSS~~v~~~~~~~~~~~~~~ 153 (367)
T TIGR01746 80 AEWERLAENV--DTIVHNGALVNW---VYPYSELRAANVLGTREVLRLAASGRAK-PLHYVSTISVLAAIDLSTVTEDDA 153 (367)
T ss_pred HHHHHHHhhC--CEEEeCCcEecc---CCcHHHHhhhhhHHHHHHHHHHhhCCCc-eEEEEccccccCCcCCCCcccccc
Confidence 4566676665 999999997542 2345677889999999999999988754 799999999998644333333332
Q ss_pred C----CCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC----CChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 244 T----DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP----DMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 244 ~----~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
. ..+...|+.+|+++|.+++++.+. |++++++|||.|||+.... ...+..++......+..+. ...
T Consensus 154 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~-----~~~ 227 (367)
T TIGR01746 154 IVTPPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYPD-----SPE 227 (367)
T ss_pred ccccccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCCC-----CCc
Confidence 1 123468999999999999988765 9999999999999974321 1223333333333332222 223
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccc
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK 382 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~ 382 (439)
...+|+|++|++++++.++...... ..+++||+++++++++.|+++.+.+ .|.+.+
T Consensus 228 ~~~~~~~vddva~ai~~~~~~~~~~----------~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 228 LTEDLTPVDYVARAIVALSSQPAAS----------AGGPVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred cccCcccHHHHHHHHHHHHhCCCcc----------cCCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 4678999999999999998754421 0137999999999999999999998 776544
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=246.48 Aligned_cols=268 Identities=17% Similarity=0.266 Sum_probs=198.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
...|+||||||+||||++|++.|.++|++|... .+|++|.+.+.++++..++|
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~---------------------------~~~l~d~~~v~~~i~~~~pd 430 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG---------------------------KGRLEDRSSLLADIRNVKPT 430 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCCeEEee---------------------------ccccccHHHHHHHHHhhCCC
Confidence 345799999999999999999999999987421 13688899999999988999
Q ss_pred EEEEcccccC---ccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCC------CCCCCCCCCCCCCC
Q 013602 177 HVMHLAAQAG---VRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLN------TKVPFSEKDRTDQP 247 (439)
Q Consensus 177 ~Vi~~Ag~~~---~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~------~~~~~~e~~~~~~p 247 (439)
+|||+||..+ .+.++.++...+++|+.|+.+|+++|++.+. ++|++||.++|+.. ...++.|++.+..+
T Consensus 431 ~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~--~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~ 508 (668)
T PLN02260 431 HVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL--LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFT 508 (668)
T ss_pred EEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC--eEEEEcccceecCCcccccccCCCCCcCCCCCCC
Confidence 9999999863 3345678899999999999999999999986 67888998898642 13467888766445
Q ss_pred CChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva 327 (439)
.+.|+.+|+++|.+++++. +..++|+..+||.+... ...|+..+++....... | .+..+++|++
T Consensus 509 ~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~---~~nfv~~~~~~~~~~~v--p------~~~~~~~~~~ 572 (668)
T PLN02260 509 GSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN---PRNFITKISRYNKVVNI--P------NSMTVLDELL 572 (668)
T ss_pred CChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC---ccHHHHHHhccceeecc--C------CCceehhhHH
Confidence 6899999999999998864 35677888888643211 11455666655442211 1 2367778899
Q ss_pred HHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccc---cCC--CCCCCCcccCChH
Q 013602 328 KGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM---KLP--RNGDVPFTHANIS 402 (439)
Q Consensus 328 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~---~~~--~~~~~~~~~~d~~ 402 (439)
.+++.+++... +++||+++++.+|+.|+++.+.+.++....+..+ ..+ .....+...+|++
T Consensus 573 ~~~~~l~~~~~--------------~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~~l~~~ 638 (668)
T PLN02260 573 PISIEMAKRNL--------------RGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNNEMDAS 638 (668)
T ss_pred HHHHHHHHhCC--------------CceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccccccHH
Confidence 88888876321 1799999999999999999999988421111111 111 1122222379999
Q ss_pred HHHHHcCCCccCcHHHHHHHHHH
Q 013602 403 LAQRELGYKPTTDLQTGLKKFVR 425 (439)
Q Consensus 403 k~~~~LG~~p~~~l~e~l~~~v~ 425 (439)
|+++.+|+ +. +++|+|.+++.
T Consensus 639 k~~~~~~~-~~-~~~~~l~~~~~ 659 (668)
T PLN02260 639 KLKKEFPE-LL-SIKESLIKYVF 659 (668)
T ss_pred HHHHhCcc-cc-chHHHHHHHHh
Confidence 99999998 54 79999998875
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=208.55 Aligned_cols=281 Identities=21% Similarity=0.231 Sum_probs=203.2
Q ss_pred EEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEEc
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHL 181 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~~ 181 (439)
|+||||||+||++|+..|.+.||+|+++.|+....... ....++ .-+.+.+.... .+|+|||+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~---------~~~~v~-------~~~~~~~~~~~-~~DavINL 63 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQN---------LHPNVT-------LWEGLADALTL-GIDAVINL 63 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhh---------cCcccc-------ccchhhhcccC-CCCEEEEC
Confidence 68999999999999999999999999999954321111 111111 22334444442 34999999
Q ss_pred ccccCc--cccccChhHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 182 AAQAGV--RYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP-AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 182 Ag~~~~--~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~-~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
||.... +.+.+..+..++.-+..|..|.++..+....+ .+|.-|..+.||......++|++++ ....-+..-.+.
T Consensus 64 AG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~--g~~Fla~lc~~W 141 (297)
T COG1090 64 AGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPP--GDDFLAQLCQDW 141 (297)
T ss_pred CCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCC--CCChHHHHHHHH
Confidence 996433 24555667899999999999999998554333 7888888999999999999998654 344556666677
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
|.....+.. .|.+++.+|.|+|.|+.+. .+..+......+---++ |+|+++++|||++|++++|..++++..
T Consensus 142 E~~a~~a~~-~gtRvvllRtGvVLs~~GG---aL~~m~~~fk~glGG~~----GsGrQ~~SWIhieD~v~~I~fll~~~~ 213 (297)
T COG1090 142 EEEALQAQQ-LGTRVVLLRTGVVLSPDGG---ALGKMLPLFKLGLGGKL----GSGRQWFSWIHIEDLVNAILFLLENEQ 213 (297)
T ss_pred HHHHhhhhh-cCceEEEEEEEEEecCCCc---chhhhcchhhhccCCcc----CCCCceeeeeeHHHHHHHHHHHHhCcC
Confidence 877777654 4999999999999998765 22233222222222233 799999999999999999999999876
Q ss_pred hccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCC------CCCCCcccCChHHHH----HHc
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR------NGDVPFTHANISLAQ----REL 408 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~------~~~~~~~~~d~~k~~----~~L 408 (439)
-. +.||++.+.|++..|+...+.+.++++.... .|. -++.....++..++. ...
T Consensus 214 ls-------------Gp~N~taP~PV~~~~F~~al~r~l~RP~~~~---vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~a 277 (297)
T COG1090 214 LS-------------GPFNLTAPNPVRNKEFAHALGRALHRPAILP---VPSFALRLLLGEMADLLLGGQRVLPKKLEAA 277 (297)
T ss_pred CC-------------CcccccCCCcCcHHHHHHHHHHHhCCCcccc---CcHHHHHHHhhhhHHHHhccchhhHHHHHHC
Confidence 54 6899999999999999999999999764432 232 133333344443332 457
Q ss_pred CCCccC-cHHHHHHHHHH
Q 013602 409 GYKPTT-DLQTGLKKFVR 425 (439)
Q Consensus 409 G~~p~~-~l~e~l~~~v~ 425 (439)
||+.++ ++++++.+.+.
T Consensus 278 GF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 278 GFQFQYPDLEEALADILK 295 (297)
T ss_pred CCeeecCCHHHHHHHHHh
Confidence 888885 78999988764
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=197.37 Aligned_cols=316 Identities=21% Similarity=0.230 Sum_probs=245.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh---hhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL---LERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
..|..||||-||.=|++|+..|+++|++|.++.|.++..++.+-+..-.. ..........+|++|...+.+++..++
T Consensus 27 ~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik 106 (376)
T KOG1372|consen 27 PRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK 106 (376)
T ss_pred cceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence 34689999999999999999999999999999998887776654332111 122467788899999999999999999
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCC--eEEEecCCcccCCCCCCCCCCCCCCCCCCChHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP--AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYA 252 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~--~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~ 252 (439)
|+-|.|+|+..++..+-+-++.+-++...||..|+++.+..+... ||...||+..||...+.|.+|..+. .|.++|+
T Consensus 107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPF-yPRSPYa 185 (376)
T KOG1372|consen 107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPF-YPRSPYA 185 (376)
T ss_pred chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCC-CCCChhH
Confidence 999999999988877777788888899999999999998766432 9999999999999999999999887 8999999
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHH---HHcCCCCceeecCCCCcceeeeeeHHHHHHH
Q 013602 253 ATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRD---ILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329 (439)
Q Consensus 253 ~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a 329 (439)
++|..+--++-.+++.+++-.+-=-..+--.|.+..+.....+.+. +.-|+.-.+. .|+-+..+||-|..|-++|
T Consensus 186 ~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~--LGNL~a~RDWGhA~dYVEA 263 (376)
T KOG1372|consen 186 AAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIE--LGNLSALRDWGHAGDYVEA 263 (376)
T ss_pred HhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEE--ecchhhhcccchhHHHHHH
Confidence 9999988888888877765332111222234555544443333333 2234333322 2688899999999999999
Q ss_pred HHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccccccc-------------------CCC
Q 013602 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK-------------------LPR 390 (439)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~-------------------~~~ 390 (439)
++.+++++.+ .-|.|..++..|++|+++.-...+|......-.. ..+
T Consensus 264 MW~mLQ~d~P--------------dDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyR 329 (376)
T KOG1372|consen 264 MWLMLQQDSP--------------DDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYR 329 (376)
T ss_pred HHHHHhcCCC--------------CceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccccC
Confidence 9999998886 5699999999999999999988888443332110 112
Q ss_pred CCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 391 NGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 391 ~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
+.++..++-|.+|+++.|||+|+.++.|-+++|+..=.+-
T Consensus 330 PtEVd~LqGdasKAk~~LgW~pkv~f~eLVkeMv~~DieL 369 (376)
T KOG1372|consen 330 PTEVDTLQGDASKAKKTLGWKPKVTFPELVKEMVASDIEL 369 (376)
T ss_pred cchhhhhcCChHHHHHhhCCCCccCHHHHHHHHHHhHHHH
Confidence 3344556789999999999999999999999998754443
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=225.27 Aligned_cols=264 Identities=19% Similarity=0.238 Sum_probs=185.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC---eEEEEECCCCCCChhHHHHHHHhh-------------------hcCCeE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD---GVLGLDNFNDYYDPSLKKARQALL-------------------ERSGIF 154 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~-------------------~~~~v~ 154 (439)
..+|+|||||||||||++|+++|++.+. +|+++.|.......... ...+.. ...++.
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eR-l~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~ 195 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIER-LKNEVIDAELFKCLQETHGKSYQSFMLSKLV 195 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHH-HHHHHhhhhhHHHHHHhcCccccccccccEE
Confidence 4689999999999999999999998764 78999996653322222 111100 024689
Q ss_pred EEEcccCCH------HHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 155 IVEGDINDM------ALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 155 ~~~~Dl~d~------~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
++.+|++++ +..+.+.+++ |+|||+|+.... ..+++..+++|+.|+.+++++|++.+..++||++||+.
T Consensus 196 ~v~GDl~d~~LGLs~~~~~~L~~~v--DiVIH~AA~v~f---~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTay 270 (605)
T PLN02503 196 PVVGNVCESNLGLEPDLADEIAKEV--DVIINSAANTTF---DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAY 270 (605)
T ss_pred EEEeeCCCcccCCCHHHHHHHHhcC--CEEEECcccccc---ccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCce
Confidence 999999987 4556666655 999999998653 25678899999999999999999876455999999999
Q ss_pred ccCCCCC----CCCCCC--------------------C------------C---------------------CCCCCChH
Q 013602 229 VYGLNTK----VPFSEK--------------------D------------R---------------------TDQPASLY 251 (439)
Q Consensus 229 v~g~~~~----~~~~e~--------------------~------------~---------------------~~~p~~~Y 251 (439)
+||.... .+++.. + . ...-.+.|
T Consensus 271 VyG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtY 350 (605)
T PLN02503 271 VNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTY 350 (605)
T ss_pred eecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChH
Confidence 9997531 122100 0 0 00112789
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC-------CChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP-------DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
..+|+.+|.++++... +++++|+||+.|.+.+..| +.....++-.+.+|. +..+ +++++...|+|+||
T Consensus 351 t~TK~lAE~lV~~~~~--~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~-lr~~--~~~~~~~~DiVPVD 425 (605)
T PLN02503 351 VFTKAMGEMVINSMRG--DIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQ-LTGF--LADPNGVLDVVPAD 425 (605)
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEcCCEecccccCCccccccCccccchhhhheeccc-eeEE--EeCCCeeEeEEeec
Confidence 9999999999997654 8999999999994422111 011111111122332 2322 26889999999999
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC--CcccHHHHHHHHHHHhCC
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT--SPVPVSDLVSILERLLKV 379 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~t~~el~~~l~~~~g~ 379 (439)
.++.+++.++....... ...+++||++++ .|+++.|+.+.+.+.+..
T Consensus 426 ~vvna~i~a~a~~~~~~--------~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 426 MVVNATLAAMAKHGGAA--------KPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred HHHHHHHHHHHhhhccc--------CCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 99999999854322110 113489999987 899999999999887653
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=204.31 Aligned_cols=236 Identities=19% Similarity=0.158 Sum_probs=171.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
.|+||||||+||||++++++|+++|++|++++|+.+ ...........++.++++|++|.+++.+++++.
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPD------ALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALG 75 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH------HHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 368999999999999999999999999999998321 111111111347889999999999998887652
Q ss_pred CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||...... +.++++..+++|+.|+.++++++ ++.+. ++||++||..... ..
T Consensus 76 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~------------~~ 142 (276)
T PRK06482 76 RIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGG-GRIVQVSSEGGQI------------AY 142 (276)
T ss_pred CCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcCccccc------------CC
Confidence 5799999999754332 22345678999999999999997 44443 4999999965421 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccc---cCCCCCCC--------ChHHHHHHHHHcCCCCceeecC
Q 013602 246 QPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTV---YGPWGRPD--------MAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v---~G~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
.+.+.|+.+|++.|.+++.++++ +|++++++|||.+ ||++.... .....+.. .+..+....
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---- 217 (276)
T PRK06482 143 PGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRR-ALADGSFAI---- 217 (276)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHH-HHhhccCCC----
Confidence 34679999999999999999876 5999999999988 55433211 11112222 222222222
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCC
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKV 379 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~ 379 (439)
+.+++|++++++.++..... +..||+++++..++.|+++.+.+.++.
T Consensus 218 --------~~d~~~~~~a~~~~~~~~~~-------------~~~~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK06482 218 --------PGDPQKMVQAMIASADQTPA-------------PRRLTLGSDAYASIRAALSERLAALEA 264 (276)
T ss_pred --------CCCHHHHHHHHHHHHcCCCC-------------CeEEecChHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999864432 157999999888998888888877764
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=222.73 Aligned_cols=235 Identities=19% Similarity=0.186 Sum_probs=168.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+||||||+||||++++++|+++|++|++++|... . ....+++++.+|++|.. +.+++.++ |+||
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~---------~---~~~~~ve~v~~Dl~d~~-l~~al~~~--D~VI 65 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPH---------D---ALDPRVDYVCASLRNPV-LQELAGEA--DAVI 65 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChh---------h---cccCCceEEEccCCCHH-HHHHhcCC--CEEE
Confidence 57999999999999999999999999999998321 0 11247889999999985 77777766 9999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+|+... .. ...+|+.|+.|++++|++.+. ++|++||. +|.. ..|. .+|
T Consensus 66 HLAa~~~-----~~---~~~vNv~Gt~nLleAA~~~Gv--RiV~~SS~--~G~~---------------~~~~----~aE 114 (699)
T PRK12320 66 HLAPVDT-----SA---PGGVGITGLAHVANAAARAGA--RLLFVSQA--AGRP---------------ELYR----QAE 114 (699)
T ss_pred EcCccCc-----cc---hhhHHHHHHHHHHHHHHHcCC--eEEEEECC--CCCC---------------cccc----HHH
Confidence 9998632 11 225899999999999999885 89999986 3321 0121 366
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCC--ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPD--MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
.++.. ++++++++|++++|||+.... ..+..++....++++ ..++|++|++++++.+++..
T Consensus 115 ~ll~~----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~p-------------I~vIyVdDvv~alv~al~~~ 177 (699)
T PRK12320 115 TLVST----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARP-------------IRVLHLDDLVRFLVLALNTD 177 (699)
T ss_pred HHHHh----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCc-------------eEEEEHHHHHHHHHHHHhCC
Confidence 66543 478999999999999965432 233333333333322 23599999999999998642
Q ss_pred hhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCccCcHH
Q 013602 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQ 417 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~ 417 (439)
. +++|||++++.+|+.|+.+++..... ..... ...+.....-|.+.++..++|.|+..++
T Consensus 178 ~--------------~GiyNIG~~~~~Si~el~~~i~~~~p-~~~~~-----~~~~~~~~~pdi~~a~~~~~w~~~~~~~ 237 (699)
T PRK12320 178 R--------------NGVVDLATPDTTNVVTAWRLLRSVDP-HLRTR-----RVRSWEQLIPEVDIAAVQEDWNFEFGWQ 237 (699)
T ss_pred C--------------CCEEEEeCCCeeEHHHHHHHHHHhCC-Ccccc-----ccccHHHhCCCCchhhhhcCCCCcchHH
Confidence 2 15999999999999999888866621 11111 1222333445777778889999997664
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-25 Score=205.18 Aligned_cols=218 Identities=21% Similarity=0.262 Sum_probs=131.2
Q ss_pred EECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHH--------h---hhcCCeEEEEcccCCH------H
Q 013602 104 VTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQA--------L---LERSGIFIVEGDINDM------A 164 (439)
Q Consensus 104 ItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~--------~---~~~~~v~~~~~Dl~d~------~ 164 (439)
|||||||+|++++.+|++++. +|+++.|..+... ...+.... . ....+++++.+|++++ +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~-~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~ 79 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQS-ALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDE 79 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHH-HHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCccccc-chhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChH
Confidence 799999999999999999987 9999999553211 11111100 0 1257999999999974 5
Q ss_pred HHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCC------C
Q 013602 165 LLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVP------F 238 (439)
Q Consensus 165 ~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~------~ 238 (439)
.+.++.+++ |+||||||..... .++....++|+.||.++++.|...... +|+|+||+.+.+...... .
T Consensus 80 ~~~~L~~~v--~~IiH~Aa~v~~~---~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iSTa~v~~~~~~~~~~~~~~~ 153 (249)
T PF07993_consen 80 DYQELAEEV--DVIIHCAASVNFN---APYSELRAVNVDGTRNLLRLAAQGKRK-RFHYISTAYVAGSRPGTIEEKVYPE 153 (249)
T ss_dssp HHHHHHHH----EEEE--SS-SBS----S--EEHHHHHHHHHHHHHHHTSSS----EEEEEEGGGTTS-TTT--SSS-HH
T ss_pred Hhhcccccc--ceeeecchhhhhc---ccchhhhhhHHHHHHHHHHHHHhccCc-ceEEeccccccCCCCCccccccccc
Confidence 677787887 9999999986654 355668899999999999999976645 999999965555433211 0
Q ss_pred CCC--CCCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC----CCChHHHHHHHHHcCCCCceeecCC
Q 013602 239 SEK--DRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR----PDMAYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 239 ~e~--~~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
.+. +......+.|.+||+++|.+++++.++.|++++|+|||.|+|.... .......++......+..+.. ++
T Consensus 154 ~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~--~~ 231 (249)
T PF07993_consen 154 EEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDL--PG 231 (249)
T ss_dssp H--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES---SB
T ss_pred ccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccc--cC
Confidence 111 1122334799999999999999999888999999999999993221 223233333333333333322 13
Q ss_pred CCcceeeeeeHHHHHHHH
Q 013602 313 HGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~ 330 (439)
..+...++++||.+|++|
T Consensus 232 ~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 232 DPDARLDLVPVDYVARAI 249 (249)
T ss_dssp ---TT--EEEHHHHHHHH
T ss_pred CCCceEeEECHHHHHhhC
Confidence 455679999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=196.85 Aligned_cols=230 Identities=15% Similarity=0.093 Sum_probs=162.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+.+++||||||+||||++++++|+++|++|++++|.... ......... .....+.++.+|++|.+++.++++..
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 80 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAA---EADALAAELNALRPGSAAALQADLLDPDALPELVAACV 80 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999999984321 111111111 11235889999999999999988864
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN--PQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~--~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... ...++++..+++|+.|+.++++++.+.- ....++++++.... .
T Consensus 81 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~ 148 (249)
T PRK09135 81 AAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE------------R 148 (249)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc------------C
Confidence 579999999974322 1234467789999999999999986421 12267776653321 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
+..+...|+.+|+++|.+++.+++++ +++++++|||.++||..... +...+......+..... +.
T Consensus 149 ~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~ 215 (249)
T PRK09135 149 PLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNS-FDEEARQAILARTPLKR------------IG 215 (249)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCcccccc-CCHHHHHHHHhcCCcCC------------Cc
Confidence 22567899999999999999999885 69999999999999976422 22223333333333222 22
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
+++|+++++..++..... ..|++|+++++..++
T Consensus 216 ~~~d~a~~~~~~~~~~~~-----------~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 216 TPEDIAEAVRFLLADASF-----------ITGQILAVDGGRSLT 248 (249)
T ss_pred CHHHHHHHHHHHcCcccc-----------ccCcEEEECCCeecc
Confidence 479999999766653221 234899999987654
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=195.98 Aligned_cols=224 Identities=17% Similarity=0.144 Sum_probs=158.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|++|||||+|+||++++++|+++|++|++++|+.. ......+.. ....+.++.+|++|.+++.++++..
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-----VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVE 80 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-----HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998421 111111111 1235788999999999988888754
Q ss_pred ---CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ....++.+..+++|+.++..+++.+ ++.+. ++||++||...++
T Consensus 81 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~~sS~~~~~---------- 149 (260)
T PRK12823 81 AFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGG-GAIVNVSSIATRG---------- 149 (260)
T ss_pred HcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEcCccccC----------
Confidence 67999999985321 1233445678899999976555544 44443 3999999987653
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCC-----------CCChHHHHHHHHHcCCCCce
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGR-----------PDMAYFFFTRDILNRKSIPI 307 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~-----------~~~~~~~~~~~~~~g~~~~~ 307 (439)
.+...|+.+|++.+.+++.++.++ |+++++|+||.|++|... ....+..+...+..+.+...
T Consensus 150 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (260)
T PRK12823 150 ----INRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMKR 225 (260)
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCccc
Confidence 123579999999999999998875 899999999999997321 01112223333333333222
Q ss_pred eecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 308 FESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 308 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+.+++|+|++++.++...... ..|+++++.+++
T Consensus 226 ------------~~~~~dva~~~~~l~s~~~~~----------~~g~~~~v~gg~ 258 (260)
T PRK12823 226 ------------YGTIDEQVAAILFLASDEASY----------ITGTVLPVGGGD 258 (260)
T ss_pred ------------CCCHHHHHHHHHHHcCccccc----------ccCcEEeecCCC
Confidence 446899999999988654321 234889987754
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-24 Score=200.04 Aligned_cols=231 Identities=17% Similarity=0.107 Sum_probs=162.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||.+++++|+++|++|++++|+.+......... . .....+.++++|++|.+++.++++..
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~--~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEI--N-KAGGKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH--H-hcCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999543111111110 0 11235788999999999999888764
Q ss_pred --CccEEEEcccccCccc----cccChhHHHHHHHHH----HHHHHHHH-HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAG----LVSLLEVC-KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~g----t~~ll~~~-~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... ..++++..+++|+.+ +.++++++ ++.+ .++||++||...+.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-~~~iv~~ss~~~~~----------- 149 (262)
T PRK13394 82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDR-GGVVIYMGSVHSHE----------- 149 (262)
T ss_pred cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-CcEEEEEcchhhcC-----------
Confidence 4799999999754322 233456788999999 66677777 5554 35999999965432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCC-------ceeecCC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSI-------PIFESPD 312 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~ 312 (439)
...+...|+.+|.+.+.+++.++++ .+++++++|||.+++|.... .+......... .++ +
T Consensus 150 -~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~ 219 (262)
T PRK13394 150 -ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDK------QIPEQAKELGISEEEVVKKVM---L 219 (262)
T ss_pred -CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhh------hhHhhhhccCCChHHHHHHHH---h
Confidence 1134578999999999999998877 38999999999999985321 11111000000 011 1
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+...++|++++|++.+++.++...... ..|+.|++.++.
T Consensus 220 ~~~~~~~~~~~~dva~a~~~l~~~~~~~----------~~g~~~~~~~g~ 259 (262)
T PRK13394 220 GKTVDGVFTTVEDVAQTVLFLSSFPSAA----------LTGQSFVVSHGW 259 (262)
T ss_pred cCCCCCCCCCHHHHHHHHHHHcCccccC----------CcCCEEeeCCce
Confidence 2334568999999999999998755421 234889988764
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=196.45 Aligned_cols=244 Identities=16% Similarity=0.106 Sum_probs=172.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh---hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+||||||+|+||.++++.|+++|++|++++|+.+. ......... ...++.++.+|++|.+++.+++++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDK----LAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHH----HHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 567999999999999999999999999999999984321 111111111 1246888999999999998888764
Q ss_pred -----CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||.... ....++....+++|+.++.++++++.+.. ..++||++||...+..
T Consensus 81 ~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~-------- 152 (276)
T PRK05875 81 TAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNT-------- 152 (276)
T ss_pred HHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCC--------
Confidence 67999999996422 11233456789999999999988765432 1249999999876431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+.+.|+.+|++.|.+++.+++++ ++++++|+||.+.++..............+....+ .
T Consensus 153 ----~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~ 216 (276)
T PRK05875 153 ----HRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRACTP------------L 216 (276)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHcCCC------------C
Confidence 1346789999999999999998875 69999999999987643211110111111111111 1
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc----cHHHHHHHHHHHhC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV----PVSDLVSILERLLK 378 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----t~~el~~~l~~~~g 378 (439)
..+++++|++.+++.++..+... ..|++++++++..+ ++.|+++.+.+..+
T Consensus 217 ~~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 217 PRVGEVEDVANLAMFLLSDAASW----------ITGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred CCCcCHHHHHHHHHHHcCchhcC----------cCCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 23577999999999998765421 23489999988765 77777777766554
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-23 Score=198.38 Aligned_cols=231 Identities=16% Similarity=0.142 Sum_probs=164.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+.+|+||||||+|+||+++++.|+++|++|++..+..+... .. ...+.. ....+.++.+|++|.++++++++..
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQD--AA-EVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHH--HH-HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999998877432111 11 111111 1235788999999999999888764
Q ss_pred ----CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+.- ...+||++||...|...
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 199 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPS---------- 199 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCC----------
Confidence 68999999997432 12345667899999999999999987542 12399999998876421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.+|..............+.... + ...+
T Consensus 200 --~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~--p----------~~r~ 265 (300)
T PRK06128 200 --PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSET--P----------MKRP 265 (300)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCC--C----------CCCC
Confidence 235679999999999999998874 8999999999999985321111111222221111 1 1235
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
...+|++.+++.++...... ..|++|++.++..+
T Consensus 266 ~~p~dva~~~~~l~s~~~~~----------~~G~~~~v~gg~~~ 299 (300)
T PRK06128 266 GQPVEMAPLYVLLASQESSY----------VTGEVFGVTGGLLL 299 (300)
T ss_pred cCHHHHHHHHHHHhCccccC----------ccCcEEeeCCCEeC
Confidence 67899999999987654321 23489999887644
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-23 Score=192.41 Aligned_cols=228 Identities=18% Similarity=0.120 Sum_probs=164.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||++++++|+++|++|+++.|.... ......... ....++.++.+|++|.+++.+++++.
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEE---AAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVE 80 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999999888774321 111111111 12346889999999999999988764
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
.+|+|||+||...... ..+++...+++|+.++.++++.+ ++.+ .++||++||...+..
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~i~~SS~~~~~~---------- 149 (249)
T PRK12825 81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR-GGRIVNISSVAGLPG---------- 149 (249)
T ss_pred HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEECccccCCC----------
Confidence 6799999999654322 23445678999999999998887 3445 349999999776532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|.+.+.+++.++++ .|++++++|||.++|+....... ..... .....+ ...
T Consensus 150 --~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~-~~~~~---~~~~~~----------~~~ 213 (249)
T PRK12825 150 --WPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIE-EAREA---KDAETP----------LGR 213 (249)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccc-hhHHh---hhccCC----------CCC
Confidence 134578999999999999988776 48999999999999986542211 11111 000111 122
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+++.+|+++++.++++..... ..|++|+++++.++
T Consensus 214 ~~~~~dva~~~~~~~~~~~~~----------~~g~~~~i~~g~~~ 248 (249)
T PRK12825 214 SGTPEDIARAVAFLCSDASDY----------ITGQVIEVTGGVDV 248 (249)
T ss_pred CcCHHHHHHHHHHHhCccccC----------cCCCEEEeCCCEee
Confidence 899999999999998765321 34599999987543
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-24 Score=199.69 Aligned_cols=233 Identities=15% Similarity=0.109 Sum_probs=165.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+||||||+|+||.++++.|+++|++|++++|+.+. ... ..+.. ...+.++.+|++|.+++.++++.+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~----~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPAR----ARL-AALEI-GPAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHH----HHH-HHHHh-CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999984321 111 11111 236889999999999999888764
Q ss_pred --CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhcC----CCCeEEEecCCc-ccCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNAN----PQPAIVWASSSS-VYGLNTKVPFSEKD 242 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~~----~~~~~V~~SS~~-v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... ..++++..+++|+.++.++++++.+.. ...+||++||.. .++
T Consensus 78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 146 (257)
T PRK07067 78 FGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRG----------- 146 (257)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCC-----------
Confidence 6899999999754321 234566789999999999999986432 223899999954 332
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHc---CCCCceeecCCCCcc
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILN---RKSIPIFESPDHGTV 316 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~ 316 (439)
..+...|+.+|.+.+.+++.++.+ .|+++++|+||.|+++...... ........ +.....+ +....
T Consensus 147 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~ 218 (257)
T PRK07067 147 --EALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVD---ALFARYENRPPGEKKRLV---GEAVP 218 (257)
T ss_pred --CCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhh---hhhhhccCCCHHHHHHHH---hhcCC
Confidence 135678999999999999998886 4899999999999997432110 00000000 0000011 12234
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
.+.+++++|+|++++.++...... ..|++|++.+|..+
T Consensus 219 ~~~~~~~~dva~~~~~l~s~~~~~----------~~g~~~~v~gg~~~ 256 (257)
T PRK07067 219 LGRMGVPDDLTGMALFLASADADY----------IVAQTYNVDGGNWM 256 (257)
T ss_pred CCCccCHHHHHHHHHHHhCccccc----------ccCcEEeecCCEeC
Confidence 557899999999999998765432 23489999887654
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-24 Score=203.53 Aligned_cols=250 Identities=14% Similarity=0.086 Sum_probs=170.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+||||++++++|+++|++|++++|+.+. ......+... ..++.++.+|++|.++++++++..
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDA----LDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHH----HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999984321 1111111111 236788999999999999988764
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCC-----CeEEEecCCcccCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQ-----PAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~-----~~~V~~SS~~v~g~~~~~~ 237 (439)
++|+||||||...... +.++++..+++|+.|+.++++++ .+.+.. ++||++||.+.+...
T Consensus 80 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---- 155 (287)
T PRK06194 80 RFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP---- 155 (287)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC----
Confidence 5799999999865422 23445678999999988877774 444321 489999997665321
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh-----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCC
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~-----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
.+...|+.+|++.+.+++.++.++ +++++.+.||.|..+-.. ...+++...+ +
T Consensus 156 --------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~-----------~~~~~~~~~~---~ 213 (287)
T PRK06194 156 --------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQ-----------SERNRPADLA---N 213 (287)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCcccc-----------ccccCchhcc---c
Confidence 345789999999999999998875 477888888877654221 2233444444 4
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCC
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNG 392 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~ 392 (439)
++...++|++++|.+.+.... . .++..|+++.+.+.+.........+....+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~--------------------~--------~~s~~dva~~i~~~~~~~~~~~~~~~~~~~ 265 (287)
T PRK06194 214 TAPPTRSQLIAQAMSQKAVGS--------------------G--------KVTAEEVAQLVFDAIRAGRFYIYSHPQALA 265 (287)
T ss_pred CccccchhhHHHHHHHhhhhc--------------------c--------CCCHHHHHHHHHHHHHcCCeEEEcCHHHHH
Confidence 567788888888887664211 0 167888888888876533333222222223
Q ss_pred CCCcccCChHHH
Q 013602 393 DVPFTHANISLA 404 (439)
Q Consensus 393 ~~~~~~~d~~k~ 404 (439)
+......|.+++
T Consensus 266 ~~~~~~~~~~~~ 277 (287)
T PRK06194 266 SVRTRMEDIVQQ 277 (287)
T ss_pred HHHHHHHHHHHh
Confidence 333334455555
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=191.07 Aligned_cols=226 Identities=18% Similarity=0.192 Sum_probs=164.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+|+||||+|+||.+++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.++++++++..
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEG----AERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVS 79 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999994321 111111111 1236778999999999998888754
Q ss_pred ---CccEEEEcccccCc-------cccccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-------RYAMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||.... ..+.++++..+++|+.++.++++++.+.. ..++||++||...|.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 150 (250)
T PRK07774 80 AFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL--------- 150 (250)
T ss_pred HhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC---------
Confidence 57999999997431 11234456789999999999988886431 134999999987652
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
+.+.|+.+|++.|.+++.+++++ |+++++++||.+..+....... ..+...+.++.+...
T Consensus 151 ------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~-~~~~~~~~~~~~~~~---------- 213 (250)
T PRK07774 151 ------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTP-KEFVADMVKGIPLSR---------- 213 (250)
T ss_pred ------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCC-HHHHHHHHhcCCCCC----------
Confidence 35689999999999999998875 7999999999998876432211 223344444443322
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+..++|++++++.++...... ..|++|++.++..+
T Consensus 214 --~~~~~d~a~~~~~~~~~~~~~----------~~g~~~~v~~g~~~ 248 (250)
T PRK07774 214 --MGTPEDLVGMCLFLLSDEASW----------ITGQIFNVDGGQII 248 (250)
T ss_pred --CcCHHHHHHHHHHHhChhhhC----------cCCCEEEECCCeec
Confidence 356899999999988764321 23489999987654
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-23 Score=194.98 Aligned_cols=238 Identities=16% Similarity=0.136 Sum_probs=169.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
.+|+||||||+|+||++++++|+++|++|++++|+.+. .. .........+.++++|++|.+++.++++.+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~----~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTAT----LA--DLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHF 75 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHH----HH--HHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999994321 11 111111346888999999999998887764
Q ss_pred -CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... .+.++++..+++|+.++.++++.+ ++.+. ++||++||.+.+..
T Consensus 76 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vsS~~~~~~------------ 142 (275)
T PRK08263 76 GRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRS-GHIIQISSIGGISA------------ 142 (275)
T ss_pred CCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEcChhhcCC------------
Confidence 679999999975432 233456788999999988777775 45553 49999999766532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCC-------hHHHHHHHHHcCCCCceeecCCCC
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDM-------AYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
......|+.+|++.+.+++.++.+ +|++++++|||.+.++...... ........+. ..
T Consensus 143 ~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 210 (275)
T PRK08263 143 FPMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELA------------EQ 210 (275)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHH------------HH
Confidence 123568999999999999998876 5899999999999876432110 0000101000 01
Q ss_pred cceeee-eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhC
Q 013602 315 TVARDF-TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLK 378 (439)
Q Consensus 315 ~~~~~~-i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g 378 (439)
.....+ +.++|++++++.+++..... ++.++...+..+++.++...+.+.-+
T Consensus 211 ~~~~~~~~~p~dva~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (275)
T PRK08263 211 WSERSVDGDPEAAAEALLKLVDAENPP------------LRLFLGSGVLDLAKADYERRLATWEE 263 (275)
T ss_pred HHhccCCCCHHHHHHHHHHHHcCCCCC------------eEEEeCchHHHHHHHHHHHHHHHHHH
Confidence 112235 78999999999999865432 24554444568999999999988644
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=187.94 Aligned_cols=246 Identities=17% Similarity=0.230 Sum_probs=193.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+..|-.+-|.|||||+|..++.+|.+.|-.|++--|-.++.. ...+...+...+-++..|+.|+++++++++..
T Consensus 58 S~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~----r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~s-- 131 (391)
T KOG2865|consen 58 SVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDP----RHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHS-- 131 (391)
T ss_pred cccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccch----hheeecccccceeeeccCCCCHHHHHHHHHhC--
Confidence 367778889999999999999999999999999999443211 11122334578999999999999999999998
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK 255 (439)
++|||+.|-- .+...-.+.++|+.+.+.+.+.|++.|.. |||++|+...- ....+-|-.+|
T Consensus 132 NVVINLIGrd----~eTknf~f~Dvn~~~aerlAricke~GVe-rfIhvS~Lgan--------------v~s~Sr~LrsK 192 (391)
T KOG2865|consen 132 NVVINLIGRD----YETKNFSFEDVNVHIAERLARICKEAGVE-RFIHVSCLGAN--------------VKSPSRMLRSK 192 (391)
T ss_pred cEEEEeeccc----cccCCcccccccchHHHHHHHHHHhhChh-heeehhhcccc--------------ccChHHHHHhh
Confidence 9999999841 11222356789999999999999999977 99999986631 13457799999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHh
Q 013602 256 KAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335 (439)
Q Consensus 256 ~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 335 (439)
.++|..+++. =-+.+|+||+.|||..++ ++..+.....+-+.+++|. .+....-..+||-|+|++|+.+++
T Consensus 193 ~~gE~aVrda----fPeAtIirPa~iyG~eDr---fln~ya~~~rk~~~~pL~~--~GekT~K~PVyV~DVaa~IvnAvk 263 (391)
T KOG2865|consen 193 AAGEEAVRDA----FPEATIIRPADIYGTEDR---FLNYYASFWRKFGFLPLIG--KGEKTVKQPVYVVDVAAAIVNAVK 263 (391)
T ss_pred hhhHHHHHhh----CCcceeechhhhcccchh---HHHHHHHHHHhcCceeeec--CCcceeeccEEEehHHHHHHHhcc
Confidence 9999999985 236799999999998765 5555555555567778874 334566789999999999999999
Q ss_pred hchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccccccc
Q 013602 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK 387 (439)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~ 387 (439)
++.. .|++|..++++.+.+.||++.+.+.......+...+
T Consensus 264 Dp~s------------~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~ 303 (391)
T KOG2865|consen 264 DPDS------------MGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLP 303 (391)
T ss_pred Cccc------------cCceeeecCCchhhHHHHHHHHHHHHhhccccccCC
Confidence 8863 448999999999999999999988877544443333
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=189.81 Aligned_cols=228 Identities=16% Similarity=0.101 Sum_probs=164.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||.+++++|+++|++|++++|+.+. ......... ....+.++.+|++|.+++.++++++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDD----AAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999994321 111111111 1235889999999999999998764
Q ss_pred ---CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
.+|+||||||.... ....+++...+++|+.++.++++++. +.+ .++||++||...++.
T Consensus 80 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss~~~~~~---------- 148 (251)
T PRK12826 80 DFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSSVAGPRV---------- 148 (251)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEechHhhcc----------
Confidence 57999999987554 22334556789999999999998874 344 349999999776511
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
...+...|+.+|.+.+.+++.++.+. |++++++|||.++||....... ..+...+..+.+ . ..
T Consensus 149 -~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~-~~~~~~~~~~~~--~----------~~ 214 (251)
T PRK12826 149 -GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGD-AQWAEAIAAAIP--L----------GR 214 (251)
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCc-hHHHHHHHhcCC--C----------CC
Confidence 11345789999999999999987763 8999999999999986542211 111122222211 1 14
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+++++|+|.++..++...... ..|++|++.+|..
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~~g~~ 248 (251)
T PRK12826 215 LGEPEDIAAAVLFLASDEARY----------ITGQTLPVDGGAT 248 (251)
T ss_pred CcCHHHHHHHHHHHhCccccC----------cCCcEEEECCCcc
Confidence 789999999999987654422 2348999987653
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-23 Score=192.30 Aligned_cols=230 Identities=16% Similarity=0.113 Sum_probs=163.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh--cCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE--RSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. .. ....... ..++.++.+|++|.++++++++++
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~----~~-~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAK----LA-AAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHH----HH-HHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999984321 11 1111111 235888999999999999998764
Q ss_pred ----CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNA---NPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~---~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... +.++.+..+++|+.++.++++++.+. ...++||++||.....
T Consensus 83 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~----------- 151 (255)
T PRK07523 83 AEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL----------- 151 (255)
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc-----------
Confidence 5799999999754322 23344678899999999999988643 1234999999965421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
+..+...|+.+|.+.+.+++.++.+ +|+++++|+||.+.++..........+...+....+ ...
T Consensus 152 -~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 218 (255)
T PRK07523 152 -ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTP------------AGR 218 (255)
T ss_pred -CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcCC------------CCC
Confidence 1134678999999999999999875 489999999999998853211001111112222211 123
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
+..++|+|.+++.++...... ..|+++++.++...|
T Consensus 219 ~~~~~dva~~~~~l~~~~~~~----------~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 219 WGKVEELVGACVFLASDASSF----------VNGHVLYVDGGITAS 254 (255)
T ss_pred CcCHHHHHHHHHHHcCchhcC----------ccCcEEEECCCeecc
Confidence 667999999999998754321 234889998875443
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=197.91 Aligned_cols=254 Identities=16% Similarity=0.110 Sum_probs=174.4
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcc----cC-c
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDV----VS-F 175 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~----~~-~ 175 (439)
+||||||||+||++++++|+++|++|++++|+.+.. ...+++.+.+|+.|++++.++++. .. .
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~------------~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~ 68 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS------------AGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc------------cCCCCccccccCCCHHHHHHHHhcccCcCCce
Confidence 489999999999999999999999999999965421 124677888999999999999942 12 4
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK 255 (439)
|.|+|+++... + ....+.+++++|+++|.+ +||++||..++.. .+ .+
T Consensus 69 d~v~~~~~~~~-----~--------~~~~~~~~i~aa~~~gv~-~~V~~Ss~~~~~~-------------~~------~~ 115 (285)
T TIGR03649 69 SAVYLVAPPIP-----D--------LAPPMIKFIDFARSKGVR-RFVLLSASIIEKG-------------GP------AM 115 (285)
T ss_pred eEEEEeCCCCC-----C--------hhHHHHHHHHHHHHcCCC-EEEEeeccccCCC-------------Cc------hH
Confidence 99999886421 1 112456899999999965 9999998765311 00 12
Q ss_pred HHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHh
Q 013602 256 KAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335 (439)
Q Consensus 256 ~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 335 (439)
...|.++++. .|++++++||+.+|+..... .+...+.....+. . +.++..++|++++|+|+++..++.
T Consensus 116 ~~~~~~l~~~---~gi~~tilRp~~f~~~~~~~-----~~~~~~~~~~~~~-~---~~g~~~~~~v~~~Dva~~~~~~l~ 183 (285)
T TIGR03649 116 GQVHAHLDSL---GGVEYTVLRPTWFMENFSEE-----FHVEAIRKENKIY-S---ATGDGKIPFVSADDIARVAYRALT 183 (285)
T ss_pred HHHHHHHHhc---cCCCEEEEeccHHhhhhccc-----ccccccccCCeEE-e---cCCCCccCcccHHHHHHHHHHHhc
Confidence 2334444331 39999999999988643111 1112222223222 2 346778899999999999999988
Q ss_pred hchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCC-------CCCCCc------------
Q 013602 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR-------NGDVPF------------ 396 (439)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~-------~~~~~~------------ 396 (439)
.+... ++.|++++++.+|+.|+++++.+.+|.+..+..++... .+-...
T Consensus 184 ~~~~~------------~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 251 (285)
T TIGR03649 184 DKVAP------------NTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELAQRLQSFGMPEDLARMLASLDTAV 251 (285)
T ss_pred CCCcC------------CCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 65422 27899999999999999999999999887665443211 000000
Q ss_pred ----ccCChHHHHHHcCCCccCcHHHHHHHHH
Q 013602 397 ----THANISLAQRELGYKPTTDLQTGLKKFV 424 (439)
Q Consensus 397 ----~~~d~~k~~~~LG~~p~~~l~e~l~~~v 424 (439)
........++.+|.+|+ ++++-+++..
T Consensus 252 ~~g~~~~~~~~~~~~~G~~p~-~~~~~~~~~~ 282 (285)
T TIGR03649 252 KNGAEVRLNDVVKAVTGSKPR-GFRDFAESNK 282 (285)
T ss_pred hCCccccccchHHHHhCcCCc-cHHHHHHHhh
Confidence 00123445666898887 7887776653
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=191.14 Aligned_cols=219 Identities=16% Similarity=0.074 Sum_probs=154.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|++|||||+|+||++++++|+++|++|++++|+.+. ......+.. ....+.++.+|++|.+++.++++.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~----l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPG----LRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFR 79 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999984321 111111111 1235788999999999999988765
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... +.++.+..+++|+.|+.++++++. +.+..++||++||...+.
T Consensus 80 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~----------- 148 (275)
T PRK05876 80 LLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV----------- 148 (275)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc-----------
Confidence 5799999999754322 234456789999999999888874 343234999999977653
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
+..+...|+.+|.+.+.+.+.++.++ |+++++|+||.+.++........ .............. +.....++
T Consensus 149 -~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~ 222 (275)
T PRK05876 149 -PNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERI--RGAACAQSSTTGSP---GPLPLQDD 222 (275)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhh--cCcccccccccccc---cccccccc
Confidence 12456789999999888888887764 89999999999988743211000 00000000111111 22334567
Q ss_pred eeeHHHHHHHHHHHHhh
Q 013602 320 FTYIDDIVKGCLAALDT 336 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~ 336 (439)
+++++|+|++++.++..
T Consensus 223 ~~~~~dva~~~~~ai~~ 239 (275)
T PRK05876 223 NLGVDDIAQLTADAILA 239 (275)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 89999999999999864
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=190.94 Aligned_cols=231 Identities=20% Similarity=0.181 Sum_probs=159.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-HHHHHHhh-cccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-MALLKKLF-DVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~-~~~~ 174 (439)
..+|+||||||+|+||++++++|+++|++|+++.|+.+ ..........+++++.+|++| .+.+.+.+ ..+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~-------~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~- 86 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD-------KAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDS- 86 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHH-------HHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCC-
Confidence 45789999999999999999999999999999998432 111111112468999999998 46676766 444
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|+|||++|.... .++...+++|..++.++++++++.+.. +||++||.++||.....+..+......+...|..+
T Consensus 87 -d~vi~~~g~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~~~-~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
T PLN00141 87 -DAVICATGFRRS----FDPFAPWKVDNFGTVNLVEACRKAGVT-RFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVA 160 (251)
T ss_pred -CEEEECCCCCcC----CCCCCceeeehHHHHHHHHHHHHcCCC-EEEEEccccccCCCcccccCcchhHHHHHHHHHHH
Confidence 999999986321 122334578999999999999988854 99999999999854332221111111122334567
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 334 (439)
|..+|.++++ .|+++++||||.++++... +. ..+. + .......+++.+|+|++++.++
T Consensus 161 k~~~e~~l~~----~gi~~~iirpg~~~~~~~~--------------~~-~~~~--~-~~~~~~~~i~~~dvA~~~~~~~ 218 (251)
T PLN00141 161 KLQAEKYIRK----SGINYTIVRPGGLTNDPPT--------------GN-IVME--P-EDTLYEGSISRDQVAEVAVEAL 218 (251)
T ss_pred HHHHHHHHHh----cCCcEEEEECCCccCCCCC--------------ce-EEEC--C-CCccccCcccHHHHHHHHHHHh
Confidence 8888877654 4999999999999976321 11 1111 1 1112235799999999999999
Q ss_pred hhchhccCCCCCccCCCCCcEEEecC---CCcccHHHHHHHHHH
Q 013602 335 DTAEKSTGSGGKKRGRAQLRVFNLGN---TSPVPVSDLVSILER 375 (439)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~t~~el~~~l~~ 375 (439)
..+... +.++.+.+ +...++.++...+.+
T Consensus 219 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 219 LCPESS------------YKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred cChhhc------------CcEEEEecCCCCCchhHHHHHHHhhc
Confidence 876632 26777776 234788888887754
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-23 Score=192.15 Aligned_cols=229 Identities=17% Similarity=0.129 Sum_probs=159.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+... ....+.. ...++.++.+|++|.+++.++++..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAA----AAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVE 77 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH----HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999543211 1111111 2346889999999999999888754
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
.+|+||||||...... +.++.+..+++|+.++.++++.+ ++.+. ++||++||...+..
T Consensus 78 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss~~~~~~---------- 146 (258)
T PRK12429 78 TFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG-GRIINMASVHGLVG---------- 146 (258)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-eEEEEEcchhhccC----------
Confidence 5799999999754322 22344567889999955555544 44553 49999999754321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCc-------eeecCC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIP-------IFESPD 312 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~-------~~~~~~ 312 (439)
..+.+.|+.+|.+.+.+++.++.++ ++++++++||.+++|.... .+.........+ .+ .
T Consensus 147 --~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~ 215 (258)
T PRK12429 147 --SAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRK------QIPDLAKERGISEEEVLEDVL---L 215 (258)
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhh------hhhhhccccCCChHHHHHHHH---h
Confidence 1356789999999999999887764 7999999999999885321 111111110010 11 1
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.....+.|++++|+|++++.++...... ..|+.|++.++
T Consensus 216 ~~~~~~~~~~~~d~a~~~~~l~~~~~~~----------~~g~~~~~~~g 254 (258)
T PRK12429 216 PLVPQKRFTTVEEIADYALFLASFAAKG----------VTGQAWVVDGG 254 (258)
T ss_pred ccCCccccCCHHHHHHHHHHHcCccccC----------ccCCeEEeCCC
Confidence 1223457999999999999998654321 23488988875
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=188.81 Aligned_cols=230 Identities=16% Similarity=0.126 Sum_probs=160.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+|+||||||+|+||++++++|+++|++|++++|+... ........ ...++.++.+|++|.+++.++++..
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAG-----AEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAE 75 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999994321 11111111 1246889999999999888777654
Q ss_pred --CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+|||+||...... ..++.+..+++|+.|+..+++.+ ++.+. ++||++||...+...
T Consensus 76 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~~~v~~ss~~~~~~~---------- 144 (255)
T TIGR01963 76 FGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGW-GRIINIASAHGLVAS---------- 144 (255)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-eEEEEEcchhhcCCC----------
Confidence 4799999999754322 22334567889999988887776 44553 499999997654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCcee----ecCCCCcc
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIF----ESPDHGTV 316 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~ 316 (439)
.....|+.+|.+.+.+++.++.+. +++++++|||.+++|... ............... .....+..
T Consensus 145 --~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (255)
T TIGR01963 145 --PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVE------KQIADQAKTRGIPEEQVIREVMLPGQP 216 (255)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHH------HHHHhhhcccCCCchHHHHHHHHccCc
Confidence 235789999999999999887763 899999999999987421 111111111111100 00012334
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+++++++|+|++++.++...... ..++.|++.++.
T Consensus 217 ~~~~~~~~d~a~~~~~~~~~~~~~----------~~g~~~~~~~g~ 252 (255)
T TIGR01963 217 TKRFVTVDEVAETALFLASDAAAG----------ITGQAIVLDGGW 252 (255)
T ss_pred cccCcCHHHHHHHHHHHcCccccC----------ccceEEEEcCcc
Confidence 567999999999999998764321 134889998764
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-22 Score=185.92 Aligned_cols=237 Identities=18% Similarity=0.095 Sum_probs=169.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
+|++|||||+|+||.+++++|+++|++|++++|+... ...........++.++.+|+.|.+++.++++..
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAA-----LAAFADALGDARFVPVACDLTDAASLAAALANAAAERG 76 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999984321 111111223346889999999999998888764
Q ss_pred CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||...... ..+.....+++|+.++.++++++. +.+ .++||++||...+..
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~------------- 142 (257)
T PRK07074 77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRS-RGAVVNIGSVNGMAA------------- 142 (257)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhcCC-------------
Confidence 5799999999754321 122334567899999988888873 334 348999999643210
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC-ChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD-MAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
.....|+.+|.+.+.+++.+++++ |+++++++||.++++..... .....+...... ....++|+
T Consensus 143 ~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 210 (257)
T PRK07074 143 LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKK------------WYPLQDFA 210 (257)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHh------------cCCCCCCC
Confidence 123479999999999999998774 79999999999998743210 000111111111 11235789
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHH
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERL 376 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~ 376 (439)
+++|++++++.++...... ..|+++++.++...+..||.+.+.+.
T Consensus 211 ~~~d~a~~~~~l~~~~~~~----------~~g~~~~~~~g~~~~~~~~~~~~~~~ 255 (257)
T PRK07074 211 TPDDVANAVLFLASPAARA----------ITGVCLPVDGGLTAGNREMARTLTLE 255 (257)
T ss_pred CHHHHHHHHHHHcCchhcC----------cCCcEEEeCCCcCcCChhhhhhhccc
Confidence 9999999999998644321 23489999999999999999887643
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-22 Score=177.77 Aligned_cols=210 Identities=16% Similarity=0.094 Sum_probs=151.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
.++|.|+||||+++||.+++++|++.|++|+++.|..++ -+..........+.++.+|++|.+++.++++..
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~dr-----L~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~ 78 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREER-----LEALADEIGAGAALALALDVTDRAAVEAAIEALPEE 78 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHH-----HHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999993321 111122222256889999999999977666543
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||..... ...++++..+++|+.|..+..+++ .+++.. +||++||.+-. .
T Consensus 79 ~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G-~IiN~~SiAG~------------~ 145 (246)
T COG4221 79 FGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSG-HIINLGSIAGR------------Y 145 (246)
T ss_pred hCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCc-eEEEecccccc------------c
Confidence 589999999986542 234567789999999977776665 444433 99999996531 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCCh--HHHHHHHHHcCCCCceeecCCCCccee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMA--YFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
+......|+.+|++...+.+.++++. +++++.|.||.|-......-.. -........ ...
T Consensus 146 ~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y---------------~~~ 210 (246)
T COG4221 146 PYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVY---------------KGG 210 (246)
T ss_pred cCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHh---------------ccC
Confidence 22346889999999999999999985 8999999999985432110000 000111111 112
Q ss_pred eeeeHHHHHHHHHHHHhhchh
Q 013602 319 DFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~ 339 (439)
..+..+|+|+++++++..|..
T Consensus 211 ~~l~p~dIA~~V~~~~~~P~~ 231 (246)
T COG4221 211 TALTPEDIAEAVLFAATQPQH 231 (246)
T ss_pred CCCCHHHHHHHHHHHHhCCCc
Confidence 367789999999999998875
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=187.85 Aligned_cols=229 Identities=14% Similarity=0.074 Sum_probs=158.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEE-ECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGL-DNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+.+++|+||||+|+||.+++++|+++|++|+++ .|+... ......+. ....++.++.+|++|++++.++++++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKA----AEETAEEIEALGRKALAVKANVGDVEKIKEMFAQID 77 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH----HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999998874 553211 11111111 12346889999999999999988865
Q ss_pred ----CccEEEEcccccCcccc----ccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVRYA----MQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||....... .++....+++|+.++.++++++.+.. ..++||++||...+.
T Consensus 78 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------- 146 (250)
T PRK08063 78 EEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR----------- 146 (250)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc-----------
Confidence 58999999997443222 22334578899999999888876432 134999999966532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
+..+...|+.+|.+.|.+++.++.+ .|+++++|+||.+..+..........+........ + ...
T Consensus 147 -~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~--~----------~~~ 213 (250)
T PRK08063 147 -YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKT--P----------AGR 213 (250)
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCC--C----------CCC
Confidence 1134678999999999999998876 48999999999998764321100011111111111 0 113
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+++.+|+|++++.++...... ..|+.+++.++..
T Consensus 214 ~~~~~dva~~~~~~~~~~~~~----------~~g~~~~~~gg~~ 247 (250)
T PRK08063 214 MVEPEDVANAVLFLCSPEADM----------IRGQTIIVDGGRS 247 (250)
T ss_pred CcCHHHHHHHHHHHcCchhcC----------ccCCEEEECCCee
Confidence 688999999999998765421 2348888887654
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=187.05 Aligned_cols=213 Identities=15% Similarity=0.138 Sum_probs=150.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
.+|+||||||+|+||++++++|+++|++|++++|+.+ ...........++.++.+|++|.+++.++++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~------~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 76 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEA------ARADFEALHPDRALARLLDVTDFDAIDAVVADAEATF 76 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHH------HHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999999999432 111111112346888999999999999888764
Q ss_pred -CccEEEEcccccCcccc----ccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVRYA----MQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||....... .++....+++|+.|+.++++++. +.+ .++||++||.+.+..
T Consensus 77 ~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~iSS~~~~~~------------ 143 (277)
T PRK06180 77 GPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR-RGHIVNITSMGGLIT------------ 143 (277)
T ss_pred CCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CCEEEEEecccccCC------------
Confidence 57999999997543222 23345679999999999999864 333 249999999765421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCC-----hHHHH---HHHHHcCCCCceeecCCC
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDM-----AYFFF---TRDILNRKSIPIFESPDH 313 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~-----~~~~~---~~~~~~g~~~~~~~~~~~ 313 (439)
..+...|+.+|++.|.+++.++.+ +|+++++++||.+.++...... ....+ ........ ..
T Consensus 144 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------ 215 (277)
T PRK06180 144 MPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAR--EA------ 215 (277)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHH--Hh------
Confidence 135678999999999999998876 4899999999999887432111 11111 11110000 00
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhch
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
.....+..++|+|++++.++....
T Consensus 216 -~~~~~~~~~~dva~~~~~~l~~~~ 239 (277)
T PRK06180 216 -KSGKQPGDPAKAAQAILAAVESDE 239 (277)
T ss_pred -hccCCCCCHHHHHHHHHHHHcCCC
Confidence 011235678999999999988654
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=190.18 Aligned_cols=231 Identities=16% Similarity=0.122 Sum_probs=159.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|++|||||+||||++++++|+++|++|++++|+... ......... ....++.++.+|++|.+++.++++..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~---~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAP---RANKVVAEIEAAGGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchH---hHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985421 111111111 11246788999999999998888753
Q ss_pred ---CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDRTDQPAS 249 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~ 249 (439)
.+|+||||||.... ...++...+++|+.++.++++++.+... ..+||++||........ ........
T Consensus 81 ~~~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~-------~~~~~~~~ 151 (248)
T PRK07806 81 EFGGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT-------VKTMPEYE 151 (248)
T ss_pred hCCCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc-------ccCCcccc
Confidence 57999999986321 2334567889999999999999986531 23899999954321100 01112257
Q ss_pred hHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHH
Q 013602 250 LYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDI 326 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dv 326 (439)
.|+.+|+++|.+++.++.+ .|+++++++||.+-++... .+ .......... ........+++++|+
T Consensus 152 ~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~------~~----~~~~~~~~~~--~~~~~~~~~~~~~dv 219 (248)
T PRK07806 152 PVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA------TL----LNRLNPGAIE--ARREAAGKLYTVSEF 219 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh------hh----hccCCHHHHH--HHHhhhcccCCHHHH
Confidence 8999999999999999876 3899999999987765211 11 1100000000 000112368999999
Q ss_pred HHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 327 a~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
|++++.+++.... .|++|++++++.
T Consensus 220 a~~~~~l~~~~~~------------~g~~~~i~~~~~ 244 (248)
T PRK07806 220 AAEVARAVTAPVP------------SGHIEYVGGADY 244 (248)
T ss_pred HHHHHHHhhcccc------------CccEEEecCccc
Confidence 9999999985432 348999998764
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-22 Score=228.60 Aligned_cols=261 Identities=19% Similarity=0.185 Sum_probs=182.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCC----CeEEEEECCCCCCChhHHHHHHHh--------hhcCCeEEEEcccCC---
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRG----DGVLGLDNFNDYYDPSLKKARQAL--------LERSGIFIVEGDIND--- 162 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~v~~~~~Dl~d--- 162 (439)
..++|||||||||||.+++.+|++++ ++|+++.|........ ....... ....++.++.+|+++
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~-~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~l 1048 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGL-ERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKF 1048 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHH-HHHHHHHHHhCCCchhhhcceEEEeccCCCccC
Confidence 35899999999999999999999987 7999999954422111 1111100 012368999999974
Q ss_pred ---HHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-----
Q 013602 163 ---MALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT----- 234 (439)
Q Consensus 163 ---~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~----- 234 (439)
.+.+.++.+.+ |+|||||+..... .........|+.|+.+++++|++.+.. +|+++||.++|+...
T Consensus 1049 gl~~~~~~~l~~~~--d~iiH~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~vSS~~v~~~~~~~~~~ 1122 (1389)
T TIGR03443 1049 GLSDEKWSDLTNEV--DVIIHNGALVHWV---YPYSKLRDANVIGTINVLNLCAEGKAK-QFSFVSSTSALDTEYYVNLS 1122 (1389)
T ss_pred CcCHHHHHHHHhcC--CEEEECCcEecCc---cCHHHHHHhHHHHHHHHHHHHHhCCCc-eEEEEeCeeecCcccccchh
Confidence 45667776666 9999999975432 334455678999999999999988754 999999999986421
Q ss_pred -------CCCCCCCCCC----CCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCC
Q 013602 235 -------KVPFSEKDRT----DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRK 303 (439)
Q Consensus 235 -------~~~~~e~~~~----~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~ 303 (439)
...+.|++.. ..+...|+.+|+++|.++..+.+. |++++++|||.|||+..........++..++++.
T Consensus 1123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~ 1201 (1389)
T TIGR03443 1123 DELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKR-GLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGC 1201 (1389)
T ss_pred hhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhC-CCCEEEECCCccccCCCcCCCCchhHHHHHHHHH
Confidence 1123333221 123467999999999999988764 9999999999999986543222222222222211
Q ss_pred -CCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCc
Q 013602 304 -SIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVK 380 (439)
Q Consensus 304 -~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~ 380 (439)
....++ .....++|++|+|++++++.++..+... ..+.+||++++..+++.++++.+.+. |.+
T Consensus 1202 ~~~~~~p---~~~~~~~~~~Vddva~ai~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~ 1265 (1389)
T TIGR03443 1202 IQLGLIP---NINNTVNMVPVDHVARVVVAAALNPPKE----------SELAVAHVTGHPRIRFNDFLGTLKTY-GYD 1265 (1389)
T ss_pred HHhCCcC---CCCCccccccHHHHHHHHHHHHhCCccc----------CCCCEEEeCCCCCCcHHHHHHHHHHh-CCC
Confidence 122221 3345689999999999999998654311 12268999999899999999999764 443
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-22 Score=189.36 Aligned_cols=230 Identities=13% Similarity=0.063 Sum_probs=160.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|++|||||+|+||.+++++|+++|++|++.+|+.+... ........ .....+.++.+|++|.+++.++++.+
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEED--AQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhh--HHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 67799999999999999999999999999999877432111 11111111 11235778999999999998887764
Q ss_pred ---CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|++|||||.... ..+.++++..+++|+.|+.++++++...- ...+||++||...+..
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~------------ 192 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQP------------ 192 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccC------------
Confidence 57999999996321 22345567899999999999999886531 1239999999876532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
......|+.+|++.+.+++.++.+ .|+++++|+||.|+++..............+... .+. ..+.
T Consensus 193 ~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~--~~~----------~r~~ 260 (294)
T PRK07985 193 SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQ--TPM----------KRAG 260 (294)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhcc--CCC----------CCCC
Confidence 123468999999999999999887 4899999999999998532111001111111111 111 1245
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+|+|.+++.++...... ..|+++.+.+|.
T Consensus 261 ~pedva~~~~fL~s~~~~~----------itG~~i~vdgG~ 291 (294)
T PRK07985 261 QPAELAPVYVYLASQESSY----------VTAEVHGVCGGE 291 (294)
T ss_pred CHHHHHHHHHhhhChhcCC----------ccccEEeeCCCe
Confidence 6899999999998754421 234778777653
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=183.28 Aligned_cols=226 Identities=15% Similarity=0.152 Sum_probs=161.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+++||||+|+||+++++.|+++|++|++++|..............+. .....+.++.+|++|.+++.++++..
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999998875433222222111111 11246889999999999998888642
Q ss_pred ---CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHH-----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCK-----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~-----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ....+++...+++|+.++.++++++. +.+. ++||++||...+..
T Consensus 84 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~iv~~sS~~~~~~--------- 153 (249)
T PRK12827 84 EFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRG-GRIVNIASVAGVRG--------- 153 (249)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCC-eEEEEECCchhcCC---------
Confidence 57999999997542 12234456789999999999999987 3343 48999999765431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
..+...|+.+|++.+.+++.++.++ ++++++++||.++++........ ..+.+..+..
T Consensus 154 ---~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~----~~~~~~~~~~------------ 214 (249)
T PRK12827 154 ---NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT----EHLLNPVPVQ------------ 214 (249)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH----HHHHhhCCCc------------
Confidence 1345789999999999999988764 89999999999999854322111 1222222211
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.+.+++|++++++.++...... ..|+.+++.++
T Consensus 215 ~~~~~~~va~~~~~l~~~~~~~----------~~g~~~~~~~g 247 (249)
T PRK12827 215 RLGEPDEVAALVAFLVSDAASY----------VTGQVIPVDGG 247 (249)
T ss_pred CCcCHHHHHHHHHHHcCcccCC----------ccCcEEEeCCC
Confidence 1457899999999988654321 23478888765
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=183.99 Aligned_cols=227 Identities=14% Similarity=0.096 Sum_probs=157.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEE-ECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGL-DNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+.+++|+||||+|+||++++++|+++|++|+++ .|+.+ .......... ....+.++.+|++|.+++.++++.+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~ 79 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQ----AADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLK 79 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH----HHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999886 45221 1111111111 1246889999999999998888753
Q ss_pred ----------CccEEEEcccccCcccc----ccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCC
Q 013602 174 ----------SFTHVMHLAAQAGVRYA----MQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 174 ----------~~d~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~ 238 (439)
++|+||||||....... .+.....+++|+.++.++++++.+.- ..++||++||..++..
T Consensus 80 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~------ 153 (254)
T PRK12746 80 NELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLG------ 153 (254)
T ss_pred HHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCC------
Confidence 57999999997543221 22235678899999999999887531 1238999999877531
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
..+...|+.+|.+.+.+++.++++ .++++++++||.++++-......-..+.. ..... .
T Consensus 154 ------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~-~~~~~-----------~ 215 (254)
T PRK12746 154 ------FTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRN-FATNS-----------S 215 (254)
T ss_pred ------CCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHHH-HHHhc-----------C
Confidence 134578999999999999998876 47999999999999874321000001111 11111 1
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
....+++++|+++++..++...... ..|++|++.++
T Consensus 216 ~~~~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~i~~~ 251 (254)
T PRK12746 216 VFGRIGQVEDIADAVAFLASSDSRW----------VTGQIIDVSGG 251 (254)
T ss_pred CcCCCCCHHHHHHHHHHHcCcccCC----------cCCCEEEeCCC
Confidence 1224678999999998887654321 23479999765
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=185.16 Aligned_cols=219 Identities=14% Similarity=0.146 Sum_probs=152.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+... ......+.. ...++.++.+|++|.+++.++++.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAER----LDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999994421 111111111 1246889999999999998888764
Q ss_pred ---CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNAN--PQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~--~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||.... ....++++..+++|+.++..+++++.... ..++||++||...+.
T Consensus 79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~------------ 146 (258)
T PRK07890 79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH------------ 146 (258)
T ss_pred HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc------------
Confidence 68999999997432 12234566889999999999999986431 123899999976532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCc---eeecCCCCcce
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIP---IFESPDHGTVA 317 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~ 317 (439)
+..+...|+.+|.+.+.+++.++.++ ++++++++||.+++|.... ++....++.... .+.........
T Consensus 147 ~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (258)
T PRK07890 147 SQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKG------YFRHQAGKYGVTVEQIYAETAANSDL 220 (258)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHH------HhhhcccccCCCHHHHHHHHhhcCCc
Confidence 11346789999999999999998764 8999999999999985321 111100000000 00000000112
Q ss_pred eeeeeHHHHHHHHHHHHhhc
Q 013602 318 RDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~ 337 (439)
..+.+++|++.+++.++...
T Consensus 221 ~~~~~~~dva~a~~~l~~~~ 240 (258)
T PRK07890 221 KRLPTDDEVASAVLFLASDL 240 (258)
T ss_pred cccCCHHHHHHHHHHHcCHh
Confidence 24678999999999988754
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=190.45 Aligned_cols=235 Identities=13% Similarity=0.062 Sum_probs=160.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
+|+||||||+|+||.+++++|+++|++|++++|+.......... .........+.++.+|++|.+++.++++++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQE-INAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999854311111110 001111246889999999999998888764
Q ss_pred CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCc-ccCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSS-VYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~-v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... ...++++..+++|+.++.++++++.+ .+...+||++||.. .++.
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~------------ 148 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS------------ 148 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC------------
Confidence 679999999975432 12334567889999998877777643 34234999999854 3321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCC----CceeecCCCCcce
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKS----IPIFESPDHGTVA 317 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~ 317 (439)
.....|+.+|++.+.+++.++.+ .|+++++++||.++++.... ..+..+... .+.. ...+ ..+...
T Consensus 149 -~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~---~~~~~~ 221 (259)
T PRK12384 149 -KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQ-SLLPQYAKK--LGIKPDEVEQYY---IDKVPL 221 (259)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhh-hhhHHHHHh--cCCChHHHHHHH---HHhCcc
Confidence 23568999999999999998865 58999999999988764321 111111110 0100 0011 122344
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+.+++++|++.+++.++...... ..|++|++.+++.
T Consensus 222 ~~~~~~~dv~~~~~~l~~~~~~~----------~~G~~~~v~~g~~ 257 (259)
T PRK12384 222 KRGCDYQDVLNMLLFYASPKASY----------CTGQSINVTGGQV 257 (259)
T ss_pred cCCCCHHHHHHHHHHHcCccccc----------ccCceEEEcCCEE
Confidence 56899999999999887644321 2348999988753
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=185.07 Aligned_cols=234 Identities=18% Similarity=0.143 Sum_probs=158.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++++||||||+|+||++++++|+++|++|++++|+.+. .+..........+.++.+|++|++++.++++.+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAA-----LAATAARLPGAKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 577999999999999999999999999999999994321 111111112225788999999999998888764
Q ss_pred --CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+|||+||.... ....+++...+++|+.++.++++++. ..+..++||++||.....
T Consensus 84 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~----------- 152 (264)
T PRK12829 84 FGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL----------- 152 (264)
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc-----------
Confidence 67999999997522 12234557889999999999888773 333224788888854321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHc--CCCCcee-ecCCCCcc
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILN--RKSIPIF-ESPDHGTV 316 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~--g~~~~~~-~~~~~~~~ 316 (439)
...+...|+.+|.+.|.+++.++.+. +++++++|||.++||.... +...... +.....+ ........
T Consensus 153 -~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (264)
T PRK12829 153 -GYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRR------VIEARAQQLGIGLDEMEQEYLEKIS 225 (264)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHH------HhhhhhhccCCChhHHHHHHHhcCC
Confidence 11234679999999999999988764 8999999999999985421 1110000 0000000 00000011
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
...+++++|++.++..++...... ..|+.|+++++..
T Consensus 226 ~~~~~~~~d~a~~~~~l~~~~~~~----------~~g~~~~i~~g~~ 262 (264)
T PRK12829 226 LGRMVEPEDIAATALFLASPAARY----------ITGQAISVDGNVE 262 (264)
T ss_pred CCCCCCHHHHHHHHHHHcCccccC----------ccCcEEEeCCCcc
Confidence 234899999999998887543211 2348999988753
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=184.35 Aligned_cols=227 Identities=14% Similarity=0.065 Sum_probs=159.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++++||||||+|+||.+++++|+++|++|++++|+.... ............+.++.+|++|.+++.++++++
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAA----ERVAAEILAGGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999954211 111111111245889999999999999988765
Q ss_pred --CccEEEEcccccCccc-----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY-----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... +.++++..+++|+.++..+++.+.. .+ .++||++||...++.
T Consensus 79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~---------- 147 (251)
T PRK07231 79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEG-GGAIVNVASTAGLRP---------- 147 (251)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhcCC----------
Confidence 6899999999743221 2344567899999997777776653 44 349999999876542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCCh--HHHHHHHHHcCCCCceeecCCCCcce
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMA--YFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|.+.+.+++.++.++ ++++++++||.+.++....... ........... ...
T Consensus 148 --~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 213 (251)
T PRK07231 148 --RPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLAT------------IPL 213 (251)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcC------------CCC
Confidence 1346789999999999999988764 8999999999997764221000 00111111111 112
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+++++|+|.+++.++...... ..|+.+.+.++.
T Consensus 214 ~~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~gg~ 248 (251)
T PRK07231 214 GRLGTPEDIANAALFLASDEASW----------ITGVTLVVDGGR 248 (251)
T ss_pred CCCcCHHHHHHHHHHHhCccccC----------CCCCeEEECCCc
Confidence 34789999999999998655421 224677776654
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-22 Score=187.95 Aligned_cols=234 Identities=13% Similarity=0.092 Sum_probs=159.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|++|||||+|+||++++++|+++|++|++++|+.+. ............++.++++|++|.+++.++++.+
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDL----GQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999984321 1111111112246889999999999999888754
Q ss_pred --CccEEEEcccccCcc------ccccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcc-cCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR------YAMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSV-YGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~------~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v-~g~~~~~~~~e~ 241 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+.. ...++|++||... ++.
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------- 162 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG--------- 162 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC---------
Confidence 679999999975321 1234567899999999999888775321 1238999988543 321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC---CC-hHHHHHHHHHc--CCCCceeecCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP---DM-AYFFFTRDILN--RKSIPIFESPD 312 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~---~~-~~~~~~~~~~~--g~~~~~~~~~~ 312 (439)
.....|+.+|++.|.+++.++.++ |+++++++||.|.++.... .. ........... ....+.
T Consensus 163 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----- 233 (280)
T PLN02253 163 ----LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNANL----- 233 (280)
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCCC-----
Confidence 224579999999999999998875 8999999999998763211 00 00001000000 000011
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccH
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPV 366 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~ 366 (439)
....++++|+|.+++.++...... ..|+.+++.+|...+.
T Consensus 234 ----~~~~~~~~dva~~~~~l~s~~~~~----------i~G~~i~vdgG~~~~~ 273 (280)
T PLN02253 234 ----KGVELTVDDVANAVLFLASDEARY----------ISGLNLMIDGGFTCTN 273 (280)
T ss_pred ----cCCCCCHHHHHHHHHhhcCccccc----------ccCcEEEECCchhhcc
Confidence 012467999999999987654321 3447888877654443
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-22 Score=190.03 Aligned_cols=231 Identities=16% Similarity=0.166 Sum_probs=158.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
.+|++|||||+|+||+++++.|+++|++|++++|+.+....... ..........+.++.+|++|.+++.+ +++.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLS-QATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-HHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 46789999999999999999999999999999984321111100 00011112468899999999999877 5442
Q ss_pred -CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCc-ccCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSS-VYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~-v~g~~~~~~~~e~~~ 243 (439)
++|+||||||...... +.++++..+++|+.++.++++.+ ++.+. ++||++||.. .++
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vsS~~~~~~------------ 146 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS-GKIINISSISGRVG------------ 146 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEECcccccCC------------
Confidence 5799999999754322 22345578899999988888875 44543 4999999964 332
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCC-----------hHHHHHHHHHcCCCCceee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDM-----------AYFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~-----------~~~~~~~~~~~g~~~~~~~ 309 (439)
..+...|+.+|.+.+.+++.++.+ +|++++++|||.++++...... .+......+....
T Consensus 147 -~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 219 (280)
T PRK06914 147 -FPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHI------ 219 (280)
T ss_pred -CCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHH------
Confidence 135678999999999999998744 5999999999999887422110 0001111111000
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHH
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVS 367 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~ 367 (439)
......+++++|+|++++.++++.... ..|+++++..+++.
T Consensus 220 ----~~~~~~~~~~~dva~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 260 (280)
T PRK06914 220 ----NSGSDTFGNPIDVANLIVEIAESKRPK-------------LRYPIGKGVKLMIL 260 (280)
T ss_pred ----hhhhhccCCHHHHHHHHHHHHcCCCCC-------------cccccCCchHHHHH
Confidence 011234788999999999999865531 46888876655543
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=182.24 Aligned_cols=212 Identities=17% Similarity=0.174 Sum_probs=152.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||.+++++|+++|++|++++|+.. ....... .....+.++.+|++|.+++.++++..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP------SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVE 76 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH------HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998321 1111111 11246889999999999999887753
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... ..++++..+++|+.++.++++++.+ .+..++||++||...+...
T Consensus 77 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~--------- 147 (248)
T TIGR01832 77 EFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG--------- 147 (248)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC---------
Confidence 5899999999754321 2345567899999999998888753 2223499999998766421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
.....|+.+|++.+.+++.+++++ |+++++|+||.|..+.................. .+ ...
T Consensus 148 ---~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~--~~----------~~~ 212 (248)
T TIGR01832 148 ---IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILER--IP----------AGR 212 (248)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhc--CC----------CCC
Confidence 234579999999999999999885 899999999999877432100000011111111 11 134
Q ss_pred eeeHHHHHHHHHHHHhhch
Q 013602 320 FTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~ 338 (439)
|+..+|+|++++.++....
T Consensus 213 ~~~~~dva~~~~~l~s~~~ 231 (248)
T TIGR01832 213 WGTPDDIGGPAVFLASSAS 231 (248)
T ss_pred CcCHHHHHHHHHHHcCccc
Confidence 7889999999999987544
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=188.31 Aligned_cols=226 Identities=17% Similarity=0.164 Sum_probs=157.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+++||||+|+||++++++|+++|++|++++|+.+.. ............+.++.+|++|+++++++++..
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAA----ERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHH----HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999953211 111111112346889999999999999988764
Q ss_pred --CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcc-cCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSV-YGLNTKVPFSEKD 242 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v-~g~~~~~~~~e~~ 242 (439)
++|+||||||...... ..++++..+++|+.++.++.+.+ ++.+. ++||++||... ++.
T Consensus 79 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~sS~~~~~~~---------- 147 (252)
T PRK06138 79 WGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGG-GSIVNTASQLALAGG---------- 147 (252)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCC-eEEEEECChhhccCC----------
Confidence 6799999999754321 23345567999999987766655 44553 49999999654 321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC---hHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM---AYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.+...|+.+|.+.+.+++.++.++ |+++++++||.++++...... .-.......... ...
T Consensus 148 ---~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 213 (252)
T PRK06138 148 ---RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRA-----------RHP 213 (252)
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHh-----------cCC
Confidence 345789999999999999998875 899999999999988432100 000000000100 011
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
...|++++|++++++.++..+... ..|..+.+.++
T Consensus 214 ~~~~~~~~d~a~~~~~l~~~~~~~----------~~g~~~~~~~g 248 (252)
T PRK06138 214 MNRFGTAEEVAQAALFLASDESSF----------ATGTTLVVDGG 248 (252)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcC----------ccCCEEEECCC
Confidence 123788999999999998776532 23367776544
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=187.91 Aligned_cols=212 Identities=18% Similarity=0.163 Sum_probs=147.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
++|+|+||||+|+||++++++|+++|++|++++|+.+ ..+.....++.++.+|++|.++++++++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~---------~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD---------KMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999998321 111122346889999999999999888754
Q ss_pred -CccEEEEcccccCccc----cccChhHHHHHHHHHH----HHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGL----VSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt----~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||...... +.++++..+++|+.++ ..+++.+++.+. ++||++||.+.+. .
T Consensus 73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS~~~~~------------~ 139 (273)
T PRK06182 73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISSMGGKI------------Y 139 (273)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcchhhcC------------C
Confidence 6799999999754322 3345678899999995 455555666653 3999999965321 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceee--------cCCC
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFE--------SPDH 313 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~ 313 (439)
......|+.+|.+.+.+++.++.+ +|+++++++||.|.++.... ....+........+. ....
T Consensus 140 ~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (273)
T PRK06182 140 TPLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDI------AADHLLKTSGNGAYAEQAQAVAASMRS 213 (273)
T ss_pred CCCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchh------hhhhhcccccccchHHHHHHHHHHHHH
Confidence 123457999999999999888765 48999999999998875320 000000000000000 0000
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhc
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
......+...+|+|++++.++...
T Consensus 214 ~~~~~~~~~~~~vA~~i~~~~~~~ 237 (273)
T PRK06182 214 TYGSGRLSDPSVIADAISKAVTAR 237 (273)
T ss_pred hhccccCCCHHHHHHHHHHHHhCC
Confidence 111234678999999999998754
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-21 Score=182.79 Aligned_cols=214 Identities=13% Similarity=0.071 Sum_probs=151.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+|+||||+|+||++++++|+++|++|++++|+.+. ......... ....+.++.+|++|.+++.++++.+
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEK----CEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEE 83 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999984321 111111111 1236788999999999999888754
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... +.+++...+++|+.++.++++.+. +.+ ..+||++||...+..
T Consensus 84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~-~g~iv~isS~~~~~~---------- 152 (274)
T PRK07775 84 ALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERR-RGDLIFVGSDVALRQ---------- 152 (274)
T ss_pred hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CceEEEECChHhcCC----------
Confidence 5799999999754321 223455678999999999988864 233 238999999876542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC--CChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP--DMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|++.|.+++.+++++ |++++++|||.+.++.... ......+..... .+ .....
T Consensus 153 --~~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~------~~----~~~~~ 220 (274)
T PRK07775 153 --RPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWA------KW----GQARH 220 (274)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHH------Hh----ccccc
Confidence 1235689999999999999998775 8999999999886553211 111111111111 11 11123
Q ss_pred eeeeeHHHHHHHHHHHHhhc
Q 013602 318 RDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~ 337 (439)
..|++++|+|++++.++..+
T Consensus 221 ~~~~~~~dva~a~~~~~~~~ 240 (274)
T PRK07775 221 DYFLRASDLARAITFVAETP 240 (274)
T ss_pred ccccCHHHHHHHHHHHhcCC
Confidence 45899999999999998764
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=181.11 Aligned_cols=208 Identities=16% Similarity=0.193 Sum_probs=153.0
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh--cCCeEEEEcccCCHHHHHHhhcc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE--RSGIFIVEGDINDMALLKKLFDV- 172 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~- 172 (439)
.+.+++++|||||++||.++|++|+++|++|+++.|+.++.. ....+... .-.+.++.+|++|++++.++.+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~----~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l 78 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLE----ALAKELEDKTGVEVEVIPADLSDPEALERLEDEL 78 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHH----HHHHHHHHhhCceEEEEECcCCChhHHHHHHHHH
Confidence 367889999999999999999999999999999999443221 11122222 23678999999999998887764
Q ss_pred ----cCccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 173 ----VSFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 173 ----~~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
..+|++|||||...... +++.-++.+++|+.++..|..++ .+.+. .+||+++|.+-|-
T Consensus 79 ~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~-G~IiNI~S~ag~~--------- 148 (265)
T COG0300 79 KERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGA-GHIINIGSAAGLI--------- 148 (265)
T ss_pred HhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEechhhcC---------
Confidence 25799999999865532 23344579999999966665554 45443 3999999977652
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
+.+-.+.|++||+..-.|...++.|. |+.|.+|.||.+..+..+. .+..... ....
T Consensus 149 ---p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~------------~~~~~~~------~~~~ 207 (265)
T COG0300 149 ---PTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDA------------KGSDVYL------LSPG 207 (265)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccccc------------ccccccc------ccch
Confidence 21335789999999999999998884 8999999999998764320 1111111 1123
Q ss_pred eeeeeHHHHHHHHHHHHhhch
Q 013602 318 RDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~ 338 (439)
.-++..+|+|++.+..++...
T Consensus 208 ~~~~~~~~va~~~~~~l~~~k 228 (265)
T COG0300 208 ELVLSPEDVAEAALKALEKGK 228 (265)
T ss_pred hhccCHHHHHHHHHHHHhcCC
Confidence 347889999999999998766
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=182.77 Aligned_cols=228 Identities=13% Similarity=0.040 Sum_probs=158.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+++||||||+|+||++++++|+++|++|++..|... .......... .....+.++.+|+++.+++.+++++.
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRA---EEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCh---HHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999988876321 1111111111 11235678899999999998887764
Q ss_pred ---CccEEEEcccccCcccc----ccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRYA----MQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||....... .+..+..+++|+.++.++++++.+.- ..++||++||...+.. .
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~ 148 (252)
T PRK06077 81 RYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRP------------A 148 (252)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCC------------C
Confidence 67999999997433221 22235778999999999888886531 1248999999876531 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCCh-HHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDMA-YFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.+...|+.+|++.|.+++.+++++ ++++++++||.|.++....... .......... .......+++
T Consensus 149 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 217 (252)
T PRK06077 149 YGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAE-----------KFTLMGKILD 217 (252)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHH-----------hcCcCCCCCC
Confidence 456899999999999999998886 7899999999998764310000 0000000000 0011235899
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
++|+|++++.++.... ..+++|++.++.
T Consensus 218 ~~dva~~~~~~~~~~~------------~~g~~~~i~~g~ 245 (252)
T PRK06077 218 PEEVAEFVAAILKIES------------ITGQVFVLDSGE 245 (252)
T ss_pred HHHHHHHHHHHhCccc------------cCCCeEEecCCe
Confidence 9999999999987443 234899998875
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=180.98 Aligned_cols=224 Identities=19% Similarity=0.169 Sum_probs=160.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
+++++++||||+|+||.++++.|+++|++|++++|+.+ .. .+.....++.++.+|++|.+++.++++.. ++
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~-------~~-~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAA-------AL-DRLAGETGCEPLRLDVGDDAAIRAALAAAGAF 78 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHH-------HH-HHHHHHhCCeEEEecCCCHHHHHHHHHHhCCC
Confidence 57789999999999999999999999999999998321 11 11112225678899999999999988864 47
Q ss_pred cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 176 d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p 247 (439)
|+||||||..... ...++++..+++|+.++.++++++.+. +..++||++||...+.. ..+
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~ 146 (245)
T PRK07060 79 DGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVG------------LPD 146 (245)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCC------------CCC
Confidence 9999999975432 123445677889999999999888643 21249999999765432 134
Q ss_pred CChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
...|+.+|.++|.+++.++.++ ++++++++||.++++..............+... .....|++++
T Consensus 147 ~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 214 (245)
T PRK07060 147 HLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAA------------IPLGRFAEVD 214 (245)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhc------------CCCCCCCCHH
Confidence 5789999999999999998764 899999999999988532110000111111111 1123488999
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
|++++++.++..+... ..|+.+++.+|.
T Consensus 215 d~a~~~~~l~~~~~~~----------~~G~~~~~~~g~ 242 (245)
T PRK07060 215 DVAAPILFLLSDAASM----------VSGVSLPVDGGY 242 (245)
T ss_pred HHHHHHHHHcCcccCC----------ccCcEEeECCCc
Confidence 9999999998765422 244888887653
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-21 Score=179.84 Aligned_cols=225 Identities=15% Similarity=0.123 Sum_probs=159.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+++++||||+|+||.+++++|+++|++|+++.+... ........... ...++.++++|++|.+++.++++++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK---EAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVN 80 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH---HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999999999988765221 11111111111 1236889999999999999988874
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... ..++++..+++|+.++.++++++.. .+ .++||++||...+..
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~---------- 149 (247)
T PRK12935 81 HFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAE-EGRIISISSIIGQAG---------- 149 (247)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcchhhcCC----------
Confidence 5799999999754321 2245667899999999999888864 33 239999999654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|.+.+.+++.++.++ ++++++++||.|.++.... ...........+ ...+.
T Consensus 150 --~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~--~~~~~~~~~~~~------------~~~~~ 213 (247)
T PRK12935 150 --GFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAE--VPEEVRQKIVAK------------IPKKR 213 (247)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhh--ccHHHHHHHHHh------------CCCCC
Confidence 1346789999999999999988774 8999999999998763221 000111111111 12345
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+.+++|++++++.++..... ..|+.||+.++.
T Consensus 214 ~~~~edva~~~~~~~~~~~~-----------~~g~~~~i~~g~ 245 (247)
T PRK12935 214 FGQADEIAKGVVYLCRDGAY-----------ITGQQLNINGGL 245 (247)
T ss_pred CcCHHHHHHHHHHHcCcccC-----------ccCCEEEeCCCc
Confidence 79999999999998864321 234899998763
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=185.26 Aligned_cols=260 Identities=20% Similarity=0.221 Sum_probs=170.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHH--------hhhcCCeEEEEcccC------CHH
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQA--------LLERSGIFIVEGDIN------DMA 164 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~v~~~~~Dl~------d~~ 164 (439)
++||+||||||+|.+++.+|+.+- .+|+++.|-.+... ...+.++. .....+|+++.+|++ +..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~-a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~ 79 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEA-ALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER 79 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHH-HHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence 479999999999999999999775 59999999443211 11111111 123468999999998 456
Q ss_pred HHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCC----CCC
Q 013602 165 LLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVP----FSE 240 (439)
Q Consensus 165 ~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~----~~e 240 (439)
.++++.+.+ |.|||||+..+. ...+......|+.||..++++|....++ .++|+||++|+....... .++
T Consensus 80 ~~~~La~~v--D~I~H~gA~Vn~---v~pYs~L~~~NVlGT~evlrLa~~gk~K-p~~yVSsisv~~~~~~~~~~~~~~~ 153 (382)
T COG3320 80 TWQELAENV--DLIIHNAALVNH---VFPYSELRGANVLGTAEVLRLAATGKPK-PLHYVSSISVGETEYYSNFTVDFDE 153 (382)
T ss_pred HHHHHhhhc--ceEEecchhhcc---cCcHHHhcCcchHhHHHHHHHHhcCCCc-eeEEEeeeeeccccccCCCcccccc
Confidence 788999888 999999997543 3566788899999999999999988754 799999999976433222 222
Q ss_pred CCCC----CCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC----CCChHHHHHHHHHcCCCCceeecCC
Q 013602 241 KDRT----DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR----PDMAYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 241 ~~~~----~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
+++. ..+.++|+.||+++|.+++++..+ |++++|+|||.|.|.... ...++..++..+++-+.+|..
T Consensus 154 ~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P~~---- 228 (382)
T COG3320 154 ISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAPDS---- 228 (382)
T ss_pred ccccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCCCc----
Confidence 2221 124589999999999999999987 999999999999998652 122344555555555544422
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhchh-ccCCCCCccCCCCCcEEE-ecCCCcccHHHHHHHHHH
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAEK-STGSGGKKRGRAQLRVFN-LGNTSPVPVSDLVSILER 375 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~-i~~~~~~t~~el~~~l~~ 375 (439)
....+-+.++++++++........+ ...-+. .++.....|+ ..-+..+.+.++.+-+.+
T Consensus 229 --~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~--~~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 229 --EYSLDMLPVDHVARAVVAPSVQVAEAIAALGA--HSDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred --ccchhhCccceeeEEeehhhhhHHHHHHHhcc--CccchhhheecccCCCccchhHHHHhHhh
Confidence 1222223333333222222211110 000000 0112234454 223778899999888877
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=180.95 Aligned_cols=217 Identities=14% Similarity=0.091 Sum_probs=159.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||.+++++|+++|++|++++|+.... ..........++.++.+|+.|.+++.+++++.
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~-----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPL-----SQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQ 79 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhH-----HHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999954211 11111222346788899999999998888754
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+|||+||..... ...+++...+++|+.++.++++++. +.+ .++||++||...++..
T Consensus 80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~---------- 148 (239)
T PRK12828 80 FGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASG-GGRIVNIGAGAALKAG---------- 148 (239)
T ss_pred hCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcC-CCEEEEECchHhccCC----------
Confidence 579999999964321 1223345678899999999888874 334 4499999998876421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
.+...|+.+|.+.+.+++.++.+ .+++++++|||.++++..... .+. .....|
T Consensus 149 --~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~---------------~~~-------~~~~~~ 204 (239)
T PRK12828 149 --PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRAD---------------MPD-------ADFSRW 204 (239)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhc---------------CCc-------hhhhcC
Confidence 34578999999999999888765 489999999999998732100 000 112237
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
++++|+|++++.++...... ..|+.+++.++..
T Consensus 205 ~~~~dva~~~~~~l~~~~~~----------~~g~~~~~~g~~~ 237 (239)
T PRK12828 205 VTPEQIAAVIAFLLSDEAQA----------ITGASIPVDGGVA 237 (239)
T ss_pred CCHHHHHHHHHHHhCccccc----------ccceEEEecCCEe
Confidence 99999999999998754321 2347888887654
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=184.79 Aligned_cols=233 Identities=15% Similarity=0.111 Sum_probs=155.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||+++++.|+++|++|++++|+.+..+....... .......+.++.+|++|++++.+++++.
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLG-KEFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHH-hhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999984432111111100 1112235677899999999999988864
Q ss_pred --CccEEEEcccccCc-------cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV-------RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~-------~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+|||||+.... ....+.....+++|+.++..+++++ ++.+. ++||++||.+.+..... ...+
T Consensus 81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~~~~~-~~~~ 158 (256)
T PRK09186 81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGG-GNLVNISSIYGVVAPKF-EIYE 158 (256)
T ss_pred cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCC-ceEEEEechhhhccccc-hhcc
Confidence 37999999975321 1122345578899998876665554 44443 49999999665432211 1122
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
+... .....|+.+|.+.+.+++.++++ .++++++++||.++++... .+........ + .
T Consensus 159 ~~~~-~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~------~~~~~~~~~~--~----------~ 219 (256)
T PRK09186 159 GTSM-TSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPE------AFLNAYKKCC--N----------G 219 (256)
T ss_pred cccc-CCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCH------HHHHHHHhcC--C----------c
Confidence 2222 22347999999999999988887 3799999999998765321 1222111111 1 1
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+++++|+|++++.++...... ..|+.+.+.++
T Consensus 220 ~~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~~g 253 (256)
T PRK09186 220 KGMLDPDDICGTLVFLLSDQSKY----------ITGQNIIVDDG 253 (256)
T ss_pred cCCCCHHHhhhhHhheecccccc----------ccCceEEecCC
Confidence 13688999999999998755432 22367777665
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=198.18 Aligned_cols=238 Identities=14% Similarity=0.093 Sum_probs=162.3
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh------hcCCeEEEEcccCCHHHHHHh
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL------ERSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~v~~~~~Dl~d~~~~~~~ 169 (439)
..++++||||||+|+||++++++|+++|++|++++|+.+.............+ ...++.++.+|++|.+++.++
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 35789999999999999999999999999999999954321111000000000 013588999999999999999
Q ss_pred hcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 013602 170 FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPAS 249 (439)
Q Consensus 170 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~ 249 (439)
+.++ |+||||||.... ...+....+++|+.|+.++++++++.+.. +||++||.+++... .... .. ....
T Consensus 157 Lggi--DiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VSSiga~~~g----~p~~-~~-~sk~ 225 (576)
T PLN03209 157 LGNA--SVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVTSLGTNKVG----FPAA-IL-NLFW 225 (576)
T ss_pred hcCC--CEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEccchhcccC----cccc-ch-hhHH
Confidence 9877 999999986431 12245677899999999999999998854 99999998763110 0000 01 2345
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHH
Q 013602 250 LYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a 329 (439)
.|...|..+|..+.. .|+++++||||.++++.+... ....+... .........+..+|||++
T Consensus 226 ~~~~~KraaE~~L~~----sGIrvTIVRPG~L~tp~d~~~-----------~t~~v~~~---~~d~~~gr~isreDVA~v 287 (576)
T PLN03209 226 GVLCWKRKAEEALIA----SGLPYTIVRPGGMERPTDAYK-----------ETHNLTLS---EEDTLFGGQVSNLQVAEL 287 (576)
T ss_pred HHHHHHHHHHHHHHH----cCCCEEEEECCeecCCccccc-----------cccceeec---cccccCCCccCHHHHHHH
Confidence 677888888887764 599999999999998754310 00111111 011111235889999999
Q ss_pred HHHHHhhchhccCCCCCccCCCCCcEEEecCCCc---ccHHHHHHHH
Q 013602 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP---VPVSDLVSIL 373 (439)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~t~~el~~~l 373 (439)
++.++.++... .+++|.+.++.. .++.++++.+
T Consensus 288 VvfLasd~~as-----------~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 288 MACMAKNRRLS-----------YCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHcCchhc-----------cceEEEEEeCCCCCCCCHHHHHHhc
Confidence 99998866532 238999998653 3444444443
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-21 Score=184.07 Aligned_cols=228 Identities=14% Similarity=0.132 Sum_probs=163.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||.+++++|+++|++|++++|+.... ........ ....++.++.+|++|.+++.++++..
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHED---ANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchH---HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999854321 11111111 11236789999999999998888764
Q ss_pred ---CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCKNA-NPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... .+.+++...+++|+.++.++++++.+. ....+||++||...|...
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~----------- 189 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGN----------- 189 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCC-----------
Confidence 679999999974321 123345678999999999999998753 112399999998876421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|+++...... .......+.. ......+.
T Consensus 190 -~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~-~~~~~~~~~~------------~~~~~~~~ 255 (290)
T PRK06701 190 -ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDF-DEEKVSQFGS------------NTPMQRPG 255 (290)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCccccccc-CHHHHHHHHh------------cCCcCCCc
Confidence 234679999999999999999875 899999999999987432111 1111111111 11223478
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+++|+|++++.++...... ..|.++++.++.
T Consensus 256 ~~~dva~~~~~ll~~~~~~----------~~G~~i~idgg~ 286 (290)
T PRK06701 256 QPEELAPAYVFLASPDSSY----------ITGQMLHVNGGV 286 (290)
T ss_pred CHHHHHHHHHHHcCcccCC----------ccCcEEEeCCCc
Confidence 8999999999998765421 234788887754
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=182.25 Aligned_cols=227 Identities=15% Similarity=0.117 Sum_probs=155.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+++||||+|+||.+++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.++++++++++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAE----LDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVE 79 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999995431 111111111 1246888999999999998888754
Q ss_pred ---CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++.+..+++|+.++..+.++ +++.+. ++||++||...+..
T Consensus 80 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~-~~iv~~sS~~~~~~--------- 149 (254)
T PRK07478 80 RFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGG-GSLIFTSTFVGHTA--------- 149 (254)
T ss_pred hcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEechHhhcc---------
Confidence 68999999997432 122345568899999987766554 444443 38999999765421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
...+...|+.+|++.+.+++.+++++ |+++++|+||.|..+..............+....+ ..
T Consensus 150 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 215 (254)
T PRK07478 150 --GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLHA------------LK 215 (254)
T ss_pred --CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcCC------------CC
Confidence 11345789999999999999998875 79999999999977632211000011111111111 11
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.+...+|+|++++.++...... ..|+++.+.++
T Consensus 216 ~~~~~~~va~~~~~l~s~~~~~----------~~G~~~~~dgg 248 (254)
T PRK07478 216 RMAQPEEIAQAALFLASDAASF----------VTGTALLVDGG 248 (254)
T ss_pred CCcCHHHHHHHHHHHcCchhcC----------CCCCeEEeCCc
Confidence 2467899999999988654321 23477777654
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-21 Score=181.49 Aligned_cols=226 Identities=15% Similarity=0.147 Sum_probs=159.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
|+|+||||+|+||+++++.|+++|++|++++|.... ......... ....++.++.+|++|.+++.++++.+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDE---ELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWG 79 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchh---HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999985321 111111111 11246889999999999998888765
Q ss_pred CccEEEEcccccCcc------ccccChhHHHHHHHHHHHHHHHHHHhc----CC-----CCeEEEecCCcccCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVR------YAMQNPNSYVHSNIAGLVSLLEVCKNA----NP-----QPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~------~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~-----~~~~V~~SS~~v~g~~~~~~~ 238 (439)
++|+||||||..... .+.++++..+++|+.++.++++++.+. .. .++||++||...+..
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------ 153 (256)
T PRK12745 80 RIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMV------ 153 (256)
T ss_pred CCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccC------
Confidence 689999999974321 123455678999999999998887532 11 347999999665321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
..+.+.|+.+|.+.|.+++.++.+ +|+++++++||.++++..... ...+.. .+.....+
T Consensus 154 ------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~--~~~~~~-~~~~~~~~--------- 215 (256)
T PRK12745 154 ------SPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPV--TAKYDA-LIAKGLVP--------- 215 (256)
T ss_pred ------CCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCcccccc--chhHHh-hhhhcCCC---------
Confidence 134578999999999999999876 589999999999998754311 111111 11111111
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
...|.+++|+++++..++...... ..|++|++.++..
T Consensus 216 -~~~~~~~~d~a~~i~~l~~~~~~~----------~~G~~~~i~gg~~ 252 (256)
T PRK12745 216 -MPRWGEPEDVARAVAALASGDLPY----------STGQAIHVDGGLS 252 (256)
T ss_pred -cCCCcCHHHHHHHHHHHhCCcccc----------cCCCEEEECCCee
Confidence 224778999999999887644321 2348999988654
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-21 Score=180.04 Aligned_cols=225 Identities=18% Similarity=0.114 Sum_probs=156.6
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
..++|+|+||||+|+||+++++.|+++|++|++++|+.+. ........ ...+.++++|++|.+++.++++..
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~-----~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRER-----GSKVAKAL-GENAWFIAMDVADEAQVAAGVAEVLG 80 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHH-----HHHHHHHc-CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999883321 11111111 246889999999999987776654
Q ss_pred ---CccEEEEcccccCcc------ccccChhHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR------YAMQNPNSYVHSNIAGLVSLLEVCKNA--NPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~------~~~~~~~~~~~~Nv~gt~~ll~~~~~~--~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... ...++++..+++|+.++.++++++.+. ...++||++||...+..
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~---------- 150 (255)
T PRK05717 81 QFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQS---------- 150 (255)
T ss_pred HhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCC----------
Confidence 579999999975431 123445689999999999999998642 11238999999665321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
......|+.+|++.+.+++.++.++ ++++++|+||.+.++....... ..+.. .... ..+. ..+
T Consensus 151 --~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~-~~~~~-~~~~-~~~~----------~~~ 215 (255)
T PRK05717 151 --EPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRA-EPLSE-ADHA-QHPA----------GRV 215 (255)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccc-hHHHH-HHhh-cCCC----------CCC
Confidence 1234689999999999999998886 5899999999999874321110 01110 0111 1111 135
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.+++|++.+++.++...... ..|+.+.+.++
T Consensus 216 ~~~~~va~~~~~l~~~~~~~----------~~g~~~~~~gg 246 (255)
T PRK05717 216 GTVEDVAAMVAWLLSRQAGF----------VTGQEFVVDGG 246 (255)
T ss_pred cCHHHHHHHHHHHcCchhcC----------ccCcEEEECCC
Confidence 68899999999887643321 23467777554
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=184.14 Aligned_cols=223 Identities=15% Similarity=0.110 Sum_probs=149.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+|+||||+|+||.+++++|+++|++|++++|+.+. ....... ..++.++.+|++|.++++++++.+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~-----~~~~~~~--l~~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDV-----AREALAG--IDGVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHHHH--hhhCeEEEccCCCHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999994321 1111111 124889999999999999888653
Q ss_pred --CccEEEEcccccCcc--ccccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCC--CC
Q 013602 174 --SFTHVMHLAAQAGVR--YAMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEK--DR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~--~~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~--~~ 243 (439)
++|+||||||..... .+.++.+..+++|+.|+.+++++ +++.+. .+||++||.+..... ..+.+. ..
T Consensus 97 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~-~~iV~vSS~~~~~~~--~~~~~~~~~~ 173 (315)
T PRK06196 97 GRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAG-ARVVALSSAGHRRSP--IRWDDPHFTR 173 (315)
T ss_pred CCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEECCHHhccCC--CCccccCccC
Confidence 579999999975332 23445678899999996555554 445543 399999997543211 111111 11
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
...+...|+.||++.+.+++.+++++ |+++++|+||.|.++.....................++. ..+
T Consensus 174 ~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 244 (315)
T PRK06196 174 GYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGNPID---------PGF 244 (315)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhhhhh---------hhc
Confidence 11345789999999999999988764 899999999999988543111000000000000000110 024
Q ss_pred eeHHHHHHHHHHHHhhch
Q 013602 321 TYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~ 338 (439)
...+|+|..++.++..+.
T Consensus 245 ~~~~~~a~~~~~l~~~~~ 262 (315)
T PRK06196 245 KTPAQGAATQVWAATSPQ 262 (315)
T ss_pred CCHhHHHHHHHHHhcCCc
Confidence 567999999999986543
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=180.58 Aligned_cols=225 Identities=12% Similarity=0.128 Sum_probs=156.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|++|||||+++||++++++|+++|++|++++|... ....... ....++.++.+|++|.+++.++++..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA------PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVE 79 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH------HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999987321 1111111 12346889999999999999988764
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|++|||||..... .+.++++..+++|+.++..+.+++.+ .+...+||++||...+...
T Consensus 80 ~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------- 150 (251)
T PRK12481 80 VMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGG--------- 150 (251)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCC---------
Confidence 689999999975432 23455678899999998888877643 3322499999997654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
.....|+.+|.+.+.+++.++.+ +|+++++|+||.|-.+..............+... ++. ..
T Consensus 151 ---~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~--~p~----------~~ 215 (251)
T PRK12481 151 ---IRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILER--IPA----------SR 215 (251)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhc--CCC----------CC
Confidence 23468999999999999999886 4899999999999765321100000111111111 111 12
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|+|.+++.++...... ..|+++.+.++
T Consensus 216 ~~~peeva~~~~~L~s~~~~~----------~~G~~i~vdgg 247 (251)
T PRK12481 216 WGTPDDLAGPAIFLSSSASDY----------VTGYTLAVDGG 247 (251)
T ss_pred CcCHHHHHHHHHHHhCccccC----------cCCceEEECCC
Confidence 567899999999998654422 33477777554
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-21 Score=179.23 Aligned_cols=223 Identities=17% Similarity=0.156 Sum_probs=160.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+||||||+|+||.+++++|+++|++|++++|+.. ... .........+.++.+|++|.+++.+++++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~-----~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 86 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED-----VAE-VAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISA 86 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH-----HHH-HHHHhhCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999432 111 111122345778999999999999888764
Q ss_pred --CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcc-cCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSV-YGLNTKVPFSEKD 242 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v-~g~~~~~~~~e~~ 242 (439)
++|+||||||...... ..++++..+++|+.++.++++++... + .++||++||... ++.
T Consensus 87 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~---------- 155 (255)
T PRK06841 87 FGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAG-GGKIVNLASQAGVVAL---------- 155 (255)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC-CceEEEEcchhhccCC----------
Confidence 6799999999754321 22345578999999999999987642 3 349999999653 221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
.....|+.+|.+.+.+++.+++++ |+++++|+||.|..+...... .........++ ++ ...
T Consensus 156 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~-~~~~~~~~~~~--~~----------~~~ 219 (255)
T PRK06841 156 ---ERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAW-AGEKGERAKKL--IP----------AGR 219 (255)
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCccccccc-chhHHHHHHhc--CC----------CCC
Confidence 235689999999999999998874 899999999999877432110 00111111111 11 124
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+.+++|++++++.++...... ..|+++.+.++.
T Consensus 220 ~~~~~~va~~~~~l~~~~~~~----------~~G~~i~~dgg~ 252 (255)
T PRK06841 220 FAYPEEIAAAALFLASDAAAM----------ITGENLVIDGGY 252 (255)
T ss_pred CcCHHHHHHHHHHHcCccccC----------ccCCEEEECCCc
Confidence 778999999999998765432 234788887664
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=180.44 Aligned_cols=224 Identities=13% Similarity=0.071 Sum_probs=160.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|++|||||+|+||++++++|+++|++|++++|+.+. .....++.++++|++|.+++.++++.+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-----------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 72 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-----------TVDGRPAEFHAADVRDPDQVAALVDAIVER 72 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-----------hhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999994321 112346889999999999999888765
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... ...++++..+++|+.++.++++++.+ .....+||++||...+.
T Consensus 73 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------ 140 (252)
T PRK07856 73 HGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR------------ 140 (252)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC------------
Confidence 689999999974322 22334567899999999999998754 22224899999976532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
+......|+.+|.+.+.+++.++.++ .+++++|+||.|..+.......-......+....+ ...+.
T Consensus 141 ~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 208 (252)
T PRK07856 141 PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVP------------LGRLA 208 (252)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCHHHHHHHhhcCC------------CCCCc
Confidence 11345789999999999999999875 38999999999987632110000011111111111 11245
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
..+|++.+++.++...... ..|+.+.+.++...+
T Consensus 209 ~p~~va~~~~~L~~~~~~~----------i~G~~i~vdgg~~~~ 242 (252)
T PRK07856 209 TPADIAWACLFLASDLASY----------VSGANLEVHGGGERP 242 (252)
T ss_pred CHHHHHHHHHHHcCcccCC----------ccCCEEEECCCcchH
Confidence 7899999999988654321 345888887765443
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=180.44 Aligned_cols=225 Identities=14% Similarity=0.068 Sum_probs=158.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+... .....+.++++|++|.++++++++..
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~------------~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD------------DLPEGVEFVAADLTTAEGCAAVARAVLER 74 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh------------hcCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 11346889999999999988777654
Q ss_pred --CccEEEEcccccCc------cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++++..+++|+.++.++++++ ++.+. ++||++||...+..
T Consensus 75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~ii~isS~~~~~~--------- 144 (260)
T PRK06523 75 LGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGS-GVIIHVTSIQRRLP--------- 144 (260)
T ss_pred cCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-cEEEEEecccccCC---------
Confidence 57999999996421 1234456788999999987776655 34443 48999999765421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC---------ChHHHHHHHHHcC-CCCcee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD---------MAYFFFTRDILNR-KSIPIF 308 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~---------~~~~~~~~~~~~g-~~~~~~ 308 (439)
...+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .........+.+. ..++.
T Consensus 145 --~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~- 221 (260)
T PRK06523 145 --LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGIPL- 221 (260)
T ss_pred --CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccCcc-
Confidence 11246789999999999999998774 89999999999998743200 0000011111100 01111
Q ss_pred ecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 309 ESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 309 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
..+...+|++.+++.++...... ..|+.+.+.++...|
T Consensus 222 ---------~~~~~~~~va~~~~~l~s~~~~~----------~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 222 ---------GRPAEPEEVAELIAFLASDRAAS----------ITGTEYVIDGGTVPT 259 (260)
T ss_pred ---------CCCCCHHHHHHHHHHHhCccccc----------ccCceEEecCCccCC
Confidence 12456899999999998654321 334788888776544
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-21 Score=180.40 Aligned_cols=228 Identities=15% Similarity=0.163 Sum_probs=161.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||.++++.|+++|++|++++|+.+. ......+.. ...++.++.+|++|.+++.++++..
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA----ANHVVDEIQQLGGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999984321 111111111 1236788999999999998887654
Q ss_pred ---CccEEEEcccccCcc---ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR---YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~---~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... ...++++..+++|+.++.++++++.. .+ ..+||++||.....
T Consensus 85 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~------------ 151 (255)
T PRK06113 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAEN------------ 151 (255)
T ss_pred HcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC-CcEEEEEecccccC------------
Confidence 679999999975432 22344567799999999999999863 33 23999999966421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
...+...|+.+|.+.+.+++.++.+ .|+++++|+||.+..+.... .....+.....+..+. ..+
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~-~~~~~~~~~~~~~~~~------------~~~ 218 (255)
T PRK06113 152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS-VITPEIEQKMLQHTPI------------RRL 218 (255)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccc-ccCHHHHHHHHhcCCC------------CCC
Confidence 1134578999999999999999876 38999999999998764321 1112222222222221 125
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
...+|++.+++.++...... ..|+++++.++...
T Consensus 219 ~~~~d~a~~~~~l~~~~~~~----------~~G~~i~~~gg~~~ 252 (255)
T PRK06113 219 GQPQDIANAALFLCSPAASW----------VSGQILTVSGGGVQ 252 (255)
T ss_pred cCHHHHHHHHHHHcCccccC----------ccCCEEEECCCccc
Confidence 67899999999998644321 34588998887543
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-21 Score=177.76 Aligned_cols=211 Identities=21% Similarity=0.213 Sum_probs=150.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+|+||||+|+||++++++|+++|++|++++|+.+ ..... .+.. ...+.++++|++|.+++.++++.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~----~~~~~-~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPA----SLEAA-RAEL-GESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHH----HHHHH-HHHh-CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998421 11111 1111 236788999999999887776643
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecC-CcccCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASS-SSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS-~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||..... .+.++++..+++|+.++.++++++.+.- ...++|++|| .+.|+.
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~------------- 144 (249)
T PRK06500 78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM------------- 144 (249)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC-------------
Confidence 579999999975432 2334566899999999999999997521 1237777777 444441
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCC----CCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGR----PDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
.....|+.+|.+.|.+++.++.++ |+++++++||.+++|... .......+...+..+.+...
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 213 (249)
T PRK06500 145 PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLGR----------- 213 (249)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCCC-----------
Confidence 245789999999999999988764 899999999999987321 11112223333333322222
Q ss_pred eeeeHHHHHHHHHHHHhhch
Q 013602 319 DFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~ 338 (439)
+..++|++++++.++....
T Consensus 214 -~~~~~~va~~~~~l~~~~~ 232 (249)
T PRK06500 214 -FGTPEEIAKAVLYLASDES 232 (249)
T ss_pred -CcCHHHHHHHHHHHcCccc
Confidence 3578999999999886443
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-21 Score=178.57 Aligned_cols=224 Identities=18% Similarity=0.150 Sum_probs=155.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+++||||+|+||.+++++|+++|++|+++++... . ..+.....++.++.+|++|.++++++++..
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~----~----~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE----N----EAKELREKGVFTIKCDVGNRDQVKKSKEVVEKE 76 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH----H----HHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999876331 0 111112236889999999999999988764
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.++..+.+. +++.+ .++||++||...++.
T Consensus 77 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS~~~~~~----------- 144 (255)
T PRK06463 77 FGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIASNAGIGT----------- 144 (255)
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHHhCCC-----------
Confidence 689999999974321 23345568899999996555444 44444 349999999776531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC---CChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP---DMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
.......|+.+|++.+.+++.++.++ |+++++|+||.|..+-... ......+...+....+ .
T Consensus 145 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------~ 212 (255)
T PRK06463 145 AAEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTV------------L 212 (255)
T ss_pred CCCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCC------------c
Confidence 11234679999999999999998874 8999999999986653210 0000111111111111 1
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+...+|++.+++.++...... ..|+.+.+.++.
T Consensus 213 ~~~~~~~~va~~~~~l~s~~~~~----------~~G~~~~~dgg~ 247 (255)
T PRK06463 213 KTTGKPEDIANIVLFLASDDARY----------ITGQVIVADGGR 247 (255)
T ss_pred CCCcCHHHHHHHHHHHcChhhcC----------CCCCEEEECCCe
Confidence 22467899999999998655422 234788887654
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=176.69 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=158.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++++|||||+|+||++++++|+++|++|++++|+.+. ......... ...++.++.+|++|.++++++++..
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREA----AEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQA 77 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHH----HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999984321 111111111 1346889999999999999888753
Q ss_pred --CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||...... +.++.+..+++|+.++.++++++. +.+. ++||++||...+...
T Consensus 78 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~iss~~~~~~~---------- 146 (250)
T TIGR03206 78 LGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGA-GRIVNIASDAARVGS---------- 146 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-eEEEEECchhhccCC----------
Confidence 4799999998643211 223345679999999998888774 3443 499999998766421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.....|+.+|++.+.+++.++++. ++++++++||.++++..... .....+...+....+.
T Consensus 147 --~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 213 (250)
T TIGR03206 147 --SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPL----------- 213 (250)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCc-----------
Confidence 235689999999999999998874 89999999999998732100 0000112222222111
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+...+|+|+++..++...... ..|+++++.++
T Consensus 214 -~~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~~g 247 (250)
T TIGR03206 214 -GRLGQPDDLPGAILFFSSDDASF----------ITGQVLSVSGG 247 (250)
T ss_pred -cCCcCHHHHHHHHHHHcCcccCC----------CcCcEEEeCCC
Confidence 12456799999999987754321 34589999765
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=187.82 Aligned_cols=188 Identities=18% Similarity=0.135 Sum_probs=143.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
..+++++|||||++||.++|++|+++|++|++.+|+.+........... ......+.++++|++|.++++++++.+
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~-~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQK-GKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 6779999999999999999999999999999999976544433333322 234567889999999999999998876
Q ss_pred --CccEEEEcccccCccc--cccChhHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC-C
Q 013602 174 --SFTHVMHLAAQAGVRY--AMQNPNSYVHSNIAG----LVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR-T 244 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~--~~~~~~~~~~~Nv~g----t~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~-~ 244 (439)
+.|++|||||++.... +.++.+..+.+|+.| +..|++.++++.. .|||++||........-..+..+.. .
T Consensus 112 ~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~-~RIV~vsS~~~~~~~~~~~l~~~~~~~ 190 (314)
T KOG1208|consen 112 EGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP-SRIVNVSSILGGGKIDLKDLSGEKAKL 190 (314)
T ss_pred CCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC-CCEEEEcCccccCccchhhccchhccC
Confidence 6899999999976643 567889999999999 5555666676665 4999999977511111112221111 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCC
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWG 286 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~ 286 (439)
......|+.||++...++.++++++ |+.++.++||.|.++.-
T Consensus 191 ~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l 234 (314)
T KOG1208|consen 191 YSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGL 234 (314)
T ss_pred ccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccce
Confidence 1223369999999999999999986 79999999999988743
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=180.50 Aligned_cols=227 Identities=17% Similarity=0.111 Sum_probs=159.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|++|||||+|+||.+++++|+++|++|++++|+. .......+.++++|++|.+++.++++++
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~------------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF------------LTQEDYPFATFVLDVSDAAAVAQVCQRLLAE 73 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch------------hhhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999832 1112346889999999999999988764
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.+++...+++|+.++.++++++.. .+ .++||++||.....
T Consensus 74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~~ss~~~~~------------ 140 (252)
T PRK08220 74 TGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQR-SGAIVTVGSNAAHV------------ 140 (252)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECCchhcc------------
Confidence 479999999975432 13345678899999999999988753 33 23899999976432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
+..+...|+.+|.+.+.+++.++++ +|+++++++||.|+++.................+..... ........+
T Consensus 141 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 216 (252)
T PRK08220 141 PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQF----KLGIPLGKI 216 (252)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHH----hhcCCCccc
Confidence 1134678999999999999999887 589999999999999843210000000000000000000 001122357
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
++++|+|++++.++...... ..|+++.+.+|.
T Consensus 217 ~~~~dva~~~~~l~~~~~~~----------~~g~~i~~~gg~ 248 (252)
T PRK08220 217 ARPQEIANAVLFLASDLASH----------ITLQDIVVDGGA 248 (252)
T ss_pred CCHHHHHHHHHHHhcchhcC----------ccCcEEEECCCe
Confidence 89999999999988654321 234677776653
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-21 Score=179.69 Aligned_cols=233 Identities=15% Similarity=0.106 Sum_probs=157.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||.+++++|+++|++|+++++................. ....+.++++|++|.++++++++.+
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999988887654322222222111111 1236888999999999999888764
Q ss_pred ---CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEe-cCC-cccCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWA-SSS-SVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~-SS~-~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||.... ..+.++++..+++|+.++.++++++.+.- ..++++++ ||. +.+.
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~------------ 153 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT------------ 153 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC------------
Confidence 68999999997432 12334566889999999999999886542 12366665 442 3221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
.....|+.+|++.|.+++.+++++ |+++++++||.+.++...+.... ... ........ ........+
T Consensus 154 --~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~-~~~---~~~~~~~~----~~~~~~~~~ 223 (257)
T PRK12744 154 --PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGA-EAV---AYHKTAAA----LSPFSKTGL 223 (257)
T ss_pred --CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhcccccc-chh---hccccccc----ccccccCCC
Confidence 235789999999999999999885 69999999999987643211100 000 00000000 011112247
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+++|++.+++.++..... ..|+++++.++.
T Consensus 224 ~~~~dva~~~~~l~~~~~~-----------~~g~~~~~~gg~ 254 (257)
T PRK12744 224 TDIEDIVPFIRFLVTDGWW-----------ITGQTILINGGY 254 (257)
T ss_pred CCHHHHHHHHHHhhcccce-----------eecceEeecCCc
Confidence 8899999999999884221 223788887764
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-21 Score=180.14 Aligned_cols=227 Identities=14% Similarity=0.086 Sum_probs=158.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
..+|++|||||+|+||++++++|+++|++|+++++.... ......... .....+.++.+|++|.+++.++++++
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 83 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRD---EAEALAAEIRALGRRAVALQADLADEAEVRALVARASA 83 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999998763321 111111111 12346889999999999999888764
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... ...++++..+++|+.++.++++++.+.. ..+++|+++|...+..
T Consensus 84 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~----------- 152 (258)
T PRK09134 84 ALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNL----------- 152 (258)
T ss_pred HcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCC-----------
Confidence 579999999974331 2234556889999999999998876532 2348899888654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
......|+.+|.+.|.+++.+++++ ++++++++||.++.+... ....+.. ...... . + ...
T Consensus 153 -~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~---~~~~~~~-~~~~~~--~----~------~~~ 215 (258)
T PRK09134 153 -NPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ---SPEDFAR-QHAATP--L----G------RGS 215 (258)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc---ChHHHHH-HHhcCC--C----C------CCc
Confidence 1223589999999999999998875 489999999998765321 1111211 122111 1 1 136
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccH
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPV 366 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~ 366 (439)
+++|+|++++.+++.+. ..|+.|++.++..+++
T Consensus 216 ~~~d~a~~~~~~~~~~~------------~~g~~~~i~gg~~~~~ 248 (258)
T PRK09134 216 TPEEIAAAVRYLLDAPS------------VTGQMIAVDGGQHLAW 248 (258)
T ss_pred CHHHHHHHHHHHhcCCC------------cCCCEEEECCCeeccc
Confidence 68999999999997543 2348899888765444
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-21 Score=180.24 Aligned_cols=230 Identities=13% Similarity=0.072 Sum_probs=157.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|++|||||+|+||++++++|+++|++|++++|+.+. ......+. ....++.++.+|++|.++++++++.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEEN----LKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999994321 11111111 11346889999999999999888754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|++|||||..... .+.++++..+++|+.++..+.+++ ++.+. ++||++||...+.
T Consensus 82 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~-g~Ii~isS~~~~~----------- 149 (263)
T PRK08339 82 NIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGF-GRIIYSTSVAIKE----------- 149 (263)
T ss_pred hhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEcCccccC-----------
Confidence 579999999974322 234556788999999866655554 44442 4999999977532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC---------CChHHHHHHHHHcCCCCceeec
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP---------DMAYFFFTRDILNRKSIPIFES 310 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~---------~~~~~~~~~~~~~g~~~~~~~~ 310 (439)
+......|+.+|.+.+.+++.++.++ |+++++|.||.|..+.... ..........+.+ .++
T Consensus 150 -~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p---- 222 (263)
T PRK08339 150 -PIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAK--PIP---- 222 (263)
T ss_pred -CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhc--cCC----
Confidence 11234679999999999999999885 7999999999997652110 0000011111111 111
Q ss_pred CCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 311 PDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 311 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
...+...+|+|.+++.++...... ..|+++.+.++...+
T Consensus 223 ------~~r~~~p~dva~~v~fL~s~~~~~----------itG~~~~vdgG~~~~ 261 (263)
T PRK08339 223 ------LGRLGEPEEIGYLVAFLASDLGSY----------INGAMIPVDGGRLNS 261 (263)
T ss_pred ------cccCcCHHHHHHHHHHHhcchhcC----------ccCceEEECCCcccc
Confidence 123567899999999988654321 334788887665544
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-21 Score=178.91 Aligned_cols=220 Identities=12% Similarity=0.094 Sum_probs=155.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|++|||||+|+||++++++|+++|++|++++|+... ...+.++.+|++|+++++++++.+
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~--------------~~~~~~~~~D~~~~~~i~~~~~~~~~~ 69 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS--------------YNDVDYFKVDVSNKEQVIKGIDYVISK 69 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc--------------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999984321 126889999999999998888754
Q ss_pred --CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||...... ..++++..+++|+.|+.++++++.+ .+ .++||++||...+..
T Consensus 70 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~----------- 137 (258)
T PRK06398 70 YGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQD-KGVIINIASVQSFAV----------- 137 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeCcchhccC-----------
Confidence 6899999999743322 2334557799999999888887753 33 349999999765431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCC------ChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPD------MAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
..+...|+.+|.+.+.+++.++.++ ++++++|+||.|..+-.... ............ + ....
T Consensus 138 -~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~ 207 (258)
T PRK06398 138 -TRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIRE------W---GEMH 207 (258)
T ss_pred -CCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHh------h---hhcC
Confidence 1356789999999999999999885 49999999999876522100 000000000000 0 0001
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
....+...+|+|++++.++...... ..|+++.+.++.
T Consensus 208 ~~~~~~~p~eva~~~~~l~s~~~~~----------~~G~~i~~dgg~ 244 (258)
T PRK06398 208 PMKRVGKPEEVAYVVAFLASDLASF----------ITGECVTVDGGL 244 (258)
T ss_pred CcCCCcCHHHHHHHHHHHcCcccCC----------CCCcEEEECCcc
Confidence 1123567899999999988654321 234777776653
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-21 Score=179.06 Aligned_cols=226 Identities=13% Similarity=0.091 Sum_probs=157.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|++|||||+|+||.+++++|+++|++|++.+|+.+. ......+.. ....+.++.+|++|.+++.++++..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAER----AELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHH----HHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999984321 111111111 1235778899999999999888753
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.++.++++++.+ .+ .++||++||.....
T Consensus 83 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~----------- 150 (254)
T PRK08085 83 DIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQ-AGKIINICSMQSEL----------- 150 (254)
T ss_pred hcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEccchhcc-----------
Confidence 579999999974321 23345667899999998888887654 33 24999999965321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
...+...|+.+|.+.+.+++.++.++ |+++++|+||.+.++..........+...+.... + ...
T Consensus 151 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~--p----------~~~ 217 (254)
T PRK08085 151 -GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRT--P----------AAR 217 (254)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcC--C----------CCC
Confidence 11345789999999999999998874 8999999999998874321100011112222111 1 123
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|++.+++.++...... ..|++..+.++
T Consensus 218 ~~~~~~va~~~~~l~~~~~~~----------i~G~~i~~dgg 249 (254)
T PRK08085 218 WGDPQELIGAAVFLSSKASDF----------VNGHLLFVDGG 249 (254)
T ss_pred CcCHHHHHHHHHHHhCccccC----------CcCCEEEECCC
Confidence 677899999999888754422 23467766554
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=189.03 Aligned_cols=186 Identities=14% Similarity=0.058 Sum_probs=137.0
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.+++|+++||||+++||.+++++|+++|++|++++|+.++......... .......+.++.+|++|.++++++++.+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~-~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIR-TAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999995542222211111 1111246889999999999999988764
Q ss_pred ---CccEEEEcccccCcc---ccccChhHHHHHHHHHHHHHHHHHHh---cCCCCeEEEecCCccc-CCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR---YAMQNPNSYVHSNIAGLVSLLEVCKN---ANPQPAIVWASSSSVY-GLNTKVPFSEKDR 243 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~---~~~~~~~~~~~~Nv~gt~~ll~~~~~---~~~~~~~V~~SS~~v~-g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+..+.+.+.. .+ ..+||++||...+ +.....++.++..
T Consensus 90 ~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~-~~riv~vsS~~~~~~~~~~~~~~~~~~ 168 (313)
T PRK05854 90 EGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG-RARVTSQSSIAARRGAINWDDLNWERS 168 (313)
T ss_pred hCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC-CCCeEEEechhhcCCCcCccccccccc
Confidence 589999999986432 34567788999999997777666542 22 2399999996543 3222222333222
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH-----hCCcEEEEeeccccCC
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI-----YGLSLTGLRFFTVYGP 284 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~-----~gi~~~ilrpg~v~G~ 284 (439)
. .+...|+.||++.+.++++++++ .|+++++++||.|..+
T Consensus 169 ~-~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~ 213 (313)
T PRK05854 169 Y-AGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN 213 (313)
T ss_pred C-cchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence 2 45678999999999999999864 3799999999999765
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-21 Score=178.73 Aligned_cols=224 Identities=16% Similarity=0.089 Sum_probs=154.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh--cCCeEEEEcccCCHHHHHHhhccc---
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE--RSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++++|||||+|+||++++++|+++|++|++..+... ........... ...+.++.+|++|.+++.++++..
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNR----DAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRE 77 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCH----HHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999988765321 11111111111 235788999999999999988754
Q ss_pred --CccEEEEcccccCccc-----cccChhHHHHHHHHHHHHHHHHHHhcC------CCCeEEEecCCc-ccCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY-----AMQNPNSYVHSNIAGLVSLLEVCKNAN------PQPAIVWASSSS-VYGLNTKVPFS 239 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~~~~~~------~~~~~V~~SS~~-v~g~~~~~~~~ 239 (439)
++|+||||||...... ..+++...+++|+.++.++++++.+.. ..++||++||.. +++..
T Consensus 78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------ 151 (248)
T PRK06123 78 LGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP------ 151 (248)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC------
Confidence 5799999999754321 233456789999999999888875431 123799999964 34310
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.....|+.+|++.+.+++.+++++ |+++++||||.|+||...... ............+...
T Consensus 152 ------~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~-~~~~~~~~~~~~p~~~--------- 215 (248)
T PRK06123 152 ------GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG-EPGRVDRVKAGIPMGR--------- 215 (248)
T ss_pred ------CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC-CHHHHHHHHhcCCCCC---------
Confidence 112469999999999999998875 899999999999998532111 1122222222222211
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+.+++|++++++.++...... ..|++|++.++
T Consensus 216 ---~~~~~d~a~~~~~l~~~~~~~----------~~g~~~~~~gg 247 (248)
T PRK06123 216 ---GGTAEEVARAILWLLSDEASY----------TTGTFIDVSGG 247 (248)
T ss_pred ---CcCHHHHHHHHHHHhCccccC----------ccCCEEeecCC
Confidence 246899999999987654321 23478988764
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=174.96 Aligned_cols=225 Identities=15% Similarity=0.121 Sum_probs=160.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||.+++++|+++|++|++++|+.... ....... .....+.++.+|++|++++.+++++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAA----EALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVE 78 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHH----HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 5668999999999999999999999999999999954211 1111111 12346888999999999998888763
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
.+|+|||+||...... +.+++...++.|+.++.++++++. +.+. ++||++||.....
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~~ii~~ss~~~~~----------- 146 (246)
T PRK05653 79 AFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARY-GRIVNISSVSGVT----------- 146 (246)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEECcHHhcc-----------
Confidence 5799999998754321 223445789999999999988884 3443 4999999965421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
...+...|+.+|.+.+.+++.++++. +++++++|||.++++.... ............ + ....
T Consensus 147 -~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~--~~~~~~~~~~~~--~----------~~~~ 211 (246)
T PRK05653 147 -GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG--LPEEVKAEILKE--I----------PLGR 211 (246)
T ss_pred -CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh--hhHHHHHHHHhc--C----------CCCC
Confidence 11346789999999999999987763 8999999999999986531 111111111111 1 1144
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+++++|+++++..++...... ..+++|++++|.
T Consensus 212 ~~~~~dva~~~~~~~~~~~~~----------~~g~~~~~~gg~ 244 (246)
T PRK05653 212 LGQPEEVANAVAFLASDAASY----------ITGQVIPVNGGM 244 (246)
T ss_pred CcCHHHHHHHHHHHcCchhcC----------ccCCEEEeCCCe
Confidence 788999999999998654321 234899998865
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=189.93 Aligned_cols=185 Identities=19% Similarity=0.182 Sum_probs=134.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+|+||||+||||.+++++|+++|++|++++|+..... ....+. .....+.++.+|++|.++++++++..
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~----~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAE----AAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRA 79 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHH----HHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999432111 111111 11246889999999999999888763
Q ss_pred ---CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHh----cCC-CCeEEEecCCcccCCCC--CCCC
Q 013602 174 ---SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKN----ANP-QPAIVWASSSSVYGLNT--KVPF 238 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~-~~~~V~~SS~~v~g~~~--~~~~ 238 (439)
++|+||||||+... ..+.++++..+++|+.|+.++++++.. .+. ..|||++||...+.... ..+.
T Consensus 80 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~ 159 (322)
T PRK07453 80 LGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPI 159 (322)
T ss_pred hCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCC
Confidence 57999999997432 123455678999999998888877753 221 23999999976643110 0000
Q ss_pred ----CC-----------------CCCCCCCCChHHHHHHHHHHHHHHHHhHh----CCcEEEEeeccccCCC
Q 013602 239 ----SE-----------------KDRTDQPASLYAATKKAGEEIAHTYNHIY----GLSLTGLRFFTVYGPW 285 (439)
Q Consensus 239 ----~e-----------------~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~----gi~~~ilrpg~v~G~~ 285 (439)
+. +..+..|...|+.||++.+.+++++++++ |++++++|||.|++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 160 PAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred CCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 00 01122456889999999999999998875 7999999999998643
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=174.62 Aligned_cols=183 Identities=27% Similarity=0.368 Sum_probs=141.2
Q ss_pred EEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEEc
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHL 181 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~~ 181 (439)
|+|+||||++|+.++++|+++|++|++++|+.++ ... ..+++++.+|+.|.+++.++++++ |+|||+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~---------~~~--~~~~~~~~~d~~d~~~~~~al~~~--d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSK---------AED--SPGVEIIQGDLFDPDSVKAALKGA--DAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGG---------HHH--CTTEEEEESCTTCHHHHHHHHTTS--SEEEEC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchh---------ccc--ccccccceeeehhhhhhhhhhhhc--chhhhh
Confidence 7999999999999999999999999999994321 111 679999999999999999999988 999999
Q ss_pred ccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 013602 182 AAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEI 261 (439)
Q Consensus 182 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~ 261 (439)
++.... +...+.++++++++++.. ++|++||.++|+........+.. .....|...|..+|++
T Consensus 68 ~~~~~~-------------~~~~~~~~~~a~~~~~~~-~~v~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~e~~ 130 (183)
T PF13460_consen 68 AGPPPK-------------DVDAAKNIIEAAKKAGVK-RVVYLSSAGVYRDPPGLFSDEDK---PIFPEYARDKREAEEA 130 (183)
T ss_dssp CHSTTT-------------HHHHHHHHHHHHHHTTSS-EEEEEEETTGTTTCTSEEEGGTC---GGGHHHHHHHHHHHHH
T ss_pred hhhhcc-------------cccccccccccccccccc-cceeeeccccCCCCCcccccccc---cchhhhHHHHHHHHHH
Confidence 975321 266788999999999855 99999999998744332111111 1125788999999888
Q ss_pred HHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhh
Q 013602 262 AHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 262 ~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
+++ .+++++++||+.+||+.... ...+. ..+....++|+.+|+|++++.++++
T Consensus 131 ~~~----~~~~~~ivrp~~~~~~~~~~----------------~~~~~--~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 131 LRE----SGLNWTIVRPGWIYGNPSRS----------------YRLIK--EGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp HHH----STSEEEEEEESEEEBTTSSS----------------EEEES--STSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred HHh----cCCCEEEEECcEeEeCCCcc----------------eeEEe--ccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 853 49999999999999986431 11111 1234455899999999999999864
|
... |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=174.44 Aligned_cols=227 Identities=17% Similarity=0.135 Sum_probs=160.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+|+||||+|+||+++++.|+++|++|++++|+.+.. .....+. ....++.++.+|++|.++++++++.+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEA----RELAAALEAAGGRAHAIAADLADPASVQRFFDAAAA 80 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999998843211 1111111 11246889999999999999888763
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++.+..+++|+.++.++++++.+.. ..++||++||...+..
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 149 (250)
T PRK12939 81 ALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWG----------- 149 (250)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccC-----------
Confidence 579999999975432 1233445678999999999988875421 1239999999665321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
......|+.+|.+.+.+++.++.+ .++++++|+||.+.++....... ..+......+. ....+
T Consensus 150 -~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~------------~~~~~ 215 (250)
T PRK12939 150 -APKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA-DERHAYYLKGR------------ALERL 215 (250)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC-hHHHHHHHhcC------------CCCCC
Confidence 123568999999999999998876 38999999999998775321110 01222222221 12347
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
++++|++++++.++...... ..|+.+.+.++.
T Consensus 216 ~~~~dva~~~~~l~~~~~~~----------~~G~~i~~~gg~ 247 (250)
T PRK12939 216 QVPDDVAGAVLFLLSDAARF----------VTGQLLPVNGGF 247 (250)
T ss_pred CCHHHHHHHHHHHhCccccC----------ccCcEEEECCCc
Confidence 88999999999998754321 344888887764
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=177.05 Aligned_cols=228 Identities=16% Similarity=0.156 Sum_probs=157.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|++|||||+|+||++++++|+++|++|++++|+.+. .......... ...++.++.+|++|.++++++++.+
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~---~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 82 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDD---GLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA 82 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcch---HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999985431 1111111111 1236788999999999999888764
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... ...++++..+++|+.++..+++++. +.+ .++||++||.+.+...
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~--------- 152 (254)
T PRK06114 83 ELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENG-GGSIVNIASMSGIIVN--------- 152 (254)
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CcEEEEECchhhcCCC---------
Confidence 579999999975432 2344566889999999877777653 333 3499999996543211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
+..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++........ .....+.+.. +. .-
T Consensus 153 -~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~~-~~~~~~~~~~--p~----------~r 218 (254)
T PRK06114 153 -RGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEMV-HQTKLFEEQT--PM----------QR 218 (254)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccch-HHHHHHHhcC--CC----------CC
Confidence 10124689999999999999998864 89999999999988753211111 1111111111 11 12
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+..++|++.+++.++...... ..|+++.+.+|
T Consensus 219 ~~~~~dva~~~~~l~s~~~~~----------~tG~~i~~dgg 250 (254)
T PRK06114 219 MAKVDEMVGPAVFLLSDAASF----------CTGVDLLVDGG 250 (254)
T ss_pred CcCHHHHHHHHHHHcCccccC----------cCCceEEECcC
Confidence 456899999999988654321 34478877665
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=176.16 Aligned_cols=229 Identities=16% Similarity=0.140 Sum_probs=160.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|++|||||+|+||.+++++|+++|++|++++|+.+. ........ ....++.++.+|++|.++++++++..
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEE----LEEAAAHLEALGIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999994321 11111111 11246788999999999998777653
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.+.++..+++|+.++.++++++.+. +..++||++||...+.....
T Consensus 86 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~------- 158 (259)
T PRK08213 86 RFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP------- 158 (259)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc-------
Confidence 579999999974322 223345678899999999999987654 22349999999765432111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
...+...|+.+|++.|.+++.+++++ |+++++++||.+.++... ..+..+...+..+.++..
T Consensus 159 -~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~--~~~~~~~~~~~~~~~~~~------------ 223 (259)
T PRK08213 159 -EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTR--GTLERLGEDLLAHTPLGR------------ 223 (259)
T ss_pred -cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchh--hhhHHHHHHHHhcCCCCC------------
Confidence 01245789999999999999998874 799999999998766432 123334444444443333
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|++.++..++...... ..|+.+++.++
T Consensus 224 ~~~~~~va~~~~~l~~~~~~~----------~~G~~~~~~~~ 255 (259)
T PRK08213 224 LGDDEDLKGAALLLASDASKH----------ITGQILAVDGG 255 (259)
T ss_pred CcCHHHHHHHHHHHhCccccC----------ccCCEEEECCC
Confidence 334799999988887654432 34478887764
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=176.76 Aligned_cols=225 Identities=15% Similarity=0.164 Sum_probs=157.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||.+++++|+++|++|++++|+ .. ......... ....+.++.+|++|.+++.++++++
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TN----WDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cH----HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999984 11 111111111 1246889999999999999888765
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|++|||||..... ...++++..+++|+.++.++++++. +.+ .++||++||...+..
T Consensus 88 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~---------- 156 (258)
T PRK06935 88 EFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQG-SGKIINIASMLSFQG---------- 156 (258)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC-CeEEEEECCHHhccC----------
Confidence 579999999975321 1234556789999999877776664 333 249999999776431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
......|+.+|.+.+.+++.+++++ |+++++|+||.|..+..............+... ++ ...
T Consensus 157 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~--~~----------~~~ 222 (258)
T PRK06935 157 --GKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKR--IP----------AGR 222 (258)
T ss_pred --CCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhc--CC----------CCC
Confidence 1234689999999999999998874 799999999999876432110000111111111 11 123
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|++.+++.++...... ..|.++.+.++
T Consensus 223 ~~~~~dva~~~~~l~s~~~~~----------~~G~~i~~dgg 254 (258)
T PRK06935 223 WGEPDDLMGAAVFLASRASDY----------VNGHILAVDGG 254 (258)
T ss_pred CCCHHHHHHHHHHHcChhhcC----------CCCCEEEECCC
Confidence 677899999999988754422 33478877665
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=178.89 Aligned_cols=165 Identities=15% Similarity=0.111 Sum_probs=130.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
..+|.||||||.+++|..+|++|.++|++|++.|..++. .+...... +++...+++|++++++++++.+.+
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~g------ae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~ 100 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEG------AESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKK 100 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCch------HHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999953321 11222222 788999999999999999988755
Q ss_pred -----CccEEEEcccccCccc-----cccChhHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVRY-----AMQNPNSYVHSNIAG----LVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~g----t~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
..-.||||||+..+.. +.+++...+++|+.| |..++..++++.. |||++||.+- .
T Consensus 101 ~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arG--RvVnvsS~~G--R------- 169 (322)
T KOG1610|consen 101 HLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARG--RVVNVSSVLG--R------- 169 (322)
T ss_pred hcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccC--eEEEeccccc--C-------
Confidence 3556999999755422 345677899999999 5666666777764 9999999763 1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTV 281 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v 281 (439)
.+.+..++|+.||++.|.+...+++| +|+++.+|.||..
T Consensus 170 ---~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f 211 (322)
T KOG1610|consen 170 ---VALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFF 211 (322)
T ss_pred ---ccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCcc
Confidence 11134689999999999999999998 5999999999943
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=177.77 Aligned_cols=226 Identities=15% Similarity=0.163 Sum_probs=160.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh---hhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL---LERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+++||||+|+||+++++.|+++|++|++++|+.+. ......+. ....++.++.+|++|.+++.++++.+
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADA----LAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWV 82 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 578999999999999999999999999999999994321 11111111 11346888999999999988887754
Q ss_pred -----CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||.... ....++++..+++|+.++.++++++. +.+. ++||++||...+..
T Consensus 83 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~sS~~~~~~-------- 153 (257)
T PRK09242 83 EDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHAS-SAIVNIGSVSGLTH-------- 153 (257)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-ceEEEECccccCCC--------
Confidence 57999999997432 22345567889999999999988874 3332 49999999765432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|.+.+.+++.++.++ |++++.++||.|.++..........+........+...
T Consensus 154 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~---------- 219 (257)
T PRK09242 154 ----VRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPMRR---------- 219 (257)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCCCC----------
Confidence 1345789999999999999988764 89999999999988754321111222222232222212
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|++.++..++...... ..|+.+++.++
T Consensus 220 --~~~~~~va~~~~~l~~~~~~~----------~~g~~i~~~gg 251 (257)
T PRK09242 220 --VGEPEEVAAAVAFLCMPAASY----------ITGQCIAVDGG 251 (257)
T ss_pred --CcCHHHHHHHHHHHhCccccc----------ccCCEEEECCC
Confidence 345799999999988654321 23477777654
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=178.14 Aligned_cols=229 Identities=14% Similarity=0.096 Sum_probs=154.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|++|||||+|+||.++++.|+++|++|++++|+ + .......+.. ...++.++.+|++|.+++.++++.+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-E----AVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKE 78 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-H----HHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999994 2 1111111111 1235889999999999998888764
Q ss_pred ---CccEEEEcccccCc-c----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-R----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... . .+.+..+..+++|+.++..+++++ ++.+ .+||++||...+..
T Consensus 79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~--------- 147 (272)
T PRK08589 79 QFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG--GSIINTSSFSGQAA--------- 147 (272)
T ss_pred HcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEeCchhhcCC---------
Confidence 57999999997532 1 122345678899999977666664 3333 39999999765421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC--hHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM--AYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
......|+.+|++.+.+++.++.++ |+++++|+||.|..+...... .-..+......... .. ..
T Consensus 148 ---~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~ 216 (272)
T PRK08589 148 ---DLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQK-WM-------TP 216 (272)
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhh-cc-------CC
Confidence 1235789999999999999998875 799999999999876322000 00000000000000 00 00
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
...+..++|++++++.++...... ..|+.+.+.++.
T Consensus 217 ~~~~~~~~~va~~~~~l~s~~~~~----------~~G~~i~vdgg~ 252 (272)
T PRK08589 217 LGRLGKPEEVAKLVVFLASDDSSF----------ITGETIRIDGGV 252 (272)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcC----------cCCCEEEECCCc
Confidence 112567899999999988654422 234777776653
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=176.34 Aligned_cols=228 Identities=12% Similarity=0.091 Sum_probs=153.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+++||||+|+||.+++++|+++|++|++..+... ........+. .....+..+.+|++|.+++..++++.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK---EEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDN 78 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCH---HHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999998754211 1111111111 11235778899999998877655432
Q ss_pred ---------CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCC
Q 013602 174 ---------SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 ---------~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||...... +.++++..+++|+.++..+++++.+.. ...+||++||...+..
T Consensus 79 ~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~------- 151 (252)
T PRK12747 79 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRIS------- 151 (252)
T ss_pred HhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccC-------
Confidence 5799999999743221 223356788999999999988776432 1249999999875421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
......|+.+|++.+.+++.++.++ |+++++|.||.|.++....... .......... ...
T Consensus 152 -----~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~-~~~~~~~~~~-----------~~~ 214 (252)
T PRK12747 152 -----LPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLS-DPMMKQYATT-----------ISA 214 (252)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhccc-CHHHHHHHHh-----------cCc
Confidence 1235789999999999999998875 8999999999998874321000 0001111100 001
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
...+..++|+|.++..++...... ..|+.+.+.++
T Consensus 215 ~~~~~~~~dva~~~~~l~s~~~~~----------~~G~~i~vdgg 249 (252)
T PRK12747 215 FNRLGEVEDIADTAAFLASPDSRW----------VTGQLIDVSGG 249 (252)
T ss_pred ccCCCCHHHHHHHHHHHcCccccC----------cCCcEEEecCC
Confidence 123678999999999987643321 23477777655
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=170.47 Aligned_cols=303 Identities=18% Similarity=0.216 Sum_probs=226.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhC-CC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRR-GD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~-G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
-.+|||||+-|.+|..++..|..+ |. .|++-+..+. ... .-..--++..|+.|...+++++-..++|
T Consensus 44 ~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KP---------p~~--V~~~GPyIy~DILD~K~L~eIVVn~RId 112 (366)
T KOG2774|consen 44 APRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKP---------PAN--VTDVGPYIYLDILDQKSLEEIVVNKRID 112 (366)
T ss_pred CCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCC---------chh--hcccCCchhhhhhccccHHHhhcccccc
Confidence 358999999999999999999876 65 4555443111 111 1123457789999999999999999999
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC-CCCCCCCCCCCCCChHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTK-VPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~-~~~~e~~~~~~p~~~Y~~sK 255 (439)
-+||..+..+. .-+.+.....++|+.|..|+++.+++++. ++..-|+++.||.... .|.++-... .|...||.||
T Consensus 113 WL~HfSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL--~iFVPSTIGAFGPtSPRNPTPdltIQ-RPRTIYGVSK 188 (366)
T KOG2774|consen 113 WLVHFSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKL--KVFVPSTIGAFGPTSPRNPTPDLTIQ-RPRTIYGVSK 188 (366)
T ss_pred eeeeHHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCe--eEeecccccccCCCCCCCCCCCeeee-cCceeechhH
Confidence 99999886432 23566667889999999999999999996 8888899999996543 333332222 5789999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEeeccccC---CCCC-CCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHH
Q 013602 256 KAGEEIAHTYNHIYGLSLTGLRFFTVYG---PWGR-PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331 (439)
Q Consensus 256 ~a~E~~~~~~~~~~gi~~~ilrpg~v~G---~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 331 (439)
..+|.+-+.+.+++|+...++|...+.. |+++ .+.....|..+..+|+..... .++.....+|.+|+-++++
T Consensus 189 VHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCyl----rpdtrlpmmy~~dc~~~~~ 264 (366)
T KOG2774|consen 189 VHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYL----RPDTRLPMMYDTDCMASVI 264 (366)
T ss_pred HHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCccccc----CCCccCceeehHHHHHHHH
Confidence 9999999999999999999999766653 3333 334444555655566654332 5678889999999999999
Q ss_pred HHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCC--CCCCCcccCChHHHHHHcC
Q 013602 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR--NGDVPFTHANISLAQRELG 409 (439)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~--~~~~~~~~~d~~k~~~~LG 409 (439)
.++..+.+.- .-++||+++ -..|..|+++++.+.... ..+.+.+..+ ..+.....+|++.++++.-
T Consensus 265 ~~~~a~~~~l----------krr~ynvt~-~sftpee~~~~~~~~~p~-~~i~y~~~srq~iad~wp~~~dds~ar~~wh 332 (366)
T KOG2774|consen 265 QLLAADSQSL----------KRRTYNVTG-FSFTPEEIADAIRRVMPG-FEIDYDICTRQSIADSWPMSLDDSEARTEWH 332 (366)
T ss_pred HHHhCCHHHh----------hhheeeece-eccCHHHHHHHHHhhCCC-ceeecccchhhhhhhhcccccCchhHhhHHH
Confidence 9998877542 238999986 678999999999998752 2333333222 2344445689999999999
Q ss_pred CCccCcHHHHHHHHHHHHHHHcc
Q 013602 410 YKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 410 ~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
|+-++.+..-+.-++...+.|+.
T Consensus 333 ~~h~~~l~~~i~~~i~~~~~n~~ 355 (366)
T KOG2774|consen 333 EKHSLHLLSIISTVVAVHKSNLK 355 (366)
T ss_pred HhhhhhHHHHHHHHHHHHHhhhh
Confidence 99888888888888888888764
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=176.39 Aligned_cols=225 Identities=13% Similarity=0.058 Sum_probs=156.2
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+++||||+ ++||.+++++|+++|++|++.+|+. .... ..+......+.++++|++|.++++++++..
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-----~~~~-~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 78 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-----RMKK-SLQKLVDEEDLLVECDVASDESIERAFATIK 78 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-----HHHH-HHHhhccCceeEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999 7999999999999999999999841 1111 111222346889999999999998887664
Q ss_pred ----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|++|||||.... ..+.++++..+++|+.++..+.+++.+.- ...+||++||.+...
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~--------- 149 (252)
T PRK06079 79 ERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER--------- 149 (252)
T ss_pred HHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc---------
Confidence 58999999997532 12334566789999999888888775432 123899999865321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
.......|+.+|++.+.+++.++.++ |+++++|.||.|-.+-...............+. .+.
T Consensus 150 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~--~p~---------- 214 (252)
T PRK06079 150 ---AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSR--TVD---------- 214 (252)
T ss_pred ---cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhc--Ccc----------
Confidence 11235789999999999999998874 899999999999776321100011122222211 111
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+...+|+|.+++.++...... ..|+++.+.++
T Consensus 215 ~r~~~pedva~~~~~l~s~~~~~----------itG~~i~vdgg 248 (252)
T PRK06079 215 GVGVTIEEVGNTAAFLLSDLSTG----------VTGDIIYVDKG 248 (252)
T ss_pred cCCCCHHHHHHHHHHHhCccccc----------ccccEEEeCCc
Confidence 12567899999999998654322 23367766554
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=175.43 Aligned_cols=224 Identities=13% Similarity=0.105 Sum_probs=156.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
.++|++|||||+|+||+++++.|+++|++|++.++... ..... ..... ..++.++++|++|.+++.+++++.
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~---~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE---DAAEA-LADEL-GDRAIALQADVTDREQVQAMFATATEH 77 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH---HHHHH-HHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999998765321 11111 11111 246889999999999999888764
Q ss_pred ---CccEEEEcccccCc----------cccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV----------RYAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKV 236 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~----------~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~ 236 (439)
++|+||||||.... ..+.+++...+++|+.++.++++++.. .+ ..+||++||.....
T Consensus 78 ~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~iss~~~~~----- 151 (253)
T PRK08642 78 FGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQG-FGRIINIGTNLFQN----- 151 (253)
T ss_pred hCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC-CeEEEEECCccccC-----
Confidence 27999999986311 112234567899999999999998853 33 24999999864321
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCC
Q 013602 237 PFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 237 ~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
+..+...|+.+|.+.|.+++.+++++ |+++++|+||.+..+...... .......+.. .++.
T Consensus 152 -------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~-~~~~~~~~~~--~~~~------ 215 (253)
T PRK08642 152 -------PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAAT-PDEVFDLIAA--TTPL------ 215 (253)
T ss_pred -------CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccC-CHHHHHHHHh--cCCc------
Confidence 12356789999999999999998874 799999999999765321111 0111111111 1222
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+.+.+|++.+++.++...... ..|+.+.+.++
T Consensus 216 ----~~~~~~~~va~~~~~l~~~~~~~----------~~G~~~~vdgg 249 (253)
T PRK08642 216 ----RKVTTPQEFADAVLFFASPWARA----------VTGQNLVVDGG 249 (253)
T ss_pred ----CCCCCHHHHHHHHHHHcCchhcC----------ccCCEEEeCCC
Confidence 23788899999999998755432 34478877765
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=176.03 Aligned_cols=227 Identities=15% Similarity=0.113 Sum_probs=158.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.++++|+||||+|+||++++++|+++|++|+++.|+... .......+. ....++.++.+|++|.+++.++++++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAA---AADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHH---HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999988774321 111111111 12346889999999999999988864
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||..... ...++.+..+++|+.++.++++++.+.. ..++||++||...+. +.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------~~ 147 (245)
T PRK12937 80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL------------PL 147 (245)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC------------CC
Confidence 679999999975421 1233456789999999999998886542 123899999866532 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.+...|+.+|.+.+.+++.++.++ |+++++++||.+.++..... ........+....+.. -+.+
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~-~~~~~~~~~~~~~~~~------------~~~~ 214 (245)
T PRK12937 148 PGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG-KSAEQIDQLAGLAPLE------------RLGT 214 (245)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc-CCHHHHHHHHhcCCCC------------CCCC
Confidence 346789999999999999988764 79999999999876632101 1112223333222221 1456
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
++|++.+++.++...... ..|+++++.++
T Consensus 215 ~~d~a~~~~~l~~~~~~~----------~~g~~~~~~~g 243 (245)
T PRK12937 215 PEEIAAAVAFLAGPDGAW----------VNGQVLRVNGG 243 (245)
T ss_pred HHHHHHHHHHHcCccccC----------ccccEEEeCCC
Confidence 799999999988654421 23478888654
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=176.83 Aligned_cols=229 Identities=13% Similarity=0.106 Sum_probs=158.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh---hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+|+||||+|+||.+++++|+++|++|++++|+.+. ......+.. ....+.++.+|++|.+++.++++..
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAAL----AERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAA 80 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHH
Confidence 578999999999999999999999999999999994431 111111111 1345789999999999999888754
Q ss_pred -----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.++.++++++.. .+ .++||++||...+..
T Consensus 81 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~-------- 151 (260)
T PRK07063 81 EEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG-RGSIVNIASTHAFKI-------- 151 (260)
T ss_pred HHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC-CeEEEEECChhhccC--------
Confidence 679999999974321 23345678899999999888887643 33 249999999764321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCCCceeecCCC
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
......|+.+|++.+.+++.++.++ |+++++|+||.|-.+-.... .............. +.
T Consensus 152 ----~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~--~~------ 219 (260)
T PRK07063 152 ----IPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQ--PM------ 219 (260)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcC--CC------
Confidence 1345689999999999999998875 79999999999976532100 00000111111111 11
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
.-+...+|+|.+++.++...... ..|+.+.+.+|..+
T Consensus 220 ----~r~~~~~~va~~~~fl~s~~~~~----------itG~~i~vdgg~~~ 256 (260)
T PRK07063 220 ----KRIGRPEEVAMTAVFLASDEAPF----------INATCITIDGGRSV 256 (260)
T ss_pred ----CCCCCHHHHHHHHHHHcCccccc----------cCCcEEEECCCeee
Confidence 12456899999999998754432 34477877666443
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=177.97 Aligned_cols=226 Identities=16% Similarity=0.058 Sum_probs=155.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+++||||+|+||++++++|+++|++|++++|+.+. .... .... ..++.++.+|++|.+++.++++.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~-~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADN----GAAV-AASL-GERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHH-HHHh-CCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999994321 1111 1111 246889999999999999888765
Q ss_pred --CccEEEEcccccCc---cccccChhHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV---RYAMQNPNSYVHSNIAGLVSLLEVCKNA--NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~---~~~~~~~~~~~~~Nv~gt~~ll~~~~~~--~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~ 246 (439)
++|+||||||.... ....+++...+++|+.++.++++++... ....+||++||...+.. ..
T Consensus 78 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~------------~~ 145 (261)
T PRK08265 78 FGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFA------------QT 145 (261)
T ss_pred hCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccC------------CC
Confidence 68999999997432 2234456688999999998888876532 12249999999654211 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC-hHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 247 PASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM-AYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
....|+.+|.+.+.+++.++.++ |+++++|+||.+..+-..... ........+.. ... ....+..
T Consensus 146 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~-~~~----------p~~r~~~ 214 (261)
T PRK08265 146 GRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAA-PFH----------LLGRVGD 214 (261)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhc-ccC----------CCCCccC
Confidence 35689999999999999998874 899999999998765321000 00000000000 000 1112456
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.+|+|.+++.++...... ..|+.+.+.++
T Consensus 215 p~dva~~~~~l~s~~~~~----------~tG~~i~vdgg 243 (261)
T PRK08265 215 PEEVAQVVAFLCSDAASF----------VTGADYAVDGG 243 (261)
T ss_pred HHHHHHHHHHHcCccccC----------ccCcEEEECCC
Confidence 899999999998654321 33477877665
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=180.40 Aligned_cols=175 Identities=20% Similarity=0.196 Sum_probs=128.6
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.+.+|+|+||||+++||.++|.+|+++|.+++.+.|..+..+...++.++.... ..+.++++|++|.+++.+++++.
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~-~~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSL-EKVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCc-CccEEEeCccCCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999988888554333222222222212 25999999999999999888554
Q ss_pred ---CccEEEEcccccCcccc----ccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRYA----MQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
+.|++|||||+...... .++....+++|++|+..+.+++ ++.+ .++||++||++-+-
T Consensus 88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~----------- 155 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKM----------- 155 (282)
T ss_pred hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccccc-----------
Confidence 68999999998663222 2233468999999966666665 5555 34999999976431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEE-EEeeccccCC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLT-GLRFFTVYGP 284 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~-ilrpg~v~G~ 284 (439)
+.+....|++||+|.+.+...++.|+ +..+. +|.||.|-..
T Consensus 156 -~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~Te 200 (282)
T KOG1205|consen 156 -PLPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIETE 200 (282)
T ss_pred -CCCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceeec
Confidence 11223589999999999999999996 22222 5889988643
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=180.16 Aligned_cols=186 Identities=16% Similarity=0.055 Sum_probs=132.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+|+||||+||||++++++|+++|++|++++|+.+......... ........+.++.+|++|.++++++++++
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l-~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARI-TAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-HHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999999999543211111111 11111246889999999999999888754
Q ss_pred --CccEEEEcccccCcc--ccccChhHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCCccc--CCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR--YAMQNPNSYVHSNIAG----LVSLLEVCKNANPQPAIVWASSSSVY--GLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~--~~~~~~~~~~~~Nv~g----t~~ll~~~~~~~~~~~~V~~SS~~v~--g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++.+..+++|+.| +..+++.+++.+. ++||++||.+.+ +.........+.
T Consensus 93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~-~~iV~vSS~~~~~~~~~~~~~~~~~~- 170 (306)
T PRK06197 93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPG-SRVVTVSSGGHRIRAAIHFDDLQWER- 170 (306)
T ss_pred CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCC-CEEEEECCHHHhccCCCCccccCccc-
Confidence 589999999975432 2345667889999999 5666666666553 499999997643 221111111111
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEE--EeeccccCCC
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTG--LRFFTVYGPW 285 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~i--lrpg~v~G~~ 285 (439)
...+...|+.||++.+.+++++++++ |+++++ ++||.|..+-
T Consensus 171 ~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 171 RYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 12356789999999999999998875 666554 4799998764
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=176.74 Aligned_cols=227 Identities=17% Similarity=0.111 Sum_probs=157.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
++++++|||||+|+||++++++|+++|++|++++|+.+.. +...+. ....++.++.+|++|.+++.++++++
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-----EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVA 79 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-----HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999854321 111111 12346889999999999998888764
Q ss_pred ---CccEEEEcccccCcc---ccccChhHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR---YAMQNPNSYVHSNIAGLVSLLEVCKNAN--PQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~---~~~~~~~~~~~~Nv~gt~~ll~~~~~~~--~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||..... ...++++..+++|+.++.++.+.+.+.- ..++||++||...+.. .
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~ 147 (258)
T PRK08628 80 KFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTG------------Q 147 (258)
T ss_pred hcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccC------------C
Confidence 579999999964321 1224456789999999988888775321 1248999999655321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCC----hHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDM----AYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
.+...|+.+|++.+.+++.++.+ .+++++.|+||.|+++...... ........+... .+. + .
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~------~---~ 216 (258)
T PRK08628 148 GGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAK--IPL------G---H 216 (258)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhc--CCc------c---c
Confidence 34678999999999999999876 4899999999999997422100 000011111111 111 0 1
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.++.++|+|++++.++...... ..|+.+.+.++
T Consensus 217 ~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~gg 249 (258)
T PRK08628 217 RMTTAEEIADTAVFLLSERSSH----------TTGQWLFVDGG 249 (258)
T ss_pred cCCCHHHHHHHHHHHhChhhcc----------ccCceEEecCC
Confidence 3677899999999998765322 23367777554
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=174.57 Aligned_cols=226 Identities=14% Similarity=0.113 Sum_probs=157.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||+++++.|+++|++|+++.|+.... ........ .....+.++.+|++|.+++.+++++.
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAG---AEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhH---HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999998888744311 11111111 12346888999999999998888754
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCC-cccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSS-SVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~-~v~g~~~~~~~~e~~ 242 (439)
++|+|||+||...... ..+.++..+++|+.++.++++++.... ..++||++||. ++++.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~---------- 149 (248)
T PRK05557 80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGN---------- 149 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCC----------
Confidence 5799999999754321 223455788999999999988886431 12389999995 44431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
.....|+.+|.+.+.+++.++++ .++++++++||.+.++...+. ...+........+ ...
T Consensus 150 ---~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~--~~~~~~~~~~~~~------------~~~ 212 (248)
T PRK05557 150 ---PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDAL--PEDVKEAILAQIP------------LGR 212 (248)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccccc--ChHHHHHHHhcCC------------CCC
Confidence 23578999999999999888765 389999999999876543211 1122222222221 123
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+.+++|++.++..++..... ...|+.|++.++.
T Consensus 213 ~~~~~~va~~~~~l~~~~~~----------~~~g~~~~i~~~~ 245 (248)
T PRK05557 213 LGQPEEIASAVAFLASDEAA----------YITGQTLHVNGGM 245 (248)
T ss_pred CcCHHHHHHHHHHHcCcccC----------CccccEEEecCCc
Confidence 57889999999888765321 1345899997653
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=174.93 Aligned_cols=223 Identities=12% Similarity=0.116 Sum_probs=157.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.++++|||||+|+||.++++.|+++|++|++++|+.... .....+. .....+.++++|++|.++++++++..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKL----EEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAE 78 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999843211 1111111 11346788999999999988887764
Q ss_pred ---CccEEEEcccccCc-------------cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCC
Q 013602 174 ---SFTHVMHLAAQAGV-------------RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLN 233 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-------------~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~ 233 (439)
++|+||||||.... ..+.++....+++|+.++..+.+.+. +.....+||++||...|+.
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~- 157 (253)
T PRK08217 79 DFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN- 157 (253)
T ss_pred HcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC-
Confidence 57999999996331 11223445688999999887765543 3222238999999877652
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeec
Q 013602 234 TKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFES 310 (439)
Q Consensus 234 ~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~ 310 (439)
.+...|+.+|.+.+.+++.++++ .|+++++++||.+.++.... ..+.+...+....+.
T Consensus 158 ------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~--~~~~~~~~~~~~~~~----- 218 (253)
T PRK08217 158 ------------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAA--MKPEALERLEKMIPV----- 218 (253)
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccc--cCHHHHHHHHhcCCc-----
Confidence 24578999999999999999876 48999999999998875432 112222222222221
Q ss_pred CCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 311 PDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 311 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+.+++|++.++..++.... ..|++|++.++-
T Consensus 219 -------~~~~~~~~~a~~~~~l~~~~~------------~~g~~~~~~gg~ 251 (253)
T PRK08217 219 -------GRLGEPEEIAHTVRFIIENDY------------VTGRVLEIDGGL 251 (253)
T ss_pred -------CCCcCHHHHHHHHHHHHcCCC------------cCCcEEEeCCCc
Confidence 235678999999999985322 234899988754
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-20 Score=172.71 Aligned_cols=224 Identities=14% Similarity=0.090 Sum_probs=157.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
|+|+||||+|+||.++++.|+++|++|++++|+.. .......... .....+.++.+|++|.+++.++++.+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 79 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGN---DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG 79 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH---HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999999542 1111111111 12346889999999999998888764
Q ss_pred CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||.... ....++++..+++|+.++.++.++ +++.+. ++||++||...++. .
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss~~~~~~------------~ 146 (245)
T PRK12824 80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGY-GRIINISSVNGLKG------------Q 146 (245)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-eEEEEECChhhccC------------C
Confidence 57999999997532 123445567899999998887554 455443 49999999765532 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.....|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... ......+....+. ..+..
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~--~~~~~~~~~~~~~------------~~~~~ 212 (245)
T PRK12824 147 FGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMG--PEVLQSIVNQIPM------------KRLGT 212 (245)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC--HHHHHHHHhcCCC------------CCCCC
Confidence 24568999999999999998775 3899999999999887433111 1122222222211 22456
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.+|+++++..++...... ..|+.+++.++..
T Consensus 213 ~~~va~~~~~l~~~~~~~----------~~G~~~~~~~g~~ 243 (245)
T PRK12824 213 PEEIAAAVAFLVSEAAGF----------ITGETISINGGLY 243 (245)
T ss_pred HHHHHHHHHHHcCccccC----------ccCcEEEECCCee
Confidence 799999998887543321 3458999988754
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-20 Score=174.05 Aligned_cols=213 Identities=12% Similarity=0.119 Sum_probs=150.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|++|||||+|+||++++++|+++|++|+++++... ..... .... ....+.++++|++|.+++.++++++
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~---~~~~~-~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP---TETIE-QVTA-LGRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch---HHHHH-HHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998876321 11111 1111 1246788999999999999888764
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.++.++++++.. .+..++||++||...+...
T Consensus 83 ~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 152 (253)
T PRK08993 83 FGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG---------- 152 (253)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC----------
Confidence 689999999975322 23355678999999999888887643 2222489999998765321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
.....|+.+|++.+.+++.++.+ .|++++.|+||.+..+..............+.+ .++. .-+
T Consensus 153 --~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~--~~p~----------~r~ 218 (253)
T PRK08993 153 --IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILD--RIPA----------GRW 218 (253)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHh--cCCC----------CCC
Confidence 23468999999999999999887 489999999999987632100000011111111 1111 125
Q ss_pred eeHHHHHHHHHHHHhhch
Q 013602 321 TYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~ 338 (439)
...+|+|.+++.++....
T Consensus 219 ~~p~eva~~~~~l~s~~~ 236 (253)
T PRK08993 219 GLPSDLMGPVVFLASSAS 236 (253)
T ss_pred cCHHHHHHHHHHHhCccc
Confidence 668999999999987554
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=175.47 Aligned_cols=226 Identities=15% Similarity=0.105 Sum_probs=158.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+|+||||+|+||++++++|+++|++|++++|+.+. ......+. ....++.++.+|++|.+++.++++++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAAT----LEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHH----HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 11111111 11245889999999999998888754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.++.++.+.+.+ .+. ++||++||...+..
T Consensus 85 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~ss~~~~~~---------- 153 (256)
T PRK06124 85 EHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGY-GRIIAITSIAGQVA---------- 153 (256)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEeechhccC----------
Confidence 579999999975432 22345567899999998888866643 443 49999999664321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
......|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+...+... .+. ..
T Consensus 154 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~--~~~----------~~ 219 (256)
T PRK06124 154 --RAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQR--TPL----------GR 219 (256)
T ss_pred --CCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhc--CCC----------CC
Confidence 1235789999999999999988774 899999999999988532111001111111111 111 13
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+++++|++.+++.++...... ..|+.+.+.++
T Consensus 220 ~~~~~~~a~~~~~l~~~~~~~----------~~G~~i~~dgg 251 (256)
T PRK06124 220 WGRPEEIAGAAVFLASPAASY----------VNGHVLAVDGG 251 (256)
T ss_pred CCCHHHHHHHHHHHcCcccCC----------cCCCEEEECCC
Confidence 788999999999998765432 22366666554
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-20 Score=174.20 Aligned_cols=227 Identities=12% Similarity=0.046 Sum_probs=156.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++++||||||+|+||.+++++|+++|++|++++|+.+. ........ ....++.++.+|++|.+++.++++.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQ----LDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999994321 11111111 11246888999999999998888764
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.+++...+++|+.++.++.+++.+. ...++||++||.....
T Consensus 84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~----------- 152 (263)
T PRK07814 84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL----------- 152 (263)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC-----------
Confidence 679999999964332 223456788999999999999998641 2234899999954321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
...+...|+.+|.+.+.+++.++.++ ++++++|+||.+..+.......-..+...+....+ . ...
T Consensus 153 -~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--~----------~~~ 219 (263)
T PRK07814 153 -AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPMEKATP--L----------RRL 219 (263)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcCC--C----------CCC
Confidence 11356789999999999999998875 58999999999876532100000111111111111 1 124
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
...+|+|++++.++...... ..|+.+.+.++
T Consensus 220 ~~~~~va~~~~~l~~~~~~~----------~~g~~~~~~~~ 250 (263)
T PRK07814 220 GDPEDIAAAAVYLASPAGSY----------LTGKTLEVDGG 250 (263)
T ss_pred cCHHHHHHHHHHHcCccccC----------cCCCEEEECCC
Confidence 57899999999988654321 23467777654
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-20 Score=172.76 Aligned_cols=226 Identities=16% Similarity=0.147 Sum_probs=155.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||.+++++|+++|++|++++|+... ......+... ...+.++++|++|.++++++++.+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDG----CQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999984321 1111111111 235778999999999998887764
Q ss_pred ---CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ....++.+..+++|+.++.++++++ ++.+ .++||++||...+.
T Consensus 82 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~---------- 150 (252)
T PRK07035 82 RHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQG-GGSIVNVASVNGVS---------- 150 (252)
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CcEEEEECchhhcC----------
Confidence 57999999986321 1223445678999999988877766 3333 34999999865422
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
+..+...|+.+|++.+.+++.+++++ |+++++|+||.|..+.......-..+........+ . .
T Consensus 151 --~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~--~----------~ 216 (252)
T PRK07035 151 --PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIP--L----------R 216 (252)
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccCC--C----------C
Confidence 11346789999999999999998874 89999999999976532211000011111111111 1 1
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.+...+|+|++++.++...... ..|+++.+.++
T Consensus 217 ~~~~~~~va~~~~~l~~~~~~~----------~~g~~~~~dgg 249 (252)
T PRK07035 217 RHAEPSEMAGAVLYLASDASSY----------TTGECLNVDGG 249 (252)
T ss_pred CcCCHHHHHHHHHHHhCccccC----------ccCCEEEeCCC
Confidence 2456899999999988765432 23477777554
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=175.60 Aligned_cols=225 Identities=11% Similarity=0.113 Sum_probs=155.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
+|+++||||+|+||.++++.|+++|++|++++|+... ......... ....+.++++|++|+++++++++.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEK----LEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKF 76 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999995321 111111111 1246889999999999999888764
Q ss_pred -CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||.... ..+.++++..+++|+.++.++++++.+ .+...+||++||...+. +
T Consensus 77 ~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~ 144 (252)
T PRK07677 77 GRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD------------A 144 (252)
T ss_pred CCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc------------C
Confidence 67999999986432 122344567899999999999998843 22234899999875432 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh----CCcEEEEeeccccCCCCCCCC-hHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY----GLSLTGLRFFTVYGPWGRPDM-AYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~----gi~~~ilrpg~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
......|+.+|.+.+.+++.++.++ |+++++|+||.+.++...... .-......+.+..+. ..
T Consensus 145 ~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 212 (252)
T PRK07677 145 GPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVPL------------GR 212 (252)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCCC------------CC
Confidence 1234679999999999999987773 899999999999854321100 001222222222211 12
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|++.++..++...... ..|+.+.+.++
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~----------~~g~~~~~~gg 244 (252)
T PRK07677 213 LGTPEEIAGLAYFLLSDEAAY----------INGTCITMDGG 244 (252)
T ss_pred CCCHHHHHHHHHHHcCccccc----------cCCCEEEECCC
Confidence 566799999998887654321 33477777665
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=174.96 Aligned_cols=225 Identities=12% Similarity=0.028 Sum_probs=156.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
+|+||||||+|+||.+++++|+++|++|+++.+.... .......+. .....+.++.+|++|.++++++++..
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEE---GAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChH---HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5799999999999999999999999999998763221 111111111 12346889999999999988888754
Q ss_pred -CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... ...++++..+++|+.++.++++++... +..++||++||..... +
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~------------~ 146 (256)
T PRK12743 79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT------------P 146 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC------------C
Confidence 579999999975432 123455678999999999999877542 2224899999965321 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
..+...|+.+|.+.+.+++.++.++ |++++.|+||.++++...... .........+. +. ..+.
T Consensus 147 ~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~--~~~~~~~~~~~--~~----------~~~~ 212 (256)
T PRK12743 147 LPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD--SDVKPDSRPGI--PL----------GRPG 212 (256)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC--hHHHHHHHhcC--CC----------CCCC
Confidence 2456799999999999999988864 899999999999987532111 11111111111 11 0135
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+.+|++.+++.++...... ..|.++.+.++.
T Consensus 213 ~~~dva~~~~~l~~~~~~~----------~~G~~~~~dgg~ 243 (256)
T PRK12743 213 DTHEIASLVAWLCSEGASY----------TTGQSLIVDGGF 243 (256)
T ss_pred CHHHHHHHHHHHhCccccC----------cCCcEEEECCCc
Confidence 7899999999887654321 334788877664
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-20 Score=171.58 Aligned_cols=222 Identities=13% Similarity=0.061 Sum_probs=154.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
+++|+||||||+|+||++++++|+++|++|++.++... . ...+.....++.++.+|++|.+++.++++.. ++
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~----~---~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSK----D---AAERLAQETGATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCH----H---HHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCC
Confidence 67899999999999999999999999999998876221 1 1111112225678899999999998888764 47
Q ss_pred cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCCh
Q 013602 176 THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA-NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 250 (439)
Q Consensus 176 d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~ 250 (439)
|+||||||..... ...++++..+++|+.++.+++..+.+. ...++||++||..... .+..+...
T Consensus 77 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~~ 145 (237)
T PRK12742 77 DILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR-----------MPVAGMAA 145 (237)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc-----------CCCCCCcc
Confidence 9999999975332 223456789999999998887666543 2234999999965311 01135678
Q ss_pred HHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHH
Q 013602 251 YAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327 (439)
Q Consensus 251 Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva 327 (439)
|+.+|++.+.+++.++.++ |+++++|+||.+..+....... ....+... .+. ..+...+|++
T Consensus 146 Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~---~~~~~~~~--~~~----------~~~~~p~~~a 210 (237)
T PRK12742 146 YAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGP---MKDMMHSF--MAI----------KRHGRPEEVA 210 (237)
T ss_pred hHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccH---HHHHHHhc--CCC----------CCCCCHHHHH
Confidence 9999999999999988864 7999999999998764321111 11111111 111 1246789999
Q ss_pred HHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 328 KGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 328 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.++..++...... ..|..+.+.++
T Consensus 211 ~~~~~l~s~~~~~----------~~G~~~~~dgg 234 (237)
T PRK12742 211 GMVAWLAGPEASF----------VTGAMHTIDGA 234 (237)
T ss_pred HHHHHHcCcccCc----------ccCCEEEeCCC
Confidence 9999988654431 23467777554
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-20 Score=173.40 Aligned_cols=227 Identities=15% Similarity=0.105 Sum_probs=157.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|++|||||+|+||.+++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.+++++++++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDA----LEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHH----HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999984321 111111111 1246788999999999999888754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++.+..+++|+.++..+++++.. .+...+||++||....-.
T Consensus 83 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~---------- 152 (253)
T PRK05867 83 ELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHII---------- 152 (253)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCC----------
Confidence 689999999975432 12344567889999998888887743 222238999998653110
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
........|+.+|.+.+.+++.+++++ |+++++|+||.|-.+..... ........... +. ..
T Consensus 153 ~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~---~~~~~~~~~~~--~~----------~r 217 (253)
T PRK05867 153 NVPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY---TEYQPLWEPKI--PL----------GR 217 (253)
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccc---hHHHHHHHhcC--CC----------CC
Confidence 000124689999999999999998874 89999999999987643211 11111122211 11 12
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+...+|+|.+++.++...... ..|+++.+.+|.
T Consensus 218 ~~~p~~va~~~~~L~s~~~~~----------~tG~~i~vdgG~ 250 (253)
T PRK05867 218 LGRPEELAGLYLYLASEASSY----------MTGSDIVIDGGY 250 (253)
T ss_pred CcCHHHHHHHHHHHcCcccCC----------cCCCeEEECCCc
Confidence 567899999999998654321 344788777653
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-20 Score=171.41 Aligned_cols=215 Identities=15% Similarity=0.120 Sum_probs=152.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
.+|+|+||||+|+||.+++++|+++|++|++++|+... .....++.+|++|.+++.++++.+
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~--------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 67 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID--------------DFPGELFACDLADIEQTAATLAQINEIH 67 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc--------------ccCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999995432 012257899999999888877643
Q ss_pred CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||...... ..+++...+++|+.++.++.+++ ++.+. ++||++||...|+.
T Consensus 68 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~------------- 133 (234)
T PRK07577 68 PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQ-GRIVNICSRAIFGA------------- 133 (234)
T ss_pred CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEccccccCC-------------
Confidence 6799999999754322 23445678999999977776665 44553 49999999876642
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCCh-HHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMA-YFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
.....|+.+|.+.+.+++.++.++ |+++++|+||.+.++....... .......++...+ . ..+.
T Consensus 134 ~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~ 201 (234)
T PRK07577 134 LDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIP--M----------RRLG 201 (234)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcCC--C----------CCCc
Confidence 235789999999999999887763 8999999999998764321100 0011111122111 1 1134
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+|+|.+++.++..+... ..|+.+.+.++.
T Consensus 202 ~~~~~a~~~~~l~~~~~~~----------~~g~~~~~~g~~ 232 (234)
T PRK07577 202 TPEEVAAAIAFLLSDDAGF----------ITGQVLGVDGGG 232 (234)
T ss_pred CHHHHHHHHHHHhCcccCC----------ccceEEEecCCc
Confidence 6799999999998765321 234788886653
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=174.44 Aligned_cols=232 Identities=15% Similarity=0.089 Sum_probs=153.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
+|++|||||+|+||.++++.|+++|++|++++|+.+.. .....+.. ...++.++.+|++|+++++++++..
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETA----QAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTF 77 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999843211 11111111 1246788999999999998888764
Q ss_pred -CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||...... ..++.+..+++|+.++..+++++.+ .+...+||++||...+..
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------ 145 (256)
T PRK08643 78 GDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVG------------ 145 (256)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccC------------
Confidence 5799999999743221 2334567899999998777776643 232348999999654211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHH--cCCCCce-eecCCCCccee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL--NRKSIPI-FESPDHGTVAR 318 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~--~g~~~~~-~~~~~~~~~~~ 318 (439)
......|+.+|.+.+.+++.++.++ |+++++|+||.|.+|... .+....- .+.+... ....-......
T Consensus 146 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (256)
T PRK08643 146 NPELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMF------DIAHQVGENAGKPDEWGMEQFAKDITLG 219 (256)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhh------HHHhhhccccCCCchHHHHHHhccCCCC
Confidence 1235789999999999999988763 899999999999876321 0000000 0000000 00000000111
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+...+|+|.++..++...... ..|+++.+.++.
T Consensus 220 ~~~~~~~va~~~~~L~~~~~~~----------~~G~~i~vdgg~ 253 (256)
T PRK08643 220 RLSEPEDVANCVSFLAGPDSDY----------ITGQTIIVDGGM 253 (256)
T ss_pred CCcCHHHHHHHHHHHhCccccC----------ccCcEEEeCCCe
Confidence 2567899999999988654432 344788776653
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=170.69 Aligned_cols=205 Identities=16% Similarity=0.131 Sum_probs=152.2
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
...|+.||||||.+++|+.++.+++++|.++++.|.+.....+..+..++. +.++.+.+|++|.+.+.+..+++
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~----g~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI----GEAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc----CceeEEEecCCCHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999998765443333322222 37999999999999998888766
Q ss_pred ---CccEEEEcccccCcccc----ccChhHHHHHHHHHHH----HHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRYA----MQNPNSYVHSNIAGLV----SLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~----~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
.+|++|||||++..... ++..+.++++|+.|.. .++....+.. .++||.++|+.-+-
T Consensus 111 e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~IaS~aG~~----------- 178 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIASVAGLF----------- 178 (300)
T ss_pred hcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEehhhhccc-----------
Confidence 57999999999765432 3334578999999954 4555555544 33999999955321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh------CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY------GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~------gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.......|+.||+++..+.+++..|. |++++.+.|+.+-.. +.++ ..+. ..
T Consensus 179 -g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tg--------------mf~~-~~~~-------~~ 235 (300)
T KOG1201|consen 179 -GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTG--------------MFDG-ATPF-------PT 235 (300)
T ss_pred -CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecccc--------------ccCC-CCCC-------cc
Confidence 11346899999999999999998773 799999999987522 1122 1111 12
Q ss_pred eeeeeeHHHHHHHHHHHHhhchh
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
....+..+.+|+.++.++.....
T Consensus 236 l~P~L~p~~va~~Iv~ai~~n~~ 258 (300)
T KOG1201|consen 236 LAPLLEPEYVAKRIVEAILTNQA 258 (300)
T ss_pred ccCCCCHHHHHHHHHHHHHcCCc
Confidence 34578889999999999876653
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=177.44 Aligned_cols=210 Identities=17% Similarity=0.121 Sum_probs=150.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
+++||||||+|+||.++++.|+++|++|++++|+.... ....... ....++.++.+|++|.+++.++++.+
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~----~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 76 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRL----ASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARF 76 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999843211 1111111 11246888999999999999888765
Q ss_pred -CccEEEEcccccCcccc-----ccChhHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVRYA-----MQNPNSYVHSNIAGLVSLLEVCKNA--NPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~~-----~~~~~~~~~~Nv~gt~~ll~~~~~~--~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||....... .+.+...+++|+.++.++++.+... ...++||++||...+.. .
T Consensus 77 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~------------~ 144 (263)
T PRK06181 77 GGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTG------------V 144 (263)
T ss_pred CCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCC------------C
Confidence 67999999997543222 2224567999999999999988532 11248999999776531 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.+...|+.+|.+.+.+++.++.+ .++++++++||.+..+.... .......+... .+.....+++
T Consensus 145 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~----------~~~~~~~~~~~---~~~~~~~~~~ 211 (263)
T PRK06181 145 PTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKR----------ALDGDGKPLGK---SPMQESKIMS 211 (263)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchh----------hcccccccccc---ccccccCCCC
Confidence 34578999999999999888765 38999999999998763320 11111111110 1122237899
Q ss_pred HHHHHHHHHHHHhhc
Q 013602 323 IDDIVKGCLAALDTA 337 (439)
Q Consensus 323 v~Dva~a~~~~l~~~ 337 (439)
++|+|++++.++...
T Consensus 212 ~~dva~~i~~~~~~~ 226 (263)
T PRK06181 212 AEECAEAILPAIARR 226 (263)
T ss_pred HHHHHHHHHHHhhCC
Confidence 999999999999753
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=176.90 Aligned_cols=226 Identities=15% Similarity=0.127 Sum_probs=156.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+++||||+|+||++++++|+++|++|++++|+.+. ......+.. ...++.++++|++|.+++.++++..
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEK----AEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILE 83 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999994321 111111111 1235788999999999988887753
Q ss_pred ---CccEEEEcccccCcc-------------------ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCC
Q 013602 174 ---SFTHVMHLAAQAGVR-------------------YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSS 227 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~-------------------~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~ 227 (439)
++|+||||||..... ...+++...+++|+.++..+++++ ++.+ .++||++||.
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS~ 162 (278)
T PRK08277 84 DFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRK-GGNIINISSM 162 (278)
T ss_pred HcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEccc
Confidence 679999999964321 113445678999999987666554 3343 2499999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC-----ChHHHHHHHH
Q 013602 228 SVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD-----MAYFFFTRDI 299 (439)
Q Consensus 228 ~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~-----~~~~~~~~~~ 299 (439)
..+.. ..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .........+
T Consensus 163 ~~~~~------------~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~ 230 (278)
T PRK08277 163 NAFTP------------LTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKI 230 (278)
T ss_pred hhcCC------------CCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHH
Confidence 76531 1345789999999999999998885 79999999999998743210 0000111111
Q ss_pred HcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhh-chhccCCCCCccCCCCCcEEEecCC
Q 013602 300 LNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT-AEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 300 ~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
....+ ..-+...+|+|.+++.++.. .... ..|+.+.+.+|
T Consensus 231 ~~~~p------------~~r~~~~~dva~~~~~l~s~~~~~~----------~tG~~i~vdgG 271 (278)
T PRK08277 231 LAHTP------------MGRFGKPEELLGTLLWLADEKASSF----------VTGVVLPVDGG 271 (278)
T ss_pred hccCC------------ccCCCCHHHHHHHHHHHcCccccCC----------cCCCEEEECCC
Confidence 11111 12356689999999998775 3321 23477777655
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=180.39 Aligned_cols=165 Identities=19% Similarity=0.137 Sum_probs=128.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
.+|+|+||||+|+||.+++++|+++|++|++++|+.+ ..+.....++.++.+|++|.++++++++.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~---------~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 73 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEE---------DVAALEAEGLEAFQLDYAEPESIAALVAQVLELS 73 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH---------HHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 3579999999999999999999999999999999432 111222346889999999999988888754
Q ss_pred --CccEEEEcccccCccc----cccChhHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAG----LVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~g----t~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||...... +.++.+..+++|+.| +.++++.+++.+.. +||++||...+.
T Consensus 74 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g-~iv~isS~~~~~------------ 140 (277)
T PRK05993 74 GGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQG-RIVQCSSILGLV------------ 140 (277)
T ss_pred CCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCC-EEEEECChhhcC------------
Confidence 5799999999754322 223345789999999 56666777766643 999999965432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCC
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGP 284 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~ 284 (439)
+..+...|+.+|++.+.+++.++.+ .|+++++|+||.|..+
T Consensus 141 ~~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 141 PMKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 1134678999999999999998765 4899999999999766
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=174.24 Aligned_cols=227 Identities=14% Similarity=0.100 Sum_probs=154.4
Q ss_pred CCCCEEEEECCCC--hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAG--FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|++|||||++ +||++++++|+++|++|++.+|+... ... ..+... .....++++|++|.++++++++.+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~----~~~-~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~ 79 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL----GKR-VKPLAESLGSDFVLPCDVEDIASVDAVFEAL 79 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH----HHH-HHHHHHhcCCceEEeCCCCCHHHHHHHHHHH
Confidence 5789999999997 99999999999999999999884211 111 111111 123457899999999999888764
Q ss_pred -----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|++|||||.... ..+.++++..+++|+.++.++++++...-. .++||++||.+...
T Consensus 80 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~-------- 151 (271)
T PRK06505 80 EKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR-------- 151 (271)
T ss_pred HHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc--------
Confidence 68999999997431 123455678899999998888877653211 23899999965321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.......|+.+|++.+.+++.++.++ |+++++|.||.|..+................. ..+.
T Consensus 152 ----~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~--~~p~--------- 216 (271)
T PRK06505 152 ----VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQR--NSPL--------- 216 (271)
T ss_pred ----cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhh--cCCc---------
Confidence 11235689999999999999999885 89999999999977632110000001111111 1111
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.-+...+|+|.+++.++...... ..|+.+.+.++.
T Consensus 217 -~r~~~peeva~~~~fL~s~~~~~----------itG~~i~vdgG~ 251 (271)
T PRK06505 217 -RRTVTIDEVGGSALYLLSDLSSG----------VTGEIHFVDSGY 251 (271)
T ss_pred -cccCCHHHHHHHHHHHhCccccc----------cCceEEeecCCc
Confidence 12456899999999998754321 234777776653
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=175.51 Aligned_cols=228 Identities=11% Similarity=0.040 Sum_probs=151.7
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.+++|++|||||+++||++++++|+++|++|++++|... ........+.. ....+.++.+|++|+++++++++.+
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNV---EEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKI 81 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 367899999999999999999999999999998876321 11111111111 1246889999999999999888764
Q ss_pred -----CccEEEEcccccCc------c----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCC
Q 013602 174 -----SFTHVMHLAAQAGV------R----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNT 234 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~------~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~ 234 (439)
++|+||||||.... . ...++....+++|+.+...+.+.+. +.+ .++||++||...+.
T Consensus 82 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--- 157 (260)
T PRK08416 82 DEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVG-GGSIISLSSTGNLV--- 157 (260)
T ss_pred HHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccC-CEEEEEEecccccc---
Confidence 57999999986421 0 1123345678889888666555543 333 23999999965321
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecC
Q 013602 235 KVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 235 ~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
.......|+.+|++.+.+++.++.++ |+++++|+||.+..+-..................+.
T Consensus 158 ---------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~------ 222 (260)
T PRK08416 158 ---------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELSPL------ 222 (260)
T ss_pred ---------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcCCC------
Confidence 11235689999999999999999985 899999999998655211000000111111111111
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.-+..++|++.+++.++...... ..|+.+.+.++
T Consensus 223 ------~r~~~p~~va~~~~~l~~~~~~~----------~~G~~i~vdgg 256 (260)
T PRK08416 223 ------NRMGQPEDLAGACLFLCSEKASW----------LTGQTIVVDGG 256 (260)
T ss_pred ------CCCCCHHHHHHHHHHHcChhhhc----------ccCcEEEEcCC
Confidence 12567899999999998654321 23477777654
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-20 Score=174.01 Aligned_cols=204 Identities=15% Similarity=0.140 Sum_probs=144.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----C
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-----S 174 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 174 (439)
|+|+||||+|+||.++++.|+++|++|++++|+.+. ... .... ...++.++.+|++|.+++.++++.. +
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~----~~~-~~~~-~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 74 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQER----LQE-LKDE-LGDNLYIAQLDVRNRAAIEEMLASLPAEWRN 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHH----HHH-HHHH-hccceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999994321 111 1111 1246889999999999998887753 5
Q ss_pred ccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 175 FTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
+|+||||||.... ..+.+++...+++|+.|+..+++.+ ++.+. ++||++||...+. ..
T Consensus 75 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~------------~~ 141 (248)
T PRK10538 75 IDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNH-GHIINIGSTAGSW------------PY 141 (248)
T ss_pred CCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEECCcccCC------------CC
Confidence 7999999997421 1233455678999999966665554 44443 4999999976431 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCC---ceeecCCCCcceee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSI---PIFESPDHGTVARD 319 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~ 319 (439)
.+...|+.+|.+.+.+++.++.++ ++++++|+||.+.|+...... +.+... ..+ . ...
T Consensus 142 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~---------~~~~~~~~~~~~----~---~~~ 205 (248)
T PRK10538 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVR---------FKGDDGKAEKTY----Q---NTV 205 (248)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhh---------ccCcHHHHHhhc----c---ccC
Confidence 345789999999999999998874 799999999999876321000 001000 011 0 113
Q ss_pred eeeHHHHHHHHHHHHhhch
Q 013602 320 FTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~ 338 (439)
++..+|+|++++.++..+.
T Consensus 206 ~~~~~dvA~~~~~l~~~~~ 224 (248)
T PRK10538 206 ALTPEDVSEAVWWVATLPA 224 (248)
T ss_pred CCCHHHHHHHHHHHhcCCC
Confidence 4688999999999986554
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=173.70 Aligned_cols=227 Identities=15% Similarity=0.098 Sum_probs=158.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+|+||||+|+||.+++++|+++|++|++++|+.+.. ....... .....+.++.+|++|.+++.++++.+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGG----EETVALIREAGGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999954311 1111111 11246889999999999999888765
Q ss_pred ---CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++++..+++|+.++.++++++ ++.+ .++||++||...+..
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~sS~~~~~~--------- 150 (253)
T PRK06172 81 AYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQG-GGAIVNTASVAGLGA--------- 150 (253)
T ss_pred HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhccC---------
Confidence 67999999997432 1234456678999999987766654 3343 249999999776542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCCh-HHHHHHHHHcCCCCceeecCCCCcce
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMA-YFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
......|+.+|.+.+.+++.++.++ |+++++++||.|-.+....... .......+....+ .
T Consensus 151 ---~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~--~---------- 215 (253)
T PRK06172 151 ---APKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHP--V---------- 215 (253)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccCC--C----------
Confidence 1345789999999999999998875 7999999999997664321000 0111111111111 1
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+...+|++..+++++...... ..|+.+++.++.
T Consensus 216 ~~~~~p~~ia~~~~~l~~~~~~~----------~~G~~i~~dgg~ 250 (253)
T PRK06172 216 GRIGKVEEVASAVLYLCSDGASF----------TTGHALMVDGGA 250 (253)
T ss_pred CCccCHHHHHHHHHHHhCccccC----------cCCcEEEECCCc
Confidence 12456899999999998765321 344788887754
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-20 Score=172.58 Aligned_cols=228 Identities=12% Similarity=0.069 Sum_probs=155.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|++|||||+|+||.++++.|+++|++|++.+|.... .......+.. ...++.++.+|++|.+++.++++..
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~---~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEE---EANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999998884321 1111111111 1246778999999999998887754
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLE----VCKNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~----~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... ..++++..+++|+.++.++++ .+++.+..++||++||...+.
T Consensus 82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~----------- 150 (261)
T PRK08936 82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI----------- 150 (261)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC-----------
Confidence 5799999999754321 234456789999988765544 445554345999999965321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
+..+...|+.+|.+.+.+.+.++.++ |+++++|+||.|.++.......-......+....+ . ..
T Consensus 151 -~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~--~----------~~ 217 (261)
T PRK08936 151 -PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMIP--M----------GY 217 (261)
T ss_pred -CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcCC--C----------CC
Confidence 12345789999999999999988775 89999999999988743211111111111221111 1 12
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|++++++.++...... ..|..+.+.++
T Consensus 218 ~~~~~~va~~~~~l~s~~~~~----------~~G~~i~~d~g 249 (261)
T PRK08936 218 IGKPEEIAAVAAWLASSEASY----------VTGITLFADGG 249 (261)
T ss_pred CcCHHHHHHHHHHHcCcccCC----------ccCcEEEECCC
Confidence 566799999999988754432 23366666554
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-20 Score=174.36 Aligned_cols=198 Identities=16% Similarity=0.120 Sum_probs=143.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
+|+|+||||+|+||.+++++|+++|++|++++|+.+. ......+.....++.++.+|++|.+++.++++++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDA----LQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4789999999999999999999999999999984321 1111111111126889999999999998887764
Q ss_pred CccEEEEcccccCccc-----cccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVRY-----AMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
.+|+||||||...... ..++++..+++|+.|+.+++++ +++.+. ++||++||...+..
T Consensus 78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~-~~iv~isS~~~~~~------------ 144 (257)
T PRK07024 78 LPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARR-GTLVGIASVAGVRG------------ 144 (257)
T ss_pred CCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCC-CEEEEEechhhcCC------------
Confidence 4799999999754221 2234568899999998887764 444543 49999999654311
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
......|+.+|++.+.+++.++.+ +|+++++++||.|.++.... ..... + .++
T Consensus 145 ~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~--------------~~~~~------~----~~~ 200 (257)
T PRK07024 145 LPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH--------------NPYPM------P----FLM 200 (257)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc--------------CCCCC------C----Ccc
Confidence 123568999999999999998765 48999999999998873210 00000 0 135
Q ss_pred eHHHHHHHHHHHHhhc
Q 013602 322 YIDDIVKGCLAALDTA 337 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~ 337 (439)
..+|+++.++.++...
T Consensus 201 ~~~~~a~~~~~~l~~~ 216 (257)
T PRK07024 201 DADRFAARAARAIARG 216 (257)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 6899999999998753
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-20 Score=179.13 Aligned_cols=208 Identities=18% Similarity=0.123 Sum_probs=148.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+++|+||||+|+||.+++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.++++++++.+
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~----l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEG----LEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999994321 111111111 1246888999999999999888754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|++|||||..... .+.++.+..+++|+.|+.++.+. +++.+. ++||++||...+..
T Consensus 82 ~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~-g~iV~isS~~~~~~---------- 150 (334)
T PRK07109 82 ELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDR-GAIIQVGSALAYRS---------- 150 (334)
T ss_pred HCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEeCChhhccC----------
Confidence 689999999974322 22344567899998886665444 445443 49999999887642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh-----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY-----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~-----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
......|+.+|++.+.+++.++.++ ++++++|+||.|.+|... .......... ...
T Consensus 151 --~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~-------~~~~~~~~~~----------~~~ 211 (334)
T PRK07109 151 --IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFD-------WARSRLPVEP----------QPV 211 (334)
T ss_pred --CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhh-------hhhhhccccc----------cCC
Confidence 1235789999999999999887763 599999999999876321 1111111111 111
Q ss_pred eeeeeHHHHHHHHHHHHhhch
Q 013602 318 RDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~ 338 (439)
..+...+|+|++++.++..+.
T Consensus 212 ~~~~~pe~vA~~i~~~~~~~~ 232 (334)
T PRK07109 212 PPIYQPEVVADAILYAAEHPR 232 (334)
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 235678999999999998764
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-20 Score=173.40 Aligned_cols=228 Identities=14% Similarity=0.093 Sum_probs=159.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+|+||||+|+||.+++++|+++|++ |++++|+... ........ .....+.++.+|++|++++.++++.+
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEK----GEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAAD 79 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHH----HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999 9999984321 11111111 11235778999999999999888764
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||..... ...+.++..+++|+.++.++++++.+ .+..++||++||...++..
T Consensus 80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-------- 151 (260)
T PRK06198 80 EAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ-------- 151 (260)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC--------
Confidence 579999999975422 12334457899999999998887743 2222489999998776421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC--C---ChHHHHHHHHHcCCCCceeecCCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP--D---MAYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~--~---~~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
.....|+.+|.+.|.+++.++.++ +++++.++||.++++.... . .....+........
T Consensus 152 ----~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---------- 217 (260)
T PRK06198 152 ----PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQ---------- 217 (260)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccC----------
Confidence 235789999999999999988774 6999999999999875321 0 00011111111111
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
....+++++|++++++.++...... ..|+++.+.++.
T Consensus 218 --~~~~~~~~~~~a~~~~~l~~~~~~~----------~~G~~~~~~~~~ 254 (260)
T PRK06198 218 --PFGRLLDPDEVARAVAFLLSDESGL----------MTGSVIDFDQSV 254 (260)
T ss_pred --CccCCcCHHHHHHHHHHHcChhhCC----------ccCceEeECCcc
Confidence 1223678999999999998755321 234788877653
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=199.49 Aligned_cols=238 Identities=16% Similarity=0.107 Sum_probs=166.3
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.+.+|+||||||+|+||.++++.|+++|++|++++|+.+. ............++.++.+|++|.+++.++++..
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~----~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEA----AEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHH----HHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999994321 1111111111147889999999999998888754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+...+||++||...+..
T Consensus 495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~---------- 564 (681)
T PRK08324 495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNP---------- 564 (681)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCC----------
Confidence 689999999975432 2234456789999999999977664 4332249999999665321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeecccc-CCCCCCCChHHHHHHHHHcCCCCc----eeecCCCC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVY-GPWGRPDMAYFFFTRDILNRKSIP----IFESPDHG 314 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~-G~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~ 314 (439)
......|+.+|.+.+.+++.++.++ |+++++|+|+.|| +++...... ........+.... .+ ..+
T Consensus 565 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~--~~~~~~~~g~~~~~~~~~~---~~~ 637 (681)
T PRK08324 565 --GPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEW--IEARAAAYGLSEEELEEFY---RAR 637 (681)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchh--hhhhhhhccCChHHHHHHH---Hhc
Confidence 1345789999999999999998875 6999999999998 553221111 0111111222211 12 234
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
...+.+++++|+|++++.++...... ..|++|++.+|...
T Consensus 638 ~~l~~~v~~~DvA~a~~~l~s~~~~~----------~tG~~i~vdgG~~~ 677 (681)
T PRK08324 638 NLLKREVTPEDVAEAVVFLASGLLSK----------TTGAIITVDGGNAA 677 (681)
T ss_pred CCcCCccCHHHHHHHHHHHhCccccC----------CcCCEEEECCCchh
Confidence 55667999999999999987532211 23489999887543
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=172.18 Aligned_cols=226 Identities=15% Similarity=0.120 Sum_probs=152.5
Q ss_pred CCCCEEEEECCCC--hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhc-CCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAG--FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLER-SGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+++||||++ +||.++++.|+++|++|++.+|+.. ..+...+.... ....++++|++|+++++++++.+
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~-----~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~ 80 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEV-----LEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDI 80 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchH-----HHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHH
Confidence 5789999999997 8999999999999999999988421 11111111111 22346789999999999888754
Q ss_pred -----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|++|||||.... ..+.+++...+++|+.++..+++.+...- ...+||++||.+...
T Consensus 81 ~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~-------- 152 (260)
T PRK06603 81 KEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK-------- 152 (260)
T ss_pred HHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc--------
Confidence 58999999997431 12234556789999999888888764321 123999999965421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.......|+.+|++.+.+++.++.++ |+++++|.||.|..+..............+.... +.
T Consensus 153 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--p~--------- 217 (260)
T PRK06603 153 ----VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATA--PL--------- 217 (260)
T ss_pred ----CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcC--Cc---------
Confidence 11234689999999999999999874 7999999999997653110000011111111111 11
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+...+|+|.+++.++...... ..|+.+.+.++
T Consensus 218 -~r~~~pedva~~~~~L~s~~~~~----------itG~~i~vdgG 251 (260)
T PRK06603 218 -KRNTTQEDVGGAAVYLFSELSKG----------VTGEIHYVDCG 251 (260)
T ss_pred -CCCCCHHHHHHHHHHHhCccccc----------CcceEEEeCCc
Confidence 12466899999999998754322 23467777655
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=171.66 Aligned_cols=227 Identities=12% Similarity=0.070 Sum_probs=154.0
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|++|||||+ ++||.+++++|+++|++|++.+|+... .+...... +. ...+.++++|++|.++++++++.+
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~-~~~~~~~~-~~--~~~~~~~~~D~~~~~~v~~~~~~~~ 83 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA-RPYVEPLA-EE--LDAPIFLPLDVREPGQLEAVFARIA 83 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh-HHHHHHHH-Hh--hccceEEecCcCCHHHHHHHHHHHH
Confidence 678999999998 599999999999999999999985321 01111111 11 124568899999999998888764
Q ss_pred ----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|++|||||.... ..+.++++..+++|+.++..+++++...-. ..+||++||.....
T Consensus 84 ~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~--------- 154 (258)
T PRK07533 84 EEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK--------- 154 (258)
T ss_pred HHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc---------
Confidence 58999999997432 123345678999999998888887653321 23899999865321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
.......|+.+|++.+.+++.++.++ |+++++|+||.|..+-.................. +.
T Consensus 155 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--p~---------- 219 (258)
T PRK07533 155 ---VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERA--PL---------- 219 (258)
T ss_pred ---CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcC--Cc----------
Confidence 11235689999999999999998874 8999999999997653210000111112222211 11
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+...+|++.+++.++...... ..|+.+.+.++
T Consensus 220 ~r~~~p~dva~~~~~L~s~~~~~----------itG~~i~vdgg 253 (258)
T PRK07533 220 RRLVDIDDVGAVAAFLASDAARR----------LTGNTLYIDGG 253 (258)
T ss_pred CCCCCHHHHHHHHHHHhChhhcc----------ccCcEEeeCCc
Confidence 12567899999999998654321 23467776554
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-20 Score=170.53 Aligned_cols=216 Identities=17% Similarity=0.159 Sum_probs=153.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
+++|+++||||+|+||.+++++|+++|++|++++|+.... ...++.++.+|++|+ ++++++.. ++
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~------------~~~~~~~~~~D~~~~--~~~~~~~~~~i 68 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD------------LSGNFHFLQLDLSDD--LEPLFDWVPSV 68 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc------------cCCcEEEEECChHHH--HHHHHHhhCCC
Confidence 5678999999999999999999999999999999843210 124688999999998 55555443 56
Q ss_pred cEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 176 d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~ 246 (439)
|+||||||.... ....++++..+++|+.++.++++++.. .+ .++||++||...+.. ..
T Consensus 69 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~------------~~ 135 (235)
T PRK06550 69 DILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERK-SGIIINMCSIASFVA------------GG 135 (235)
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhccC------------CC
Confidence 999999996421 122345667899999999999888753 33 248999999765321 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeH
Q 013602 247 PASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYI 323 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v 323 (439)
....|+.+|.+.+.+++.++.++ |+++++|+||.|.++.......-..+...+....+ ...+...
T Consensus 136 ~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 203 (235)
T PRK06550 136 GGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARETP------------IKRWAEP 203 (235)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccCC------------cCCCCCH
Confidence 35689999999999999998875 89999999999988754322111112222222211 1225678
Q ss_pred HHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 324 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+|+|.+++.++...... ..|+++.+.++
T Consensus 204 ~~~a~~~~~l~s~~~~~----------~~g~~~~~~gg 231 (235)
T PRK06550 204 EEVAELTLFLASGKADY----------MQGTIVPIDGG 231 (235)
T ss_pred HHHHHHHHHHcChhhcc----------CCCcEEEECCc
Confidence 99999999998654321 23367777654
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=168.93 Aligned_cols=222 Identities=14% Similarity=0.080 Sum_probs=153.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++++++|||||+|+||++++++|+++|+.|++.+|+.+ .... .... ...++.++.+|++|.+++.+++++.
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~----~~~~-~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVE----KLEA-LAAE-LGERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHH----HHHH-HHHH-hCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999988887321 1111 1111 1246888999999999998887653
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCc-ccCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSS-VYGLNTKVPFSEKD 242 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~-v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.++.++++++.+ .+ .++||++||.. .++.
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~---------- 146 (245)
T PRK12936 78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRR-YGRIINITSVVGVTGN---------- 146 (245)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhC-CCEEEEECCHHhCcCC----------
Confidence 579999999975321 22345678899999999888887642 33 34999999964 4331
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
.....|+.+|.+.+.+++.++++. |+++++++||.+..+...... ......... ..+ ...
T Consensus 147 ---~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~--~~~~~~~~~--~~~----------~~~ 209 (245)
T PRK12936 147 ---PGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLN--DKQKEAIMG--AIP----------MKR 209 (245)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccC--hHHHHHHhc--CCC----------CCC
Confidence 234679999999999998887763 899999999988765332110 011111111 111 112
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+...+|++.+++.++...... ..|+++++.++.
T Consensus 210 ~~~~~~ia~~~~~l~~~~~~~----------~~G~~~~~~~g~ 242 (245)
T PRK12936 210 MGTGAEVASAVAYLASSEAAY----------VTGQTIHVNGGM 242 (245)
T ss_pred CcCHHHHHHHHHHHcCccccC----------cCCCEEEECCCc
Confidence 556899999999887643321 245899988763
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-20 Score=177.21 Aligned_cols=216 Identities=18% Similarity=0.177 Sum_probs=150.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++++||||||+|+||.++++.|+++|++|++++|+.+ .......+......+..+.+|++|.++++++++++
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEA----ELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999432 11111111111235667779999999998888754
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN--PQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~--~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||..... .+.++.+..+++|+.|+.++++++.... ...+||++||...+.. .
T Consensus 83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~------------~ 150 (296)
T PRK05872 83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAA------------A 150 (296)
T ss_pred cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCC------------C
Confidence 579999999975432 1233456789999999999988875321 1238999999766431 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.....|+.+|.+.+.+++.++.+ .|+++++++||.+..+..............+....+.+. ..++.
T Consensus 151 ~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~p~----------~~~~~ 220 (296)
T PRK05872 151 PGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPWPL----------RRTTS 220 (296)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCCCcc----------cCCCC
Confidence 24578999999999999998876 489999999999987632211000011111111111111 13567
Q ss_pred HHHHHHHHHHHHhhch
Q 013602 323 IDDIVKGCLAALDTAE 338 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~ 338 (439)
.+|++++++.++....
T Consensus 221 ~~~va~~i~~~~~~~~ 236 (296)
T PRK05872 221 VEKCAAAFVDGIERRA 236 (296)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 8999999999987544
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-20 Score=173.98 Aligned_cols=199 Identities=16% Similarity=0.036 Sum_probs=146.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++++++|||||+|+||.+++++|+++|++|++.+|+.+. ....... ...+.++.+|++|++++.++++.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~-----~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEAL-----AKETAAE--LGLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHH-----HHHHHHH--hccceEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999983321 1111111 125888999999999988877764
Q ss_pred --CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||...... ..+.....+++|+.|+.++++.+. +.+. ++||++||...+..
T Consensus 76 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~----------- 143 (273)
T PRK07825 76 LGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGR-GHVVNVASLAGKIP----------- 143 (273)
T ss_pred cCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEEcCccccCC-----------
Confidence 5799999999754322 223345789999999888776654 4443 49999999765321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
......|+.+|.+.+.+.+.++.++ |+++++|+||.+..+... +.. . .....+
T Consensus 144 -~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~--------------~~~--~-------~~~~~~ 199 (273)
T PRK07825 144 -VPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA--------------GTG--G-------AKGFKN 199 (273)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc--------------ccc--c-------ccCCCC
Confidence 1346789999999999988887764 899999999988654211 100 0 011236
Q ss_pred eeHHHHHHHHHHHHhhch
Q 013602 321 TYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~ 338 (439)
+.++|+|++++.++..+.
T Consensus 200 ~~~~~va~~~~~~l~~~~ 217 (273)
T PRK07825 200 VEPEDVAAAIVGTVAKPR 217 (273)
T ss_pred CCHHHHHHHHHHHHhCCC
Confidence 889999999999998654
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=171.25 Aligned_cols=229 Identities=12% Similarity=0.073 Sum_probs=153.7
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+.+|+++||||+ ++||.+++++|+++|++|++.+|+... .....+.. +.....++.++.+|++|.++++++++.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~-~~~~~~~~-~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERL-EKEVRELA-DTLEGQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccc-hHHHHHHH-HHcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence 578999999997 899999999999999999999884321 11111111 1112346888999999999998888754
Q ss_pred ----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|++|||||.... ..+.+++...+++|+.++..+++++...-. ..+||++||....-
T Consensus 83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--------- 153 (257)
T PRK08594 83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER--------- 153 (257)
T ss_pred HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc---------
Confidence 58999999997431 112233456789999998887777654321 23999999965421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
+......|+.+|++.+.+++.++.++ |+++++|+||.|..+..............+... .+ .
T Consensus 154 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~--~p----------~ 218 (257)
T PRK08594 154 ---VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEER--AP----------L 218 (257)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhc--CC----------c
Confidence 11234689999999999999998874 799999999999765211000000011111111 11 1
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+...+|++.+++.++...... ..|+++.+.++
T Consensus 219 ~r~~~p~~va~~~~~l~s~~~~~----------~tG~~~~~dgg 252 (257)
T PRK08594 219 RRTTTQEEVGDTAAFLFSDLSRG----------VTGENIHVDSG 252 (257)
T ss_pred cccCCHHHHHHHHHHHcCccccc----------ccceEEEECCc
Confidence 12567899999999988654421 23367776554
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=174.70 Aligned_cols=228 Identities=11% Similarity=0.051 Sum_probs=152.7
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+.+|+||||||+ ++||.++++.|+++|++|++.+|+... ........ .... .. .++.+|++|.++++++++.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~-~~~~~~~~-~~~~-~~-~~~~~Dv~d~~~v~~~~~~i~ 78 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEAL-KKRVEPIA-QELG-SD-YVYELDVSKPEHFKSLAESLK 78 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHH-HHHHHHHH-HhcC-Cc-eEEEecCCCHHHHHHHHHHHH
Confidence 578999999997 799999999999999999999984210 00111111 1111 12 67899999999999888764
Q ss_pred ----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|++|||||.... ..+.++++..+++|+.|+..+.+++...- ..++||++||.+...
T Consensus 79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~--------- 149 (274)
T PRK08415 79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK--------- 149 (274)
T ss_pred HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc---------
Confidence 68999999997431 12234556799999999888887765422 123899999865321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
+......|+.+|++.+.+++.++.++ |+++++|.||.|..+............. .. ....+.
T Consensus 150 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~-~~-~~~~pl---------- 214 (274)
T PRK08415 150 ---YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMILK-WN-EINAPL---------- 214 (274)
T ss_pred ---CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHhh-hh-hhhCch----------
Confidence 11234689999999999999999874 8999999999997652110000000000 00 001111
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.-+...+|+|.+++.++...... ..|+.+.+.++.
T Consensus 215 ~r~~~pedva~~v~fL~s~~~~~----------itG~~i~vdGG~ 249 (274)
T PRK08415 215 KKNVSIEEVGNSGMYLLSDLSSG----------VTGEIHYVDAGY 249 (274)
T ss_pred hccCCHHHHHHHHHHHhhhhhhc----------ccccEEEEcCcc
Confidence 12567899999999998754321 233777776653
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-20 Score=169.00 Aligned_cols=200 Identities=17% Similarity=0.153 Sum_probs=142.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-CccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~d~ 177 (439)
+|++|||||+|+||+++++.|+++ ++|++++|+.. ..... .. ...+++++.+|++|.+++.++++.+ ++|+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~----~~~~~-~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 74 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAE----RLDEL-AA--ELPGATPFPVDLTDPEAIAAAVEQLGRLDV 74 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHH----HHHHH-HH--HhccceEEecCCCCHHHHHHHHHhcCCCCE
Confidence 579999999999999999999999 99999999421 11111 11 1236889999999999999999865 5799
Q ss_pred EEEcccccCccc----cccChhHHHHHHHHHH----HHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 013602 178 VMHLAAQAGVRY----AMQNPNSYVHSNIAGL----VSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPAS 249 (439)
Q Consensus 178 Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt----~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~ 249 (439)
|||+||...... ..++....+++|+.++ .++++.+++.+ +++|++||...++. ..+..
T Consensus 75 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~v~~ss~~~~~~------------~~~~~ 140 (227)
T PRK08219 75 LVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH--GHVVFINSGAGLRA------------NPGWG 140 (227)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CeEEEEcchHhcCc------------CCCCc
Confidence 999999754321 1223456789999984 44555555554 39999999776532 13457
Q ss_pred hHHHHHHHHHHHHHHHHhHh-C-CcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHH
Q 013602 250 LYAATKKAGEEIAHTYNHIY-G-LSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~~~-g-i~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva 327 (439)
.|+.+|.+.+.+++.++.+. + +++++++||.+.++... ........ . .....+++++|++
T Consensus 141 ~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~----------~~~~~~~~-~-------~~~~~~~~~~dva 202 (227)
T PRK08219 141 SYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQR----------GLVAQEGG-E-------YDPERYLRPETVA 202 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhh----------hhhhhhcc-c-------cCCCCCCCHHHHH
Confidence 89999999999999887653 5 89999999987665221 01111100 1 1123579999999
Q ss_pred HHHHHHHhhch
Q 013602 328 KGCLAALDTAE 338 (439)
Q Consensus 328 ~a~~~~l~~~~ 338 (439)
++++.+++.+.
T Consensus 203 ~~~~~~l~~~~ 213 (227)
T PRK08219 203 KAVRFAVDAPP 213 (227)
T ss_pred HHHHHHHcCCC
Confidence 99999997654
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-19 Score=169.91 Aligned_cols=226 Identities=14% Similarity=0.120 Sum_probs=157.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+++||||+|+||.+++++|+++|++|++++|+.+. .......... ..++.++++|++|.+++++++++.
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQEL----VDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHH----HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 577999999999999999999999999999999884321 1111111111 236889999999999999988763
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCc-ccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSS-VYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~-v~g~~~~~~~~e~ 241 (439)
++|+||||||..... ...+++...+++|+.++..+.+++. +.+ .++||++||.. .++
T Consensus 84 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~---------- 152 (265)
T PRK07097 84 EVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKG-HGKIINICSMMSELG---------- 152 (265)
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCccccCC----------
Confidence 579999999985432 2334556789999999887777664 333 34999999954 332
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCCh------HHHHHHHHHcCCCCceeecCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMA------YFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~ 312 (439)
..+...|+.+|.+.+.+++.+++++ |++++.|+||.|.++....... ...+...+....+
T Consensus 153 ---~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 221 (265)
T PRK07097 153 ---RETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTP-------- 221 (265)
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCC--------
Confidence 1346789999999999999999885 8999999999998874321100 0001111111111
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
...+...+|+|..++.++...... ..|+.+.+.++.
T Consensus 222 ----~~~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~gg~ 257 (265)
T PRK07097 222 ----AARWGDPEDLAGPAVFLASDASNF----------VNGHILYVDGGI 257 (265)
T ss_pred ----ccCCcCHHHHHHHHHHHhCcccCC----------CCCCEEEECCCc
Confidence 112566899999999998764322 233677776653
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=171.89 Aligned_cols=231 Identities=12% Similarity=0.095 Sum_probs=154.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+++||||+|+||.+++++|+++|++|++++|+.+..+...... .+......+.++.+|++|.++++++++.+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARL-REKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH-HhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999543211111110 11111236788999999999998887754
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... ...+++...+++|+.+...+++.+ ++.+. ++||++||...+..
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~----------- 152 (265)
T PRK07062 85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAA-ASIVCVNSLLALQP----------- 152 (265)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC-cEEEEeccccccCC-----------
Confidence 579999999974322 123345678899999866666554 44432 39999999765321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC--------CChHHHHHHHHHcCCCCceeecCC
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP--------DMAYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
......|+.+|.+.+.+++.++.++ |+++++|+||.|..+.... ...+..+...+.....++.
T Consensus 153 -~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----- 226 (265)
T PRK07062 153 -EPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGIPL----- 226 (265)
T ss_pred -CCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCCCc-----
Confidence 1234689999999999999988874 8999999999997763210 0001111111111111111
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.-+...+|+|.+++.++...... ..|+++.+.++
T Consensus 227 -----~r~~~p~~va~~~~~L~s~~~~~----------~tG~~i~vdgg 260 (265)
T PRK07062 227 -----GRLGRPDEAARALFFLASPLSSY----------TTGSHIDVSGG 260 (265)
T ss_pred -----CCCCCHHHHHHHHHHHhCchhcc----------cccceEEEcCc
Confidence 12567899999999987643321 23477877665
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=168.84 Aligned_cols=224 Identities=14% Similarity=0.071 Sum_probs=153.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+++||||+|+||++++++|+++|++|++.++... .......+.. ....+.++.+|++|.+++.++++++
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNS----PRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVK 76 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCCh----HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999988664221 1111111111 1235778899999999998888754
Q ss_pred ----CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++++..+++|+.++..+++++ ++.+. ++||++||.....
T Consensus 77 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~---------- 145 (246)
T PRK12938 77 AEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGW-GRIINISSVNGQK---------- 145 (246)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-eEEEEEechhccC----------
Confidence 57999999997432 1234456788999999977766655 34443 3999999965321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
.......|+.+|.+.+.+++.++++ .|+++++|+||.+.+|.... ....+...+....+. .
T Consensus 146 --~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~--~~~~~~~~~~~~~~~------------~ 209 (246)
T PRK12938 146 --GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA--IRPDVLEKIVATIPV------------R 209 (246)
T ss_pred --CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhh--cChHHHHHHHhcCCc------------c
Confidence 1134678999999999999988876 38999999999998874321 111222222222111 1
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.+...+|++.+++.++...... ..|+.+.+.++
T Consensus 210 ~~~~~~~v~~~~~~l~~~~~~~----------~~g~~~~~~~g 242 (246)
T PRK12938 210 RLGSPDEIGSIVAWLASEESGF----------STGADFSLNGG 242 (246)
T ss_pred CCcCHHHHHHHHHHHcCcccCC----------ccCcEEEECCc
Confidence 2456899999999887654321 23477877654
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=169.42 Aligned_cols=196 Identities=16% Similarity=0.119 Sum_probs=145.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--Ccc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--SFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d 176 (439)
+++|+||||+|+||.+++++|+++|++|++++|+.+ ..........++.++.+|++|.+++++++++. .+|
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d 73 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQS-------VLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPE 73 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHH-------HHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCC
Confidence 368999999999999999999999999999999321 11111111246889999999999999999875 479
Q ss_pred EEEEcccccCc-c---ccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc-ccCCCCCCCCCCCCCCCCCCCh
Q 013602 177 HVMHLAAQAGV-R---YAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSS-VYGLNTKVPFSEKDRTDQPASL 250 (439)
Q Consensus 177 ~Vi~~Ag~~~~-~---~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~-v~g~~~~~~~~e~~~~~~p~~~ 250 (439)
++|||||.... . ...++.+..+++|+.|+.++++++.... ...+||++||.. .++ ......
T Consensus 74 ~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~-------------~~~~~~ 140 (240)
T PRK06101 74 LWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELA-------------LPRAEA 140 (240)
T ss_pred EEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccC-------------CCCCch
Confidence 99999986422 1 1223345789999999999999987631 123899999854 222 134568
Q ss_pred HHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHH
Q 013602 251 YAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327 (439)
Q Consensus 251 Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva 327 (439)
|+.+|.+.+.+++.++.+ .|+++++++||.|+++...... ...+ ..+..+|++
T Consensus 141 Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~------------~~~~------------~~~~~~~~a 196 (240)
T PRK06101 141 YGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNT------------FAMP------------MIITVEQAS 196 (240)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCC------------CCCC------------cccCHHHHH
Confidence 999999999999998865 4899999999999987433110 0000 136789999
Q ss_pred HHHHHHHhhch
Q 013602 328 KGCLAALDTAE 338 (439)
Q Consensus 328 ~a~~~~l~~~~ 338 (439)
+.++..++...
T Consensus 197 ~~i~~~i~~~~ 207 (240)
T PRK06101 197 QEIRAQLARGK 207 (240)
T ss_pred HHHHHHHhcCC
Confidence 99999988654
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=168.99 Aligned_cols=224 Identities=14% Similarity=0.094 Sum_probs=150.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEE-CCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLD-NFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
++||||||+|+||.+++++|+++|++|+++. |+.+ ...+...+.. ....+.++++|++|.+++.++++.+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~ 77 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLH----AAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHD 77 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChH----HHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999998754 4211 1111111111 1235788999999999999988864
Q ss_pred -CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCKNA------NPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~~~------~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||..... .+.++....+++|+.++.++++++... +..++||++||...+...
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~-------- 149 (247)
T PRK09730 78 EPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA-------- 149 (247)
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC--------
Confidence 579999999974321 122344578999999998777765432 112379999997543211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
+ .....|+.+|.+.+.+++.++.++ |++++++|||.+|+|....... ...........+...
T Consensus 150 --~-~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------- 214 (247)
T PRK09730 150 --P-GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGE-PGRVDRVKSNIPMQR----------- 214 (247)
T ss_pred --C-CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCC-HHHHHHHHhcCCCCC-----------
Confidence 1 113469999999999999887764 8999999999999985432111 122222222222111
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+++|++++++.++...... ..|+.|.+.++
T Consensus 215 -~~~~~dva~~~~~~~~~~~~~----------~~g~~~~~~g~ 246 (247)
T PRK09730 215 -GGQPEEVAQAIVWLLSDKASY----------VTGSFIDLAGG 246 (247)
T ss_pred -CcCHHHHHHHHHhhcChhhcC----------ccCcEEecCCC
Confidence 236899999999888654321 23367776653
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=179.33 Aligned_cols=208 Identities=14% Similarity=0.153 Sum_probs=149.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+|+||||+|+||++++++|+++|++|++++|+.+. ......+. .....+.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~----l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEA----LQAVAEECRALGAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999994321 11111111 11246778899999999999888653
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|++|||||...... +.++.+..+++|+.|+.++.+++ ++.+. .+||++||...+..
T Consensus 81 ~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~-g~iV~isS~~~~~~---------- 149 (330)
T PRK06139 81 FGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGH-GIFINMISLGGFAA---------- 149 (330)
T ss_pred hcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCC-CEEEEEcChhhcCC----------
Confidence 5799999999754322 22345578999999988877765 34442 39999999765421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
......|+.+|++.+.+++.++.++ |++++.|+||.|.+|....... ..+... ....
T Consensus 150 --~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~--------~~~~~~---------~~~~ 210 (330)
T PRK06139 150 --QPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGAN--------YTGRRL---------TPPP 210 (330)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccc--------cccccc---------cCCC
Confidence 1235789999999999999988773 7999999999999885321100 001110 0111
Q ss_pred eeeeHHHHHHHHHHHHhhch
Q 013602 319 DFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~ 338 (439)
..+..+|+|++++.+++.+.
T Consensus 211 ~~~~pe~vA~~il~~~~~~~ 230 (330)
T PRK06139 211 PVYDPRRVAKAVVRLADRPR 230 (330)
T ss_pred CCCCHHHHHHHHHHHHhCCC
Confidence 25688999999999988665
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=170.08 Aligned_cols=226 Identities=14% Similarity=0.113 Sum_probs=152.0
Q ss_pred CCCCEEEEECCCC--hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAG--FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+++||||++ +||+++++.|+++|++|++.+|+. . ......+.. ....+.++.+|++|.++++++++..
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 78 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-K----LKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAEL 78 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-h----HHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHH
Confidence 5789999999986 999999999999999999988842 1 111111111 1235678899999999999888754
Q ss_pred -----CccEEEEcccccCcc---------ccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR---------YAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~---------~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~ 238 (439)
++|++|||||..... .+.++++..+++|+.+...+.+++...- ...+||++||.+...
T Consensus 79 ~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~------- 151 (262)
T PRK07984 79 GKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER------- 151 (262)
T ss_pred HhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC-------
Confidence 589999999974321 1223455788999999887777764321 123899999865321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
+......|+.+|.+.+.+++.++.++ |+++++|.||.|..+-.........+....... .+.
T Consensus 152 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~--~p~-------- 216 (262)
T PRK07984 152 -----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAV--TPI-------- 216 (262)
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHc--CCC--------
Confidence 11235689999999999999999874 899999999998764211000001111111111 111
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+...+|++.+++.++...... ..|+.+.+.++
T Consensus 217 --~r~~~pedva~~~~~L~s~~~~~----------itG~~i~vdgg 250 (262)
T PRK07984 217 --RRTVTIEDVGNSAAFLCSDLSAG----------ISGEVVHVDGG 250 (262)
T ss_pred --cCCCCHHHHHHHHHHHcCccccc----------ccCcEEEECCC
Confidence 12567899999999998754321 23467777665
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-19 Score=168.20 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=156.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+++||||+|+||++++++|+++|++|++++|+.. ......+. ....++.++.+|++|.++++++++..
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 78 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-----IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKE 78 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-----HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999998431 11111111 11246788999999999999888764
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... +.++.+..+++|+.++.++++++.+ .+ .++||++||.....
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~----------- 146 (263)
T PRK08226 79 KEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARK-DGRIVMMSSVTGDM----------- 146 (263)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEECcHHhcc-----------
Confidence 6899999999743322 2233456799999999998888653 23 24899999864310
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC------CChHHHHHHHHHcCCCCceeecCCC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP------DMAYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
........|+.+|.+.+.+++.++.++ |++++.|+||.+.++-... ......+...+..+.+.
T Consensus 147 ~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------- 218 (263)
T PRK08226 147 VADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPL-------- 218 (263)
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCCC--------
Confidence 011235689999999999999998875 7999999999998873210 00011122222222111
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+...+|+|.+++.++...... ..|+++.+.++
T Consensus 219 ----~~~~~~~~va~~~~~l~~~~~~~----------~~g~~i~~dgg 252 (263)
T PRK08226 219 ----RRLADPLEVGELAAFLASDESSY----------LTGTQNVIDGG 252 (263)
T ss_pred ----CCCCCHHHHHHHHHHHcCchhcC----------CcCceEeECCC
Confidence 12467899999998887543321 23467777665
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=172.22 Aligned_cols=225 Identities=15% Similarity=0.114 Sum_probs=154.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|++|||||+|+||.+++++|+++|++|++++|+.+. ..... .. ...++.++++|++|.+++.++++.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~-~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEK----LASLR-QR-FGDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHH-HH-hCCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999984321 11111 11 1246888999999999988888764
Q ss_pred --CccEEEEcccccCcc-----cccc----ChhHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR-----YAMQ----NPNSYVHSNIAGLVSLLEVCKNAN--PQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~-----~~~~----~~~~~~~~Nv~gt~~ll~~~~~~~--~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||+.... .+.+ .++..+++|+.++..+++++...- ...+||++||...+..
T Consensus 78 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-------- 149 (263)
T PRK06200 78 FGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYP-------- 149 (263)
T ss_pred cCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCC--------
Confidence 689999999974321 1112 145678999999888888775321 1238999999766431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCC------h---HHHHHHHHHcCCCCceee
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDM------A---YFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~------~---~~~~~~~~~~g~~~~~~~ 309 (439)
..+...|+.+|.+.+.+++.++.++ ++++++|.||.|..+-..... . .......+... .+
T Consensus 150 ----~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p--- 220 (263)
T PRK06200 150 ----GGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAI--TP--- 220 (263)
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcC--CC---
Confidence 1235689999999999999999885 599999999999766321100 0 00011111111 11
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhc-hhccCCCCCccCCCCCcEEEecCC
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTA-EKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..-+...+|++.+++.++... ... ..|+++.+.+|
T Consensus 221 -------~~r~~~~~eva~~~~fl~s~~~~~~----------itG~~i~vdgG 256 (263)
T PRK06200 221 -------LQFAPQPEDHTGPYVLLASRRNSRA----------LTGVVINADGG 256 (263)
T ss_pred -------CCCCCCHHHHhhhhhheecccccCc----------ccceEEEEcCc
Confidence 123567899999999987654 321 34478877665
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=170.45 Aligned_cols=227 Identities=11% Similarity=0.063 Sum_probs=151.3
Q ss_pred CCCCEEEEECC--CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGA--AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+++|||| +++||+++++.|+++|++|++..|... ... ...+.. .......+++|++|.++++++++.+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDK----LEE-RVRKMAAELDSELVFRCDVASDDEINQVFADL 78 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHH----HHH-HHHHHHhccCCceEEECCCCCHHHHHHHHHHH
Confidence 67899999997 679999999999999999999877311 111 111111 1124567899999999999888764
Q ss_pred -----CccEEEEcccccCcc---------ccccChhHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCCcccCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR---------YAMQNPNSYVHSNIAGLVSLLEVCKNA--NPQPAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~---------~~~~~~~~~~~~Nv~gt~~ll~~~~~~--~~~~~~V~~SS~~v~g~~~~~~ 237 (439)
++|++|||||+.... .+.+.++..+++|+.++..+.+++... ...++||++||.+.+.
T Consensus 79 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~------ 152 (261)
T PRK08690 79 GKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR------ 152 (261)
T ss_pred HHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc------
Confidence 689999999985321 112234567889999987777765432 1123899999876431
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCC
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
.......|+.+|.+.+.+++.++.+ +|++++.|.||.|..+-.............+.+. .+.
T Consensus 153 ------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~--~p~------- 217 (261)
T PRK08690 153 ------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAH--NPL------- 217 (261)
T ss_pred ------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhc--CCC-------
Confidence 1134578999999999999998876 4899999999999765321000001111111111 111
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+...+|+|.+++.++...... ..|+++.+.++.
T Consensus 218 ---~r~~~peevA~~v~~l~s~~~~~----------~tG~~i~vdgG~ 252 (261)
T PRK08690 218 ---RRNVTIEEVGNTAAFLLSDLSSG----------ITGEITYVDGGY 252 (261)
T ss_pred ---CCCCCHHHHHHHHHHHhCcccCC----------cceeEEEEcCCc
Confidence 12567899999999998755432 234777776553
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-19 Score=166.88 Aligned_cols=220 Identities=14% Similarity=0.137 Sum_probs=154.6
Q ss_pred EEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-----Cc
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-----SF 175 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-----~~ 175 (439)
|||||++|+||.+++++|+++|++|++++|.... .......... ....+.++.+|++|.++++++++++ ++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEE---GAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPI 77 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchh---HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 6899999999999999999999999999985421 1111111111 1235789999999999999888764 57
Q ss_pred cEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCC-cccCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCKNA---NPQPAIVWASSS-SVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 176 d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~---~~~~~~V~~SS~-~v~g~~~~~~~~e~~~~~~p 247 (439)
|+|||+||.... ..+.++++..+++|+.++.++++++.+. ...++||++||. +++|. .+
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~-------------~~ 144 (239)
T TIGR01830 78 DILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGN-------------AG 144 (239)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC-------------CC
Confidence 999999997532 1233456788999999999999988653 113499999995 45542 24
Q ss_pred CChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
...|+.+|.+.+.+++.++++ .|+++++++||.+.++.... ....+...+....+. ..+.+++
T Consensus 145 ~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~--~~~~~~~~~~~~~~~------------~~~~~~~ 210 (239)
T TIGR01830 145 QANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDK--LSEKVKKKILSQIPL------------GRFGTPE 210 (239)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhh--cChHHHHHHHhcCCc------------CCCcCHH
Confidence 578999999999999988776 38999999999987653321 111222222222111 1256789
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
|++.+++.++...... ..|++||+.++
T Consensus 211 ~~a~~~~~~~~~~~~~----------~~g~~~~~~~g 237 (239)
T TIGR01830 211 EVANAVAFLASDEASY----------ITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHHhCcccCC----------cCCCEEEeCCC
Confidence 9999999888543221 24489998654
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=172.07 Aligned_cols=207 Identities=14% Similarity=0.057 Sum_probs=145.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
|+|+||||+|+||++++++|+++|++|++.+|+.+. ......+. .....+.++.+|++|.+++.++++.+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEG----GEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999984321 11111111 12346888999999999998888753
Q ss_pred CccEEEEcccccCcccc----ccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVRYA----MQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||....... .++.+..+++|+.++.++.+.+ ++.+. ++||++||...+.. .
T Consensus 77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~vsS~~~~~~------------~ 143 (270)
T PRK05650 77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKS-GRIVNIASMAGLMQ------------G 143 (270)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCC-CEEEEECChhhcCC------------C
Confidence 57999999997543221 2334567899999877766654 55553 49999999765431 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC-hHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM-AYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
.....|+.+|++.+.+.+.++.++ |+++++|+||.+.++...... ........ .. ......++
T Consensus 144 ~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~-~~------------~~~~~~~~ 210 (270)
T PRK05650 144 PAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQ-VG------------KLLEKSPI 210 (270)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHH-HH------------HHhhcCCC
Confidence 345789999999999999998874 899999999999887533110 00000000 00 00012357
Q ss_pred eHHHHHHHHHHHHhh
Q 013602 322 YIDDIVKGCLAALDT 336 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~ 336 (439)
+++|+|++++.+++.
T Consensus 211 ~~~~vA~~i~~~l~~ 225 (270)
T PRK05650 211 TAADIADYIYQQVAK 225 (270)
T ss_pred CHHHHHHHHHHHHhC
Confidence 899999999999874
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=171.47 Aligned_cols=229 Identities=13% Similarity=0.049 Sum_probs=154.0
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+.+|+++||||+ ++||.+++++|+++|++|++.+|+.+.... .....+.. ....+.++.+|++|.++++++++.+
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRF--EKKVRELTEPLNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchH--HHHHHHHHhccCcceEeecCcCCHHHHHHHHHHH
Confidence 578999999986 899999999999999999988774432111 11111111 1134678999999999999888765
Q ss_pred -----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|++|||||.... ..+.++++..+++|+.++..+.+++.+.- ..++||++||.....
T Consensus 82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~-------- 153 (258)
T PRK07370 82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVR-------- 153 (258)
T ss_pred HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccccc--------
Confidence 68999999997431 11234557899999999888887764321 123999999965321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
+......|+.+|++.+.+++.++.++ |+++++|.||.|..+-.............+.... +
T Consensus 154 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~--p---------- 217 (258)
T PRK07370 154 ----AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKA--P---------- 217 (258)
T ss_pred ----CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhcC--C----------
Confidence 11345689999999999999999885 7999999999997652210000001111111111 1
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..-+...+|++.++..++...... ..|+++.+.++
T Consensus 218 ~~r~~~~~dva~~~~fl~s~~~~~----------~tG~~i~vdgg 252 (258)
T PRK07370 218 LRRTVTQTEVGNTAAFLLSDLASG----------ITGQTIYVDAG 252 (258)
T ss_pred cCcCCCHHHHHHHHHHHhChhhcc----------ccCcEEEECCc
Confidence 113566799999999998654432 23467777554
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-19 Score=168.08 Aligned_cols=226 Identities=15% Similarity=0.045 Sum_probs=155.2
Q ss_pred CCCCEEEEECCCC--hHHHHHHHHHHhCCCeEEEEECCCCCC-------ChhHHHHHHHhh-hcCCeEEEEcccCCHHHH
Q 013602 97 RNGISVLVTGAAG--FVGTHVSAALKRRGDGVLGLDNFNDYY-------DPSLKKARQALL-ERSGIFIVEGDINDMALL 166 (439)
Q Consensus 97 ~~~~~VlItGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~-------~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~ 166 (439)
+++|+||||||+| +||.+++++|+++|++|++++|+.... ............ ....+.++.+|++|.+++
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 5678999999995 899999999999999999999862211 000000111111 123688999999999998
Q ss_pred HHhhccc-----CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCC
Q 013602 167 KKLFDVV-----SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNA---NPQPAIVWASSSSVYGLNT 234 (439)
Q Consensus 167 ~~~~~~~-----~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~---~~~~~~V~~SS~~v~g~~~ 234 (439)
.++++.. ++|+||||||...... ..++++..+++|+.++.++++++... ...++||++||...++.
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~-- 160 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGP-- 160 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCC--
Confidence 8887763 5899999999753321 22345678999999999999988643 12239999999876541
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecC
Q 013602 235 KVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 235 ~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
......|+.+|++.+.+++.++.++ |++++.++||.+..+.... ..........+
T Consensus 161 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~-----~~~~~~~~~~~------- 218 (256)
T PRK12748 161 ----------MPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE-----ELKHHLVPKFP------- 218 (256)
T ss_pred ----------CCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh-----hHHHhhhccCC-------
Confidence 1235689999999999999988774 8999999999887663321 11111111100
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
...+...+|++.++..++...... ..|+++++.++
T Consensus 219 -----~~~~~~~~~~a~~~~~l~~~~~~~----------~~g~~~~~d~g 253 (256)
T PRK12748 219 -----QGRVGEPVDAARLIAFLVSEEAKW----------ITGQVIHSEGG 253 (256)
T ss_pred -----CCCCcCHHHHHHHHHHHhCccccc----------ccCCEEEecCC
Confidence 011345699999999887654321 22478888664
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-20 Score=174.87 Aligned_cols=165 Identities=21% Similarity=0.243 Sum_probs=131.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
++++|+||||+|+||++++++|+++|++|++++|+.+.. ....+++++++|++|.++++++++.+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~-----------~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARA-----------APIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhc-----------cccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999943211 11247889999999999999998865
Q ss_pred -CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 72 g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~~------------ 138 (270)
T PRK06179 72 GRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGS-GRIINISSVLGFLP------------ 138 (270)
T ss_pred CCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEECCccccCC------------
Confidence 5799999999754322 23445688999999988888875 44553 49999999765431
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCC
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWG 286 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~ 286 (439)
......|+.+|.+.+.+++.++.+ .|+++++++||.+.++..
T Consensus 139 ~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~ 183 (270)
T PRK06179 139 APYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFD 183 (270)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccc
Confidence 123578999999999999998776 499999999999988743
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=166.47 Aligned_cols=220 Identities=18% Similarity=0.122 Sum_probs=155.2
Q ss_pred EEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-CccEEEEc
Q 013602 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SFTHVMHL 181 (439)
Q Consensus 103 lItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~d~Vi~~ 181 (439)
|||||+|+||++++++|+++|++|++++|+.+. ............++.++.+|++|.+++.++++.. ++|+||||
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ 76 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDR----LAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT 76 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence 699999999999999999999999999994321 1111111111346889999999999999999876 46999999
Q ss_pred ccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 013602 182 AAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 182 Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a 257 (439)
||..... .+.++.+..+++|+.++.+++++....+ .++||++||...+.. ..+...|+.+|.+
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~g~iv~~ss~~~~~~------------~~~~~~Y~~sK~a 143 (230)
T PRK07041 77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAP-GGSLTFVSGFAAVRP------------SASGVLQGAINAA 143 (230)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcC-CeEEEEECchhhcCC------------CCcchHHHHHHHH
Confidence 9974432 1234567889999999999999665544 349999999877542 1346789999999
Q ss_pred HHHHHHHHHhHh-CCcEEEEeeccccCCCCCC--CChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHH
Q 013602 258 GEEIAHTYNHIY-GLSLTGLRFFTVYGPWGRP--DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334 (439)
Q Consensus 258 ~E~~~~~~~~~~-gi~~~ilrpg~v~G~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 334 (439)
.+.+++.++.++ ++++++++||.+.++.... ......+........ +. ..+...+|+|++++.++
T Consensus 144 ~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~~~dva~~~~~l~ 211 (230)
T PRK07041 144 LEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERL--PA----------RRVGQPEDVANAILFLA 211 (230)
T ss_pred HHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcC--CC----------CCCcCHHHHHHHHHHHh
Confidence 999999998875 6899999999986653210 000001111111111 11 11346799999999998
Q ss_pred hhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 335 DTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.... ..|+.|++.++.+
T Consensus 212 ~~~~------------~~G~~~~v~gg~~ 228 (230)
T PRK07041 212 ANGF------------TTGSTVLVDGGHA 228 (230)
T ss_pred cCCC------------cCCcEEEeCCCee
Confidence 7432 2348999888754
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=169.72 Aligned_cols=204 Identities=17% Similarity=0.129 Sum_probs=148.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+++|+||||+|+||.+++++|+++|++|++++|+.... .....+. ....++.++.+|++|.+++.++++..
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENL----KAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKN 80 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999953211 1111111 11246889999999999999888754
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... ..++.+..+++|+.++.++++++.. .+ .+++|++||...+..
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~ss~~~~~~---------- 149 (239)
T PRK07666 81 ELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQ-SGDIINISSTAGQKG---------- 149 (239)
T ss_pred HcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CcEEEEEcchhhccC----------
Confidence 5799999999754321 2234467899999999999888753 33 348999999654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|.+.+.+++.++++ .|+++++++||.+.++..... . ... +. ...
T Consensus 150 --~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~------------~--~~~----~~---~~~ 206 (239)
T PRK07666 150 --AAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL------------G--LTD----GN---PDK 206 (239)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc------------c--ccc----cC---CCC
Confidence 134567999999999999988766 489999999999987643210 0 000 01 113
Q ss_pred eeeHHHHHHHHHHHHhhch
Q 013602 320 FTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~ 338 (439)
++..+|+|++++.++....
T Consensus 207 ~~~~~~~a~~~~~~l~~~~ 225 (239)
T PRK07666 207 VMQPEDLAEFIVAQLKLNK 225 (239)
T ss_pred CCCHHHHHHHHHHHHhCCC
Confidence 5778999999999998654
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=171.20 Aligned_cols=229 Identities=16% Similarity=0.148 Sum_probs=155.6
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
++++|+||||||+|+||.+++++|+++|++|++++|+.+. ......... ...++.++.+|++|.+++.++++++
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEK----VDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999994321 111111111 1235788999999999999888775
Q ss_pred ----CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCKNA--NPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~--~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||.... ....+++...+++|+.|+.++++++.+. ...++||++||...+.
T Consensus 82 ~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~------------ 149 (264)
T PRK07576 82 DEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV------------ 149 (264)
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc------------
Confidence 57999999985322 1223455678999999999998887542 1123999999965432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
.......|+.+|.+.+.+++.++.++ |+++++++||.+.+........-.......... ..+ ...+
T Consensus 150 ~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~-~~~----------~~~~ 218 (264)
T PRK07576 150 PMPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQ-SVP----------LKRN 218 (264)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHh-cCC----------CCCC
Confidence 11345789999999999999998774 799999999998753211000000000001111 111 1235
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
...+|+|.+++.++..+... ..|+.+.+.++
T Consensus 219 ~~~~dva~~~~~l~~~~~~~----------~~G~~~~~~gg 249 (264)
T PRK07576 219 GTKQDIANAALFLASDMASY----------ITGVVLPVDGG 249 (264)
T ss_pred CCHHHHHHHHHHHcChhhcC----------ccCCEEEECCC
Confidence 67899999999998754321 23467776665
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=168.29 Aligned_cols=221 Identities=17% Similarity=0.139 Sum_probs=151.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++++|+||||+|+||.+++++|+++|++|++++|+... .....+. .+..++++|++|.++++++++..
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~-----~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEA-----GKAAADE---VGGLFVPTDVTDEDAVNALFDTAAET 76 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHH-----HHHHHHH---cCCcEEEeeCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999983321 1111111 12368899999999999988764
Q ss_pred --CccEEEEcccccCcc------ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCC-cccCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR------YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSS-SVYGLNTKVPFSE 240 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~------~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~-~v~g~~~~~~~~e 240 (439)
++|+||||||..... ...++.+..+++|+.|+.++++.+. +.+. .+||++||. ++++.
T Consensus 77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-g~iv~~sS~~~~~g~-------- 147 (255)
T PRK06057 77 YGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGK-GSIINTASFVAVMGS-------- 147 (255)
T ss_pred cCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCC-cEEEEEcchhhccCC--------
Confidence 679999999975321 1223456789999999877776653 3442 389999985 45542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC--hHHHHHHHHHcCCCCceeecCCCCc
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM--AYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.+.+|...... ........ +. ..+
T Consensus 148 ----~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~-~~--~~~--------- 211 (255)
T PRK06057 148 ----ATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARR-LV--HVP--------- 211 (255)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHH-Hh--cCC---------
Confidence 1235679999999999988876653 899999999999887532110 00000000 00 011
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
...+..++|+++++..++...... ..|+.+.+.++
T Consensus 212 -~~~~~~~~~~a~~~~~l~~~~~~~----------~~g~~~~~~~g 246 (255)
T PRK06057 212 -MGRFAEPEEIAAAVAFLASDDASF----------ITASTFLVDGG 246 (255)
T ss_pred -CCCCcCHHHHHHHHHHHhCccccC----------ccCcEEEECCC
Confidence 114788999999998887654322 23467777654
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=168.25 Aligned_cols=204 Identities=12% Similarity=0.066 Sum_probs=148.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++|+++||||+|+||.+++++|+++|++|++++|+.+. ........ ....++.++.+|++|.+++.++++.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDA----LEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999994321 11111111 11246889999999999988887753
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++.+..+++|+.++.++++.+ ++.+ .++||++||...++.
T Consensus 81 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~----------- 148 (241)
T PRK07454 81 FGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG-GGLIINVSSIAARNA----------- 148 (241)
T ss_pred cCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhCcC-----------
Confidence 579999999974332 123455678999999988877776 3333 249999999877642
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
..+...|+.+|.+.+.+++.++++ .|+++++|+||.+-.+...... ....+ ....+
T Consensus 149 -~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~-------------~~~~~-------~~~~~ 207 (241)
T PRK07454 149 -FPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTET-------------VQADF-------DRSAM 207 (241)
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccccc-------------ccccc-------ccccC
Confidence 134578999999999999888765 4899999999999776422100 00000 00124
Q ss_pred eeHHHHHHHHHHHHhhch
Q 013602 321 TYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~ 338 (439)
+..+|+|++++.++..+.
T Consensus 208 ~~~~~va~~~~~l~~~~~ 225 (241)
T PRK07454 208 LSPEQVAQTILHLAQLPP 225 (241)
T ss_pred CCHHHHHHHHHHHHcCCc
Confidence 788999999999988764
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=168.23 Aligned_cols=165 Identities=18% Similarity=0.107 Sum_probs=131.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-C
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-S 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~ 174 (439)
+.+++|+||||+|+||++++++|+++|+ +|++++|+... ... ...++.++.+|++|.+++.++++.. +
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~-------~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES-------VTD---LGPRVVPLQLDVTDPASVAAAAEAASD 73 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh-------hhh---cCCceEEEEecCCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999 99999984321 111 2357899999999999999999876 4
Q ss_pred ccEEEEcccccC-cc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 175 FTHVMHLAAQAG-VR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 175 ~d~Vi~~Ag~~~-~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
+|+|||+||... .. ...+++...+++|+.++.++++++. +.+ .++||++||...+.. .
T Consensus 74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~~sS~~~~~~------------~ 140 (238)
T PRK08264 74 VTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANG-GGAIVNVLSVLSWVN------------F 140 (238)
T ss_pred CCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcChhhccC------------C
Confidence 799999999722 21 1234456789999999999988865 333 348999999776531 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCC
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGP 284 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~ 284 (439)
.+...|+.+|.+.|.+++.++.++ |+++++++||.+.++
T Consensus 141 ~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~ 182 (238)
T PRK08264 141 PNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTD 182 (238)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccc
Confidence 345789999999999999988764 899999999999776
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=166.09 Aligned_cols=205 Identities=16% Similarity=0.127 Sum_probs=148.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+++|+||||+|+||++++++|+++|++|++++|+.. .............++.++.+|++|.+++.++++..
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQK----ELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHH----HHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998432 11111111111257889999999999999888754
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN--PQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~--~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+|||+||..... ...++++..+++|+.++.++++++.+.. ..++||++||...+.. .
T Consensus 80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~ 147 (237)
T PRK07326 80 FGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNF------------F 147 (237)
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccC------------C
Confidence 679999999875432 1233456789999999999888875421 1248999999765321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.+...|+.+|++.+.+++.+..+ .|+++++||||.+.++...... .. . ....+.
T Consensus 148 ~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~-----------~~---~---------~~~~~~ 204 (237)
T PRK07326 148 AGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTP-----------SE---K---------DAWKIQ 204 (237)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccccc-----------ch---h---------hhccCC
Confidence 34568999999999999998655 4899999999999776332100 00 0 001367
Q ss_pred HHHHHHHHHHHHhhchhc
Q 013602 323 IDDIVKGCLAALDTAEKS 340 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~ 340 (439)
.+|++.+++.++..+...
T Consensus 205 ~~d~a~~~~~~l~~~~~~ 222 (237)
T PRK07326 205 PEDIAQLVLDLLKMPPRT 222 (237)
T ss_pred HHHHHHHHHHHHhCCccc
Confidence 899999999999877643
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=169.49 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=150.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+|+||||+|+||++++++|+++|++|++++|+.+. ........ ....++.++.+|+++.+++.+++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVER----LKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAET 82 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 11111111 11246889999999999999888764
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHh----cC-------CCCeEEEecCCcccCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKN----AN-------PQPAIVWASSSSVYGLNTK 235 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~-------~~~~~V~~SS~~v~g~~~~ 235 (439)
++|+||||||...... +.++++..+++|+.++.++++++.. .. ..+++|++||...+..
T Consensus 83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--- 159 (258)
T PRK06949 83 EAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRV--- 159 (258)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCC---
Confidence 5799999999743321 2344567899999999888887642 21 1238999999776431
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCC
Q 013602 236 VPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 236 ~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|+++....... ......+. . .++.
T Consensus 160 ---------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~-~~~~~~~~-~-~~~~----- 222 (258)
T PRK06949 160 ---------LPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWE-TEQGQKLV-S-MLPR----- 222 (258)
T ss_pred ---------CCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccC-hHHHHHHH-h-cCCC-----
Confidence 1345789999999999999988774 8999999999999885431100 01111111 1 1111
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
..+...+|++.++..++....
T Consensus 223 -----~~~~~p~~~~~~~~~l~~~~~ 243 (258)
T PRK06949 223 -----KRVGKPEDLDGLLLLLAADES 243 (258)
T ss_pred -----CCCcCHHHHHHHHHHHhChhh
Confidence 124557999999999987544
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=169.82 Aligned_cols=227 Identities=11% Similarity=0.072 Sum_probs=154.3
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+.+|++|||||+ ++||.++++.|+++|++|++.+|+.. .... ..+.. .......+++|++|.++++++++..
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~----~~~~-~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 82 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA----LKKR-VEPLAAELGAFVAGHCDVTDEASIDAVFETL 82 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH----HHHH-HHHHHHhcCCceEEecCCCCHHHHHHHHHHH
Confidence 577999999997 89999999999999999999887311 0111 11111 1123567899999999999888764
Q ss_pred -----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|++|||||.... ..+.++++..+++|+.++..+++++.+.- ..++||++||.+...
T Consensus 83 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~-------- 154 (272)
T PRK08159 83 EKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK-------- 154 (272)
T ss_pred HHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc--------
Confidence 58999999997531 12234567899999999999988876432 124999999865321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.......|+.+|++.+.+++.++.++ |+++++|.||.|..+-....... ......... ..+.
T Consensus 155 ----~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~-~~~~~~~~~-~~p~--------- 219 (272)
T PRK08159 155 ----VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDF-RYILKWNEY-NAPL--------- 219 (272)
T ss_pred ----CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcc-hHHHHHHHh-CCcc---------
Confidence 11235689999999999999998874 79999999999876421100000 000000000 1111
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+...+|+|.+++.++...... ..|+++.+.++.
T Consensus 220 -~r~~~peevA~~~~~L~s~~~~~----------itG~~i~vdgG~ 254 (272)
T PRK08159 220 -RRTVTIEEVGDSALYLLSDLSRG----------VTGEVHHVDSGY 254 (272)
T ss_pred -cccCCHHHHHHHHHHHhCccccC----------ccceEEEECCCc
Confidence 12567899999999998754321 334778777664
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-20 Score=171.45 Aligned_cols=210 Identities=16% Similarity=0.157 Sum_probs=144.7
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh---hcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
+++||||+|+||.++++.|+++|++|++++|+... .......... ....+.++.+|++|.+++.++++.+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAA---GLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAM 77 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcch---HHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 38999999999999999999999999999985211 1111111111 1123556889999999998888754
Q ss_pred -CccEEEEcccccCccc----cccChhHHHHHHHH----HHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIA----GLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~----gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||...... ..++....+++|+. ++..+++++++.+. ++||++||...+..
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss~~~~~~------------ 144 (251)
T PRK07069 78 GGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISSVAAFKA------------ 144 (251)
T ss_pred CCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecChhhccC------------
Confidence 5799999999754321 22344577889998 57777787777664 49999999776542
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh-----CCcEEEEeeccccCCCCCCCC---hHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY-----GLSLTGLRFFTVYGPWGRPDM---AYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~-----gi~~~ilrpg~v~G~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
......|+.+|.+.+.+++.++.++ ++++++|+||.+.+|...... ........+.++.+
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------ 212 (251)
T PRK07069 145 EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVP------------ 212 (251)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCC------------
Confidence 1345689999999999999988763 489999999999987532100 00001111111111
Q ss_pred eeeeeeHHHHHHHHHHHHhhch
Q 013602 317 ARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
...+.+++|++.+++.++....
T Consensus 213 ~~~~~~~~~va~~~~~l~~~~~ 234 (251)
T PRK07069 213 LGRLGEPDDVAHAVLYLASDES 234 (251)
T ss_pred CCCCcCHHHHHHHHHHHcCccc
Confidence 1124578999999999876543
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=172.44 Aligned_cols=228 Identities=14% Similarity=0.106 Sum_probs=153.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCC-----CChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDY-----YDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
+++|++|||||+++||.+++++|+++|++|++++|+... ..........+.. ....+.++.+|++|.+++++++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 578999999999999999999999999999999875410 0011111111111 1235788999999999988888
Q ss_pred ccc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cC-----CCCeEEEecCCcccCC
Q 013602 171 DVV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----AN-----PQPAIVWASSSSVYGL 232 (439)
Q Consensus 171 ~~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~-----~~~~~V~~SS~~v~g~ 232 (439)
+.+ ++|+||||||..... ...++++..+++|+.|+.++++++.. .. ...+||++||...+.
T Consensus 84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~- 162 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ- 162 (286)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc-
Confidence 654 689999999975422 23345678999999998888777642 11 113899999965421
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceee
Q 013602 233 NTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 233 ~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~ 309 (439)
.......|+.+|.+.+.+++.++.+ .|+++++|.|| +..+-. ............ .
T Consensus 163 -----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~------~~~~~~~~~~~~--~-- 220 (286)
T PRK07791 163 -----------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMT------ETVFAEMMAKPE--E-- 220 (286)
T ss_pred -----------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcc------hhhHHHHHhcCc--c--
Confidence 1123578999999999999999887 48999999998 432211 011111111110 0
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
....+...+|++.+++.++...... ..|+.+.+.++..
T Consensus 221 ------~~~~~~~pedva~~~~~L~s~~~~~----------itG~~i~vdgG~~ 258 (286)
T PRK07791 221 ------GEFDAMAPENVSPLVVWLGSAESRD----------VTGKVFEVEGGKI 258 (286)
T ss_pred ------cccCCCCHHHHHHHHHHHhCchhcC----------CCCcEEEEcCCce
Confidence 0112456899999999988654321 2347777766543
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-20 Score=173.11 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=129.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+||||||+|+||.+++++|+++|++|++++|+.... ....+.++.+|++|.++++++++..
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~------------~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDG------------QHENYQFVPTDVSSAEEVNHTVAEIIEK 74 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccc------------ccCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999854321 1236788999999999999888764
Q ss_pred --CccEEEEcccccCcc-------------ccccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR-------------YAMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTK 235 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~-------------~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~ 235 (439)
++|+||||||..... .+.++++..+++|+.++.++++++.+.. ...+||++||...+..
T Consensus 75 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~--- 151 (266)
T PRK06171 75 FGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEG--- 151 (266)
T ss_pred cCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCC---
Confidence 679999999974321 1234456789999999999998886432 1238999999765321
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeecccc
Q 013602 236 VPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVY 282 (439)
Q Consensus 236 ~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~ 282 (439)
......|+.+|.+.+.+++.++.++ |+++++|+||.+.
T Consensus 152 ---------~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~ 192 (266)
T PRK06171 152 ---------SEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILE 192 (266)
T ss_pred ---------CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence 1345789999999999999998874 8999999999985
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=168.76 Aligned_cols=227 Identities=11% Similarity=0.026 Sum_probs=152.3
Q ss_pred CCCCEEEEECC--CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGA--AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+.+|+++|||| +++||.+++++|+++|++|++.+|... .... ..+... .....++.+|++|+++++++++..
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 78 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR----FKDR-ITEFAAEFGSDLVFPCDVASDEQIDALFASL 78 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH----HHHH-HHHHHHhcCCcceeeccCCCHHHHHHHHHHH
Confidence 57899999996 679999999999999999999876311 0011 111111 123457899999999999888764
Q ss_pred -----CccEEEEcccccCcc---------ccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR---------YAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~---------~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~ 238 (439)
++|++|||||..... .+.++++..+++|+.++..+.+++...- ..++||++||....-
T Consensus 79 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~------- 151 (260)
T PRK06997 79 GQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER------- 151 (260)
T ss_pred HHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc-------
Confidence 689999999975321 1234556789999999888888775432 124899999865421
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
+......|+.+|++.+.+++.++.++ |++++.|.||.|..+-.............+... .+.
T Consensus 152 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~--~p~-------- 216 (260)
T PRK06997 152 -----VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESN--APL-------- 216 (260)
T ss_pred -----CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhc--Ccc--------
Confidence 11235679999999999999999874 899999999998764211000000111111111 111
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+...+|++.+++.++...... ..|+++.+.++.
T Consensus 217 --~r~~~pedva~~~~~l~s~~~~~----------itG~~i~vdgg~ 251 (260)
T PRK06997 217 --RRNVTIEEVGNVAAFLLSDLASG----------VTGEITHVDSGF 251 (260)
T ss_pred --cccCCHHHHHHHHHHHhCccccC----------cceeEEEEcCCh
Confidence 12567899999999998754321 334778776653
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=168.63 Aligned_cols=225 Identities=16% Similarity=0.122 Sum_probs=149.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
+|+||||||+|+||+.+++.|+++|++|+++++... ........+. ....++.++.+|++|.+++.++++..
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDA---AAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAF 78 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999988764221 1111111111 11246889999999999998887654
Q ss_pred -CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHHhc-C-----CCCeEEEecCCcc-cCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCKNA-N-----PQPAIVWASSSSV-YGLNTKVPFSE 240 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~-----~~~~~V~~SS~~v-~g~~~~~~~~e 240 (439)
++|+||||||..... ...++.+..+++|+.++.++++.+.+. . ...+||++||.+. ++..
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~------- 151 (248)
T PRK06947 79 GRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP------- 151 (248)
T ss_pred CCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC-------
Confidence 579999999975331 123344577999999988887544321 1 1237999999643 3310
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
.....|+.+|.+.+.+++.+++++ |+++++++||.+..|....... ........ ...+.
T Consensus 152 -----~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~--~~~~~---------- 213 (248)
T PRK06947 152 -----NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQ-PGRAARLG--AQTPL---------- 213 (248)
T ss_pred -----CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCC-HHHHHHHh--hcCCC----------
Confidence 123579999999999999998875 8999999999998874321111 11111111 11111
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.-...++|+++.++.++...... ..|+.+.+.++
T Consensus 214 ~~~~~~e~va~~~~~l~~~~~~~----------~~G~~~~~~gg 247 (248)
T PRK06947 214 GRAGEADEVAETIVWLLSDAASY----------VTGALLDVGGG 247 (248)
T ss_pred CCCcCHHHHHHHHHHHcCccccC----------cCCceEeeCCC
Confidence 01356799999999988765421 23467766543
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-19 Score=164.86 Aligned_cols=216 Identities=13% Similarity=0.109 Sum_probs=151.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
+|++|||||+|+||.+++++|+++|++|++++|+... . .+.....++.++.+|++|.++++++++..
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~-----~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 73 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYP---A-----IDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTD 73 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchh---H-----HHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCC
Confidence 4789999999999999999999999999999995431 1 11112235788999999999998888764
Q ss_pred CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cC-CCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----AN-PQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... .+.++.+..+++|+.++..+.+.+.. .+ ...+||++||..... .
T Consensus 74 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~------------~ 141 (236)
T PRK06483 74 GLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK------------G 141 (236)
T ss_pred CccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc------------C
Confidence 489999999974322 12445678999999998777666543 22 123899999865321 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
......|+.+|.+.+.+++.++.++ ++++++|+||.+..+..... ..........+... +..
T Consensus 142 ~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~~----~~~~~~~~~~~~~~------------~~~ 205 (236)
T PRK06483 142 SDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGDDA----AYRQKALAKSLLKI------------EPG 205 (236)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCCCH----HHHHHHhccCcccc------------CCC
Confidence 1235689999999999999999986 59999999999753322111 11122222222211 235
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+|++.++..++.... ..|+++.+.++.
T Consensus 206 ~~~va~~~~~l~~~~~------------~~G~~i~vdgg~ 233 (236)
T PRK06483 206 EEEIIDLVDYLLTSCY------------VTGRSLPVDGGR 233 (236)
T ss_pred HHHHHHHHHHHhcCCC------------cCCcEEEeCccc
Confidence 7999999999986221 234788876653
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=168.37 Aligned_cols=225 Identities=18% Similarity=0.194 Sum_probs=149.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----C
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-----S 174 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 174 (439)
|+||||||+|+||++++++|+++|++|++++|+.+. ......+.....++.++++|++|.++++++++.+ +
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEEN----LEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 589999999999999999999999999999984321 1111111112246889999999999999888754 6
Q ss_pred ccEEEEcccccCcc---c---cccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 175 FTHVMHLAAQAGVR---Y---AMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~---~---~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
+|+||||||..... . ..++....+++|+.++..+... ..+....++||++||...+. +
T Consensus 77 id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~------------~ 144 (259)
T PRK08340 77 IDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE------------P 144 (259)
T ss_pred CCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC------------C
Confidence 89999999974321 1 1223345678888876554443 32222234999999977532 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC---------hHHH-HHHHHHcCCCCceeecC
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM---------AYFF-FTRDILNRKSIPIFESP 311 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~---------~~~~-~~~~~~~g~~~~~~~~~ 311 (439)
..+...|+.+|.+.+.+++.++.++ |++++.|.||.+-.+...... .... ....+... .+
T Consensus 145 ~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p----- 217 (259)
T PRK08340 145 MPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLER--TP----- 217 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhcc--CC-----
Confidence 1345789999999999999999985 799999999998776421000 0000 00111111 11
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..-+...+|+|++++.++...... ..|++..+.++.
T Consensus 218 -----~~r~~~p~dva~~~~fL~s~~~~~----------itG~~i~vdgg~ 253 (259)
T PRK08340 218 -----LKRTGRWEELGSLIAFLLSENAEY----------MLGSTIVFDGAM 253 (259)
T ss_pred -----ccCCCCHHHHHHHHHHHcCccccc----------ccCceEeecCCc
Confidence 112567899999999998754432 334677776653
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-19 Score=165.67 Aligned_cols=225 Identities=14% Similarity=0.098 Sum_probs=156.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEE-ECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGL-DNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+.+|++|||||+|+||.++++.|+++|++|+++ +|+.+. ........ ....++.++.+|++|.+++.++++..
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEA----AQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIV 78 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHH----HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 773321 11111111 11346889999999999998888754
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+|||+||..... .+.++.+..+++|+.++.++++++.. .+ .++||++||...+..
T Consensus 79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~~sS~~~~~~--------- 148 (247)
T PRK05565 79 EKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRK-SGVIVNISSIWGLIG--------- 148 (247)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECCHhhccC---------
Confidence 579999999975322 12344567899999998888877753 33 238999999654321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
......|+.+|.+.+.+++.++.+. |+++++++||.+.++...... ......... .. ...
T Consensus 149 ---~~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~--~~~~~~~~~-----~~-------~~~ 211 (247)
T PRK05565 149 ---ASCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFS--EEDKEGLAE-----EI-------PLG 211 (247)
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccC--hHHHHHHHh-----cC-------CCC
Confidence 1235689999999999999887764 899999999999776433111 111111111 00 112
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+...+|++.+++.++...... ..|+.+++.++.
T Consensus 212 ~~~~~~~va~~~~~l~~~~~~~----------~~g~~~~~~~~~ 245 (247)
T PRK05565 212 RLGKPEEIAKVVLFLASDDASY----------ITGQIITVDGGW 245 (247)
T ss_pred CCCCHHHHHHHHHHHcCCccCC----------ccCcEEEecCCc
Confidence 3567899999999998765432 345888887653
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=168.47 Aligned_cols=201 Identities=15% Similarity=0.085 Sum_probs=145.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--Ccc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--SFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d 176 (439)
+|+|+||||+|+||.+++++|+++|++|++++|+.+....... ........++.++++|++|.++++++++++ .+|
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLAD--DLRARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH--HHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 4789999999999999999999999999999995431111000 001112347899999999999999988765 469
Q ss_pred EEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCC
Q 013602 177 HVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPA 248 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~ 248 (439)
+||||||...... ..+++...+++|+.++.++++++.. .+ .++||++||..... .....
T Consensus 79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~------------~~~~~ 145 (243)
T PRK07102 79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARG-SGTIVGISSVAGDR------------GRASN 145 (243)
T ss_pred EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC-CCEEEEEecccccC------------CCCCC
Confidence 9999999754321 2233456899999999999888754 33 34999999964321 11234
Q ss_pred ChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHH
Q 013602 249 SLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDD 325 (439)
Q Consensus 249 ~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~D 325 (439)
..|+.+|.+.+.+++.++.++ |+++++++||.|+++... +...+. .-.+.++|
T Consensus 146 ~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~--------------~~~~~~----------~~~~~~~~ 201 (243)
T PRK07102 146 YVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTA--------------GLKLPG----------PLTAQPEE 201 (243)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhh--------------ccCCCc----------cccCCHHH
Confidence 679999999999999987763 899999999999886221 101000 11456899
Q ss_pred HHHHHHHHHhhch
Q 013602 326 IVKGCLAALDTAE 338 (439)
Q Consensus 326 va~a~~~~l~~~~ 338 (439)
++++++.+++...
T Consensus 202 ~a~~i~~~~~~~~ 214 (243)
T PRK07102 202 VAKDIFRAIEKGK 214 (243)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999888543
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-19 Score=167.40 Aligned_cols=204 Identities=17% Similarity=0.127 Sum_probs=144.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
+|++|||||+|+||++++++|+++|++|++++|+.+ ..+..........+.++++|++|.+++.++++.+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEA-----GLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH-----HHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999998432 1111111122357899999999999998887743
Q ss_pred -CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCc-ccCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSS-VYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~-v~g~~~~~~~~e~~~ 243 (439)
++|+||||||...... +.++.+..+++|+.++.++++++.+ .+ ..+||++||.. +++.
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~----------- 143 (260)
T PRK08267 76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATP-GARVINTSSASAIYGQ----------- 143 (260)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEeCchhhCcCC-----------
Confidence 5799999999754322 2344568899999999999888743 33 23999999954 4431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
.....|+.+|.+.+.+++.++.++ ++++++|+||.+..+....... ......... ..-.
T Consensus 144 --~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~--~~~~~~~~~--------------~~~~ 205 (260)
T PRK08267 144 --PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSN--EVDAGSTKR--------------LGVR 205 (260)
T ss_pred --CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccc--hhhhhhHhh--------------ccCC
Confidence 235689999999999999998763 7999999999987653221000 000000000 0113
Q ss_pred eeHHHHHHHHHHHHhhc
Q 013602 321 TYIDDIVKGCLAALDTA 337 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~ 337 (439)
+..+|++.+++.+++..
T Consensus 206 ~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 206 LTPEDVAEAVWAAVQHP 222 (260)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 55799999999998644
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-19 Score=168.83 Aligned_cols=211 Identities=14% Similarity=0.157 Sum_probs=148.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChh---HHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS---LKKARQAL-LERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+.+|+++||||+|+||++++++|+++|++|++++|+.+..... ......+. ....++.++.+|++|.+++.++++.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 5778999999999999999999999999999999965432111 11111111 1124688999999999999988876
Q ss_pred c-----CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNA---NPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~---~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
. ++|+||||||...... +.++++..+++|+.++.++++++... ....+||++||.....
T Consensus 84 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~--------- 154 (273)
T PRK08278 84 AVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD--------- 154 (273)
T ss_pred HHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc---------
Confidence 5 6899999999754322 23445678999999999999988632 1123899999854211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeecc-ccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFT-VYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~-v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.....+...|+.+|.+.|.+++.++.++ ++++++|+||. +..+. ..... +... .
T Consensus 155 -~~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~----------~~~~~-~~~~----------~ 212 (273)
T PRK08278 155 -PKWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAA----------VRNLL-GGDE----------A 212 (273)
T ss_pred -ccccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHH----------HHhcc-cccc----------c
Confidence 0001346799999999999999998885 89999999984 43321 11111 1111 1
Q ss_pred eeeeeeHHHHHHHHHHHHhhch
Q 013602 317 ARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
...+...+|+|++++.++....
T Consensus 213 ~~~~~~p~~va~~~~~l~~~~~ 234 (273)
T PRK08278 213 MRRSRTPEIMADAAYEILSRPA 234 (273)
T ss_pred ccccCCHHHHHHHHHHHhcCcc
Confidence 1135678999999999987654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=173.62 Aligned_cols=202 Identities=19% Similarity=0.216 Sum_probs=145.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+|+||||+|+||.+++++|+++|++|++++|+.+. ......+.. ....+.++.+|++|.+++.++++.+
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~----l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 113 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDL----LDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEK 113 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999994321 111111111 1235788999999999999988843
Q ss_pred ---CccEEEEcccccCcccc------ccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRYA------MQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~~------~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||....... .++.+..+++|+.|+.++++++. +.+. ++||++||.+.+..
T Consensus 114 ~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~-------- 184 (293)
T PRK05866 114 RIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGD-GHIINVATWGVLSE-------- 184 (293)
T ss_pred HcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cEEEEECChhhcCC--------
Confidence 67999999997543221 12345789999999888777653 4443 49999999765431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
.......|+.+|++.+.+++.++.++ |+++++++||.|-++.... ...+ .+
T Consensus 185 ---~~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~----------------~~~~----~~--- 238 (293)
T PRK05866 185 ---ASPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAP----------------TKAY----DG--- 238 (293)
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccc----------------cccc----cC---
Confidence 01235689999999999999998874 8999999999887653210 0000 00
Q ss_pred eeeeeHHHHHHHHHHHHhhc
Q 013602 318 RDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~ 337 (439)
...+..+++|+.++.+++..
T Consensus 239 ~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 239 LPALTADEAAEWMVTAARTR 258 (293)
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 11357899999999998753
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=184.90 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=158.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
..+|++|||||+|+||.+++++|+++|++|++++|+.+ .... ..+.. ...+..+.+|++|+++++++++..
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~----~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 340 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAE----GAKK-LAEAL-GDEHLSVQADITDEAAVESAFAQIQAR 340 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHH-HHHHh-CCceeEEEccCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998432 1111 11111 245678999999999999888764
Q ss_pred --CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++.... ...+||++||...+. ..
T Consensus 341 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~ 408 (520)
T PRK06484 341 WGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL------------AL 408 (520)
T ss_pred cCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC------------CC
Confidence 58999999997522 12334567889999999999998876542 123999999976532 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC-hHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM-AYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
.+...|+.+|++.+.+++.++.++ |+++++|+||.|.++...... .-......+.+..+. ..+.
T Consensus 409 ~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 476 (520)
T PRK06484 409 PPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIPL------------GRLG 476 (520)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCCC------------CCCc
Confidence 346789999999999999998875 899999999999877422100 000111112221111 1246
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.++|+|++++.++...... ..|+++.+.++
T Consensus 477 ~~~dia~~~~~l~s~~~~~----------~~G~~i~vdgg 506 (520)
T PRK06484 477 DPEEVAEAIAFLASPAASY----------VNGATLTVDGG 506 (520)
T ss_pred CHHHHHHHHHHHhCccccC----------ccCcEEEECCC
Confidence 7899999999998654321 33478887665
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-19 Score=166.15 Aligned_cols=227 Identities=15% Similarity=0.105 Sum_probs=151.7
Q ss_pred CCCCEEEEECC--CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGA--AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+.+|+++|||| +++||.+++++|+++|++|++.+|+... ...... .... ...+.++.+|++|.++++++++.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~--~~~~~~-~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRAL--RLTERI-AKRL-PEPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccch--hHHHHH-HHhc-CCCCcEEeCCCCCHHHHHHHHHHHH
Confidence 56799999999 8999999999999999999999884310 111111 1111 235778999999999999888654
Q ss_pred ----CccEEEEcccccCc-----cc---cccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV-----RY---AMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~-----~~---~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|++|||||.... .. ..++....+++|+.++..+.+++...- ...+||++|+....
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~---------- 150 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV---------- 150 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc----------
Confidence 58999999997532 11 223445679999999888877765321 12389998864321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
.......|+.||++.+.+++.++.++ |+++++|.||.|..+..............+.+. .+. .
T Consensus 151 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~--~p~---------~ 216 (256)
T PRK07889 151 ---AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDER--APL---------G 216 (256)
T ss_pred ---cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhc--Ccc---------c
Confidence 11234679999999999999998874 899999999999775321000000111111111 111 0
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+.+...+|+|.+++.++...... ..|+++.+.++
T Consensus 217 ~~~~~p~evA~~v~~l~s~~~~~----------~tG~~i~vdgg 250 (256)
T PRK07889 217 WDVKDPTPVARAVVALLSDWFPA----------TTGEIVHVDGG 250 (256)
T ss_pred cccCCHHHHHHHHHHHhCccccc----------ccceEEEEcCc
Confidence 12567899999999998754421 23367776554
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=188.62 Aligned_cols=238 Identities=16% Similarity=0.140 Sum_probs=157.9
Q ss_pred cccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh---hcCCeEEEEcccCCHHHHHHhh
Q 013602 94 VRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 94 ~~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
+..+.+|+||||||+|+||++++++|+++|++|++++|+.+. ......... ....+..+.+|++|.+++.+++
T Consensus 409 ~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~----~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~ 484 (676)
T TIGR02632 409 EKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEA----AEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAF 484 (676)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHH----HHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHH
Confidence 345678999999999999999999999999999999984321 111111111 2235778999999999999988
Q ss_pred ccc-----CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcc-cCCCCCC
Q 013602 171 DVV-----SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSV-YGLNTKV 236 (439)
Q Consensus 171 ~~~-----~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v-~g~~~~~ 236 (439)
+++ ++|+||||||...... ..++....+++|+.+..++.+.+ ++.+...+||++||... ++
T Consensus 485 ~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~----- 559 (676)
T TIGR02632 485 ADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYA----- 559 (676)
T ss_pred HHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCC-----
Confidence 865 6799999999754321 22345578899999976665443 44443348999999543 32
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeecccc-CCCCCCCChHHHHHHHHHcCCCC----cee
Q 013602 237 PFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVY-GPWGRPDMAYFFFTRDILNRKSI----PIF 308 (439)
Q Consensus 237 ~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~-G~~~~~~~~~~~~~~~~~~g~~~----~~~ 308 (439)
......|+.+|.+.+.+++.++.++ |+++++|+||.|+ |.+....... .......+... ..+
T Consensus 560 --------~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~--~~~~~~~~~~~~~~~~~~ 629 (676)
T TIGR02632 560 --------GKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWR--EERAAAYGIPADELEEHY 629 (676)
T ss_pred --------CCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccch--hhhhhcccCChHHHHHHH
Confidence 1245789999999999999998874 7999999999987 3321100000 00000001000 001
Q ss_pred ecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 309 ESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 309 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
........+++.+|+|++++.++...... ..|+++++.+|..
T Consensus 630 ---~~r~~l~r~v~peDVA~av~~L~s~~~~~----------~TG~~i~vDGG~~ 671 (676)
T TIGR02632 630 ---AKRTLLKRHIFPADIAEAVFFLASSKSEK----------TTGCIITVDGGVP 671 (676)
T ss_pred ---HhcCCcCCCcCHHHHHHHHHHHhCCcccC----------CcCcEEEECCCch
Confidence 01122234688999999999887643321 2348898877654
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=165.42 Aligned_cols=226 Identities=15% Similarity=0.116 Sum_probs=156.4
Q ss_pred CCCCEEEEECCCC-hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh---hhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAG-FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL---LERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG-~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+.+|+++||||+| +||.++++.|+++|++|++.+|+... ......+. .....+.++++|++|.+++.++++.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 90 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERR----LGETADELAAELGLGRVEAVVCDVTSEAQVDALIDA 90 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 5679999999997 89999999999999999999884321 11111111 1123688899999999999988875
Q ss_pred c-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
+ ++|+||||||..... .+.+++...+++|+.++..+++++.+ .+...+||++||...+.
T Consensus 91 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~-------- 162 (262)
T PRK07831 91 AVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR-------- 162 (262)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC--------
Confidence 4 679999999974322 12344567889999998888777643 22123899998865321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
...+...|+.+|++.+.+++.++.+ +|+++++|+||.++.|...... .......+....+.
T Consensus 163 ----~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~-~~~~~~~~~~~~~~----------- 226 (262)
T PRK07831 163 ----AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT-SAELLDELAAREAF----------- 226 (262)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc-CHHHHHHHHhcCCC-----------
Confidence 1134578999999999999999887 4899999999999987532111 11222222222211
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.-+...+|+|++++.++...... ..|+++.+.++
T Consensus 227 -~r~~~p~~va~~~~~l~s~~~~~----------itG~~i~v~~~ 260 (262)
T PRK07831 227 -GRAAEPWEVANVIAFLASDYSSY----------LTGEVVSVSSQ 260 (262)
T ss_pred -CCCcCHHHHHHHHHHHcCchhcC----------cCCceEEeCCC
Confidence 12456799999999988755422 23477777653
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=164.04 Aligned_cols=213 Identities=15% Similarity=0.070 Sum_probs=146.6
Q ss_pred cCCCCEEEEECCCC--hHHHHHHHHHHhCCCeEEEEECCCCCC------ChhHHHHHHHhh--hcCCeEEEEcccCCHHH
Q 013602 96 ARNGISVLVTGAAG--FVGTHVSAALKRRGDGVLGLDNFNDYY------DPSLKKARQALL--ERSGIFIVEGDINDMAL 165 (439)
Q Consensus 96 ~~~~~~VlItGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~------~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~ 165 (439)
.+++|+||||||+| +||.+++++|+++|++|++.+|..... .........+.. ....+.++++|++|.++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA 82 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 36789999999994 899999999999999999987532111 011111111111 12367889999999999
Q ss_pred HHHhhccc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCC
Q 013602 166 LKKLFDVV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGL 232 (439)
Q Consensus 166 ~~~~~~~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~ 232 (439)
+.++++.. ++|+||||||..... .+.++.+..+++|+.+...+.+.+ ++.+ .++||++||.....
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~- 160 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKS-GGRIINMTSGQFQG- 160 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEEcccccCC-
Confidence 99888754 479999999974332 223445678999999977775444 3333 23999999976432
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceee
Q 013602 233 NTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 233 ~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~ 309 (439)
+..+...|+.+|++.+.++++++.+ .|++++.|+||.+..+.... .+...+....+.
T Consensus 161 -----------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~-----~~~~~~~~~~~~---- 220 (256)
T PRK12859 161 -----------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE-----EIKQGLLPMFPF---- 220 (256)
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH-----HHHHHHHhcCCC----
Confidence 1235679999999999999999887 48999999999987653221 111112211111
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
..+...+|+|++++.++....
T Consensus 221 --------~~~~~~~d~a~~~~~l~s~~~ 241 (256)
T PRK12859 221 --------GRIGEPKDAARLIKFLASEEA 241 (256)
T ss_pred --------CCCcCHHHHHHHHHHHhCccc
Confidence 113457999999999876543
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-19 Score=167.28 Aligned_cols=200 Identities=17% Similarity=0.106 Sum_probs=141.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.+++|+||||+|+||++++++|+++| ++|++++|+.+.. ......+. ....+++++.+|++|.++++++++..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~---~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPR---RDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchh---HHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence 46899999999999999999999995 9999999965421 11111111 12236899999999999877666543
Q ss_pred ---CccEEEEcccccCcc-ccccCh---hHHHHHHHHHHHH----HHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR-YAMQNP---NSYVHSNIAGLVS----LLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~-~~~~~~---~~~~~~Nv~gt~~----ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|++|||+|..... ....+. ...+++|+.++.. +++++++.+. ++||++||...+..
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS~~g~~~---------- 152 (253)
T PRK07904 84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSSVAGERV---------- 152 (253)
T ss_pred hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEechhhcCC----------
Confidence 689999999975321 111122 2468999999765 5666666664 49999999754211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.||++...+.+.++.+ +|+++++++||.|..+... ..... ..
T Consensus 153 --~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~-------------~~~~~------------~~ 205 (253)
T PRK07904 153 --RRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSA-------------HAKEA------------PL 205 (253)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhc-------------cCCCC------------CC
Confidence 123467999999999998888765 4899999999999875221 00000 01
Q ss_pred eeeHHHHHHHHHHHHhhch
Q 013602 320 FTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~ 338 (439)
.+..+|+|+.++.+++...
T Consensus 206 ~~~~~~~A~~i~~~~~~~~ 224 (253)
T PRK07904 206 TVDKEDVAKLAVTAVAKGK 224 (253)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 3678999999999987654
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=169.13 Aligned_cols=204 Identities=22% Similarity=0.161 Sum_probs=144.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc------
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV------ 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~------ 173 (439)
|+|+||||+|+||.++++.|+++|++|++++|+.+. .+.....++.++.+|++|.+++.++++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~---------~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 73 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDD---------VARMNSLGFTGILLDLDDPESVERAADEVIALTDN 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH---------hHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999984321 11112236888999999999887776553
Q ss_pred CccEEEEcccccCccc----cccChhHHHHHHHHHHHHH----HHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSL----LEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~l----l~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
.+|.+|||||...... +.++++..+++|+.|+.++ ++.+++.+. ++||++||...+.. .
T Consensus 74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~~iv~~ss~~~~~~------------~ 140 (256)
T PRK08017 74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGE-GRIVMTSSVMGLIS------------T 140 (256)
T ss_pred CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-CEEEEEcCcccccC------------C
Confidence 4699999999643221 2334567899999997775 555566654 39999999643211 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCC-CCceeecCCCCcceeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRK-SIPIFESPDHGTVARDFT 321 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~i 321 (439)
.....|+.+|++.|.+.+.++.+ .++++++++||.+..+.. ..+.... ..+.. ..+...+.++
T Consensus 141 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~----------~~~~~~~~~~~~~---~~~~~~~~~~ 207 (256)
T PRK08017 141 PGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFT----------DNVNQTQSDKPVE---NPGIAARFTL 207 (256)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchh----------hcccchhhccchh---hhHHHhhcCC
Confidence 34578999999999998876554 489999999988765421 1111111 11111 1122335689
Q ss_pred eHHHHHHHHHHHHhhch
Q 013602 322 YIDDIVKGCLAALDTAE 338 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~ 338 (439)
+++|+++++..+++...
T Consensus 208 ~~~d~a~~~~~~~~~~~ 224 (256)
T PRK08017 208 GPEAVVPKLRHALESPK 224 (256)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 99999999999987655
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-19 Score=164.72 Aligned_cols=197 Identities=15% Similarity=0.160 Sum_probs=144.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh---hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL---LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+|+|+||||+|+||.+++++|+++|++|++++|+... ........ .....+.++++|++|.+++.+++++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDR----LEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRD 77 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999994321 11111111 11346889999999999998888754
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcc-cCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSV-YGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v-~g~~~~~~~~e~ 241 (439)
++|+||||||+..... ..+..+..+++|+.++.++++++. +.+. ++||++||... ++.
T Consensus 78 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~~~--------- 147 (248)
T PRK08251 78 ELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGS-GHLVLISSVSAVRGL--------- 147 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEeccccccCC---------
Confidence 5899999999754321 123345689999999888888764 4443 48999999654 321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
+ .+...|+.+|.+.+.+++.++.++ ++++++++||.+.++.... .+. . .
T Consensus 148 --~-~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~------------~~~--~-----------~ 199 (248)
T PRK08251 148 --P-GVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK------------AKS--T-----------P 199 (248)
T ss_pred --C-CCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc------------ccc--C-----------C
Confidence 1 235789999999999999988774 7999999999998763210 000 0 1
Q ss_pred eeeeHHHHHHHHHHHHhhc
Q 013602 319 DFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~ 337 (439)
..+..+|.|++++.+++..
T Consensus 200 ~~~~~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 200 FMVDTETGVKALVKAIEKE 218 (248)
T ss_pred ccCCHHHHHHHHHHHHhcC
Confidence 2467899999999998753
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=171.23 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=128.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
+|+||||||+|+||+++++.|+++|++|++++|+.. ..+.....++.++.+|++|.++++++++.+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~---------~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 71 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAE---------DVEALAAAGFTAVQLDVNDGAALARLAEELEAEHG 71 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 378999999999999999999999999999998321 111122346788999999999998888765
Q ss_pred CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh---cCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN---ANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~---~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~ 246 (439)
++|+||||||..... .+.++.+..+++|+.|+.++++++.. .+ .++||++||...+.. ..
T Consensus 72 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~------------~~ 138 (274)
T PRK05693 72 GLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRS-RGLVVNIGSVSGVLV------------TP 138 (274)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc-CCEEEEECCccccCC------------CC
Confidence 689999999975432 12345567899999999888888743 22 238999999654321 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCC
Q 013602 247 PASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPW 285 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~ 285 (439)
....|+.+|.+.+.+++.++.+ +|+++++++||.|.++.
T Consensus 139 ~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~ 180 (274)
T PRK05693 139 FAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF 180 (274)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence 3578999999999999988876 58999999999998763
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=163.94 Aligned_cols=216 Identities=17% Similarity=0.131 Sum_probs=145.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
|+++||||+|+||.+++++|+++|++|++++|+.. .......... ....+.++.+|++|++++.++++..
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~ 76 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEE----TAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFG 76 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 57999999999999999999999999999998421 1111111111 1245889999999999998887654
Q ss_pred CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcc-cCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSV-YGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v-~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... .+.++.+..+++|+.++..+++++. +.+..++||++||... ++.
T Consensus 77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------ 144 (254)
T TIGR02415 77 GFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGN------------ 144 (254)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCC------------
Confidence 579999999975332 2234456789999999887766654 3332349999999543 321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCce---eecCCCCccee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPI---FESPDHGTVAR 318 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~ 318 (439)
...+.|+.+|++.+.+++.+++++ ++++++|+||.+.++... .+.....+....+. +..........
T Consensus 145 -~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (254)
T TIGR02415 145 -PILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWE------EIDEETSEIAGKPIGEGFEEFSSEIALG 217 (254)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhh------hhhhhhhhcccCchHHHHHHHHhhCCCC
Confidence 246789999999999999988875 799999999998765321 01100000000000 00000000112
Q ss_pred eeeeHHHHHHHHHHHHhhch
Q 013602 319 DFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~ 338 (439)
.+..++|++.++..++....
T Consensus 218 ~~~~~~~~a~~~~~l~~~~~ 237 (254)
T TIGR02415 218 RPSEPEDVAGLVSFLASEDS 237 (254)
T ss_pred CCCCHHHHHHHHHhhccccc
Confidence 36788999999999988765
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-19 Score=170.15 Aligned_cols=168 Identities=19% Similarity=0.144 Sum_probs=126.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+++||||+|+||.+++++|+++|++|++.++.... .......+.. ...++.++.+|++|.+++.++++.+
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~---~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASAL---DASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchh---HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999874321 1111111111 1246889999999999998887653
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc--------C--CCCeEEEecCCcccCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA--------N--PQPAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~--------~--~~~~~V~~SS~~v~g~~~~~~ 237 (439)
++|+||||||..... .+.+++...+++|+.|+.++++++... + ...+||++||...+..
T Consensus 87 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----- 161 (306)
T PRK07792 87 LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVG----- 161 (306)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccC-----
Confidence 579999999985432 234456788999999999998876421 1 1138999999664321
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeec
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFF 279 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg 279 (439)
......|+.+|.+.+.+++.++.+ +|+++++|.||
T Consensus 162 -------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg 199 (306)
T PRK07792 162 -------PVGQANYGAAKAGITALTLSAARALGRYGVRANAICPR 199 (306)
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC
Confidence 123568999999999999998886 48999999997
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=161.08 Aligned_cols=223 Identities=13% Similarity=0.066 Sum_probs=152.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
|++|||||+|+||++++++|+++|++|+++.|... ........+. ....++.++.+|++|.+++.++++..
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNE---ERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELG 77 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999988211 1111111111 12346889999999999998887653
Q ss_pred CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||.... ....+++...+++|+.++..+++.+ ++.+. ++||++||..... ..
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~iss~~~~~------------~~ 144 (242)
T TIGR01829 78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGW-GRIINISSVNGQK------------GQ 144 (242)
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhcC------------CC
Confidence 57999999997432 1223455678899999977755544 44443 4999999964321 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.....|+.+|.+.+.+++.+++++ |+++++++||.+.++.... ....+...+....+... +..
T Consensus 145 ~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~--~~~~~~~~~~~~~~~~~------------~~~ 210 (242)
T TIGR01829 145 FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMA--MREDVLNSIVAQIPVGR------------LGR 210 (242)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccc--cchHHHHHHHhcCCCCC------------CcC
Confidence 245689999999999999987763 8999999999998875431 11222222332222211 345
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+|++.++..++...... ..|+.+.+.++.
T Consensus 211 ~~~~a~~~~~l~~~~~~~----------~~G~~~~~~gg~ 240 (242)
T TIGR01829 211 PEEIAAAVAFLASEEAGY----------ITGATLSINGGL 240 (242)
T ss_pred HHHHHHHHHHHcCchhcC----------ccCCEEEecCCc
Confidence 689999998877554321 234788887763
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=165.77 Aligned_cols=225 Identities=14% Similarity=0.103 Sum_probs=147.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHH----HHhhcc-
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALL----KKLFDV- 172 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~----~~~~~~- 172 (439)
++++||||+|+||.+++++|+++|++|++++|.... .......+.. ....+.++.+|++|.+++ +++++.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~ 78 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAA---AASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDAC 78 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHH---HHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHH
Confidence 479999999999999999999999999998763211 1111111111 123567789999998755 333332
Q ss_pred ---c-CccEEEEcccccCcccc----cc-----------ChhHHHHHHHHHHHHHHHHHHhcC---------CCCeEEEe
Q 013602 173 ---V-SFTHVMHLAAQAGVRYA----MQ-----------NPNSYVHSNIAGLVSLLEVCKNAN---------PQPAIVWA 224 (439)
Q Consensus 173 ---~-~~d~Vi~~Ag~~~~~~~----~~-----------~~~~~~~~Nv~gt~~ll~~~~~~~---------~~~~~V~~ 224 (439)
. ++|+||||||....... .. +....+++|+.++..+++++.+.. ...+||++
T Consensus 79 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~ 158 (267)
T TIGR02685 79 FRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNL 158 (267)
T ss_pred HHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEe
Confidence 1 57999999997432111 11 245779999999988888764321 11368888
Q ss_pred cCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHc
Q 013602 225 SSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILN 301 (439)
Q Consensus 225 SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~ 301 (439)
||..... +..+...|+.+|++.+.+++.++.+ .|+++++|+||.+..|...+. ........
T Consensus 159 ~s~~~~~------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~~----~~~~~~~~ 222 (267)
T TIGR02685 159 CDAMTDQ------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMPF----EVQEDYRR 222 (267)
T ss_pred hhhhccC------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccch----hHHHHHHH
Confidence 8754321 1134678999999999999999887 489999999999876633211 11111111
Q ss_pred CCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 302 RKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 302 g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
. .+. . ......+|++.+++.++...... ..|+.+.+.++...
T Consensus 223 ~--~~~-----~----~~~~~~~~va~~~~~l~~~~~~~----------~~G~~~~v~gg~~~ 264 (267)
T TIGR02685 223 K--VPL-----G----QREASAEQIADVVIFLVSPKAKY----------ITGTCIKVDGGLSL 264 (267)
T ss_pred h--CCC-----C----cCCCCHHHHHHHHHHHhCcccCC----------cccceEEECCceec
Confidence 1 111 0 11356799999999988654321 34477777666433
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-19 Score=163.18 Aligned_cols=202 Identities=13% Similarity=0.075 Sum_probs=141.6
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCC--HHHHHHhhc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDIND--MALLKKLFD 171 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d--~~~~~~~~~ 171 (439)
.+++|+|+||||+|+||.+++++|+++|++|++++|+.... .....+. .....+.++.+|++| .+++.++++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKL----EKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAA 78 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHH----HHHHHHHHHcCCCCcceEEeeecccchHHHHHHHH
Confidence 46789999999999999999999999999999999954311 1111111 112356788999976 445555443
Q ss_pred c------cCccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCC
Q 013602 172 V------VSFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKV 236 (439)
Q Consensus 172 ~------~~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~ 236 (439)
. -++|+||||||.... ....+++...+++|+.|+.++++++.+ .+ ..++|++||....-
T Consensus 79 ~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~ss~~~~~----- 152 (239)
T PRK08703 79 TIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSP-DASVIFVGESHGET----- 152 (239)
T ss_pred HHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC-CCEEEEEecccccc-----
Confidence 2 157999999996432 112334556899999998888887743 33 34999999854321
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCC
Q 013602 237 PFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 237 ~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
+......|+.+|++.+.+++.++.++ ++++++|+||.|++|..... ..+
T Consensus 153 -------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~----------~~~---------- 205 (239)
T PRK08703 153 -------PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKS----------HPG---------- 205 (239)
T ss_pred -------CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCcccccc----------CCC----------
Confidence 11235689999999999999998875 59999999999998843200 001
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhh
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
.....+...+|++.++..++..
T Consensus 206 --~~~~~~~~~~~~~~~~~~~~~~ 227 (239)
T PRK08703 206 --EAKSERKSYGDVLPAFVWWASA 227 (239)
T ss_pred --CCccccCCHHHHHHHHHHHhCc
Confidence 0111346789999999999874
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-19 Score=163.23 Aligned_cols=229 Identities=22% Similarity=0.196 Sum_probs=158.9
Q ss_pred EEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEEc
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHL 181 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~~ 181 (439)
|+|+||||.+|+.+++.|++.+++|+++.|+. .......+...+++++.+|+.|.+++.++++++ |.||.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-------~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~--d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDP-------SSDRAQQLQALGAEVVEADYDDPESLVAALKGV--DAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSS-------HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTC--SEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEecc-------chhhhhhhhcccceEeecccCCHHHHHHHHcCC--ceEEee
Confidence 79999999999999999999999999999944 222333344568899999999999999999999 999988
Q ss_pred ccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 013602 182 AAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEI 261 (439)
Q Consensus 182 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~ 261 (439)
.+... ........+++++|+++|. ++||+.|....+. +.. ...|....-..|...|.+
T Consensus 72 ~~~~~------------~~~~~~~~~li~Aa~~agV-k~~v~ss~~~~~~--------~~~-~~~p~~~~~~~k~~ie~~ 129 (233)
T PF05368_consen 72 TPPSH------------PSELEQQKNLIDAAKAAGV-KHFVPSSFGADYD--------ESS-GSEPEIPHFDQKAEIEEY 129 (233)
T ss_dssp SSCSC------------CCHHHHHHHHHHHHHHHT--SEEEESEESSGTT--------TTT-TSTTHHHHHHHHHHHHHH
T ss_pred cCcch------------hhhhhhhhhHHHhhhcccc-ceEEEEEeccccc--------ccc-cccccchhhhhhhhhhhh
Confidence 76432 1123346789999999995 4888644333321 000 112334455688888888
Q ss_pred HHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHH-HHcCCC-CceeecCCCCcceeeee-eHHHHHHHHHHHHhhch
Q 013602 262 AHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRD-ILNRKS-IPIFESPDHGTVARDFT-YIDDIVKGCLAALDTAE 338 (439)
Q Consensus 262 ~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~i-~v~Dva~a~~~~l~~~~ 338 (439)
+++ .++++++||||..+..... .+... ...... ...+. ++++....++ ..+|++++...++.++.
T Consensus 130 l~~----~~i~~t~i~~g~f~e~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvg~~va~il~~p~ 197 (233)
T PF05368_consen 130 LRE----SGIPYTIIRPGFFMENLLP------PFAPVVDIKKSKDVVTLP--GPGNQKAVPVTDTRDVGRAVAAILLDPE 197 (233)
T ss_dssp HHH----CTSEBEEEEE-EEHHHHHT------TTHHTTCSCCTSSEEEEE--TTSTSEEEEEEHHHHHHHHHHHHHHSGG
T ss_pred hhh----ccccceeccccchhhhhhh------hhcccccccccceEEEEc--cCCCccccccccHHHHHHHHHHHHcChH
Confidence 776 3999999999987643111 01110 011211 11222 4556556664 99999999999999876
Q ss_pred hccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccc
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN 384 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~ 384 (439)
... .++.+.+++ +.+|+.|+++.+.+.+|.+.++.
T Consensus 198 ~~~----------~~~~~~~~~-~~~t~~eia~~~s~~~G~~v~y~ 232 (233)
T PF05368_consen 198 KHN----------NGKTIFLAG-ETLTYNEIAAILSKVLGKKVKYV 232 (233)
T ss_dssp GTT----------EEEEEEEGG-GEEEHHHHHHHHHHHHTSEEEEE
T ss_pred Hhc----------CCEEEEeCC-CCCCHHHHHHHHHHHHCCccEEe
Confidence 531 237888766 78999999999999999887653
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=165.46 Aligned_cols=233 Identities=18% Similarity=0.147 Sum_probs=151.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHhhccc----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
+|+++|||+ |+||+++++.|+ +|++|++++|+.+. ......+... ...+.++.+|++|.+++.++++..
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEEN----LEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 478999998 799999999996 89999999995321 1111111111 235788999999999999888753
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCC---C--C---CCCCCCC-
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNT---K--V---PFSEKDR- 243 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~---~--~---~~~e~~~- 243 (439)
++|+||||||... ...+++..+++|+.|+.++++++.+.- ..+++|++||........ . . .++.++.
T Consensus 76 ~id~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (275)
T PRK06940 76 PVTGLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELL 152 (275)
T ss_pred CCCEEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccc
Confidence 5899999999743 235678999999999999999886431 112667777754322110 0 0 0000000
Q ss_pred ------C---CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC--ChHHHHHHHHHcCCCCceee
Q 013602 244 ------T---DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD--MAYFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 244 ------~---~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~ 309 (439)
+ ..+...|+.||++.+.+++.++.++ |+++++|+||.|..+-.... ..-......+... .+
T Consensus 153 ~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~--~p--- 227 (275)
T PRK06940 153 SLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAK--SP--- 227 (275)
T ss_pred ccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhh--CC---
Confidence 0 0135689999999999999988874 79999999999987632100 0000111111111 11
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
...+...+|+|.+++.++...... ..|+++.+.++.
T Consensus 228 -------~~r~~~peeia~~~~fL~s~~~~~----------itG~~i~vdgg~ 263 (275)
T PRK06940 228 -------AGRPGTPDEIAALAEFLMGPRGSF----------ITGSDFLVDGGA 263 (275)
T ss_pred -------cccCCCHHHHHHHHHHHcCcccCc----------ccCceEEEcCCe
Confidence 112577899999999987643321 234777776653
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-18 Score=160.30 Aligned_cols=232 Identities=12% Similarity=0.014 Sum_probs=154.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+|+||||+|+||.++++.|+++|++|++++|+.+. ......+.. ...++.++.+|++|.+++.++++..
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g 80 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADA----LEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAG 80 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhC
Confidence 567999999999999999999999999999999994321 111111111 1246789999999999999988865
Q ss_pred CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|++|||||..... ...++++..+++|+.+...+++++ ++.+ .++||++||..... +.
T Consensus 81 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss~~~~~------------~~ 147 (259)
T PRK06125 81 DIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIGAAGEN------------PD 147 (259)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecCccccC------------CC
Confidence 589999999974321 233455678999999988887776 3333 23899999864311 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcC--CCCceeecCCCCcceeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNR--KSIPIFESPDHGTVARDF 320 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~ 320 (439)
.....|+.+|.+.+.+++.++.+. |++++.|+||.+..+... .+....... .....+...........+
T Consensus 148 ~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (259)
T PRK06125 148 ADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRML------TLLKGRARAELGDESRWQELLAGLPLGRP 221 (259)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHH------HHHHhhhhcccCCHHHHHHHhccCCcCCC
Confidence 345679999999999999998763 899999999998776211 010000000 000000000000011135
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..++|+|.+++.++...... ..|..+.+.++
T Consensus 222 ~~~~~va~~~~~l~~~~~~~----------~~G~~i~vdgg 252 (259)
T PRK06125 222 ATPEEVADLVAFLASPRSGY----------TSGTVVTVDGG 252 (259)
T ss_pred cCHHHHHHHHHHHcCchhcc----------ccCceEEecCC
Confidence 67899999999987644321 23477777665
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-19 Score=165.72 Aligned_cols=208 Identities=15% Similarity=0.149 Sum_probs=141.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc------
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV------ 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~------ 173 (439)
|+||||||+|+||++++++|+++|++|++++|.... ... ........++.++.+|++|.++++++++.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~---~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENK---ELT--KLAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQE 76 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchH---HHH--HHHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence 689999999999999999999999999999984321 111 111112346889999999999998888754
Q ss_pred -C--ccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 -S--FTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 -~--~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
. .+++|||||.... ..+.+++...+++|+.++..+++.+ ++.+..++||++||...+.
T Consensus 77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---------- 146 (251)
T PRK06924 77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN---------- 146 (251)
T ss_pred ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC----------
Confidence 1 1279999997533 2233455678889999966555554 3333334899999976532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH-----hCCcEEEEeeccccCCCCCC-----CChHHHHHHHHHcCCCCceeecC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI-----YGLSLTGLRFFTVYGPWGRP-----DMAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~-----~gi~~~ilrpg~v~G~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
+..+...|+.+|.+.+.+++.++.+ .+++++.|+||.+-.+.... .... ..........
T Consensus 147 --~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~-~~~~~~~~~~-------- 215 (251)
T PRK06924 147 --PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDF-TNLDRFITLK-------- 215 (251)
T ss_pred --CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccc-hHHHHHHHHh--------
Confidence 1245678999999999999998776 37999999999886552110 0000 0001111100
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
...-+..++|+|.+++.++...
T Consensus 216 ----~~~~~~~~~dva~~~~~l~~~~ 237 (251)
T PRK06924 216 ----EEGKLLSPEYVAKALRNLLETE 237 (251)
T ss_pred ----hcCCcCCHHHHHHHHHHHHhcc
Confidence 0012578899999999998763
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=160.10 Aligned_cols=205 Identities=14% Similarity=0.118 Sum_probs=144.9
Q ss_pred EEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-----Cc
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-----SF 175 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-----~~ 175 (439)
|+||||+|+||.++++.|+++|++|++++|.... .......+.. ...++.++.+|++|.+++.++++.. ++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 77 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRS---DAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAY 77 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999999999874321 1111111111 1246889999999999998887653 57
Q ss_pred cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH-----hcCCCCeEEEecCCc-ccCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK-----NANPQPAIVWASSSS-VYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 176 d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~-----~~~~~~~~V~~SS~~-v~g~~~~~~~~e~~~~~ 245 (439)
|++|||||..... ...++++..+++|+.++.++++++. +.+ .++||++||.. +++.
T Consensus 78 ~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~vsS~~~~~~~------------- 143 (239)
T TIGR01831 78 YGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQ-GGRIITLASVSGVMGN------------- 143 (239)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC-CeEEEEEcchhhccCC-------------
Confidence 9999999974322 2345567899999999999988652 223 34899999954 4331
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.....|+.+|.+.+.+++.++.++ |+++++++||.+.++..... ..........- ++ ..+..
T Consensus 144 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~--~~----------~~~~~ 208 (239)
T TIGR01831 144 RGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEV---EHDLDEALKTV--PM----------NRMGQ 208 (239)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhh---hHHHHHHHhcC--CC----------CCCCC
Confidence 235689999999999999888764 89999999999987754311 11111222211 11 12345
Q ss_pred HHHHHHHHHHHHhhch
Q 013602 323 IDDIVKGCLAALDTAE 338 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~ 338 (439)
.+|++++++.++....
T Consensus 209 ~~~va~~~~~l~~~~~ 224 (239)
T TIGR01831 209 PAEVASLAGFLMSDGA 224 (239)
T ss_pred HHHHHHHHHHHcCchh
Confidence 7999999999987554
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=160.05 Aligned_cols=203 Identities=13% Similarity=0.139 Sum_probs=146.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--CccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--SFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d~ 177 (439)
|+++||||+|+||+++++.|+++|++|++++|+.+ +. .......++.++++|++|.++++++++.. ++|+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~-------~~-~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~ 72 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD-------DL-EVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDT 72 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH-------HH-HHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcE
Confidence 47999999999999999999999999999998321 11 11111225678999999999999988764 5799
Q ss_pred EEEcccccCc-------cc--cccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 013602 178 VMHLAAQAGV-------RY--AMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 178 Vi~~Ag~~~~-------~~--~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p 247 (439)
+|||||.... .. +.++++..+++|+.++.++++++.+.- ...+||++||... ..
T Consensus 73 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~----------------~~ 136 (223)
T PRK05884 73 IVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP----------------PA 136 (223)
T ss_pred EEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC----------------CC
Confidence 9999985211 01 234567899999999999988875421 1239999998651 23
Q ss_pred CChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
...|+.+|++.+.+++.++.++ |+++++|.||.+..+.. ... . ..+ .-..+
T Consensus 137 ~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~----------~~~-~--~~p-------------~~~~~ 190 (223)
T PRK05884 137 GSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGY----------DGL-S--RTP-------------PPVAA 190 (223)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhh----------hhc-c--CCC-------------CCCHH
Confidence 4689999999999999998874 89999999999865421 000 0 000 11579
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
|++.+++.++...... ..|+++.+.++.
T Consensus 191 ~ia~~~~~l~s~~~~~----------v~G~~i~vdgg~ 218 (223)
T PRK05884 191 EIARLALFLTTPAARH----------ITGQTLHVSHGA 218 (223)
T ss_pred HHHHHHHHHcCchhhc----------cCCcEEEeCCCe
Confidence 9999999987654432 334777776654
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=162.26 Aligned_cols=214 Identities=13% Similarity=0.118 Sum_probs=142.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHH-hhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQA-LLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
+|+||||||+|+||++++++|+++|++|++++|+... ....... .....++.++.+|++|.+++.+++.. ++|+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~id~ 76 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQ----VTALRAEAARRGLALRVEKLDLTDAIDRAQAAEW-DVDV 76 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC-CCCE
Confidence 4689999999999999999999999999999984321 1111111 11123688999999999999998763 5699
Q ss_pred EEEcccccCccc----cccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 013602 178 VMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPAS 249 (439)
Q Consensus 178 Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~ 249 (439)
||||||...... +.++.+..+++|+.++.++.+. +++.+. ++||++||...+.. .....
T Consensus 77 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~SS~~~~~~------------~~~~~ 143 (257)
T PRK09291 77 LLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK-GKVVFTSSMAGLIT------------GPFTG 143 (257)
T ss_pred EEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEcChhhccC------------CCCcc
Confidence 999999754321 2334557889999997666554 445554 49999999653211 12357
Q ss_pred hHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcC-CC-CceeecCCCCcceeeeeeHH
Q 013602 250 LYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNR-KS-IPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~~i~v~ 324 (439)
.|+.+|.+.|.+++.++.+ .|+++++||||.+..+... .....+ ...... .. +.. ........++..+
T Consensus 144 ~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~--~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~ 216 (257)
T PRK09291 144 AYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFND--TMAETP-KRWYDPARNFTDP----EDLAFPLEQFDPQ 216 (257)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchh--hhhhhh-hhhcchhhHHHhh----hhhhccccCCCHH
Confidence 8999999999999888765 4999999999987543211 000000 000000 00 111 0112233567889
Q ss_pred HHHHHHHHHHhhc
Q 013602 325 DIVKGCLAALDTA 337 (439)
Q Consensus 325 Dva~a~~~~l~~~ 337 (439)
|+++.++.++..+
T Consensus 217 ~~~~~~~~~l~~~ 229 (257)
T PRK09291 217 EMIDAMVEVIPAD 229 (257)
T ss_pred HHHHHHHHHhcCC
Confidence 9999988887643
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=163.04 Aligned_cols=207 Identities=15% Similarity=0.105 Sum_probs=146.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++++||||||+|+||.+++++|+++|++|++++|+.+. ......+.....++.++.+|++|.+++.++++..
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEK----LEALAARLPYPGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999994321 1111111112347889999999999988887654
Q ss_pred -CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA---NPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~---~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||..... .+.++....+++|+.|+.++++.+.+. ...+++|++||...+.. .
T Consensus 79 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------~ 146 (263)
T PRK09072 79 GGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIG------------Y 146 (263)
T ss_pred CCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcC------------C
Confidence 579999999975432 122344678999999999998887542 11238999988543211 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.....|+.+|.+.+.+++.++.++ +++++++.||.+.++.... .. .. .. .........
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~----------~~-~~---~~-----~~~~~~~~~ 207 (263)
T PRK09072 147 PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSE----------AV-QA---LN-----RALGNAMDD 207 (263)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhh----------hc-cc---cc-----ccccCCCCC
Confidence 235689999999999999988774 7999999999887653210 00 00 00 000112567
Q ss_pred HHHHHHHHHHHHhhch
Q 013602 323 IDDIVKGCLAALDTAE 338 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~ 338 (439)
++|+|++++.+++...
T Consensus 208 ~~~va~~i~~~~~~~~ 223 (263)
T PRK09072 208 PEDVAAAVLQAIEKER 223 (263)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8999999999998643
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=163.48 Aligned_cols=213 Identities=17% Similarity=0.100 Sum_probs=143.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
|+++||||+|+||.+++++|+++|++|++++|+.+. ......+. .....+.++.+|++|.+++.++++.+
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADG----LAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAH 76 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999984321 11111111 11223566899999999988877764
Q ss_pred -CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... .+.++++..+++|+.++.++++++.. .+..++||++||...+. .
T Consensus 77 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~------------~ 144 (272)
T PRK07832 77 GSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV------------A 144 (272)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC------------C
Confidence 579999999974322 23345567899999999999998742 22224999999965321 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
......|+.+|.+.+.+.+.++.+ .|+++++++||.+.++........ ..-. .......+. .......+
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~-~~~~---~~~~~~~~~----~~~~~~~~ 216 (272)
T PRK07832 145 LPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIA-GVDR---EDPRVQKWV----DRFRGHAV 216 (272)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhccccc-ccCc---chhhHHHHH----HhcccCCC
Confidence 123567999999999999888865 489999999999998743210000 0000 000000000 00011247
Q ss_pred eHHHHHHHHHHHHhh
Q 013602 322 YIDDIVKGCLAALDT 336 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~ 336 (439)
..+|+|.+++.+++.
T Consensus 217 ~~~~vA~~~~~~~~~ 231 (272)
T PRK07832 217 TPEKAAEKILAGVEK 231 (272)
T ss_pred CHHHHHHHHHHHHhc
Confidence 789999999999964
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=165.16 Aligned_cols=171 Identities=18% Similarity=0.192 Sum_probs=128.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+++||||+|+||.+++++|+++|++|++++|+.+ .... ... .....+.++.+|++|.+++.++++.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~-l~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAA----GLQE-LEA-AHGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHH-HHh-hcCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999998432 1111 111 11235888999999999988887754
Q ss_pred --CccEEEEcccccCcc-----ccc----cChhHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR-----YAM----QNPNSYVHSNIAGLVSLLEVCKNAN--PQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~-----~~~----~~~~~~~~~Nv~gt~~ll~~~~~~~--~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+. ++++..+++|+.++.++++++.+.. ..+++|++||...+.
T Consensus 77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~--------- 147 (262)
T TIGR03325 77 FGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY--------- 147 (262)
T ss_pred hCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec---------
Confidence 679999999964211 111 2356789999999999998886431 123788888865431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCC
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPW 285 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~ 285 (439)
+......|+.+|.+.+.+++.++.++ .+++++|.||.|..+-
T Consensus 148 ---~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~ 191 (262)
T TIGR03325 148 ---PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDL 191 (262)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCC
Confidence 11234689999999999999999986 3899999999998763
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=149.04 Aligned_cols=224 Identities=14% Similarity=0.070 Sum_probs=163.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
...|.++||||+++||+++++.|++.|++|.+.+++... ....-.......+...+.+|++++++++..+++.
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~----A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~ 87 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAA----AEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKS 87 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhh----HHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHh
Confidence 455789999999999999999999999999999985541 1111222223356778999999999988877665
Q ss_pred --CccEEEEcccccC----ccccccChhHHHHHHHHHHHHHHHHHHhc----CCCC-eEEEecCCc-ccCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAG----VRYAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQP-AIVWASSSS-VYGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~----~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~-~~V~~SS~~-v~g~~~~~~~~e~ 241 (439)
.|++|+||||+.. .++..++++..+.+|+.|+..+.+++.+. +..+ +||++||+- -.|+
T Consensus 88 ~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN--------- 158 (256)
T KOG1200|consen 88 LGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGN--------- 158 (256)
T ss_pred cCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccc---------
Confidence 7999999999843 24557788899999999988888877543 2122 999999943 2221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
.....|+++|.....|.+.+++|. ++++++|.||.|-.|-.. ...+.+.+.+...-+...+
T Consensus 159 ----~GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~--~mp~~v~~ki~~~iPmgr~---------- 222 (256)
T KOG1200|consen 159 ----FGQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTE--AMPPKVLDKILGMIPMGRL---------- 222 (256)
T ss_pred ----ccchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhh--hcCHHHHHHHHccCCcccc----------
Confidence 356889999999888888877774 899999999999887432 1223456666666665554
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
-..+|+|..++.+....+. ...|..+.+++|
T Consensus 223 --G~~EevA~~V~fLAS~~ss----------YiTG~t~evtGG 253 (256)
T KOG1200|consen 223 --GEAEEVANLVLFLASDASS----------YITGTTLEVTGG 253 (256)
T ss_pred --CCHHHHHHHHHHHhccccc----------cccceeEEEecc
Confidence 2359999998888744432 234477777765
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=167.05 Aligned_cols=201 Identities=16% Similarity=0.151 Sum_probs=138.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC--HHHHHHhh---cc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND--MALLKKLF---DV 172 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~---~~ 172 (439)
.|++++||||+|+||++++++|+++|++|++++|+.+..+....+. ........+..+.+|+++ .+.++++. .+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l-~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSI-QSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH-HHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999543211111110 011112357788999985 34444443 33
Q ss_pred cCccEEEEcccccCc------cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 173 VSFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
.++|++|||||.... ..+.++.+..+++|+.|+.++.+++. +.+ .++||++||...+..
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS~a~~~~---------- 199 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGAIINIGSGAAIVI---------- 199 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CcEEEEEechhhccC----------
Confidence 456799999997532 11233445789999999888888764 334 349999999765321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
+.......|+.||++.+.+.+.++.++ |+++++++||.|-.+-.. .... .. -
T Consensus 200 ~~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~------------~~~~--~~-----------~ 254 (320)
T PLN02780 200 PSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMAS------------IRRS--SF-----------L 254 (320)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccc------------ccCC--CC-----------C
Confidence 001235789999999999999999885 899999999999765211 0000 00 0
Q ss_pred eeeHHHHHHHHHHHHh
Q 013602 320 FTYIDDIVKGCLAALD 335 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~ 335 (439)
....+++|+.++..+.
T Consensus 255 ~~~p~~~A~~~~~~~~ 270 (320)
T PLN02780 255 VPSSDGYARAALRWVG 270 (320)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 2467999999998885
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=154.94 Aligned_cols=182 Identities=18% Similarity=0.177 Sum_probs=138.0
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-CccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~d~V 178 (439)
|+++||||+|+||.+++++|+++ ++|++++|+.. .+++|++|.++++++++.. ++|+|
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~id~l 59 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG--------------------DVQVDITDPASIRALFEKVGKVDAV 59 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC--------------------ceEecCCChHHHHHHHHhcCCCCEE
Confidence 47999999999999999999999 99999998321 4689999999999999876 78999
Q ss_pred EEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 013602 179 MHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAA 253 (439)
Q Consensus 179 i~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~ 253 (439)
|||||..... .+.+++...+++|+.++.++++++.+.- ...+||++||..... +......|+.
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~------------~~~~~~~Y~~ 127 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE------------PIPGGASAAT 127 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC------------CCCCchHHHH
Confidence 9999974332 2234556789999999999999876431 123899999865321 1134578999
Q ss_pred HHHHHHHHHHHHHhH--hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHH
Q 013602 254 TKKAGEEIAHTYNHI--YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331 (439)
Q Consensus 254 sK~a~E~~~~~~~~~--~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 331 (439)
+|.+.+.+++.++.+ .|++++.|+||.+-.+... .+...+ + ..++..+|+|++++
T Consensus 128 sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~~-------------~~~~~~-----~-----~~~~~~~~~a~~~~ 184 (199)
T PRK07578 128 VNGALEGFVKAAALELPRGIRINVVSPTVLTESLEK-------------YGPFFP-----G-----FEPVPAARVALAYV 184 (199)
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchhh-------------hhhcCC-----C-----CCCCCHHHHHHHHH
Confidence 999999999998886 4899999999988543110 010011 1 12578999999999
Q ss_pred HHHhhc
Q 013602 332 AALDTA 337 (439)
Q Consensus 332 ~~l~~~ 337 (439)
.+++..
T Consensus 185 ~~~~~~ 190 (199)
T PRK07578 185 RSVEGA 190 (199)
T ss_pred HHhccc
Confidence 998753
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-18 Score=159.88 Aligned_cols=235 Identities=13% Similarity=0.136 Sum_probs=158.6
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
...+|++|||||+.+||++++++|++.|++|++.+|+.+..+...............+..+.+|+++.+.++++++..
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999554322222211111112346889999999988777666543
Q ss_pred ----CccEEEEcccccCc-----cccccChhHHHHHHHHH-HHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAG-LVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~g-t~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|++|||||.... +.+++.++..+++|+.| ...+..++ ++.+. ..|+++||...+...
T Consensus 85 ~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~g-g~I~~~ss~~~~~~~------ 157 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKG-GSIVNISSVAGVGPG------ 157 (270)
T ss_pred HhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCC-ceEEEEeccccccCC------
Confidence 68999999997553 23456677899999996 45555444 33332 389999987654311
Q ss_pred CCCCCCCCC-ChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC---ChHHHHHHHHHcCCCCceeecCC
Q 013602 240 EKDRTDQPA-SLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD---MAYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 240 e~~~~~~p~-~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
.+. ..|+.+|.+.+.+++.++.++ |+++++|-||.|..+-.... .....+.........++.
T Consensus 158 ------~~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~p~----- 226 (270)
T KOG0725|consen 158 ------PGSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVPL----- 226 (270)
T ss_pred ------CCCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhcccccccc-----
Confidence 122 689999999999999999884 89999999999988751100 000111111001111111
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
-.+...+|++.++..+....... ..|+.+.+.++..
T Consensus 227 -----gr~g~~~eva~~~~fla~~~asy----------itG~~i~vdgG~~ 262 (270)
T KOG0725|consen 227 -----GRVGTPEEVAEAAAFLASDDASY----------ITGQTIIVDGGFT 262 (270)
T ss_pred -----CCccCHHHHHHhHHhhcCccccc----------ccCCEEEEeCCEE
Confidence 23566899999999887765431 3346776666543
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=154.56 Aligned_cols=207 Identities=16% Similarity=0.161 Sum_probs=145.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+++|+||||+|+||.++++.|+++|++|++++|+.+. ............++.++.+|++|.+++++++++.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENK----LKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999994321 1111111112246889999999999998887654
Q ss_pred --CccEEEEcccccCcc--ccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcc-cCCCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR--YAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSV-YGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~--~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v-~g~~~~~~~~e~~~~~~p 247 (439)
.+|.+||++|..... ...++.+..+++|+.++..+++.+.+.- ...+||++||... ++ ...+
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~~~~ 146 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK------------ASPD 146 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc------------CCCC
Confidence 369999999863221 1123445678999999888877765431 1238999998653 21 1134
Q ss_pred CChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
...|+.+|.+.+.+++.++.++ |++++++|||.++++... .. . .+. ... .+ ..++..+
T Consensus 147 ~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~-~~----~----~~~--~~~-----~~---~~~~~~~ 207 (238)
T PRK05786 147 QLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEP-ER----N----WKK--LRK-----LG---DDMAPPE 207 (238)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCc-hh----h----hhh--hcc-----cc---CCCCCHH
Confidence 5679999999999999988774 899999999999987421 00 0 000 000 00 1246679
Q ss_pred HHHHHHHHHHhhch
Q 013602 325 DIVKGCLAALDTAE 338 (439)
Q Consensus 325 Dva~a~~~~l~~~~ 338 (439)
|++++++.++....
T Consensus 208 ~va~~~~~~~~~~~ 221 (238)
T PRK05786 208 DFAKVIIWLLTDEA 221 (238)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999987543
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=167.84 Aligned_cols=181 Identities=15% Similarity=0.106 Sum_probs=128.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+|+++||||+++||.++++.|+++| ++|++++|+.+.. .....+.. ....+.++.+|++|.++++++++..
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~----~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 78 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKA----EQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRES 78 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHH----HHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 5799999999999999999999999 9999999844311 11111111 1235778899999999998888653
Q ss_pred --CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHH----HhcCC-CCeEEEecCCcccCCCC----CCC
Q 013602 174 --SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVC----KNANP-QPAIVWASSSSVYGLNT----KVP 237 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~-~~~~V~~SS~~v~g~~~----~~~ 237 (439)
++|++|||||+.... .+.++.+..+++|+.|+..+++++ ++.+. .++||++||...+.... ..+
T Consensus 79 ~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~ 158 (314)
T TIGR01289 79 GRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPK 158 (314)
T ss_pred CCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCc
Confidence 589999999974321 233456778999999977776554 33321 24999999987653210 000
Q ss_pred C--CC---------------CCCCCCCCChHHHHHHHHHHHHHHHHhHh----CCcEEEEeeccccC
Q 013602 238 F--SE---------------KDRTDQPASLYAATKKAGEEIAHTYNHIY----GLSLTGLRFFTVYG 283 (439)
Q Consensus 238 ~--~e---------------~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~----gi~~~ilrpg~v~G 283 (439)
. .+ +.....+...|+.||++...+++++++++ |+++++|+||.|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 225 (314)
T TIGR01289 159 ANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIAD 225 (314)
T ss_pred ccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccC
Confidence 0 00 01112345789999999999999988763 79999999999853
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-18 Score=157.40 Aligned_cols=197 Identities=16% Similarity=0.178 Sum_probs=137.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
|+|+||||+++||.+++++|+ +|++|++++|+.+.. .....+.. ....+.++.+|++|.++++++++..
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~----~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 75 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAA----QGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELA 75 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHH----HHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhc
Confidence 579999999999999999998 599999999954321 11111111 1224788999999999998887654
Q ss_pred -CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|++|||||...... ..++....+++|+.+...++.. +.+.+..++||++||...+- +
T Consensus 76 g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~ 143 (246)
T PRK05599 76 GEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR------------A 143 (246)
T ss_pred CCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc------------C
Confidence 6899999999754321 1222345678888887655444 44433234999999965421 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
......|+.+|.+.+.+++.++.++ |++++++.||.|..+-.. +.. +. +. ..
T Consensus 144 ~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~--------------~~~-~~------~~----~~ 198 (246)
T PRK05599 144 RRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTT--------------GMK-PA------PM----SV 198 (246)
T ss_pred CcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhc--------------CCC-CC------CC----CC
Confidence 1235689999999999999998874 799999999999765211 100 00 00 14
Q ss_pred eHHHHHHHHHHHHhhch
Q 013602 322 YIDDIVKGCLAALDTAE 338 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~ 338 (439)
..+|+|++++.++....
T Consensus 199 ~pe~~a~~~~~~~~~~~ 215 (246)
T PRK05599 199 YPRDVAAAVVSAITSSK 215 (246)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 57999999999988654
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-18 Score=158.74 Aligned_cols=203 Identities=17% Similarity=0.149 Sum_probs=142.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccC--CHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDIN--DMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~--d~~~~~~~~~~ 172 (439)
.++|+|+||||+|+||.+++++|+++|++|++++|+... ......+. ....++.++.+|+. +.+++.++++.
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEK----LEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHH----HHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 11111111 12235677788886 66666666554
Q ss_pred c-----CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~ 238 (439)
+ ++|+||||||..... ...++++..+++|+.|+.++++++. +.+ .++||++||......
T Consensus 86 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~-~~~iv~~ss~~~~~~------ 158 (247)
T PRK08945 86 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSP-AASLVFTSSSVGRQG------ 158 (247)
T ss_pred HHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEEccHhhcCC------
Confidence 3 579999999975331 2234456789999999888888764 344 349999999654211
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
......|+.+|++.+.+++.+++++ ++++++++||.+.++-... ..... .
T Consensus 159 ------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~----------~~~~~---------~-- 211 (247)
T PRK08945 159 ------RANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRAS----------AFPGE---------D-- 211 (247)
T ss_pred ------CCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhh----------hcCcc---------c--
Confidence 1234689999999999999988875 7999999999886652110 00000 0
Q ss_pred ceeeeeeHHHHHHHHHHHHhhch
Q 013602 316 VARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
...+...+|++.+++.++....
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~ 233 (247)
T PRK08945 212 -PQKLKTPEDIMPLYLYLMGDDS 233 (247)
T ss_pred -ccCCCCHHHHHHHHHHHhCccc
Confidence 0125678999999999875444
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=181.39 Aligned_cols=173 Identities=17% Similarity=0.159 Sum_probs=133.6
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.+.++++|||||+|+||++++++|+++|++|++++|+.+. ........ ....++.++.+|++|.+++.++++.+
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 387 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAA----AERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVR 387 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999994321 11111111 11236889999999999999988765
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||+.... .+.++.+..+++|+.|+.++++++. +.+..++||++||.+.|..
T Consensus 388 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--------- 458 (582)
T PRK05855 388 AEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAP--------- 458 (582)
T ss_pred HhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC---------
Confidence 579999999985432 2334566789999999988888754 3332249999999887642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGP 284 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~ 284 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|-.+
T Consensus 459 ---~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 459 ---SRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred ---CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 1346789999999999999988774 899999999999765
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=162.13 Aligned_cols=166 Identities=20% Similarity=0.118 Sum_probs=125.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcc------
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDV------ 172 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~------ 172 (439)
+|+||||||+|+||.+++++|+++|++|++++|+... .. . .....++.++++|++|.+++++++++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~------~~-~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 72 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP------SL-A-AAAGERLAEVELDLSDAAAAAAWLAGDLLAAF 72 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcch------hh-h-hccCCeEEEEEeccCCHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999985431 11 1 11224688999999999999886544
Q ss_pred ---cCccEEEEcccccCccc-----cccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCCC
Q 013602 173 ---VSFTHVMHLAAQAGVRY-----AMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 173 ---~~~d~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
.++|++|||||...... +.+++...+++|+.++..+.+.+.+.. ..++||++||...+.
T Consensus 73 ~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---------- 142 (243)
T PRK07023 73 VDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN---------- 142 (243)
T ss_pred ccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC----------
Confidence 25799999999754311 233456789999999777666654321 134999999977643
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH--hCCcEEEEeeccccCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI--YGLSLTGLRFFTVYGP 284 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~--~gi~~~ilrpg~v~G~ 284 (439)
+..+...|+.+|.+.|.+++.++.+ .++++++|+||.+-.+
T Consensus 143 --~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 143 --AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 1135678999999999999998875 4899999999998654
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=156.25 Aligned_cols=192 Identities=19% Similarity=0.130 Sum_probs=141.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---Cc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---SF 175 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---~~ 175 (439)
+++++||||+|+||++++++|+++|++|++++|+.+. .+.....++.++.+|++|.++++++++.. ++
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~---------~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 71 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAA---------LAALQALGAEALALDVADPASVAGLAWKLDGEAL 71 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHH---------HHHHHhccceEEEecCCCHHHHHHHHHHhcCCCC
Confidence 3689999999999999999999999999999984321 11112235678999999999999876543 58
Q ss_pred cEEEEcccccCcc------ccccChhHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCC-cccCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR------YAMQNPNSYVHSNIAGLVSLLEVCKNA--NPQPAIVWASSS-SVYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 176 d~Vi~~Ag~~~~~------~~~~~~~~~~~~Nv~gt~~ll~~~~~~--~~~~~~V~~SS~-~v~g~~~~~~~~e~~~~~~ 246 (439)
|+||||||..... .+.++++..+++|+.++.++++++.+. ....++|++||. ++++... ..
T Consensus 72 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~ 141 (222)
T PRK06953 72 DAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDAT----------GT 141 (222)
T ss_pred CEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCccccccccc----------CC
Confidence 9999999975321 134456789999999999999988642 112388999885 4444211 11
Q ss_pred CCChHHHHHHHHHHHHHHHHhHh-CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHH
Q 013602 247 PASLYAATKKAGEEIAHTYNHIY-GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDD 325 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~-gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~D 325 (439)
+...|+.+|.+.+.+++.++.++ +++++.++||.+..+... . ...+..+|
T Consensus 142 ~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~--------------~---------------~~~~~~~~ 192 (222)
T PRK06953 142 TGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGG--------------A---------------QAALDPAQ 192 (222)
T ss_pred CccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC--------------C---------------CCCCCHHH
Confidence 22469999999999999988775 899999999999776321 0 01245688
Q ss_pred HHHHHHHHHhhch
Q 013602 326 IVKGCLAALDTAE 338 (439)
Q Consensus 326 va~a~~~~l~~~~ 338 (439)
.+..+..++....
T Consensus 193 ~~~~~~~~~~~~~ 205 (222)
T PRK06953 193 SVAGMRRVIAQAT 205 (222)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888876553
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=158.79 Aligned_cols=218 Identities=11% Similarity=0.003 Sum_probs=142.1
Q ss_pred cCCCCEEEEECC--CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh------hhc----CCeEEEEccc--C
Q 013602 96 ARNGISVLVTGA--AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL------LER----SGIFIVEGDI--N 161 (439)
Q Consensus 96 ~~~~~~VlItGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~----~~v~~~~~Dl--~ 161 (439)
.++||++||||| +++||.++++.|+++|++|++ +|+.+..+.......... ... .....+.+|+ +
T Consensus 6 ~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 84 (303)
T PLN02730 6 DLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFD 84 (303)
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecC
Confidence 478999999999 899999999999999999998 664332222111111100 011 1246788898 3
Q ss_pred CH------------------HHHHHhhccc-----CccEEEEcccccCc------cccccChhHHHHHHHHHHHHHHHHH
Q 013602 162 DM------------------ALLKKLFDVV-----SFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAGLVSLLEVC 212 (439)
Q Consensus 162 d~------------------~~~~~~~~~~-----~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~ 212 (439)
+. ++++++++.+ ++|+||||||.... ..+.+++...+++|+.++..+++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~ 164 (303)
T PLN02730 85 TPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHF 164 (303)
T ss_pred ccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 33 3677776654 58999999975321 2334567789999999988888776
Q ss_pred HhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhHh----CCcEEEEeeccccCCCC
Q 013602 213 KNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPA-SLYAATKKAGEEIAHTYNHIY----GLSLTGLRFFTVYGPWG 286 (439)
Q Consensus 213 ~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~-~~Y~~sK~a~E~~~~~~~~~~----gi~~~ilrpg~v~G~~~ 286 (439)
...- ...+||++||..... ..... ..|+.+|++.+.+++.++.++ |++++.|.||.|..+-.
T Consensus 165 ~p~m~~~G~II~isS~a~~~------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~~ 232 (303)
T PLN02730 165 GPIMNPGGASISLTYIASER------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRAA 232 (303)
T ss_pred HHHHhcCCEEEEEechhhcC------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCchh
Confidence 5431 113999999965421 10113 379999999999999998874 69999999999977632
Q ss_pred CCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 287 RPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 287 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
.............. ...+. ..+...+|++.+++.++....
T Consensus 233 ~~~~~~~~~~~~~~--~~~pl----------~r~~~peevA~~~~fLaS~~a 272 (303)
T PLN02730 233 KAIGFIDDMIEYSY--ANAPL----------QKELTADEVGNAAAFLASPLA 272 (303)
T ss_pred hcccccHHHHHHHH--hcCCC----------CCCcCHHHHHHHHHHHhCccc
Confidence 21000001111111 11111 124568999999999986544
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=161.32 Aligned_cols=177 Identities=12% Similarity=0.078 Sum_probs=127.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCC------hhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD------PSLKKARQALLE-RSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~------~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~ 169 (439)
+++|+++||||+++||.++++.|+++|++|++++|+..... ............ ...+.++++|++|+++++++
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 67899999999999999999999999999999999753221 111111111111 23577899999999999988
Q ss_pred hccc-----CccEEEEcc-cccC-----cc---ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcc-c
Q 013602 170 FDVV-----SFTHVMHLA-AQAG-----VR---YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSV-Y 230 (439)
Q Consensus 170 ~~~~-----~~d~Vi~~A-g~~~-----~~---~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v-~ 230 (439)
++.+ ++|++|||| |... .. ...++....+++|+.++..+.+++.+ .+ ..+||++||... +
T Consensus 86 ~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~-~g~IV~isS~~~~~ 164 (305)
T PRK08303 86 VERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRP-GGLVVEITDGTAEY 164 (305)
T ss_pred HHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCC-CcEEEEECCccccc
Confidence 8764 689999999 7421 11 11233456789999997777766643 32 249999999543 2
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCC
Q 013602 231 GLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGP 284 (439)
Q Consensus 231 g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~ 284 (439)
+.. .......|+.+|.+.+.+++.++.++ |+++++|.||.|-.+
T Consensus 165 ~~~----------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 165 NAT----------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE 211 (305)
T ss_pred cCc----------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence 110 11224579999999999999998875 799999999988654
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-17 Score=170.78 Aligned_cols=171 Identities=19% Similarity=0.173 Sum_probs=130.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
..+|++|||||+++||.+++++|+++|++|++++|+.+. .... .... ..++.++.+|++|+++++++++..
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~-~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVER----ARER-ADSL-GPDHHALAMDVSDEAQIREGFEQLHRE 76 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHH-HHHh-CCceeEEEeccCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999984321 1111 1111 246778999999999999888764
Q ss_pred --CccEEEEcccccCc------cccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++++..+++|+.++..+++++.+. +...+||++||......
T Consensus 77 ~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~--------- 147 (520)
T PRK06484 77 FGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVA--------- 147 (520)
T ss_pred hCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCC---------
Confidence 58999999997321 2234456789999999998888887543 22238999999654321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPW 285 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~ 285 (439)
......|+.+|++.+.+++.++.++ ++++++|+||.|..+.
T Consensus 148 ---~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~ 191 (520)
T PRK06484 148 ---LPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQM 191 (520)
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchh
Confidence 1235789999999999999998874 8999999999987663
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=156.87 Aligned_cols=211 Identities=14% Similarity=0.083 Sum_probs=140.0
Q ss_pred EEEEECCCChHHHHHHHHHHh----CCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 101 SVLVTGAAGFVGTHVSAALKR----RGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~----~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
.++||||+++||.+++++|++ .|++|++++|+.+..+....... .......+.++.+|++|.++++++++..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~-~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIG-AERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHH-hcCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 589999999999999999997 79999999995432111111100 0011236888999999999998887654
Q ss_pred ------CccEEEEcccccCcc---c----cccChhHHHHHHHHHHHHHHHHHHh----c-CCCCeEEEecCCcccCCCCC
Q 013602 174 ------SFTHVMHLAAQAGVR---Y----AMQNPNSYVHSNIAGLVSLLEVCKN----A-NPQPAIVWASSSSVYGLNTK 235 (439)
Q Consensus 174 ------~~d~Vi~~Ag~~~~~---~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~-~~~~~~V~~SS~~v~g~~~~ 235 (439)
..|+||||||..... . ..++.+..+++|+.++..+.+++.+ . +..++||++||...+.
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~---- 156 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ---- 156 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC----
Confidence 136999999974321 1 1234567999999997777666543 2 2224899999976432
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC---CChHHHHHHHHHcCCCCceee
Q 013602 236 VPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP---DMAYFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 236 ~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~---~~~~~~~~~~~~~g~~~~~~~ 309 (439)
+......|+.+|.+.+.+++.++.++ |+++++++||.|-.+.... ...-......+....
T Consensus 157 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~------ 222 (256)
T TIGR01500 157 --------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELK------ 222 (256)
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHHH------
Confidence 11345789999999999999998874 7999999999997652110 000000000000000
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhh
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
...-+...+|+|.+++.++..
T Consensus 223 ------~~~~~~~p~eva~~~~~l~~~ 243 (256)
T TIGR01500 223 ------AKGKLVDPKVSAQKLLSLLEK 243 (256)
T ss_pred ------hcCCCCCHHHHHHHHHHHHhc
Confidence 011256789999999999863
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-17 Score=165.06 Aligned_cols=223 Identities=20% Similarity=0.137 Sum_probs=153.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.++++|||||+|+||.++++.|+++|++|++++|... .+...+.....+..++.+|++|.++++++++..
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~------~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAA------GEALAAVANRVGGTALALDITAPDAPARIAEHLAER 281 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCcc------HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999987321 111111112234568899999999998888754
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCC---CCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANP---QPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~---~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... .+.++++..+++|+.|+.++.+++..... ..+||++||...+..
T Consensus 282 ~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g------------ 349 (450)
T PRK08261 282 HGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAG------------ 349 (450)
T ss_pred CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC------------
Confidence 579999999975322 23345567899999999999999875321 239999999654321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
......|+.+|.+.+.+++.++.+ .|+++++|.||.+-.+-... +........+. ...+ ....
T Consensus 350 ~~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~---~~~~~~~~~~~-~~~l----------~~~~ 415 (450)
T PRK08261 350 NRGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAA---IPFATREAGRR-MNSL----------QQGG 415 (450)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhc---cchhHHHHHhh-cCCc----------CCCC
Confidence 124578999999999999988776 48999999999986432110 11111111111 0111 1123
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+|++.+++.++...... ..|+++.++++
T Consensus 416 ~p~dva~~~~~l~s~~~~~----------itG~~i~v~g~ 445 (450)
T PRK08261 416 LPVDVAETIAWLASPASGG----------VTGNVVRVCGQ 445 (450)
T ss_pred CHHHHHHHHHHHhChhhcC----------CCCCEEEECCC
Confidence 3579999999887643321 34578887664
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=153.37 Aligned_cols=169 Identities=12% Similarity=0.108 Sum_probs=124.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+++||||+++||.+++++|+++|++|++++|+.+..+ +...+. .....+..+.+|++|.++++++++..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~----~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALK----DTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQ 78 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHH----HHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999998543211 111111 11245778899999999998887643
Q ss_pred ----CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|++|||||..... .+.++....+++|+.++..+++.+ ++.+..+.||++||...+
T Consensus 79 ~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~---------- 148 (227)
T PRK08862 79 QFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH---------- 148 (227)
T ss_pred HhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC----------
Confidence 589999999853221 122334457788888866665443 343323499999985431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCC
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGP 284 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~ 284 (439)
.+...|+.+|++.+.+++.++.++ |++++.|.||.+-.+
T Consensus 149 -----~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 -----QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 235689999999999999998874 899999999998776
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=178.73 Aligned_cols=202 Identities=17% Similarity=0.145 Sum_probs=148.6
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+. ......+. .....+.++.+|++|.++++++++.+
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 443 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEA----LDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDIL 443 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999994321 11111111 11246889999999999999888754
Q ss_pred ----CccEEEEcccccCccc---c---ccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVRY---A---MQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~---~---~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||...... . .++++..+++|+.|+.++++++ ++.+. ++||++||.+.++..
T Consensus 444 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~------ 516 (657)
T PRK07201 444 AEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRF-GHVVNVSSIGVQTNA------ 516 (657)
T ss_pred HhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CEEEEECChhhcCCC------
Confidence 6799999999743211 1 1345688999999988876665 34443 499999998876421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.....|+.+|++.+.+++.++.++ |+++++|+||.|..+...+.. .+.
T Consensus 517 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~----------------~~~------- 567 (657)
T PRK07201 517 ------PRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTK----------------RYN------- 567 (657)
T ss_pred ------CCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCccc----------------ccc-------
Confidence 235789999999999999988774 899999999999876432110 010
Q ss_pred eeeeeeHHHHHHHHHHHHhhc
Q 013602 317 ARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~ 337 (439)
....+..+++|+.++..+...
T Consensus 568 ~~~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 568 NVPTISPEEAADMVVRAIVEK 588 (657)
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 012467899999999887643
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=162.71 Aligned_cols=265 Identities=18% Similarity=0.189 Sum_probs=183.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC---CeEEEEECCCCCCChhHHHHHH-------Hhhh-----cCCeEEEEcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG---DGVLGLDNFNDYYDPSLKKARQ-------ALLE-----RSGIFIVEGDIN 161 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~-------~~~~-----~~~v~~~~~Dl~ 161 (439)
..+|+|+|||||||+|+-+++.|++.- -+++++-|.+.+-+...+-... .... ..++..+.+|++
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 578999999999999999999999864 3899999977654433321111 0111 157889999998
Q ss_pred CH------HHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC---
Q 013602 162 DM------ALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGL--- 232 (439)
Q Consensus 162 d~------~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~--- 232 (439)
++ ..++...+++ |+|||+||...++ +.......+|..||.++++.|++....+.+|++|++.+.-.
T Consensus 90 ~~~LGis~~D~~~l~~eV--~ivih~AAtvrFd---e~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~ 164 (467)
T KOG1221|consen 90 EPDLGISESDLRTLADEV--NIVIHSAATVRFD---EPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGH 164 (467)
T ss_pred CcccCCChHHHHHHHhcC--CEEEEeeeeeccc---hhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccccc
Confidence 65 3455666767 9999999975543 55667899999999999999998877779999999877521
Q ss_pred CCCCCCCCCC-----------------------C--CCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 233 NTKVPFSEKD-----------------------R--TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 233 ~~~~~~~e~~-----------------------~--~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
..+.++.+.. + .....+.|.-+|+.+|..+.+.++ +++++|+||+.|...+..
T Consensus 165 i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~--~lPivIiRPsiI~st~~E 242 (467)
T KOG1221|consen 165 IEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE--NLPLVIIRPSIITSTYKE 242 (467)
T ss_pred ccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc--CCCeEEEcCCceeccccC
Confidence 1111111110 0 001246799999999999998765 899999999999887654
Q ss_pred CCChH-------HHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecC
Q 013602 288 PDMAY-------FFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN 360 (439)
Q Consensus 288 ~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 360 (439)
|-..+ ..++-.+-+|.--.++ .+.+...++|.+|.++.+++.+.-.-..... + ..-.+||+++
T Consensus 243 P~pGWidn~~gp~g~i~g~gkGvlr~~~---~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~----~---~~~~IY~~ts 312 (467)
T KOG1221|consen 243 PFPGWIDNLNGPDGVIIGYGKGVLRCFL---VDPKAVADIIPVDMVVNAMIASAWQHAGNSK----E---KTPPIYHLTS 312 (467)
T ss_pred CCCCccccCCCCceEEEEeccceEEEEE---EccccccceeeHHHHHHHHHHHHHHHhccCC----C---CCCcEEEecc
Confidence 32110 0111111223222333 4678888999999999999977632221111 0 1226999999
Q ss_pred C--CcccHHHHHHHHHHHhC
Q 013602 361 T--SPVPVSDLVSILERLLK 378 (439)
Q Consensus 361 ~--~~~t~~el~~~l~~~~g 378 (439)
+ .++++.++.+...+...
T Consensus 313 s~~Np~t~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 313 SNDNPVTWGDFIELALRYFE 332 (467)
T ss_pred cccCcccHHHHHHHHHHhcc
Confidence 5 58999999999888765
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=153.67 Aligned_cols=169 Identities=20% Similarity=0.146 Sum_probs=126.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---Cc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---SF 175 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---~~ 175 (439)
+|+|+||||+|+||++++++|+++|++|++++|+..... . .....++.++.+|++|.++++++++.. ++
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~----~----~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~i 72 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDT----A----LQALPGVHIEKLDMNDPASLDQLLQRLQGQRF 72 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchH----H----HHhccccceEEcCCCCHHHHHHHHHHhhcCCC
Confidence 368999999999999999999999999999999654211 1 111246788899999999988888764 68
Q ss_pred cEEEEcccccCcc------ccccChhHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR------YAMQNPNSYVHSNIAGLVSLLEVCKNAN--PQPAIVWASSSSVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 176 d~Vi~~Ag~~~~~------~~~~~~~~~~~~Nv~gt~~ll~~~~~~~--~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p 247 (439)
|+||||||..... ...++....+++|+.++..+++++...- ...++|++||.. |.... .+..+
T Consensus 73 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~--g~~~~-------~~~~~ 143 (225)
T PRK08177 73 DLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQL--GSVEL-------PDGGE 143 (225)
T ss_pred CEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCc--ccccc-------CCCCC
Confidence 9999999975321 1223445788999999988888875431 123888888743 22110 01123
Q ss_pred CChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCC
Q 013602 248 ASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGP 284 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~ 284 (439)
...|+.+|.+.+.+++.+++++ ++++++|+||.+-.+
T Consensus 144 ~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~ 183 (225)
T PRK08177 144 MPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTD 183 (225)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecC
Confidence 4579999999999999998874 799999999998765
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-18 Score=145.33 Aligned_cols=212 Identities=21% Similarity=0.231 Sum_probs=154.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
..|+.|++||+.-+||+.+++.|++.|++|+++.|... .....-.....-++.+.+|+++-+.+++++..+ .+
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a------~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pi 78 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEA------NLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPI 78 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHH------HHHHHHhhCCcceeeeEecccHHHHHHHhhcccCch
Confidence 68999999999999999999999999999999999221 111222223345899999999999999988776 57
Q ss_pred cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 176 d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p 247 (439)
|.++||||+.... .+++++++.|++|+.+..++.+. +...+....||++||.+.. .+...
T Consensus 79 dgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~------------R~~~n 146 (245)
T KOG1207|consen 79 DGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI------------RPLDN 146 (245)
T ss_pred hhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc------------cccCC
Confidence 9999999985432 35677888999999997777776 3344545589999996642 12245
Q ss_pred CChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
.+.|+++|.+.+.+.+.++-+. .++++.+.|..|...-+..+..=+.--..++...++. -|..++
T Consensus 147 HtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~K~k~mL~riPl~------------rFaEV~ 214 (245)
T KOG1207|consen 147 HTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLDRIPLK------------RFAEVD 214 (245)
T ss_pred ceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCchhccchhhhCchh------------hhhHHH
Confidence 6899999999999999999886 4899999999987542211100001111122222222 378899
Q ss_pred HHHHHHHHHHhhch
Q 013602 325 DIVKGCLAALDTAE 338 (439)
Q Consensus 325 Dva~a~~~~l~~~~ 338 (439)
.++.+++.++...+
T Consensus 215 eVVnA~lfLLSd~s 228 (245)
T KOG1207|consen 215 EVVNAVLFLLSDNS 228 (245)
T ss_pred HHHhhheeeeecCc
Confidence 99999998876554
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-17 Score=150.54 Aligned_cols=188 Identities=17% Similarity=0.156 Sum_probs=129.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+++|+++||||+|+||++++++|+++|++|++++|+... ... .. ......++.+|++|.+++.+.+..+ |
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~------~~~-~~-~~~~~~~~~~D~~~~~~~~~~~~~i--D 81 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKIN------NSE-SN-DESPNEWIKWECGKEESLDKQLASL--D 81 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchh------hhh-hh-ccCCCeEEEeeCCCHHHHHHhcCCC--C
Confidence 678999999999999999999999999999999985411 000 11 1112367899999999999887754 9
Q ss_pred EEEEcccccCc-cccccChhHHHHHHHHHHHHHHHHHHhcC------CCCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 013602 177 HVMHLAAQAGV-RYAMQNPNSYVHSNIAGLVSLLEVCKNAN------PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPAS 249 (439)
Q Consensus 177 ~Vi~~Ag~~~~-~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~------~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~ 249 (439)
++|||||.... ..+.+++...+++|+.|+.++++++.+.. ..+.++..||.+... + ....
T Consensus 82 ilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~------------~-~~~~ 148 (245)
T PRK12367 82 VLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ------------P-ALSP 148 (245)
T ss_pred EEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC------------C-CCCc
Confidence 99999997432 22345677899999999999988875321 112344444443221 1 1245
Q ss_pred hHHHHHHHHHHHHHHHHh----H---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 250 LYAATKKAGEEIAHTYNH----I---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~----~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.|+.||++.+.+. .+++ + .++.+..+.||.+..+-. +. ..+.
T Consensus 149 ~Y~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~-------------------~~-----------~~~~ 197 (245)
T PRK12367 149 SYEISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGPFRSELN-------------------PI-----------GIMS 197 (245)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCCcccccC-------------------cc-----------CCCC
Confidence 7999999986543 3333 2 378888888876532210 00 1356
Q ss_pred HHHHHHHHHHHHhhch
Q 013602 323 IDDIVKGCLAALDTAE 338 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~ 338 (439)
.+|+|+.++.++....
T Consensus 198 ~~~vA~~i~~~~~~~~ 213 (245)
T PRK12367 198 ADFVAKQILDQANLGL 213 (245)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 8999999999987655
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-17 Score=150.40 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=137.7
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Ccc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~d 176 (439)
|+|+||||+|+||++++++|+++| +.|.+..|+... ......+.++++|++|.++++++.+.. ++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~~Dls~~~~~~~~~~~~~~id 69 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKP-----------DFQHDNVQWHALDVTDEAEIKQLSEQFTQLD 69 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcc-----------ccccCceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 589999999999999999999986 566666653221 012357889999999999988877655 579
Q ss_pred EEEEcccccCcc-----c-----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 177 HVMHLAAQAGVR-----Y-----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 177 ~Vi~~Ag~~~~~-----~-----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
+||||||..... . ..+.....+++|+.++..+++.+.. .+. ++++++||.. +... +.
T Consensus 70 ~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~-~~i~~iss~~--~~~~-----~~- 140 (235)
T PRK09009 70 WLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSES-AKFAVISAKV--GSIS-----DN- 140 (235)
T ss_pred EEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCC-ceEEEEeecc--cccc-----cC-
Confidence 999999985421 0 1122446899999998777776643 232 3899998732 1100 00
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh-----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY-----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~-----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
...+...|+.+|++.+.+++.++.+. +++++.|.||.+.++.... + .. ..+ .
T Consensus 141 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~------~----~~--~~~----------~ 197 (235)
T PRK09009 141 -RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKP------F----QQ--NVP----------K 197 (235)
T ss_pred -CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcc------h----hh--ccc----------c
Confidence 11345689999999999999998763 7899999999998764321 0 00 011 1
Q ss_pred eeeeeHHHHHHHHHHHHhhch
Q 013602 318 RDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~ 338 (439)
..++..+|+|++++.++....
T Consensus 198 ~~~~~~~~~a~~~~~l~~~~~ 218 (235)
T PRK09009 198 GKLFTPEYVAQCLLGIIANAT 218 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCC
Confidence 124678999999999988764
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-17 Score=156.63 Aligned_cols=177 Identities=15% Similarity=0.114 Sum_probs=122.5
Q ss_pred EEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-----Cc
Q 013602 103 LVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-----SF 175 (439)
Q Consensus 103 lItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-----~~ 175 (439)
+||||+++||.+++++|+++| ++|++.+|+.+. ......+.. ....+.++.+|++|.++++++++.+ ++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i 76 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLK----AERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPL 76 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHH----HHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 699999999999999999999 999999984321 111111111 1236788999999999998888754 58
Q ss_pred cEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHH----HhcCC-CCeEEEecCCcccCCCC-C--CC---C-
Q 013602 176 THVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVC----KNANP-QPAIVWASSSSVYGLNT-K--VP---F- 238 (439)
Q Consensus 176 d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~-~~~~V~~SS~~v~g~~~-~--~~---~- 238 (439)
|+||||||+.... .+.++.+..+++|+.|+..+++++ ++.+. .++||++||...+-... . .+ +
T Consensus 77 D~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~ 156 (308)
T PLN00015 77 DVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 156 (308)
T ss_pred CEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchh
Confidence 9999999974321 233456789999999977775554 33331 24999999975431100 0 00 0
Q ss_pred ---------CCC-------CCCCCCCChHHHHHHHHHHHHHHHHhHh----CCcEEEEeeccccC
Q 013602 239 ---------SEK-------DRTDQPASLYAATKKAGEEIAHTYNHIY----GLSLTGLRFFTVYG 283 (439)
Q Consensus 239 ---------~e~-------~~~~~p~~~Y~~sK~a~E~~~~~~~~~~----gi~~~ilrpg~v~G 283 (439)
.+. .....+...|+.||++.+.+++++++++ |+++++|+||.|..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 221 (308)
T PLN00015 157 DLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIAT 221 (308)
T ss_pred hhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccC
Confidence 000 0011245679999999888888888764 79999999999954
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=138.54 Aligned_cols=168 Identities=16% Similarity=0.173 Sum_probs=128.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
..|.+||||||+++||..++++|.+.|-+|++..|+. ..........+.+..+.+|+.|.++.+++++..
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e-------~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~ 75 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNE-------ERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKE 75 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcH-------HHHHHHHhcCcchheeeecccchhhHHHHHHHHHhh
Confidence 5688999999999999999999999999999999922 222222334578899999999999888777654
Q ss_pred --CccEEEEcccccCc-c-----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV-R-----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~-~-----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
..++||||||+... + ...++.+..+.+|+.++..|..++. +.. ...||++||.-.|-
T Consensus 76 ~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~-~a~IInVSSGLafv---------- 144 (245)
T COG3967 76 YPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQP-EATIINVSSGLAFV---------- 144 (245)
T ss_pred CCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CceEEEeccccccC----------
Confidence 57999999998432 1 1233345789999999777766653 333 34999999966542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGP 284 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~ 284 (439)
+......|+++|++.-.+..+++++ .+++|+=+-|+.|-.+
T Consensus 145 --Pm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 145 --PMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred --cccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 2233457999999999998888877 3789998899988765
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=139.35 Aligned_cols=168 Identities=18% Similarity=0.163 Sum_probs=125.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
++++||||+|+||.+++++|+++|+ .|+++.|+...................++.++.+|+++.+++.++++..
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999996 6888888654332221101111112346778999999999988887664
Q ss_pred CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc-cCCCCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV-YGLNTKVPFSEKDRTDQPA 248 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v-~g~~~~~~~~e~~~~~~p~ 248 (439)
++|+|||+||..... ...++++..+++|+.++.++++++++.+.. ++|++||... ++. ...
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~ii~~ss~~~~~~~-------------~~~ 146 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLD-FFVLFSSVAGVLGN-------------PGQ 146 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcc-eEEEEccHHHhcCC-------------CCc
Confidence 469999999974322 223455678999999999999999876644 8999998543 321 345
Q ss_pred ChHHHHHHHHHHHHHHHHhHhCCcEEEEeecccc
Q 013602 249 SLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVY 282 (439)
Q Consensus 249 ~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~ 282 (439)
..|+.+|.+.+.+++.+.. .+++++++.||.+-
T Consensus 147 ~~y~~sk~~~~~~~~~~~~-~~~~~~~~~~g~~~ 179 (180)
T smart00822 147 ANYAAANAFLDALAAHRRA-RGLPATSINWGAWA 179 (180)
T ss_pred hhhHHHHHHHHHHHHHHHh-cCCceEEEeecccc
Confidence 6899999999999976654 59999999998764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=143.91 Aligned_cols=164 Identities=18% Similarity=0.122 Sum_probs=125.4
Q ss_pred CCCEEEEECCC-ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 98 NGISVLVTGAA-GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 98 ~~~~VlItGat-G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
..|.||||||+ |+||.+++++|.+.|+.|++..|..+. ........+++..++|+++++++.++..++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~--------M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEP--------MAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccch--------HhhHHHhhCCeeEEeccCChHHHHHHHHHHhhC
Confidence 45789999987 999999999999999999999994432 112222457999999999999998887665
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+++||||...... +..+.+.++++|+.|..++.+++. ++. +.||++.|..+|-
T Consensus 78 ~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaK--GtIVnvgSl~~~v----------- 144 (289)
T KOG1209|consen 78 PDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAK--GTIVNVGSLAGVV----------- 144 (289)
T ss_pred CCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHcc--ceEEEecceeEEe-----------
Confidence 5799999999854322 233446799999999666666553 443 3999999977753
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYG 283 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G 283 (439)
+..-.+.|.+||+|.-.+.+.++-+ +|++++-+-+|.|-.
T Consensus 145 -pfpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T 187 (289)
T KOG1209|consen 145 -PFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVAT 187 (289)
T ss_pred -ccchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceec
Confidence 2123578999999998888887665 588998888887754
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=141.26 Aligned_cols=200 Identities=18% Similarity=0.100 Sum_probs=139.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHhC-CCeEEEE-ECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRR-GDGVLGL-DNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
.+.|+||||+.+||.-|+++|++. |.+|++. +|+.+.+ ..+........++++.+++|+++.+++.++++++
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a---~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~i 79 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKA---ATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKI 79 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHh---hHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhh
Confidence 467999999999999999999976 5665554 5534332 1111222224679999999999999999888776
Q ss_pred ----CccEEEEcccccCccccccC-----hhHHHHHHHHHHHHH----HHHHHhcCCC----------CeEEEecCCccc
Q 013602 174 ----SFTHVMHLAAQAGVRYAMQN-----PNSYVHSNIAGLVSL----LEVCKNANPQ----------PAIVWASSSSVY 230 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~~~~~-----~~~~~~~Nv~gt~~l----l~~~~~~~~~----------~~~V~~SS~~v~ 230 (439)
..|++|||||+......... ..+.+++|..|+..+ +.+++++... ..||++||.+.-
T Consensus 80 Vg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s 159 (249)
T KOG1611|consen 80 VGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS 159 (249)
T ss_pred cccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc
Confidence 57999999998655433222 347899999995444 4444544311 178999995531
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCce
Q 013602 231 GLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPI 307 (439)
Q Consensus 231 g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~ 307 (439)
.. .....+..+|.+||.|...+.++++-++ ++-++.++||+|-..-+ +..
T Consensus 160 --~~-------~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMg----------------g~~-- 212 (249)
T KOG1611|consen 160 --IG-------GFRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMG----------------GKK-- 212 (249)
T ss_pred --cC-------CCCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCC----------------CCC--
Confidence 11 1122567899999999999999998774 68889999999864311 111
Q ss_pred eecCCCCcceeeeeeHHHHHHHHHHHHhhchh
Q 013602 308 FESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 308 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
.-+.+++-+.-++..+.....
T Consensus 213 -----------a~ltveeSts~l~~~i~kL~~ 233 (249)
T KOG1611|consen 213 -----------AALTVEESTSKLLASINKLKN 233 (249)
T ss_pred -----------cccchhhhHHHHHHHHHhcCc
Confidence 135577888888877776654
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-16 Score=153.39 Aligned_cols=190 Identities=18% Similarity=0.135 Sum_probs=129.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+++|+|+||||+|+||++++++|+++|++|++++|+.+. ... ... .....+..+.+|++|.+++.+.+.++ |
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~----l~~-~~~-~~~~~v~~v~~Dvsd~~~v~~~l~~I--D 247 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDK----ITL-EIN-GEDLPVKTLHWQVGQEAALAELLEKV--D 247 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHH-HHh-hcCCCeEEEEeeCCCHHHHHHHhCCC--C
Confidence 578999999999999999999999999999999984321 111 110 11234678899999999999988765 9
Q ss_pred EEEEcccccCc-cccccChhHHHHHHHHHHHHHHHHHHh----cCC---CCeEEEecCCcccCCCCCCCCCCCCCCCCCC
Q 013602 177 HVMHLAAQAGV-RYAMQNPNSYVHSNIAGLVSLLEVCKN----ANP---QPAIVWASSSSVYGLNTKVPFSEKDRTDQPA 248 (439)
Q Consensus 177 ~Vi~~Ag~~~~-~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~---~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~ 248 (439)
++|||||.... ..+.++.+..+++|+.|+.++++++.+ .+. ...+|++|++.. . + ...
T Consensus 248 iLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-~------------~-~~~ 313 (406)
T PRK07424 248 ILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-N------------P-AFS 313 (406)
T ss_pred EEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-c------------C-CCc
Confidence 99999997432 233445678899999999999888743 221 124566665332 0 1 123
Q ss_pred ChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHH
Q 013602 249 SLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVK 328 (439)
Q Consensus 249 ~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~ 328 (439)
..|++||.+.+.+..-.+.+.++.+..+.||.+..+ . .+. ..+..+|+|+
T Consensus 314 ~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~-----~--------------~~~-----------~~~spe~vA~ 363 (406)
T PRK07424 314 PLYELSKRALGDLVTLRRLDAPCVVRKLILGPFKSN-----L--------------NPI-----------GVMSADWVAK 363 (406)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCceEEEEeCCCcCC-----C--------------CcC-----------CCCCHHHHHH
Confidence 579999999999864332233555555555443211 0 000 1357899999
Q ss_pred HHHHHHhhch
Q 013602 329 GCLAALDTAE 338 (439)
Q Consensus 329 a~~~~l~~~~ 338 (439)
.++.+++...
T Consensus 364 ~il~~i~~~~ 373 (406)
T PRK07424 364 QILKLAKRDF 373 (406)
T ss_pred HHHHHHHCCC
Confidence 9999988665
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-17 Score=141.02 Aligned_cols=154 Identities=22% Similarity=0.211 Sum_probs=116.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
|+|+||||+++||.+++++|+++| +.|+++.|+.+ .+.......+. ....++.++++|+++.++++++++.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~--~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSED--SEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCH--HHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999999999999995 57788888400 01111111111 12367899999999999999888765
Q ss_pred -CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPA 248 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~ 248 (439)
++|+||||||...... ..++.+..+++|+.+...+.+++...+ .++||++||....- +....
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~------------~~~~~ 145 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQG-GGKIVNISSIAGVR------------GSPGM 145 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHT-TEEEEEEEEGGGTS------------SSTTB
T ss_pred ccccccccccccccccccccccchhhhhccccccceeeeeeehheecc-ccceEEecchhhcc------------CCCCC
Confidence 6899999999866322 234456899999999999999988844 44999999976531 22345
Q ss_pred ChHHHHHHHHHHHHHHHHhH
Q 013602 249 SLYAATKKAGEEIAHTYNHI 268 (439)
Q Consensus 249 ~~Y~~sK~a~E~~~~~~~~~ 268 (439)
..|+.+|.+.+.+++.+++|
T Consensus 146 ~~Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 146 SAYSASKAALRGLTQSLAAE 165 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999887
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=144.35 Aligned_cols=168 Identities=21% Similarity=0.220 Sum_probs=129.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
..||++++||+.|+||.++.++|+++|..+.+++.+.++ .......+.......+.|+++|+++..+++++++++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En--~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~ 80 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEEN--PEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT 80 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhC--HHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHH
Confidence 568999999999999999999999999988888765543 111122233345568999999999999999999876
Q ss_pred --CccEEEEcccccCccccccChhHHHHHHHHH----HHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAG----LVSLLEVCKNAN--PQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~g----t~~ll~~~~~~~--~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
.+|++||+||+.. +.+.+.++++|+.| |...++...+.. ...-||++||..-.. +.
T Consensus 81 fg~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~------------P~ 144 (261)
T KOG4169|consen 81 FGTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLD------------PM 144 (261)
T ss_pred hCceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccC------------cc
Confidence 7899999999854 57889999999999 445555554332 334999999954321 21
Q ss_pred CCCChHHHHHHHHHHHHHHHHhH-----hCCcEEEEeecccc
Q 013602 246 QPASLYAATKKAGEEIAHTYNHI-----YGLSLTGLRFFTVY 282 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~-----~gi~~~ilrpg~v~ 282 (439)
.-...|++||+....|.++++.. .|+++..++||.+-
T Consensus 145 p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~ 186 (261)
T KOG4169|consen 145 PVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTR 186 (261)
T ss_pred ccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcch
Confidence 33568999999999999996654 49999999999763
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-16 Score=149.18 Aligned_cols=231 Identities=10% Similarity=-0.006 Sum_probs=139.4
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCC---------CCCChhHH------------HHHHHhhhcCCe
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFN---------DYYDPSLK------------KARQALLERSGI 153 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~---------~~~~~~~~------------~~~~~~~~~~~v 153 (439)
.++|+++||||. .+||+++++.|+++|++|++.++.. +....... +......+-...
T Consensus 6 ~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~ 85 (299)
T PRK06300 6 LTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDTP 85 (299)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCCC
Confidence 678999999995 9999999999999999999977531 00000000 000000000112
Q ss_pred EEEEcccCC--------HHHHHHhhccc-----CccEEEEcccccCc------cccccChhHHHHHHHHHHHHHHHHHHh
Q 013602 154 FIVEGDIND--------MALLKKLFDVV-----SFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAGLVSLLEVCKN 214 (439)
Q Consensus 154 ~~~~~Dl~d--------~~~~~~~~~~~-----~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~~~ 214 (439)
+-+..|+.+ .++++++++.+ ++|++|||||.... ..+.++++..+++|+.|+.++.+++.+
T Consensus 86 ~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p 165 (299)
T PRK06300 86 EDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGP 165 (299)
T ss_pred EEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 222222222 12455555443 58999999986321 123455678999999999888888764
Q ss_pred cC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhHh----CCcEEEEeeccccCCCCCC
Q 013602 215 AN-PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPA-SLYAATKKAGEEIAHTYNHIY----GLSLTGLRFFTVYGPWGRP 288 (439)
Q Consensus 215 ~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~-~~Y~~sK~a~E~~~~~~~~~~----gi~~~ilrpg~v~G~~~~~ 288 (439)
.- ...++|++||....- ..... ..|+.+|.+.+.+++.++.++ |+++++|.||.|..+-...
T Consensus 166 ~m~~~G~ii~iss~~~~~------------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~~ 233 (299)
T PRK06300 166 IMNPGGSTISLTYLASMR------------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGKA 233 (299)
T ss_pred HhhcCCeEEEEeehhhcC------------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhhc
Confidence 32 123899998855321 10122 379999999999999998873 7999999999987653210
Q ss_pred CChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 289 DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.............. .+. ..+...+|++.++++++...... ..|+++.+.++
T Consensus 234 ~~~~~~~~~~~~~~--~p~----------~r~~~peevA~~v~~L~s~~~~~----------itG~~i~vdGG 284 (299)
T PRK06300 234 IGFIERMVDYYQDW--APL----------PEPMEAEQVGAAAAFLVSPLASA----------ITGETLYVDHG 284 (299)
T ss_pred ccccHHHHHHHHhc--CCC----------CCCcCHHHHHHHHHHHhCccccC----------CCCCEEEECCC
Confidence 00000111111111 111 12456799999999987654321 23477777654
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=149.66 Aligned_cols=218 Identities=16% Similarity=0.151 Sum_probs=151.0
Q ss_pred CCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc------CccE
Q 013602 106 GAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV------SFTH 177 (439)
Q Consensus 106 Gat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~------~~d~ 177 (439)
|++ ++||.+++++|+++|++|++.+|+.+.. .....+.....+..++.+|++|.++++++++.+ ++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~----~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKL----ADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHH----HHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHH----HHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 666 9999999999999999999999944311 111222223334557999999999998887663 6899
Q ss_pred EEEcccccCc----c----ccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCCC
Q 013602 178 VMHLAAQAGV----R----YAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPA 248 (439)
Q Consensus 178 Vi~~Ag~~~~----~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~ 248 (439)
+|||+|.... . .+.+++...+++|+.++..+++++.+.- ...++|++||..... +....
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~------------~~~~~ 144 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR------------PMPGY 144 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS------------BSTTT
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc------------cCccc
Confidence 9999997554 1 1234556789999999888888774321 012899999876432 11345
Q ss_pred ChHHHHHHHHHHHHHHHHhH----hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 249 SLYAATKKAGEEIAHTYNHI----YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 249 ~~Y~~sK~a~E~~~~~~~~~----~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
..|+.+|.+.+.+++.++.+ +||++++|.||.|..+..........+.....+..+... +...+
T Consensus 145 ~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl~r------------~~~~~ 212 (241)
T PF13561_consen 145 SAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPLGR------------LGTPE 212 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTTSS------------HBEHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhccccccchhhhhhhhhccCC------------CcCHH
Confidence 69999999999999998876 379999999999986521100011223333333333322 45789
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
|+|.+++.++...... ..|+++.+.+|
T Consensus 213 evA~~v~fL~s~~a~~----------itG~~i~vDGG 239 (241)
T PF13561_consen 213 EVANAVLFLASDAASY----------ITGQVIPVDGG 239 (241)
T ss_dssp HHHHHHHHHHSGGGTT----------GTSEEEEESTT
T ss_pred HHHHHHHHHhCccccC----------ccCCeEEECCC
Confidence 9999999998766432 34588888765
|
... |
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-16 Score=144.37 Aligned_cols=173 Identities=21% Similarity=0.201 Sum_probs=128.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhc--CCeEEEEcccCC-HHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLER--SGIFIVEGDIND-MALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~v~~~~~Dl~d-~~~~~~~~~~~ 173 (439)
+.+|+||||||+++||.++++.|+++|++|+++.|..... ............ ..+.+..+|+++ .++++.+++..
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~ 80 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEE--AAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAA 80 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchh--hHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999998855432 001111100011 367788899998 98888777664
Q ss_pred -----CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||.... ....++.+..+++|+.|...+.+++......++||++||.... ..
T Consensus 81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~---------- 149 (251)
T COG1028 81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GG---------- 149 (251)
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CC----------
Confidence 47999999998542 2234566789999999988877755433222399999997753 11
Q ss_pred CCCC-CChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCC
Q 013602 244 TDQP-ASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGP 284 (439)
Q Consensus 244 ~~~p-~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~ 284 (439)
.+ ...|+.||++.+.+.+.++.+ +|++++.|.||.+-.+
T Consensus 150 --~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~ 192 (251)
T COG1028 150 --PPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP 192 (251)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence 22 479999999999999999866 4899999999966544
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.9e-15 Score=139.84 Aligned_cols=223 Identities=24% Similarity=0.228 Sum_probs=164.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
++||||||||++|++++++|+++|++|+++.|+.+ ...... .++++..+|+.+.+++..+++++ |.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~---------~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~--~~~~ 68 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPE---------AAAALA-GGVEVVLGDLRDPKSLVAGAKGV--DGVL 68 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHH---------HHHhhc-CCcEEEEeccCCHhHHHHHhccc--cEEE
Confidence 47999999999999999999999999999999332 222222 79999999999999999999999 9988
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
++.+... . . . ......+....+..+.+. .+ .++++.+|..... ......|..+|...|
T Consensus 69 ~i~~~~~-~---~-~-~~~~~~~~~~~~~a~~a~-~~-~~~~~~~s~~~~~--------------~~~~~~~~~~~~~~e 126 (275)
T COG0702 69 LISGLLD-G---S-D-AFRAVQVTAVVRAAEAAG-AG-VKHGVSLSVLGAD--------------AASPSALARAKAAVE 126 (275)
T ss_pred EEecccc-c---c-c-chhHHHHHHHHHHHHHhc-CC-ceEEEEeccCCCC--------------CCCccHHHHHHHHHH
Confidence 8877532 1 1 1 222333334444444444 22 2388888876641 134578999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHH-cCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL-NRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
..+.+ .|+.++++|+..+|..... .+..... .+.+.... +....+++..+|++.++...+..+.
T Consensus 127 ~~l~~----sg~~~t~lr~~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~~~~~i~~~d~a~~~~~~l~~~~ 191 (275)
T COG0702 127 AALRS----SGIPYTTLRRAAFYLGAGA------AFIEAAEAAGLPVIPR-----GIGRLSPIAVDDVAEALAAALDAPA 191 (275)
T ss_pred HHHHh----cCCCeEEEecCeeeeccch------hHHHHHHhhCCceecC-----CCCceeeeEHHHHHHHHHHHhcCCc
Confidence 99988 4999999997776655432 1132333 33333332 2237889999999999999998776
Q ss_pred hccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccc
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR 383 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~ 383 (439)
. .+++|.+++++..+..++.+.+.+..|.+...
T Consensus 192 ~------------~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~ 224 (275)
T COG0702 192 T------------AGRTYELAGPEALTLAELASGLDYTIGRPVGL 224 (275)
T ss_pred c------------cCcEEEccCCceecHHHHHHHHHHHhCCccee
Confidence 3 23899999999999999999999999987665
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-15 Score=137.80 Aligned_cols=210 Identities=16% Similarity=0.127 Sum_probs=150.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----C
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-----S 174 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 174 (439)
.+|+||||+.+||..++.++..+|++|++..|+..+..+......... ....|.+..+|+.|.+++.+.+++. .
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~-~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLT-QVEDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhh-ccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 689999999999999999999999999999995543222222111111 1123779999999999999999887 6
Q ss_pred ccEEEEcccccCcccccc----ChhHHHHHHHHHHHHHHHHHHhcC----CCCeEEEecCC-cccCCCCCCCCCCCCCCC
Q 013602 175 FTHVMHLAAQAGVRYAMQ----NPNSYVHSNIAGLVSLLEVCKNAN----PQPAIVWASSS-SVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~~~~~~----~~~~~V~~SS~-~v~g~~~~~~~~e~~~~~ 245 (439)
+|.+|||||.......++ ..+..+++|..|+.|+++++.... ...+|+.+||. +.++ .
T Consensus 113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~-------------i 179 (331)
T KOG1210|consen 113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLG-------------I 179 (331)
T ss_pred cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcC-------------c
Confidence 899999999876654433 345789999999999998874332 12288888884 3332 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
...+.|+.+|.+...+..++++| +|+.++..-|+.+-.|+..... ..+-....... ...+.+.
T Consensus 180 ~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En--------~tkP~~t~ii~------g~ss~~~ 245 (331)
T KOG1210|consen 180 YGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFEREN--------KTKPEETKIIE------GGSSVIK 245 (331)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcccccc--------ccCchheeeec------CCCCCcC
Confidence 45789999999999999999888 4899999999999988654211 11111112221 1123477
Q ss_pred HHHHHHHHHHHHhhc
Q 013602 323 IDDIVKGCLAALDTA 337 (439)
Q Consensus 323 v~Dva~a~~~~l~~~ 337 (439)
-+++|++++.=+...
T Consensus 246 ~e~~a~~~~~~~~rg 260 (331)
T KOG1210|consen 246 CEEMAKAIVKGMKRG 260 (331)
T ss_pred HHHHHHHHHhHHhhc
Confidence 799999998766543
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=139.86 Aligned_cols=207 Identities=14% Similarity=0.067 Sum_probs=140.1
Q ss_pred HHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--CccEEEEcccccCcccccc
Q 013602 115 VSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--SFTHVMHLAAQAGVRYAMQ 192 (439)
Q Consensus 115 l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d~Vi~~Ag~~~~~~~~~ 192 (439)
++++|+++|++|++++|+.... . ...++++|++|.++++++++.. ++|+||||||... ..
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~---------~-----~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~ 62 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGM---------T-----LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TA 62 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchh---------h-----hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CC
Confidence 4789999999999999954321 0 1346789999999999999875 6899999999742 25
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCC---------------CCCCCCCChHHHHHH
Q 013602 193 NPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEK---------------DRTDQPASLYAATKK 256 (439)
Q Consensus 193 ~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~---------------~~~~~p~~~Y~~sK~ 256 (439)
+++..+++|+.++.++++++.+.- ..++||++||...|+.....+..+. ..+..+...|+.+|.
T Consensus 63 ~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 142 (241)
T PRK12428 63 PVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKE 142 (241)
T ss_pred CHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHH
Confidence 678899999999999999987541 1249999999888763221111110 012234678999999
Q ss_pred HHHHHHHHHH-hH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHH
Q 013602 257 AGEEIAHTYN-HI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLA 332 (439)
Q Consensus 257 a~E~~~~~~~-~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 332 (439)
+.+.+++.++ .+ .|+++++|+||.|.++-.... ..............+ ...+...+|+|.+++.
T Consensus 143 a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~pe~va~~~~~ 210 (241)
T PRK12428 143 ALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDF--RSMLGQERVDSDAKR----------MGRPATADEQAAVLVF 210 (241)
T ss_pred HHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccc--hhhhhhHhhhhcccc----------cCCCCCHHHHHHHHHH
Confidence 9999999988 54 489999999999988743210 000000000000001 1124668999999999
Q ss_pred HHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 333 ALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
++...... ..|+.+.+.++
T Consensus 211 l~s~~~~~----------~~G~~i~vdgg 229 (241)
T PRK12428 211 LCSDAARW----------INGVNLPVDGG 229 (241)
T ss_pred HcChhhcC----------ccCcEEEecCc
Confidence 87544321 23466766554
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=123.27 Aligned_cols=165 Identities=19% Similarity=0.201 Sum_probs=115.3
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----C
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-----S 174 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 174 (439)
++|||||+|+||..+++.|+++|. +|+++.|..............-......+.++++|++|+++++++++.. +
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 699999999999999999999985 8999999632111221111221222457899999999999999999876 5
Q ss_pred ccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC-cccCCCCCCCCCCCCCCCCCCC
Q 013602 175 FTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSS-SVYGLNTKVPFSEKDRTDQPAS 249 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~-~v~g~~~~~~~~e~~~~~~p~~ 249 (439)
++.|||+||..... .+.+.....+..-+.|+.+|.+++...... .||.+||. +++|. ....
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~-~~i~~SSis~~~G~-------------~gq~ 147 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLD-FFILFSSISSLLGG-------------PGQS 147 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTS-EEEEEEEHHHHTT--------------TTBH
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCC-eEEEECChhHhccC-------------cchH
Confidence 78899999975322 233445578888999999999999887755 99999995 45553 3468
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCcEEEEeecc
Q 013602 250 LYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~ 280 (439)
.|+.+-...+.+++..+. .|.++.+|.-|.
T Consensus 148 ~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~ 177 (181)
T PF08659_consen 148 AYAAANAFLDALARQRRS-RGLPAVSINWGA 177 (181)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTSEEEEEEE-E
T ss_pred hHHHHHHHHHHHHHHHHh-CCCCEEEEEccc
Confidence 999999999999887655 489998888654
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-14 Score=123.39 Aligned_cols=273 Identities=17% Similarity=0.125 Sum_probs=181.0
Q ss_pred CCCEEEEECCCChHHHHHHH-----HHHhCC----CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH-HHH
Q 013602 98 NGISVLVTGAAGFVGTHVSA-----ALKRRG----DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA-LLK 167 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~-----~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~-~~~ 167 (439)
.++..++-+++|+|+..|.. ++-+.+ |.|+++.|...+ .++.+-..|..-.. +..
T Consensus 11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~---------------~ritw~el~~~Gip~sc~ 75 (315)
T KOG3019|consen 11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGK---------------ARITWPELDFPGIPISCV 75 (315)
T ss_pred ccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCC---------------cccccchhcCCCCceehH
Confidence 44567888999999988877 555555 899999994432 22333333222110 111
Q ss_pred HhhcccCccEEEEcccccCccccccChhHHHHHHHHH-----HHHHHHHHHhcCCC-CeEEEecCCcccCCCCCCCCCCC
Q 013602 168 KLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAG-----LVSLLEVCKNANPQ-PAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 168 ~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~g-----t~~ll~~~~~~~~~-~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
+ .+ +.+.+|+.. +..-+...++-|+.| |..|.++.+++... +.+|.+|..++|-......++|+
T Consensus 76 a---~v--na~g~n~l~-----P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~ 145 (315)
T KOG3019|consen 76 A---GV--NAVGNNALL-----PIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEK 145 (315)
T ss_pred H---HH--hhhhhhccC-----chhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccc
Confidence 1 01 223333332 112334456666666 88899999877643 38999999999988877888888
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHH--HHHHcCCCCceeecCCCCcceee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFT--RDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
+.. ........--++.|..++...+ .+++.+||.|.|.|.++..- ..|+ -.+-.|+++ |+|++++.
T Consensus 146 ~~~-qgfd~~srL~l~WE~aA~~~~~--~~r~~~iR~GvVlG~gGGa~---~~M~lpF~~g~GGPl------GsG~Q~fp 213 (315)
T KOG3019|consen 146 IVH-QGFDILSRLCLEWEGAALKANK--DVRVALIRIGVVLGKGGGAL---AMMILPFQMGAGGPL------GSGQQWFP 213 (315)
T ss_pred ccc-CChHHHHHHHHHHHHHhhccCc--ceeEEEEEEeEEEecCCcch---hhhhhhhhhccCCcC------CCCCeeee
Confidence 765 5555666656677777666554 58999999999999877521 1121 122334443 78999999
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCC------C-
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN------G- 392 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~------~- 392 (439)
|||++|++..+..+++++... ++.|-+.+++++..|+.+.+.+.++++.-+ |.|.. +
T Consensus 214 WIHv~DL~~li~~ale~~~v~-------------GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~---pvP~fvvqA~fG~ 277 (315)
T KOG3019|consen 214 WIHVDDLVNLIYEALENPSVK-------------GVINGVAPNPVRNGEFCQQLGSALSRPSWL---PVPDFVVQALFGP 277 (315)
T ss_pred eeehHHHHHHHHHHHhcCCCC-------------ceecccCCCccchHHHHHHHHHHhCCCccc---CCcHHHHHHHhCc
Confidence 999999999999999987754 799999999999999999999999976433 33321 1
Q ss_pred CCCcccCCh-----HHHHHHcCCCccCc-HHHHHHHHH
Q 013602 393 DVPFTHANI-----SLAQRELGYKPTTD-LQTGLKKFV 424 (439)
Q Consensus 393 ~~~~~~~d~-----~k~~~~LG~~p~~~-l~e~l~~~v 424 (439)
+.....+.. .|+ .++||+.+++ +.+++++.+
T Consensus 278 erA~~vLeGqKV~Pqra-l~~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 278 ERATVVLEGQKVLPQRA-LELGFEFKYPYVKDALRAIM 314 (315)
T ss_pred cceeEEeeCCcccchhH-hhcCceeechHHHHHHHHHh
Confidence 111112222 333 4689998875 577777654
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=160.67 Aligned_cols=173 Identities=16% Similarity=0.129 Sum_probs=132.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCC----------hh---------------------------
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYD----------PS--------------------------- 139 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~----------~~--------------------------- 139 (439)
.+++||||||+++||.+++++|+++ |++|++++|+..... ..
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 5789999999999999999999998 699999999721000 00
Q ss_pred ---HHHHH--HHhh--hcCCeEEEEcccCCHHHHHHhhccc----CccEEEEcccccCc----cccccChhHHHHHHHHH
Q 013602 140 ---LKKAR--QALL--ERSGIFIVEGDINDMALLKKLFDVV----SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAG 204 (439)
Q Consensus 140 ---~~~~~--~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~g 204 (439)
..+.. .... ....+.++.+|++|.++++++++.+ ++|+||||||+... ..+.+++...+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 00000 0111 1246889999999999999888765 58999999997543 23455677899999999
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCc-ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh-CCcEEEEeecccc
Q 013602 205 LVSLLEVCKNANPQPAIVWASSSS-VYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTGLRFFTVY 282 (439)
Q Consensus 205 t~~ll~~~~~~~~~~~~V~~SS~~-v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~-gi~~~ilrpg~v~ 282 (439)
+.++++++...... +||++||.. .||. .....|+.+|.+.+.+.+.++.+. ++++++|.||.+-
T Consensus 2156 ~~~Ll~al~~~~~~-~IV~~SSvag~~G~-------------~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wd 2221 (2582)
T TIGR02813 2156 LLSLLAALNAENIK-LLALFSSAAGFYGN-------------TGQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWD 2221 (2582)
T ss_pred HHHHHHHHHHhCCC-eEEEEechhhcCCC-------------CCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeec
Confidence 99999999876643 899999954 3442 345789999999999999988875 6899999999887
Q ss_pred CC
Q 013602 283 GP 284 (439)
Q Consensus 283 G~ 284 (439)
|+
T Consensus 2222 tg 2223 (2582)
T TIGR02813 2222 GG 2223 (2582)
T ss_pred CC
Confidence 65
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=128.41 Aligned_cols=172 Identities=16% Similarity=0.127 Sum_probs=127.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhc--CCeEEEEcccCCHHH----HHHhhc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLER--SGIFIVEGDINDMAL----LKKLFD 171 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~v~~~~~Dl~d~~~----~~~~~~ 171 (439)
.|.-+.|||||.+||++.+++|++||.+|++++|+.++.+.. .++..+. -.+.++..|.++.+. +.+.+.
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v----~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~ 123 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAV----AKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLA 123 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHH----HHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhc
Confidence 347899999999999999999999999999999955533222 2233332 457888999997664 667777
Q ss_pred ccCccEEEEcccccCc--ccc----ccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 172 VVSFTHVMHLAAQAGV--RYA----MQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~~~~--~~~----~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
+..+.++|||+|.... ... .......+.+|+.++..+.+...... ..+.||++||.+-.
T Consensus 124 ~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~------------ 191 (312)
T KOG1014|consen 124 GLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL------------ 191 (312)
T ss_pred CCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc------------
Confidence 7778889999998652 111 11234678899999777766664332 13389999996531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPW 285 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~ 285 (439)
.+.+-.+.|+++|...+.+...+.+|+ |+.+-.+-|..|-++-
T Consensus 192 ~p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm 237 (312)
T KOG1014|consen 192 IPTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKM 237 (312)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccc
Confidence 122346899999999999999998885 8999999999988763
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-15 Score=124.15 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=131.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
.++-..+||||.+++|+..++.|+++|+.|.+++.-.+++....++ -..++.|..+|+++++.++.++...
T Consensus 7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vake------lg~~~vf~padvtsekdv~aala~ak~k 80 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKE------LGGKVVFTPADVTSEKDVRAALAKAKAK 80 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHH------hCCceEEeccccCcHHHHHHHHHHHHhh
Confidence 4677899999999999999999999999999999855544333221 2357899999999999999988765
Q ss_pred --CccEEEEcccccCcc----------ccccChhHHHHHHHHHHHHHHHHHH---------hcCCCCeEEEecCCcccCC
Q 013602 174 --SFTHVMHLAAQAGVR----------YAMQNPNSYVHSNIAGLVSLLEVCK---------NANPQPAIVWASSSSVYGL 232 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----------~~~~~~~~~~~~Nv~gt~~ll~~~~---------~~~~~~~~V~~SS~~v~g~ 232 (439)
+.|..+||||+.... +..+++.+.+++|+.||.|+++... +.|....||++.|.+.|..
T Consensus 81 fgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdg 160 (260)
T KOG1199|consen 81 FGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDG 160 (260)
T ss_pred ccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecC
Confidence 789999999974321 2245667889999999999998753 1222337888888887753
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCC
Q 013602 233 NTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGP 284 (439)
Q Consensus 233 ~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~ 284 (439)
+ .....|++||.+...+..-.++.+ |++++.+-||..-.|
T Consensus 161 q------------~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tp 203 (260)
T KOG1199|consen 161 Q------------TGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTP 203 (260)
T ss_pred c------------cchhhhhcccCceEeeechhhhhcccCceEEEeecccccCCh
Confidence 2 245789999999888766666653 899999999987655
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=126.98 Aligned_cols=217 Identities=20% Similarity=0.152 Sum_probs=131.3
Q ss_pred cccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH-HHHHHhhcc
Q 013602 94 VRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM-ALLKKLFDV 172 (439)
Q Consensus 94 ~~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~~~~~~~~ 172 (439)
..+.+.++|||+||||.+|+-+++.|+++|+.|+++.|+......... ......+...+..|...+ +.+..+.+.
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~----~~~~d~~~~~v~~~~~~~~d~~~~~~~~ 149 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG----VFFVDLGLQNVEADVVTAIDILKKLVEA 149 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc----ccccccccceeeeccccccchhhhhhhh
Confidence 334566899999999999999999999999999999995432211111 112234566666665544 344444444
Q ss_pred cC--ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCCh
Q 013602 173 VS--FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 250 (439)
Q Consensus 173 ~~--~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~ 250 (439)
+. ..+++-++|-.. ..+ +-..-..+...|+.|++++|+.+|.. |||++||++.-- ... ..........
T Consensus 150 ~~~~~~~v~~~~ggrp--~~e-d~~~p~~VD~~g~knlvdA~~~aGvk-~~vlv~si~~~~--~~~----~~~~~~~~~~ 219 (411)
T KOG1203|consen 150 VPKGVVIVIKGAGGRP--EEE-DIVTPEKVDYEGTKNLVDACKKAGVK-RVVLVGSIGGTK--FNQ----PPNILLLNGL 219 (411)
T ss_pred ccccceeEEecccCCC--Ccc-cCCCcceecHHHHHHHHHHHHHhCCc-eEEEEEeecCcc--cCC----Cchhhhhhhh
Confidence 42 234555554321 111 22234467888999999999999976 999999877521 100 0000001234
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 251 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 251 Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
+-.+|+.+|.++++ .|+++++|||+...-....... ......-..+ ..+..--.+.-.|+|+.+
T Consensus 220 ~~~~k~~~e~~~~~----Sgl~ytiIR~g~~~~~~~~~~~--------~~~~~~~~~~----~~~~~~~~i~r~~vael~ 283 (411)
T KOG1203|consen 220 VLKAKLKAEKFLQD----SGLPYTIIRPGGLEQDTGGQRE--------VVVDDEKELL----TVDGGAYSISRLDVAELV 283 (411)
T ss_pred hhHHHHhHHHHHHh----cCCCcEEEeccccccCCCCcce--------ecccCccccc----cccccceeeehhhHHHHH
Confidence 55888888888775 6999999999987543221000 0001111111 111111356678999999
Q ss_pred HHHHhhchhc
Q 013602 331 LAALDTAEKS 340 (439)
Q Consensus 331 ~~~l~~~~~~ 340 (439)
+.++.+....
T Consensus 284 ~~all~~~~~ 293 (411)
T KOG1203|consen 284 AKALLNEAAT 293 (411)
T ss_pred HHHHhhhhhc
Confidence 9998877754
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.6e-12 Score=106.77 Aligned_cols=202 Identities=16% Similarity=0.147 Sum_probs=141.0
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|.|.||||-+|++++++..+|||+|+++.|+..+. ...+++..++.|+.|++++.+.+.++ |+||
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~-----------~~~~~~~i~q~Difd~~~~a~~l~g~--DaVI 67 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKL-----------AARQGVTILQKDIFDLTSLASDLAGH--DAVI 67 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhc-----------cccccceeecccccChhhhHhhhcCC--ceEE
Confidence 6899999999999999999999999999999944311 11268889999999999999999998 9999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC-CCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG-LNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g-~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
..-+.... ++.... ......|++.++.++.. |++.+..++... +...... |.+..|...|..++..+
T Consensus 68 sA~~~~~~----~~~~~~----~k~~~~li~~l~~agv~-RllVVGGAGSL~id~g~rLv---D~p~fP~ey~~~A~~~a 135 (211)
T COG2910 68 SAFGAGAS----DNDELH----SKSIEALIEALKGAGVP-RLLVVGGAGSLEIDEGTRLV---DTPDFPAEYKPEALAQA 135 (211)
T ss_pred EeccCCCC----ChhHHH----HHHHHHHHHHHhhcCCe-eEEEEcCccceEEcCCceee---cCCCCchhHHHHHHHHH
Confidence 86654211 111111 11266788888888855 998888755432 2221111 22335566677777666
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
|. +..++.+.++.|+.|-|...|-|+.+.+. +.-|+..... ...--++|..+|.|-+++.-++.+.
T Consensus 136 e~-L~~Lr~~~~l~WTfvSPaa~f~PGerTg~--------yrlggD~ll~-----n~~G~SrIS~aDYAiA~lDe~E~~~ 201 (211)
T COG2910 136 EF-LDSLRAEKSLDWTFVSPAAFFEPGERTGN--------YRLGGDQLLV-----NAKGESRISYADYAIAVLDELEKPQ 201 (211)
T ss_pred HH-HHHHhhccCcceEEeCcHHhcCCccccCc--------eEeccceEEE-----cCCCceeeeHHHHHHHHHHHHhccc
Confidence 64 45566666799999999999999765332 2334444333 1222368999999999999999887
Q ss_pred hc
Q 013602 339 KS 340 (439)
Q Consensus 339 ~~ 340 (439)
..
T Consensus 202 h~ 203 (211)
T COG2910 202 HI 203 (211)
T ss_pred cc
Confidence 53
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.4e-12 Score=111.75 Aligned_cols=181 Identities=14% Similarity=0.114 Sum_probs=127.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-----eEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-----GVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-----~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
.|.+||||++++||..|+.+|++... .+++.||+.++.+..-.....-.. ...+++++.+|+++-.++.++.++
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~d 82 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKD 82 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHH
Confidence 47899999999999999999998754 588889977755444333222222 135789999999999999988877
Q ss_pred c-----CccEEEEcccccCccc-------------------------------cccChhHHHHHHHHHHHHHHHHHH---
Q 013602 173 V-----SFTHVMHLAAQAGVRY-------------------------------AMQNPNSYVHSNIAGLVSLLEVCK--- 213 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~~-------------------------------~~~~~~~~~~~Nv~gt~~ll~~~~--- 213 (439)
. ++|.|+-|||+..... +.++....++.||+|...+++.+.
T Consensus 83 i~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll 162 (341)
T KOG1478|consen 83 IKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLL 162 (341)
T ss_pred HHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHh
Confidence 5 6899999999753211 124445689999999777666543
Q ss_pred hcCCCCeEEEecCCcccCCCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccC
Q 013602 214 NANPQPAIVWASSSSVYGLNTKVPFSEKD-RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYG 283 (439)
Q Consensus 214 ~~~~~~~~V~~SS~~v~g~~~~~~~~e~~-~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G 283 (439)
-++..+.+|++||...- +..++=+| .......+|..||.+.+.+-.+..+.+ |+.-.++.||....
T Consensus 163 ~~~~~~~lvwtSS~~a~----kk~lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt 232 (341)
T KOG1478|consen 163 CHSDNPQLVWTSSRMAR----KKNLSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTT 232 (341)
T ss_pred hcCCCCeEEEEeecccc----cccCCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeec
Confidence 23333499999995531 11122111 122456789999999998877776653 78888899987543
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-12 Score=110.41 Aligned_cols=171 Identities=19% Similarity=0.121 Sum_probs=112.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
.++.+||||++.+||..++..+..++.+.....+...... .+ ..............+|++....+.++++..
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~--~~--~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~ 80 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE--LE--GLKVAYGDDFVHVVGDITEEQLLGALREAPRKKG 80 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc--cc--ceEEEecCCcceechHHHHHHHHHHHHhhhhhcC
Confidence 3578999999999999999999888865444333111100 00 000000012223445555555444444322
Q ss_pred -CccEEEEcccccCcc-------ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR-------YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~-------~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
+.|+||||||..+.- ...+.+..+++.|++....|...+. +....+-+|++||.+..
T Consensus 81 gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav----------- 149 (253)
T KOG1204|consen 81 GKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAV----------- 149 (253)
T ss_pred CceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhh-----------
Confidence 579999999975431 1223456899999999777766553 34334589999996542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGP 284 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~ 284 (439)
.+...+..|+.+|+|-+.+.+.++.|- ++++..++||.|-.+
T Consensus 150 -~p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~ 193 (253)
T KOG1204|consen 150 -RPFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQ 193 (253)
T ss_pred -ccccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccch
Confidence 133557899999999999999987763 899999999998765
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=101.12 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=82.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+++||||+++||..+++.|+++|++|++.+|+.+. ......+.. ....+.++.+|++|.+++.++++..
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~ 89 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQES----GQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLN 89 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999984321 111111111 1235678899999999988876542
Q ss_pred ---CccEEEEcccccCccccc-c-ChhHHHHHHHHH----HHHHHHHHHhcC------CCCeEEEecCCcc
Q 013602 174 ---SFTHVMHLAAQAGVRYAM-Q-NPNSYVHSNIAG----LVSLLEVCKNAN------PQPAIVWASSSSV 229 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~~~-~-~~~~~~~~Nv~g----t~~ll~~~~~~~------~~~~~V~~SS~~v 229 (439)
++|++|||||........ + ..+....+|+.+ +..+.....+.+ ..+||..+||.+.
T Consensus 90 ~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 90 AFSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred HcCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 689999999975432211 1 111222334444 333333333322 2347888887543
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.2e-11 Score=99.61 Aligned_cols=157 Identities=15% Similarity=0.087 Sum_probs=119.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
+.+|.++|.||||-.|+.+++++++.+ -+|+++.|.... .......+.....|....++....+++.
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~----------d~at~k~v~q~~vDf~Kl~~~a~~~qg~- 84 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELP----------DPATDKVVAQVEVDFSKLSQLATNEQGP- 84 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCC----------CccccceeeeEEechHHHHHHHhhhcCC-
Confidence 678999999999999999999999998 499999983311 1112235666777887777777777766
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|+.|++-|..... ...+..+.+.+.-...+.++++..|+. +|+.+||.+.- + .....|-+.
T Consensus 85 -dV~FcaLgTTRgk---aGadgfykvDhDyvl~~A~~AKe~Gck-~fvLvSS~GAd-------------~-sSrFlY~k~ 145 (238)
T KOG4039|consen 85 -DVLFCALGTTRGK---AGADGFYKVDHDYVLQLAQAAKEKGCK-TFVLVSSAGAD-------------P-SSRFLYMKM 145 (238)
T ss_pred -ceEEEeecccccc---cccCceEeechHHHHHHHHHHHhCCCe-EEEEEeccCCC-------------c-ccceeeeec
Confidence 9999988753322 334456667777778899999999965 99999998851 1 345689999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCC
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWG 286 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~ 286 (439)
|-..|.-+.++.-+ +++|+|||.+.|...
T Consensus 146 KGEvE~~v~eL~F~---~~~i~RPG~ll~~R~ 174 (238)
T KOG4039|consen 146 KGEVERDVIELDFK---HIIILRPGPLLGERT 174 (238)
T ss_pred cchhhhhhhhcccc---EEEEecCcceecccc
Confidence 99999988886332 678999999998654
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=90.93 Aligned_cols=227 Identities=12% Similarity=0.082 Sum_probs=144.0
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhc-CCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLER-SGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
++||++||+|-. ..|+..+++.|.++|+++....... ...+...+.... ..-.+++||++|.+++.++|+.+
T Consensus 4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-----~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i 78 (259)
T COG0623 4 LEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-----RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATI 78 (259)
T ss_pred cCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-----HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHH
Confidence 789999999964 6899999999999999998887522 222222222222 23467999999999999999876
Q ss_pred -----CccEEEEcccccCccc--------cccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVRY--------AMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~~--------~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|.|||+.|...-.. +.+++...+++-......+.++++.... ...+|-+|=.+ .
T Consensus 79 ~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlg---s------- 148 (259)
T COG0623 79 KKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLG---S------- 148 (259)
T ss_pred HHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEecc---c-------
Confidence 6899999999865321 1222333444444445566666654321 12666555221 1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
....+..+..+.+|++.|.-++-++.+. |++++.|--|-|-.--...-..+..++...-..-++
T Consensus 149 --~r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl----------- 215 (259)
T COG0623 149 --ERVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPL----------- 215 (259)
T ss_pred --eeecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCc-----------
Confidence 0122346789999999999999998875 688888877665221100001122222222222222
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+--+..+||+..-+.++...... ..|++.++.+|-
T Consensus 216 -~r~vt~eeVG~tA~fLlSdLssg----------iTGei~yVD~G~ 250 (259)
T COG0623 216 -RRNVTIEEVGNTAAFLLSDLSSG----------ITGEIIYVDSGY 250 (259)
T ss_pred -cCCCCHHHhhhhHHHHhcchhcc----------cccceEEEcCCc
Confidence 22356899999988888776643 345888887764
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-10 Score=98.82 Aligned_cols=207 Identities=16% Similarity=0.075 Sum_probs=140.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
-.+++.|++||.|+++.+.-...|+.|.++.|+..+ .........+.+.++|....+-+....... ..++
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k--------~~l~sw~~~vswh~gnsfssn~~k~~l~g~--t~v~ 122 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENK--------QTLSSWPTYVSWHRGNSFSSNPNKLKLSGP--TFVY 122 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCc--------chhhCCCcccchhhccccccCcchhhhcCC--cccH
Confidence 368899999999999999999999999999985431 111112346777888877666555555554 6677
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
-++|.. .+.....++|-....+..+++.+.+.. +|+|+|... ||. ++..+ ..|-.+|.++|
T Consensus 123 e~~ggf------gn~~~m~~ing~ani~a~kaa~~~gv~-~fvyISa~d-~~~----------~~~i~-rGY~~gKR~AE 183 (283)
T KOG4288|consen 123 EMMGGF------GNIILMDRINGTANINAVKAAAKAGVP-RFVYISAHD-FGL----------PPLIP-RGYIEGKREAE 183 (283)
T ss_pred HHhcCc------cchHHHHHhccHhhHHHHHHHHHcCCc-eEEEEEhhh-cCC----------CCccc-hhhhccchHHH
Confidence 776643 233456677877888889999999965 999999532 221 11122 48999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCC--ChH---HHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHH
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPD--MAY---FFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~--~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 334 (439)
.-+.. .++.+-+++|||.+||.+.-.. ..+ ..-+.+..+.-.-++-..|--+......+.++++|.+.+.++
T Consensus 184 ~Ell~---~~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai 260 (283)
T KOG4288|consen 184 AELLK---KFRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAI 260 (283)
T ss_pred HHHHH---hcCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhc
Confidence 86655 4678999999999999743211 111 222333333332111111124567788999999999999999
Q ss_pred hhch
Q 013602 335 DTAE 338 (439)
Q Consensus 335 ~~~~ 338 (439)
.++.
T Consensus 261 ~dp~ 264 (283)
T KOG4288|consen 261 EDPD 264 (283)
T ss_pred cCCC
Confidence 8877
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.9e-09 Score=102.64 Aligned_cols=177 Identities=16% Similarity=0.044 Sum_probs=110.8
Q ss_pred CCCCEEEEECCCChHHHH--HHHHHHhCCCeEEEEECCCCCCChh-------HHHHHHHhhhc--CCeEEEEcccCCHHH
Q 013602 97 RNGISVLVTGAAGFVGTH--VSAALKRRGDGVLGLDNFNDYYDPS-------LKKARQALLER--SGIFIVEGDINDMAL 165 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~--l~~~L~~~G~~V~~~~r~~~~~~~~-------~~~~~~~~~~~--~~v~~~~~Dl~d~~~ 165 (439)
..+|++||||++++||.+ +++.| +.|++|+++++..+..... ......+.... ..+..+.+|+++.++
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 456999999999999999 89999 9999999998633211100 00011111112 246788999999999
Q ss_pred HHHhhccc-----CccEEEEcccccCcccc----------------c--------------------cChhHHHHHHHHH
Q 013602 166 LKKLFDVV-----SFTHVMHLAAQAGVRYA----------------M--------------------QNPNSYVHSNIAG 204 (439)
Q Consensus 166 ~~~~~~~~-----~~d~Vi~~Ag~~~~~~~----------------~--------------------~~~~~~~~~Nv~g 204 (439)
++++++.+ ++|+||||+|...-..+ . .+-+....+++.|
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~vMg 197 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKVMG 197 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHhhc
Confidence 88888765 68999999997521100 0 0001223455556
Q ss_pred HHHH---HHHHHhcC---CCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEE
Q 013602 205 LVSL---LEVCKNAN---PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTG 275 (439)
Q Consensus 205 t~~l---l~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~i 275 (439)
.... +++....+ ...++|-.|..+- |...+....+.-+.+|.+.|..++.++.++ |+++++
T Consensus 198 gedw~~Wi~al~~a~lla~g~~~va~TY~G~----------~~t~p~Y~~g~mG~AKa~LE~~~r~La~~L~~~giran~ 267 (398)
T PRK13656 198 GEDWELWIDALDEAGVLAEGAKTVAYSYIGP----------ELTHPIYWDGTIGKAKKDLDRTALALNEKLAAKGGDAYV 267 (398)
T ss_pred cchHHHHHHHHHhcccccCCcEEEEEecCCc----------ceeecccCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEE
Confidence 4332 22222222 1127777775442 111121223577999999999999998875 789999
Q ss_pred EeeccccCC
Q 013602 276 LRFFTVYGP 284 (439)
Q Consensus 276 lrpg~v~G~ 284 (439)
+-.+.+-..
T Consensus 268 i~~g~~~T~ 276 (398)
T PRK13656 268 SVLKAVVTQ 276 (398)
T ss_pred EecCcccch
Confidence 988776543
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-09 Score=104.12 Aligned_cols=178 Identities=17% Similarity=0.120 Sum_probs=123.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
..++++|.|+|+.|.||+.++..|+.++ .+++++++.. ...... +.... .. .....+.+|+.++.+.++++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~--~~g~a~--Dl~~~-~~--~~~v~~~td~~~~~~~l~ga 77 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APGVAA--DLSHI-DT--PAKVTGYADGELWEKALRGA 77 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC--Cccccc--chhhc-Cc--CceEEEecCCCchHHHhCCC
Confidence 3567899999999999999999999665 6899999822 111100 10111 11 23344666766667888888
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC--CCCCCCCCCCCCChH
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKV--PFSEKDRTDQPASLY 251 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~--~~~e~~~~~~p~~~Y 251 (439)
|+||++||... ....+..+.+..|+.++.+++++++++++. ++|+++|-.+-.-..-. .+.+.... +|...|
T Consensus 78 --DvVVitaG~~~--~~~~tR~dll~~N~~i~~~i~~~i~~~~~~-~iviv~SNPvdv~~~~~~~~~~~~sg~-p~~~vi 151 (321)
T PTZ00325 78 --DLVLICAGVPR--KPGMTRDDLFNTNAPIVRDLVAAVASSAPK-AIVGIVSNPVNSTVPIAAETLKKAGVY-DPRKLF 151 (321)
T ss_pred --CEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecCcHHHHHHHHHhhhhhccCC-Chhhee
Confidence 99999999732 223456788999999999999999999976 89999986553211110 01111112 455667
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
|.+-+-.-++-..+++.+++....|+ +.|+|..++
T Consensus 152 G~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd 186 (321)
T PTZ00325 152 GVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSG 186 (321)
T ss_pred echhHHHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence 77657777777788888899888888 889998775
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.2e-09 Score=90.98 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=75.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----C
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-----S 174 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 174 (439)
|+++||||+|++|. +++.|+++|++|++++|+.+ ..............+.++.+|++|.+++.++++++ +
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~----~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~ 75 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREV----KLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGP 75 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHH----HHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57999999977765 99999999999999998432 11111111112346888999999999999888765 5
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCC--C-eEEEecCCc
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ--P-AIVWASSSS 228 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~--~-~~V~~SS~~ 228 (439)
+|++|+.+- +.++.++..+|++.+.. + ++|++=.+.
T Consensus 76 id~lv~~vh------------------~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 76 FDLAVAWIH------------------SSAKDALSVVCRELDGSSETYRLFHVLGSA 114 (177)
T ss_pred CeEEEEecc------------------ccchhhHHHHHHHHccCCCCceEEEEeCCc
Confidence 688886652 33578999999998842 1 577765433
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=98.13 Aligned_cols=174 Identities=17% Similarity=0.095 Sum_probs=119.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
.++|.|||++|.||..++..|+.++ .++++++++.. ... ..+.. .........++++.+++.++++++ |
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~--~g~----a~Dl~-~~~~~~~i~~~~~~~d~~~~l~~a--D 88 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT--PGV----AADVS-HINTPAQVRGFLGDDQLGDALKGA--D 88 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC--Cee----Echhh-hCCcCceEEEEeCCCCHHHHcCCC--C
Confidence 3689999999999999999999776 48999998551 110 00110 001111233555555678888988 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC--CCCCCCCCCCCCCCCCChHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGL--NTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~--~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
+|||+||... ....+..+.+..|+..+.++.+.++++++. .+|+++|--+-+. .....+.... ...|...|+.+
T Consensus 89 iVVitAG~~~--~~g~~R~dll~~N~~i~~~i~~~i~~~~p~-aivivvSNPvD~~~~i~t~~~~~~s-~~p~~~viG~~ 164 (323)
T PLN00106 89 LVIIPAGVPR--KPGMTRDDLFNINAGIVKTLCEAVAKHCPN-ALVNIISNPVNSTVPIAAEVLKKAG-VYDPKKLFGVT 164 (323)
T ss_pred EEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHHcC-CCCcceEEEEe
Confidence 9999999743 233557789999999999999999999977 7777776333100 0000000111 22456788888
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCC
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWG 286 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~ 286 (439)
++..+++-..+++++|+....|+ +.|+|..+
T Consensus 165 ~LDs~Rl~~~lA~~lgv~~~~V~-~~ViGeHg 195 (323)
T PLN00106 165 TLDVVRANTFVAEKKGLDPADVD-VPVVGGHA 195 (323)
T ss_pred cchHHHHHHHHHHHhCCChhheE-EEEEEeCC
Confidence 99999999999999999888874 56777763
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-07 Score=93.25 Aligned_cols=98 Identities=28% Similarity=0.273 Sum_probs=77.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
+|+|||.|| |+||+.++..|+++| .+|+++||+.+ +..+.......+++.+++|+.|.+++.+++++. |+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~------~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~--d~ 71 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKE------KCARIAELIGGKVEALQVDAADVDALVALIKDF--DL 71 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHH------HHHHHHhhccccceeEEecccChHHHHHHHhcC--CE
Confidence 478999998 999999999999999 89999999332 222222223348999999999999999999999 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|||++.... ..+++++|.++|. .+|=+|
T Consensus 72 VIn~~p~~~------------------~~~i~ka~i~~gv--~yvDts 99 (389)
T COG1748 72 VINAAPPFV------------------DLTILKACIKTGV--DYVDTS 99 (389)
T ss_pred EEEeCCchh------------------hHHHHHHHHHhCC--CEEEcc
Confidence 999986521 3478888888885 555554
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-08 Score=71.55 Aligned_cols=60 Identities=27% Similarity=0.353 Sum_probs=40.3
Q ss_pred HHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 372 ILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 372 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
+++++.|.+.++.+.+ .+.+|+..+.+|.+|++++|||+|+++|+++++++++|+++|..
T Consensus 1 A~e~vtG~~i~~~~~~-rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 1 AFEKVTGKKIPVEYAP-RRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp HHHHHHTS---EEEE----TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHCCCCCceECC-CCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcC
Confidence 3678899998887765 78999999999999999999999999999999999999988753
|
... |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-08 Score=90.98 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=59.7
Q ss_pred CCCEEEEECCC----------------ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC
Q 013602 98 NGISVLVTGAA----------------GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161 (439)
Q Consensus 98 ~~~~VlItGat----------------G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~ 161 (439)
.||+||||+|. ||+|++|+++|+++|++|+++++........ ......+..+..|..
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~-------~~~~~~~~~V~s~~d 74 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPND-------INNQLELHPFEGIID 74 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcc-------cCCceeEEEEecHHH
Confidence 68999999886 9999999999999999999998743211000 001123344566444
Q ss_pred CHHHHHHhhcccCccEEEEcccccCcc
Q 013602 162 DMALLKKLFDVVSFTHVMHLAAQAGVR 188 (439)
Q Consensus 162 d~~~~~~~~~~~~~d~Vi~~Ag~~~~~ 188 (439)
..+.+.++++..++|+|||+||+..+.
T Consensus 75 ~~~~l~~~~~~~~~D~VIH~AAvsD~~ 101 (229)
T PRK09620 75 LQDKMKSIITHEKVDAVIMAAAGSDWV 101 (229)
T ss_pred HHHHHHHHhcccCCCEEEECcccccee
Confidence 446788888766779999999986543
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.3e-07 Score=88.31 Aligned_cols=177 Identities=12% Similarity=0.079 Sum_probs=104.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC-------CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG-------DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
.+|+||||+|+||++++..|+.++ .+|+++++...... ... ...+... .......|+....++.+.+++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~-~~g-~~~Dl~d--~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKA-LEG-VVMELQD--CAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccc-ccc-eeeehhh--ccccccCCceecCCHHHHhCC
Confidence 369999999999999999999854 58999998442100 000 0000000 000112344445567778888
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChH
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLY 251 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y 251 (439)
+ |+|||+||... ....+..+.++.|+.-...+.+.++++. +...+|.+|.-.- .......+......+...=
T Consensus 79 a--DiVI~tAG~~~--~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD---~~t~~~~k~~~~~~~~~ig 151 (325)
T cd01336 79 V--DVAILVGAMPR--KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN---TNALILLKYAPSIPKENFT 151 (325)
T ss_pred C--CEEEEeCCcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH---HHHHHHHHHcCCCCHHHEE
Confidence 8 99999999743 2334567899999999999999998884 4546777774110 0000000110000111111
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
..+.+..-++-..+++.+++....++-..|+|..++
T Consensus 152 ~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~ 187 (325)
T cd01336 152 ALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS 187 (325)
T ss_pred eeehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC
Confidence 122334444455556667888888887888888665
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.9e-07 Score=82.94 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=50.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC--HHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND--MALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~~~~~ 175 (439)
+.-+++=-.+||++|.+++++|+++|++|++++|.... ......++.++.++-.+ .+.+.+.++++
T Consensus 15 D~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~----------~~~~~~~v~~i~v~s~~~m~~~l~~~~~~~-- 82 (229)
T PRK06732 15 DSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAV----------KPEPHPNLSIIEIENVDDLLETLEPLVKDH-- 82 (229)
T ss_pred CCceeecCccchHHHHHHHHHHHhCCCEEEEEECcccc----------cCCCCCCeEEEEEecHHHHHHHHHHHhcCC--
Confidence 33334333567899999999999999999999973210 00012356666654322 24555566555
Q ss_pred cEEEEcccccC
Q 013602 176 THVMHLAAQAG 186 (439)
Q Consensus 176 d~Vi~~Ag~~~ 186 (439)
|+||||||+..
T Consensus 83 DivIh~AAvsd 93 (229)
T PRK06732 83 DVLIHSMAVSD 93 (229)
T ss_pred CEEEeCCccCC
Confidence 99999999865
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=85.31 Aligned_cols=187 Identities=13% Similarity=0.115 Sum_probs=122.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCCCC--CChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHh
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD-------GVLGLDNFNDY--YDPSLKKARQAL-LERSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~ 169 (439)
++|.|+|++|.||..++..|+.+|. ++.+++...+. .....-...... .....+.+. . . ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~--~----~~~~ 75 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-D--D----PNVA 75 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-c--C----cHHH
Confidence 5899999999999999999998874 79999884432 221111111110 001122221 1 1 2455
Q ss_pred hcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCC---cccCCCCCCCCCCCCCCC
Q 013602 170 FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSS---SVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 170 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~---~v~g~~~~~~~~e~~~~~ 245 (439)
+++. |+||.+||.. +....+..+.+..|..-...+.+.+++++. ...+|.+|-- -.|- ..+.....
T Consensus 76 ~~da--DivvitaG~~--~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~------~~k~sg~~ 145 (322)
T cd01338 76 FKDA--DWALLVGAKP--RGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALI------AMKNAPDI 145 (322)
T ss_pred hCCC--CEEEEeCCCC--CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHH------HHHHcCCC
Confidence 6666 9999999973 333345678899999999999999999884 6577777641 0000 00011112
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCC
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSI 305 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~ 305 (439)
++...|+.+++..+++...+++.+|++...+|..+|||+.++ ..++.|-.....|.++
T Consensus 146 p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~--s~vp~~S~~~v~g~pl 203 (322)
T cd01338 146 PPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP--TQYPDFTNATIGGKPA 203 (322)
T ss_pred ChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc--cEEEehhhcEECCEeH
Confidence 456789999999999999999999999999999999999854 3333333333444444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.3e-06 Score=83.79 Aligned_cols=74 Identities=32% Similarity=0.364 Sum_probs=56.2
Q ss_pred EEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
|+|.|| |++|+.+++.|++++. +|++.+|+. .+..... ....++.++++|+.|.+++.+++++. |+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~-------~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~--dv 70 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP-------EKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGC--DV 70 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH-------HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTS--SE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH-------HHHHHHHhhccccceeEEEEecCCHHHHHHHHhcC--CE
Confidence 789999 9999999999999974 899999922 2211111 14579999999999999999999999 99
Q ss_pred EEEccccc
Q 013602 178 VMHLAAQA 185 (439)
Q Consensus 178 Vi~~Ag~~ 185 (439)
|||+++..
T Consensus 71 Vin~~gp~ 78 (386)
T PF03435_consen 71 VINCAGPF 78 (386)
T ss_dssp EEE-SSGG
T ss_pred EEECCccc
Confidence 99999864
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=86.80 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=61.7
Q ss_pred ccCCCCEEEEECC----------------CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEc
Q 013602 95 RARNGISVLVTGA----------------AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEG 158 (439)
Q Consensus 95 ~~~~~~~VlItGa----------------tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (439)
..+.+|+|||||| +|.+|.+++++|.++|++|+++++.... . ...+ ...+
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~----------~--~~~~--~~~~ 249 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNL----------P--TPAG--VKRI 249 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccc----------c--CCCC--cEEE
Confidence 4478999999999 8889999999999999999999984311 0 0112 3467
Q ss_pred ccCCHHHHHHhhccc--CccEEEEcccccCc
Q 013602 159 DINDMALLKKLFDVV--SFTHVMHLAAQAGV 187 (439)
Q Consensus 159 Dl~d~~~~~~~~~~~--~~d~Vi~~Ag~~~~ 187 (439)
|+++.+++.+++.+. ++|++|||||+...
T Consensus 250 dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~ 280 (399)
T PRK05579 250 DVESAQEMLDAVLAALPQADIFIMAAAVADY 280 (399)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEEccccccc
Confidence 999999888877642 57999999998554
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.8e-06 Score=78.67 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=103.4
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH----------
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD-------GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM---------- 163 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---------- 163 (439)
+|.|+||+|.||+.++..|+.+|. ++++++++... +..+....|+.|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~---------------~~~~g~~~Dl~d~~~~~~~~~~i 66 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM---------------KALEGVVMELQDCAFPLLKGVVI 66 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc---------------CccceeeeehhhhcccccCCcEE
Confidence 699999999999999999998762 58888884410 1122223333333
Q ss_pred -HHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc---ccCCCCCCCC
Q 013602 164 -ALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSS---VYGLNTKVPF 238 (439)
Q Consensus 164 -~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~---v~g~~~~~~~ 238 (439)
....+.++++ |+|||+||.. +....+..+.+..|..-...+.+.+++.. +...+|.+|--. .|- .+
T Consensus 67 ~~~~~~~~~~a--DiVVitAG~~--~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~-----~~ 137 (323)
T cd00704 67 TTDPEEAFKDV--DVAILVGAFP--RKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALI-----AL 137 (323)
T ss_pred ecChHHHhCCC--CEEEEeCCCC--CCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHH-----HH
Confidence 2356777777 9999999973 33345667899999999999999999984 665777776310 000 00
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
...... ++...-+.+.+-.-++-..+++.+++....|+-..|+|..++
T Consensus 138 k~sg~~-p~~~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 185 (323)
T cd00704 138 KNAPNL-PPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN 185 (323)
T ss_pred HHcCCC-CHHHEEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEecccC
Confidence 000100 111122334555555556666667877777766678887665
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.22 E-value=8e-06 Score=73.60 Aligned_cols=82 Identities=23% Similarity=0.201 Sum_probs=61.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
.++++++|+||+|++|+.+++.|+++|++|++++|+.++. ...........+.....+|..+.+++.++++++ |
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~----~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--d 99 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERA----QKAADSLRARFGEGVGAVETSDDAARAAAIKGA--D 99 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH----HHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcC--C
Confidence 5678999999999999999999999999999999843211 111111111224556677889999999999888 9
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+||++...
T Consensus 100 iVi~at~~ 107 (194)
T cd01078 100 VVFAAGAA 107 (194)
T ss_pred EEEECCCC
Confidence 99987653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.5e-06 Score=78.06 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=71.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|||+||||. |+.+++.|.++|++|++..+.... .......+...+..+..|.+++.+++++.++|+||
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~---------~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VI 70 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEG---------KHLYPIHQALTVHTGALDPQELREFLKRHSIDILV 70 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCc---------cccccccCCceEEECCCCHHHHHHHHHhcCCCEEE
Confidence 58999999999 999999999999999999884431 11112233445667778889999999998999999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCC
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~ 217 (439)
+.+.... ...+.|+.++|++.+.
T Consensus 71 DAtHPfA---------------~~is~~a~~a~~~~~i 93 (256)
T TIGR00715 71 DATHPFA---------------AQITTNATAVCKELGI 93 (256)
T ss_pred EcCCHHH---------------HHHHHHHHHHHHHhCC
Confidence 9885422 1236789999999986
|
This enzyme was found to be a monomer by gel filtration. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.9e-06 Score=76.77 Aligned_cols=75 Identities=12% Similarity=0.167 Sum_probs=52.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
+.-+++=-.++|+||.+++++|+++|++|+++++... . ... ....+|+.+.+++.++++.+
T Consensus 14 D~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~----------l---~~~--~~~~~Dv~d~~s~~~l~~~v~~~~ 78 (227)
T TIGR02114 14 DSVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA----------L---KPE--PHPNLSIREIETTKDLLITLKELV 78 (227)
T ss_pred CCceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh----------c---ccc--cCCcceeecHHHHHHHHHHHHHHc
Confidence 3334444455899999999999999999999876110 0 000 01357899988877766543
Q ss_pred -CccEEEEcccccCc
Q 013602 174 -SFTHVMHLAAQAGV 187 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~ 187 (439)
++|++|||||+...
T Consensus 79 g~iDiLVnnAgv~d~ 93 (227)
T TIGR02114 79 QEHDILIHSMAVSDY 93 (227)
T ss_pred CCCCEEEECCEeccc
Confidence 57999999997543
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=76.47 Aligned_cols=172 Identities=16% Similarity=0.070 Sum_probs=100.0
Q ss_pred CEEEEECCCChHHHHHHHHHHh---CCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKR---RGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
|+|+|+||+|.||++++..|.. .++.+++++|+.. ... ...+.........+.+ .+.+++.+.++++ |
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g----~alDl~~~~~~~~i~~--~~~~d~~~~l~~~--D 71 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPG----VAVDLSHIPTAVKIKG--FSGEDPTPALEGA--D 71 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Ccc----eehhhhcCCCCceEEE--eCCCCHHHHcCCC--C
Confidence 6899999999999999998855 3468888888532 110 0011111111122333 2233445566766 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc----cCCCCCCCCCCCCCCCCCCChHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV----YGLNTKVPFSEKDRTDQPASLYA 252 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v----~g~~~~~~~~e~~~~~~p~~~Y~ 252 (439)
+||.++|.... ...+..+.+..|...+.++++.++++++. ++|.+.|--+ |-.. ......... ++....+
T Consensus 72 iVIitaG~~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~-~ivivvsNP~D~~t~~~~-~~~~~~sg~--p~~rvig 145 (312)
T PRK05086 72 VVLISAGVARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPK-ACIGIITNPVNTTVAIAA-EVLKKAGVY--DKNKLFG 145 (312)
T ss_pred EEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccCchHHHHHHHH-HHHHHhcCC--CHHHEEe
Confidence 99999997432 23456788999999999999999999876 6666665211 0000 000000000 0111111
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 253 ATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 253 ~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
..-+..-++...+++.+|++..-|+ +.|+|..++
T Consensus 146 ~~~Lds~R~~~~ia~~l~~~~~~v~-~~v~GeHg~ 179 (312)
T PRK05086 146 VTTLDVIRSETFVAELKGKQPGEVE-VPVIGGHSG 179 (312)
T ss_pred eecHHHHHHHHHHHHHhCCChhheE-EEEEEecCC
Confidence 1113334455556666788888887 778888744
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.3e-05 Score=74.26 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=101.3
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---------
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD-------GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA--------- 164 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~--------- 164 (439)
+|.|+|++|.||+.++..|..+|. +++++++..+. ...+-...|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~---------------~~a~g~~~Dl~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAM---------------KVLEGVVMELMDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcc---------------cccceeEeehhcccchhcCceec
Confidence 589999999999999999998653 58899873321 01222334444443
Q ss_pred --HHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc---ccCCCCCCCC
Q 013602 165 --LLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSS---VYGLNTKVPF 238 (439)
Q Consensus 165 --~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~---v~g~~~~~~~ 238 (439)
...+.++++ |+||++||... ....+..+.+..|+.-...+.+.++++. ....+|.+|--. .|- .
T Consensus 66 ~~~~~~~~~~a--DiVVitAG~~~--~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v------~ 135 (324)
T TIGR01758 66 THDPAVAFTDV--DVAILVGAFPR--KEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALV------L 135 (324)
T ss_pred cCChHHHhCCC--CEEEEcCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHH------H
Confidence 235666777 99999999742 2234467899999999999999999984 655777777310 000 0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
.+......+.-.=..+.+-.-++-..+++.+++....|+-..|+|..++
T Consensus 136 ~~~sg~~~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 184 (324)
T TIGR01758 136 SNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSS 184 (324)
T ss_pred HHHcCCCCcceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCCC
Confidence 0000000111111112333444555566667888888888888898665
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-05 Score=76.70 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=59.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHhhh--cCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLE--RSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.++|+++|+|| |++|++++..|++.|++ |++++|+....+.. +...+.+. ...+.+..+|+.+.+++.+.++..
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a--~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~ 200 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERA--EQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASS 200 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHH--HHHHHHHhhcCCCceeEEechhhhhHHHhhhccC
Confidence 56789999998 89999999999999986 99999954210111 11111111 134556678999888888888877
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
|+|||+-.+
T Consensus 201 --DilINaTp~ 209 (289)
T PRK12548 201 --DILVNATLV 209 (289)
T ss_pred --CEEEEeCCC
Confidence 999998754
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.6e-05 Score=65.48 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=75.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhh-hcC--CeEEEEcccCCHHHHHHhhcccC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALL-ERS--GIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~--~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
|+|.|+|++|.+|++++..|..++ .++++++++.+....... ..... ... .+.... .+. +.+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~--Dl~~~~~~~~~~~~i~~---~~~----~~~~~a- 70 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEAL--DLSHASAPLPSPVRITS---GDY----EALKDA- 70 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH--HHHHHHHGSTEEEEEEE---SSG----GGGTTE-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeeh--hhhhhhhhccccccccc---ccc----cccccc-
Confidence 589999999999999999999887 589999984321111110 11111 111 122222 222 344555
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||-+||... ....+..+.+..|..-...+.+.+.+.++...+|.+|
T Consensus 71 -Divvitag~~~--~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 71 -DIVVITAGVPR--KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp -SEEEETTSTSS--STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred -cEEEEeccccc--cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 99999999732 3334567889999999999999999998776777776
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.8e-06 Score=77.48 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=64.3
Q ss_pred EEEEECCCChHHHHHHHHHHh----CCCeEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 101 SVLVTGAAGFVGTHVSAALKR----RGDGVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~----~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.++|.||+||-|+.++.++.+ .|...-++.|+..+....+......... -.....+.+|.+|++++.+.++++
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~-- 84 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQA-- 84 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhh--
Confidence 589999999999999999999 7889999999665444433332222211 123338899999999999999999
Q ss_pred cEEEEccccc
Q 013602 176 THVMHLAAQA 185 (439)
Q Consensus 176 d~Vi~~Ag~~ 185 (439)
.+|+||+|+.
T Consensus 85 ~vivN~vGPy 94 (423)
T KOG2733|consen 85 RVIVNCVGPY 94 (423)
T ss_pred EEEEeccccc
Confidence 9999999974
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.3e-05 Score=79.53 Aligned_cols=107 Identities=15% Similarity=0.195 Sum_probs=72.6
Q ss_pred cCCCCEEEEECC---------------C-ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcc
Q 013602 96 ARNGISVLVTGA---------------A-GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159 (439)
Q Consensus 96 ~~~~~~VlItGa---------------t-G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D 159 (439)
.+.||+|||||| + |.+|.+++++|.++|++|+++.+.... . ...++ ...|
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~-----------~-~~~~~--~~~~ 247 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSL-----------L-TPPGV--KSIK 247 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCcc-----------C-CCCCc--EEEE
Confidence 478999999999 3 459999999999999999999873221 0 11122 4579
Q ss_pred cCCHHHH-HHhhccc--CccEEEEcccccCccccccC------hhHHHHHHHHHHHHHHHHHHhcC
Q 013602 160 INDMALL-KKLFDVV--SFTHVMHLAAQAGVRYAMQN------PNSYVHSNIAGLVSLLEVCKNAN 216 (439)
Q Consensus 160 l~d~~~~-~~~~~~~--~~d~Vi~~Ag~~~~~~~~~~------~~~~~~~Nv~gt~~ll~~~~~~~ 216 (439)
+++.+++ +++++.. +.|++|||||+......... ....+..|+.-+..++..+++..
T Consensus 248 v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 248 VSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred eccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 9998888 5555332 46999999998655321110 01233456666777777777654
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00043 Score=67.12 Aligned_cols=117 Identities=17% Similarity=0.104 Sum_probs=80.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
..+++|.|+|+ |.||..++..|+.+|. ++.+++++.+..................+.... .+. +.++++
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~---~~~----~~~~~a- 74 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA---GDY----SDCKDA- 74 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe---CCH----HHhCCC-
Confidence 35679999998 9999999999999986 899999865543322222111111112333322 222 335666
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||.+||.. +.+..+..+.+..|..-...+++.+++.++...+|.+|
T Consensus 75 -divIitag~~--~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 75 -DLVVITAGAP--QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred -CEEEEecCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 9999999973 23334567889999999999999999988776777777
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00035 Score=67.65 Aligned_cols=170 Identities=14% Similarity=0.127 Sum_probs=97.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCC--CCCChhHHHHHHHhhhcCCeEEEEcccC-CHHHHHHhhcccC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFN--DYYDPSLKKARQALLERSGIFIVEGDIN-DMALLKKLFDVVS 174 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~--~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~~~~~~~~~~ 174 (439)
|+|.|+|++|.+|..++..|+..|. +|++++|.. +.......+....... .+... .+..+ | .+ .+++.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~-~~~~~-~i~~~~d---~~-~l~~a- 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAA-AGIDA-EIKISSD---LS-DVAGS- 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhc-cCCCc-EEEECCC---HH-HhCCC-
Confidence 5899999999999999999999986 599999943 2222111111111111 11111 12222 2 22 36666
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc---ccCCCCCCCCCCCCCCCCCCChH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS---VYGLNTKVPFSEKDRTDQPASLY 251 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~---v~g~~~~~~~~e~~~~~~p~~~Y 251 (439)
|+||-++|... ....+..+.++.|..-...+.+.+.+......||.+++-. .|-.... ... .+....
T Consensus 74 -DiViitag~p~--~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~------~g~-~~~~vi 143 (309)
T cd05294 74 -DIVIITAGVPR--KEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKE------SGF-DKNRVF 143 (309)
T ss_pred -CEEEEecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHh------cCC-CHHHEe
Confidence 99999998632 2223446788999999999999988887665788888621 1100000 000 111112
Q ss_pred HH-HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 252 AA-TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 252 ~~-sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
+. +-+...++-..+++.+++....|+ +.|.|..++
T Consensus 144 G~gt~LDs~R~~~~la~~l~v~~~~v~-~~viGeHg~ 179 (309)
T cd05294 144 GLGTHLDSLRFKVAIAKHFNVHISEVH-TRIIGEHGD 179 (309)
T ss_pred eccchHHHHHHHHHHHHHHCcChHHeE-EEEEecCCC
Confidence 22 122233444445555677666666 556687654
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00047 Score=66.73 Aligned_cols=168 Identities=16% Similarity=0.138 Sum_probs=101.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
++|.|.|+ |++|+.++..|+.+| ++|++++++.+............... ...+.... .+.+ .++++ |
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~----~l~~a--D 70 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYS----DCKDA--D 70 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHH----HhCCC--C
Confidence 47999995 999999999999999 68999999665433222222111111 11222222 2332 24566 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc---ccCCCCCCCCCCCCCCCCCCChHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS---VYGLNTKVPFSEKDRTDQPASLYAA 253 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~---v~g~~~~~~~~e~~~~~~p~~~Y~~ 253 (439)
+||+++|.. .....+..+.+..|..-...+.+.++++++...+|++|--. .|-. ...... ++....+.
T Consensus 71 IVIitag~~--~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~-----~~~~g~--p~~~v~g~ 141 (306)
T cd05291 71 IVVITAGAP--QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV-----QKLSGL--PKNRVIGT 141 (306)
T ss_pred EEEEccCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH-----HHHhCc--CHHHEeec
Confidence 999999873 22334566889999999999999999998776777777310 0000 000000 11111222
Q ss_pred -HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 254 -TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 254 -sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
+-+..-++...+++..+++..-|+. .|+|..++
T Consensus 142 gt~LDs~R~~~~la~~l~v~~~~v~~-~V~G~Hg~ 175 (306)
T cd05291 142 GTSLDTARLRRALAEKLNVDPRSVHA-YVLGEHGD 175 (306)
T ss_pred cchHHHHHHHHHHHHHHCCCcccceE-EEEecCCC
Confidence 2223344445555667888887875 78998654
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.4e-05 Score=71.80 Aligned_cols=73 Identities=23% Similarity=0.268 Sum_probs=50.4
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhC-C-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRR-G-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.+.+++|+||||+|+||++++++|+++ | .+++++.|+.. +...+.. ++..+|+. .+.+++.+.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~---------rl~~La~---el~~~~i~---~l~~~l~~a 216 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQE---------RLQELQA---ELGGGKIL---SLEEALPEA 216 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHH---------HHHHHHH---HhccccHH---hHHHHHccC
Confidence 367899999999999999999999865 5 68999988322 1111111 11123333 356777776
Q ss_pred CccEEEEccccc
Q 013602 174 SFTHVMHLAAQA 185 (439)
Q Consensus 174 ~~d~Vi~~Ag~~ 185 (439)
|+|||+++..
T Consensus 217 --DiVv~~ts~~ 226 (340)
T PRK14982 217 --DIVVWVASMP 226 (340)
T ss_pred --CEEEECCcCC
Confidence 9999999863
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00016 Score=64.21 Aligned_cols=75 Identities=21% Similarity=0.348 Sum_probs=45.9
Q ss_pred CCCEEEEECC----------------CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC
Q 013602 98 NGISVLVTGA----------------AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161 (439)
Q Consensus 98 ~~~~VlItGa----------------tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~ 161 (439)
.||+||||+| ||-.|.+|++++..+|++|+.+..... .....++..+. +.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~------------~~~p~~~~~i~--v~ 67 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS------------LPPPPGVKVIR--VE 67 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------------TTEEEEE---S
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc------------ccccccceEEE--ec
Confidence 4667777754 789999999999999999999997321 00123666665 44
Q ss_pred CHHHHH----HhhcccCccEEEEcccccCcc
Q 013602 162 DMALLK----KLFDVVSFTHVMHLAAQAGVR 188 (439)
Q Consensus 162 d~~~~~----~~~~~~~~d~Vi~~Ag~~~~~ 188 (439)
+.+++. +.+.+. |++||+|++..+.
T Consensus 68 sa~em~~~~~~~~~~~--Di~I~aAAVsDf~ 96 (185)
T PF04127_consen 68 SAEEMLEAVKELLPSA--DIIIMAAAVSDFR 96 (185)
T ss_dssp SHHHHHHHHHHHGGGG--SEEEE-SB--SEE
T ss_pred chhhhhhhhccccCcc--eeEEEecchhhee
Confidence 555444 444445 9999999996653
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00061 Score=65.66 Aligned_cols=169 Identities=19% Similarity=0.127 Sum_probs=104.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
|+|.|+|++|.+|++++..|+.+| .++++++.+ ......-. ..... ....... ....+++.+.+++. |+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alD--L~~~~-~~~~i~~--~~~~~~~y~~~~da--Di 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAAD--LSHIN-TPAKVTG--YLGPEELKKALKGA--DV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehH--hHhCC-CcceEEE--ecCCCchHHhcCCC--CE
Confidence 589999999999999999999888 488999885 11111111 11100 1111111 10112355667777 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc-------ccCCCCCCCCCCCCCCCCCCCh
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS-------VYGLNTKVPFSEKDRTDQPASL 250 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~-------v~g~~~~~~~~e~~~~~~p~~~ 250 (439)
||-+||.. +.+..+..+.++.|..-...+.+..+++++...+|++|--. .|-. +..... .+...
T Consensus 72 vvitaG~~--~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~-----~~~s~~--p~~rv 142 (310)
T cd01337 72 VVIPAGVP--RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVL-----KKAGVY--DPKRL 142 (310)
T ss_pred EEEeCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHH-----HHhcCC--CHHHE
Confidence 99999973 33345667899999999999999999998876788777411 1100 000000 11112
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCC-CC
Q 013602 251 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPW-GR 287 (439)
Q Consensus 251 Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~-~~ 287 (439)
.+..-+-.-++-..+++.+|+...-|+ +.|+|.. ++
T Consensus 143 iG~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeHsGd 179 (310)
T cd01337 143 FGVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGHSGV 179 (310)
T ss_pred EeeechHHHHHHHHHHHHhCcCHHHEE-EEEEecCCCC
Confidence 222224444556666777788877787 8889987 44
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0018 Score=65.94 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=106.9
Q ss_pred CCCCEEEEECCC-ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh---h--cCCeEEEEcccCCHHHHHHhh
Q 013602 97 RNGISVLVTGAA-GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---E--RSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGat-G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~--~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
-.++.+|||||+ |-||..++..|+..|++|++...+-+ .......+..- . ...+.++..++.+...++.++
T Consensus 394 y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s---~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlI 470 (866)
T COG4982 394 YGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLS---EERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALI 470 (866)
T ss_pred cccceEEEecCCCcchHHHHHHHHHhCCcEEEEEccccc---HHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHH
Confidence 456899999998 89999999999999999999864221 12111111111 1 134667888888777766666
Q ss_pred ccc-------------------CccEEEEcccccCcc-ccccChh--HHHHHHHHHHHHHHHHHHhcCCCC------eEE
Q 013602 171 DVV-------------------SFTHVMHLAAQAGVR-YAMQNPN--SYVHSNIAGLVSLLEVCKNANPQP------AIV 222 (439)
Q Consensus 171 ~~~-------------------~~d~Vi~~Ag~~~~~-~~~~~~~--~~~~~Nv~gt~~ll~~~~~~~~~~------~~V 222 (439)
+.+ .||.+|-+|++.... ....++. ..+++-+.....++-.+++.+..+ ++|
T Consensus 471 ewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVV 550 (866)
T COG4982 471 EWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVV 550 (866)
T ss_pred HHhccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEE
Confidence 432 478899999874332 2233333 344444444555666666554332 455
Q ss_pred EecCC--cccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh----CCcEEEEeeccccCCC
Q 013602 223 WASSS--SVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY----GLSLTGLRFFTVYGPW 285 (439)
Q Consensus 223 ~~SS~--~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~----gi~~~ilrpg~v~G~~ 285 (439)
.-.|- +.| ..-+.|+.+|++.+..+..+..+. .+.++--+.|++-|.+
T Consensus 551 LPgSPNrG~F---------------GgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTG 604 (866)
T COG4982 551 LPGSPNRGMF---------------GGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTG 604 (866)
T ss_pred ecCCCCCCcc---------------CCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeecccc
Confidence 54441 111 234789999999999999887774 2445555666666654
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0016 Score=65.61 Aligned_cols=169 Identities=14% Similarity=0.115 Sum_probs=105.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhC-------CC--eEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHh
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRR-------GD--GVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~-------G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~ 169 (439)
-+|.|+|++|.||.+++..|+.+ |. ++++++++.+......-+..... ....++.+. . .| .+.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~-~--~~----ye~ 173 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG-I--DP----YEV 173 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe-c--CC----HHH
Confidence 58999999999999999999988 64 78888886665443332222211 111122222 1 23 344
Q ss_pred hcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHh-cCCCCeEEEecCCc-----ccCCCCCCCCCCCCC
Q 013602 170 FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKN-ANPQPAIVWASSSS-----VYGLNTKVPFSEKDR 243 (439)
Q Consensus 170 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~-~~~~~~~V~~SS~~-----v~g~~~~~~~~e~~~ 243 (439)
+++. |+||-+||.. +....+..+.++.|..-...+.+.+++ ++....||.+|--. +.-. ....
T Consensus 174 ~kda--DiVVitAG~p--rkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k-------~sg~ 242 (444)
T PLN00112 174 FQDA--EWALLIGAKP--RGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLK-------NAPN 242 (444)
T ss_pred hCcC--CEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHH-------HcCC
Confidence 5566 9999999973 333355678999999999999999999 57665777777310 1000 0000
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
+ .....=..+.+---++-..+++++++....|+-+.|+|..++
T Consensus 243 ~-~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd 285 (444)
T PLN00112 243 I-PAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST 285 (444)
T ss_pred C-CcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC
Confidence 1 111111123344444555566667888888888888998765
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.001 Score=65.07 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=73.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC-----------------CChhHHH--HHHHhh-hcCCeEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY-----------------YDPSLKK--ARQALL-ERSGIFI 155 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~-----------------~~~~~~~--~~~~~~-~~~~v~~ 155 (439)
+...+|+|.|+ |++|++++..|++.|. ++++++.+.-. ....... ...... ..-.++.
T Consensus 22 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 22 LREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 56678999996 9999999999999998 89999886410 0001111 111111 1224556
Q ss_pred EEcccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 156 VEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 156 ~~~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
+..+++ .+.+.++++++ |+||.+. +++ ..-..+.++|.+.+. .+|+.++.+.||
T Consensus 101 ~~~~~~-~~~~~~~~~~~--DlVid~~---------Dn~--------~~r~~ln~~~~~~~i--P~i~~~~~g~~G 154 (339)
T PRK07688 101 IVQDVT-AEELEELVTGV--DLIIDAT---------DNF--------ETRFIVNDAAQKYGI--PWIYGACVGSYG 154 (339)
T ss_pred EeccCC-HHHHHHHHcCC--CEEEEcC---------CCH--------HHHHHHHHHHHHhCC--CEEEEeeeeeee
Confidence 666765 45677788877 9999875 222 223356778888874 788888777666
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00044 Score=74.56 Aligned_cols=170 Identities=20% Similarity=0.210 Sum_probs=111.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCe--EEEEcccCCHHHHHHhhccc--
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGI--FIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v--~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
..|.++|+||-|++|.+|++-|..||++-.++.....-........ -......+| .+-..|++..+.-+++++..
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~-vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~k 1845 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALM-VRRWRRRGVQVQVSTSNITTAEGARGLIEESNK 1845 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHH-HHHHHhcCeEEEEecccchhhhhHHHHHHHhhh
Confidence 3589999999999999999999999986555543222111111111 112223344 44566888877777777665
Q ss_pred --CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~~ 246 (439)
..-.|||+|++..- +.+.+++++.-+.-+.||.||=+..++.=. ..-||..||.+. | .-..
T Consensus 1846 l~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvsc-G-----------RGN~ 1913 (2376)
T KOG1202|consen 1846 LGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSC-G-----------RGNA 1913 (2376)
T ss_pred cccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecc-c-----------CCCC
Confidence 35679999987432 233455556666677788888777765532 238999999654 1 1124
Q ss_pred CCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccc
Q 013602 247 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v 281 (439)
..+.|+-+..+.|+++.+-+. .|++-+.|-=|.|
T Consensus 1914 GQtNYG~aNS~MERiceqRr~-~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1914 GQTNYGLANSAMERICEQRRH-EGFPGTAIQWGAI 1947 (2376)
T ss_pred cccccchhhHHHHHHHHHhhh-cCCCcceeeeecc
Confidence 568999999999999887544 4777666665544
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00097 Score=65.26 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=72.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------C--------ChhHHH--HH-HHhhhcCCeEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------Y--------DPSLKK--AR-QALLERSGIFI 155 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------~--------~~~~~~--~~-~~~~~~~~v~~ 155 (439)
+..++|+|.|+ |++|+++++.|++.|. +++++|++.-. + .+.... .. .+....-.++.
T Consensus 22 L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 22 IREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 56689999995 8999999999999997 78888886510 0 001110 11 11112234566
Q ss_pred EEcccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 156 VEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 156 ~~~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
+..|++ .+.++++++++ |+||.+.. +++ .-..+-++|.+.+. .+|+.+..+.+|
T Consensus 101 ~~~~~~-~~~~~~~~~~~--DlVid~~D---------~~~--------~r~~in~~~~~~~i--p~i~~~~~g~~G 154 (338)
T PRK12475 101 VVTDVT-VEELEELVKEV--DLIIDATD---------NFD--------TRLLINDLSQKYNI--PWIYGGCVGSYG 154 (338)
T ss_pred EeccCC-HHHHHHHhcCC--CEEEEcCC---------CHH--------HHHHHHHHHHHcCC--CEEEEEecccEE
Confidence 677775 45678888877 99998762 221 12335577888775 778887766665
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0015 Score=63.47 Aligned_cols=171 Identities=13% Similarity=0.087 Sum_probs=104.0
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCCCC--CChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHh
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD-------GVLGLDNFNDY--YDPSLKKARQAL-LERSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~ 169 (439)
.+|.|+|++|.+|+.++..|+.+|. ++++++..... ............ ....++. +. ....+.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~------~~~~~~ 76 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVV-AT------TDPEEA 76 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcE-Ee------cChHHH
Confidence 4799999999999999999998884 78999885421 221111111110 0001121 11 122455
Q ss_pred hcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCc---ccCCCCCCCCCCCCCCC
Q 013602 170 FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSS---VYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 170 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~---v~g~~~~~~~~e~~~~~ 245 (439)
++++ |+||.+||.. +....+..+.+..|..-...+.+.++++.+ ...+|.+|--. .|- ..+..+-.
T Consensus 77 ~~da--DvVVitAG~~--~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v------~~k~s~g~ 146 (323)
T TIGR01759 77 FKDV--DAALLVGAFP--RKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALI------ASKNAPDI 146 (323)
T ss_pred hCCC--CEEEEeCCCC--CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHH------HHHHcCCC
Confidence 6666 9999999973 333456678999999999999999999986 54666666300 000 00000000
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
++....+.+.+-.-++-..+++.+++....++-..|+|..++
T Consensus 147 p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 188 (323)
T TIGR01759 147 PPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN 188 (323)
T ss_pred CHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC
Confidence 112223334555555556666677888888887788888664
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0018 Score=61.86 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=98.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
++|.|+|+ |+||+.++..|+.++ .+++++++..+..................-..+.+| .| .+.+++. |+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~----y~~~~~a--Di 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD----YEDLKGA--DI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC----hhhhcCC--CE
Confidence 57999999 999999999998876 489999996443332222111111111111222222 22 3445566 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC---CcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS---SSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS---~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|+-.||. ++.+-.+..+.+..|..-...+.+...+.+....|+.+|- .-.|-.. +........-.-+.+
T Consensus 73 VvitAG~--prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~------k~sg~p~~rvig~gt 144 (313)
T COG0039 73 VVITAGV--PRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAM------KFSGFPKNRVIGSGT 144 (313)
T ss_pred EEEeCCC--CCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHHH------HhcCCCccceecccc
Confidence 9999987 3344455678999999999999999999987656666653 0001000 000000111122334
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCC
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPW 285 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~ 285 (439)
.+..-++-..+++.+++....++-- |.|..
T Consensus 145 ~LDsaR~~~~lae~~~v~~~~V~~~-ViGeH 174 (313)
T COG0039 145 VLDSARFRTFLAEKLGVSPKDVHAY-VIGEH 174 (313)
T ss_pred hHHHHHHHHHHHHHhCCChhHceee-EeccC
Confidence 4555556666666677766666643 44543
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00066 Score=67.43 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=64.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~ 175 (439)
..++|.|.||||++|.++++.|.++ +.+|..+.+....+... ..........|+.+.+.++.. ++++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i---------~~~~~~l~~~~~~~~~~~~~~~~~~~-- 105 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSF---------GSVFPHLITQDLPNLVAVKDADFSDV-- 105 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCc---------hhhCccccCccccceecCCHHHhcCC--
Confidence 5579999999999999999999999 67999998733221110 000111222333333222322 4555
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGL 232 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~ 232 (439)
|+||-+.+.. ....++..+. .+ . +||-.|+.+.+.+
T Consensus 106 DvVf~Alp~~------------------~s~~i~~~~~-~g-~-~VIDlSs~fRl~~ 141 (381)
T PLN02968 106 DAVFCCLPHG------------------TTQEIIKALP-KD-L-KIVDLSADFRLRD 141 (381)
T ss_pred CEEEEcCCHH------------------HHHHHHHHHh-CC-C-EEEEcCchhccCC
Confidence 9999876431 3455666653 44 2 9999999876554
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0018 Score=62.47 Aligned_cols=115 Identities=17% Similarity=0.086 Sum_probs=77.3
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|.|+|++|.||..++..|+.++. ++++++++. .....- +..... ....+.... +.+++.+.+++. |+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~--DL~~~~-~~~~i~~~~--~~~~~~~~~~da--Div 71 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAA--DLSHIP-TAASVKGFS--GEEGLENALKGA--DVV 71 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEc--hhhcCC-cCceEEEec--CCCchHHHcCCC--CEE
Confidence 589999999999999999998875 788888744 111100 000000 111111100 112345677777 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
|-+||.. +....+..+.+..|..-...+.+.+++.++...||.+|-
T Consensus 72 vitaG~~--~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 72 VIPAGVP--RKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred EEeCCCC--CCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 9999973 333455678999999999999999999987767777773
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0081 Score=57.15 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=98.7
Q ss_pred CEEEEECC-CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----C
Q 013602 100 ISVLVTGA-AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----S 174 (439)
Q Consensus 100 ~~VlItGa-tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----~ 174 (439)
..|+|.|. +-=+++.+|..|-+||+-|++.+.+.+ +....+......+.....|..|+.++...+..+ .
T Consensus 4 evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~e------d~~~ve~e~~~dI~~L~ld~~~~~~~~~~l~~f~~~L~ 77 (299)
T PF08643_consen 4 EVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAE------DEKYVESEDRPDIRPLWLDDSDPSSIHASLSRFASLLS 77 (299)
T ss_pred eEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHH------HHHHHHhccCCCCCCcccCCCCCcchHHHHHHHHHHhc
Confidence 47899995 799999999999999999999998221 222222233567888888886655443333322 1
Q ss_pred ---------ccEEEEcccccCc---c--------ccccChhHHHHHHHHH----HHHHHHHHHhcC-CCCeEEEecCCcc
Q 013602 175 ---------FTHVMHLAAQAGV---R--------YAMQNPNSYVHSNIAG----LVSLLEVCKNAN-PQPAIVWASSSSV 229 (439)
Q Consensus 175 ---------~d~Vi~~Ag~~~~---~--------~~~~~~~~~~~~Nv~g----t~~ll~~~~~~~-~~~~~V~~SS~~v 229 (439)
..+..++.|+.-. . .+.+.+.+.++.|+.- +..++..++... ...++|.+.-.-.
T Consensus 78 ~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~Psi~ 157 (299)
T PF08643_consen 78 RPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFNPSIS 157 (299)
T ss_pred CCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeCchh
Confidence 2234444443111 1 1123344667777766 455555566521 1225555553221
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeecccc
Q 013602 230 YGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVY 282 (439)
Q Consensus 230 ~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~ 282 (439)
... ...-.++-.....+.+.+...+++|. +++++.++.|++.
T Consensus 158 ssl-----------~~PfhspE~~~~~al~~~~~~LrrEl~~~~I~V~~i~LG~l~ 202 (299)
T PF08643_consen 158 SSL-----------NPPFHSPESIVSSALSSFFTSLRRELRPHNIDVTQIKLGNLD 202 (299)
T ss_pred hcc-----------CCCccCHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeeeec
Confidence 110 00123556666677777877777775 5999999999973
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0028 Score=53.42 Aligned_cols=76 Identities=22% Similarity=0.220 Sum_probs=51.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.++++|+|.|+ |+.|+.++..|.+.|.+ |+++.|+.+ ......+......+.++.. .+ +.+.+.++
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~-----ra~~l~~~~~~~~~~~~~~--~~---~~~~~~~~-- 76 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPE-----RAEALAEEFGGVNIEAIPL--ED---LEEALQEA-- 76 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHH-----HHHHHHHHHTGCSEEEEEG--GG---HCHHHHTE--
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHH-----HHHHHHHHcCccccceeeH--HH---HHHHHhhC--
Confidence 68899999995 99999999999999986 999999321 1112222222334555443 23 33556666
Q ss_pred cEEEEccccc
Q 013602 176 THVMHLAAQA 185 (439)
Q Consensus 176 d~Vi~~Ag~~ 185 (439)
|+|||+.+..
T Consensus 77 DivI~aT~~~ 86 (135)
T PF01488_consen 77 DIVINATPSG 86 (135)
T ss_dssp SEEEE-SSTT
T ss_pred CeEEEecCCC
Confidence 9999998653
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0028 Score=57.36 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=69.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCC--------------hhHHHHHHHhhh--cCC--eEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYD--------------PSLKKARQALLE--RSG--IFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~--------------~~~~~~~~~~~~--~~~--v~~~~ 157 (439)
+..++|+|.| .|++|+++++.|+..|. +++++|.+.-... ........+.+. .+. ++.+.
T Consensus 19 l~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 19 LLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred hcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 5668999999 69999999999999996 8888887631100 000001111111 133 33444
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
.++ +.+.+.++++++ |+||.+... +. .-..+.+.|++.+. .+|+.+..+.+|
T Consensus 98 ~~i-~~~~~~~~~~~~--D~Vi~~~d~---------~~--------~r~~l~~~~~~~~i--p~i~~~~~g~~G 149 (202)
T TIGR02356 98 ERV-TAENLELLINNV--DLVLDCTDN---------FA--------TRYLINDACVALGT--PLISAAVVGFGG 149 (202)
T ss_pred hcC-CHHHHHHHHhCC--CEEEECCCC---------HH--------HHHHHHHHHHHcCC--CEEEEEeccCeE
Confidence 444 345677788877 999987632 11 22346677888874 788877666554
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0066 Score=61.20 Aligned_cols=172 Identities=14% Similarity=0.105 Sum_probs=98.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhC---CC----eEEEEECCCCCCChhHHHHHHHhhh-----cCCeEEEEcccCCHHHHH
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRR---GD----GVLGLDNFNDYYDPSLKKARQALLE-----RSGIFIVEGDINDMALLK 167 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~---G~----~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~v~~~~~Dl~d~~~~~ 167 (439)
-+|+||||+|.||.+|+-.+++- |. .+++++... ......-...+... ..++.+. .| ..
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~--~~~~l~G~amDL~D~a~pll~~v~i~-~~------~~ 194 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPE--NLEKLKGLVMEVEDLAFPLLRGISVT-TD------LD 194 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCC--chhhHHHHHHHHHHhHHhhcCCcEEE-EC------CH
Confidence 58999999999999999999873 31 345555421 11111111111111 1123332 11 24
Q ss_pred HhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 168 KLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP--QPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 168 ~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~--~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
+.++++ |+||-+||.. +....+..+.++.|..-.....+.+.+.+. . +|+.+.|--+ +..........+..
T Consensus 195 ea~~da--DvvIitag~p--rk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~-~VlVv~tNPv--D~~t~i~~k~apgi 267 (452)
T cd05295 195 VAFKDA--HVIVLLDDFL--IKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDV-KVIVAGRTFL--NLKTSILIKYAPSI 267 (452)
T ss_pred HHhCCC--CEEEECCCCC--CCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEeCCcH--HHHHHHHHHHcCCC
Confidence 667777 9999999973 333345678999999999999999998886 5 5555554111 00000000000000
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
++....+.+.+.--++...++++.|++...|+-..|.|..++
T Consensus 268 P~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~ 309 (452)
T cd05295 268 PRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG 309 (452)
T ss_pred CHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC
Confidence 122233333344445555667777998888888889897665
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0079 Score=58.22 Aligned_cols=169 Identities=13% Similarity=0.122 Sum_probs=97.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
++|.|+|+ |.||..++..|+..| .++++++.+.+....................+... .|.+ .++++ |+
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~dy~----~~~~a--di 74 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KDYS----VTANS--KV 74 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CCHH----HhCCC--CE
Confidence 58999996 999999999999887 47999998654322221111111100111122211 2332 25666 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc---ccCCCCCCCCCCCCCCCCCCChHHH-
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS---VYGLNTKVPFSEKDRTDQPASLYAA- 253 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~---v~g~~~~~~~~e~~~~~~p~~~Y~~- 253 (439)
||-+||... .+..+..+.+..|..-...+.+.+++.++...+|++|--. .|.. ...... ++....+.
T Consensus 75 vvitaG~~~--k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~-----~k~sg~--p~~~viG~g 145 (312)
T cd05293 75 VIVTAGARQ--NEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA-----WKLSGL--PKHRVIGSG 145 (312)
T ss_pred EEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH-----HHHhCC--CHHHEEecC
Confidence 999999732 2334556889999999999999999998776888777310 0000 000000 11111222
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 254 sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
+-+-..++-..+++..++...-++. .|+|..++
T Consensus 146 t~Ld~~R~~~~la~~l~v~~~~v~~-~v~GeHG~ 178 (312)
T cd05293 146 CNLDSARFRYLIAERLGVAPSSVHG-WIIGEHGD 178 (312)
T ss_pred chHHHHHHHHHHHHHhCCChhhEEE-EEeecCCC
Confidence 2223333445556666877777765 45787654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0064 Score=59.18 Aligned_cols=172 Identities=13% Similarity=0.087 Sum_probs=101.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCCCC--CChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHH
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-------GVLGLDNFNDY--YDPSLKKARQAL-LERSGIFIVEGDINDMALLKK 168 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~ 168 (439)
.++|.|+|++|.+|+.++..|+..|. ++.+++.+.+. ............ .....+.+. . ...+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~------~~y~ 76 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-D------DPNV 76 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-c------ChHH
Confidence 35899999999999999999998773 78888874421 221111111111 111122221 1 1235
Q ss_pred hhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc---ccCCCCCCCCCCCCCC
Q 013602 169 LFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSS---VYGLNTKVPFSEKDRT 244 (439)
Q Consensus 169 ~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~---v~g~~~~~~~~e~~~~ 244 (439)
.+++. |+||-+||.. +....+..+.+..|..-...+.+.++++. ....+|.+|--. .|- ..+..+.
T Consensus 77 ~~~da--DiVVitaG~~--~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v------~~k~s~g 146 (326)
T PRK05442 77 AFKDA--DVALLVGARP--RGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALI------AMKNAPD 146 (326)
T ss_pred HhCCC--CEEEEeCCCC--CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHH------HHHHcCC
Confidence 55666 9999999963 33345677899999999999999999855 454777777310 000 0000000
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
.++....+.+-+-.-++-..+++.+++....|+.-.|+|..++
T Consensus 147 ~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~ 189 (326)
T PRK05442 147 LPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA 189 (326)
T ss_pred CCHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC
Confidence 0111222233444455555566667888787776667887654
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0065 Score=58.81 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=74.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
|+|.|.|+ |.+|..++..|+.+| .+|.+++++.+....................... .|. +.++++ |+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d~----~~l~~a--Di 70 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GDY----ADCKGA--DV 70 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CCH----HHhCCC--CE
Confidence 47999997 999999999999999 6899999865432211111111100011222222 232 236666 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
||.+++... ....+..+....|..-...+.+.+++.+....++.++
T Consensus 71 Viita~~~~--~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 71 VVITAGANQ--KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred EEEccCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999998632 2234556788889999999999998887665666665
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0097 Score=58.43 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=77.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
++|.|+|+ |.||+.++..|+.+|. ++.+++.+.+....................+ ..+ .|. +.++++ |+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i-~~~-~dy----~~~~da--Di 108 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKI-LAS-TDY----AVTAGS--DL 108 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEE-EeC-CCH----HHhCCC--CE
Confidence 69999996 9999999999998874 7999998665433322222211111112222 211 122 236666 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
||-+||... ....+..+.+..|..-...+.+.++++++...+|++|
T Consensus 109 VVitAG~~~--k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 109 CIVTAGARQ--IPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred EEECCCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999999732 2334566889999999999999999988776788777
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0085 Score=57.87 Aligned_cols=167 Identities=16% Similarity=0.145 Sum_probs=100.1
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhh-h-cCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALL-E-RSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~-~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+|.|.|+ |.||..++..|+.+|. ++++++.+.+.............. . ...+..... | .+.++++ |
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~----y~~~~~a--D 70 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---D----YDDCADA--D 70 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---C----HHHhCCC--C
Confidence 4789997 9999999999998884 799999865543332222211111 1 113444332 3 3455666 9
Q ss_pred EEEEcccccCccccccC--hhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC---cccCCCCCCCCCCCCCCCCCCChH
Q 013602 177 HVMHLAAQAGVRYAMQN--PNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSS---SVYGLNTKVPFSEKDRTDQPASLY 251 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~--~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~---~v~g~~~~~~~~e~~~~~~p~~~Y 251 (439)
+||-+||... .+..+ -.+.+..|..-...+.+.++++++...+|.+|-- -.|-. ..... . .+....
T Consensus 71 ivvitaG~~~--kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~-----~k~sg-~-p~~rvi 141 (307)
T cd05290 71 IIVITAGPSI--DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA-----ATEFD-Y-PANKVI 141 (307)
T ss_pred EEEECCCCCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH-----HHHhC-c-Chhhee
Confidence 9999999732 22223 4788999999999999999999977566666631 00000 00000 0 111122
Q ss_pred HH-HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 252 AA-TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 252 ~~-sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
+. +-+-.-++-..+++..|+....|+-. |.|..++
T Consensus 142 G~gt~LDs~R~~~~la~~l~v~~~~V~~~-ViGeHGd 177 (307)
T cd05290 142 GTGTMLDTARLRRIVADKYGVDPKNVTGY-VLGEHGS 177 (307)
T ss_pred cccchHHHHHHHHHHHHHhCCCcccEEEE-EEecCCC
Confidence 22 33344455555666678888878764 8887654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0036 Score=60.92 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=77.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCe-EEEEcccCCHHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGI-FIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+.++|.|+|| |.+|..++..|+..| .+|++++++.+......-.. .......+. ..+.+ -+| .+ .++++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl-~~~~~~~~~~~~i~~-~~d---~~-~l~~A-- 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDL-KHFSTLVGSNINILG-TNN---YE-DIKDS-- 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHH-hhhccccCCCeEEEe-CCC---HH-HhCCC--
Confidence 4578999997 999999999999988 68999998665433211111 111110111 11221 123 33 55667
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
|+||.+||... ....+..+.+..|..-...+.+.+.+..+...+|++|-
T Consensus 75 DiVVitag~~~--~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 75 DVVVITAGVQR--KEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999998632 23344567888899888899999988887656777764
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0017 Score=66.49 Aligned_cols=76 Identities=26% Similarity=0.285 Sum_probs=54.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+++|+|+|+|+.+ +|..+++.|+++|++|++.++.... .. ....+.+...++.++.+|..+. .... +|
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~---~~-~~~~~~l~~~~~~~~~~~~~~~-----~~~~--~d 70 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEED---QL-KEALEELGELGIELVLGEYPEE-----FLEG--VD 70 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchH---HH-HHHHHHHHhcCCEEEeCCcchh-----Hhhc--CC
Confidence 5679999999766 9999999999999999999984311 11 1111223344788888888762 2333 49
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+||+++|.
T Consensus 71 ~vv~~~g~ 78 (450)
T PRK14106 71 LVVVSPGV 78 (450)
T ss_pred EEEECCCC
Confidence 99999986
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0096 Score=57.65 Aligned_cols=116 Identities=15% Similarity=0.094 Sum_probs=73.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcC--CeEEEEcccCCHHHHHHhhcccCc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERS--GIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~--~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+++|.|.|+ |.+|..++..|+..|. +|++.+++.+........ ........ ... +.. -+|. +.++++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~d-l~~~~~~~~~~~~-i~~-~~d~----~~~~~a-- 71 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALD-IAEAAPVEGFDTK-ITG-TNDY----EDIAGS-- 71 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHH-HHhhhhhcCCCcE-EEe-CCCH----HHHCCC--
Confidence 378999998 9999999999999875 999999966543211111 11111111 111 111 1222 235666
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
|+||.++|... ....+..+.+..|..-...+++.+.+..+...+|++|-
T Consensus 72 DiVii~~~~p~--~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 72 DVVVITAGVPR--KPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred CEEEECCCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999998632 22234456777888888888888888776656777763
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.004 Score=68.86 Aligned_cols=77 Identities=23% Similarity=0.201 Sum_probs=57.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCC-Ce-------------EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRG-DG-------------VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM 163 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~ 163 (439)
.+|+|+|.|+ |+||+.+++.|++.+ .+ |.+++++. ..........+++..+.+|++|.
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~-------~~a~~la~~~~~~~~v~lDv~D~ 639 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL-------KDAKETVEGIENAEAVQLDVSDS 639 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH-------HHHHHHHHhcCCCceEEeecCCH
Confidence 4679999996 999999999998763 33 77777622 11111111124788899999999
Q ss_pred HHHHHhhcccCccEEEEcccc
Q 013602 164 ALLKKLFDVVSFTHVMHLAAQ 184 (439)
Q Consensus 164 ~~~~~~~~~~~~d~Vi~~Ag~ 184 (439)
+++.++++++ |+||++...
T Consensus 640 e~L~~~v~~~--DaVIsalP~ 658 (1042)
T PLN02819 640 ESLLKYVSQV--DVVISLLPA 658 (1042)
T ss_pred HHHHHhhcCC--CEEEECCCc
Confidence 9999999986 999998853
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0022 Score=60.80 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=56.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
..++|-|||||.|..++++|+++|.+-.+..|+.. ...... ..-+.++-..++.+++.+++.++.. ++|+
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~----kl~~l~----~~LG~~~~~~p~~~p~~~~~~~~~~--~VVl 76 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSA----KLDALR----ASLGPEAAVFPLGVPAALEAMASRT--QVVL 76 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHH----HHHHHH----HhcCccccccCCCCHHHHHHHHhcc--eEEE
Confidence 57999999999999999999999999888888332 111111 1123333334455599999999988 9999
Q ss_pred Eccccc
Q 013602 180 HLAAQA 185 (439)
Q Consensus 180 ~~Ag~~ 185 (439)
||+|+.
T Consensus 77 ncvGPy 82 (382)
T COG3268 77 NCVGPY 82 (382)
T ss_pred eccccc
Confidence 999974
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0053 Score=58.04 Aligned_cols=115 Identities=14% Similarity=0.062 Sum_probs=77.7
Q ss_pred EEEECCCChHHHHHHHHHHhCC----CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 102 VLVTGAAGFVGTHVSAALKRRG----DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
|.|+||.|.+|..++..|+..| .+|++.|++.+............ .... ....+.-..+..+.++++ |+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~--~~~~---~~~~i~~~~d~~~~~~~a--Di 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDA--VEPL---ADIKVSITDDPYEAFKDA--DV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHh--hhhc---cCcEEEECCchHHHhCCC--CE
Confidence 5799998999999999999999 79999998765443332221111 1111 111222122345667777 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
||..++.... .-.+.......|+.-...+.+.+++..+...+|++|
T Consensus 74 Vv~t~~~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 74 VIITAGVGRK--PGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred EEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9999986332 223445677889999999999999888776777776
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.012 Score=54.24 Aligned_cols=74 Identities=24% Similarity=0.421 Sum_probs=57.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~V 178 (439)
|+++|.| .|-+|..+++.|.++|++|++++++.+ ..............+.+|-+|++.++++ ++++ |++
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~~-------~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~a--D~v 70 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGHNVVLIDRDEE-------RVEEFLADELDTHVVIGDATDEDVLEEAGIDDA--DAV 70 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCHH-------HHHHHhhhhcceEEEEecCCCHHHHHhcCCCcC--CEE
Confidence 5789999 599999999999999999999998321 1111122246788999999999999998 7777 988
Q ss_pred EEccc
Q 013602 179 MHLAA 183 (439)
Q Consensus 179 i~~Ag 183 (439)
+=..+
T Consensus 71 va~t~ 75 (225)
T COG0569 71 VAATG 75 (225)
T ss_pred EEeeC
Confidence 85544
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0022 Score=62.81 Aligned_cols=95 Identities=20% Similarity=0.114 Sum_probs=59.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCe---EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDG---VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+++|+|.||||++|.++++.|.++||. +..+.+......... -.+......|+.+. .++++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~---------~~g~~i~v~d~~~~-----~~~~v-- 64 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS---------FKGKELKVEDLTTF-----DFSGV-- 64 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee---------eCCceeEEeeCCHH-----HHcCC--
Confidence 468999999999999999999998874 477776433222110 11233444455432 22455
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV 229 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v 229 (439)
|+||.+++.. -+..+.+.+.+.|. +||=.||..-
T Consensus 65 DvVf~A~g~g------------------~s~~~~~~~~~~G~--~VIDlS~~~R 98 (334)
T PRK14874 65 DIALFSAGGS------------------VSKKYAPKAAAAGA--VVIDNSSAFR 98 (334)
T ss_pred CEEEECCChH------------------HHHHHHHHHHhCCC--EEEECCchhh
Confidence 9999887642 13445555556664 7777777543
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.012 Score=58.41 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=98.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC-e----EEE--E--ECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHh
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD-G----VLG--L--DNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~-~----V~~--~--~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~ 169 (439)
-+|.|+|++|.+|.+++..|+.+|. . |.+ + +++.+......-...... ....++.+. . .+ .+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~-~--~~----y~~ 117 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG-I--DP----YEV 117 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe-c--CC----HHH
Confidence 5899999999999999999998873 2 333 3 554433222221111111 001122211 1 12 345
Q ss_pred hcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc-----ccCCCCCCCCCCCCC
Q 013602 170 FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSS-----VYGLNTKVPFSEKDR 243 (439)
Q Consensus 170 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~-----v~g~~~~~~~~e~~~ 243 (439)
+++. |+||-+||.. +....+..+.+..|..-...+.+.++++. +..++|.+|--. +.-. ...
T Consensus 118 ~kda--DIVVitAG~p--rkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k--------~sg 185 (387)
T TIGR01757 118 FEDA--DWALLIGAKP--RGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMK--------NAP 185 (387)
T ss_pred hCCC--CEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHH--------HcC
Confidence 5666 9999999973 33345667899999999999999999854 554677777310 1000 000
Q ss_pred CCCCCChH-HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 244 TDQPASLY-AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 244 ~~~p~~~Y-~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
. .|.... ..+.+-.-++-..++++.++....|+-+.|.|..++
T Consensus 186 ~-~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd 229 (387)
T TIGR01757 186 N-IPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST 229 (387)
T ss_pred C-CcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC
Confidence 0 111111 233444445555566667888777877778887664
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0067 Score=50.03 Aligned_cols=99 Identities=17% Similarity=0.098 Sum_probs=55.5
Q ss_pred EEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCC-CCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFND-YYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|.|+||||++|..+++.|.++- .++..+..... .+... ..... ...+..-+.++=.+.+.+ .++ |+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~-~~~~~---~~~~~~~~~~~~~~~~~~----~~~--Dvv 70 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPL-SEVFP---HPKGFEDLSVEDADPEEL----SDV--DVV 70 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBH-HHTTG---GGTTTEEEBEEETSGHHH----TTE--SEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCee-ehhcc---ccccccceeEeecchhHh----hcC--CEE
Confidence 68999999999999999999964 46555544333 22211 11111 111122111111333333 444 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV 229 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v 229 (439)
|.+.+.. ....+.+.+.+.|. ++|=.|+..-
T Consensus 71 f~a~~~~------------------~~~~~~~~~~~~g~--~ViD~s~~~R 101 (121)
T PF01118_consen 71 FLALPHG------------------ASKELAPKLLKAGI--KVIDLSGDFR 101 (121)
T ss_dssp EE-SCHH------------------HHHHHHHHHHHTTS--EEEESSSTTT
T ss_pred EecCchh------------------HHHHHHHHHhhCCc--EEEeCCHHHh
Confidence 9887531 13456666677775 7777776553
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0098 Score=50.05 Aligned_cols=109 Identities=23% Similarity=0.286 Sum_probs=69.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------CCh-----hHHHHHHHh----hhcCCeEEEEccc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------YDP-----SLKKARQAL----LERSGIFIVEGDI 160 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------~~~-----~~~~~~~~~----~~~~~v~~~~~Dl 160 (439)
++|+|.| .|.+|+++++.|++.|. +++++|.+.-. +.. .....-++. ...-++..+..++
T Consensus 3 ~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 6899999 59999999999999997 68888764410 000 111111111 1123466666677
Q ss_pred CCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 161 ~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
+.+...++++++ |+||.+... ......+.+.|++.+. .+|+.+..+.+|
T Consensus 82 -~~~~~~~~~~~~--d~vi~~~d~-----------------~~~~~~l~~~~~~~~~--p~i~~~~~g~~G 130 (135)
T PF00899_consen 82 -DEENIEELLKDY--DIVIDCVDS-----------------LAARLLLNEICREYGI--PFIDAGVNGFYG 130 (135)
T ss_dssp -SHHHHHHHHHTS--SEEEEESSS-----------------HHHHHHHHHHHHHTT---EEEEEEEETTEE
T ss_pred -ccccccccccCC--CEEEEecCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeecCEE
Confidence 556778888777 999987532 1123457778888875 888887765544
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0081 Score=61.49 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=56.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHh-hcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKL-FDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~ 177 (439)
|+|+|+|+ |.+|.++++.|.++|++|++++++.+ ..+.. ...++.++.+|.++.+.+.++ ++++ |.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~---------~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a--~~ 68 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEE---------RLRRLQDRLDVRTVVGNGSSPDVLREAGAEDA--DL 68 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHH---------HHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcC--CE
Confidence 57999997 99999999999999999999998221 12222 125788999999999998888 6766 88
Q ss_pred EEEcc
Q 013602 178 VMHLA 182 (439)
Q Consensus 178 Vi~~A 182 (439)
||-+.
T Consensus 69 vi~~~ 73 (453)
T PRK09496 69 LIAVT 73 (453)
T ss_pred EEEec
Confidence 87654
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.013 Score=56.57 Aligned_cols=114 Identities=22% Similarity=0.167 Sum_probs=75.7
Q ss_pred EEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 102 VLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|.|.|+ |++|..++..|+..| .++++++++.+........................ .| .+.++++ |+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~----~~~l~~a--DiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GD----YADAADA--DIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CC----HHHhCCC--CEEE
Confidence 468885 899999999999998 68999998665432222211111111111222211 22 2356666 9999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
.+||.. .....+..+.+..|+.-...+.+.++++++...+|++|-
T Consensus 72 itag~p--~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 72 ITAGAP--RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred EcCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 999863 223345668888999999999999999887767777773
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.012 Score=49.91 Aligned_cols=108 Identities=23% Similarity=0.246 Sum_probs=65.5
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------------CChhHHHHHH--Hhhh-cCCeEEEEcccC
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------------YDPSLKKARQ--ALLE-RSGIFIVEGDIN 161 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~~~~~~~--~~~~-~~~v~~~~~Dl~ 161 (439)
+|+|.|+ |++|+++++.|++.|. ++++++.+.-. +......... .... .-.++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 4899996 9999999999999997 68888765311 1111110011 1111 123444555554
Q ss_pred CHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 162 d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
+. ...+.++++ |+||.+... ......+.++|++.+. .+|..++.+.+|
T Consensus 80 ~~-~~~~~~~~~--diVi~~~d~-----------------~~~~~~l~~~~~~~~i--~~i~~~~~g~~g 127 (143)
T cd01483 80 ED-NLDDFLDGV--DLVIDAIDN-----------------IAVRRALNRACKELGI--PVIDAGGLGLGG 127 (143)
T ss_pred hh-hHHHHhcCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEcCCCcEE
Confidence 43 335666666 999987632 1224567788888875 788777765443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.02 Score=46.50 Aligned_cols=96 Identities=22% Similarity=0.302 Sum_probs=63.3
Q ss_pred EEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEEc
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHL 181 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~~ 181 (439)
|+|.|. |-+|..+++.|.+.+.+|++++++ +...+.....++.++.+|.+|++.++++--. +.+.||-+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d---------~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~-~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRD---------PERVEELREEGVEVIYGDATDPEVLERAGIE-KADAVVIL 69 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESS---------HHHHHHHHHTTSEEEES-TTSHHHHHHTTGG-CESEEEEE
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECC---------cHHHHHHHhcccccccccchhhhHHhhcCcc-ccCEEEEc
Confidence 678885 799999999999988899999982 2223333445699999999999998886322 33777654
Q ss_pred ccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 182 AAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 182 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
.. +. .. ...++..+++..+..++|...
T Consensus 70 ~~---------~d----~~----n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 70 TD---------DD----EE----NLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp SS---------SH----HH----HHHHHHHHHHHTTTSEEEEEE
T ss_pred cC---------CH----HH----HHHHHHHHHHHCCCCeEEEEE
Confidence 42 11 11 234556667655544666444
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.012 Score=56.76 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=73.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCe-EEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGI-FIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
|+|.|.|+ |.+|..++..|+.+|. +|++++...........+ ..+....... ..+.. -+| .++ ++++ |+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d-~~~~~~~~~~~~~i~~-t~d---~~~-~~~a--Di 72 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALD-MYEASPVGGFDTKVTG-TNN---YAD-TANS--DI 72 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHh-hhhhhhccCCCcEEEe-cCC---HHH-hCCC--CE
Confidence 57999996 9999999999999886 899999854422211110 1111000011 11111 022 223 4566 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
||-+||... ....+..+.+..|..-...+++.+.+......+|++|-
T Consensus 73 VIitag~p~--~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 73 VVITAGLPR--KPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred EEEcCCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999998632 22234557888999999999999888876657777773
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.035 Score=53.99 Aligned_cols=120 Identities=12% Similarity=0.056 Sum_probs=76.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+.++|.|.| .|.+|..++..|+..|. +|++++.+.+......-....... ......+.. -+|. +.++++
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~--~~d~----~~l~~a-- 75 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG--TNNY----EDIAGS-- 75 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE--CCCH----HHhCCC--
Confidence 447899999 59999999999999995 899999876653211111111110 111122221 1232 345677
Q ss_pred cEEEEcccccCcccc---ccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 176 THVMHLAAQAGVRYA---MQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~---~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
|+||.+||....... +.+..+.+..|+.-...+.+.+.+..+...+|++|-
T Consensus 76 DiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 76 DVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999987432111 014456788898888889998888886656777774
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.027 Score=52.42 Aligned_cols=112 Identities=21% Similarity=0.162 Sum_probs=68.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCC----------hhHH----HHHHHhh--hcCC--eEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYD----------PSLK----KARQALL--ERSG--IFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~----------~~~~----~~~~~~~--~~~~--v~~~~ 157 (439)
....+|+|.| .|++|+++++.|+..|. +++++|.+.-... .... ..-.+.+ -.+. ++.+.
T Consensus 22 L~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 22 LKASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred HhCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 5567899999 59999999999999995 6777776542110 0000 0001111 1233 44444
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
..+ +.+.+.++++++ |+||.+.. +++ ....+-++|.+.+. .+|+.++.+.+|
T Consensus 101 ~~i-~~~~~~~~~~~~--DlVvd~~D---------~~~--------~r~~ln~~~~~~~i--p~v~~~~~g~~G 152 (240)
T TIGR02355 101 AKL-DDAELAALIAEH--DIVVDCTD---------NVE--------VRNQLNRQCFAAKV--PLVSGAAIRMEG 152 (240)
T ss_pred ccC-CHHHHHHHhhcC--CEEEEcCC---------CHH--------HHHHHHHHHHHcCC--CEEEEEecccEe
Confidence 334 345677788877 99998762 222 23446678888875 788776655544
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.015 Score=53.72 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=69.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCC----------ChhHHH-----H---HHHh-hhcCCeEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYY----------DPSLKK-----A---RQAL-LERSGIFIV 156 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~----------~~~~~~-----~---~~~~-~~~~~v~~~ 156 (439)
..+.+|+|.| .|++|+++++.|+..|. +++++|.+.-.. ...... . .... ...-.+..+
T Consensus 25 L~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~ 103 (231)
T PRK08328 25 LKKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF 103 (231)
T ss_pred HhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 4567899999 59999999999999996 677777544110 000000 0 0011 111234444
Q ss_pred EcccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 013602 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGL 232 (439)
Q Consensus 157 ~~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~ 232 (439)
...+ +.+.+.++++++ |+||.+.. ++. .-..+.++|++.+. .+|+.++.+.+|.
T Consensus 104 ~~~~-~~~~~~~~l~~~--D~Vid~~d---------~~~--------~r~~l~~~~~~~~i--p~i~g~~~g~~G~ 157 (231)
T PRK08328 104 VGRL-SEENIDEVLKGV--DVIVDCLD---------NFE--------TRYLLDDYAHKKGI--PLVHGAVEGTYGQ 157 (231)
T ss_pred eccC-CHHHHHHHHhcC--CEEEECCC---------CHH--------HHHHHHHHHHHcCC--CEEEEeeccCEEE
Confidence 5455 455677788877 99998763 221 12345567888875 7888887777663
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.019 Score=52.96 Aligned_cols=112 Identities=17% Similarity=0.133 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCC---------------CCChhHHHHHH--Hhh-hcCCeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFND---------------YYDPSLKKARQ--ALL-ERSGIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~---------------~~~~~~~~~~~--~~~-~~~~v~~~~ 157 (439)
+..++|+|.| .|++|+++++.|+..|. +++++|.+.- -+......... ... ..-.++.+.
T Consensus 19 L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 19 LKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 5567999999 69999999999999996 6666654331 01111111111 111 112455565
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
.++ +.+.+.++++++ |+||.+... +. .-..+.++|.+.+. .+|+.+..+.+|
T Consensus 98 ~~i-~~~~~~~~~~~~--DvVi~~~d~---------~~--------~r~~l~~~~~~~~i--p~i~~g~~g~~g 149 (228)
T cd00757 98 ERL-DAENAEELIAGY--DLVLDCTDN---------FA--------TRYLINDACVKLGK--PLVSGAVLGFEG 149 (228)
T ss_pred cee-CHHHHHHHHhCC--CEEEEcCCC---------HH--------HHHHHHHHHHHcCC--CEEEEEeccCEE
Confidence 566 356677788877 999988632 21 12356778888874 778777655444
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0093 Score=58.42 Aligned_cols=35 Identities=34% Similarity=0.474 Sum_probs=32.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..|.+|||+||+|.+|..+++.+..+|.+|++.++
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~ 184 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG 184 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC
Confidence 35789999999999999999999999999999887
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0053 Score=62.30 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=58.4
Q ss_pred ccCCCCEEEEECC----------------CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEc
Q 013602 95 RARNGISVLVTGA----------------AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEG 158 (439)
Q Consensus 95 ~~~~~~~VlItGa----------------tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (439)
+.+.||+||||+| ||-.|.+|++.+..+|++|++++-... .....++.++.
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~------------~~~p~~v~~i~- 318 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD------------LADPQGVKVIH- 318 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC------------CCCCCCceEEE-
Confidence 3489999999986 678999999999999999999984111 11234566654
Q ss_pred ccCCHHHHHHhhcc-cCccEEEEcccccCcc
Q 013602 159 DINDMALLKKLFDV-VSFTHVMHLAAQAGVR 188 (439)
Q Consensus 159 Dl~d~~~~~~~~~~-~~~d~Vi~~Ag~~~~~ 188 (439)
+.+.+++.+++.. .+.|++|++|++..+.
T Consensus 319 -V~ta~eM~~av~~~~~~Di~I~aAAVaDyr 348 (475)
T PRK13982 319 -VESARQMLAAVEAALPADIAIFAAAVADWR 348 (475)
T ss_pred -ecCHHHHHHHHHhhCCCCEEEEecccccee
Confidence 4456666665543 3469999999986654
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0064 Score=50.71 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=43.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA 164 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~ 164 (439)
++++|++.|. | .|.+++..|.+.|++|++++.+.. ..+......+.++..|+.+++
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~---------aV~~a~~~~~~~v~dDlf~p~ 71 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEK---------AVEKAKKLGLNAFVDDLFNPN 71 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHH---------HHHHHHHhCCeEEECcCCCCC
Confidence 4578999994 6 999999999999999999998332 122223347899999998764
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.37 Score=41.25 Aligned_cols=190 Identities=15% Similarity=0.119 Sum_probs=104.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC--CH-----HHHHHhhcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN--DM-----ALLKKLFDV 172 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d~-----~~~~~~~~~ 172 (439)
.+|+|-||-|-+|++.++.+.+++|-|.-++...+.. ...-..+..|-+ .. +.+.+.+.+
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~-------------Ad~sI~V~~~~swtEQe~~v~~~vg~sL~g 70 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQ-------------ADSSILVDGNKSWTEQEQSVLEQVGSSLQG 70 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccc-------------ccceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence 5799999999999999999999999999988733210 001112222221 11 234455566
Q ss_pred cCccEEEEcccccCcc-cc----ccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc-ccCCCCCCCCCCCCCCCC
Q 013602 173 VSFTHVMHLAAQAGVR-YA----MQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS-VYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~-~~----~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~-v~g~~~~~~~~e~~~~~~ 246 (439)
.+.|.||+.||--... .. ..+.+..+.--+....--...+.++=...-+..+..+. ..+ ..+
T Consensus 71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~------------gTP 138 (236)
T KOG4022|consen 71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALG------------GTP 138 (236)
T ss_pred cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccC------------CCC
Confidence 6789999999853221 11 11222233333322211122222221111333443322 211 113
Q ss_pred CCChHHHHHHHHHHHHHHHHhH-hCC----cEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 247 PASLYAATKKAGEEIAHTYNHI-YGL----SLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~-~gi----~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
..-.|+.+|.+.-.++++++.+ .|+ -+..|-|-.+..|-. ++..+- ...-+|+
T Consensus 139 gMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMN---------------RKwMP~-------ADfssWT 196 (236)
T KOG4022|consen 139 GMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMN---------------RKWMPN-------ADFSSWT 196 (236)
T ss_pred cccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccc---------------cccCCC-------CcccCcc
Confidence 4578999999999999998766 344 344555555555522 222222 1233577
Q ss_pred eHHHHHHHHHHHHhh
Q 013602 322 YIDDIVKGCLAALDT 336 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~ 336 (439)
..+-+++.++.-...
T Consensus 197 PL~fi~e~flkWtt~ 211 (236)
T KOG4022|consen 197 PLSFISEHFLKWTTE 211 (236)
T ss_pred cHHHHHHHHHHHhcc
Confidence 778888777765543
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.01 Score=57.80 Aligned_cols=35 Identities=37% Similarity=0.534 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..+.+|||+||+|.+|..+++.+...|.+|++.++
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~ 171 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG 171 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC
Confidence 35789999999999999999999899999999887
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=48.37 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=55.6
Q ss_pred CEEEEECCCChHHHHHHHHHHh-CCCeEEEEE-CCCCCC-ChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKR-RGDGVLGLD-NFNDYY-DPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~-~G~~V~~~~-r~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
++|.|.|++|-+|+.+++.+.+ .|.++.+.. |..+.. ..+.. +.. +.. ...+.-.++++++++.+ |
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g----~~~---~~~--~~~~~v~~~l~~~~~~~--D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVG----ELA---GIG--PLGVPVTDDLEELLEEA--D 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCH----HHC---TSS--T-SSBEBS-HHHHTTH---S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhh----hhh---CcC--CcccccchhHHHhcccC--C
Confidence 5799999999999999999998 678866654 422111 11111 000 000 11111125677788775 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
+||.+.- ...+...++.+.+++. .+|.-+|
T Consensus 70 VvIDfT~------------------p~~~~~~~~~~~~~g~--~~ViGTT 99 (124)
T PF01113_consen 70 VVIDFTN------------------PDAVYDNLEYALKHGV--PLVIGTT 99 (124)
T ss_dssp EEEEES-------------------HHHHHHHHHHHHHHT---EEEEE-S
T ss_pred EEEEcCC------------------hHHhHHHHHHHHhCCC--CEEEECC
Confidence 9998752 2245667888888874 5554443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.027 Score=51.32 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=67.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCC---CCC-----------ChhHHHHHH---HhhhcCCeEEEEc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFN---DYY-----------DPSLKKARQ---ALLERSGIFIVEG 158 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~---~~~-----------~~~~~~~~~---~~~~~~~v~~~~~ 158 (439)
+...+|+|.| .|++|+++++.|++.|. +++++|.+. +.. ......... +....-.++.+..
T Consensus 26 L~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 26 LKKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred HhCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 4567899999 59999999999999997 588888763 110 011111111 1111124445555
Q ss_pred ccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCcccC
Q 013602 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA-NPQPAIVWASSSSVYG 231 (439)
Q Consensus 159 Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~~V~~SS~~v~g 231 (439)
.+++ +.+.++++++ |+||.+. +++. .-..+.+.|.+. +. .+|+.+..+-|+
T Consensus 105 ~i~~-~~~~~~~~~~--DvVI~a~---------D~~~--------~r~~l~~~~~~~~~~--p~I~~~~~~~~~ 156 (212)
T PRK08644 105 KIDE-DNIEELFKDC--DIVVEAF---------DNAE--------TKAMLVETVLEHPGK--KLVAASGMAGYG 156 (212)
T ss_pred ecCH-HHHHHHHcCC--CEEEECC---------CCHH--------HHHHHHHHHHHhCCC--CEEEeehhhccC
Confidence 5554 5567778777 9999874 2221 223456677776 53 777776554444
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.042 Score=51.30 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=68.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCC---------------hhHHHHHH---HhhhcCCeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYD---------------PSLKKARQ---ALLERSGIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~---------------~~~~~~~~---~~~~~~~v~~~~ 157 (439)
...++|+|.|+ |++|+++++.|+..|. +++++|.+.-... ........ +....-.++.+.
T Consensus 30 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 30 LKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred hcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 56689999997 9999999999999996 6777765442110 01100011 111122445555
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
..++ .+.+.++++++ |+||.+.. ++. .-..+.++|.+.+. .+|+.++.+.+|
T Consensus 109 ~~i~-~~~~~~~~~~~--DiVi~~~D---------~~~--------~r~~ln~~~~~~~i--p~v~~~~~g~~G 160 (245)
T PRK05690 109 ARLD-DDELAALIAGH--DLVLDCTD---------NVA--------TRNQLNRACFAAKK--PLVSGAAIRMEG 160 (245)
T ss_pred ccCC-HHHHHHHHhcC--CEEEecCC---------CHH--------HHHHHHHHHHHhCC--EEEEeeeccCCc
Confidence 5554 45567778877 99998762 222 22356677888874 777766554443
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.016 Score=59.19 Aligned_cols=121 Identities=15% Similarity=0.057 Sum_probs=71.2
Q ss_pred EECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEEccc
Q 013602 104 VTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAA 183 (439)
Q Consensus 104 ItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~~Ag 183 (439)
|+||+|++|..+++.|...|++|+...+... ..... +..+++.+++-+-
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~---------~~~~~----------------------~~~~~~~~~~d~~ 91 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGYDVVANNDGGL---------TWAAG----------------------WGDRFGALVFDAT 91 (450)
T ss_pred EEccCchhHHHHHHHHhhCCCeeeecCcccc---------ccccC----------------------cCCcccEEEEECC
Confidence 7888999999999999999999999765211 00000 1112232222111
Q ss_pred ccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 013602 184 QAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAH 263 (439)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~ 263 (439)
. ...++..... .......++.+.. ..+||+++|.... .....|+.+|.+.+.+++
T Consensus 92 ~------~~~~~~l~~~-~~~~~~~l~~l~~---~griv~i~s~~~~---------------~~~~~~~~akaal~gl~r 146 (450)
T PRK08261 92 G------ITDPADLKAL-YEFFHPVLRSLAP---CGRVVVLGRPPEA---------------AADPAAAAAQRALEGFTR 146 (450)
T ss_pred C------CCCHHHHHHH-HHHHHHHHHhccC---CCEEEEEcccccc---------------CCchHHHHHHHHHHHHHH
Confidence 0 0111211111 1112222333322 2399999986542 122359999999999999
Q ss_pred HHHhHh--CCcEEEEeecc
Q 013602 264 TYNHIY--GLSLTGLRFFT 280 (439)
Q Consensus 264 ~~~~~~--gi~~~ilrpg~ 280 (439)
.+++++ ++++..|.|+.
T Consensus 147 sla~E~~~gi~v~~i~~~~ 165 (450)
T PRK08261 147 SLGKELRRGATAQLVYVAP 165 (450)
T ss_pred HHHHHhhcCCEEEEEecCC
Confidence 998885 78888888764
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.008 Score=52.57 Aligned_cols=56 Identities=23% Similarity=0.213 Sum_probs=46.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+++|+|+|+...+|..+++.|.++|.+|+++.|. .+.+.+.+.++ |
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~------------------------------~~~l~~~l~~a--D 89 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK------------------------------TKNLKEHTKQA--D 89 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC------------------------------chhHHHHHhhC--C
Confidence 688999999986678999999999999999999882 13455667777 9
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+||.+.+.
T Consensus 90 iVIsat~~ 97 (168)
T cd01080 90 IVIVAVGK 97 (168)
T ss_pred EEEEcCCC
Confidence 99988764
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.013 Score=50.39 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=47.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.++++|+|+|+ |.+|..+++.|.+.| ++|++.+|+.+ ......+.... ..+..+..+.+ ++++++
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~-----~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~-- 82 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLE-----KAKALAERFGE---LGIAIAYLDLE---ELLAEA-- 82 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHH-----HHHHHHHHHhh---cccceeecchh---hccccC--
Confidence 45689999997 999999999999996 78999998322 11111111111 11222333433 335555
Q ss_pred cEEEEccccc
Q 013602 176 THVMHLAAQA 185 (439)
Q Consensus 176 d~Vi~~Ag~~ 185 (439)
|+||++....
T Consensus 83 Dvvi~~~~~~ 92 (155)
T cd01065 83 DLIINTTPVG 92 (155)
T ss_pred CEEEeCcCCC
Confidence 9999998653
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0099 Score=58.06 Aligned_cols=96 Identities=20% Similarity=0.182 Sum_probs=57.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCe---EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDG---VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+++|.|+||||++|.++++.|.+++|. +..+..... .... ....+ ..+++.+.+.. + ++++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~-aG~~--------l~~~~---~~l~~~~~~~~-~-~~~v-- 67 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSES-AGHS--------VPFAG---KNLRVREVDSF-D-FSQV-- 67 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECccc-CCCe--------eccCC---cceEEeeCChH-H-hcCC--
Confidence 378999999999999999999988763 334433111 1000 00111 22344333322 2 3555
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCccc
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVY 230 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~ 230 (439)
|+||-+++.. -...+++.+.+.|. ++|=.|+..-+
T Consensus 68 D~vFla~p~~------------------~s~~~v~~~~~~G~--~VIDlS~~fR~ 102 (336)
T PRK05671 68 QLAFFAAGAA------------------VSRSFAEKARAAGC--SVIDLSGALPS 102 (336)
T ss_pred CEEEEcCCHH------------------HHHHHHHHHHHCCC--eEEECchhhcC
Confidence 9999876421 12347777777774 78888887654
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.011 Score=57.99 Aligned_cols=77 Identities=25% Similarity=0.166 Sum_probs=52.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhc--cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFD--VV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~--~~ 173 (439)
..|+.|||.||+|++|.+.++.+...| ..|+..|. .......+.+ +.. ...|..+++-+++..+ .-
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s-------~e~~~l~k~l---GAd-~vvdy~~~~~~e~~kk~~~~ 224 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACS-------KEKLELVKKL---GAD-EVVDYKDENVVELIKKYTGK 224 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcc-------cchHHHHHHc---CCc-EeecCCCHHHHHHHHhhcCC
Confidence 467899999999999999999999999 56666665 1111122222 222 2347777666665555 33
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
++|+|++|+|.
T Consensus 225 ~~DvVlD~vg~ 235 (347)
T KOG1198|consen 225 GVDVVLDCVGG 235 (347)
T ss_pred CccEEEECCCC
Confidence 67999999985
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.036 Score=53.33 Aligned_cols=164 Identities=15% Similarity=0.101 Sum_probs=96.6
Q ss_pred EECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHhhcccCccEEEE
Q 013602 104 VTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDMALLKKLFDVVSFTHVMH 180 (439)
Q Consensus 104 ItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~ 180 (439)
|.| .|.||..++..|+.++. ++.+++++.+............... ...+.+. . .|. +.++++ |+||-
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~--~~~----~~~~da--DivVi 70 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-S--GDY----SDCKDA--DLVVI 70 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-c--CCH----HHHCCC--CEEEE
Confidence 456 59999999999998874 7999998655433222221111111 1223332 1 232 456666 99999
Q ss_pred cccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc---ccCCCCCCCCCCCCCCCCCCChHHH-HHH
Q 013602 181 LAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS---VYGLNTKVPFSEKDRTDQPASLYAA-TKK 256 (439)
Q Consensus 181 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~---v~g~~~~~~~~e~~~~~~p~~~Y~~-sK~ 256 (439)
+||.. +.+..+..+.+..|..-...+.+.++++++...+|.+|--. .|-. ...... ++....+. +.+
T Consensus 71 tag~~--rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~-----~~~sg~--p~~~viG~gt~L 141 (299)
T TIGR01771 71 TAGAP--QKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA-----WKLSGF--PKNRVIGSGTVL 141 (299)
T ss_pred CCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----HHHhCC--CHHHEEeccchH
Confidence 99973 23334566899999999999999999988776788777410 0000 000000 01111222 223
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
-..++-..+++..++...-++. .|+|..++
T Consensus 142 Ds~R~~~~la~~l~v~~~~V~~-~v~GeHG~ 171 (299)
T TIGR01771 142 DTARLRYLLAEKLGVDPQSVHA-YIIGEHGD 171 (299)
T ss_pred HHHHHHHHHHHHhCcCcCeEEE-EEEecCCC
Confidence 3344555556667887777774 48887654
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.022 Score=51.32 Aligned_cols=114 Identities=20% Similarity=0.240 Sum_probs=69.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCC---------C---hhHHHHH--------HHhhhcCCeEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYY---------D---PSLKKAR--------QALLERSGIFI 155 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~---------~---~~~~~~~--------~~~~~~~~v~~ 155 (439)
....+|+|.|+ |++|.++++.|+..|. +++++|.+.-.. . ....+.+ ++....-.++.
T Consensus 17 L~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 17 LRSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred HhhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 45578999996 5599999999999996 688887653210 0 0000001 11111224455
Q ss_pred EEcccCC-HHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 013602 156 VEGDIND-MALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGL 232 (439)
Q Consensus 156 ~~~Dl~d-~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~ 232 (439)
+..++.+ .+...++++.+ |+||.+-. + ......+-+.|++.+. .+|+.++.+.||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~--dvVi~~~d---------~--------~~~~~~ln~~c~~~~i--p~i~~~~~G~~G~ 152 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQKF--TLVIATEE---------N--------YERTAKVNDVCRKHHI--PFISCATYGLIGY 152 (198)
T ss_pred EecccccchhhHHHHHhCC--CEEEECCC---------C--------HHHHHHHHHHHHHcCC--CEEEEEeecCEEE
Confidence 5555542 44566777766 99986632 1 1123456688888885 8889888777763
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.014 Score=59.66 Aligned_cols=77 Identities=23% Similarity=0.208 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+.+|+|+|||+.+ +|..+++.|+++|++|++.++....... ....+...++.+..++. ...+ +.. .+|
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~-----~~~~l~~~g~~~~~~~~--~~~~---~~~-~~d 70 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENP-----EAQELLEEGIKVICGSH--PLEL---LDE-DFD 70 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchh-----HHHHHHhcCCEEEeCCC--CHHH---hcC-cCC
Confidence 4678999999866 9999999999999999999874422111 11122234566554331 1111 222 259
Q ss_pred EEEEccccc
Q 013602 177 HVMHLAAQA 185 (439)
Q Consensus 177 ~Vi~~Ag~~ 185 (439)
+||+++|+.
T Consensus 71 ~vV~s~gi~ 79 (447)
T PRK02472 71 LMVKNPGIP 79 (447)
T ss_pred EEEECCCCC
Confidence 999999874
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.041 Score=52.85 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHH---HHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMAL---LKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---~~~~~~~~ 173 (439)
..+++|+|+|++|.+|..+++.+...|.+|++++++.. ..+.....++.. ..|..+.+. +.+...+.
T Consensus 143 ~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~---------~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 212 (325)
T cd08253 143 KAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAE---------GAELVRQAGADA-VFNYRAEDLADRILAATAGQ 212 (325)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHH---------HHHHHHHcCCCE-EEeCCCcCHHHHHHHHcCCC
Confidence 35789999999999999999999999999999988321 111111123322 234444333 33343434
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|+++++++.
T Consensus 213 ~~d~vi~~~~~ 223 (325)
T cd08253 213 GVDVIIEVLAN 223 (325)
T ss_pred ceEEEEECCch
Confidence 57999999863
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.026 Score=55.06 Aligned_cols=76 Identities=28% Similarity=0.267 Sum_probs=47.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC---HHHHHHhhcccCc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND---MALLKKLFDVVSF 175 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~~~~~~~~~~~ 175 (439)
+.+|||+||+|++|...++-+...|+.|++.... ..+ .+.....+...+ .|..+ .+.++++..+..+
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s------~~k---~~~~~~lGAd~v-i~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS------SEK---LELLKELGADHV-INYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecC------HHH---HHHHHhcCCCEE-EcCCcccHHHHHHHHcCCCCc
Confidence 7899999999999999999999999665555541 111 112222222111 12333 2345555555457
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+|++..|-
T Consensus 213 Dvv~D~vG~ 221 (326)
T COG0604 213 DVVLDTVGG 221 (326)
T ss_pred eEEEECCCH
Confidence 999998874
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0083 Score=56.34 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=56.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
...++|++.| +|-+|++++.++.+.|.+|+++||..+-... +- --.-+.+|+.|.++++.+++..+||
T Consensus 10 ~~a~kvmLLG-SGELGKEvaIe~QRLG~eViAVDrY~~APAm------qV-----Ahrs~Vi~MlD~~al~avv~rekPd 77 (394)
T COG0027 10 PQATKVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAM------QV-----AHRSYVIDMLDGDALRAVVEREKPD 77 (394)
T ss_pred CCCeEEEEec-CCccchHHHHHHHhcCCEEEEecCcCCChhh------hh-----hhheeeeeccCHHHHHHHHHhhCCC
Confidence 3456799999 8999999999999999999999994432111 10 1123567999999999999999999
Q ss_pred EEEE
Q 013602 177 HVMH 180 (439)
Q Consensus 177 ~Vi~ 180 (439)
.||-
T Consensus 78 ~IVp 81 (394)
T COG0027 78 YIVP 81 (394)
T ss_pred eeee
Confidence 9774
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.033 Score=53.71 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=67.7
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCC----------ChhHHHHH----HHh----hhcCCeEEEEcccC
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYY----------DPSLKKAR----QAL----LERSGIFIVEGDIN 161 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~----------~~~~~~~~----~~~----~~~~~v~~~~~Dl~ 161 (439)
+|||.|+ |++|.++++.|+..|. +++++|.+.-.. .....+.+ .+. ...-.+..+..++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 4899995 9999999999999996 677777544110 01111111 111 11234666777787
Q ss_pred CHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 162 d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
+.....++++++ |+||.+. ++. ..-..+-+.|...+. .+|...+.+.+|
T Consensus 80 ~~~~~~~f~~~~--DvVv~a~---------Dn~--------~ar~~in~~c~~~~i--p~I~~gt~G~~G 128 (312)
T cd01489 80 DPDFNVEFFKQF--DLVFNAL---------DNL--------AARRHVNKMCLAADV--PLIESGTTGFLG 128 (312)
T ss_pred CccchHHHHhcC--CEEEECC---------CCH--------HHHHHHHHHHHHCCC--CEEEEecCccee
Confidence 654455777777 9999765 222 223446677777774 788877766655
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.027 Score=54.67 Aligned_cols=34 Identities=41% Similarity=0.539 Sum_probs=31.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.+.+|+|+||+|.+|..+++.+...|.+|+++++
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~ 195 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTR 195 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeC
Confidence 4678999999999999999999999999999987
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.017 Score=55.33 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=49.7
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
...+++|+|+|. |.+|+.+++.|...|.+|++.+|+.. ........+...+ +.+.+.+++++.
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~---------~~~~~~~~g~~~~-----~~~~l~~~l~~a-- 210 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSA---------DLARITEMGLIPF-----PLNKLEEKVAEI-- 210 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHCCCeee-----cHHHHHHHhccC--
Confidence 467899999995 99999999999999999999998321 1111111222222 234567777777
Q ss_pred cEEEEcc
Q 013602 176 THVMHLA 182 (439)
Q Consensus 176 d~Vi~~A 182 (439)
|+||++.
T Consensus 211 DiVint~ 217 (287)
T TIGR02853 211 DIVINTI 217 (287)
T ss_pred CEEEECC
Confidence 9999976
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.037 Score=53.71 Aligned_cols=101 Identities=19% Similarity=0.162 Sum_probs=63.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhh---ccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLF---DVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~---~~~ 173 (439)
..+.+|+|+|+++.+|..+++.+...|++|++++++.. +.......+.. ...|..+.+..+.+. ...
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSED---------KLERAKELGAD-YVIDYRKEDFVREVRELTGKR 234 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH---------HHHHHHHcCCC-eEEecCChHHHHHHHHHhCCC
Confidence 35679999999999999999999999999999987321 11111111221 123555554444333 333
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
.+|++++++|... ....++.++..| ++|.+++..
T Consensus 235 ~~d~~i~~~g~~~------------------~~~~~~~l~~~G---~~v~~~~~~ 268 (342)
T cd08266 235 GVDVVVEHVGAAT------------------WEKSLKSLARGG---RLVTCGATT 268 (342)
T ss_pred CCcEEEECCcHHH------------------HHHHHHHhhcCC---EEEEEecCC
Confidence 5799999987310 123344444443 899988654
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.034 Score=54.88 Aligned_cols=112 Identities=17% Similarity=0.049 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------------CChhHHHHH---HHhhhcCCeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------------YDPSLKKAR---QALLERSGIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~~~~~~---~~~~~~~~v~~~~ 157 (439)
+.+.+|+|.|+ |++|+++++.|+..|. +++++|.+.-. +........ .+....-.++.+.
T Consensus 26 L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 26 LFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 56679999995 9999999999999996 77777765410 001111001 1111122445555
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
.+++ .+...++++++ |+||.+.. ++ ..-..+.++|.+.+. .+|+.++.+.+|
T Consensus 105 ~~i~-~~~~~~~~~~~--DvVvd~~d---------~~--------~~r~~~n~~c~~~~i--p~v~~~~~g~~g 156 (355)
T PRK05597 105 RRLT-WSNALDELRDA--DVILDGSD---------NF--------DTRHLASWAAARLGI--PHVWASILGFDA 156 (355)
T ss_pred eecC-HHHHHHHHhCC--CEEEECCC---------CH--------HHHHHHHHHHHHcCC--CEEEEEEecCeE
Confidence 5555 45566777777 99998863 22 122345677888875 788877655544
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.016 Score=57.63 Aligned_cols=75 Identities=17% Similarity=0.086 Sum_probs=53.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
...+|+|+|+ |.+|..+++.|...|.+|++++|+.+ +.+......-..+..+..+.+.+.+.+++. |+
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~---------~~~~l~~~~g~~v~~~~~~~~~l~~~l~~a--Dv 233 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINID---------RLRQLDAEFGGRIHTRYSNAYEIEDAVKRA--DL 233 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHH---------HHHHHHHhcCceeEeccCCHHHHHHHHccC--CE
Confidence 4467999986 99999999999999999999998321 111111111112334566778888888877 99
Q ss_pred EEEcccc
Q 013602 178 VMHLAAQ 184 (439)
Q Consensus 178 Vi~~Ag~ 184 (439)
||++++.
T Consensus 234 VI~a~~~ 240 (370)
T TIGR00518 234 LIGAVLI 240 (370)
T ss_pred EEEcccc
Confidence 9998754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.01 Score=54.94 Aligned_cols=119 Identities=21% Similarity=0.143 Sum_probs=74.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+-+|.|.||.|+||+-|...|. ....|.-+....-...+.. ...+.+-+-.......+-++.+++++++. |+
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GV----aaDlSHI~T~s~V~g~~g~~~L~~al~~a--dv 99 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGV----AADLSHINTNSSVVGFTGADGLENALKGA--DV 99 (345)
T ss_pred CcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcc----cccccccCCCCceeccCChhHHHHHhcCC--CE
Confidence 45689999999999999988775 5543333322110000000 00000111111122334467899999999 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
||--||+ ++.+--..++.|++|---...|..++.+.-+...+.++|
T Consensus 100 VvIPAGV--PRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs 145 (345)
T KOG1494|consen 100 VVIPAGV--PRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS 145 (345)
T ss_pred EEecCCC--CCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence 9999997 333323346799999999999999998877664666665
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.011 Score=56.37 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=33.0
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
...||+|+|.|++|.+|+.++..|+++|++|+++.|
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 368999999999889999999999999999988876
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.04 Score=53.40 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=62.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..|++|+|+|+. ++|...++.+...|++|++++|+.+ +.+...+-+...+. |-+|++.++++.+. +|
T Consensus 165 ~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~---------K~e~a~~lGAd~~i-~~~~~~~~~~~~~~--~d 231 (339)
T COG1064 165 KPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEE---------KLELAKKLGADHVI-NSSDSDALEAVKEI--AD 231 (339)
T ss_pred CCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChH---------HHHHHHHhCCcEEE-EcCCchhhHHhHhh--Cc
Confidence 457899999975 9999999999889999999999332 12111122222222 22266666655554 49
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
++|++++ .. -....+++++..| +++.+.-
T Consensus 232 ~ii~tv~-~~-----------------~~~~~l~~l~~~G---~~v~vG~ 260 (339)
T COG1064 232 AIIDTVG-PA-----------------TLEPSLKALRRGG---TLVLVGL 260 (339)
T ss_pred EEEECCC-hh-----------------hHHHHHHHHhcCC---EEEEECC
Confidence 9999986 21 0234566666666 8887773
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.047 Score=48.15 Aligned_cols=108 Identities=23% Similarity=0.212 Sum_probs=63.6
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC-eEEEEECCC---CCCC----------hhHHHHHHHhh----hcCCeEEEEcccCC
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFN---DYYD----------PSLKKARQALL----ERSGIFIVEGDIND 162 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~---~~~~----------~~~~~~~~~~~----~~~~v~~~~~Dl~d 162 (439)
+|+|.| .|++|+++++.|++.|. +++++|.+. +... ..+.....+.+ ..-++..+...+.+
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 489999 49999999999999997 599988865 1110 00011111111 12244455555543
Q ss_pred HHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCcccC
Q 013602 163 MALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA-NPQPAIVWASSSSVYG 231 (439)
Q Consensus 163 ~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~~V~~SS~~v~g 231 (439)
+.+.++++++ |+||.+.. ++. .-..+.+.+.+. +. .+|+.+..+-|+
T Consensus 80 -~~~~~~l~~~--DlVi~~~d---------~~~--------~r~~i~~~~~~~~~i--p~i~~~~~~~~~ 127 (174)
T cd01487 80 -NNLEGLFGDC--DIVVEAFD---------NAE--------TKAMLAESLLGNKNK--PVVCASGMAGFG 127 (174)
T ss_pred -hhHHHHhcCC--CEEEECCC---------CHH--------HHHHHHHHHHHHCCC--CEEEEehhhccC
Confidence 5677788877 99998742 221 123455666555 53 677665544444
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0055 Score=59.38 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=30.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
++|.|+| .|.+|..++..|+++|++|++.+|+.
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 5799999 79999999999999999999999954
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.017 Score=55.01 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=32.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFN 133 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~ 133 (439)
..+++|+|+|+ |++|+.++..|.+.| .+|++++|+.
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 57789999996 999999999999999 7999999943
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.085 Score=50.89 Aligned_cols=112 Identities=18% Similarity=0.126 Sum_probs=69.8
Q ss_pred EEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhc--CCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLER--SGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~--~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
|.|.|+ |.+|..++..|+.+|. +|++++++.+...... ......... .... +.. -+| . +.++++ |+|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~-~dl~~~~~~~~~~~~-I~~-t~d---~-~~l~dA--DiV 70 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKA-LDISQAAPILGSDTK-VTG-TND---Y-EDIAGS--DVV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHH-HHHHHhhhhcCCCeE-EEE-cCC---H-HHhCCC--CEE
Confidence 468997 9999999999998876 9999999754321111 111111111 1111 111 022 2 235677 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|.++|... ....+..+.+..|..-...+++.+.+..+...+|++|
T Consensus 71 Iit~g~p~--~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 71 VITAGIPR--KPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred EEecCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99998632 2223344567778888888888888887664666666
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.014 Score=57.29 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=59.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEE-EcccCCHHHHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIV-EGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~~~~~~~~~~~d 176 (439)
+++|+|.||||++|.++++.|.++ +++++.+++..+....... . .+.+..+ ..++.+.+.. .++++ |
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~-----~--~~~~~~~~~~~~~~~~~~--~~~~v--D 70 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD-----V--HPHLRGLVDLVLEPLDPE--ILAGA--D 70 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH-----h--CcccccccCceeecCCHH--HhcCC--C
Confidence 378999999999999999999987 6788887763221111100 0 0111111 1233333322 33444 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCccc
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVY 230 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~ 230 (439)
+||-+.... ....+...+.+.|. ++|=.|+..-+
T Consensus 71 ~Vf~alP~~------------------~~~~~v~~a~~aG~--~VID~S~~fR~ 104 (343)
T PRK00436 71 VVFLALPHG------------------VSMDLAPQLLEAGV--KVIDLSADFRL 104 (343)
T ss_pred EEEECCCcH------------------HHHHHHHHHHhCCC--EEEECCcccCC
Confidence 998766421 12345555656663 89999986655
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.026 Score=54.30 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=49.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+++|+|.|. |.+|..++..|.+.|.+|++.+|+.. ........+..++ +.+.+.+.+++. |
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~---------~~~~~~~~G~~~~-----~~~~l~~~l~~a--D 212 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSA---------HLARITEMGLSPF-----HLSELAEEVGKI--D 212 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHH---------HHHHHHHcCCeee-----cHHHHHHHhCCC--C
Confidence 56899999995 99999999999999999999999321 1111122234433 234566777776 9
Q ss_pred EEEEcc
Q 013602 177 HVMHLA 182 (439)
Q Consensus 177 ~Vi~~A 182 (439)
+||+++
T Consensus 213 iVI~t~ 218 (296)
T PRK08306 213 IIFNTI 218 (296)
T ss_pred EEEECC
Confidence 999976
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.065 Score=54.82 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=55.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhh-cccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLF-DVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~-~~~~~ 175 (439)
...++|+|.|+ |.+|..+++.|.++|++|++++++. ...........++.++.+|.++.+.++++- +++
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~-------~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a-- 298 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDP-------ERAEELAEELPNTLVLHGDGTDQELLEEEGIDEA-- 298 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCH-------HHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccC--
Confidence 44689999996 9999999999999999999999722 111111111246788999999999886543 444
Q ss_pred cEEEEcc
Q 013602 176 THVMHLA 182 (439)
Q Consensus 176 d~Vi~~A 182 (439)
|.||-+.
T Consensus 299 ~~vi~~~ 305 (453)
T PRK09496 299 DAFIALT 305 (453)
T ss_pred CEEEECC
Confidence 8877443
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.012 Score=57.79 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=56.3
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEE---EEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVL---GLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
+|+|.||||++|.++++.|.+++|.++ .+.+........ ...+......|+. . ..++++ |+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~---------~~~~~~~~~~~~~-~----~~~~~~--D~ 64 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKV---------TFKGKELEVNEAK-I----ESFEGI--DI 64 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCee---------eeCCeeEEEEeCC-h----HHhcCC--CE
Confidence 489999999999999999999888644 344532211111 0123444555553 1 223555 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV 229 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v 229 (439)
||.+++... +..++..+.+.|. ++|=.||..-
T Consensus 65 v~~a~g~~~------------------s~~~a~~~~~~G~--~VID~ss~~R 96 (339)
T TIGR01296 65 ALFSAGGSV------------------SKEFAPKAAKCGA--IVIDNTSAFR 96 (339)
T ss_pred EEECCCHHH------------------HHHHHHHHHHCCC--EEEECCHHHh
Confidence 999887421 3345555555664 6776676443
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.12 Score=46.60 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=53.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECC---CCCCC------hhHH----HHHHHhh----hcCCeEEEEc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNF---NDYYD------PSLK----KARQALL----ERSGIFIVEG 158 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~---~~~~~------~~~~----~~~~~~~----~~~~v~~~~~ 158 (439)
+..++|+|.|+ |++|+.++..|++.|. +++++|++ .+... .... ....+.+ ..-.+..+..
T Consensus 19 L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200)
T TIGR02354 19 LEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200)
T ss_pred HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 56679999995 9999999999999998 69999887 22111 0110 0011111 1124555555
Q ss_pred ccCCHHHHHHhhcccCccEEEEc
Q 013602 159 DINDMALLKKLFDVVSFTHVMHL 181 (439)
Q Consensus 159 Dl~d~~~~~~~~~~~~~d~Vi~~ 181 (439)
+++ .+.+.++++++ |+||.+
T Consensus 98 ~i~-~~~~~~~~~~~--DlVi~a 117 (200)
T TIGR02354 98 KIT-EENIDKFFKDA--DIVCEA 117 (200)
T ss_pred eCC-HhHHHHHhcCC--CEEEEC
Confidence 664 46677888877 999977
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.046 Score=54.55 Aligned_cols=112 Identities=21% Similarity=0.167 Sum_probs=68.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCC---------------CCChhHHHHHHHhh-hcCC--eEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFND---------------YYDPSLKKARQALL-ERSG--IFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~---------------~~~~~~~~~~~~~~-~~~~--v~~~~ 157 (439)
+..++|+|.| .|++|++++..|+..|. ++++++++.- -+............ -.+. +..+.
T Consensus 133 l~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 133 LLEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred HhcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4667899998 59999999999999997 7888887621 01111111111110 1133 34444
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
..+. .+.+.++++++ |+||++.. ++. .-..+.++|.+.+. .+|+.+..+.+|
T Consensus 212 ~~~~-~~~~~~~~~~~--D~Vv~~~d---------~~~--------~r~~ln~~~~~~~i--p~i~~~~~g~~g 263 (376)
T PRK08762 212 ERVT-SDNVEALLQDV--DVVVDGAD---------NFP--------TRYLLNDACVKLGK--PLVYGAVFRFEG 263 (376)
T ss_pred ccCC-hHHHHHHHhCC--CEEEECCC---------CHH--------HHHHHHHHHHHcCC--CEEEEEeccCEE
Confidence 4443 45677778777 99998863 221 12246678888885 788877655443
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.026 Score=56.62 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=51.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH----HHHHHhhccc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM----ALLKKLFDVV 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~----~~~~~~~~~~ 173 (439)
++|+|||||++..+|..+++.|.+.|++|++++.+... ... ..... .+...+...-.|. +.+.+++++.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~----~~~-~s~~~--d~~~~~p~p~~d~~~~~~~L~~i~~~~ 75 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYP----LSR-FSRAV--DGFYTIPSPRWDPDAYIQALLSIVQRE 75 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH----HHH-HHHhh--hheEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999874321 000 00111 1222221122233 4566666776
Q ss_pred CccEEEEccc
Q 013602 174 SFTHVMHLAA 183 (439)
Q Consensus 174 ~~d~Vi~~Ag 183 (439)
++|+||-...
T Consensus 76 ~id~vIP~~e 85 (389)
T PRK06849 76 NIDLLIPTCE 85 (389)
T ss_pred CCCEEEECCh
Confidence 7899987654
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.014 Score=57.48 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=58.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhC-CCeEEEE-ECCCCCCChhHHHHHHHhhhcCCeEEE-EcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRR-GDGVLGL-DNFNDYYDPSLKKARQALLERSGIFIV-EGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~-G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~~~~~~~~~~~d 176 (439)
++|.|.||||++|..+++.|.++ +.+++.+ ++........ . .. .+.+... ..++.+. ..+++++++ |
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~-~----~~--~~~l~~~~~~~~~~~-~~~~~~~~~--D 70 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPV-S----EV--HPHLRGLVDLNLEPI-DEEEIAEDA--D 70 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCCh-H----Hh--CccccccCCceeecC-CHHHhhcCC--C
Confidence 47999999999999999999987 5788854 4321111111 0 00 1111111 1122211 123344444 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
+||.+.... ....++..+.+.|. +||=.|+..-+.
T Consensus 71 vVf~alP~~------------------~s~~~~~~~~~~G~--~VIDlS~~fR~~ 105 (346)
T TIGR01850 71 VVFLALPHG------------------VSAELAPELLAAGV--KVIDLSADFRLK 105 (346)
T ss_pred EEEECCCch------------------HHHHHHHHHHhCCC--EEEeCChhhhcC
Confidence 999877531 23456666666663 899999866543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.03 Score=50.40 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=66.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCC---------------ChhHHHH---HHHhhhcCCeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYY---------------DPSLKKA---RQALLERSGIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~---------------~~~~~~~---~~~~~~~~~v~~~~ 157 (439)
...++|+|.|+ |++|.++++.|+..|. +++++|.+.-.. ....... .++....-.++.+.
T Consensus 19 L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 19 LRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 45678999995 6699999999999996 577777543110 0000000 11111112444455
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
..+.+ ...++++++ |+||.+.. +. .....+-+.|++.+. .+|+.++.+.+|
T Consensus 98 ~~~~~--~~~~~~~~~--dvVi~~~~---------~~--------~~~~~ln~~c~~~~i--p~i~~~~~G~~G 148 (197)
T cd01492 98 DDISE--KPEEFFSQF--DVVVATEL---------SR--------AELVKINELCRKLGV--KFYATGVHGLFG 148 (197)
T ss_pred cCccc--cHHHHHhCC--CEEEECCC---------CH--------HHHHHHHHHHHHcCC--CEEEEEecCCEE
Confidence 44542 245566666 99887642 11 123446678888885 788888877666
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.026 Score=55.68 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=28.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-eEEEEEC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDN 131 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r 131 (439)
+++|+|+||||++|+++++.|.++.. +++++.+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~ 36 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAA 36 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEc
Confidence 47999999999999999999998764 8888855
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.044 Score=52.05 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=69.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.|+.|.|+|+.| +|.--++.-...|++|+++++... .+.+....-+.+.+..-..|++.++++.+.. |.
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~--------kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~--dg 249 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSK--------KKEEAIKSLGADVFVDSTEDPDIMKAIMKTT--DG 249 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCch--------hHHHHHHhcCcceeEEecCCHHHHHHHHHhh--cC
Confidence 689999999877 999888888889999999998432 1223333345555543444899999998887 77
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
++|++.... .. ....+++++|..| ++|+++-
T Consensus 250 ~~~~v~~~a----~~-----------~~~~~~~~lk~~G---t~V~vg~ 280 (360)
T KOG0023|consen 250 GIDTVSNLA----EH-----------ALEPLLGLLKVNG---TLVLVGL 280 (360)
T ss_pred cceeeeecc----cc-----------chHHHHHHhhcCC---EEEEEeC
Confidence 777664221 01 1234666677666 8998884
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.051 Score=54.12 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
+..++|.|.||.|.+|..+++.|.++|+.|++.+|
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~ 130 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQ 130 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCC
Confidence 35689999999999999999999999999999998
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.067 Score=51.89 Aligned_cols=35 Identities=40% Similarity=0.582 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..+.+|||+||+|.+|..+++.+...|.+|++.++
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~ 176 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG 176 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC
Confidence 35789999999999999999999999999999887
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.026 Score=50.98 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
+.+|+|+|+|. |.+|+++++.|.+.|++|++.++
T Consensus 26 l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~ 59 (200)
T cd01075 26 LEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADI 59 (200)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcC
Confidence 68899999996 79999999999999999998887
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.088 Score=49.99 Aligned_cols=112 Identities=14% Similarity=0.014 Sum_probs=67.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------------CChhHHHHH---HHhhhcCCeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------------YDPSLKKAR---QALLERSGIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~~~~~~---~~~~~~~~v~~~~ 157 (439)
+...+|+|.| .|++|++++..|+..|. +++++|.+.-. +........ .+....-.++.+.
T Consensus 25 L~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~ 103 (287)
T PRK08223 25 LRNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP 103 (287)
T ss_pred HhcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4567899999 59999999999999996 67777654310 011111001 1111122455555
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV 229 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v 229 (439)
..++ .+.+.++++++ |+||++. +++ ++..-..+.++|.+.+. .+|+.+..+.
T Consensus 104 ~~l~-~~n~~~ll~~~--DlVvD~~---------D~~------~~~~r~~ln~~c~~~~i--P~V~~~~~g~ 155 (287)
T PRK08223 104 EGIG-KENADAFLDGV--DVYVDGL---------DFF------EFDARRLVFAACQQRGI--PALTAAPLGM 155 (287)
T ss_pred cccC-ccCHHHHHhCC--CEEEECC---------CCC------cHHHHHHHHHHHHHcCC--CEEEEeccCC
Confidence 5555 34567778877 9998654 221 01123456778888885 7777765443
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.073 Score=52.84 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------------CChhHHHHHH--Hhh-hcCCeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------------YDPSLKKARQ--ALL-ERSGIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~~~~~~~--~~~-~~~~v~~~~ 157 (439)
....+|+|.| .|++|.+++..|+..|. ++++++.+.-. +......... ... ..-.++.+.
T Consensus 39 l~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 39 LHNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred hcCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 5667899999 59999999999999995 88888875310 0000000011 111 112355555
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
..++ .+.+.++++++ |+||.+.. ++ ..-..+-++|.+.+. .+|+.+..+-+|
T Consensus 118 ~~i~-~~~~~~~~~~~--DlVid~~D---------n~--------~~r~~in~~~~~~~i--P~v~~~~~g~~G 169 (370)
T PRK05600 118 ERLT-AENAVELLNGV--DLVLDGSD---------SF--------ATKFLVADAAEITGT--PLVWGTVLRFHG 169 (370)
T ss_pred eecC-HHHHHHHHhCC--CEEEECCC---------CH--------HHHHHHHHHHHHcCC--CEEEEEEecCEE
Confidence 5554 55677888887 99998863 22 222345677888774 677776644444
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.088 Score=48.67 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=67.0
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCC----------ChhHHHHHH--------HhhhcCCeEEEEcccC
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYY----------DPSLKKARQ--------ALLERSGIFIVEGDIN 161 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~----------~~~~~~~~~--------~~~~~~~v~~~~~Dl~ 161 (439)
+|||.| .|++|.++++.|+..|. +++++|.+.-.. .....+.+. +....-++..+..++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 489999 69999999999999996 677777644110 011111111 1111234566777776
Q ss_pred CHHHH-HHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 162 DMALL-KKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 162 d~~~~-~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
+.+.+ .++++++ |+||.+. + |...-..+-+.|.+.+. .+|..++.+.+|
T Consensus 80 ~~~~~~~~f~~~~--DvVi~a~---------D--------n~~aR~~ln~~c~~~~i--plI~~g~~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQF--HIIVNAL---------D--------NIIARRYVNGMLIFLIV--PLIESGTEGFKG 129 (234)
T ss_pred hhhhchHHHHhCC--CEEEECC---------C--------CHHHHHHHHHHHHHcCC--CEEEEcccCCce
Confidence 54433 4567776 9999865 2 22233456677777774 788877766655
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.082 Score=51.68 Aligned_cols=76 Identities=22% Similarity=0.249 Sum_probs=48.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC--HHHHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND--MALLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~~~~ 174 (439)
.+.+|||+|+ |.+|..+++.+...|.+ |++++++.+ +.+....-++..+ .|..+ .+.+.++..+..
T Consensus 163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~---------~~~~~~~~ga~~~-i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPE---------RLELAKALGADFV-INSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH---------HHHHHHHhCCCEE-EcCCcchHHHHHHHhCCCC
Confidence 4789999986 99999999999999998 998876221 1111112232221 23333 344555554445
Q ss_pred ccEEEEcccc
Q 013602 175 FTHVMHLAAQ 184 (439)
Q Consensus 175 ~d~Vi~~Ag~ 184 (439)
+|+||++.|.
T Consensus 232 ~d~vid~~g~ 241 (339)
T cd08239 232 ADVAIECSGN 241 (339)
T ss_pred CCEEEECCCC
Confidence 7999999874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.08 Score=53.08 Aligned_cols=112 Identities=17% Similarity=0.092 Sum_probs=68.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCC----------ChhHH----HHHHHhh--hcCC--eEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYY----------DPSLK----KARQALL--ERSG--IFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~----------~~~~~----~~~~~~~--~~~~--v~~~~ 157 (439)
+...+|+|.| .|++|+++++.|+..|. +++++|.+.-.. ..... ....+.+ -.+. ++.+.
T Consensus 40 L~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 118 (392)
T PRK07878 40 LKNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHE 118 (392)
T ss_pred HhcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEe
Confidence 4567899999 59999999999999996 666666543100 00000 0001111 1233 44455
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
.+++. +...++++++ |+||.+.. ++ ..-..+-++|.+.+. .+|+.+..+.+|
T Consensus 119 ~~i~~-~~~~~~~~~~--D~Vvd~~d---------~~--------~~r~~ln~~~~~~~~--p~v~~~~~g~~G 170 (392)
T PRK07878 119 FRLDP-SNAVELFSQY--DLILDGTD---------NF--------ATRYLVNDAAVLAGK--PYVWGSIYRFEG 170 (392)
T ss_pred ccCCh-hHHHHHHhcC--CEEEECCC---------CH--------HHHHHHHHHHHHcCC--CEEEEEeccCEE
Confidence 55553 4567778877 99998752 22 122346678888874 788888776666
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.093 Score=51.51 Aligned_cols=98 Identities=19% Similarity=0.118 Sum_probs=56.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC---eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD---GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
..++|.|.||||++|.++++.|.+++| ++..+......+.... ..+......++. .+ .++++
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~---------~~~~~~~v~~~~-~~----~~~~~- 70 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVT---------FEGRDYTVEELT-ED----SFDGV- 70 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeee---------ecCceeEEEeCC-HH----HHcCC-
Confidence 457899999999999999999999887 3333332111111110 012222222332 22 23555
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
|+||.+++.. ....+...+.+.|. ++|=.|+..-+.
T Consensus 71 -D~vf~a~p~~------------------~s~~~~~~~~~~g~--~VIDlS~~fR~~ 106 (344)
T PLN02383 71 -DIALFSAGGS------------------ISKKFGPIAVDKGA--VVVDNSSAFRME 106 (344)
T ss_pred -CEEEECCCcH------------------HHHHHHHHHHhCCC--EEEECCchhhcC
Confidence 9999887531 13345555555564 888888866543
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.029 Score=53.23 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=47.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
...||+|+|+|++..+|+.++..|.++|++|+++.+.. ..+.+.+++.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~~~A-- 202 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYLKDA-- 202 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHHhhC--
Confidence 37899999999999999999999999999999998611 2355666666
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||...|.
T Consensus 203 DIVIsAvg~ 211 (286)
T PRK14175 203 DVIVSAVGK 211 (286)
T ss_pred CEEEECCCC
Confidence 999998875
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.073 Score=56.53 Aligned_cols=97 Identities=18% Similarity=0.297 Sum_probs=67.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~V 178 (439)
.+|+|.| -|-+|+.+++.|.++|++|++++.+. ...+.....+..++.+|.+|++.++++ ++++ |.|
T Consensus 401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~---------~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A--~~v 468 (601)
T PRK03659 401 PQVIIVG-FGRFGQVIGRLLMANKMRITVLERDI---------SAVNLMRKYGYKVYYGDATQLELLRAAGAEKA--EAI 468 (601)
T ss_pred CCEEEec-CchHHHHHHHHHHhCCCCEEEEECCH---------HHHHHHHhCCCeEEEeeCCCHHHHHhcCCccC--CEE
Confidence 5799999 69999999999999999999999822 222223345788999999999988875 3444 777
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|-+-. +. +. ...++..+++..+..++|.-.
T Consensus 469 v~~~~---------d~----~~----n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 469 VITCN---------EP----ED----TMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred EEEeC---------CH----HH----HHHHHHHHHHHCCCCeEEEEe
Confidence 65432 11 11 234666677776654555433
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.049 Score=51.71 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
..+++++|+|+ |++|+.++..|++.|++|++.+|+
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45789999997 899999999999999999999984
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.089 Score=51.87 Aligned_cols=35 Identities=37% Similarity=0.451 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..+.+|||+||+|.+|..+++.+...|.+|++.++
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~ 191 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG 191 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC
Confidence 35789999999999999999999999999998876
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.018 Score=51.61 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=28.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
|++.|.| +|-||+.+++.|.+.||+|++..|+.+
T Consensus 2 ~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 2 MIIAIIG-TGNIGSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred cEEEEec-cChHHHHHHHHHHhCCCeEEEecCCCh
Confidence 5566655 899999999999999999999977443
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.21 Score=47.15 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=65.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCC----------ChhHHH----HHHHhhh--cCCeEEEEc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYY----------DPSLKK----ARQALLE--RSGIFIVEG- 158 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~----------~~~~~~----~~~~~~~--~~~v~~~~~- 158 (439)
+...+|+|.| .|++|+++++.|++.| -++++++.+.-.. ...... ...+... .+.+.+...
T Consensus 28 L~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 28 FADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred hcCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 5667899999 5999999999999999 5788887653110 000000 1111111 233333222
Q ss_pred ccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 159 Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
+.-+++.+.+++.. ++|+||.+... +..-..|.+.|++.+. .+|....++
T Consensus 107 ~~i~~e~~~~ll~~-~~D~VIdaiD~-----------------~~~k~~L~~~c~~~~i--p~I~~gGag 156 (268)
T PRK15116 107 DFITPDNVAEYMSA-GFSYVIDAIDS-----------------VRPKAALIAYCRRNKI--PLVTTGGAG 156 (268)
T ss_pred cccChhhHHHHhcC-CCCEEEEcCCC-----------------HHHHHHHHHHHHHcCC--CEEEECCcc
Confidence 23345666666632 35999987642 1123457888888875 676665544
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.097 Score=51.38 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=46.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
.+.+|+|+|+ |.+|...++.+...|. +|++++++. .+.+....-+...+ .|..+. ++.+..+.. .+
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~---------~~~~~a~~lGa~~v-i~~~~~-~~~~~~~~~g~~ 236 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSP---------RSLSLAREMGADKL-VNPQND-DLDHYKAEKGYF 236 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCH---------HHHHHHHHcCCcEE-ecCCcc-cHHHHhccCCCC
Confidence 4789999996 9999999999989998 688888722 12222222233222 243332 233333322 36
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||.++|.
T Consensus 237 D~vid~~G~ 245 (343)
T PRK09880 237 DVSFEVSGH 245 (343)
T ss_pred CEEEECCCC
Confidence 999999873
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.14 Score=48.78 Aligned_cols=76 Identities=22% Similarity=0.252 Sum_probs=45.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-HHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-MALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~ 175 (439)
.+.+|+|.|+ |.||..+++.+...|.+ |++++++. .+.+....-+...+ .|..+ .+.+.+......+
T Consensus 120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~---------~r~~~a~~~Ga~~~-i~~~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSP---------DRRELALSFGATAL-AEPEVLAERQGGLQNGRGV 188 (280)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH---------HHHHHHHHcCCcEe-cCchhhHHHHHHHhCCCCC
Confidence 5679999986 99999999998889987 77776521 11222222222221 12222 2333444333357
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||++.|.
T Consensus 189 d~vid~~G~ 197 (280)
T TIGR03366 189 DVALEFSGA 197 (280)
T ss_pred CEEEECCCC
Confidence 999998863
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.15 Score=46.25 Aligned_cols=70 Identities=20% Similarity=0.206 Sum_probs=50.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+++|+|.|| |-+|..-++.|++.|++|++++.... +.........++.++..+.... .++++ +
T Consensus 7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~-------~~l~~l~~~~~i~~~~~~~~~~-----dl~~~--~ 71 (205)
T TIGR01470 7 LEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE-------SELTLLAEQGGITWLARCFDAD-----ILEGA--F 71 (205)
T ss_pred cCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC-------HHHHHHHHcCCEEEEeCCCCHH-----HhCCc--E
Confidence 67899999995 99999999999999999999986221 2222333445788888887632 23444 7
Q ss_pred EEEEc
Q 013602 177 HVMHL 181 (439)
Q Consensus 177 ~Vi~~ 181 (439)
.||-+
T Consensus 72 lVi~a 76 (205)
T TIGR01470 72 LVIAA 76 (205)
T ss_pred EEEEC
Confidence 76643
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.079 Score=49.87 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=27.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhC-CCeEEEEEC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDN 131 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r 131 (439)
++|.|+|++|.+|+.+++.+.+. +.++.+++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d 34 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVD 34 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 68999999999999999998864 688888664
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.19 Score=43.76 Aligned_cols=100 Identities=14% Similarity=0.078 Sum_probs=57.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh---------hcCCeEEEEcccCCHHHHHHh
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---------ERSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---------~~~~v~~~~~Dl~d~~~~~~~ 169 (439)
+++|.+.| .|-+|+.+++.|++.|++|++.+|+.+ ..+...+.. ...+..++-.=+.|.++++++
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~-----~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v 74 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPE-----KAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAV 74 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHH-----HHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHH
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchh-----hhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhh
Confidence 47899999 699999999999999999999998332 111111100 001234555556777777777
Q ss_pred hcc--c-----CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 013602 170 FDV--V-----SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIV 222 (439)
Q Consensus 170 ~~~--~-----~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V 222 (439)
+.+ . +-+++|++... +| .-+..+.+.+.+.+. ++|
T Consensus 75 ~~~~~i~~~l~~g~iiid~sT~--------~p--------~~~~~~~~~~~~~g~--~~v 116 (163)
T PF03446_consen 75 LFGENILAGLRPGKIIIDMSTI--------SP--------ETSRELAERLAAKGV--RYV 116 (163)
T ss_dssp HHCTTHGGGS-TTEEEEE-SS----------H--------HHHHHHHHHHHHTTE--EEE
T ss_pred hhhhHHhhccccceEEEecCCc--------ch--------hhhhhhhhhhhhccc--eee
Confidence 665 1 23456655432 11 124566677776663 454
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.17 Score=49.57 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=30.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-eEEEEEC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDN 131 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r 131 (439)
+.+|||+||+|.+|..+++.+...|. +|+++++
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~ 188 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG 188 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC
Confidence 37999999999999999998888998 7999987
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.14 Score=47.69 Aligned_cols=33 Identities=39% Similarity=0.489 Sum_probs=30.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.+.+|+|+|+.+ +|..+++.+...|.+|+++++
T Consensus 134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~ 166 (271)
T cd05188 134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDR 166 (271)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcC
Confidence 567999999988 999999999999999999987
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.1 Score=50.51 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=31.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.+.+|+|.|++|.+|..+++.+...|.+|++.++
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~ 179 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTG 179 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec
Confidence 3579999999999999999999999999999987
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.039 Score=48.82 Aligned_cols=69 Identities=25% Similarity=0.262 Sum_probs=46.2
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
....+++|.|.| .|-||+++++.|..-|.+|++.+|... ... .....++. ..++++++++.
T Consensus 32 ~~l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~-------~~~--~~~~~~~~--------~~~l~ell~~a- 92 (178)
T PF02826_consen 32 RELRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPK-------PEE--GADEFGVE--------YVSLDELLAQA- 92 (178)
T ss_dssp S-STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCH-------HHH--HHHHTTEE--------ESSHHHHHHH--
T ss_pred cccCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCC-------hhh--hcccccce--------eeehhhhcchh-
Confidence 347899999999 699999999999999999999999332 111 11111222 22466777777
Q ss_pred ccEEEEccc
Q 013602 175 FTHVMHLAA 183 (439)
Q Consensus 175 ~d~Vi~~Ag 183 (439)
|+|+.+.-
T Consensus 93 -Div~~~~p 100 (178)
T PF02826_consen 93 -DIVSLHLP 100 (178)
T ss_dssp -SEEEE-SS
T ss_pred -hhhhhhhc
Confidence 98887764
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.12 Score=39.04 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=30.8
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY 136 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~ 136 (439)
+|+|.| .|++|-++|..|.+.|.+|+++.|.....
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 578888 59999999999999999999999966543
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.065 Score=53.79 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=54.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
...|+|+|+|+ |..|..+++.+.+.|++|++++.+.+..... . . -.++.+|..|.+.+.++++..++|
T Consensus 10 ~~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~-------~-a---d~~~~~~~~d~~~l~~~~~~~~id 77 (395)
T PRK09288 10 PSATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAMQ-------V-A---HRSHVIDMLDGDALRAVIEREKPD 77 (395)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchHH-------h-h---hheEECCCCCHHHHHHHHHHhCCC
Confidence 45679999995 7899999999999999999998744321110 0 0 125677889999999999977779
Q ss_pred EEEEc
Q 013602 177 HVMHL 181 (439)
Q Consensus 177 ~Vi~~ 181 (439)
.|+-.
T Consensus 78 ~vi~~ 82 (395)
T PRK09288 78 YIVPE 82 (395)
T ss_pred EEEEe
Confidence 88754
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.15 Score=49.34 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=50.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH---HHHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM---ALLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~~ 174 (439)
.+.+|||.|++|.+|..+++.+...|.+|++..+..+ ..+.....++..+ .+..+. +.+.++..+..
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~---------~~~~~~~~g~~~~-~~~~~~~~~~~i~~~~~~~~ 208 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDA---------GVAELRALGIGPV-VSTEQPGWQDKVREAAGGAP 208 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHH---------HHHHHHhcCCCEE-EcCCCchHHHHHHHHhCCCC
Confidence 5679999999999999999999999999999887221 1111111233221 122222 33445555446
Q ss_pred ccEEEEcccc
Q 013602 175 FTHVMHLAAQ 184 (439)
Q Consensus 175 ~d~Vi~~Ag~ 184 (439)
+|+|+++.|.
T Consensus 209 ~d~v~d~~g~ 218 (324)
T cd08292 209 ISVALDSVGG 218 (324)
T ss_pred CcEEEECCCC
Confidence 7999998873
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.18 Score=46.55 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=63.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------------CChhHHHHHHHhh--hcC--CeEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------------YDPSLKKARQALL--ERS--GIFIV 156 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~~~~~~~~~~--~~~--~v~~~ 156 (439)
+...+|+|.| .|++|+++++.|++.|. +++++|.+.-. +.... ....+.+ -.+ .++.+
T Consensus 9 L~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Ka-e~~~~~l~~inP~~~V~~~ 86 (231)
T cd00755 9 LRNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKV-EVMAERIRDINPECEVDAV 86 (231)
T ss_pred HhCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHH-HHHHHHHHHHCCCcEEEEe
Confidence 4567899999 59999999999999996 77777654310 00000 1111111 112 34444
Q ss_pred EcccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 157 ~~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
...++ ++.+.+++.. ++|+||.+.. +. ..-..|.+.|++.+. .+|...+.+
T Consensus 87 ~~~i~-~~~~~~l~~~-~~D~VvdaiD---------~~--------~~k~~L~~~c~~~~i--p~I~s~g~g 137 (231)
T cd00755 87 EEFLT-PDNSEDLLGG-DPDFVVDAID---------SI--------RAKVALIAYCRKRKI--PVISSMGAG 137 (231)
T ss_pred eeecC-HhHHHHHhcC-CCCEEEEcCC---------CH--------HHHHHHHHHHHHhCC--CEEEEeCCc
Confidence 44444 4455555532 3599998753 21 223457788888875 666554443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.084 Score=45.53 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=45.4
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
..+.||+++|+| =|.+|+-+|+.|...|.+|++... .+.+.......+.+... +++++...
T Consensus 19 ~~l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V~e~---------DPi~alqA~~dGf~v~~--------~~~a~~~a- 79 (162)
T PF00670_consen 19 LMLAGKRVVVIG-YGKVGKGIARALRGLGARVTVTEI---------DPIRALQAAMDGFEVMT--------LEEALRDA- 79 (162)
T ss_dssp S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-S---------SHHHHHHHHHTT-EEE---------HHHHTTT--
T ss_pred eeeCCCEEEEeC-CCcccHHHHHHHhhCCCEEEEEEC---------ChHHHHHhhhcCcEecC--------HHHHHhhC-
Confidence 347899999999 799999999999999999999987 12222222334555442 55677766
Q ss_pred ccEEEEccccc
Q 013602 175 FTHVMHLAAQA 185 (439)
Q Consensus 175 ~d~Vi~~Ag~~ 185 (439)
|++|.+.|..
T Consensus 80 -di~vtaTG~~ 89 (162)
T PF00670_consen 80 -DIFVTATGNK 89 (162)
T ss_dssp -SEEEE-SSSS
T ss_pred -CEEEECCCCc
Confidence 9999887753
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.15 Score=50.47 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=48.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH---HHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM---ALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~ 172 (439)
..+.+|||.|+ |.+|..+++.+...|.+ |++++++. .+.+....-+... ..|..+. +.+.++..+
T Consensus 175 ~~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~---------~~~~~~~~~Ga~~-~i~~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 175 KRGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDD---------RKLEWAREFGATH-TVNSSGTDPVEAIRALTGG 243 (358)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCH---------HHHHHHHHcCCce-EEcCCCcCHHHHHHHHhCC
Confidence 35789999985 99999999999999985 88887622 1222222223321 1233332 334444444
Q ss_pred cCccEEEEcccc
Q 013602 173 VSFTHVMHLAAQ 184 (439)
Q Consensus 173 ~~~d~Vi~~Ag~ 184 (439)
..+|+||++.|.
T Consensus 244 ~g~d~vid~~g~ 255 (358)
T TIGR03451 244 FGADVVIDAVGR 255 (358)
T ss_pred CCCCEEEECCCC
Confidence 457999999873
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.023 Score=54.28 Aligned_cols=36 Identities=28% Similarity=0.147 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFN 133 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 133 (439)
..+++|+|.| +|+.|++++..|++.|. +|++++|+.
T Consensus 125 ~~~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 125 ASLERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred ccCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 5678999999 59999999999999997 799999944
|
|
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.042 Score=53.38 Aligned_cols=73 Identities=30% Similarity=0.348 Sum_probs=57.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH-HHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA-LLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~-~~~~~~~~~~~d 176 (439)
++.||+.| +||+..-++..|.+++ .+|++.|| ... ..++......++.+.+|++|.+ .+++..+.. |
T Consensus 2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~-------~~~-~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~--D 70 (445)
T KOG0172|consen 2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASR-------TLK-DAEALVKGINIKAVSLDVADEELALRKEVKPL--D 70 (445)
T ss_pred CcceEEec-CccccchHHHHHhhcCCceEEEehh-------hHH-HHHHHhcCCCccceEEEccchHHHHHhhhccc--c
Confidence 57899999 7999999999999886 59999998 111 1223334466999999999998 899999988 8
Q ss_pred EEEEcc
Q 013602 177 HVMHLA 182 (439)
Q Consensus 177 ~Vi~~A 182 (439)
.|+-+-
T Consensus 71 ~viSLl 76 (445)
T KOG0172|consen 71 LVISLL 76 (445)
T ss_pred eeeeec
Confidence 877543
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.2 Score=49.22 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=47.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHhhhcCCeE-EEEcccCCHHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIF-IVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.+.+|+|+| .|.+|..+++.+...|.+ |++++++.+ +.+....-++. ++..+-.+.+.+.+...+..+
T Consensus 160 ~g~~vlV~G-~g~vG~~~~~~a~~~G~~~v~~~~~~~~---------~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 160 EGKNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDINSE---------KLALAKSLGAMQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHH---------HHHHHHHcCCceEecCcccCHHHHHHHhcCCCC
Confidence 568999997 599999999999999997 677766221 11111222222 222221224456666555456
Q ss_pred c-EEEEcccc
Q 013602 176 T-HVMHLAAQ 184 (439)
Q Consensus 176 d-~Vi~~Ag~ 184 (439)
| ++|.++|.
T Consensus 230 d~~v~d~~G~ 239 (347)
T PRK10309 230 DQLILETAGV 239 (347)
T ss_pred CeEEEECCCC
Confidence 7 88998874
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.16 Score=50.84 Aligned_cols=112 Identities=17% Similarity=0.093 Sum_probs=66.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------------CChhHHHHH---HHhhhcCCeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------------YDPSLKKAR---QALLERSGIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~~~~~~---~~~~~~~~v~~~~ 157 (439)
....+|+|.| .|++|.++++.|+..|. +++++|.+.-. +........ ++....-.++.+.
T Consensus 36 L~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~ 114 (390)
T PRK07411 36 LKAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE 114 (390)
T ss_pred HhcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence 4567899999 59999999999999996 56666544310 000000001 1111112455555
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
..++. +...++++++ |+||.+.. ++. .-..+-++|.+.+. .+|+.+..+-+|
T Consensus 115 ~~~~~-~~~~~~~~~~--D~Vvd~~d---------~~~--------~r~~ln~~~~~~~~--p~v~~~~~g~~g 166 (390)
T PRK07411 115 TRLSS-ENALDILAPY--DVVVDGTD---------NFP--------TRYLVNDACVLLNK--PNVYGSIFRFEG 166 (390)
T ss_pred cccCH-HhHHHHHhCC--CEEEECCC---------CHH--------HHHHHHHHHHHcCC--CEEEEEEccCEE
Confidence 55554 4566778877 99998863 222 12335577777774 777776655544
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.12 Score=50.12 Aligned_cols=34 Identities=38% Similarity=0.531 Sum_probs=31.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.+.+|+|+|++|.+|..+++.+.+.|.+|+++++
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~ 178 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG 178 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC
Confidence 4679999999999999999999999999999987
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.083 Score=47.05 Aligned_cols=33 Identities=36% Similarity=0.660 Sum_probs=26.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
|+|.|.| .|++|..++..|++.|++|++++.+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 6889998 89999999999999999999999833
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.13 Score=54.08 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=52.7
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
-+|+|.| .|-+|+++++.|.++|++|++++.+. .+.+.....+...+.+|.+|++.++++--+ +.|.|+
T Consensus 418 ~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~---------~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~-~a~~vi 486 (558)
T PRK10669 418 NHALLVG-YGRVGSLLGEKLLAAGIPLVVIETSR---------TRVDELRERGIRAVLGNAANEEIMQLAHLD-CARWLL 486 (558)
T ss_pred CCEEEEC-CChHHHHHHHHHHHCCCCEEEEECCH---------HHHHHHHHCCCeEEEcCCCCHHHHHhcCcc-ccCEEE
Confidence 4799999 59999999999999999999999722 122222345899999999999988765321 237665
Q ss_pred E
Q 013602 180 H 180 (439)
Q Consensus 180 ~ 180 (439)
-
T Consensus 487 v 487 (558)
T PRK10669 487 L 487 (558)
T ss_pred E
Confidence 3
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.21 Score=49.25 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=47.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+.+|+|+|+ |.+|...++.+...|.+|++++|... .+.+.+....-++.++ |..+.+ +.+......+|+
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~------~~~~~~~~~~~Ga~~v--~~~~~~-~~~~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDP------PDPKADIVEELGATYV--NSSKTP-VAEVKLVGEFDL 241 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCC------CHHHHHHHHHcCCEEe--cCCccc-hhhhhhcCCCCE
Confidence 5789999985 99999999998899999999987321 1112222223344443 333221 111111224699
Q ss_pred EEEcccc
Q 013602 178 VMHLAAQ 184 (439)
Q Consensus 178 Vi~~Ag~ 184 (439)
||.++|.
T Consensus 242 vid~~g~ 248 (355)
T cd08230 242 IIEATGV 248 (355)
T ss_pred EEECcCC
Confidence 9999873
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.32 Score=47.09 Aligned_cols=35 Identities=37% Similarity=0.416 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..+.+|+|.|++|.+|..+++.+...|.+|+++++
T Consensus 138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~ 172 (329)
T cd08250 138 KSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS 172 (329)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC
Confidence 35679999999999999999999999999999987
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.15 Score=49.06 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=48.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCe-EEEEcccCC-HHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGI-FIVEGDIND-MALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d-~~~~~~~~~~~~~ 175 (439)
.+.+|+|+|++|.+|..+++.+...|.+|+.++++.. ........++ .++..+-.+ .+.+.+......+
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~---------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSE---------KRDALLALGAAHVIVTDEEDLVAEVLRITGGKGV 214 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHH---------HHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCc
Confidence 4679999999999999999999999999999987221 1111111122 222222212 1234444444457
Q ss_pred cEEEEccc
Q 013602 176 THVMHLAA 183 (439)
Q Consensus 176 d~Vi~~Ag 183 (439)
|+++++++
T Consensus 215 d~vi~~~~ 222 (328)
T cd08268 215 DVVFDPVG 222 (328)
T ss_pred eEEEECCc
Confidence 99999876
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.18 Score=48.72 Aligned_cols=33 Identities=42% Similarity=0.478 Sum_probs=30.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
+.+|+|.|++|.+|..+++.+...|.+|+++++
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~ 179 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTG 179 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeC
Confidence 458999999999999999999999999999987
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.085 Score=47.69 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.++|+|+|.|| |-+|...++.|++.|++|+++.+
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcC
Confidence 68899999996 99999999999999999999976
|
|
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.11 Score=49.85 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=49.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~~ 174 (439)
.+.+|+|+|++|.+|..+++.+...|.+|++++++.. ..+....-++. ...|..+.+ .+.+......
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~---------~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~ 208 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEE---------KLEACRALGAD-VAINYRTEDFAEEVKEATGGRG 208 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHH---------HHHHHHHcCCC-EEEeCCchhHHHHHHHHhCCCC
Confidence 5679999999999999999999999999999887221 11111111221 123333333 2334443335
Q ss_pred ccEEEEcccc
Q 013602 175 FTHVMHLAAQ 184 (439)
Q Consensus 175 ~d~Vi~~Ag~ 184 (439)
+|++|+++|.
T Consensus 209 ~d~vi~~~g~ 218 (323)
T cd05276 209 VDVILDMVGG 218 (323)
T ss_pred eEEEEECCch
Confidence 7999999873
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.16 Score=47.35 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=67.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
|+|||.|||+ =|+.++..|.++|+ |++..-. . ...... .....+.++.+-+.|.+.+.+++++.+++.|
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g~-v~~sv~t------~--~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~v 70 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAGY-VIVSVAT------S--YGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAV 70 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcCC-EEEEEEh------h--hhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEE
Confidence 6899999865 59999999999999 5554320 1 011111 1224678888999899999999999999999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCC
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~ 217 (439)
|+..=+.. ..-+.|+.++|++.+.
T Consensus 71 IDATHPfA---------------~~is~na~~a~~~~~i 94 (249)
T PF02571_consen 71 IDATHPFA---------------AEISQNAIEACRELGI 94 (249)
T ss_pred EECCCchH---------------HHHHHHHHHHHhhcCc
Confidence 98653211 1136789999999885
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.071 Score=55.60 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=32.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
+.+|+|+|+|+ |++|++++..|+++|++|++++|+
T Consensus 377 ~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 377 LAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCC
Confidence 56789999998 899999999999999999999883
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.16 Score=54.52 Aligned_cols=106 Identities=15% Similarity=0.065 Sum_probs=68.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCC--------------CChhHHHHHH---HhhhcCCeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDY--------------YDPSLKKARQ---ALLERSGIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~--------------~~~~~~~~~~---~~~~~~~v~~~~ 157 (439)
....+|+|.|+ | +|++++..|+..|. +++++|.+.-. +..+...... +....-.|+.+.
T Consensus 105 L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 105 LGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 45679999999 7 99999999999994 77777754410 0111110111 111123566666
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
..++ .+.+.++++++ |+||.+. ++++ .=..+.++|.+.+. .+|+-++
T Consensus 183 ~~i~-~~n~~~~l~~~--DlVvD~~---------D~~~--------~R~~ln~~a~~~~i--P~i~~~~ 229 (722)
T PRK07877 183 DGLT-EDNVDAFLDGL--DVVVEEC---------DSLD--------VKVLLREAARARRI--PVLMATS 229 (722)
T ss_pred ccCC-HHHHHHHhcCC--CEEEECC---------CCHH--------HHHHHHHHHHHcCC--CEEEEcC
Confidence 6666 67899999887 9999886 3222 22345577888875 6666664
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.1 Score=52.49 Aligned_cols=73 Identities=11% Similarity=0.123 Sum_probs=50.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
..+++|+|.|+ |++|..++..|.++|. +|++..|+.++ ........ ... .+...+.+.+++.++
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~r-----a~~La~~~--~~~-----~~~~~~~l~~~l~~a-- 243 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEK-----AQKITSAF--RNA-----SAHYLSELPQLIKKA-- 243 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHH-----HHHHHHHh--cCC-----eEecHHHHHHHhccC--
Confidence 67899999995 9999999999999995 78888883211 11111111 112 222345667778877
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||++.+.
T Consensus 244 DiVI~aT~a 252 (414)
T PRK13940 244 DIIIAAVNV 252 (414)
T ss_pred CEEEECcCC
Confidence 999999875
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.14 Score=49.03 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFN 133 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 133 (439)
..+++|+|.|+ |+.+++++..|+..|. +|++++|+.
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 56789999995 8889999999999995 899999954
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.22 Score=49.97 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=47.8
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
...|++|+|.| .|.||..+++.+...|.+|++.+++.. +.......++..+. ++++++..
T Consensus 199 ~l~GktVvViG-~G~IG~~va~~ak~~Ga~ViV~d~d~~---------R~~~A~~~G~~~~~--------~~e~v~~a-- 258 (413)
T cd00401 199 MIAGKVAVVAG-YGDVGKGCAQSLRGQGARVIVTEVDPI---------CALQAAMEGYEVMT--------MEEAVKEG-- 258 (413)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECChh---------hHHHHHhcCCEEcc--------HHHHHcCC--
Confidence 36789999999 599999999999999999999887322 11111223443331 12445555
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||.+.|.
T Consensus 259 DVVI~atG~ 267 (413)
T cd00401 259 DIFVTTTGN 267 (413)
T ss_pred CEEEECCCC
Confidence 999988763
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.28 Score=47.34 Aligned_cols=76 Identities=25% Similarity=0.230 Sum_probs=49.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~~ 174 (439)
.+.+|+|+|++|.+|..+++.+...|.+|++++++.+ +.+....-++.. ..|..+.+ .+.+...+..
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~---------~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~ 211 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPA---------KTALVRALGADV-AVDYTRPDWPDQVREALGGGG 211 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHcCCCE-EEecCCccHHHHHHHHcCCCC
Confidence 4678999999999999999999999999999987221 111111122322 12333333 3444444345
Q ss_pred ccEEEEccc
Q 013602 175 FTHVMHLAA 183 (439)
Q Consensus 175 ~d~Vi~~Ag 183 (439)
+|+|+++.|
T Consensus 212 ~d~vl~~~g 220 (324)
T cd08244 212 VTVVLDGVG 220 (324)
T ss_pred ceEEEECCC
Confidence 799999876
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.25 Score=48.64 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..+.+|+|.|+ |.+|..+++.+...|.+|+++++
T Consensus 165 ~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~ 198 (349)
T TIGR03201 165 KKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDI 198 (349)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcC
Confidence 35789999999 99999999999999999999887
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.14 Score=48.29 Aligned_cols=105 Identities=20% Similarity=0.193 Sum_probs=63.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhc-CCeEEEEcccCCHHHHHHhhcc-c-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLER-SGIFIVEGDINDMALLKKLFDV-V- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~~~~~~~~-~- 173 (439)
..|.+|+|+||+|-+|+-+.+--.-+|.+|++++-.. ++-+.+.. .+.. .-.|..++ ++.+.+++ +
T Consensus 149 k~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~---------eK~~~l~~~lGfD-~~idyk~~-d~~~~L~~a~P 217 (340)
T COG2130 149 KAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGA---------EKCDFLTEELGFD-AGIDYKAE-DFAQALKEACP 217 (340)
T ss_pred CCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCH---------HHHHHHHHhcCCc-eeeecCcc-cHHHHHHHHCC
Confidence 5689999999999999988777667899999998622 12222111 1111 11233333 33333333 2
Q ss_pred -CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCC
Q 013602 174 -SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLN 233 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~ 233 (439)
.+|+.|.|.|--. ...+++.+... .||+.+.-++.|+.+
T Consensus 218 ~GIDvyfeNVGg~v------------------~DAv~~~ln~~---aRi~~CG~IS~YN~~ 257 (340)
T COG2130 218 KGIDVYFENVGGEV------------------LDAVLPLLNLF---ARIPVCGAISQYNAP 257 (340)
T ss_pred CCeEEEEEcCCchH------------------HHHHHHhhccc---cceeeeeehhhcCCC
Confidence 4699999987411 11233333333 399999999988753
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.21 Score=49.55 Aligned_cols=75 Identities=23% Similarity=0.221 Sum_probs=46.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhccc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVV 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 173 (439)
.+.+|+|+|+ |.||..+++.+...|. +|++++++. .+.+....-++.. ..|..+.+ .+.++...
T Consensus 191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~---------~r~~~a~~~Ga~~-~i~~~~~~~~~~i~~~~~~- 258 (371)
T cd08281 191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNE---------DKLALARELGATA-TVNAGDPNAVEQVRELTGG- 258 (371)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCH---------HHHHHHHHcCCce-EeCCCchhHHHHHHHHhCC-
Confidence 5679999985 9999999998888998 688887622 1222222223321 13333332 34444333
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|+||.+.|.
T Consensus 259 g~d~vid~~G~ 269 (371)
T cd08281 259 GVDYAFEMAGS 269 (371)
T ss_pred CCCEEEECCCC
Confidence 57999999863
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.071 Score=45.07 Aligned_cols=35 Identities=37% Similarity=0.566 Sum_probs=33.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.+||+|.|.|.+.-+|..++..|.++|..|+.+.+
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~ 60 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCC
Confidence 78999999999999999999999999999999975
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.12 Score=50.01 Aligned_cols=66 Identities=17% Similarity=0.287 Sum_probs=49.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+++|.|.| .|-||+.+++.|..-|.+|++.+|..... .++..+ ...+++.+++++. |
T Consensus 134 l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------------~~~~~~----~~~~~l~e~l~~a--D 192 (312)
T PRK15469 134 REDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------------PGVQSF----AGREELSAFLSQT--R 192 (312)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------------CCceee----cccccHHHHHhcC--C
Confidence 6789999999 79999999999999999999998732210 111111 1345788889888 9
Q ss_pred EEEEccc
Q 013602 177 HVMHLAA 183 (439)
Q Consensus 177 ~Vi~~Ag 183 (439)
+|+.+..
T Consensus 193 vvv~~lP 199 (312)
T PRK15469 193 VLINLLP 199 (312)
T ss_pred EEEECCC
Confidence 9887764
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.12 Score=52.41 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=32.7
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
...|++|+|.| .|.||+.+++.+...|.+|++..++
T Consensus 251 ~LaGKtVvViG-yG~IGr~vA~~aka~Ga~VIV~e~d 286 (477)
T PLN02494 251 MIAGKVAVICG-YGDVGKGCAAAMKAAGARVIVTEID 286 (477)
T ss_pred ccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36799999999 6999999999999999999999873
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.06 Score=46.57 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..||+|+|.|.+..+|+-++..|.++|+.|+.+..
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~ 68 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHS 68 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-T
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccC
Confidence 68999999999999999999999999999999865
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.13 Score=50.57 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=28.0
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC-CeEEEEEC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDN 131 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r 131 (439)
++|.|+|++|++|.++++.|.+++ .+|..++.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~ 33 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVA 33 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEE
Confidence 479999999999999999998877 58888854
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.22 Score=50.35 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=31.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
.|+|.|.| .|++|..++..|+++|++|++.+++.
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 47899998 79999999999999999999999843
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.094 Score=52.75 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=32.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
..|++|+|+|. |.||+.+++.|...|.+|++.+++
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~d 244 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVD 244 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCC
Confidence 57999999995 999999999999999999999883
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.061 Score=51.37 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=33.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..||+|.|.|.++.+|+.++..|+++|++|++..+
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~ 191 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHS 191 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECC
Confidence 68999999999999999999999999999999976
|
|
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.27 Score=48.12 Aligned_cols=98 Identities=21% Similarity=0.136 Sum_probs=59.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+.+|+|+|++|.+|..+++.+...|.+|++..+.. ....... -++. ...|..+.+....+.....+|+
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~-------~~~~~~~---~g~~-~~~~~~~~~~~~~l~~~~~vd~ 230 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCSTD-------AIPLVKS---LGAD-DVIDYNNEDFEEELTERGKFDV 230 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCcc-------hHHHHHH---hCCc-eEEECCChhHHHHHHhcCCCCE
Confidence 378999999999999999999999999999887621 1111111 1221 1223334333333333335699
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSS 227 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~ 227 (439)
+|++.|.. .....++.+...| ++|.++..
T Consensus 231 vi~~~g~~------------------~~~~~~~~l~~~G---~~v~~g~~ 259 (350)
T cd08248 231 ILDTVGGD------------------TEKWALKLLKKGG---TYVTLVSP 259 (350)
T ss_pred EEECCChH------------------HHHHHHHHhccCC---EEEEecCC
Confidence 99987631 1223445555544 89888643
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.32 Score=48.03 Aligned_cols=77 Identities=26% Similarity=0.268 Sum_probs=47.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeE-EEEcccC-CH---HHHHHhhc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIF-IVEGDIN-DM---ALLKKLFD 171 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~~~~Dl~-d~---~~~~~~~~ 171 (439)
.+.+|||+| .|.+|..+++.+...|. +|++++++. .+......-++. ++..+-. .. ..+.++..
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~---------~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~ 246 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSP---------ERLELAREFGADATIDIDELPDPQRRAIVRDITG 246 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCH---------HHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhC
Confidence 577999997 59999999999999999 899887622 111221222332 2211111 11 24555554
Q ss_pred ccCccEEEEcccc
Q 013602 172 VVSFTHVMHLAAQ 184 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~ 184 (439)
...+|+||++.|.
T Consensus 247 ~~~~d~vid~~g~ 259 (361)
T cd08231 247 GRGADVVIEASGH 259 (361)
T ss_pred CCCCcEEEECCCC
Confidence 4457999998863
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.086 Score=46.15 Aligned_cols=75 Identities=25% Similarity=0.248 Sum_probs=48.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEccc-----------------
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI----------------- 160 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl----------------- 160 (439)
...+|+|+| +|-+|...++.|...|++|+.++.+ ....+.........+..+.
T Consensus 19 ~p~~vvv~G-~G~vg~gA~~~~~~lGa~v~~~d~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 88 (168)
T PF01262_consen 19 PPAKVVVTG-AGRVGQGAAEIAKGLGAEVVVPDER---------PERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEH 88 (168)
T ss_dssp -T-EEEEES-TSHHHHHHHHHHHHTT-EEEEEESS---------HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHH
T ss_pred CCeEEEEEC-CCHHHHHHHHHHhHCCCEEEeccCC---------HHHHHhhhcccCceEEEcccccccccccchhhhhHH
Confidence 347899999 7999999999999999999999971 1122222233444444432
Q ss_pred --CCHHHHHHhhcccCccEEEEcccc
Q 013602 161 --NDMALLKKLFDVVSFTHVMHLAAQ 184 (439)
Q Consensus 161 --~d~~~~~~~~~~~~~d~Vi~~Ag~ 184 (439)
.....+.+.++.. |+||.++-.
T Consensus 89 ~~~~~~~f~~~i~~~--d~vI~~~~~ 112 (168)
T PF01262_consen 89 PESYESNFAEFIAPA--DIVIGNGLY 112 (168)
T ss_dssp CCHHHHHHHHHHHH---SEEEEHHHB
T ss_pred HHHhHHHHHHHHhhC--cEEeeeccc
Confidence 1233466666666 999987754
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.32 Score=48.30 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r 131 (439)
..+.+|||+|+ |.||..+++.+...|. +|+++++
T Consensus 184 ~~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~ 218 (368)
T TIGR02818 184 EEGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDI 218 (368)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Confidence 35789999985 9999999999989998 7988877
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.4 Score=47.83 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=48.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH-----HHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM-----ALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-----~~~~~~~ 170 (439)
..+.+|||.|+ |.||..+++.+...|. +|++++++.+ +.+....-+... ..|..+. +.+.++.
T Consensus 197 ~~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~---------r~~~a~~~Ga~~-~i~~~~~~~~~~~~v~~~~ 265 (381)
T PLN02740 197 QAGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPE---------KFEKGKEMGITD-FINPKDSDKPVHERIREMT 265 (381)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChH---------HHHHHHHcCCcE-EEecccccchHHHHHHHHh
Confidence 35789999995 9999999999999998 6888887221 222222223321 1233321 2344444
Q ss_pred cccCccEEEEcccc
Q 013602 171 DVVSFTHVMHLAAQ 184 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~ 184 (439)
.. .+|+||.++|.
T Consensus 266 ~~-g~dvvid~~G~ 278 (381)
T PLN02740 266 GG-GVDYSFECAGN 278 (381)
T ss_pred CC-CCCEEEECCCC
Confidence 43 57999999874
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.086 Score=51.62 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=47.7
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.+.||+|.|.| .|-||+.+++.|...|.+|++.+|.... . ... ..++. ..++.+++++.
T Consensus 147 ~L~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~------~-~~~---~~~~~--------~~~l~ell~~a-- 205 (333)
T PRK13243 147 DVYGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRKP------E-AEK---ELGAE--------YRPLEELLRES-- 205 (333)
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCCh------h-hHH---HcCCE--------ecCHHHHHhhC--
Confidence 37899999999 5999999999999999999999884321 0 000 11121 12466777777
Q ss_pred cEEEEccc
Q 013602 176 THVMHLAA 183 (439)
Q Consensus 176 d~Vi~~Ag 183 (439)
|+|+.+.-
T Consensus 206 DiV~l~lP 213 (333)
T PRK13243 206 DFVSLHVP 213 (333)
T ss_pred CEEEEeCC
Confidence 99887763
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.4 Score=47.81 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=48.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+.+|+|.|+ |.+|..+++.+...|.+|++++++.+ . +.+....-++..+ .|..+.+.+.+... .+|+
T Consensus 178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~------~--~~~~a~~lGa~~~-i~~~~~~~v~~~~~--~~D~ 245 (375)
T PLN02178 178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSE------K--EREAIDRLGADSF-LVTTDSQKMKEAVG--TMDF 245 (375)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChH------H--hHHHHHhCCCcEE-EcCcCHHHHHHhhC--CCcE
Confidence 5789999986 99999999999999999999886321 1 1111112233322 23334445555543 3599
Q ss_pred EEEcccc
Q 013602 178 VMHLAAQ 184 (439)
Q Consensus 178 Vi~~Ag~ 184 (439)
||++.|.
T Consensus 246 vid~~G~ 252 (375)
T PLN02178 246 IIDTVSA 252 (375)
T ss_pred EEECCCc
Confidence 9999863
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.24 Score=49.02 Aligned_cols=74 Identities=16% Similarity=0.110 Sum_probs=47.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+.+|+|.|+ |.||..+++.+...|.+|++++.+.++ . ......-++..+ .|..+.+.+.+... .+|+
T Consensus 183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~-----~---~~~~~~~Ga~~v-i~~~~~~~~~~~~~--~~D~ 250 (360)
T PLN02586 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNK-----E---DEAINRLGADSF-LVSTDPEKMKAAIG--TMDY 250 (360)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcch-----h---hhHHHhCCCcEE-EcCCCHHHHHhhcC--CCCE
Confidence 5789999775 999999999999999999888763321 1 111111233221 23334445555544 3599
Q ss_pred EEEccc
Q 013602 178 VMHLAA 183 (439)
Q Consensus 178 Vi~~Ag 183 (439)
||.+.|
T Consensus 251 vid~~g 256 (360)
T PLN02586 251 IIDTVS 256 (360)
T ss_pred EEECCC
Confidence 999887
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.38 Score=46.15 Aligned_cols=76 Identities=25% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-HHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-MALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~ 175 (439)
..+.+|+|.|++|.+|..+++.+..+|.+|++++++.+ ..+....-++..+..+-.+ .+.+.+. +..+
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~---------~~~~~~~~g~~~~~~~~~~~~~~i~~~--~~~~ 209 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPE---------RAALLKELGADEVVIDDGAIAEQLRAA--PGGF 209 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHH---------HHHHHHhcCCcEEEecCccHHHHHHHh--CCCc
Confidence 35679999999999999999999999999999887221 1222222233322212111 2334444 3357
Q ss_pred cEEEEccc
Q 013602 176 THVMHLAA 183 (439)
Q Consensus 176 d~Vi~~Ag 183 (439)
|.++++.+
T Consensus 210 d~vl~~~~ 217 (320)
T cd08243 210 DKVLELVG 217 (320)
T ss_pred eEEEECCC
Confidence 99999876
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.16 Score=50.68 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=51.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+++|+|.|| |.+|..++..+.+.|++|++++.+.+.. . ... --.++.+|..|.+.+.++++.+ |+|
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~p--a-----~~~----ad~~~~~~~~D~~~l~~~a~~~--dvi 67 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSP--A-----AQV----ADEVIVADYDDVAALRELAEQC--DVI 67 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCc--h-----hHh----CceEEecCCCCHHHHHHHHhcC--CEE
Confidence 478999996 8999999999999999999998743311 0 000 1235668999999999999877 776
Q ss_pred E
Q 013602 179 M 179 (439)
Q Consensus 179 i 179 (439)
.
T Consensus 68 t 68 (372)
T PRK06019 68 T 68 (372)
T ss_pred E
Confidence 4
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.082 Score=50.07 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=46.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..||+|+|+|.+..+|+-++..|.++|+.|+++.+.. ..+.+..++. |
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------------------------~~l~~~~~~A--D 204 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------------------------KNLRHHVRNA--D 204 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------------------------CCHHHHHhhC--C
Confidence 6799999999999999999999999999999997611 1245556666 9
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+||..+|.
T Consensus 205 Ivi~avG~ 212 (285)
T PRK10792 205 LLVVAVGK 212 (285)
T ss_pred EEEEcCCC
Confidence 99998875
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.16 Score=48.43 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=31.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 132 (439)
..+++|+|.| +|+.|+.++..|.+.|. +|+++.|+
T Consensus 123 ~~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 123 LAGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred cCCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678999999 59999999999999996 79999994
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.39 Score=45.94 Aligned_cols=78 Identities=26% Similarity=0.217 Sum_probs=49.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeE-EEEcccCC-HHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIF-IVEGDIND-MALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~~~~Dl~d-~~~~~~~~~~~~~ 175 (439)
.+.+|+|+|++|.+|..++..+...|.+|++++++.. +.+.....++. ++..+-.+ .+.+.+......+
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~---------~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~ 209 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEE---------KLALARALGADHVIDYRDPDLRERVKALTGGRGV 209 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHH---------HHHHHHHcCCceeeecCCccHHHHHHHHcCCCCc
Confidence 5679999999999999999999999999999987321 11111111221 22222111 2334444444456
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|.++++.|.
T Consensus 210 d~v~~~~g~ 218 (323)
T cd08241 210 DVVYDPVGG 218 (323)
T ss_pred EEEEECccH
Confidence 999998763
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.13 Score=48.88 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=32.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFN 133 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~ 133 (439)
..+++|+|.| .|+.+++++..|++.| .+|+++.|..
T Consensus 124 ~~~~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 124 VTGKRVLILG-AGGAARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred cCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4579999999 5999999999999999 5899999933
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.55 Score=43.05 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=70.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCC---C------------CChhHHHHHHHhh--hcCCeEEEEc-
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFND---Y------------YDPSLKKARQALL--ERSGIFIVEG- 158 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~---~------------~~~~~~~~~~~~~--~~~~v~~~~~- 158 (439)
..-+|+|.| -|++|++.+..|++-|. ++++++-+.- + +.+... ..++.. -.++.++...
T Consensus 29 ~~~~V~VvG-iGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~-vm~eri~~InP~c~V~~~~ 106 (263)
T COG1179 29 KQAHVCVVG-IGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVE-VMKERIKQINPECEVTAIN 106 (263)
T ss_pred hhCcEEEEe-cCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHH-HHHHHHHhhCCCceEeehH
Confidence 445899999 59999999999999996 6666654331 0 011111 111111 1245554444
Q ss_pred ccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 013602 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGL 232 (439)
Q Consensus 159 Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~ 232 (439)
|.-+++.+.+++.. .+|+||.+-- |+..=..|+..|++++. -++||++.-+.
T Consensus 107 ~f~t~en~~~~~~~-~~DyvIDaiD-----------------~v~~Kv~Li~~c~~~ki----~vIss~Gag~k 158 (263)
T COG1179 107 DFITEENLEDLLSK-GFDYVIDAID-----------------SVRAKVALIAYCRRNKI----PVISSMGAGGK 158 (263)
T ss_pred hhhCHhHHHHHhcC-CCCEEEEchh-----------------hhHHHHHHHHHHHHcCC----CEEeeccccCC
Confidence 45577888888877 7899998642 34445678889998875 35677666443
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.17 Score=49.14 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=31.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
-++|.|.| .|-+|..++..|+..|++|++.+++.+
T Consensus 7 i~~VaVIG-aG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIG-SGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899999 599999999999999999999998543
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.12 Score=52.53 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=48.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
..+++|+|.|+ |.+|..+++.|...|. +|++.+|+.. ......... +. +..+.+.+.+.+.++
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~-----ra~~la~~~---g~-----~~~~~~~~~~~l~~a-- 243 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLE-----RAEELAEEF---GG-----EAIPLDELPEALAEA-- 243 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHH-----HHHHHHHHc---CC-----cEeeHHHHHHHhccC--
Confidence 57789999995 9999999999999997 7899988221 111111111 11 222335566666666
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||.+.+.
T Consensus 244 DvVI~aT~s 252 (423)
T PRK00045 244 DIVISSTGA 252 (423)
T ss_pred CEEEECCCC
Confidence 999998764
|
|
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.38 Score=47.08 Aligned_cols=34 Identities=44% Similarity=0.606 Sum_probs=31.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.+.+|||.|++|.+|..+++.+...|.+|+++++
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~ 210 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAG 210 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC
Confidence 5689999999999999999999999999998876
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.12 Score=51.44 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=48.9
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.+.+|+|.|.| .|-||+.+++.|..-|.+|++.+|.... .... ...++.+ ..+++++++.+
T Consensus 189 ~L~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~------~~~~---~~~g~~~-------~~~l~ell~~a-- 249 (385)
T PRK07574 189 DLEGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLP------EEVE---QELGLTY-------HVSFDSLVSVC-- 249 (385)
T ss_pred ecCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCc------hhhH---hhcCcee-------cCCHHHHhhcC--
Confidence 37899999999 6999999999999999999999984310 0000 0112221 23477888888
Q ss_pred cEEEEccc
Q 013602 176 THVMHLAA 183 (439)
Q Consensus 176 d~Vi~~Ag 183 (439)
|+|+.+.-
T Consensus 250 DvV~l~lP 257 (385)
T PRK07574 250 DVVTIHCP 257 (385)
T ss_pred CEEEEcCC
Confidence 99887764
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.19 Score=51.78 Aligned_cols=78 Identities=23% Similarity=0.201 Sum_probs=51.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH-------------H
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM-------------A 164 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-------------~ 164 (439)
.+.+|+|+| .|-+|...+..+...|++|++++++ ..+.+...+-+..++..|..+. +
T Consensus 164 pg~kVlViG-aG~iGL~Ai~~Ak~lGA~V~a~D~~---------~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 164 PPAKVLVIG-AGVAGLAAIGAAGSLGAIVRAFDTR---------PEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcCCeEEEeccccccccccchhhhcchh
Confidence 467999999 5999999999999999999999982 2233333334566555544321 1
Q ss_pred ---HHHHhhcc-c-CccEEEEccccc
Q 013602 165 ---LLKKLFDV-V-SFTHVMHLAAQA 185 (439)
Q Consensus 165 ---~~~~~~~~-~-~~d~Vi~~Ag~~ 185 (439)
...+.+.+ . ..|+||.+++..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~p 259 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIP 259 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCC
Confidence 11222222 1 359999999863
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.11 Score=51.10 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=51.1
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.+.||+|.|.| .|-||+.+++.|...|.+|++.+|+... ............+..+........++.+++++.
T Consensus 156 ~l~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~a-- 227 (347)
T PLN02928 156 TLFGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWTS-----EPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEA-- 227 (347)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCCh-----hhhhhhccccccccccccccCcccCHHHHHhhC--
Confidence 37899999999 6999999999999999999999884211 000000000001111100111345688888888
Q ss_pred cEEEEccc
Q 013602 176 THVMHLAA 183 (439)
Q Consensus 176 d~Vi~~Ag 183 (439)
|+|+.+.-
T Consensus 228 DiVvl~lP 235 (347)
T PLN02928 228 DIVVLCCT 235 (347)
T ss_pred CEEEECCC
Confidence 99988764
|
|
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.24 Score=47.53 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=31.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.+.+|+|+|++|.+|..+++.+...|++|+++++
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~ 172 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG 172 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC
Confidence 5679999999999999999999999999999987
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.066 Score=49.06 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=31.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
|+|.|+||+|.+|..++..|++.|++|++.+|+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 5799999999999999999999999999999844
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.3 Score=47.67 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=57.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC---eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD---GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
++++|.|.||||++|..+++.|.++.| ++..+....+.+.... .....+.+- |+ +. ..++++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-------~~~~~~~v~--~~---~~--~~~~~~- 67 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-------FGGKSVTVQ--DA---AE--FDWSQA- 67 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-------ECCcceEEE--eC---ch--hhccCC-
Confidence 567999999999999999999999654 6666654222111111 001111111 22 11 122444
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
|+||.+++.. ....+...+.+.|. ++|=.|+..-+.
T Consensus 68 -Dvvf~a~p~~------------------~s~~~~~~~~~~g~--~VIDlS~~fRl~ 103 (336)
T PRK08040 68 -QLAFFVAGRE------------------ASAAYAEEATNAGC--LVIDSSGLFALE 103 (336)
T ss_pred -CEEEECCCHH------------------HHHHHHHHHHHCCC--EEEECChHhcCC
Confidence 9999877531 13456666666664 888888876544
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.31 Score=51.94 Aligned_cols=71 Identities=23% Similarity=0.246 Sum_probs=54.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~ 177 (439)
.++|+|.| -|-+|+.+++.|.++|.++++++.+. .+-+.....+..++.+|.+|++.++++ +++ .|.
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~---------~~v~~~~~~g~~v~~GDat~~~~L~~agi~~--A~~ 467 (621)
T PRK03562 400 QPRVIIAG-FGRFGQIVGRLLLSSGVKMTVLDHDP---------DHIETLRKFGMKVFYGDATRMDLLESAGAAK--AEV 467 (621)
T ss_pred cCcEEEEe-cChHHHHHHHHHHhCCCCEEEEECCH---------HHHHHHHhcCCeEEEEeCCCHHHHHhcCCCc--CCE
Confidence 36899999 59999999999999999999999722 222223345789999999999988764 233 377
Q ss_pred EEEc
Q 013602 178 VMHL 181 (439)
Q Consensus 178 Vi~~ 181 (439)
||-+
T Consensus 468 vvv~ 471 (621)
T PRK03562 468 LINA 471 (621)
T ss_pred EEEE
Confidence 7654
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.21 Score=47.64 Aligned_cols=36 Identities=33% Similarity=0.200 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFN 133 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 133 (439)
..+++|+|.|+ |+.|++++..|++.|. +|++++|+.
T Consensus 125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 45789999995 9999999999999996 789999843
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.18 Score=49.70 Aligned_cols=98 Identities=14% Similarity=-0.012 Sum_probs=55.0
Q ss_pred CEEEEECCCChHHHHHHH-HHHhCCCe---EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 100 ISVLVTGAAGFVGTHVSA-ALKRRGDG---VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~-~L~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
++|.|.||||++|..+.+ .|..+... ++.+...... .....-.+-.....++.|.+.+ +++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg---------~~~~~f~g~~~~v~~~~~~~~~----~~~-- 66 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAG---------GAAPSFGGKEGTLQDAFDIDAL----KKL-- 66 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhC---------CcccccCCCcceEEecCChhHh----cCC--
Confidence 689999999999999998 55555665 6665441110 0000011112233344444433 445
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCccc
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVY 230 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~ 230 (439)
|+||.+++.. -+..+...+.++|....+|=.||..-.
T Consensus 67 Divf~a~~~~------------------~s~~~~~~~~~aG~~~~VID~Ss~fR~ 103 (369)
T PRK06598 67 DIIITCQGGD------------------YTNEVYPKLRAAGWQGYWIDAASTLRM 103 (369)
T ss_pred CEEEECCCHH------------------HHHHHHHHHHhCCCCeEEEECChHHhC
Confidence 9999888631 134566666666631146666665543
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.35 Score=46.05 Aligned_cols=109 Identities=19% Similarity=0.248 Sum_probs=64.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCC----------ChhHHHHH----HHhh--hcC--CeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYY----------DPSLKKAR----QALL--ERS--GIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~----------~~~~~~~~----~~~~--~~~--~v~~~~ 157 (439)
+...+|||.| .|++|.++++.|+..|. +|++.|.+.-.. .....+.+ .+.+ -.+ .+..+.
T Consensus 17 L~~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~ 95 (286)
T cd01491 17 LQKSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVST 95 (286)
T ss_pred HhcCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4567899999 59999999999999996 577776543110 01111111 1111 112 333444
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGL 232 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~ 232 (439)
.++ + .+.++++ |+||.+.. +.. ....+-++|++.+. .||...+.+.+|.
T Consensus 96 ~~~-~----~~~l~~f--dvVV~~~~---------~~~--------~~~~in~~c~~~~i--pfI~a~~~G~~G~ 144 (286)
T cd01491 96 GPL-T----TDELLKF--QVVVLTDA---------SLE--------DQLKINEFCHSPGI--KFISADTRGLFGS 144 (286)
T ss_pred ccC-C----HHHHhcC--CEEEEecC---------CHH--------HHHHHHHHHHHcCC--EEEEEeccccEEE
Confidence 332 2 2345555 88887642 121 23346678888775 8999988887773
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.57 Score=50.25 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=65.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCC------C---------CChhHHHHH---HHhhhcCCeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFND------Y---------YDPSLKKAR---QALLERSGIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~------~---------~~~~~~~~~---~~~~~~~~v~~~~ 157 (439)
..+.+|+|.| .|++|++++..|+..|. +++++|.+.- + +........ .+....-+|+.+.
T Consensus 41 L~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~ 119 (679)
T PRK14851 41 LAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP 119 (679)
T ss_pred HhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 5668999999 69999999999999996 5555553321 0 011111001 1111223566777
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
..++ .+.+.++++++ |+||.+.- ++. +..-..+.+.|.+.+. .+|+.+.
T Consensus 120 ~~i~-~~n~~~~l~~~--DvVid~~D---------~~~------~~~r~~l~~~c~~~~i--P~i~~g~ 168 (679)
T PRK14851 120 AGIN-ADNMDAFLDGV--DVVLDGLD---------FFQ------FEIRRTLFNMAREKGI--PVITAGP 168 (679)
T ss_pred cCCC-hHHHHHHHhCC--CEEEECCC---------CCc------HHHHHHHHHHHHHCCC--CEEEeec
Confidence 7775 56678888887 99997652 111 0112346677888774 5666553
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.4 Score=47.80 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=46.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH-----HHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM-----ALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-----~~~~~~~ 170 (439)
..+.+|||+|+ |.||..+++.+...|.+ |++.+++. .+.+....-++..+ .|..+. +.+.++.
T Consensus 192 ~~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~---------~~~~~a~~lGa~~~-i~~~~~~~~~~~~v~~~~ 260 (378)
T PLN02827 192 SKGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINP---------EKAEKAKTFGVTDF-INPNDLSEPIQQVIKRMT 260 (378)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCH---------HHHHHHHHcCCcEE-EcccccchHHHHHHHHHh
Confidence 35789999985 99999999999899985 77776521 11222222233222 233321 2233333
Q ss_pred cccCccEEEEcccc
Q 013602 171 DVVSFTHVMHLAAQ 184 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~ 184 (439)
.. .+|+||+++|.
T Consensus 261 ~~-g~d~vid~~G~ 273 (378)
T PLN02827 261 GG-GADYSFECVGD 273 (378)
T ss_pred CC-CCCEEEECCCC
Confidence 33 57999999874
|
|
| >TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.42 Score=46.14 Aligned_cols=34 Identities=38% Similarity=0.404 Sum_probs=30.8
Q ss_pred CCC-EEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 98 NGI-SVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 98 ~~~-~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.+. +|+|.|++|.+|..+++.+..+|.+|+++.+
T Consensus 144 ~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~ 178 (323)
T TIGR02823 144 PEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTG 178 (323)
T ss_pred CCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeC
Confidence 455 9999999999999999999999999998876
|
This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc. |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.44 Score=47.27 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r 131 (439)
..+.+|||.|+ |.||..+++.+...|. +|+++++
T Consensus 185 ~~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~ 219 (368)
T cd08300 185 EPGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDI 219 (368)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeC
Confidence 35789999985 9999999999999999 6988887
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 439 | ||||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 1e-27 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-27 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-27 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-27 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 1e-26 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 2e-25 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 2e-25 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 5e-25 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 9e-23 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 1e-22 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 1e-22 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 2e-22 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-22 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-22 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 8e-22 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 8e-22 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 8e-22 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 1e-21 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 1e-21 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-21 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 4e-21 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 2e-20 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 4e-19 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 9e-19 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 1e-18 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 1e-18 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 4e-18 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 6e-18 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 9e-18 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 2e-17 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 3e-17 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 8e-17 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 2e-14 | ||
| 3enk_A | 341 | 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F | 2e-14 | ||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 3e-14 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 5e-14 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 6e-14 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-13 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 2e-13 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 5e-13 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 9e-13 | ||
| 1gy8_A | 397 | Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt | 3e-11 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 9e-11 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 3e-10 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 5e-10 | ||
| 3m2p_A | 311 | The Crystal Structure Of Udp-N-Acetylglucosamine 4- | 4e-09 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 2e-08 | ||
| 1eq2_A | 310 | The Crystal Structure Of Adp-L-Glycero-D-Mannohepto | 3e-07 | ||
| 1rkx_A | 357 | Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose | 4e-07 | ||
| 2x6t_A | 357 | Agme Bound To Adp-B-Mannose Length = 357 | 8e-07 | ||
| 3ay3_A | 267 | Crystal Structure Of Glucuronic Acid Dehydrogeanse | 2e-06 | ||
| 2z1m_A | 345 | Crystal Structure Of Gdp-D-Mannose Dehydratase From | 2e-06 | ||
| 2yy7_A | 312 | Crystal Structure Of Thermolabile L-Threonine Dehyd | 5e-06 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 2e-05 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 2e-05 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 2e-05 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 2e-05 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 2e-05 | ||
| 1bws_A | 321 | Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose E | 3e-05 | ||
| 4id9_A | 347 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 3e-05 | ||
| 1n7g_A | 381 | Crystal Structure Of The Gdp-mannose 4,6-dehydratas | 3e-05 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 5e-05 | ||
| 1wvg_A | 359 | Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal | 6e-05 | ||
| 1bsv_A | 321 | Gdp-Fucose Synthetase From Escherichia Coli Complex | 9e-05 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 9e-05 | ||
| 2gn4_A | 344 | Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehyd | 3e-04 | ||
| 1e6u_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Le | 3e-04 | ||
| 1e7s_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K1 | 4e-04 | ||
| 1e7q_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S1 | 4e-04 | ||
| 4b8w_A | 319 | Crystal Structure Of Human Gdp-L-Fucose Synthase Wi | 4e-04 | ||
| 4b8z_A | 320 | Crystal Structure Of Human Gdp-l-fucose Synthase Wi | 4e-04 | ||
| 3a1n_A | 317 | Crystal Structure Of L-Threonine Dehydrogenase From | 5e-04 | ||
| 1rpn_A | 335 | Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase | 6e-04 | ||
| 2zkl_A | 369 | Crystal Structure Of Capsular Polysaccharide Assemb | 6e-04 |
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine 4-Epimerase From Bacillus Cereus Length = 311 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6- Epimerase Length = 310 | Back alignment and structure |
|
| >pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6- Dehydratase From Yersinia Pseudotuberculosis Length = 357 | Back alignment and structure |
|
| >pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose Length = 357 | Back alignment and structure |
|
| >pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From Chromohalobacter Salexigens Length = 267 | Back alignment and structure |
|
| >pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From Aquifex Aeolicus Vf5 Length = 345 | Back alignment and structure |
|
| >pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine Dehydrogenase From Flavobacterium Frigidimaris Kuc-1 Length = 312 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In The Biosynthesis Of Gdp-L- Fucose Length = 321 | Back alignment and structure |
|
| >pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SUPERFAMILY Protein From Agrobacterium Tumefaciens (Target Efi-506441) With Bound Nad, Monoclinic Form 1 Length = 347 | Back alignment and structure |
|
| >pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase Ternary Complex With Nadph And Gdp-rhamnose. Length = 381 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359 | Back alignment and structure |
|
| >pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With Nadph Length = 321 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
| >pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase In Complex With Nadph And Udp-Glcnac Length = 344 | Back alignment and structure |
|
| >pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Length = 321 | Back alignment and structure |
|
| >pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r Length = 321 | Back alignment and structure |
|
| >pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a Length = 321 | Back alignment and structure |
|
| >pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With Bound Nadp And Gdp, Tetragonal Crystal Form Length = 319 | Back alignment and structure |
|
| >pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With Bound Nadp And Gdp, Rhombohedral Crystal Form Length = 320 | Back alignment and structure |
|
| >pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
| >pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In Complexes With Gdp And Nadph Length = 335 | Back alignment and structure |
|
| >pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling Protein Capf From Staphylococcus Aureus Length = 369 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 439 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 1e-134 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 1e-128 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-112 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 1e-106 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 1e-106 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 1e-103 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 8e-93 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 3e-92 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 1e-84 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 1e-75 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 8e-74 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 1e-71 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 2e-71 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 1e-69 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 2e-66 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 5e-58 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 3e-55 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 4e-55 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 3e-47 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 1e-46 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 1e-45 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 2e-42 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 3e-42 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 9e-42 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 6e-40 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 1e-39 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 1e-38 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 1e-38 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 2e-38 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 4e-37 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 1e-35 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 5e-34 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 8e-33 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 2e-22 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 1e-20 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 4e-20 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 2e-18 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 9e-17 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 5e-04 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 2e-15 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 2e-15 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 4e-04 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 3e-15 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 9e-04 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 5e-14 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 1e-13 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 8e-13 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 8e-12 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 1e-10 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 3e-09 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 5e-09 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 2e-08 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 9e-08 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 3e-07 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 3e-07 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 3e-07 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 5e-07 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 1e-06 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 2e-06 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 2e-06 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 3e-06 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 4e-06 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 5e-06 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 2e-05 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 3e-05 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 3e-05 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 4e-05 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 5e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-05 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 1e-04 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 1e-04 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 2e-04 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 2e-04 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 5e-04 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 6e-04 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 7e-04 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 7e-04 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 8e-04 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 388 bits (999), Expect = e-134
Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 28/342 (8%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQ--ALLERSGIFIVEGD 159
L+TG AGF+G+++ L + V+GLDNF+ + +L + + + + S +EGD
Sbjct: 28 WLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGD 87
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
I D+ +++ HV+H AA V ++ +P + +NI G +++L KNA Q
Sbjct: 88 IRDLTTCEQVMK--GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ- 144
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
+ +A+SSS YG + +P E + P S YA TK E A Y YG GLR+F
Sbjct: 145 SFTYAASSSTYGDHPALPKVE-ENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 203
Query: 280 TVYGPWGRPDMAY----FFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
V+G P+ AY +T +L + I G +RDF YID++++ + +
Sbjct: 204 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYIN---GDGETSRDFCYIDNVIQMNILSAL 260
Query: 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN----IMKLPRN 391
+ + ++N+ +++L + L + + + R+
Sbjct: 261 AKDSAKD-----------NIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRS 309
Query: 392 GDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433
GDV + A+++ A L Y+P ++ GL+ + WY+ + G
Sbjct: 310 GDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLKG 351
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 373 bits (961), Expect = e-128
Identities = 93/340 (27%), Positives = 156/340 (45%), Gaps = 28/340 (8%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQ--ALLERSGIFIVEGD 159
L+TG AGF+G+++ L + V+GLDNF + +L + R + + S ++GD
Sbjct: 30 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGD 89
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
I ++ +V+H AA V ++ +P + +NI G +++L ++A Q
Sbjct: 90 IRNLDDCNNACA--GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ- 146
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
+ +A+SSS YG + +P E D +P S YA TK E A ++ YG S GLR+F
Sbjct: 147 SFTYAASSSTYGDHPGLPKVE-DTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYF 205
Query: 280 TVYGPWGRPDMAY----FFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
V+G P+ AY +T ++ + I G +RDF YI++ V+ L A
Sbjct: 206 NVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQANLLAAT 262
Query: 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN----IMKLPRN 391
+ +V+N+ ++ L L L + + R
Sbjct: 263 AGLDARN-----------QVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFRE 311
Query: 392 GDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
GDV + A+IS A + LGY P D+ G+ + WY+ +
Sbjct: 312 GDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMFL 351
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = e-112
Identities = 70/335 (20%), Positives = 122/335 (36%), Gaps = 38/335 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V +TG G +G+H++ L RGD V+G+DNF R+ L + + VEG I
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVGIDNFATGR-------REHLKDHPNLTFVEGSIA 76
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D AL+ +L + V+H AA N +N G ++++ K N
Sbjct: 77 DHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDT---LTNCVGGSNVVQAAKKNNVGR-F 132
Query: 222 VWASSSSVYGLN-TKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
V+ ++ YG+ + P + S YA +K A E Y GL R
Sbjct: 133 VYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANE----DYLEYSGLDFVTFRLAN 188
Query: 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKS 340
V GP F + + K + RDF ++ D+ + + A+D
Sbjct: 189 VVGPRNVSGP-LPIFFQRLSEGKKCFV------TKARRDFVFVKDLARATVRAVDGVGH- 240
Query: 341 TGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP-RNGDVPFTHA 399
++ + + V + +L + + + + D P
Sbjct: 241 -------------GAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILL 287
Query: 400 NISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGG 434
+ S ++ G T L+ + V ++ Y G
Sbjct: 288 DPSRTIQDFGKIEFTPLKETVAAAVAYFREYGVSG 322
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 316 bits (813), Expect = e-106
Identities = 66/331 (19%), Positives = 127/331 (38%), Gaps = 29/331 (8%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+ GA G +GT ++ L++ + G +N ++K ++ SG F +
Sbjct: 5 ILIIGACGQIGTELTQKLRK----LYGTENVIASD---IRKLNTDVVN-SGPFE-VVNAL 55
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D ++ L +V T + +AA +NP N+ L +L + K + I
Sbjct: 56 DFNQIEHLVEVHKITDIYLMAALLSATA-EKNPAFAWDLNMNSLFHVLNLAKAKKIK-KI 113
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
W SS +V+G T + + +P+++Y +K+AGE Y++IYG+ + +R+ +
Sbjct: 114 FWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPGL 173
Query: 282 YGP-----WGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336
G D A F + + K F S + Y+DD + + +
Sbjct: 174 ISWSTPPGGGTTDYAVDIFYK-AIADKKYECFLSSET---KMPMMYMDDAIDATINIMKA 229
Query: 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPF 396
+ +NL S P I + + + + D
Sbjct: 230 PVEKIKIH---------SSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSWP 280
Query: 397 THANISLAQRELGYKPTTDLQTGLKKFVRWY 427
+ S A+ + +K T DL++ K +
Sbjct: 281 ASIDDSQAREDWDWKHTFDLESMTKDMIEHL 311
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 315 bits (810), Expect = e-106
Identities = 85/329 (25%), Positives = 137/329 (41%), Gaps = 39/329 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIF-IVEGDI 160
+L+TG AGF+G H++ AL G+ V LD+ P + + + E D+
Sbjct: 10 ILITGGAGFIGGHLARALVASGEEVTVLDDLR--VPPMIPPEGTGKFLEKPVLELEERDL 67
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+D +V HLA+ V + + P Y N+ LL +C +
Sbjct: 68 SD-------VRLV-----YHLASHKSVPRSFKQPLDY-LDNVDSGRHLLALCTSVGVPK- 113
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTG-LRFF 279
+V S+ VYG +P E D P S YAA+K E +A + G +RFF
Sbjct: 114 VVVGSTCEVYGQADTLPTPE-DSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFF 172
Query: 280 TVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339
VYGP RPD ++L R +P+ G RDFTYI D+V +A +
Sbjct: 173 NVYGPGERPDALVPRLCANLLTRNELPVE---GDGEQRRDFTYITDVVDKLVALANRPLP 229
Query: 340 STGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHA 399
V N G+ + V+D++ IL+ K PR ++ A
Sbjct: 230 --------------SVVNFGSGQSLSVNDVIRILQATSPAAEV--ARKQPRPNEITEFRA 273
Query: 400 NISLAQRELGYKP-TTDLQTGLKKFVRWY 427
+ +L R++G + ++ G++ + W+
Sbjct: 274 DTALQTRQIGERSGGIGIEEGIRLTLEWW 302
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 309 bits (794), Expect = e-103
Identities = 70/340 (20%), Positives = 127/340 (37%), Gaps = 47/340 (13%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+ VTG GF+G +V ++K G+ + L + + D
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYE------------YRVSDYT 52
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
L+ +L DV V+HLAA G + + H N +L + C N I
Sbjct: 53 LEDLINQLNDV---DAVVHLAATRGSQGKISEF----HDNEILTQNLYDACYENNISN-I 104
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V+AS+ S Y T +P++E P +Y +K A E I + Y+ GL + LRF +
Sbjct: 105 VYASTISAYSDETSLPWNE-KELPLPDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHL 163
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKST 341
YG + + F R + + + + + R+F Y D K + AL + S
Sbjct: 164 YGFNEKNNYMINRFFRQAFHGEQLTLH---ANSVAKREFLYAKDAAKSVIYALKQEKVS- 219
Query: 342 GSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANI 401
FN+G+ + ++ + + K + N + ++ +
Sbjct: 220 ------------GTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDS 267
Query: 402 SLAQRELGYKPTTDLQTGLKK----------FVRWYLSYY 431
S A+ L + + T +++ WY ++
Sbjct: 268 SKAKELLDFSTDYNFATAVEEIHLLMRGLDDVPLWYEGHH 307
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 283 bits (727), Expect = 8e-93
Identities = 86/347 (24%), Positives = 153/347 (44%), Gaps = 37/347 (10%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDG--VLGLDNFNDYYDPSLKKARQAL----LERSGIFI 155
+L+TG AGFVG++++ + V+ LD F S + L +
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEV 72
Query: 156 VEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA 215
+ DIN+ L++L + F ++ H AA + M N + +N ++LLE+ ++
Sbjct: 73 IAADINNPLDLRRLEKL-HFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNLLEIARSK 129
Query: 216 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTG 275
+ +++ASS+ VYG NTK P + + P ++Y +K +E +++ G
Sbjct: 130 KAK--VIYASSAGVYG-NTKAPNVV-GKNESPENVYGFSKLCMDEFVLSHS--NDNVQVG 183
Query: 276 LRFFTVYGPWGRPDMAY----FFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331
LR+F VYGP + K + +FE G RDF YI+D+++ +
Sbjct: 184 LRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEF---GEQLRDFVYIEDVIQANV 240
Query: 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN 391
A+ + SG V+N+G + +++VSIL+ L I K P
Sbjct: 241 KAMKAQK----SG----------VYNVGYSQARSYNEIVSILKEHLGDFKVTYI-KNPYA 285
Query: 392 GDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGGKKAA 438
T A+I +L Y P DL++G+K ++ + + G +
Sbjct: 286 FFQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPHIHAIFKGQRAKG 332
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 280 bits (718), Expect = 3e-92
Identities = 83/333 (24%), Positives = 141/333 (42%), Gaps = 34/333 (10%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
++VTG AGF+G+H+ L G V+ +DN + R+ + + D+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGR-------REFV--NPSAELHVRDLK 53
Query: 162 DMALLKKL-FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D + + DVV H AA VR + P + + N+ ++LE + +
Sbjct: 54 DYSWGAGIKGDVV-----FHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRT- 107
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+V+ASSS+VYG +P E++ P S+Y A K AGE + TY ++G+ +R+
Sbjct: 108 VVFASSSTVYGDADVIPTPEEEPYK-PISVYGAAKAAGEVMCATYARLFGVRCLAVRYAN 166
Query: 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKS 340
V GP R + Y F + N + + D GT + + Y+ D V+ LAA E+
Sbjct: 167 VVGPRLRHGVIYDFIMKLRRNPNVLEVL--GD-GTQRKSYLYVRDAVEATLAAWKKFEEM 223
Query: 341 TGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK-----RNIMKLPRNGDVP 395
N+GN V V D+ I+ +L ++ + GDV
Sbjct: 224 DAPF---------LALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVK 274
Query: 396 FTHANISLAQRELGYKPTTDLQTGLKKFVRWYL 428
+ ++ + G++PT +KK
Sbjct: 275 YMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLA 307
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 1e-84
Identities = 81/329 (24%), Positives = 135/329 (41%), Gaps = 34/329 (10%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
++VTG AGF+G+HV L + ++ +DN + + + +V+ D+
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNE-IVVIDNLSSGN-------EEFV--NEAARLVKADLA 53
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
+ L V H+AA VR +NP+ +N+ LLE + A I
Sbjct: 54 ADDIKDYLKGA---EEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSR-I 109
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V+ S+S+VYG +P E T P SLY A+K A E + +Y H + + RF V
Sbjct: 110 VFTSTSTVYGEAKVIPTPEDYPTH-PISLYGASKLACEALIESYCHTFDMQAWIYRFANV 168
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKST 341
G + Y F + N + + I + G + + YI D V L L E+
Sbjct: 169 IGRRSTHGVIYDFIMKLKRNPEELEILG--N-GEQNKSYIYISDCVDAMLFGLRGDERV- 224
Query: 342 GSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM--KLPRNGDVPFTHA 399
+FN+G+ + V + I+ L + + GDVP
Sbjct: 225 ------------NIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLL 272
Query: 400 NISLAQRELGYKPTTDLQTGLKKFVRWYL 428
+I + LG+KP + + ++ VR +
Sbjct: 273 SIEKL-KRLGWKPRYNSEEAVRMAVRDLV 300
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 1e-75
Identities = 55/343 (16%), Positives = 115/343 (33%), Gaps = 34/343 (9%)
Query: 102 VLVTGAAGFVGTHVSAAL-KRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
+LVTG++G +GT + L ++ G + + +K + D+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIK-------------FITLDV 48
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
++ + + + S + HLA + ++P N+ G ++LE K
Sbjct: 49 SNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRV-EK 106
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+V S+ V+G T +P +++ TK A E + Y +GL + LR+
Sbjct: 107 VVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPG 166
Query: 281 VYGPWGRPDMAYF----FFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336
+ P + R+ + +P+ A Y+ D +K + +
Sbjct: 167 IISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPN---RALPMMYMPDALKALVDLYEA 223
Query: 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLL-KVKAKRNIMKLPRNGDVP 395
+N+ + S+L S ++ + + + + +
Sbjct: 224 DRDKLVLR---------NGYNVTAYT-FTPSELYSKIKERIPEFEIEYKEDFRDKIAATW 273
Query: 396 FTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGGKKAA 438
+ S A E G+ DL + + K A
Sbjct: 274 PESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEKLGIEGKHA 316
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 8e-74
Identities = 69/334 (20%), Positives = 122/334 (36%), Gaps = 37/334 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
++VTG AGF+G+++ AL +G +L +DN D K + ++ + D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG-----TKFVNLVDLNIADYMDKEDF 56
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ + F V + H A + + +N LL C
Sbjct: 57 LIQIMAGEEFGDV--EAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLEREIP-- 110
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
++ASS++ YG T ++ +P ++Y +K +E + G R+F
Sbjct: 111 FLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFN 169
Query: 281 VYGPWGRPDMAY----FFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336
VYGP + F + N +S +FE RDF Y+ D+ L L+
Sbjct: 170 VYGPREGHKGSMASVAFHLNTQLNNGESPKLFEG--SENFKRDFVYVGDVADVNLWFLEN 227
Query: 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP---RNGD 393
SG +FNLG + K K + + P +
Sbjct: 228 GV----SG----------IFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRY 272
Query: 394 VPFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
FT A+++ + KP + G+ +++ W
Sbjct: 273 QAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 1e-71
Identities = 67/334 (20%), Positives = 121/334 (36%), Gaps = 37/334 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
++VTG AGF+G+++ AL +G +L +DN D K + ++ + D
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG-----TKFVNLVDLNIADYMDKEDF 103
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ + F + H A + + +N LL C
Sbjct: 104 LIQIMAGEEFG--DVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLEREIP-- 157
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
++ASS++ YG T ++ +P +++ +K +E + G R+F
Sbjct: 158 FLYASSAATYGGRTSDFIESREYE-KPLNVFGYSKFLFDEYVRQILPEANSQIVGFRYFN 216
Query: 281 VYGPWGRPDMAY----FFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336
VYGP + F + N +S +FE RDF Y+ D+ L L+
Sbjct: 217 VYGPREGHKGSMASVAFHLNTQLNNGESPKLFEG--SENFKRDFVYVGDVADVNLWFLEN 274
Query: 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP---RNGD 393
SG +FNLG + K K + + P +
Sbjct: 275 GV----SG----------IFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRY 319
Query: 394 VPFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
FT A+++ + KP + G+ +++ W
Sbjct: 320 QAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 353
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 2e-71
Identities = 76/346 (21%), Positives = 131/346 (37%), Gaps = 42/346 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
V+V G AGFVG+++ L G + V +DN + + + + E I
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAE-------KINVPDHPAVRFSETSI 87
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D ALL L D + V HLA G + ++ +P + +N + L E K+
Sbjct: 88 TDDALLASLQDEYDY--VFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKK 145
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTD-----QPASLYAATKKAGEEIAHTYNHIYGLSLTG 275
+V++++ T + TD S Y+ +K GE + Y+ + L
Sbjct: 146 VVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVR 205
Query: 276 LRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIF-------ESP----DHGTVARDFTYID 324
RF VYGP + T + R P F G RDF +++
Sbjct: 206 ARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENG-GVATRDFIFVE 264
Query: 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN 384
D+ G +A + G+ G V+N+ + ++DL + + + +
Sbjct: 265 DVANGLIACA-----ADGTPG--------GVYNIASGKETSIADLATKINEITGNNTEL- 310
Query: 385 IMKLPRNGDVPF-THANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
R D + A+RELG+ + GL+K + W +
Sbjct: 311 DRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKA 356
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 1e-69
Identities = 83/337 (24%), Positives = 137/337 (40%), Gaps = 43/337 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
VLVTG AGF+G+H+ L RG V LDN R+ + + G+ D+
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGK-------RENVPK--GVPFFRVDLR 53
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D +++ F THV H AAQA V+ ++++P N+ G ++LLE C+ +
Sbjct: 54 DKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGV-EKL 112
Query: 222 VWASSS-SVYGLN-TKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
V+AS+ ++YG E +P S YAA+K A E Y YGL LR+
Sbjct: 113 VFASTGGAIYGEVPEGERAEETWPP-RPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYG 171
Query: 280 TVYGPWGRPD-------MAYFFFTRDILNRKSIPIFESPDH--GTVARDFTYIDDIVKGC 330
VYGP P + F +L + ++ RD+ Y+ D+ +
Sbjct: 172 NVYGPRQDPHGEAGVVAI----FAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAH 227
Query: 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR 390
AL + E ++N+G +++ + + PR
Sbjct: 228 ALALFSLE---------------GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAP-PR 271
Query: 391 NGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
GD+ + + G++P Q G++ V +
Sbjct: 272 PGDLERSVLSPLKL-MAHGWRPKVGFQEGIRLTVDHF 307
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 2e-66
Identities = 72/346 (20%), Positives = 130/346 (37%), Gaps = 37/346 (10%)
Query: 90 SSARVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE 149
SS V + + +L+TG AG +G+++ +G +L +DNF + K R+ L
Sbjct: 11 SSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNF------ATGK-REVLPP 63
Query: 150 RSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLL 209
+G+ ++EG + D LL++ FD THV+H AA + +N+ G +++
Sbjct: 64 VAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKD---PDDWAEDAATNVQGSINVA 120
Query: 210 EVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY 269
+ A ++ ++ YG VP T P + Y +K AGE
Sbjct: 121 KAASKAGV-KRLLNFQTALCYGRPATVPIPIDSPT-APFTSYGISKTAGEAFLMM----S 174
Query: 270 GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329
+ + LR V GP F+ R + + RDF + D +
Sbjct: 175 DVPVVSLRLANVTGPRLAIGPIPTFYKR-LKAGQKCFC------SDTVRDFLDMSDFLAI 227
Query: 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNI-MKL 388
+L + VFN+ + ++ ++ + + +
Sbjct: 228 ADLSLQEGRPT-------------GVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVA 274
Query: 389 PRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGG 434
P DVP + S + E G+K D + + + WY Y
Sbjct: 275 PGADDVPSVVLDPSKTETEFGWKAKVDFKDTITGQLAWYDKYGVTD 320
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 5e-58
Identities = 62/332 (18%), Positives = 109/332 (32%), Gaps = 75/332 (22%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
+++TGA GFVG ++ A L D + + +
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEE----------------------- 39
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
L L ++HLA ++ + N++ L +L++ +PA
Sbjct: 40 ----LESALLKA---DFIVHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPA 88
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
I+ SSS + Y +K GE++ Y YG ++ R+
Sbjct: 89 ILL-SSSIQAT---------------QDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPN 132
Query: 281 VYGPWGRPDMAYFF--FTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338
++G W +P+ F I + I + V Y+DDIV A++
Sbjct: 133 LFGKWCKPNYNSVIATFCYKIARNEEIQVN----DRNVELTLNYVDDIVAEIKRAIEGTP 188
Query: 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTH 398
V + N V + ++V +L + + + R + KL
Sbjct: 189 TIEN-----------GVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLD-------NL 230
Query: 399 ANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430
L L Y P+TD L V S+
Sbjct: 231 FEKDLYSTYLSYLPSTDFSYPLLMNVDDRGSF 262
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 3e-55
Identities = 71/392 (18%), Positives = 128/392 (32%), Gaps = 67/392 (17%)
Query: 90 SSARVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF------------NDYYD 137
+ +G V+V G G+ G + L ++ V +DN +
Sbjct: 2 RGSHHHHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPI 61
Query: 138 PSLKKARQALLERSG--IFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPN 195
S+ +G I + GDI D L + F V+H Q Y+M + +
Sbjct: 62 ASIHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRS 121
Query: 196 S---YVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG------LNTKVPFSEKDRTD- 245
H+N+ G +++L K + +V + YG + + RTD
Sbjct: 122 RAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDT 181
Query: 246 -----QPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDI- 299
Q +S Y +K +G+ T L VYG + +
Sbjct: 182 LPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLD 241
Query: 300 --------LNR--------KSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGS 343
LNR + ++ G R + I D V+ ++ A +
Sbjct: 242 YDAVFGTALNRFCVQAAVGHPLTVYGK---GGQTRGYLDIRDTVQ----CVEIAIANPAK 294
Query: 344 GGKKRGRAQLRVFNLGN--TSPVPVSDLVSILERLLK---VKAKRNIMKLPRNGDVPFTH 398
G+ RVFN S V++L S++ + + K+ + PR +
Sbjct: 295 AGE------FRVFNQFTEQFS---VNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYY 345
Query: 399 ANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430
ELG +P + L + + + +
Sbjct: 346 NAKHTKLMELGLEPHYLSDSLLDSLLNFAVQF 377
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 4e-55
Identities = 63/349 (18%), Positives = 115/349 (32%), Gaps = 50/349 (14%)
Query: 102 VLVTGAAGFVGTHVSAALKRRG-------DGVLGLDNFNDYYDPSLKKARQALLERSGIF 154
+ + GAAG VG ++ L + G + +D F P +
Sbjct: 17 IAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVF----QPEAPAG-----FSGAVD 67
Query: 155 IVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKN 214
D++ +KL + + HLAA A + + N+ G L + +
Sbjct: 68 ARAADLSAPGEAEKLVEA-RPDVIFHLAAIVSGE-AELDFDKGYRINLDGTRYLFDAIRI 125
Query: 215 AN----PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYG 270
AN +P +V+ SS +V+G P ++ T P + Y K E + Y+
Sbjct: 126 ANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHT-TPLTSYGTQKAICELLLSDYSRRGF 184
Query: 271 LSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPI----FESPDHGTVARDFTYIDDI 326
G+R T+ G+P+ A F +IL P+ P ++
Sbjct: 185 FDGIGIRLPTICIRPGKPNAAASGFFSNILRE---PLVGQEAVLPVPESIRHWHASPRSA 241
Query: 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM 386
V + + G R ++ S V + + L ++ KA I
Sbjct: 242 VGFLIHGAMIDVEKVGPR---------RNLSMPGLS-ATVGEQIEALRKVAGEKAVALIR 291
Query: 387 KLPRNGDVPFTHAN-------ISLAQRELGYKPTTDLQTGLKKFVRWYL 428
++ A RELG+ + + ++ + L
Sbjct: 292 --REPNEMIMRMCEGWAPGFEAKRA-RELGFTAESSFEEIIQVHIEDEL 337
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 3e-47
Identities = 68/338 (20%), Positives = 132/338 (39%), Gaps = 43/338 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+ +TGA GF+ +H++ LK G V+ D + + + F + D+
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE--------FHL-VDLR 82
Query: 162 DMALLKKLFDVVSFTHVMHLAAQA-GVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
M K+ + HV +LAA G+ + N + +++N +++E + +
Sbjct: 83 VMENCLKVTE--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-R 139
Query: 221 IVWASSSSVYGLNTKVPFSEKDR------TDQPASLYAATKKAGEEIAHTYNHIYGLSLT 274
+ASS+ +Y ++ + +P + K A EE+ YN +G+
Sbjct: 140 FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECR 199
Query: 275 GLRFFTVYGPWGRPDMAYFF----FTRDILNRK-SIPIFESPDHGTVARDFTYIDDIVKG 329
RF +YGP+G F R ++ G R FT+ID+ V+G
Sbjct: 200 IGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGD---GLQTRSFTFIDECVEG 256
Query: 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP 389
L S N+G+ V ++++ ++ + K + + P
Sbjct: 257 VLRLTK----SDFRE----------PVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP 302
Query: 390 RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
V +++ +L + +LG+ P L+ GL+ W
Sbjct: 303 --EGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWI 338
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-46
Identities = 51/236 (21%), Positives = 87/236 (36%), Gaps = 35/236 (14%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTGAAG VG+ + L V D + + ++ IV D+
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEE------------IVACDLA 52
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP-NSYVHSNIAGLVSLLEVCKNANPQPA 220
D + L ++HL + ++ P N + +NI G +L E +N P
Sbjct: 53 DAQAVHDLVK--DCDGIIHLGGVS-----VERPWNDILQANIIGAYNLYEAARNLGK-PR 104
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
IV+ASS+ G + + + +P SLY +K GE++A Y H + + +R +
Sbjct: 105 IVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGS 164
Query: 281 VYGPWGRPDMAY-----FFFTRDILNRKSIPIFESPDHGTV------ARDFTYIDD 325
+ M F R L +++ V + D
Sbjct: 165 CFPKPKDARMMATWLSVDDFMR--LMKRAFVA-PKLGCTVVYGASANTESWWDNDK 217
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 1e-45
Identities = 77/353 (21%), Positives = 144/353 (40%), Gaps = 45/353 (12%)
Query: 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIV 156
++ +L+TG AGFVG+H++ L G V +DNF K+ + + ++
Sbjct: 25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF----FTGRKRNVEHWIGHENFELI 80
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
D+ + ++ D + HLA+ A M NP + +N G +++L + K
Sbjct: 81 NHDVVEPLYIE--VDQ-----IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG 133
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDR----TDQPASLYAATKKAGEEIAHTYNHIYGLS 272
+ ++ AS+S VYG P SE P + Y K+ E + + Y G+
Sbjct: 134 AR--LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVE 191
Query: 273 LTGLRFFTVYGPWGRPDMAYFF--FTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330
+ R F +GP + F L + + ++ S G+ R F Y+ D+V G
Sbjct: 192 VRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGS---GSQTRAFQYVSDLVNGL 248
Query: 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR 390
+A +++ S NLGN + + +++ L+ ++ + +
Sbjct: 249 VALMNSNVSS--------------PVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ 294
Query: 391 NGD----VPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGGKKAAG 439
+ D P +I A+ LG++P L+ GL K + ++ G
Sbjct: 295 D-DPQKRKP----DIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQG 342
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 2e-42
Identities = 85/341 (24%), Positives = 147/341 (43%), Gaps = 54/341 (15%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
S+L+ G AG++G+H L G V+ +DN L+ + + F GD+
Sbjct: 3 SILICGGAGYIGSHAVKKLVDEGLSVVVVDN--------LQTGHEDAITEGAKF-YNGDL 53
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D A L+ +F + VMH AA + V +M+ P Y ++N+ G + LLEV
Sbjct: 54 RDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK-VDK 112
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+++S+++ YG +E+ T P + Y TK A E++ H Y+ L R+F
Sbjct: 113 FIFSSTAATYGEVDVDLITEETMT-NPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFN 171
Query: 281 VYG--PWGR----PD-----MAYFFFTRDILN-----RKSIPIF----ESPDHGTVARDF 320
V G P G + +L R+ I +F +PD GT RD+
Sbjct: 172 VAGATPNGIIGEDHRPETHLIPL------VLQVALGQREKIMMFGDDYNTPD-GTCIRDY 224
Query: 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERL--LK 378
+++D+V L + S +NLGN + V ++V + + +
Sbjct: 225 IHVEDLVAAHFLGLKDLQNGGES----------DFYNLGNGNGFSVKEIVDAVREVTNHE 274
Query: 379 VKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPT-TDLQT 418
+ A+ + R GD A+ A+ +LG+ P +++T
Sbjct: 275 IPAE---VAPRRAGDPARLVASSQKAKEKLGWDPRYVNVKT 312
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 3e-42
Identities = 73/370 (19%), Positives = 126/370 (34%), Gaps = 60/370 (16%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ G GF+G H++ L R V GLD A L VEGDI
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIG--------SDAISRFLNHPHFHFVEGDI 54
Query: 161 -NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
++ V+ L A A +NP + + ++ C +
Sbjct: 55 SIHSEWIEYHVKKCDV--VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR- 111
Query: 220 AIVWASSSSVYGLNTKVPFSEKDR------TDQPASLYAATKKAGEEIAHTYNHIYGLSL 273
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL
Sbjct: 112 -IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 170
Query: 274 TGLRFFTVYGPWGRPDMAYFF----------FTRDILNRKSIPIFESPDHGTVARDFTYI 323
T R F GP R D +++ I + D G R FT I
Sbjct: 171 TLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTDI 225
Query: 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP-VPVSDLVSILERLLKVKAK 382
D ++ ++ A + N+GN + +L +L +
Sbjct: 226 RDGIEALYRIIENAGNRCDGE----------IINIGNPENEASIEELGEMLLASFEKHPL 275
Query: 383 RNIMKLPRNGDVPFTHA--------------NISLAQRELGYKPTTDLQTGLKKFVRWYL 428
R+ V + + +I A R L ++P D+Q + + + ++L
Sbjct: 276 RHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFL 335
Query: 429 SYYAGGKKAA 438
K +
Sbjct: 336 RTVDLTDKPS 345
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 151 bits (382), Expect = 9e-42
Identities = 70/380 (18%), Positives = 129/380 (33%), Gaps = 59/380 (15%)
Query: 89 RSSARVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL 148
+ + VL+ G GF+G H+S + D + + L+
Sbjct: 14 AQTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDM-------QTDRLGDLV 66
Query: 149 ERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSL 208
+ + EGDI + V ++ L A A ++ P + + +
Sbjct: 67 KHERMHFFEGDITINKEWVEYH-VKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPI 125
Query: 209 LEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKD------RTDQPASLYAATKKAGEEIA 262
+ +V+ S+S VYG+ F ++P +YA +K+ + +
Sbjct: 126 VRSAVKYGKH--LVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVI 183
Query: 263 HTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFF----------FTRDILNRKSIPIFESPD 312
Y + GL+ T R F GP D Y F I+ ++I + D
Sbjct: 184 WGY-GMEGLNFTLFRPFNWIGP--GLDSIYTPKEGSSRVVTQFLGHIVRGENISLV---D 237
Query: 313 HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN-TSPVPVSDLVS 371
G+ R FTY+DD + + ++ + G A +++N+GN + V +L +
Sbjct: 238 GGSQKRAFTYVDDGISALMKIIENSN----------GVATGKIYNIGNPNNNFSVRELAN 287
Query: 372 ILERLLKVKAKRNIMKLPRNGDVPFTHA---------------NISLAQRELGYKPTTDL 416
+ L + R V T I +ELG+ P
Sbjct: 288 KMLELAAEFPEYADSA-KRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTF 346
Query: 417 QTGLKKFVRWYLSYYAGGKK 436
L++ Y + A +
Sbjct: 347 DDALRQIFEAYRGHVADARA 366
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 6e-40
Identities = 49/230 (21%), Positives = 80/230 (34%), Gaps = 25/230 (10%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTGAAG +G + L + + D V+ D+
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGP------------NEECVQCDLA 53
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D + + ++HL + + + NI GL +L E + QP I
Sbjct: 54 DANAVNAMVA--GCDGIVHLGGISVEK----PFEQILQGNIIGLYNLYEAARAHG-QPRI 106
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V+ASS+ G + D +P LY +K GE +A Y +G +R +
Sbjct: 107 VFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSC 166
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPD------HGTVARDFTYIDD 325
M +F+ D +F +P G A D + D+
Sbjct: 167 TPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCPVVWGASANDAGWWDN 216
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 1e-39
Identities = 94/348 (27%), Positives = 151/348 (43%), Gaps = 43/348 (12%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VLVTG +G++G+H L + G V+ LDN + L + L + F+ EGDI
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFV-EGDI 59
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ AL+ ++ + V+H A V ++Q P Y +N+ G + L+ + AN +
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-N 118
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAH-TYNHIYGLSLTGLRFF 279
+++SS++VYG N K+P+ E T P S Y +K E+I S+ LR+F
Sbjct: 119 FIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 280 TVYG----------PWGRPD--MAYFFFTRDIL-----NRKSIPIF----ESPDHGTVAR 318
G P G P+ M Y I R S+ IF + D GT R
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPY------IAQVAVGRRDSLAIFGNDYPTED-GTGVR 231
Query: 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLK 378
D+ ++ D+ G + A++ G + ++NLG V D+V+ +
Sbjct: 232 DYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACG 281
Query: 379 VKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+ R GD+P A+ S A REL ++ T L + W
Sbjct: 282 KPVNYHFAP-RREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 1e-38
Identities = 90/349 (25%), Positives = 150/349 (42%), Gaps = 46/349 (13%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF-NDYYDPSLKKARQALLERSGIFIVEGD 159
++LVTG AG++G+H + L G V+ DN N + ++ + + + ++ F E D
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKRE-AIARIEK-ITGKTPAFH-ETD 63
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
++D L ++FD T +H AA V ++ P Y +N+ L+SLL V + +
Sbjct: 64 VSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK- 122
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAH-TYNHIYGLSLTGLRF 278
IV++SS++VYG+ + P E + Y TK E+I + LR+
Sbjct: 123 RIVFSSSATVYGVPERSPIDETFPL-SATNPYGQTKLMAEQILRDVEAADPSWRVATLRY 181
Query: 279 FTVYG----------PWGRPD--MAYFFFTRDIL-----NRKSIPIF----ESPDHGTVA 317
F G P G P+ M Y + + + +F +PD GT
Sbjct: 182 FNPVGAHESGLIGEDPAGIPNNLMPY------VAQVAVGKLEKLRVFGSDYPTPD-GTGV 234
Query: 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLL 377
RD+ ++ D+ +G +AALD E+ NLG V ++V E+
Sbjct: 235 RDYIHVVDLARGHIAALDALERRDA----------SLTVNLGTGRGYSVLEVVRAFEKAS 284
Query: 378 KVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
++ R GDV +AN + A +G+K DL+ RW
Sbjct: 285 GRAVPYELVA-RRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRW 332
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 1e-38
Identities = 101/355 (28%), Positives = 156/355 (43%), Gaps = 53/355 (14%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNF--NDYYDPSLKKARQALLER----SGIFI 155
VLVTG AG++G+H L G + +DNF SL ++ L R +G +
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPES----LRRVQELTGRSV 60
Query: 156 --VEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCK 213
E DI D L++LF SF V+H A V ++Q P Y N+ G + LLE+ K
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 214 NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAH-TYNHIYGLS 272
+ +V++SS++VYG +P E T + Y +K EE+ +
Sbjct: 121 AHGVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN 179
Query: 273 LTGLRFFTVYG----------PWGRPD--MAYFFFTRDIL-----NRKSIPIF----ESP 311
LR+F G P G P+ M Y + R+++ +F ++
Sbjct: 180 AVLLRYFNPTGAHASGCIGEDPQGIPNNLMPY------VSQVAIGRREALNVFGNDYDTE 233
Query: 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVS 371
D GT RD+ ++ D+ KG +AAL ++ G R++NLG + V +V
Sbjct: 234 D-GTGVRDYIHVVDLAKGHIAALRKLKEQCG----------CRIYNLGTGTGYSVLQMVQ 282
Query: 372 ILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+E+ K ++ R GDV +AN SLAQ ELG+ L + RW
Sbjct: 283 AMEKASGKKIPYKVVA-RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-38
Identities = 57/355 (16%), Positives = 102/355 (28%), Gaps = 65/355 (18%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V GA G +G H + A++ G ++ + ++ L ++
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLVLIH---------RPSSQIQRLAYLEPECRVAEML 66
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D A L++ + V+ A + V S + C A I
Sbjct: 67 DHAGLERALRGL--DGVIFSAGY--YPSRPRRWQEEVASALGQTNPFYAACLQARVPR-I 121
Query: 222 VWASSSSVYGLNTK-VPFSEK---DRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 277
++ S+ + + +P E D S Y K A +E A GL +
Sbjct: 122 LYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQAR-NGLPVVIGI 180
Query: 278 FFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337
V G I N + + + + + +G L AL+
Sbjct: 181 PGMVLGELDIGPTTGRVI-TAIGNGE-MTHY--VAGQR---NVIDAAEAGRGLLMALE-- 231
Query: 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNI------------ 385
RGR + L + ++DL + LL A + +
Sbjct: 232 ----------RGRIG-ERYLLTGH-NLEMADLTRRIAELLGQPAPQPMSMAMARALATLG 279
Query: 386 --MKLPRNGDVPFT-----------HANISLAQRELGYKPTTDLQTGLKKFVRWY 427
+ A+ ELG+ TT L L + + W+
Sbjct: 280 RLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWF 334
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 4e-37
Identities = 78/373 (20%), Positives = 135/373 (36%), Gaps = 65/373 (17%)
Query: 101 SVLVTGAAGFVGTHVSAAL-KRRGDGVLGLDNF-NDYYDPSLKKARQALLERSGIFI--- 155
VLV G AG++G+H AL + V+ +D+ + + R+ + +
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 156 ----------VEGDINDMALLKKLF-DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAG 204
GD+ + L +F V+H+ A V ++++P Y +N+ G
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 205 LVSLLEVCKNANPQPAIVWASSSSVYG-------LNTKVPFSEKDRTDQPASLYAATKKA 257
++ LL+ I+++SS++++G P + P S Y +K
Sbjct: 124 ILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNAEPIDINAKK-SPESPYGESKLI 181
Query: 258 GEEIAHTYNHIYGLSLTGLRFFTVYG--PWGR----PD----------MAY--------- 292
E + YG+ LR+F G G
Sbjct: 182 AERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQR 241
Query: 293 FFFTRDILNRKSIPIF----ESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKR 348
D K +PIF +PD GT RD+ ++ D+ + ALD EK G
Sbjct: 242 LTIHEDASTDKRMPIFGTDYPTPD-GTCVRDYVHVCDLASAHILALDYVEK----LGPND 296
Query: 349 GRAQLRVFNLGNTSPVPVSDLVSILERL--LKVKAKRNIMKLPRNGDVPFTHANISLAQR 406
VFNLG + V +++ + + + + R GD + A A+
Sbjct: 297 KSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVR---ECGRREGDPAYLVAASDKARE 353
Query: 407 ELGYKPT-TDLQT 418
LG+KP L+
Sbjct: 354 VLGWKPKYDTLEA 366
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-35
Identities = 76/366 (20%), Positives = 133/366 (36%), Gaps = 69/366 (18%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNF----NDYYDPSLKKARQALLERSGIFIVE 157
+L+TG GF+G+++++ +G ++ DN +L L V
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATD---NLH----WLSSLGNFEFVH 56
Query: 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217
GDI + + +L HLA Q + ++ NP N+ G ++LLE + N
Sbjct: 57 GDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNS 116
Query: 218 QPAIVWASSSSVYG----------------LNTKVPFSEKDRTDQPASLYAATKKAGEEI 261
I+++S++ VYG ++ + E + D S Y +K A ++
Sbjct: 117 NCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD-FHSPYGCSKGAADQY 175
Query: 262 AHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRD-------ILN--------RKSIP 306
Y I+GL+ R ++YG F T D K
Sbjct: 176 MLDYARIFGLNTVVFRHSSMYGG-------RQFATYDQGWVGWFCQKAVEIKNGINKPFT 228
Query: 307 IFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLG--NTSPV 364
I + G RD + +D++ AL K G FN+G + +
Sbjct: 229 ISGN---GKQVRDVLHAEDMISLYFTALANVSKIRG-----------NAFNIGGTIVNSL 274
Query: 365 PVSDLVSILERLLKVKAKRNIMKLP-RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKF 423
+ +L +LE + + LP R D A+I + + P + G++K
Sbjct: 275 SLLELFKLLEDYCNIDMR--FTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKM 332
Query: 424 VRWYLS 429
W S
Sbjct: 333 YDWTSS 338
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 5e-34
Identities = 77/348 (22%), Positives = 132/348 (37%), Gaps = 32/348 (9%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V VTG GF G +S L+ G V G PSL + + G+ GDI
Sbjct: 12 VFVTGHTGFKGGWLSLWLQTMGATVKGYSL-TAPTVPSLFETARV---ADGMQSEIGDIR 67
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D L + V H+AAQ VR + P +N+ G V LLE ++ A+
Sbjct: 68 DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAV 127
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---------GLS 272
V +S Y + ++ Y+ +K E + +Y + + G +
Sbjct: 128 VNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTA 187
Query: 273 LTGLRFFTVYGPWGRPDMAYFFFTRDIL---NRKSIPIFESPDHGTVARDFTYIDDIVKG 329
+ +R V G D A DIL + I +P R + ++ + + G
Sbjct: 188 VATVRAGNVIGG---GDWALDRIVPDILRAFEQSQPVIIRNPHA---IRPWQHVLEPLSG 241
Query: 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLG--NTSPVPVSDLVSILERLLKVKAKRNIMK 387
L A+K + G + +N G + PV ++V + + A +
Sbjct: 242 YLL---LAQKLY-TDGAEYAEG----WNFGPNDADATPVKNIVEQMVKYWGEGASWQLDG 293
Query: 388 LPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGGK 435
+ + + S A+ +LG+ P +L T L+ V W+ ++ +G
Sbjct: 294 NAHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGTD 341
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 8e-33
Identities = 96/363 (26%), Positives = 148/363 (40%), Gaps = 43/363 (11%)
Query: 90 SSARVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE 149
++ VLVTG AG++G+H L G + DN ++ S+ + L +
Sbjct: 2 TAQLQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEV-LTK 60
Query: 150 RSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLL 209
F E D+ D L+K+F V+H A V + Q P Y H+NI G V LL
Sbjct: 61 HHIPFY-EVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLL 119
Query: 210 EVCKNANPQPAIVWASSSSVYGLNT----KVPFSEKDRTDQPASLYAATKKAGEEIAHTY 265
E+ + N V++SS++VYG T +P E+ P + Y TK A E I +
Sbjct: 120 ELMQQYNV-SKFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYGHTKYAIENILNDL 177
Query: 266 NH--IYGLSLTGLRFFTVYG----------PWGRPD--MAYFFFT----RDILNRKSIPI 307
+ LR+F G P G P+ + Y R+ L I
Sbjct: 178 YNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLY-----I 232
Query: 308 F----ESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363
F +S D GT RD+ ++ D+ KG +AAL E + G R +NLG+
Sbjct: 233 FGDDYDSRD-GTPIRDYIHVVDLAKGHIAALQYLEAYNENEGL------CREWNLGSGKG 285
Query: 364 VPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKF 423
V ++ + + + R GDV A A+REL ++ ++ K
Sbjct: 286 STVFEVYHAFCKASGIDLPYKVTG-RRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDL 344
Query: 424 VRW 426
+W
Sbjct: 345 WKW 347
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 2e-22
Identities = 82/390 (21%), Positives = 136/390 (34%), Gaps = 66/390 (16%)
Query: 85 EKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKA 143
R+ S AR VL+ G GF+G H++ L R V GLD +D A
Sbjct: 301 GSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------A 352
Query: 144 RQALLERSGIFIVEGDIND----MALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVH 199
L VEGDI+ + K DVV + L A A +NP
Sbjct: 353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVV-----LPLVAIATPIEYTRNPLRVFE 407
Query: 200 SNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT------DQPASLYAA 253
+ + ++ C + I++ S+S VYG+ + F E ++P +Y+
Sbjct: 408 LDFEENLRIIRYCVKYRKR--IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSV 465
Query: 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFF----------FTRDILNRK 303
+K+ + + Y GL T R F GP R D +++
Sbjct: 466 SKQLLDRVIWAYGEKEGLQFTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGS 523
Query: 304 SIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN-TS 362
I + D G R FT I D ++ ++ R + N+GN +
Sbjct: 524 PIKLI---DGGKQKRCFTDIRDGIEALYRIIE----------NAGNRCDGEIINIGNPEN 570
Query: 363 PVPVSDLVSILERLLKVKAKRNIMKLPRNG--------------DVPFTHANISLAQREL 408
+ +L +L + R+ DV +I A R L
Sbjct: 571 EASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCL 630
Query: 409 GYKPTTDLQTGLKKFVRWYLSYYAGGKKAA 438
++P D+Q + + + ++L K +
Sbjct: 631 DWEPKIDMQETIDETLDFFLRTVDLTDKPS 660
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-20
Identities = 52/281 (18%), Positives = 91/281 (32%), Gaps = 50/281 (17%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
+L+ G G +G ++ L +G V GL R A +G+ + D+
Sbjct: 5 KILIAGC-GDLGLELARRLTAQGHEVTGL-------------RRSAQPMPAGVQTLIADV 50
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
L + + ++ A + Y S + GL + L + A Q
Sbjct: 51 TRPDTLASIVHLR--PEILVYCVAASEY----SDEHYRLSYVEGLRNTLSALEGAPLQ-H 103
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+ + SS+ VYG + E D E + S T LRF
Sbjct: 104 VFFVSSTGVYGQEVEEWLDE-DTPPIAKDFSGKRMLEAEALLA------AYSSTILRFSG 156
Query: 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKS 340
+YGP GR M T + + + T + + DD +
Sbjct: 157 IYGP-GRLRMIRQAQTPEQWP--------ARNAWT---NRIHRDDGAAFIAYLIQ----- 199
Query: 341 TGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ R++ + + P+PV DL+ L +
Sbjct: 200 -----QRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAY 235
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 4e-20
Identities = 86/358 (24%), Positives = 140/358 (39%), Gaps = 79/358 (22%)
Query: 102 VLVTGAAGFVGTHV------SAALKRRGDGVLGLD------NFNDYYDPSLKKARQALLE 149
+LVTG AGF+G+H A D V+ LD N +L +
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRA-----NLA----PVDA 53
Query: 150 RSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLL 209
+ V GDI D LL + ++H AA++ V ++ + + +N+ G +LL
Sbjct: 54 DPRLRFVHGDIRDAGLLARELR--GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLL 111
Query: 210 EVCKNANPQPAIVWA------SSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAH 263
+ +A S++ VYG ++E + P S YAA+K + +A
Sbjct: 112 QCAVDA-------GVGRVVHVSTNQVYGSIDSGSWTESSPLE-PNSPYAASKAGSDLVAR 163
Query: 264 TYNHIYGLSLTGLRFFTVYGPWGRPDMAYFF-------FTRDILNRKSIPIFESPDHGTV 316
Y+ YGL + R YGP Y F ++L+ ++P++ G
Sbjct: 164 AYHRTYGLDVRITRCCNNYGP-------YQHPEKLIPLFVTNLLDGGTLPLYGD---GAN 213
Query: 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERL 376
R++ + DD +G L GRA ++++G + +L IL
Sbjct: 214 VREWVHTDDHCRGIALVLA------------GGRAG-EIYHIGGGLELTNRELTGILLDS 260
Query: 377 LKVKAKRNIMKLP-RNGDVPFTH-----ANISLAQRELGYKPTTDLQTGLKKFVRWYL 428
L + K+ R G H + +RELGY+P GL + VRWY
Sbjct: 261 LGADWSS-VRKVADRKG-----HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYR 312
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 2e-18
Identities = 75/345 (21%), Positives = 136/345 (39%), Gaps = 52/345 (15%)
Query: 88 VRSSARVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL 147
+R S + L+TG AGFVG +++ L + V G +R
Sbjct: 1 MRGSHHHHHHGSMRALITGVAGFVGKYLANHLTEQNVEVFGT-------------SRNNE 47
Query: 148 LERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVS 207
+ + ++ DI D +KK+ + ++ HLAA++ V+ + N +N+ G +
Sbjct: 48 AKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLH 107
Query: 208 LLEVCKNANPQPAIVWASSSSVYGL--NTKVPFSEKDRTDQPASLYAATKKAGEEIAHTY 265
+L+ +++N I+ SS YG+ + P SE+++ +P S Y +K + +A Y
Sbjct: 108 VLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQL-RPMSPYGVSKASVGMLARQY 166
Query: 266 NHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDI----------LNRKSIPIFESPDHG- 314
YG+ + R F GP G+ F T+D I + G
Sbjct: 167 VKAYGMDIIHTRTFNHIGP-GQSLG---FVTQDFAKQIVDIEMEKQEPIIKV------GN 216
Query: 315 -TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSIL 373
RDFT + DIV+ + V+N+ + + D++ +L
Sbjct: 217 LEAVRDFTDVRDIVQAYWLLSQYGKTG-------------DVYNVCSGIGTRIQDVLDLL 263
Query: 374 ERLLKVKAKRNI-MKLPRNGDVPFTHANISLAQRELGYKPTTDLQ 417
+ VK + R +VP + + G+KP L+
Sbjct: 264 LAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLE 308
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 9e-17
Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 63/258 (24%)
Query: 97 RNGISVLVTGAAGFVGTHV--SAALKRRGDGVLGLD------NFNDYYDPSLKKARQALL 148
N +++LVTG AGF+G++ ++ D N N ++K ++
Sbjct: 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLN-----NVK----SIQ 72
Query: 149 ERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSL 208
+ + V+G+I + LL+ + +++ AA++ V +++NP + +N+ G V+L
Sbjct: 73 DHPNYYFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTL 132
Query: 209 LEVCKNANPQPAIVWA------SSSSVYG-LNTKVPFSEKDRTDQPASLYAATKKAGEEI 261
LE+ K S+ VYG L F+E+ P S Y+++K + + I
Sbjct: 133 LELVKKY-------PHIKLVQVSTDEVYGSLGKTGRFTEETPLA-PNSPYSSSKASADMI 184
Query: 262 AHTYNHIYGLSLTGLRFFTV-------YGPWGRPDMAYFF-------FTRDILNRKSIPI 307
A Y Y L + YGP Y + + L K +P+
Sbjct: 185 ALAYYKTYQLP-------VIVTRCSNNYGP-------YQYPEKLIPLMVTNALEGKKLPL 230
Query: 308 FESPDHGTVARDFTYIDD 325
+ G RD+ ++ D
Sbjct: 231 YGD---GLNVRDWLHVTD 245
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 405 QRELGYKPTTDLQTGLKKFVRWYL 428
+ E ++P + GL++ V+WY
Sbjct: 312 KNEFDWEPKYTFEQGLQETVQWYE 335
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 2e-15
Identities = 46/304 (15%), Positives = 78/304 (25%), Gaps = 51/304 (16%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDG-----VLGLDNFNDYYDPSLKKARQALLERSGIFI 155
L+ G G +G ++ L V G+ + R A E + I
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR----------RTRPAWHEDNPINY 52
Query: 156 VEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA 215
V+ DI+D + + T V H+ +N ++L+
Sbjct: 53 VQCDISDPDDSQAKLSPL--TDVTHVFYVTWAN--RSTEQENCEANSKMFRNVLDAVIPN 108
Query: 216 NPQPA-IVWASSSSVY---------GLNTKVPFSEKD-RTDQPASLYAATKKAGEEIAHT 264
P I + Y + P++E R Y EE+
Sbjct: 109 CPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKK 168
Query: 265 YNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA-----RD 319
GL+ + R ++G M G A D
Sbjct: 169 ----EGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSD 224
Query: 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKV 379
+ D I + + A A+ FN+ N +L V
Sbjct: 225 CSDADLIAEHHIWAAVDP------------YAKNEAFNVSNGDVFKWKHFWKVLAEQFGV 272
Query: 380 KAKR 383
+
Sbjct: 273 ECGE 276
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 37/239 (15%)
Query: 102 VLVTGAAGFVGTH-VSAALKRRGDG-VLGLD------NFNDYYDPSLKKARQALLERSGI 153
+LVTG GF+G++ + L++ D V+ +D N +LK L +
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPA-----NLK----DLEDDPRY 56
Query: 154 FIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCK 213
V+GD+ D L+K+L V+HLAA++ V ++ +P ++HSN+ G +LLE +
Sbjct: 57 TFVKGDVADYELVKELVR--KVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIR 114
Query: 214 NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSL 273
NP+ V S+ VYG K F+E DR P+S Y+ATK A + + + Y L+
Sbjct: 115 RENPEVRFVHVSTDEVYGDILKGSFTENDRLM-PSSPYSATKAASDMLVLGWTRTYNLNA 173
Query: 274 TGLRFFTVYGPWGRPDMAYFF-------FTRDILNRKSIPIFESPDHGTVARDFTYIDD 325
+ R YGP Y F IPI+ + G RD+ Y++D
Sbjct: 174 SITRCTNNYGP-------YQFPEKLIPKTIIRASLGLKIPIYGT---GKNVRDWLYVED 222
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 4e-04
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 405 QRELGYKPTTDLQTGLKKFVRWYL 428
R+L ++P G+KK + WYL
Sbjct: 289 TRDLKWRPKYTFDEGIKKTIDWYL 312
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 3e-15
Identities = 66/270 (24%), Positives = 106/270 (39%), Gaps = 80/270 (29%)
Query: 102 VLVTGAAGFVGTH-VSAALKRRGDGVLGLD------NFNDYYDPSLKKARQALLERSGIF 154
+L+TG AGF+G+ V +K D V+ +D N SL + E +
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLE-----SLS----DISESNRYN 53
Query: 155 IVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKN 214
DI D A + ++F+ VMHLAA++ V ++ P +++ +NI G +LLEV +
Sbjct: 54 FEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARK 113
Query: 215 ANPQPAIVWASSSS---------------VYG----------LNTKVPFSEKDRTDQPAS 249
W++ VYG T F+E P+S
Sbjct: 114 Y-------WSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYA-PSS 165
Query: 250 LYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV-------YGPWGRPDMAYFF-------F 295
Y+A+K + + + + YGL T+ YGP Y F
Sbjct: 166 PYSASKASSDHLVRAWRRTYGLP-------TIVTNCSNNYGP-------YHFPEKLIPLV 211
Query: 296 TRDILNRKSIPIFESPDHGTVARDFTYIDD 325
+ L K +PI+ G RD+ Y++D
Sbjct: 212 ILNALEGKPLPIYGK---GDQIRDWLYVED 238
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 9e-04
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 405 QRELGYKPTTDLQTGLKKFVRWYLS 429
RELG+KP ++G++K V WYL+
Sbjct: 312 SRELGWKPLETFESGIRKTVEWYLA 336
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 5e-14
Identities = 59/399 (14%), Positives = 110/399 (27%), Gaps = 82/399 (20%)
Query: 33 FHSSLAKLTFWSFIFLAVILIFFFRSPSSNPL------PSADPSRRSLRTYDWGGPAFEK 86
H + L + P+S+P + S T D A
Sbjct: 7 HHHHSSGLVP------RGSHMGRDARPTSDPRLVSVHGDNPTEVHASDLTLDRFIDADTL 60
Query: 87 RVRSSARVRARNGISVLVTGAAGFVGTH----------VSA---ALKRRGDGVLGLD--- 130
+ + +VL+TGA GF+G + V L R
Sbjct: 61 ATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLE 120
Query: 131 -NFNDYYDPSLKKARQALLERSGIFIVEGDINDMAL------LKKLFDVVSFTHVMHLAA 183
F+ L+ ++ +R + +V GD ++ L ++L + V ++ AA
Sbjct: 121 KTFDSGDPELLRHFKELAADR--LEVVAGDKSEPDLGLDQPMWRRLAETV--DLIVDSAA 176
Query: 184 QAGVRYAMQNPNSYVHS---NIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSE 240
V Y N+AG L+ + +P + S++ V F+E
Sbjct: 177 M--VNA-----FPYHELFGPNVAGTAELIRIALTTKLKP-FTYVSTADVGAAIEPSAFTE 228
Query: 241 KDRTDQPASL----------YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGP------ 284
+ Y +K AGE + N + L + R +
Sbjct: 229 DADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQ 288
Query: 285 WGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR-----DFTYIDDIVKGCLAALDTAEK 339
D ++ P R D + + +
Sbjct: 289 LNMSDWVTRMV-LSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAG 347
Query: 340 STGSGGKKRGRAQLRVFNLGNTSPVPVS--DLVSILERL 376
S+ +G +++ N + + V L
Sbjct: 348 SSLAGF--------ATYHVMNPHDDGIGLDEYVDWLIEA 378
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 1e-13
Identities = 24/189 (12%), Positives = 57/189 (30%), Gaps = 21/189 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+++ GA+GFVG+ + RG V + P K L+ + + D++
Sbjct: 7 IVLIGASGFVGSALLNEALNRGFEVTAVV-----RHPEKIKIENEHLK-----VKKADVS 56
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
+ + ++ V+ + + I +++++ K A
Sbjct: 57 SLDEVCEVCK--GADAVISAFNPGWNNPDIYDE------TIKVYLTIIDGVKKAGVNR-F 107
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
+ + + + D + P ++ K GE + +
Sbjct: 108 LMVGGAGSLFIAPGLRL--MDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAAD 165
Query: 282 YGPWGRPDM 290
P R
Sbjct: 166 MRPGVRTGR 174
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 8e-13
Identities = 56/255 (21%), Positives = 95/255 (37%), Gaps = 60/255 (23%)
Query: 102 VLVTGAAGFVGTH-VSAALKRRGDG-VLGLD------NFNDYYDPSLKKARQALLERSGI 153
++VTG AGF+G++ V D V LD N +L+ + +
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKA-----NLEA-----ILGDRV 56
Query: 154 FIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCK 213
+V GDI D L+ KL ++H AA++ ++ +P+ ++H+N G +LLE +
Sbjct: 57 ELVVGDIADAELVDKLAA--KADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAAR 114
Query: 214 NANPQPAIVWA-----SSSSVYG-LNTKVPFSEKDRTD----------QPASLYAATKKA 257
S+ VYG L + P+S Y++TK A
Sbjct: 115 KY-------DIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAA 167
Query: 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFF-------FTRDILNRKSIPIFES 310
+ I + +G+ T YGP Y +IL ++
Sbjct: 168 SDLIVKAWVRSFGVKATISNCSNNYGP-------YQHIEKFIPRQITNILAGIKPKLYGE 220
Query: 311 PDHGTVARDFTYIDD 325
G RD+ + +D
Sbjct: 221 ---GKNVRDWIHTND 232
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 8e-12
Identities = 39/240 (16%), Positives = 74/240 (30%), Gaps = 43/240 (17%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKAR---QALLERSGIFIVEG 158
+ + GA G G+ + K RG V + R + I I++
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAI-------------VRNAGKITQTHKDINILQK 49
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
DI D+ + L+ Q V A ++ L L+ V
Sbjct: 50 DIFDLT-------------LSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSP 96
Query: 219 PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRF 278
+V ++S+ E + + A Y + +++ H +H S T +
Sbjct: 97 RLLVVGGAASLQIDEDGNTLLE-SKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISP 155
Query: 279 FTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338
++ P R T D K +F S + ++ +D L ++
Sbjct: 156 SAMFEPGER--------TGDYQIGKDHLLFGSDGNSFISM-----EDYAIAVLDEIERPN 202
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 45/292 (15%), Positives = 87/292 (29%), Gaps = 65/292 (22%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
+L+ GA G++G HV+ A G L + S K + SG IV G I
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 161 NDMALLKKLFD----VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
+D A L + V+S + + +Q V++++ K
Sbjct: 66 DDHASLVEAVKNVDVVISTVGSLQIESQ---------------------VNIIKAIKEVG 104
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGL 276
S +G + + +PA K I +
Sbjct: 105 TVKRFF----PSEFGNDV-----DNVHAVEPAKSVFEVKAK------VRRAIEAEGIPYT 149
Query: 277 RFFTVYGPWGRPDMAYFF-----FTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331
+ + YF R + I G F +DI +
Sbjct: 150 YVSS--NCF----AGYFLRSLAQAGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTI 200
Query: 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR 383
A+D + ++ + + +++LV++ E+ + ++
Sbjct: 201 KAVDDPRTLNKT-----------LYLRLPANTLSLNELVALWEKKIDKTLEK 241
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-09
Identities = 48/330 (14%), Positives = 103/330 (31%), Gaps = 67/330 (20%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
++L G G+ +S AL +G ++G S + + SG +
Sbjct: 7 TLLSFGH-GYTARVLSRALAPQGWRIIGT---------SRNPDQMEAIRASGAEPLLWPG 56
Query: 161 NDMALLKKLFDVVSFTHVM-HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
+ +L TH++ A +G + A A
Sbjct: 57 EEPSLD-------GVTHLLISTAPDSGGDPVLAA---LGDQIAA----------RAAQFR 96
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
+ + S+++VYG + + ++ P + + E+ + L L R
Sbjct: 97 WVGYLSTTAVYG-DHDGAWVDETTPLTPTAARGRWRVMAEQQWQ---AVPNLPLHVFRLA 152
Query: 280 TVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339
+YGP R ++ +++DI + A++ +
Sbjct: 153 GIYGPG-----------RGPFSKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAASMARPDP 201
Query: 340 STGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVK-------AKRNIMKLPRNG 392
V+N+ + PVP D+++ L + K ++ + R+
Sbjct: 202 G-------------AVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSF 248
Query: 393 DVPFTHANISLAQRELGYKPT-TDLQTGLK 421
+ ELG + + + GL+
Sbjct: 249 YSENKRVRNDRIKEELGVRLKYPNYRVGLE 278
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 5e-09
Identities = 43/297 (14%), Positives = 88/297 (29%), Gaps = 74/297 (24%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGL-DNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+L+ G G +G H+ A + G+ L +P K+ + G+ ++EGD
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63
Query: 160 INDMALLKKLFD----VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA 215
IND L K V+ + + Q V +++ K A
Sbjct: 64 INDHETLVKAIKQVDIVICAAGRLLIEDQ---------------------VKIIKAIKEA 102
Query: 216 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEE------IAHTY---N 266
S +GL+ ++ +P K + + +TY +
Sbjct: 103 GNVKKFF----PSEFGLDV-----DRHDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCH 153
Query: 267 HIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDI 326
G L L P R + I G V + D+
Sbjct: 154 AFTGYFLRNLAQLDATDPP----------------RDKVVIL---GDGNVKGAYVTEADV 194
Query: 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR 383
+ A + + V + + ++++++ E+ + ++
Sbjct: 195 GTFTIRAANDPNTLNKA-----------VHIRLPKNYLTQNEVIALWEKKIGKTLEK 240
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 2e-08
Identities = 36/243 (14%), Positives = 70/243 (28%), Gaps = 41/243 (16%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ G G++G + A G L + K ++ G ++E +
Sbjct: 6 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNID-KVQMLLYFKQLGAKLIEASL 64
Query: 161 NDMALLKKLF---DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217
+D L DVV + + +I + L+E K A
Sbjct: 65 DDHQRLVDALKQVDVVISALAGGVLSH----------------HILEQLKLVEAIKEAGN 108
Query: 218 QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEE--IAHTYNHIYGLSLTG 275
+ S +G++ + ++A E I +TY
Sbjct: 109 IKRFLP----SEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNM----- 159
Query: 276 LRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
F + + R + I+ G V + DD+ + ++D
Sbjct: 160 --FAGYFAGSLAQ-----LDGHMMPPRDKVLIY---GDGNVKGIWVDEDDVGTYTIKSID 209
Query: 336 TAE 338
+
Sbjct: 210 DPQ 212
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 9e-08
Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 25/188 (13%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKAR--QALLERSGIFIVEGD 159
+ V GA G G+ + A +RRG VL + R Q +R G +
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAV-------------VRDPQKAADRLGATVATLV 49
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
+ L + D V V+ + + Y+H + A L+ + +N++
Sbjct: 50 KEPLVLTEADLDSV--DAVVDALSVPW-----GSGRGYLHLDFA--THLVSLLRNSDT-L 99
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
A+ S+S+ P + + ++ G+
Sbjct: 100 AVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGISPS 159
Query: 280 TVYGPWGR 287
+
Sbjct: 160 EAFPSGPA 167
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 153 IFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVC 212
I +GD+ D +++ V +LAAQ+ V + P + + G+ LLE
Sbjct: 65 IQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAI 124
Query: 213 KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD-QPASLYAATKKAGEEIAHTYNHIYGL 271
+ +P+ AS+S ++GL E T P S Y K G I Y +GL
Sbjct: 125 RQFSPETRFYQASTSEMFGLIQAERQDEN--TPFYPRSPYGVAKLYGHWITVNYRESFGL 182
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 24/168 (14%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
L+TGA+G +G +S L R + + ++ L D+
Sbjct: 3 TLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKL------------------DLT 44
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D L+ +++ AA V N + ++ K + I
Sbjct: 45 DFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID--SYI 102
Query: 222 VWASSSSVY-GLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI 268
V S+ V+ G K + E+D + P + Y +K GE A + +
Sbjct: 103 VHISTDYVFDG--EKGNYKEEDIPN-PINYYGLSKLLGETFALQDDSL 147
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 3e-07
Identities = 38/338 (11%), Positives = 83/338 (24%), Gaps = 65/338 (19%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
+++ G G++G + A + G+ I+EG++
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 161 NDMALLKKLFD----VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
+ + + V+S +++Q + ++ K A
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISSQ---------------------IHIINAIKAAG 104
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGL 276
+ S +G ++ + P K+ Y
Sbjct: 105 NIKRFL----PSDFGCEE-----DRIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSANC 155
Query: 277 RFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336
F + + + I I+ G Y +DI K +
Sbjct: 156 -FGAYFVNYL------LHPSPHPNRNDDIVIY---GTGETKFVLNYEEDIAKYTIKVACD 205
Query: 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPF 396
V + + ++L+S+ E + K+ V
Sbjct: 206 PRCCNR-----------IVIYRPPKNIISQNELISLWEAKSGLSFKK----------VHM 244
Query: 397 THANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGG 434
+ +EL + FV+ L Y
Sbjct: 245 PDEQLVRLSQELPQPQNIPVSILHSIFVKGDLMSYEMR 282
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 5e-07
Identities = 51/300 (17%), Positives = 88/300 (29%), Gaps = 71/300 (23%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDG--VLGLDNFNDYYDPSLKKARQALLERSGIFIVEG 158
+VLVTGA+G G V LK D GL ++ A+ + G
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGL----------VRSAQGKEKIGGEADVFIG 55
Query: 159 DINDMALLKKLFD----VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIA-------GLVS 207
DI D + F +V T + P G +
Sbjct: 56 DITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKN 115
Query: 208 LLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNH 267
++ K A + +V S+ G N P + K+ E+
Sbjct: 116 QIDAAKVAGVKHIVV---VGSMGGTNPDHPLN-----KLGNGNILVWKRKAEQY------ 161
Query: 268 IYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFE-----SPDHGTVARDFTY 322
L+ +G +T+ R + + + + D TV R
Sbjct: 162 ---LADSGTP-YTII----RAG----GLLDKEGGVRELLVGKDDELLQTDTKTVPR---- 205
Query: 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK 382
D+ + C+ AL E A+ + F+LG+ + +V ++
Sbjct: 206 -ADVAEVCIQALLFEE------------AKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 40/289 (13%), Positives = 78/289 (26%), Gaps = 65/289 (22%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
+L+ G G++G H+ + G S K + G IV+G++
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-----PNSSKTTLLDEFQSLGAIIVKGEL 67
Query: 161 NDMALLKKLFD----VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
++ L +L V+S + Q +LE K A
Sbjct: 68 DEHEKLVELMKKVDVVISALAFPQILDQ---------------------FKILEAIKVAG 106
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEE-IAHTYNHIYGLSLTG 275
+ S +G+ ++ P K+ I + T
Sbjct: 107 NIKRFL----PSDFGVEE-----DRINALPPFEALIERKRMIRRAIEEA-----NIPYT- 151
Query: 276 LRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
+ + + R + I ++ G Y DI +
Sbjct: 152 ---YVSANCF--ASYFINYLLRPYDPKDEITVY---GTGEAKFAMNYEQDIGLYTIKVAT 203
Query: 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN 384
V +T+ + +L+S E+ + K K+
Sbjct: 204 DPRALNR-----------VVIYRPSTNIITQLELISRWEKKIGKKFKKI 241
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-06
Identities = 39/244 (15%), Positives = 69/244 (28%), Gaps = 48/244 (19%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ GA GF+G V+ A L K LE G IV G I
Sbjct: 12 RVLIAGATGFIGQFVATASLDAHRPTYIL--ARPGPRSPSKAKIFKALEDKGAIIVYGLI 69
Query: 161 NDMALLKKLFD------VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKN 214
N+ ++K+ VVS + Q ++L++ K
Sbjct: 70 NEQEAMEKILKEHEIDIVVSTVGGESILDQ---------------------IALVKAMKA 108
Query: 215 ANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLT 274
+ + + D + ++Y ++ + + + G+ T
Sbjct: 109 VGTIKRFLPSEFGH--------DVNRADPVEPGLNMYREKRRVRQLVEES-----GIPFT 155
Query: 275 GLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334
+ W + + + I G V F DI K + +
Sbjct: 156 YI-CCNSIASWPYYNNIHPSEVLPPTDFFQI-----YGDGNVKAYFVAGTDIGKFTMKTV 209
Query: 335 DTAE 338
D
Sbjct: 210 DDVR 213
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Length = 321 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 65/362 (17%), Positives = 128/362 (35%), Gaps = 87/362 (24%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V + G G VG+ + L++RGD L + + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVEL------------VLRTRDEL-----------NLL 42
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYA-MQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D + F V AA+ G A P +++ N+ +++ +
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-K 101
Query: 221 IVWASSSSVYGLNTKVPFSEK-------DRTDQPASLYAATKKAGEEIAHTYNHIYGLSL 273
+++ SS +Y K P +E + T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGR-- 156
Query: 274 TGLRFFTV-----YGPWGR---------PDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319
+ +V YGP P + F + ++ S GT R+
Sbjct: 157 ---DYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGS---GTPMRE 210
Query: 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKV 379
F ++DD+ + ++ A + + L N+G + +L + +++
Sbjct: 211 FLHVDDMAAASIHVMELAHEVWLENTQPM----LSHINVGTGVDCTIRELAQTIAKVVGY 266
Query: 380 KAK------------RNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
K + R ++ +++ +LG+ L+ GL +W+
Sbjct: 267 KGRVVFDASKPDGTPRKLL-------------DVTRL-HQLGWYHEISLEAGLASTYQWF 312
Query: 428 LS 429
L
Sbjct: 313 LE 314
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 3e-06
Identities = 31/247 (12%), Positives = 75/247 (30%), Gaps = 55/247 (22%)
Query: 102 VLVTGAAGFVGTH-VSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
+ + GAAG + + L + + +++ + ++EG
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDMHITLYGR-----QLK-TRIPPEIIDHERVTVIEGSF 61
Query: 161 NDMALLKKLF---DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217
+ L++ +VV + + A + A+ N
Sbjct: 62 QNPGXLEQAVTNAEVVFVGAMESGSDMASIVKALSRXN---------------------- 99
Query: 218 QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 277
++ S + + G V + + P S ++A + + L+ T LR
Sbjct: 100 IRRVIGVSMAGLSG-EFPVALEKWTFDNLPISYVQGERQARNVLRES-----NLNYTILR 153
Query: 278 FFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337
+ + + + + + IP + V+R + +VK L A
Sbjct: 154 ------------LTWLYNDPEXTDYELIPEGAQFNDAQVSR-----EAVVKAIFDILHAA 196
Query: 338 EKSTGSG 344
+++
Sbjct: 197 DETPFHR 203
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 4e-06
Identities = 32/173 (18%), Positives = 52/173 (30%), Gaps = 49/173 (28%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
VLVTGA G +G V ++ +G + ++
Sbjct: 5 VLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-----------------FEQVNLL 47
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP------NSYVHSNIAGLVSLLEVCKNA 215
D + + ++H AA+ P N N+A +
Sbjct: 48 DSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLA------KEAAAV 101
Query: 216 NPQPAIVWASSSSVY--------GLNTKVPFSEKDRTDQPASLYAATKKAGEE 260
A + +Y G T P+ E+D P +LY TK GE+
Sbjct: 102 G---AFL------IYISSDYVFDG--TNPPYREEDIPA-PLNLYGKTKLDGEK 142
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Length = 345 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 153 IFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVC 212
+ I+ D+ + + + + + V V +LAAQ+ V + + P + G++ +LE
Sbjct: 54 VKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEAL 113
Query: 213 KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD-QPASLYAATKKAGEEIAHTYNHIYGL 271
+ P AS+S ++G ++P +EK T P S YA K G I Y Y +
Sbjct: 114 RTVKPDTKFYQASTSEMFGKVQEIPQTEK--TPFYPRSPYAVAKLFGHWITVNYREAYNM 171
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Length = 372 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Query: 135 YYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP 194
Y DP + + GD++D + L ++ V V +L A + V + ++P
Sbjct: 47 YQDPHTCNPK--------FHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESP 98
Query: 195 NSYVHSNIAGLVSLLEVCKNANPQPAIVW--ASSSSVYGLNTKVPFSEKDRTD-QPASLY 251
+ G + LLE + + + AS+S +YGL ++P E T P S Y
Sbjct: 99 EYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET--TPFYPRSPY 156
Query: 252 AATKKAGEEIAHTYNHIYGL 271
A K I Y YG+
Sbjct: 157 AVAKLYAYWITVNYRESYGM 176
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 30/163 (18%), Positives = 46/163 (28%), Gaps = 33/163 (20%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+ + GA G G A + G V L D S R +V GD+
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVL-----VRDSS----RLPSEGPRPAHVVVGDVL 56
Query: 162 DMALLKKLF---DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
A + K D V G R N S G +++ K
Sbjct: 57 QAADVDKTVAGQDAVIVL--------LGTR----NDLSPTTVMSEGARNIVAAMKAHGV- 103
Query: 219 PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEI 261
+V +S+ + TKVP + ++
Sbjct: 104 DKVVACTSAFLLWDPTKVPPRLQA--------VTDDHIRMHKV 138
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 40/166 (24%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSL---KKARQALLERSGIFIVEG 158
VL+ GA G + HV L + +L + A+ + I+ G
Sbjct: 26 VLILGAGGQIARHVINQLADKQT-----------IKQTLFARQPAKIHKPYPTNSQIIMG 74
Query: 159 DINDMALLKKLF---DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA 215
D+ + A LK+ D+V A G +Q + ++ K
Sbjct: 75 DVLNHAALKQAMQGQDIV-------YANLTGEDLDIQANS------------VIAAMKAC 115
Query: 216 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEI 261
+ + +++ S +Y +VP + + + +
Sbjct: 116 DVK-RLIFVLSLGIYD---EVPGKFVEWNNAVIGEPLKPFRRAADA 157
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-05
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
+ V GA G +G ++A LK + V D+ A A+L R G+ + D
Sbjct: 8 ICVVGA-GKIGQMIAALLKTSSNYSVTVADH---------DLAALAVLNRMGVATKQVDA 57
Query: 161 NDMALLKKL---FDVVSFT-------HVMHLAAQAGVRY 189
D A L K FD V + A AG Y
Sbjct: 58 KDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHY 96
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 375 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 135 YYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP 194
Y +P + + GD+ D L K+ + V T + +L AQ+ V+ +
Sbjct: 70 YKNPQAHIEGN-------MKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLA 122
Query: 195 NSYVHSNIAGLVSLLEVCKNANPQPAIVW--ASSSSVYGLNTKVPFSEKDRTD-QPASLY 251
+ G + LL+ K ++ + AS+S +YG ++P E T P S Y
Sbjct: 123 EYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET--TPFYPRSPY 180
Query: 252 AATKKAGEEIAHTYNHIYGL 271
A K I + Y L
Sbjct: 181 GAAKLYAYWIVVNFREAYNL 200
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 7e-05
Identities = 69/420 (16%), Positives = 139/420 (33%), Gaps = 101/420 (24%)
Query: 68 DPSRRSL-------RTYDWGGPAFEK----RVRSSARVR-----ARNGISVLVTGAAGFV 111
PS + R Y+ F K R++ ++R R +VL+ G G
Sbjct: 104 QPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS- 161
Query: 112 GTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQ--ALLERSGIFIVEGDINDMALLKKL 169
G A V +F ++ +LK +LE + + D N +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 170 FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV 229
++ H + QA +R +++ Y + L+ LL V N + W +
Sbjct: 221 SNIKLRIH----SIQAELRRLLKSK-PYENC----LLVLLNVQ---NAK---AWNA---- 261
Query: 230 YGLNTKVPFSEKDR--TDQPASLYAATKKAGEEIAHTYNHIYGLSL----TGLRFFTVYG 283
+ L+ K+ + + + TD S T + + + T SL R +
Sbjct: 262 FNLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-- 318
Query: 284 P----WGRPDMAYFF--FTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337
P P RD L +++ H + + I++ L L+ A
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLAT-----WDNWKHVNCDK----LTTIIESSLNVLEPA 369
Query: 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVP---------------VSDLVSILER--LLKVK 380
E +K +L VF + +P V +V+ L + L++ +
Sbjct: 370 EY------RKMFD-RLSVFPPS--AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 381 AKRNIMKLP--------RNGDVPFTHANISLAQREL--GYKPTTDLQTGLKKFVRWYLSY 430
K + + +P + + H +I + + + + L ++ ++ +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI- 160
+ V GA G G + G V + + L + + +G +
Sbjct: 8 IAVVGATGRQGASLIRVAAAVGHHVRAQVH-----SLK-GLIAEELQAIPNVTLFQGPLL 61
Query: 161 NDMALLKKLFDVV 173
N++ L+ LF+
Sbjct: 62 NNVPLMDTLFEGA 74
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 52/337 (15%), Positives = 107/337 (31%), Gaps = 57/337 (16%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLG-LDNFNDYYDPSLKKARQALLERSG----IFIV 156
V VTG GF+G+ + +L G V + DP K+ L G +
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRA-----DPERKRDVSFLTNLPGASEKLHFF 58
Query: 157 EGDINDMALLKKLFD--VVSFTHVMHLAAQAGVRYAMQNP-NSYVHSNIAGLVSLLEVCK 213
D+++ F + + H A + + +A+ P + G + +L+ C
Sbjct: 59 NADLSN----PDSFAAAIEGCVGIFHTA--SPIDFAVSEPEEIVTKRTVDGALGILKACV 112
Query: 214 NANPQPAIVWASSSS--VYGLNTKVPFSEKDRTD--------QPASLYAATKKAGEEIAH 263
N+ ++ SS S + K E D +D YA +K E+
Sbjct: 113 NSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVL 172
Query: 264 TYNHIYGLSLTGLRFFTVYGPWGRPDM-AYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322
+ G+ + L + G + P + ++ K V
Sbjct: 173 EFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGK-KEQIGVTRFHMV--H--- 226
Query: 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERL---LKV 379
+DD+ + + L+ + GR +N VP+ ++ +L ++
Sbjct: 227 VDDVARAHIYLLENSVPG--------GR-----YNCSP-FIVPIEEMSQLLSAKYPEYQI 272
Query: 380 KAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDL 416
+ ++ + + G+ +
Sbjct: 273 LTVDELKEIKGARLPDLN----TKKLVDAGFDFKYTI 305
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 38/165 (23%), Positives = 58/165 (35%), Gaps = 39/165 (23%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+TGA G +G + LK + V+ D Q L DI
Sbjct: 15 ILITGANGQLGREIQKQLKGKNVEVIPTD-------------VQDL-----------DIT 50
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP------NSYVHSNIAGLVSLLEVCKNA 215
++ + K F+ V++ AA V + N+ N+A +
Sbjct: 51 NVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLA------AAAYSV 104
Query: 216 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEE 260
IV S+ V+ K P +E D + P S Y TK GE
Sbjct: 105 G--AEIVQISTDYVFDGEAKEPITEFDEVN-PQSAYGKTKLEGEN 146
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 21/161 (13%), Positives = 48/161 (29%), Gaps = 30/161 (18%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+ + G+ G VG + +L + + K + + D
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAG---------ARKVEQVPQYNNVKAVHFDVDWT 53
Query: 162 DMALLKKL--FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
+ K+L D + +G S + ++ G V L++ + A +
Sbjct: 54 PEEMAKQLHGMDAIINV--------SGSG-----GKSLLKVDLYGAVKLMQAAEKAEVKR 100
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEE 260
I+ S+++ L + + Y K +
Sbjct: 101 FIL---LSTIFSLQPEKWIGAGFDALKD---YYIAKHFADL 135
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 36/187 (19%)
Query: 80 GGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS 139
G S G+ VLV GA G V ++ + LK +G + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM---------- 51
Query: 140 LKKARQA--LLERSGIFIVEGDIND-MALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNS 196
++ Q L ER IV ++ + + D V F AG +
Sbjct: 52 VRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFA--------AGSGPH-TGADK 102
Query: 197 YVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL--YAAT 254
+ ++ G + ++ + + SS D P ++ Y
Sbjct: 103 TILIDLWGAIKTIQEAEKRGI-KRFIMVSSVGTV-----------DPDQGPMNMRHYLVA 150
Query: 255 KKAGEEI 261
K+ ++
Sbjct: 151 KRLADDE 157
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Length = 381 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 23/146 (15%)
Query: 135 YYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP 194
Y DP + + D+ D + L++ DV+ V +LAAQ+ V + + P
Sbjct: 74 YIDPHNVNKAL-------MKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIP 126
Query: 195 NSYVHSNIAGLVSLLEVCKNANPQPA----IVWASSSSVYGL-----NTKVPFSEKDRTD 245
+ G + LLE ++ A SS ++G + PF
Sbjct: 127 DYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPF------- 179
Query: 246 QPASLYAATKKAGEEIAHTYNHIYGL 271
P S YAA+K A Y YGL
Sbjct: 180 HPRSPYAASKCAAHWYTVNYREAYGL 205
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 27/105 (25%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDG--VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ +TGA G +G +V +L + ++ + +P A+ L GI + + D
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAI-----VRNP----AKAQALAAQGITVRQAD 52
Query: 160 INDMALLKKLFD------VVSFTHVMH----------LAAQAGVR 188
D A L ++S + V A AGV+
Sbjct: 53 YGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVK 97
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 7e-04
Identities = 35/196 (17%), Positives = 70/196 (35%), Gaps = 51/196 (26%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V++TGA G +G + L + D ++ L DI
Sbjct: 8 VIITGANGQLGKQLQEELNPEEYDIYPFD-------------KKLL-----------DIT 43
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP------NSYVHSNIAGLVSLLEVCKNA 215
+++ ++++ + ++H AA V A + N+ N+A +
Sbjct: 44 NISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVA------VASQLV 97
Query: 216 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEE--IAHTYNHIYGLSL 273
+V+ S+ V+ + + E P ++Y A+K AGE+ +
Sbjct: 98 G--AKLVYISTDYVFQGDRPEGYDEFHNPA-PINIYGASKYAGEQFVKELHNKYFI---- 150
Query: 274 TGLRFFT--VYGPWGR 287
+R T +YG +G
Sbjct: 151 --VR--TSWLYGKYGN 162
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 41/254 (16%), Positives = 77/254 (30%), Gaps = 64/254 (25%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
V+V G G G V+ L G V + +P K A++ L G +V+GD
Sbjct: 8 VVVFGGTGAQGGSVARTLLEDGTFKVRVVTR-----NPRKKAAKE--LRLQGAEVVQGDQ 60
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVS----LLEVCKNAN 216
+D +++ G N + + V L ++ +
Sbjct: 61 DDQVIMELAL--------------NGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLG 106
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEE-IAHTYNHIYGLSLTG 275
+V++ ++ +K + A+ + K EE G+ +T
Sbjct: 107 LH-YVVYSGLENI----------KKLTAGRLAAAHFDGKGEVEEYFRDI-----GVPMTS 150
Query: 276 LR-------FFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVK 328
+R + + P PD + + + + D G V
Sbjct: 151 VRLPCYFENLLSHFLPQKAPDGKSYLLSLPTGDVP-MDGMSVSDLGPVVL---------- 199
Query: 329 GCLAALDTAEKSTG 342
+ L EK G
Sbjct: 200 ---SLLKMPEKYVG 210
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 439 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.98 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.97 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.97 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.96 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.96 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.96 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.96 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.96 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.96 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.96 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.95 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.95 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.95 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.95 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.95 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.95 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.95 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.95 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.95 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.95 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.95 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.95 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.95 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.95 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.94 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.94 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.94 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.94 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.94 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.94 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.94 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.94 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.94 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.94 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.94 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.94 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.94 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.94 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.94 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.94 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.94 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.94 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.94 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.94 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.94 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.94 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.94 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.94 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.94 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.94 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.94 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.94 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.94 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.94 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.94 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.94 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.94 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.94 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.94 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.94 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.94 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.94 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.94 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.94 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.94 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.94 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.94 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.94 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.94 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.94 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.94 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.94 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.94 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.94 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.93 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.93 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.93 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.93 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.93 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.93 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.93 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.93 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.93 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.93 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.93 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.93 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.93 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.93 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.93 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.93 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.93 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.93 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.93 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.93 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.93 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.93 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.93 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.93 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.93 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.93 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.93 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.93 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.93 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.93 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.93 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.93 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.93 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.93 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.93 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.93 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.93 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.93 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.93 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.93 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.93 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.93 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.93 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.93 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.93 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.93 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.93 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.93 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.93 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.93 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.93 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.93 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.93 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.93 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.93 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.93 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.93 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.93 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.93 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.93 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.93 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.93 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.93 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.92 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.92 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.92 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.92 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.92 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.92 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.92 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.92 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.92 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.92 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.92 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.92 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.92 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.92 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.92 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.92 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.92 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.92 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.92 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.92 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.92 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.92 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.92 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.92 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.92 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.92 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.92 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.92 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.92 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.92 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.92 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.92 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.92 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.92 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.92 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.92 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.92 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.92 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.92 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.92 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.92 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.92 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.92 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.92 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.92 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.91 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.91 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.91 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.91 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.91 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.91 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.91 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.91 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.91 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.91 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.91 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.91 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.91 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.91 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.91 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.91 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.91 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.91 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.91 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.91 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.91 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.9 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.9 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.9 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.9 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.9 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.9 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.89 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.89 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.89 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.89 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.89 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.89 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.88 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.88 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.87 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.87 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.87 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.87 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.86 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.85 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.84 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.82 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.81 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.81 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.81 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.8 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.8 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.74 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.74 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.73 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.73 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.73 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.69 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.69 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.69 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.68 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.62 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.48 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.39 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.16 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.14 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.07 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.88 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.84 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.71 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.71 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.67 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.64 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.64 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.6 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.56 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.49 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.44 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.36 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.33 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.33 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.32 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.29 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.28 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.26 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.23 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.11 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.11 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.86 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.84 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.84 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.83 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.83 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.81 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.76 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.74 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.73 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.73 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.73 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.71 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.69 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.68 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.67 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.67 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.62 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.58 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.57 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.57 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.56 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.55 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.55 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.53 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.51 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.5 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.48 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.46 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 97.46 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.43 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.42 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.39 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.39 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.37 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.35 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.35 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.32 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.31 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.31 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.31 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.31 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.3 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.3 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.27 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.24 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.24 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 97.24 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.24 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.23 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.22 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.21 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.21 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.19 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.18 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.15 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.14 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.13 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.13 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.08 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.07 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.04 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 97.03 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.01 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.0 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.99 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.99 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.96 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.95 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.95 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.94 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.92 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.88 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.85 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.84 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.83 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.8 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 96.8 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.79 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.76 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.75 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.75 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.73 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.73 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.71 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 96.69 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.69 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.68 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.66 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.66 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.61 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.58 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.57 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.55 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.55 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.55 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.52 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.52 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.51 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.51 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.5 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.5 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.46 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.41 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.36 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.36 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.35 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.34 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.34 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.33 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.31 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.29 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.28 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.28 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.28 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.27 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.25 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.24 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.21 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.2 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.2 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.15 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 96.1 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.1 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.09 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.06 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.05 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 96.05 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.98 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.98 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.95 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.95 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 95.94 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 95.93 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 95.91 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 95.91 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 95.83 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 95.81 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.8 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.78 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 95.77 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.76 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.74 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.74 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.74 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 95.72 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 95.71 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 95.7 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 95.7 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 95.7 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.68 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 95.62 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.61 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 95.61 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 95.6 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 95.58 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.53 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.52 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 95.5 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.47 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 95.47 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 95.45 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=374.26 Aligned_cols=318 Identities=28% Similarity=0.483 Sum_probs=266.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
+.+|+|||||||||||++++++|+++|++|++++|................. ...+++++.+|++|.+++.++++++
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 101 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV- 101 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC-
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC-
Confidence 5779999999999999999999999999999999966533222211111000 0168999999999999999999966
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|+|||+||.........++...+++|+.++.+++++|++.+.. +||++||.++||.....++.|+++. .|.+.|+.+
T Consensus 102 -d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 178 (351)
T 3ruf_A 102 -DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-SFTYAASSSTYGDHPALPKVEENIG-NPLSPYAVT 178 (351)
T ss_dssp -SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEecHHhcCCCCCCCCccCCCC-CCCChhHHH
Confidence 9999999986666667788899999999999999999999854 9999999999998888888888876 788999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
|+++|.+++.+.+++|++++++||++||||+..+. ..+..++..++.+..+.++ ++++..++|+|++|+|+++
T Consensus 179 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~Dva~a~ 255 (351)
T 3ruf_A 179 KYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYIN---GDGETSRDFCYIDNVIQMN 255 (351)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEe---CCCCeEEeeEEHHHHHHHH
Confidence 99999999999988899999999999999987655 5677888888999888876 5788999999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccccccc----CCCCCCCCcccCChHHHHH
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK----LPRNGDVPFTHANISLAQR 406 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~----~~~~~~~~~~~~d~~k~~~ 406 (439)
+.++...... .+++||+++++++|+.|+++.+.+.+|.+......+ .....+.....+|++|+++
T Consensus 256 ~~~~~~~~~~-----------~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 324 (351)
T 3ruf_A 256 ILSALAKDSA-----------KDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAID 324 (351)
T ss_dssp HHHHTCCGGG-----------CSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHH
T ss_pred HHHHhhcccc-----------CCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHH
Confidence 9998873221 238999999999999999999999999733221111 1234455667899999999
Q ss_pred HcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 407 ELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 407 ~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
+|||+|+++++++|+++++||+++.+
T Consensus 325 ~lG~~p~~~~~~~l~~~~~~~~~~~~ 350 (351)
T 3ruf_A 325 LLKYRPNIKIREGLRLSMPWYVRFLK 350 (351)
T ss_dssp HHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998754
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=372.76 Aligned_cols=317 Identities=23% Similarity=0.382 Sum_probs=259.8
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
..+.+|+|||||||||||++|+++|+++| ++|++++|......... ........++.++.+|++|.+++.+++++
T Consensus 20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 96 (346)
T 4egb_A 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNN---VKSIQDHPNYYFVKGEIQNGELLEHVIKE 96 (346)
T ss_dssp ----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGG---GTTTTTCTTEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhh---hhhhccCCCeEEEEcCCCCHHHHHHHHhh
Confidence 33677899999999999999999999999 77888887543222111 11112336899999999999999999998
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCC-CCCCCCCCCCCCCCCChH
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLN-TKVPFSEKDRTDQPASLY 251 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~-~~~~~~e~~~~~~p~~~Y 251 (439)
.++|+|||+||.........++...+++|+.|+.+++++|++.+.. +||++||.++||.. ...++.|+++. .|.+.|
T Consensus 97 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vy~~~~~~~~~~E~~~~-~p~~~Y 174 (346)
T 4egb_A 97 RDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI-KLVQVSTDEVYGSLGKTGRFTEETPL-APNSPY 174 (346)
T ss_dssp HTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS-EEEEEEEGGGGCCCCSSCCBCTTSCC-CCCSHH
T ss_pred cCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeCchHHhCCCCcCCCcCCCCCC-CCCChh
Confidence 6669999999987665566788899999999999999999999864 99999999999976 45678888766 788999
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHH
Q 013602 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 331 (439)
+.+|+++|.+++++.+++|++++++||++||||+..+...+..++..+..+..+.++ +++...++|+|++|+|++++
T Consensus 175 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~ 251 (346)
T 4egb_A 175 SSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLY---GDGLNVRDWLHVTDHCSAID 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEE---TTSCCEECEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceee---CCCCeEEeeEEHHHHHHHHH
Confidence 999999999999999988999999999999999988777888899999999988887 57889999999999999999
Q ss_pred HHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCC
Q 013602 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYK 411 (439)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~ 411 (439)
.+++.+.. +++||+++++++|+.|+++.+.+.+|.+.+................+|++|++++|||+
T Consensus 252 ~~~~~~~~-------------g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 318 (346)
T 4egb_A 252 VVLHKGRV-------------GEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWE 318 (346)
T ss_dssp HHHHHCCT-------------TCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCC
T ss_pred HHHhcCCC-------------CCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCC
Confidence 99987652 27999999999999999999999999876633333334445556679999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHcc
Q 013602 412 PTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 412 p~~~l~e~l~~~v~~~~~~~~ 432 (439)
|+++++|+|+++++||+++.+
T Consensus 319 p~~~~~e~l~~~~~~~~~~~~ 339 (346)
T 4egb_A 319 PKYTFEQGLQETVQWYEKNEE 339 (346)
T ss_dssp CCCCHHHHHHHHHHHHHHCHH
T ss_pred CCCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999988753
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=361.68 Aligned_cols=320 Identities=26% Similarity=0.396 Sum_probs=261.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+|+||||||+||||++++++|+++|++|++++|+............ .....++.++.+|++|.+++.++++..++|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIE--KITGKTPAFHETDVSDERALARIFDAHPITA 81 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHH--HHHSCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHH--hhcCCCceEEEeecCCHHHHHHHHhccCCcE
Confidence 46899999999999999999999999999999997765443332221 2234589999999999999999999666799
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a 257 (439)
||||||........+++...+++|+.++.++++++++.+.. +||++||.++||.....+++|+.+. .|.+.|+.+|++
T Consensus 82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~e~~~~-~~~~~Y~~sK~~ 159 (341)
T 3enk_A 82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-RIVFSSSATVYGVPERSPIDETFPL-SATNPYGQTKLM 159 (341)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGBCSCSSSSBCTTSCC-BCSSHHHHHHHH
T ss_pred EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEecceEecCCCCCCCCCCCCC-CCCChhHHHHHH
Confidence 99999987665566778889999999999999999998854 9999999999998888888888776 688999999999
Q ss_pred HHHHHHHHHhHhC-CcEEEEeeccccCCCCC----------CCChHHHHHHHHHcC-CCCceeec---CCCCcceeeeee
Q 013602 258 GEEIAHTYNHIYG-LSLTGLRFFTVYGPWGR----------PDMAYFFFTRDILNR-KSIPIFES---PDHGTVARDFTY 322 (439)
Q Consensus 258 ~E~~~~~~~~~~g-i~~~ilrpg~v~G~~~~----------~~~~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~i~ 322 (439)
+|.+++.++.+++ ++++++||++||||+.. ....+..+....... ..+.++.. .+++++.++|+|
T Consensus 160 ~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 239 (341)
T 3enk_A 160 AEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIH 239 (341)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEE
T ss_pred HHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEE
Confidence 9999999988875 99999999999999542 123344444333322 33444410 016789999999
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChH
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANIS 402 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ 402 (439)
++|+|++++.+++..... ..+++||+++++++|+.|+++.+.+.+|.+.++...+ ....+.....+|++
T Consensus 240 v~Dva~a~~~~~~~~~~~----------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~d~~ 308 (341)
T 3enk_A 240 VVDLARGHIAALDALERR----------DASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVA-RRPGDVAECYANPA 308 (341)
T ss_dssp HHHHHHHHHHHHHHHHHH----------TSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEEC-CCTTCCSEECBCCH
T ss_pred HHHHHHHHHHHHHhhhcC----------CcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCC-CCCCCccccccCHH
Confidence 999999999999874321 1238999999999999999999999999887766554 34456667789999
Q ss_pred HHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 403 LAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 403 k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
|++++|||+|+++++|+|+++++||+++.+
T Consensus 309 k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 309 AAAETIGWKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp HHHHHHCCCCCCCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999998754
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-45 Score=359.07 Aligned_cols=316 Identities=29% Similarity=0.472 Sum_probs=259.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
+.+|+||||||+||||++++++|+++|++|++++|+................ ...++.++.+|++|.+++.++++++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 103 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV- 103 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC-
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC-
Confidence 5678999999999999999999999999999999965422111111111110 1358999999999999999999966
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|+|||+||........+++...+++|+.++.+++++|++.+.. +||++||.++|+.....++.|+++. .|.+.|+.+
T Consensus 104 -d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~E~~~~-~~~~~Y~~s 180 (352)
T 1sb8_A 104 -DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVEDTIG-KPLSPYAVT 180 (352)
T ss_dssp -SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhcCCCCCCCCCCCCCC-CCCChhHHH
Confidence 9999999976544455678889999999999999999998754 9999999999998777788888765 678999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
|+++|.+++.+++++|+++++|||+.||||+..+. ..+..++..+.++.++.++ ++++..++|+|++|+|+++
T Consensus 181 K~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~Dva~a~ 257 (352)
T 1sb8_A 181 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQAN 257 (352)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEe---CCCCceEeeEEHHHHHHHH
Confidence 99999999999888899999999999999987644 4566677778888877665 5778899999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHh---CCccccc--cccCCCCCCCCcccCChHHHH
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLL---KVKAKRN--IMKLPRNGDVPFTHANISLAQ 405 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~---g~~~~~~--~~~~~~~~~~~~~~~d~~k~~ 405 (439)
+.++...... .+++||+++++++|+.|+++.+.+.+ |.+.... +.+ ....+.....+|++|++
T Consensus 258 ~~~~~~~~~~-----------~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~k~~ 325 (352)
T 1sb8_A 258 LLAATAGLDA-----------RNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRD-FREGDVRHSLADISKAA 325 (352)
T ss_dssp HHHHTCCGGG-----------CSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEEC-CCTTCCSBCCBCCHHHH
T ss_pred HHHHhccccC-----------CCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecC-CCccchhhccCCHHHHH
Confidence 9988763221 23899999999999999999999999 8765532 222 22344556678999999
Q ss_pred HHcCCCccCcHHHHHHHHHHHHHHHc
Q 013602 406 RELGYKPTTDLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 406 ~~LG~~p~~~l~e~l~~~v~~~~~~~ 431 (439)
++|||+|+++++|+|+++++||+++.
T Consensus 326 ~~lG~~p~~~~~e~l~~~~~~~~~~~ 351 (352)
T 1sb8_A 326 KLLGYAPKYDVSAGVALAMPWYIMFL 351 (352)
T ss_dssp HHTCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998875
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=355.85 Aligned_cols=297 Identities=23% Similarity=0.332 Sum_probs=257.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|+||||||+||||++++++|+++|++|++++|+... . . . .+++++.+|++ .+++.++++++ |+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~--------~-~--~~~~~~~~Dl~-~~~~~~~~~~~--d~V 66 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN-K--------A-I--NDYEYRVSDYT-LEDLINQLNDV--DAV 66 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----------------CCEEEECCCC-HHHHHHHTTTC--SEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc-c--------c-C--CceEEEEcccc-HHHHHHhhcCC--CEE
Confidence 4799999999999999999999999999999996221 0 0 1 18999999999 99999999966 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
||+||..... ++...+++|+.++.+++++|++.+.. +||++||.++||.....++.|+++. .|.+.|+.+|+++
T Consensus 67 ih~a~~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~-r~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~~~ 140 (311)
T 3m2p_A 67 VHLAATRGSQ----GKISEFHDNEILTQNLYDACYENNIS-NIVYASTISAYSDETSLPWNEKELP-LPDLMYGVSKLAC 140 (311)
T ss_dssp EECCCCCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCCGGGCSBCTTSCC-CCSSHHHHHHHHH
T ss_pred EEccccCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCCCCCCCCCCCC-CCCchhHHHHHHH
Confidence 9999975442 67788999999999999999999854 9999999999998888888888866 7889999999999
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
|.+++++.++.|++++++||++||||+..+...+..++..+..+..+.++ ++++..++|+|++|+|++++.+++.+.
T Consensus 141 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~v~v~Dva~a~~~~~~~~~ 217 (311)
T 3m2p_A 141 EHIGNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLH---ANSVAKREFLYAKDAAKSVIYALKQEK 217 (311)
T ss_dssp HHHHHHHHHHSCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEES---SBCCCCEEEEEHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEe---cCCCeEEceEEHHHHHHHHHHHHhcCC
Confidence 99999999988999999999999999887667788888889999888776 578899999999999999999988654
Q ss_pred hccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCccCcHHH
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQT 418 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e 418 (439)
.+++||+++++++|+.|+++.+.+.+|.+..+...+.+.........+|++|+++.|||+|++++++
T Consensus 218 -------------~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~ 284 (311)
T 3m2p_A 218 -------------VSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFAT 284 (311)
T ss_dssp -------------CCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHH
T ss_pred -------------CCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHH
Confidence 1289999999999999999999999998877766655455666778899999999999999999999
Q ss_pred HHHHHHHHHHHHcc
Q 013602 419 GLKKFVRWYLSYYA 432 (439)
Q Consensus 419 ~l~~~v~~~~~~~~ 432 (439)
+|+++++||+++.+
T Consensus 285 ~l~~~~~~~~~~~~ 298 (311)
T 3m2p_A 285 AVEEIHLLMRGLDD 298 (311)
T ss_dssp HHHHHHHHHCC---
T ss_pred HHHHHHHHHHhccc
Confidence 99999999987644
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-45 Score=354.10 Aligned_cols=304 Identities=24% Similarity=0.360 Sum_probs=253.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
...|+||||||+||||++++++|+++|++|++++|+... .. + ++.++.+|++|.+++.+++++.++|
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~---------l---~~~~~~~Dl~d~~~~~~~~~~~~~d 76 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL---------P---NVEMISLDIMDSQRVKKVISDIKPD 76 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC---------T---TEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc---------c---eeeEEECCCCCHHHHHHHHHhcCCC
Confidence 356899999999999999999999999999999996543 11 1 6889999999999999999886679
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCC--CCCCCCCCCCCCCCCChHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLN--TKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~--~~~~~~e~~~~~~p~~~Y~~s 254 (439)
+||||||......+.+++...+++|+.|+.+++++|++.+..++||++||.++||.. ...+++|+++. .|.+.|+.+
T Consensus 77 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~-~~~~~Y~~s 155 (321)
T 2pk3_A 77 YIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQL-RPMSPYGVS 155 (321)
T ss_dssp EEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCC-BCCSHHHHH
T ss_pred EEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCC-CCCCccHHH
Confidence 999999986655566788899999999999999999876324599999999999976 56678888765 678999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHc---C--CCCceeecCCCCcceeeeeeHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILN---R--KSIPIFESPDHGTVARDFTYIDDIVKG 329 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~---g--~~~~~~~~~~~~~~~~~~i~v~Dva~a 329 (439)
|+++|.+++.+++++|++++++||++||||+......+..++..+.. | .++..+ +++...++|+|++|+|++
T Consensus 156 K~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~v~v~Dva~a 232 (321)
T 2pk3_A 156 KASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKV---GNLEAVRDFTDVRDIVQA 232 (321)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEE---SCSSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEe---CCCCcEEeeEEHHHHHHH
Confidence 99999999999888899999999999999988765556666666665 6 455555 467889999999999999
Q ss_pred HHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccC-CCCCCCCcccCChHHHHHHc
Q 013602 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL-PRNGDVPFTHANISLAQREL 408 (439)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~k~~~~L 408 (439)
++.+++.+. .+++||+++++++|+.|+++.+.+.+|.+.++...|. ....+.....+|++|+++.|
T Consensus 233 ~~~~~~~~~-------------~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~l 299 (321)
T 2pk3_A 233 YWLLSQYGK-------------TGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDST 299 (321)
T ss_dssp HHHHHHHCC-------------TTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHHH
T ss_pred HHHHHhCCC-------------CCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHHc
Confidence 999998652 1279999999999999999999999998765544431 12334456778999999999
Q ss_pred CCCccCcHHHHHHHHHHHHHHH
Q 013602 409 GYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 409 G~~p~~~l~e~l~~~v~~~~~~ 430 (439)
||+|+++++|+|+++++||+++
T Consensus 300 G~~p~~~~~e~l~~~~~~~~~~ 321 (321)
T 2pk3_A 300 GWKPRIPLEKSLFEILQSYRQA 321 (321)
T ss_dssp CCCCCSCHHHHHHHHHHHHHTC
T ss_pred CCCcCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999753
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-45 Score=355.44 Aligned_cols=310 Identities=28% Similarity=0.446 Sum_probs=252.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.+|+||||||+||||++++++|+++| ++|++++|......... ........++.++.+|++|.+++.+++.++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 76 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPAN---LKDLEDDPRYTFVKGDVADYELVKELVRKV-- 76 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGG---GTTTTTCTTEEEEECCTTCHHHHHHHHHTC--
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhH---HhhhccCCceEEEEcCCCCHHHHHHHhhCC--
Confidence 45789999999999999999999997 89999998542211110 011112357899999999999999999665
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK 255 (439)
|+||||||......+.+++...+++|+.|+.+++++|.+.+..++||++||.++||.....+++|+++. .+.+.|+.+|
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~sK 155 (336)
T 2hun_A 77 DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRL-MPSSPYSATK 155 (336)
T ss_dssp SEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCC-CCCSHHHHHH
T ss_pred CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCC-CCCCccHHHH
Confidence 999999998654445567889999999999999999998864459999999999997766678887765 6788999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHh
Q 013602 256 KAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335 (439)
Q Consensus 256 ~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 335 (439)
+++|.++++++.++|++++++||+.||||+..+...+..++..+..+..++++ +++...++|+|++|+|++++.+++
T Consensus 156 ~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~~~~~~~~ 232 (336)
T 2hun_A 156 AASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIY---GTGKNVRDWLYVEDHVRAIELVLL 232 (336)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEE---TC---CEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEe---CCCCceeeeEEHHHHHHHHHHHHh
Confidence 99999999999888999999999999999876556667778888888887776 577888999999999999999987
Q ss_pred hchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccc-cccccCCCCCCCCcccCChHHHHHHcCCCccC
Q 013602 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK-RNIMKLPRNGDVPFTHANISLAQRELGYKPTT 414 (439)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~ 414 (439)
... .+++||++++.++|+.|+++.+.+.+|.+.+ +...+ ...+......+|++|++++|||+|.+
T Consensus 233 ~~~-------------~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lG~~p~~ 298 (336)
T 2hun_A 233 KGE-------------SREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVE-DRPGHDLRYSLDSWKITRDLKWRPKY 298 (336)
T ss_dssp HCC-------------TTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEEC-CCTTCCCCCCBCCHHHHHHHCCCCSS
T ss_pred CCC-------------CCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccC-CCCCchhhhcCCHHHHHHHhCCCCCC
Confidence 532 1279999999999999999999999997643 22222 22333344568999999999999999
Q ss_pred cHHHHHHHHHHHHHHH
Q 013602 415 DLQTGLKKFVRWYLSY 430 (439)
Q Consensus 415 ~l~e~l~~~v~~~~~~ 430 (439)
+++|+|+++++||+++
T Consensus 299 ~~~~~l~~~~~~~~~~ 314 (336)
T 2hun_A 299 TFDEGIKKTIDWYLKN 314 (336)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999876
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=354.89 Aligned_cols=303 Identities=26% Similarity=0.414 Sum_probs=251.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+||||||+||||++++++|+++|++|++++|+....... ...+++++.+|++|.+ +.++++. |+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~~Dl~d~~-~~~~~~~---d~vi 67 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREF---------VNPSAELHVRDLKDYS-WGAGIKG---DVVF 67 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGG---------SCTTSEEECCCTTSTT-TTTTCCC---SEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhh---------cCCCceEEECccccHH-HHhhcCC---CEEE
Confidence 6899999999999999999999999999999965432211 1468999999999999 8888876 9999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+||.........++...+++|+.|+.++++++++.+.. +||++||.++||.....++.|+.+. .|.+.|+.+|+++|
T Consensus 68 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~vyg~~~~~~~~e~~~~-~p~~~Y~~sK~~~e 145 (312)
T 3ko8_A 68 HFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGE 145 (312)
T ss_dssp ECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCcHHHhCCCCCCCCCCCCCC-CCCChHHHHHHHHH
Confidence 999976666677888999999999999999999998854 9999999999998888888888766 78899999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCC-CCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRK-SIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
.+++.+++++|++++++||++||||+... ..+..++..+..+. .+..+ +++...++|+|++|+|++++.+++.+.
T Consensus 146 ~~~~~~~~~~g~~~~~lrp~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~~~~~~ 221 (312)
T 3ko8_A 146 VMCATYARLFGVRCLAVRYANVVGPRLRH-GVIYDFIMKLRRNPNVLEVL---GDGTQRKSYLYVRDAVEATLAAWKKFE 221 (312)
T ss_dssp HHHHHHHHHHCCEEEEEEECEEECTTCCS-SHHHHHHHHHHHCTTEEEEC-------CEECEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeeccccCcCCCC-ChHHHHHHHHHhCCCCeEEc---CCCCeEEeeEEHHHHHHHHHHHHHhcc
Confidence 99999999899999999999999998764 44556666666663 44444 578899999999999999999998732
Q ss_pred hccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCC-----CCCCCCcccCChHHHHHHcCCCcc
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP-----RNGDVPFTHANISLAQRELGYKPT 413 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~-----~~~~~~~~~~d~~k~~~~LG~~p~ 413 (439)
... ..+++||+++++++|+.|+++.+.+.+|.+..+...+.. ...+.....+|++|+++.|||+|+
T Consensus 222 ~~~---------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 292 (312)
T 3ko8_A 222 EMD---------APFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPT 292 (312)
T ss_dssp HSC---------CSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCCCCS
T ss_pred ccC---------CCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCC
Confidence 111 234899999999999999999999999988776654432 234455678999999999999999
Q ss_pred CcHHHHHHHHHHHHHHH
Q 013602 414 TDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 414 ~~l~e~l~~~v~~~~~~ 430 (439)
++++|+|+++++||+++
T Consensus 293 ~~~~~~l~~~~~~~~~~ 309 (312)
T 3ko8_A 293 MTSAEAVKKTAEDLAKE 309 (312)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999876
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=353.92 Aligned_cols=304 Identities=26% Similarity=0.413 Sum_probs=245.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
||+||||||+||||++++++|+++| .|+++++...... .....++.++.+|++| +++.++++++ |+|
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~---------~~~~~~~~~~~~Dl~~-~~~~~~~~~~--d~v 67 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNE---------EFVNEAARLVKADLAA-DDIKDYLKGA--EEV 67 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCG---------GGSCTTEEEECCCTTT-SCCHHHHTTC--SEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCCh---------hhcCCCcEEEECcCCh-HHHHHHhcCC--CEE
Confidence 4689999999999999999999999 5555554332111 1114578999999999 9999999866 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
||+|+......+.+++...+++|+.|+.++++++++.+.. +||++||.++||.....++.|+.+. .|.+.|+.+|.++
T Consensus 68 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~sK~~~ 145 (313)
T 3ehe_A 68 WHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTSTVYGEAKVIPTPEDYPT-HPISLYGASKLAC 145 (313)
T ss_dssp EECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHH
T ss_pred EECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCchHHhCcCCCCCCCCCCCC-CCCCHHHHHHHHH
Confidence 9999976556667888999999999999999999998854 9999999999998888888887765 6889999999999
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcC-CCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNR-KSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
|.+++.+++++|++++++||++||||+... ..+..++..+..+ ..+..+ +++.+.++|+|++|+|++++.+++..
T Consensus 146 e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~~~~~ 221 (313)
T 3ehe_A 146 EALIESYCHTFDMQAWIYRFANVIGRRSTH-GVIYDFIMKLKRNPEELEIL---GNGEQNKSYIYISDCVDAMLFGLRGD 221 (313)
T ss_dssp HHHHHHHHHHTTCEEEEEECSCEESTTCCC-SHHHHHHHHHHHCTTEEEES---TTSCCEECCEEHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCEEEEeeccccCcCCCc-ChHHHHHHHHHcCCCceEEe---CCCCeEEeEEEHHHHHHHHHHHhccC
Confidence 999999999999999999999999998764 4555666666666 444454 67889999999999999999998822
Q ss_pred hhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCC--CCCCCCcccCChHHHHHHcCCCccCc
Q 013602 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP--RNGDVPFTHANISLAQRELGYKPTTD 415 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~--~~~~~~~~~~d~~k~~~~LG~~p~~~ 415 (439)
. .+++||+++++++|+.|+++.+.+.+|.+..+...+.+ ...+.....+|++|+ ++|||+|+++
T Consensus 222 ~-------------~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~-~~lG~~p~~~ 287 (313)
T 3ehe_A 222 E-------------RVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKL-KRLGWKPRYN 287 (313)
T ss_dssp S-------------SEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHH-HHHTCCCSCC
T ss_pred C-------------CCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHH-HHcCCCCCCC
Confidence 2 23899999999999999999999999987766554322 234455677899999 5699999999
Q ss_pred HHHHHHHHHHHHHHHccCCC
Q 013602 416 LQTGLKKFVRWYLSYYAGGK 435 (439)
Q Consensus 416 l~e~l~~~v~~~~~~~~~~~ 435 (439)
++|+|+++++||+++.+...
T Consensus 288 ~~e~l~~~~~~~~~~~~~~~ 307 (313)
T 3ehe_A 288 SEEAVRMAVRDLVEDLDEEG 307 (313)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhCccccc
Confidence 99999999999999876543
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=356.42 Aligned_cols=321 Identities=21% Similarity=0.266 Sum_probs=257.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+.+|+||||||+||||++++++|+++|++|++++|+.......... .....++.++.+|++|.+++.+++++.++|
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 82 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFET----ARVADGMQSEIGDIRDQNKLLESIREFQPE 82 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHH----TTTTTTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHh----hccCCceEEEEccccCHHHHHHHHHhcCCC
Confidence 5678999999999999999999999999999999976543322111 112357899999999999999999986779
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC-CCCCCCCCCCCCCChHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTK-VPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~-~~~~e~~~~~~p~~~Y~~sK 255 (439)
+||||||......+..++...+++|+.|+.+++++|++.+..++||++||.++||.... .++.|+++. .+.+.|+.+|
T Consensus 83 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~-~~~~~Y~~sK 161 (357)
T 1rkx_A 83 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAM-GGYDPYSNSK 161 (357)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCB-CCSSHHHHHH
T ss_pred EEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCC-CCCCccHHHH
Confidence 99999997544445677889999999999999999998763459999999999997553 356666554 5788999999
Q ss_pred HHHHHHHHHHHhHh---------CCcEEEEeeccccCCCCCC-CChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHH
Q 013602 256 KAGEEIAHTYNHIY---------GLSLTGLRFFTVYGPWGRP-DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDD 325 (439)
Q Consensus 256 ~a~E~~~~~~~~~~---------gi~~~ilrpg~v~G~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~D 325 (439)
+++|.+++.++.++ |+++++|||+.||||+... ...+..++..+.++..+.++ +++..++|+|++|
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~v~v~D 237 (357)
T 1rkx_A 162 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIR----NPHAIRPWQHVLE 237 (357)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECS----CTTCEECCEETHH
T ss_pred HHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEEC----CCCCeeccEeHHH
Confidence 99999999998765 9999999999999998643 35667788888888876553 5678899999999
Q ss_pred HHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC--CcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHH
Q 013602 326 IVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT--SPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISL 403 (439)
Q Consensus 326 va~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 403 (439)
+|++++.+++...... ...+++||++++ +++|+.|+++.+.+.+|.+..+...+.+...+.....+|++|
T Consensus 238 va~a~~~~~~~~~~~~--------~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 309 (357)
T 1rkx_A 238 PLSGYLLLAQKLYTDG--------AEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSK 309 (357)
T ss_dssp HHHHHHHHHHHHHHTC--------GGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHH
T ss_pred HHHHHHHHHHhhhhcC--------CCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCCHHH
Confidence 9999999987532100 012379999984 689999999999999998766554433333445567799999
Q ss_pred HHHHcCCCccCcHHHHHHHHHHHHHHHccCC
Q 013602 404 AQRELGYKPTTDLQTGLKKFVRWYLSYYAGG 434 (439)
Q Consensus 404 ~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 434 (439)
++++|||+|.++++|+|+++++||+++....
T Consensus 310 ~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~ 340 (357)
T 1rkx_A 310 AKMQLGWHPRWNLNTTLEYIVGWHKNWLSGT 340 (357)
T ss_dssp HHHHHCCCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCcCCcHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999887654
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=350.94 Aligned_cols=316 Identities=22% Similarity=0.215 Sum_probs=256.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+|+||||||+||||++++++|+++|++|++++|+........ ........++.++.+|++|.+++.++++++++|
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 88 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWR---LRELGIEGDIQYEDGDMADACSVQRAVIKAQPQ 88 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHH---HHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccc---hhhccccCceEEEECCCCCHHHHHHHHHHcCCC
Confidence 35689999999999999999999999999999999765432111 111112357899999999999999999987889
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~ 256 (439)
+|||+||......+..++...+++|+.|+.+++++|++.+..++||++||.++||.....+++|+++. .|.+.|+.+|+
T Consensus 89 ~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~~sK~ 167 (335)
T 1rpn_A 89 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPF-YPRSPYGVAKL 167 (335)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHH
T ss_pred EEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCC-CCCChhHHHHH
Confidence 99999997655455678889999999999999999999875359999999999998777788888766 67889999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCC---hHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHH
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDM---AYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAA 333 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 333 (439)
++|.+++.++++++++++++||+++|||+..... .+..++..+..+....... ++++..++|+|++|+|++++.+
T Consensus 168 ~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~--g~g~~~~~~i~v~Dva~a~~~~ 245 (335)
T 1rpn_A 168 YGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRL--GNVDAKRDWGFAGDYVEAMWLM 245 (335)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE--SCTTCEEECEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEe--CCCcceeceEEHHHHHHHHHHH
Confidence 9999999999888999999999999999865433 2344556666776543321 5778999999999999999999
Q ss_pred HhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccc--ccccC-CCCCCCCcccCChHHHHHHcCC
Q 013602 334 LDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR--NIMKL-PRNGDVPFTHANISLAQRELGY 410 (439)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~--~~~~~-~~~~~~~~~~~d~~k~~~~LG~ 410 (439)
++.+.. ++||+++++++|+.|+++.+.+.+|.+... ...+. .+..+.....+|++|++++|||
T Consensus 246 ~~~~~~--------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~ 311 (335)
T 1rpn_A 246 LQQDKA--------------DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGW 311 (335)
T ss_dssp HHSSSC--------------CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCC
T ss_pred HhcCCC--------------CEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcCC
Confidence 976431 689999999999999999999999976431 11111 1233445567899999999999
Q ss_pred CccCcHHHHHHHHHHHHHHHcc
Q 013602 411 KPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 411 ~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
+|.++++|+|+++++||+++.+
T Consensus 312 ~p~~~l~e~l~~~~~~~~~~~~ 333 (335)
T 1rpn_A 312 KPRTSLDELIRMMVEADLRRVS 333 (335)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998864
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=364.91 Aligned_cols=311 Identities=22% Similarity=0.340 Sum_probs=258.8
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC-CHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN-DMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~~~~~~~~~ 173 (439)
.+.+|+||||||+||||++|+++|+++ |++|++++|+.+.... .....+++++.+|++ |.+++.++++++
T Consensus 21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~v~~~~~Dl~~d~~~~~~~~~~~ 92 (372)
T 3slg_A 21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGD--------LVKHERMHFFEGDITINKEWVEYHVKKC 92 (372)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGG--------GGGSTTEEEEECCTTTCHHHHHHHHHHC
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhh--------hccCCCeEEEeCccCCCHHHHHHHhccC
Confidence 367899999999999999999999998 9999999996543211 122468999999999 999999999977
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC------CC
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD------QP 247 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~------~p 247 (439)
|+|||+||.........++...+++|+.++.+++++|++.+ . +||++||.++||.....++.|++.+. .|
T Consensus 93 --d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~-~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p 168 (372)
T 3slg_A 93 --DVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPSTSEVYGMCADEQFDPDASALTYGPINKP 168 (372)
T ss_dssp --SEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-C-EEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCT
T ss_pred --CEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-C-cEEEeCcHHHhCCCCCCCCCccccccccCCCCCC
Confidence 99999999876665667888999999999999999999998 4 99999999999988777888877431 45
Q ss_pred CChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC--------CChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 248 ASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP--------DMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
.+.|+.+|+++|.+++++.++ |+++++|||++||||+... ...+..++..+.++..+.++ ++++..++
T Consensus 169 ~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~ 244 (372)
T 3slg_A 169 RWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLV---DGGSQKRA 244 (372)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEG---GGGCCEEE
T ss_pred CCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEe---CCCceEEE
Confidence 678999999999999999888 9999999999999998652 34677888888899888776 56789999
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecC-CCcccHHHHHHHHHHHhCCccccccccCC---------
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN-TSPVPVSDLVSILERLLKVKAKRNIMKLP--------- 389 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~t~~el~~~l~~~~g~~~~~~~~~~~--------- 389 (439)
|+|++|+|++++.+++.+... ..+++||+++ ++++|+.|+++.+.+.+|.+..+...+..
T Consensus 245 ~i~v~Dva~a~~~~~~~~~~~----------~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 314 (372)
T 3slg_A 245 FTYVDDGISALMKIIENSNGV----------ATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSG 314 (372)
T ss_dssp CEEHHHHHHHHHHHHHCGGGT----------TTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC---
T ss_pred EEEHHHHHHHHHHHHhcccCc----------CCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeecccc
Confidence 999999999999999876521 1238999999 48999999999999999977654433211
Q ss_pred -----CCCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 390 -----RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 390 -----~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
...+.....+|++|+++.|||+|+++++|+|+++++||+++..
T Consensus 315 ~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 362 (372)
T 3slg_A 315 AYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVA 362 (372)
T ss_dssp ----------CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTCHH
T ss_pred ccccCCccccceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0124455678999999999999999999999999999987654
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=352.35 Aligned_cols=315 Identities=22% Similarity=0.350 Sum_probs=250.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
||+||||||+||||++++++|+++|++|++++|+..... ...........++.++.+|++|.+++.+++++.++|+|
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA---TDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSC 77 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTH---HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCc---hhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEE
Confidence 368999999999999999999999999999998542211 11111111234689999999999999999998555999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCC----------------CCCCC
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVP----------------FSEKD 242 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~----------------~~e~~ 242 (439)
|||||........+++...+++|+.|+.+++++|++.+..++||++||.++||.....+ ++|+.
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~ 157 (347)
T 1orr_A 78 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDEST 157 (347)
T ss_dssp EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTS
T ss_pred EECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccC
Confidence 99999765444556788999999999999999999988545999999999998654433 44444
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC---ChHHHHHHHHHcCC-----CCceeecCCCC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD---MAYFFFTRDILNRK-----SIPIFESPDHG 314 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~---~~~~~~~~~~~~g~-----~~~~~~~~~~~ 314 (439)
+. .|.+.|+.+|+++|.++++++.++|+++++|||+.||||+.... ..+..++..++.+. ++..+ +++
T Consensus 158 ~~-~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g 233 (347)
T 1orr_A 158 QL-DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTIS---GNG 233 (347)
T ss_dssp CC-CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEE---SSS
T ss_pred CC-CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEe---cCC
Confidence 43 57789999999999999999988899999999999999976432 24555666666655 45454 578
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC--cccHHHHHHHHHHHhCCccccccccCCCCC
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS--PVPVSDLVSILERLLKVKAKRNIMKLPRNG 392 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~t~~el~~~l~~~~g~~~~~~~~~~~~~~ 392 (439)
++.++|+|++|+|++++.+++..... .|++||++++. ++|+.|+++.+.+.+|.+.++...+ .+..
T Consensus 234 ~~~~~~i~v~Dva~a~~~~~~~~~~~-----------~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~~~~ 301 (347)
T 1orr_A 234 KQVRDVLHAEDMISLYFTALANVSKI-----------RGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP-VRES 301 (347)
T ss_dssp CCEEECEEHHHHHHHHHHHHHTHHHH-----------TTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEEC-CCSS
T ss_pred cceEeeEEHHHHHHHHHHHHhccccC-----------CCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCC-CCCC
Confidence 89999999999999999998753222 23799999986 5999999999999999877665554 2334
Q ss_pred CCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 393 DVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 393 ~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
+.....+|++|+++.|||+|.++++|+|+++++|++++++
T Consensus 302 ~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 341 (347)
T 1orr_A 302 DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSILE 341 (347)
T ss_dssp CCSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHC--
T ss_pred CcceeecCHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHH
Confidence 4556778999999999999999999999999999998764
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=352.96 Aligned_cols=300 Identities=17% Similarity=0.231 Sum_probs=252.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+.+|+|||||||||||++++++|+++|+ +. ......+.++.+|++|.+++.+++++.++|
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~--------------~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d 63 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LP--------------GEDWVFVSSKDADLTDTAQTRALFEKVQPT 63 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC------CT--------------TCEEEECCTTTCCTTSHHHHHHHHHHSCCS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC------cc--------------cccccccCceecccCCHHHHHHHHhhcCCC
Confidence 6789999999999999999999999998 10 001224555689999999999999987779
Q ss_pred EEEEcccccCc-cccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC----CCCCCCC-h
Q 013602 177 HVMHLAAQAGV-RYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKD----RTDQPAS-L 250 (439)
Q Consensus 177 ~Vi~~Ag~~~~-~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~----~~~~p~~-~ 250 (439)
+|||+||.... ....+++...+++|+.|+.+++++|++.+.. +||++||.++||.....++.|++ ++ .|.. +
T Consensus 64 ~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~~~~~-~p~~~~ 141 (319)
T 4b8w_A 64 HVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCLSTCIFPDKTTYPIDETMIHNGPP-HNSNFG 141 (319)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGSCSSCCSSBCGGGGGBSCC-CSSSHH
T ss_pred EEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEcchhhcCCCCCCCccccccccCCC-CCCcch
Confidence 99999998542 3456788899999999999999999999854 99999999999988888888886 33 4444 6
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC----ChHHHHHHH----HHcCCCCceeecCCCCcceeeeee
Q 013602 251 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD----MAYFFFTRD----ILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 251 Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
|+.+|+++|.+++.+.+++|++++++||++||||+..+. ..+..++.. +..+..+.++ +++...++|+|
T Consensus 142 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~ 218 (319)
T 4b8w_A 142 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVW---GTGNPRRQFIY 218 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEE---SCSCCEECEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEe---CCCCeeEEEEe
Confidence 999999999999999988899999999999999987532 345555655 7788888877 57889999999
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChH
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANIS 402 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ 402 (439)
++|+|++++.+++.+... .+++||+++++++|+.|+++.+.+.+|.+.++...+. ...+.....+|++
T Consensus 219 v~Dva~a~~~~~~~~~~~-----------~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~ 286 (319)
T 4b8w_A 219 SLDLAQLFIWVLREYNEV-----------EPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTT-KSDGQFKKTASNS 286 (319)
T ss_dssp HHHHHHHHHHHHHHCCCS-----------SCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETT-SCCCCSCCCBCCH
T ss_pred HHHHHHHHHHHHhccccC-----------CceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCC-CCcCcccccCCHH
Confidence 999999999999875432 2379999999999999999999999998877666553 3344455679999
Q ss_pred HHHHHcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 403 LAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 403 k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
|+++.|||.|.++++|+|+++++||+++.+.
T Consensus 287 k~~~~lg~~p~~~~~~~l~~~~~~~~~~~~~ 317 (319)
T 4b8w_A 287 KLRTYLPDFRFTPFKQAVKETCAWFTDNYEQ 317 (319)
T ss_dssp HHHHHCTTCCCCCHHHHHHHHHHHHHHSCSS
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998764
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-45 Score=357.11 Aligned_cols=298 Identities=26% Similarity=0.271 Sum_probs=251.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
.++|+||||||+||||++|+++|+++|++|++++|.... .++.++.+|++|.+++.++++++ |
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~---------------~~~~~~~~Dl~d~~~~~~~~~~~--d 79 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG---------------TGGEEVVGSLEDGQALSDAIMGV--S 79 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS---------------SCCSEEESCTTCHHHHHHHHTTC--S
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC---------------CCccEEecCcCCHHHHHHHHhCC--C
Confidence 577899999999999999999999999999999995432 57899999999999999999966 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC--CCCCCCCCCCCCCCCCChHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGL--NTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~--~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
+|||+|+..... .......+++|+.|+.+++++|++.+.. +||++||.++||. ....++.|+++. .|.+.|+.+
T Consensus 80 ~vih~A~~~~~~--~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~~~E~~~~-~~~~~Y~~s 155 (347)
T 4id9_A 80 AVLHLGAFMSWA--PADRDRMFAVNVEGTRRLLDAASAAGVR-RFVFASSGEVYPENRPEFLPVTEDHPL-CPNSPYGLT 155 (347)
T ss_dssp EEEECCCCCCSS--GGGHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGTTTTSCSSSSBCTTSCC-CCCSHHHHH
T ss_pred EEEECCcccCcc--hhhHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHHhCCCCCCCCCcCCCCCC-CCCChHHHH
Confidence 999999975432 2334789999999999999999998854 9999999999997 556678888766 688999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeecccc-------------CCCCCC-----------CChHHHHHHHHHcCCCCceeec
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVY-------------GPWGRP-----------DMAYFFFTRDILNRKSIPIFES 310 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~-------------G~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~ 310 (439)
|+++|.+++.+.+++|+++++|||++|| ||+... ...+..++..+..+.++.++
T Consensus 156 K~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (347)
T 4id9_A 156 KLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHIL-- 233 (347)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEE--
T ss_pred HHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEe--
Confidence 9999999999998889999999999999 876432 34566777788888887777
Q ss_pred CCCCcceeee----eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccc
Q 013602 311 PDHGTVARDF----TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM 386 (439)
Q Consensus 311 ~~~~~~~~~~----i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~ 386 (439)
+++...++| +|++|+|++++.+++.+.. .+++|||++++++|+.|+++.+.+.+|.+..+...
T Consensus 234 -g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~------------~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~ 300 (347)
T 4id9_A 234 -ARNENGRPFRMHITDTRDMVAGILLALDHPEA------------AGGTFNLGADEPADFAALLPKIAALTGLPIVTVDF 300 (347)
T ss_dssp -EECTTCCBCEECEEEHHHHHHHHHHHHHCGGG------------TTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEEC
T ss_pred -CCCCcccCCccCcEeHHHHHHHHHHHhcCccc------------CCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeC
Confidence 467788899 9999999999999987642 23899999999999999999999999987766544
Q ss_pred cCCCCCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHccCC
Q 013602 387 KLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGG 434 (439)
Q Consensus 387 ~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 434 (439)
+... ....+|++|++++|||+|.++++|+|+++++||+++..+.
T Consensus 301 p~~~----~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~~ 344 (347)
T 4id9_A 301 PGDG----VYYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRLAKE 344 (347)
T ss_dssp SSCC----CBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--
T ss_pred CCcc----cccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 3221 2567899999999999999999999999999999987654
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-44 Score=348.33 Aligned_cols=307 Identities=26% Similarity=0.455 Sum_probs=253.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhC---C---CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRR---G---DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~---G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
|+||||||+||||++++++|+++ | ++|++++|.......... .......++.++.+|++|.+++.+++.++
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANL---APVDADPRLRFVHGDIRDAGLLARELRGV 77 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGG---GGGTTCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhh---hhcccCCCeEEEEcCCCCHHHHHHHhcCC
Confidence 57999999999999999999997 8 999999996432211100 01112357999999999999999999766
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAA 253 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~ 253 (439)
|+|||+||......+..+++..+++|+.|+.+++++|++.+. ++||++||.++||.....+++|+++. .|.+.|+.
T Consensus 78 --d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~-~~~v~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~ 153 (337)
T 1r6d_A 78 --DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGV-GRVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAA 153 (337)
T ss_dssp --CEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTC-CEEEEEEEGGGGCCCSSSCBCTTSCC-CCCSHHHH
T ss_pred --CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecchHHhCCCCCCCCCCCCCC-CCCCchHH
Confidence 999999997654445567888999999999999999999885 49999999999997766677787765 67899999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHH
Q 013602 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAA 333 (439)
Q Consensus 254 sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 333 (439)
+|+++|.+++.+++++|++++++||++||||+..+...+..++..+..+..+.++ ++++..++|+|++|+|++++.+
T Consensus 154 sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~ 230 (337)
T 1r6d_A 154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLY---GDGANVREWVHTDDHCRGIALV 230 (337)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEE---TTSCCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEe---CCCCeeEeeEeHHHHHHHHHHH
Confidence 9999999999999888999999999999999876556677778888888887776 5778899999999999999999
Q ss_pred HhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccc-cccccCCCCCCCCcccCChHHHHHHcCCCc
Q 013602 334 LDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK-RNIMKLPRNGDVPFTHANISLAQRELGYKP 412 (439)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p 412 (439)
++... .+++||+++++++|+.|+++.+.+.+|.+.+ +.+.+ ...+......+|++|++++|||+|
T Consensus 231 ~~~~~-------------~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lG~~p 296 (337)
T 1r6d_A 231 LAGGR-------------AGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVA-DRKGHDLRYSLDGGKIERELGYRP 296 (337)
T ss_dssp HHHCC-------------TTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEEC-CCTTCCCBCCBCCHHHHHHHCCCC
T ss_pred HhCCC-------------CCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecC-CCCCCcceeecCHHHHHHHcCCCC
Confidence 87542 1279999999999999999999999997653 22222 222333445689999999999999
Q ss_pred cCcHHHHHHHHHHHHHHH
Q 013602 413 TTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 413 ~~~l~e~l~~~v~~~~~~ 430 (439)
.++++|+|+++++||+++
T Consensus 297 ~~~~~e~l~~~~~~~~~~ 314 (337)
T 1r6d_A 297 QVSFADGLARTVRWYREN 314 (337)
T ss_dssp CSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999999875
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-44 Score=347.59 Aligned_cols=313 Identities=25% Similarity=0.408 Sum_probs=252.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
||+||||||+||||++++++|+++|++|++++|...... +.. ..+++++.+|++|.+++.++++..++|+|
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--------~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~d~v 71 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE--------DAI-TEGAKFYNGDLRDKAFLRDVFTQENIEAV 71 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG--------GGS-CTTSEEEECCTTCHHHHHHHHHHSCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch--------hhc-CCCcEEEECCCCCHHHHHHHHhhcCCCEE
Confidence 478999999999999999999999999999998554221 111 13789999999999999999985556999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
||+||......+.+++...+++|+.++.+++++|++.+.. +||++||.++|+.....+++|+++. .|.+.|+.+|+++
T Consensus 72 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~~~~~~~~~E~~~~-~~~~~Y~~sK~~~ 149 (330)
T 2c20_A 72 MHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSSTAATYGEVDVDLITEETMT-NPTNTYGETKLAI 149 (330)
T ss_dssp EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGGCSCSSSSBCTTSCC-CCSSHHHHHHHHH
T ss_pred EECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeCCceeeCCCCCCCCCcCCCC-CCCChHHHHHHHH
Confidence 9999976544455678889999999999999999998754 9999999999998777788888776 6789999999999
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCC---------CCChHHHHHHHHHcC-CCCceeec---CCCCcceeeeeeHHH
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGR---------PDMAYFFFTRDILNR-KSIPIFES---PDHGTVARDFTYIDD 325 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~---------~~~~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~i~v~D 325 (439)
|.+++.+++++|++++++||++||||+.. ...++..+......+ ..+.++.. ..+++..++|+|++|
T Consensus 150 e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~D 229 (330)
T 2c20_A 150 EKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVED 229 (330)
T ss_dssp HHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHH
T ss_pred HHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHH
Confidence 99999998888999999999999999631 123444444444322 34444420 015678999999999
Q ss_pred HHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHH
Q 013602 326 IVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQ 405 (439)
Q Consensus 326 va~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~ 405 (439)
+|++++.+++.+.... .+++||+++++++|+.|+++.+.+.+|.+.++...+. ..++.....+|++|++
T Consensus 230 va~a~~~~~~~~~~~~----------~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~ 298 (330)
T 2c20_A 230 LVAAHFLGLKDLQNGG----------ESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPR-RAGDPARLVASSQKAK 298 (330)
T ss_dssp HHHHHHHHHHHHHTTC----------CCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECC-CSSCCSEECBCCHHHH
T ss_pred HHHHHHHHHhccccCC----------CCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCC-CCCcccccccCHHHHH
Confidence 9999999998764310 1389999999999999999999999998766554442 2334456778999999
Q ss_pred HHcCCCccC-cHHHHHHHHHHHHHHHccC
Q 013602 406 RELGYKPTT-DLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 406 ~~LG~~p~~-~l~e~l~~~v~~~~~~~~~ 433 (439)
++|||+|++ +++|+|+++++||+++.+.
T Consensus 299 ~~lG~~p~~~~l~~~l~~~~~~~~~~~~~ 327 (330)
T 2c20_A 299 EKLGWDPRYVNVKTIIEHAWNWHQKQPNG 327 (330)
T ss_dssp HHHCCCCSCCCHHHHHHHHHHHHHHCSSC
T ss_pred HHhCCCCccCCHHHHHHHHHHHHHHhhhc
Confidence 999999998 9999999999999987653
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=348.35 Aligned_cols=319 Identities=30% Similarity=0.447 Sum_probs=255.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCC------CChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDY------YDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+|+||||||+||||++++++|+++|++|++++|.... ...... ........++.++.+|++|.+++.++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~--~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLR--RVQELTGRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHH--HHHHHHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHH--HHHhccCCceEEEECCCCCHHHHHHHHHh
Confidence 4799999999999999999999999999999986543 111111 11111235789999999999999999986
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC-CChH
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP-ASLY 251 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p-~~~Y 251 (439)
.++|+|||+||........+++...+++|+.|+.++++++++.+. ++||++||.++||.....+++|+++. .| .+.|
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~iv~~SS~~~~g~~~~~~~~E~~~~-~p~~~~Y 157 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV-KNLVFSSSATVYGNPQYLPLDEAHPT-GGCTNPY 157 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSSHH
T ss_pred cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCC-CEEEEECcHHHhCCCCCCCcCCCCCC-CCCCCch
Confidence 566999999997654445567888999999999999999998875 49999999999998777788888765 45 7899
Q ss_pred HHHHHHHHHHHHHHHhHhC--CcEEEEeeccccCCCC------C----CCChHHHHHHHHH-cCCCCceeec---CCCCc
Q 013602 252 AATKKAGEEIAHTYNHIYG--LSLTGLRFFTVYGPWG------R----PDMAYFFFTRDIL-NRKSIPIFES---PDHGT 315 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~g--i~~~ilrpg~v~G~~~------~----~~~~~~~~~~~~~-~g~~~~~~~~---~~~~~ 315 (439)
+.+|+++|.+++.++++ + ++++++||++||||+. . ...++..+...+. .+..+.++.. ..+++
T Consensus 158 ~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 236 (348)
T 1ek6_A 158 GKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236 (348)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSS
T ss_pred HHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCc
Confidence 99999999999999877 5 9999999999999952 1 1335555666555 5666666521 01567
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVP 395 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~ 395 (439)
..++|+|++|+|++++.+++.+... ..+++||+++++++|+.|+++.+.+.+|.+.+....+. ..++..
T Consensus 237 ~~~~~i~v~Dva~a~~~~~~~~~~~----------~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~ 305 (348)
T 1ek6_A 237 GVRDYIHVVDLAKGHIAALRKLKEQ----------CGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR-REGDVA 305 (348)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHTTT----------CCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECC-CTTCCS
T ss_pred eEEeeEEHHHHHHHHHHHHhccccc----------CCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCC-CCccch
Confidence 8999999999999999999865311 11279999999999999999999999998766554442 233455
Q ss_pred cccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 396 FTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 396 ~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
...+|++|++++|||+|+++++++|+++++||+++...
T Consensus 306 ~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~~~ 343 (348)
T 1ek6_A 306 ACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSG 343 (348)
T ss_dssp EECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred hhccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcccc
Confidence 67789999999999999999999999999999987553
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-45 Score=359.26 Aligned_cols=310 Identities=26% Similarity=0.401 Sum_probs=251.7
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHh--CCCeEEEEECCCCCCChhHHH----HHHHhhhcCCeEEEEcccCCHHHHHHh
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKR--RGDGVLGLDNFNDYYDPSLKK----ARQALLERSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~--~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~v~~~~~Dl~d~~~~~~~ 169 (439)
.+.+|+||||||+||||++++++|++ +|++|++++|........... .........++.++.+|++|.++++++
T Consensus 7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 86 (362)
T 3sxp_A 7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRL 86 (362)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHH
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHh
Confidence 36789999999999999999999999 999999999965411000000 001112234789999999999999998
Q ss_pred -hcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCC
Q 013602 170 -FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPA 248 (439)
Q Consensus 170 -~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~ 248 (439)
..+ +|+||||||... .+..++...+++|+.|+.+++++|++.+. +||++||.++||.... +++|+++. .|.
T Consensus 87 ~~~~--~D~vih~A~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~--~~V~~SS~~vyg~~~~-~~~E~~~~-~p~ 158 (362)
T 3sxp_A 87 EKLH--FDYLFHQAAVSD--TTMLNQELVMKTNYQAFLNLLEIARSKKA--KVIYASSAGVYGNTKA-PNVVGKNE-SPE 158 (362)
T ss_dssp TTSC--CSEEEECCCCCG--GGCCCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEEEGGGGCSCCS-SBCTTSCC-CCS
T ss_pred hccC--CCEEEECCccCC--ccccCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEeCcHHHhCCCCC-CCCCCCCC-CCC
Confidence 554 599999999643 35678899999999999999999999885 6999999999997766 88888766 788
Q ss_pred ChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 249 SLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 249 ~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
+.|+.+|+++|.+++.+..+ +++++|||++||||+..+. ..+..++..+..+..+.++ +++...++|+|++
T Consensus 159 ~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~ 233 (362)
T 3sxp_A 159 NVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLF---EFGEQLRDFVYIE 233 (362)
T ss_dssp SHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECS---GGGCCEEECEEHH
T ss_pred ChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEE---CCCCeEEccEEHH
Confidence 99999999999999998765 8999999999999987643 5667788888888887765 4678899999999
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHH
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLA 404 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~ 404 (439)
|+|++++.+++.+. . ++||+++++++|+.|+++.+.+.+| +.++...+.+.........+|++|+
T Consensus 234 Dva~ai~~~~~~~~-------------~-g~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d~~k~ 298 (362)
T 3sxp_A 234 DVIQANVKAMKAQK-------------S-GVYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHIEPT 298 (362)
T ss_dssp HHHHHHHHHTTCSS-------------C-EEEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-------CCCCBCCHHH
T ss_pred HHHHHHHHHHhcCC-------------C-CEEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCCcCcccceecCHHHH
Confidence 99999999987543 2 4999999999999999999999999 7666655544244556678999999
Q ss_pred HHHcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 405 QRELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 405 ~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
++.|||+|.++++|+|+++++||+++++.
T Consensus 299 ~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 327 (362)
T 3sxp_A 299 ILDLDYTPLYDLESGIKDYLPHIHAIFKG 327 (362)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHTCC---
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999887653
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=347.95 Aligned_cols=303 Identities=27% Similarity=0.415 Sum_probs=250.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+||||||+||||++++++|+++|++|++++|....... .. ..++.++.+|++|.+++.+++++.++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--------~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 71 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE--------NV-PKGVPFFRVDLRDKEGVERAFREFRPTHVS 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG--------GS-CTTCCEECCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh--------hc-ccCeEEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 579999999999999999999999999999984321110 01 146888999999999999999865669999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC-cccCC-CCCCCCCCCCCCCCCCChHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSS-SVYGL-NTKVPFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~-~v~g~-~~~~~~~e~~~~~~p~~~Y~~sK~a 257 (439)
|+||......+.+++...+++|+.|+.+++++|++.+. ++||++||. ++||. ....++.|+++. .|.+.|+.+|++
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iv~~SS~~~~~g~~~~~~~~~E~~~~-~~~~~Y~~sK~~ 149 (311)
T 2p5y_A 72 HQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGV-EKLVFASTGGAIYGEVPEGERAEETWPP-RPKSPYAASKAA 149 (311)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-SEEEEEEEHHHHHCCCCTTCCBCTTSCC-CCCSHHHHHHHH
T ss_pred ECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CEEEEeCCChhhcCCCCCCCCcCCCCCC-CCCChHHHHHHH
Confidence 99997655455677888999999999999999998875 499999998 99986 455577777655 678899999999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCC---ChHHHHHHHHHcCCCCcee--ecCCCCcceeeeeeHHHHHHHHHH
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD---MAYFFFTRDILNRKSIPIF--ESPDHGTVARDFTYIDDIVKGCLA 332 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~---~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~i~v~Dva~a~~~ 332 (439)
+|.+++.+++++|++++++||++||||+.... ..+..++..+.++.++.++ ..++++.+.++|+|++|+|++++.
T Consensus 150 ~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~ 229 (311)
T 2p5y_A 150 FEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHAL 229 (311)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHH
Confidence 99999999888899999999999999986543 2455667777778776554 111356788999999999999999
Q ss_pred HHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCc
Q 013602 333 ALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKP 412 (439)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p 412 (439)
+++.+ + ++||+++++++|+.|+++.+.+.+|.+.++...+. ..++.....+|++|+++ |||+|
T Consensus 230 ~~~~~----~-----------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~-lg~~p 292 (311)
T 2p5y_A 230 ALFSL----E-----------GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPP-RPGDLERSVLSPLKLMA-HGWRP 292 (311)
T ss_dssp HHHHC----C-----------EEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECC-CTTCCSBCCBCCHHHHT-TTCCC
T ss_pred HHhCC----C-----------CEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCC-CccchhhccCCHHHHHH-CCCCC
Confidence 98764 1 79999999999999999999999998766655443 23445667899999999 99999
Q ss_pred cCcHHHHHHHHHHHHHHH
Q 013602 413 TTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 413 ~~~l~e~l~~~v~~~~~~ 430 (439)
.++++|+|+++++||+++
T Consensus 293 ~~~~~~~l~~~~~~~~~~ 310 (311)
T 2p5y_A 293 KVGFQEGIRLTVDHFRGA 310 (311)
T ss_dssp SSCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999999764
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=347.46 Aligned_cols=306 Identities=22% Similarity=0.337 Sum_probs=253.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhC--CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRR--GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+|+||||||+||||++++++|+++ |++|++++|........ ........++.++.+|++|.+++.++++++ |
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 77 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKA----NLEAILGDRVELVVGDIADAELVDKLAAKA--D 77 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGG----GTGGGCSSSEEEEECCTTCHHHHHHHHTTC--S
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChh----HHhhhccCCeEEEECCCCCHHHHHHHhhcC--C
Confidence 579999999999999999999999 89999999964322111 011112358999999999999999999988 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC------------CCCCCCCCC
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTK------------VPFSEKDRT 244 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~------------~~~~e~~~~ 244 (439)
+|||+||......+..++...+++|+.|+.+++++|.+.+. +||++||.++||.... .+++|+++.
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~ 155 (348)
T 1oc2_A 78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY 155 (348)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCC
T ss_pred EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccccccccccCCCcCCCCCC
Confidence 99999998654445567889999999999999999999874 9999999999986532 567777655
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
.|.+.|+.+|+++|.+++.++.++|+++++|||+.||||+..+...+..++..+..+..+.++ +++...++|+|++
T Consensus 156 -~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~ 231 (348)
T 1oc2_A 156 -NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY---GEGKNVRDWIHTN 231 (348)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEE---TTSCCEEECEEHH
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEe---cCCCceEeeEEHH
Confidence 678899999999999999999888999999999999999876556667777888888887776 5678899999999
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccc-cccccCCCCCCCCcccCChHH
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK-RNIMKLPRNGDVPFTHANISL 403 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~d~~k 403 (439)
|+|++++.+++... .+++||++++.++|+.|+++.+.+.+|.+.. +.+.+ ..........+|++|
T Consensus 232 Dva~~~~~~~~~~~-------------~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~k 297 (348)
T 1oc2_A 232 DHSTGVWAILTKGR-------------MGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVT-DRAGHDLRYAIDASK 297 (348)
T ss_dssp HHHHHHHHHHHHCC-------------TTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEEC-CCTTCCCBCCBCCHH
T ss_pred HHHHHHHHHhhCCC-------------CCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCC-CCCCcccccccCHHH
Confidence 99999999987542 1279999999999999999999999997653 22222 222333445689999
Q ss_pred HHHHcCCCccCc-HHHHHHHHHHHHHHH
Q 013602 404 AQRELGYKPTTD-LQTGLKKFVRWYLSY 430 (439)
Q Consensus 404 ~~~~LG~~p~~~-l~e~l~~~v~~~~~~ 430 (439)
+++.|||+|+++ ++|+|+++++||+++
T Consensus 298 ~~~~lG~~p~~~~~~~~l~~~~~~~~~~ 325 (348)
T 1oc2_A 298 LRDELGWTPQFTDFSEGLEETIQWYTDN 325 (348)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCcHHHHHHHHHHHHHHh
Confidence 999999999988 999999999999875
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-44 Score=355.09 Aligned_cols=307 Identities=24% Similarity=0.343 Sum_probs=247.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+.+|+||||||+||||++++++|+++| ++|++++|......... ....+++++.+|++|.+++.++++++
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l-------~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 100 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINV-------PDHPAVRFSETSITDDALLASLQDEY-- 100 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGS-------CCCTTEEEECSCTTCHHHHHHCCSCC--
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhc-------cCCCceEEEECCCCCHHHHHHHhhCC--
Confidence 567899999999999999999999999 99999999654221110 01457999999999999999999866
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCcccCCCCCCCCC--CCCC--CC-CCCC
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA-NPQPAIVWASSSSVYGLNTKVPFS--EKDR--TD-QPAS 249 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~~V~~SS~~v~g~~~~~~~~--e~~~--~~-~p~~ 249 (439)
|+|||+||......+..++...+++|+.++.+++++|++. +. ++||++||.++||.....++. |++. +. .|.+
T Consensus 101 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~ 179 (377)
T 2q1s_A 101 DYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRL-KKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDS 179 (377)
T ss_dssp SEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSC-CEEEEEEEC--------------CCCCCCCSSCCCS
T ss_pred CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEeCCHHHcCCCCCCCcCcccccccccccCCCC
Confidence 9999999986554455678899999999999999999988 64 499999999999977666677 7662 32 5678
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCC---------CC----CChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 250 LYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWG---------RP----DMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~---------~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.|+.+|+++|.+++++++++|+++++|||++||||+. .+ ...+..++..+..+.++.++ ++++.
T Consensus 180 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~g~~ 256 (377)
T 2q1s_A 180 PYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLE---NGGVA 256 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCS---GGGCC
T ss_pred chHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEe---CCCCe
Confidence 9999999999999999888899999999999999987 33 45667788888888887765 46788
Q ss_pred eeeeeeHHHHHHH-HHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCC
Q 013602 317 ARDFTYIDDIVKG-CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVP 395 (439)
Q Consensus 317 ~~~~i~v~Dva~a-~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~ 395 (439)
.++|+|++|+|++ ++.+++.+. . ++||+++++++|+.|+++.+.+.+|.+.++...+. ...+..
T Consensus 257 ~~~~i~v~Dva~a~i~~~~~~~~-------------~-g~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~-~~~~~~ 321 (377)
T 2q1s_A 257 TRDFIFVEDVANGLIACAADGTP-------------G-GVYNIASGKETSIADLATKINEITGNNTELDRLPK-RPWDNS 321 (377)
T ss_dssp EECCEEHHHHHHHHHHHHHHCCT-------------T-EEEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCC-CGGGCC
T ss_pred EEeeEEHHHHHHHHHHHHHhcCC-------------C-CeEEecCCCceeHHHHHHHHHHHhCCCCCceeCCC-Cccccc
Confidence 9999999999999 999987643 2 49999999999999999999999998766555442 223334
Q ss_pred -cccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHc
Q 013602 396 -FTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 396 -~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~ 431 (439)
...+|++|++++|||+|.++++|+|+++++||+++.
T Consensus 322 ~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 358 (377)
T 2q1s_A 322 GKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANL 358 (377)
T ss_dssp -CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHTH
T ss_pred cccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhh
Confidence 577899999999999999999999999999998875
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=343.87 Aligned_cols=317 Identities=20% Similarity=0.242 Sum_probs=254.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
++|+||||||+||||++++++|+++|++|++++|+....... .........++.++.+|++|.+++.++++++++|+
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 78 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASW---RLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDE 78 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTH---HHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccc---cHhhccccCceeEEECCCCCHHHHHHHHHhcCCCE
Confidence 568999999999999999999999999999999976543221 11111123478999999999999999999878899
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a 257 (439)
||||||......+.+++...+++|+.|+.+++++|++.+..++||++||.++||.....++.|+.+. .|.+.|+.+|++
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~-~~~~~Y~~sK~~ 157 (345)
T 2z1m_A 79 VYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPF-YPRSPYAVAKLF 157 (345)
T ss_dssp EEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHH
T ss_pred EEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCC-CCCChhHHHHHH
Confidence 9999998655555678889999999999999999998875359999999999998777778887765 678899999999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChH---HHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHH
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAY---FFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 334 (439)
+|.+++.++.++++++.++|+.++|||+....... ..++..+..+.....+. +++...++|+|++|+|++++.++
T Consensus 158 ~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~Dva~a~~~~~ 235 (345)
T 2z1m_A 158 GHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVL--GNLNAKRDWGYAPEYVEAMWLMM 235 (345)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE--SCTTCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeee--CCCCceeeeEEHHHHHHHHHHHH
Confidence 99999999988899999999999999986544332 23344455665443221 56778899999999999999998
Q ss_pred hhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccccc-------------------ccC-CCCCCC
Q 013602 335 DTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNI-------------------MKL-PRNGDV 394 (439)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~-------------------~~~-~~~~~~ 394 (439)
+.+.. ++||+++++++|+.|+++.+.+.+|.+.++.. .+. ....+.
T Consensus 236 ~~~~~--------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (345)
T 2z1m_A 236 QQPEP--------------DDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEV 301 (345)
T ss_dssp TSSSC--------------CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCC
T ss_pred hCCCC--------------ceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCc
Confidence 75431 68999999999999999999999998654220 010 122334
Q ss_pred CcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHccCC
Q 013602 395 PFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGG 434 (439)
Q Consensus 395 ~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 434 (439)
....+|++|++++|||+|.++++|+|+++++||.++...+
T Consensus 302 ~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~~ 341 (345)
T 2z1m_A 302 DILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRDR 341 (345)
T ss_dssp CBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHC-
T ss_pred ceeecCHHHHHHHcCCcccCCHHHHHHHHHHHHHHHhccc
Confidence 4556899999999999999999999999999999987654
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-43 Score=341.31 Aligned_cols=319 Identities=27% Similarity=0.435 Sum_probs=249.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+||||||+||||++++++|+++|++|++++|........... .......++.++.+|++|.+++.+++++.++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi 78 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPV--IERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHH--HHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHH--HHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence 5799999999999999999999999999998754332222111 11112346889999999999999999876679999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
||||........+++...+++|+.|+.++++++++.+.. +||++||.++||.....++.|+.+...+.+.|+.+|+++|
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 157 (338)
T 1udb_A 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHH
T ss_pred ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHH
Confidence 999975544445677789999999999999999988754 9999999999997766677777665334789999999999
Q ss_pred HHHHHHHhHh-CCcEEEEeeccccCCCC------C----CCChHHHHHHHHH-cCCCCceeec---CCCCcceeeeeeHH
Q 013602 260 EIAHTYNHIY-GLSLTGLRFFTVYGPWG------R----PDMAYFFFTRDIL-NRKSIPIFES---PDHGTVARDFTYID 324 (439)
Q Consensus 260 ~~~~~~~~~~-gi~~~ilrpg~v~G~~~------~----~~~~~~~~~~~~~-~g~~~~~~~~---~~~~~~~~~~i~v~ 324 (439)
.+++.++.+. +++++++||+++|||+. . ...++..+..... .+..+.++.. ..++.+.++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 237 (338)
T 1udb_A 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_dssp HHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHH
T ss_pred HHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHH
Confidence 9999998876 89999999999999842 1 1234444544444 3444444421 02467889999999
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHH
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLA 404 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~ 404 (439)
|+|++++.+++..... ..+++||+++++++|+.|+++.+.+.+|.+.+....+. ..++.....+|++|+
T Consensus 238 Dva~a~~~~l~~~~~~----------~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~ 306 (338)
T 1udb_A 238 DLADGHVVAMEKLANK----------PGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-REGDLPAYWADASKA 306 (338)
T ss_dssp HHHHHHHHHHHHHTTC----------CEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECC-CTTCCSBCCBCCHHH
T ss_pred HHHHHHHHHHhhhhcc----------CCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCC-CCCchhhhhcCHHHH
Confidence 9999999998764211 11279999999999999999999999998766554442 334455677899999
Q ss_pred HHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 405 QRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 405 ~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
+++|||+|+++++|+|+++++||+++.+
T Consensus 307 ~~~lG~~p~~~l~~~l~~~~~w~~~~~~ 334 (338)
T 1udb_A 307 DRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999988754
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=351.52 Aligned_cols=324 Identities=23% Similarity=0.359 Sum_probs=251.6
Q ss_pred CCEEEEECCCChHHHHHHHHHH-hCCCeEEEEECCCCCCCh-----hHHHHH--HHhh-h---cCC---eEEEEcccCCH
Q 013602 99 GISVLVTGAAGFVGTHVSAALK-RRGDGVLGLDNFNDYYDP-----SLKKAR--QALL-E---RSG---IFIVEGDINDM 163 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~-~~G~~V~~~~r~~~~~~~-----~~~~~~--~~~~-~---~~~---v~~~~~Dl~d~ 163 (439)
+|+||||||+||||++++++|+ ++|++|++++|....... ...... .+.. . ..+ +.++.+|++|.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 4689999999999999999999 999999999996543200 011111 0111 1 124 89999999999
Q ss_pred HHHHHhhcccC-ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-------C
Q 013602 164 ALLKKLFDVVS-FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT-------K 235 (439)
Q Consensus 164 ~~~~~~~~~~~-~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~-------~ 235 (439)
+++.++++... +|+||||||......+.+++...+++|+.|+.+++++|++.+.. +||++||.++||... .
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~SS~~v~g~~~~~~~~~~~ 160 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEECCHHHhCCCCcccccccc
Confidence 99999998554 79999999986544455678899999999999999999988754 999999999998765 5
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC---------CCChHHHHH----HHHHcC
Q 013602 236 VPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR---------PDMAYFFFT----RDILNR 302 (439)
Q Consensus 236 ~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~---------~~~~~~~~~----~~~~~g 302 (439)
.+++|+++. .|.+.|+.+|+++|.+++.++.++|+++++|||++||||+.. ...++..++ ..+..+
T Consensus 161 ~~~~E~~~~-~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 239 (397)
T 1gy8_A 161 EPIDINAKK-SPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPD 239 (397)
T ss_dssp CCBCTTSCC-BCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC
T ss_pred cCcCccCCC-CCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHhc
Confidence 678887766 678899999999999999999888999999999999999642 233444444 244455
Q ss_pred C------------CCceeec---CCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCC---cEEEecCCCcc
Q 013602 303 K------------SIPIFES---PDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQL---RVFNLGNTSPV 364 (439)
Q Consensus 303 ~------------~~~~~~~---~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~ 364 (439)
. .+.++.. ..+++..++|+|++|+|++++.+++.+..... ...+ ++||+++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~-------~~~~~~~~~~ni~~~~~~ 312 (397)
T 1gy8_A 240 QRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGP-------NDKSKYFSVFNLGTSRGY 312 (397)
T ss_dssp -----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCT-------TTGGGSEEEEEESCSCCE
T ss_pred CccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhccccccc-------ccccCCCcEEEeCCCCcc
Confidence 4 3444410 01567899999999999999999986542100 0012 69999999999
Q ss_pred cHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCccC-cHHHHHHHHHHHHHHHcc
Q 013602 365 PVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTT-DLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 365 t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~-~l~e~l~~~v~~~~~~~~ 432 (439)
|+.|+++.+.+.+|.+.++...+. ..++.....+|++|+++.|||+|++ +++++|+++++||+++.+
T Consensus 313 s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~~~ 380 (397)
T 1gy8_A 313 SVREVIEVARKTTGHPIPVRECGR-REGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPN 380 (397)
T ss_dssp EHHHHHHHHHHHHCCCCCEEEECC-CTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTT
T ss_pred cHHHHHHHHHHHhCCCCCeeeCCC-CCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhccc
Confidence 999999999999998766554442 2344556789999999999999998 999999999999988743
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=346.06 Aligned_cols=310 Identities=25% Similarity=0.432 Sum_probs=251.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
|+||||||+||||++++++|+++ |++|++++|......... ........++.++.+|++|.+++.++++..++|+|
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES---LSDISESNRYNFEHADICDSAEITRIFEQYQPDAV 77 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGG---GTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhh---hhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEE
Confidence 47999999999999999999998 799999998542111110 01111235789999999999999999985556999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhc--CCC------CeEEEecCCcccCCCCC--C--------CCCC
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA--NPQ------PAIVWASSSSVYGLNTK--V--------PFSE 240 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~--~~~------~~~V~~SS~~v~g~~~~--~--------~~~e 240 (439)
|||||......+.++++..+++|+.|+.+++++|.+. +.. .+||++||.++||.... . +++|
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E 157 (361)
T 1kew_A 78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred EECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCC
Confidence 9999986544456778899999999999999999987 642 29999999999986542 1 6677
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
+++. .+.+.|+.+|+++|.+++.++.++|+++++|||+.||||+..+...+..++..+..+..++++ +++...++|
T Consensus 158 ~~~~-~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 233 (361)
T 1kew_A 158 TTAY-APSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDW 233 (361)
T ss_dssp TSCC-CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEE---TTSCCEEEE
T ss_pred CCCC-CCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEc---CCCceeEee
Confidence 7655 678999999999999999999888999999999999999876556667777888888887776 577889999
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccc--------cccCCCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN--------IMKLPRNG 392 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~--------~~~~~~~~ 392 (439)
+|++|+|++++.+++... .|++||++++.++|+.|+++.+.+.+|.+.+.. ..+ ....
T Consensus 234 i~v~Dva~a~~~~~~~~~-------------~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~-~~~~ 299 (361)
T 1kew_A 234 LYVEDHARALHMVVTEGK-------------AGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVA-DRPG 299 (361)
T ss_dssp EEHHHHHHHHHHHHHHCC-------------TTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEEC-CCTT
T ss_pred EEHHHHHHHHHHHHhCCC-------------CCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecC-CCCc
Confidence 999999999999987542 237999999999999999999999998654311 111 1222
Q ss_pred CCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 393 DVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 393 ~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
......+|++|++++|||+|.++++|+|+++++||+++
T Consensus 300 ~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 300 HDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp CCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred ccceeecCHHHHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 33445789999999999999999999999999999875
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=351.15 Aligned_cols=320 Identities=22% Similarity=0.291 Sum_probs=248.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCCh-------------hHHHH-HHHhhhcCCeEEEEcccCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDP-------------SLKKA-RQALLERSGIFIVEGDIND 162 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~-------------~~~~~-~~~~~~~~~v~~~~~Dl~d 162 (439)
.++++||||||+||||++++++|+++|++|++++|....... ..... ........++.++.+|++|
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d 88 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 88 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence 467899999999999999999999999999999983211000 00000 0001124579999999999
Q ss_pred HHHHHHhhcccCccEEEEcccccCccccccChh---HHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCC
Q 013602 163 MALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPN---SYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 163 ~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~---~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
.+++.+++++.++|+||||||.........++. ..+++|+.|+.+++++|++.+..++||++||.++||... .++.
T Consensus 89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~~ 167 (404)
T 1i24_A 89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIE 167 (404)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBC
T ss_pred HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCCC
Confidence 999999999866699999999765444444554 478999999999999999987534999999999998654 3566
Q ss_pred CCC-------------CCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC-----------------C
Q 013602 240 EKD-------------RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP-----------------D 289 (439)
Q Consensus 240 e~~-------------~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~-----------------~ 289 (439)
|+. .+..|.+.|+.+|+++|.+++.+++++|+++++|||++||||+..+ .
T Consensus 168 E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~ 247 (404)
T 1i24_A 168 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 247 (404)
T ss_dssp SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTC
T ss_pred ccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchh
Confidence 541 1335678999999999999999988889999999999999998643 2
Q ss_pred ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHH
Q 013602 290 MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDL 369 (439)
Q Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el 369 (439)
..+..++..+..++.+.++ +++.+.++|+|++|+|++++.+++.+...+ ..++||+++ +++|+.|+
T Consensus 248 ~~~~~~~~~~~~g~~~~~~---g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g----------~~~~yni~~-~~~s~~e~ 313 (404)
T 1i24_A 248 TALNRFCVQAAVGHPLTVY---GKGGQTRGYLDIRDTVQCVEIAIANPAKAG----------EFRVFNQFT-EQFSVNEL 313 (404)
T ss_dssp CHHHHHHHHHHHTCCEEEE---TTSCCEEEEEEHHHHHHHHHHHHHSCCCTT----------CEEEEEECS-EEEEHHHH
T ss_pred hHHHHHHHHHHcCCeeEEe---CCCCceECcEEHHHHHHHHHHHHhCcccCC----------CceEEEECC-CCCcHHHH
Confidence 4567788888888887666 577889999999999999999997643210 116999998 88999999
Q ss_pred HHHHHHH---hCCccccccccCCCC-CCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 370 VSILERL---LKVKAKRNIMKLPRN-GDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 370 ~~~l~~~---~g~~~~~~~~~~~~~-~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
++.+.+. +|.+.++...+.+.. .......+|++|++ +|||+|.++++++++++++|++.+.+
T Consensus 314 ~~~i~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~~~~~~~~~~~ 379 (404)
T 1i24_A 314 ASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFKD 379 (404)
T ss_dssp HHHHHHHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHhhCCCccccccCcccCccccceEecCHHHHH-HcCCCcCcCHHHHHHHHHHHHHhhhh
Confidence 9999998 777655544443222 12334567999997 79999999999999999999987654
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=348.47 Aligned_cols=305 Identities=23% Similarity=0.340 Sum_probs=252.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+|+||||||+||||++++++|+++|++|++++|+....... ...+++++.+|++|.+++.++++++ |
T Consensus 27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~v~~~~~Dl~d~~~~~~~~~~~--d 95 (379)
T 2c5a_A 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE---------DMFCDEFHLVDLRVMENCLKVTEGV--D 95 (379)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG---------GGTCSEEEECCTTSHHHHHHHHTTC--S
T ss_pred ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh---------ccCCceEEECCCCCHHHHHHHhCCC--C
Confidence 3578999999999999999999999999999999966532211 1347899999999999999999866 9
Q ss_pred EEEEcccccCccc-cccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC-----CCCCCCCC-CCCCCC
Q 013602 177 HVMHLAAQAGVRY-AMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTK-----VPFSEKDR-TDQPAS 249 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~-~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~-----~~~~e~~~-~~~p~~ 249 (439)
+|||+||...... ..+++...+++|+.|+.+++++|++.+.. +||++||.++|+.... .++.|++. +..|.+
T Consensus 96 ~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~ 174 (379)
T 2c5a_A 96 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 174 (379)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred EEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCC
Confidence 9999999754322 25778899999999999999999988754 9999999999985432 33556552 225678
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCC-CceeecCCCCcceeeeeeHH
Q 013602 250 LYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKS-IPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~i~v~ 324 (439)
.|+.+|+++|.+++.+++++|+++++|||+.||||+.... ..+..++..+..+.. +.++ +++...++|+|++
T Consensus 175 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~ 251 (379)
T 2c5a_A 175 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW---GDGLQTRSFTFID 251 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEE---SCSCCEECCEEHH
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEe---CCCCeeEEEEEHH
Confidence 9999999999999999888899999999999999976532 256667777777776 5555 5778899999999
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHH
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLA 404 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~ 404 (439)
|+|++++.+++.+. +++||+++++++|+.|+++.+.+.+|.+.++...+.+. ......+|++|+
T Consensus 252 Dva~ai~~~l~~~~--------------~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~--~~~~~~~d~~k~ 315 (379)
T 2c5a_A 252 ECVEGVLRLTKSDF--------------REPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE--GVRGRNSDNNLI 315 (379)
T ss_dssp HHHHHHHHHHHSSC--------------CSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC--CCSBCEECCHHH
T ss_pred HHHHHHHHHhhccC--------------CCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCCC--CcccccCCHHHH
Confidence 99999999987541 17899999999999999999999999877665554432 344456899999
Q ss_pred HHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 405 QRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 405 ~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
++.|||+|+++++|+|+++++||+++.+
T Consensus 316 ~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 343 (379)
T 2c5a_A 316 KEKLGWAPNMRLKEGLRITYFWIKEQIE 343 (379)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999988764
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=342.68 Aligned_cols=310 Identities=23% Similarity=0.346 Sum_probs=249.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-HHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-MALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~d~ 177 (439)
|+||||||+||||++++++|+++ |++|++++|+..... ......++.++.+|++| .+.++++++++ |+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--d~ 70 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS--------RFLNHPHFHFVEGDISIHSEWIEYHVKKC--DV 70 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG--------GGTTCTTEEEEECCTTTCSHHHHHHHHHC--SE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHH--------HhhcCCCeEEEeccccCcHHHHHhhccCC--CE
Confidence 58999999999999999999998 899999999543211 11234579999999998 46788888877 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC------CCCCChH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT------DQPASLY 251 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~------~~p~~~Y 251 (439)
|||+||.........++...+++|+.++.+++++|++.+ ++||++||.++||.....++.|+++. ..|.+.|
T Consensus 71 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y 148 (345)
T 2bll_A 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 148 (345)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH
T ss_pred EEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecHHHcCCCCCCCcCCcccccccCcccCccccc
Confidence 999999765444456778899999999999999999887 49999999999998766677777643 1244589
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC--------CChHHHHHHHHHcCCCCceeecCCCCcceeeeeeH
Q 013602 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP--------DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYI 323 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v 323 (439)
+.+|+++|.+++.+++++|++++++||+.||||+... ...+..++..+..+..+.++ +++++.++|+|+
T Consensus 149 ~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v 225 (345)
T 2bll_A 149 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTDI 225 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEG---GGSCCEEECEEH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEE---CCCCEEEEEEEH
Confidence 9999999999999988889999999999999998642 23456677778888877665 467789999999
Q ss_pred HHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC-cccHHHHHHHHHHHhCCccccccccCCC------------
Q 013602 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS-PVPVSDLVSILERLLKVKAKRNIMKLPR------------ 390 (439)
Q Consensus 324 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~t~~el~~~l~~~~g~~~~~~~~~~~~------------ 390 (439)
+|+|++++.+++.+... ..+++||+++++ ++|+.|+++.+.+.+|.+......+...
T Consensus 226 ~Dva~a~~~~~~~~~~~----------~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 295 (345)
T 2bll_A 226 RDGIEALYRIIENAGNR----------CDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYG 295 (345)
T ss_dssp HHHHHHHHHHHHCGGGT----------TTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC-------
T ss_pred HHHHHHHHHHHhhcccc----------CCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhcc
Confidence 99999999999865321 123899999986 8999999999999998765433322110
Q ss_pred --CCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHccCC
Q 013602 391 --NGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGG 434 (439)
Q Consensus 391 --~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 434 (439)
..+.....+|++|++++|||+|.++++++|+++++||+++.+..
T Consensus 296 ~~~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~~~ 341 (345)
T 2bll_A 296 KGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 341 (345)
T ss_dssp -----CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCTT
T ss_pred ccccchhhhcccHHHHHHhcCCCccccHHHHHHHHHHHHHHcCCCC
Confidence 01234456899999999999999999999999999999886644
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-43 Score=345.33 Aligned_cols=319 Identities=20% Similarity=0.229 Sum_probs=250.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChh-HHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS-LKKARQAL-LERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
||+||||||+||||++++++|+++|++|++++|+....... ........ ....++.++.+|++|.+++.++++++++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 47899999999999999999999999999999954321100 00000000 01257899999999999999999987789
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ--PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~--~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
+||||||........+++...+++|+.|+.++++++++.+.. ++||++||.++||.....+++|+++. .|.+.|+.+
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~-~~~~~Y~~s 159 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVA 159 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCC-CCCSHHHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCC-CCCChHHHH
Confidence 999999986555556778889999999999999999988752 59999999999998776678887765 678899999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCC---hHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDM---AYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 331 (439)
|+++|.+++.++.+++++++++||+++|||+..... .+..++..+..|....... +++++.++|+|++|+|++++
T Consensus 160 K~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~--g~~~~~~~~i~v~Dva~a~~ 237 (372)
T 1db3_A 160 KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL--GNMDSLRDWGHAKDYVKMQW 237 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEE--SCTTCEECCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceee--cCCCceeeeeEHHHHHHHHH
Confidence 999999999999889999999999999999865432 2344555666776433221 57789999999999999999
Q ss_pred HHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccccc--------------------------
Q 013602 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNI-------------------------- 385 (439)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~-------------------------- 385 (439)
.+++.+. +++||+++++++|+.|+++.+.+.+|.+.++..
T Consensus 238 ~~~~~~~--------------~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 303 (372)
T 1db3_A 238 MMLQQEQ--------------PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVI 303 (372)
T ss_dssp HTTSSSS--------------CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEE
T ss_pred HHHhcCC--------------CceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccce
Confidence 9887533 168999999999999999999999997654221
Q ss_pred ---ccC-CCCCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHccCC
Q 013602 386 ---MKL-PRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGG 434 (439)
Q Consensus 386 ---~~~-~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 434 (439)
.+. .+..+.....+|++|++++|||+|.++++|+|+++++||+++.+.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~ 356 (372)
T 1db3_A 304 IAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKH 356 (372)
T ss_dssp EEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTT
T ss_pred eeccccccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhcc
Confidence 010 1223344566899999999999999999999999999999987653
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=345.16 Aligned_cols=318 Identities=19% Similarity=0.196 Sum_probs=252.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChh-HHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS-LKKARQAL--LERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
|+||||||+||||++++++|+++|++|++++|+....... ........ ....++.++.+|++|.+++.++++++++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999999976432110 00000000 01347899999999999999999987889
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ--PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~--~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
+||||||......+.+++...+++|+.|+.++++++++.+.. ++||++||.++|+.....+++|+++. .|.+.|+.+
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~-~~~~~Y~~s 183 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF-YPRSPYGAA 183 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCC-CCCSHHHHH
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCC-CCCChhHHH
Confidence 999999986554455678889999999999999999988751 49999999999997777788888765 678899999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCCh---HHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMA---YFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 331 (439)
|+++|.+++.++.+++++++++||+++|||+...... +..++..+..+....... ++++..++|+|++|+|++++
T Consensus 184 K~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~--g~~~~~~~~i~v~Dva~a~~ 261 (375)
T 1t2a_A 184 KLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL--GNLDAKRDWGHAKDYVEAMW 261 (375)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEE--SCTTCEECCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEe--CCCCceeeeEEHHHHHHHHH
Confidence 9999999999998889999999999999998654332 234455566676443221 57788999999999999999
Q ss_pred HHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccccc------------------c-cC-CCC
Q 013602 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNI------------------M-KL-PRN 391 (439)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~------------------~-~~-~~~ 391 (439)
.+++.+.. ++||+++++++|+.|+++.+.+.+|.+.++.. . +. .+.
T Consensus 262 ~~~~~~~~--------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 327 (375)
T 1t2a_A 262 LMLQNDEP--------------EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRP 327 (375)
T ss_dssp HHHHSSSC--------------CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCS
T ss_pred HHHhcCCC--------------ceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCCc
Confidence 99875431 68999999999999999999999997654220 0 10 122
Q ss_pred CCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHccCC
Q 013602 392 GDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGG 434 (439)
Q Consensus 392 ~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 434 (439)
.+.....+|++|++++|||+|+++++|+|+++++||++....+
T Consensus 328 ~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~ 370 (375)
T 1t2a_A 328 TEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRTN 370 (375)
T ss_dssp SCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhhccC
Confidence 3344567899999999999999999999999999999987654
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=340.72 Aligned_cols=303 Identities=20% Similarity=0.349 Sum_probs=244.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+|+||||||+||||++++++|+++|++|++++|.. .+|++|.+++.++++..++|+
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~-----------------------~~D~~d~~~~~~~~~~~~~d~ 58 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQ 58 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc-----------------------cCCccCHHHHHHHHHhcCCCE
Confidence 457999999999999999999999999999988721 279999999999999555699
Q ss_pred EEEcccccCc-cccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC---CCCCC-ChHH
Q 013602 178 VMHLAAQAGV-RYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR---TDQPA-SLYA 252 (439)
Q Consensus 178 Vi~~Ag~~~~-~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~---~~~p~-~~Y~ 252 (439)
|||+||.... .....++...+++|+.++.+++++|++.+.. +||++||.++||.....++.|+++ +..|. +.|+
T Consensus 59 vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~ 137 (321)
T 1e6u_A 59 VYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYA 137 (321)
T ss_dssp EEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHH
T ss_pred EEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccH
Confidence 9999997542 2345677889999999999999999998854 999999999999877777888763 22343 5899
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC----ChHHHHHHHHHc----C-CCCceeecCCCCcceeeeeeH
Q 013602 253 ATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILN----R-KSIPIFESPDHGTVARDFTYI 323 (439)
Q Consensus 253 ~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~i~v 323 (439)
.+|+++|.+++++++++|+++++|||+.||||+.... ..+..++..+.. | .++.++ ++++..++|+|+
T Consensus 138 ~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~g~~~~~~i~v 214 (321)
T 1e6u_A 138 IAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVW---GSGTPMREFLHV 214 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEE---SCSCCEECEEEH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEc---CCCCEEEEeEEH
Confidence 9999999999999888899999999999999987532 455666666654 3 455555 577899999999
Q ss_pred HHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHH
Q 013602 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISL 403 (439)
Q Consensus 324 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 403 (439)
+|+|++++.+++.+.... .+.+...+++||+++++++|+.|+++.+.+.+|.+.++...+. .........+|++|
T Consensus 215 ~Dva~~~~~~~~~~~~~~----~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k 289 (321)
T 1e6u_A 215 DDMAAASIHVMELAHEVW----LENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS-KPDGTPRKLLDVTR 289 (321)
T ss_dssp HHHHHHHHHHHHSCHHHH----HHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT-SCCCCSBCCBCCHH
T ss_pred HHHHHHHHHHHhCccccc----ccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCC-CCCCcccccCCHHH
Confidence 999999999998765310 0000012379999999999999999999999998766555443 22344556789999
Q ss_pred HHHHcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 404 AQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 404 ~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
+++ |||+|.++++|+|+++++||+++.+.
T Consensus 290 ~~~-lG~~p~~~~~~~l~~~~~~~~~~~~~ 318 (321)
T 1e6u_A 290 LHQ-LGWYHEISLEAGLASTYQWFLENQDR 318 (321)
T ss_dssp HHH-TTCCCCCCHHHHHHHHHHHHHHTC--
T ss_pred HHh-cCCccCCcHHHHHHHHHHHHHHHHHh
Confidence 999 99999999999999999999988754
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=338.79 Aligned_cols=306 Identities=23% Similarity=0.393 Sum_probs=248.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+.+|+||||||+||||++++++|+++|++|++++|......... .......++.++.+|+.|.. +.+ +|
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~D~~~~~-----~~~--~d 93 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV----EHWIGHENFELINHDVVEPL-----YIE--VD 93 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT----GGGTTCTTEEEEECCTTSCC-----CCC--CS
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhh----hhhccCCceEEEeCccCChh-----hcC--CC
Confidence 56789999999999999999999999999999999643221111 11112357899999998853 344 59
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC----CCCCCChHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR----TDQPASLYA 252 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~----~~~p~~~Y~ 252 (439)
+|||+||.........++...+++|+.|+.+++++|++.+. +||++||.++||.....++.|+.+ +..|.+.|+
T Consensus 94 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~ 171 (343)
T 2b69_A 94 QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYD 171 (343)
T ss_dssp EEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHH
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchH
Confidence 99999998655445567888999999999999999999884 999999999999776667777642 224667899
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC--CChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 253 ATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP--DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 253 ~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
.+|+++|.+++.+++++|++++++||++||||+..+ ...+..++..+++++.+.++ ++++..++|+|++|+|+++
T Consensus 172 ~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~v~Dva~a~ 248 (343)
T 2b69_A 172 EGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGL 248 (343)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEE---SSSCCEEECEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEc---CCCCeEEeeEeHHHHHHHH
Confidence 999999999999988889999999999999998653 34566777778888887766 5778899999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCC
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGY 410 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~ 410 (439)
+.+++.+. +++||+++++++|+.|+++.+.+.+|.+.++...+.. ..+.....+|++|++++|||
T Consensus 249 ~~~~~~~~--------------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~-~~~~~~~~~d~~k~~~~lG~ 313 (343)
T 2b69_A 249 VALMNSNV--------------SSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA-QDDPQKRKPDIKKAKLMLGW 313 (343)
T ss_dssp HHHHTSSC--------------CSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC-TTCCCCCCBCCHHHHHHHCC
T ss_pred HHHHhcCC--------------CCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCC-CCCCceecCCHHHHHHHcCC
Confidence 99987532 2789999999999999999999999987766555432 23344567899999999999
Q ss_pred CccCcHHHHHHHHHHHHHHHccC
Q 013602 411 KPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 411 ~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
+|.++++|+|+++++||+++.+.
T Consensus 314 ~p~~~l~e~l~~~~~~~~~~~~~ 336 (343)
T 2b69_A 314 EPVVPLEEGLNKAIHYFRKELEY 336 (343)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987653
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=340.50 Aligned_cols=301 Identities=28% Similarity=0.439 Sum_probs=251.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+.+|+|||||||||||++++++|+++|++|++++|+......... .........++.++.+|++ ++|
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~------------~~d 71 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPE-GTGKFLEKPVLELEERDLS------------DVR 71 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCT-TSSEEECSCGGGCCHHHHT------------TEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchh-hhhhhccCCCeeEEeCccc------------cCC
Confidence 457899999999999999999999999999999996542100000 0001112245677777776 459
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~ 256 (439)
+|||+||.........++...++ |+.++.+++++|++.+. ++||++||.++||.....++.|+++. .|.+.|+.+|+
T Consensus 72 ~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v-~~~v~~SS~~v~~~~~~~~~~E~~~~-~p~~~Y~~sK~ 148 (321)
T 3vps_A 72 LVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGV-PKVVVGSTCEVYGQADTLPTPEDSPL-SPRSPYAASKV 148 (321)
T ss_dssp EEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTC-CEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHH
T ss_pred EEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCC-CeEEEecCHHHhCCCCCCCCCCCCCC-CCCChhHHHHH
Confidence 99999998766556677777788 99999999999999985 49999999999998888888888876 68899999999
Q ss_pred HHHHHHHHHHhHhCC-cEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHh
Q 013602 257 AGEEIAHTYNHIYGL-SLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335 (439)
Q Consensus 257 a~E~~~~~~~~~~gi-~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 335 (439)
++|.+++.+.+++|+ +++++||++||||+......+..++..+..++.+.++ +++...++|+|++|+|++++.+++
T Consensus 149 ~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~v~Dva~~~~~~~~ 225 (321)
T 3vps_A 149 GLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVE---GDGEQRRDFTYITDVVDKLVALAN 225 (321)
T ss_dssp HHHHHHHHHHHSSSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEE---TTSCCEECEEEHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEe---CCCCceEceEEHHHHHHHHHHHHh
Confidence 999999999988899 9999999999999988777788888888888888776 578899999999999999999988
Q ss_pred hchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCc-cC
Q 013602 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKP-TT 414 (439)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p-~~ 414 (439)
.+. .| +||+++++++|+.|+++.+. .+|.+.++...+. ...+.....+|++|+++.|||+| .+
T Consensus 226 ~~~-------------~g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~~ 289 (321)
T 3vps_A 226 RPL-------------PS-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQP-RPNEITEFRADTALQTRQIGERSGGI 289 (321)
T ss_dssp SCC-------------CS-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECC-CTTCCSBCCBCCHHHHHHHCCCSCCC
T ss_pred cCC-------------CC-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCC-CCCCcceeeccHHHHHHHhCCCCCcC
Confidence 654 13 99999999999999999999 9998877665543 34455667899999999999999 88
Q ss_pred cHHHHHHHHHHHHHHHcc
Q 013602 415 DLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 415 ~l~e~l~~~v~~~~~~~~ 432 (439)
+++|+|+++++||+++..
T Consensus 290 ~~~~~l~~~~~~~~~~~~ 307 (321)
T 3vps_A 290 GIEEGIRLTLEWWQSRDL 307 (321)
T ss_dssp CHHHHHHHHHHHHHTSCT
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999999988753
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=329.22 Aligned_cols=278 Identities=17% Similarity=0.201 Sum_probs=240.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+||||||+||||++++++|+++|++|++++| ..+|++|.+++.+++++.++|+||
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r------------------------~~~D~~d~~~~~~~~~~~~~d~vi 61 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDK------------------------KLLDITNISQVQQVVQEIRPHIII 61 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECT------------------------TTSCTTCHHHHHHHHHHHCCSEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecc------------------------cccCCCCHHHHHHHHHhcCCCEEE
Confidence 48999999999999999999999999999998 238999999999999976779999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+||.......++++...+++|+.++.+++++|++.+. +||++||.++|+.....++.|+++. .|.+.|+.+|+++|
T Consensus 62 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~SS~~vy~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 138 (287)
T 3sc6_A 62 HCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYISTDYVFQGDRPEGYDEFHNP-APINIYGASKYAGE 138 (287)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCCCCSSCBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEchhhhcCCCCCCCCCCCCCC-CCCCHHHHHHHHHH
Confidence 99998776666788999999999999999999999985 8999999999998888889998876 78899999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchh
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
.+++.+ +.+++++||+.||||+.. ..+..++..+..+..+..+ ++..++|+|++|+|++++.+++.+.
T Consensus 139 ~~~~~~----~~~~~ilR~~~v~G~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~~~- 206 (287)
T 3sc6_A 139 QFVKEL----HNKYFIVRTSWLYGKYGN--NFVKTMIRLGKEREEISVV-----ADQIGSPTYVADLNVMINKLIHTSL- 206 (287)
T ss_dssp HHHHHH----CSSEEEEEECSEECSSSC--CHHHHHHHHHTTCSEEEEE-----CSCEECCEEHHHHHHHHHHHHTSCC-
T ss_pred HHHHHh----CCCcEEEeeeeecCCCCC--cHHHHHHHHHHcCCCeEee-----cCcccCceEHHHHHHHHHHHHhCCC-
Confidence 999986 447899999999999753 4566777777778777775 3488999999999999999998655
Q ss_pred ccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccC----CCCCCCCcccCChHHHHHHcCCCccCc
Q 013602 340 STGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL----PRNGDVPFTHANISLAQRELGYKPTTD 415 (439)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~d~~k~~~~LG~~p~~~ 415 (439)
+++||+++++++|+.|+++.+.+.+|.+..+...+. ....+.....+|++|++ +|||.|.++
T Consensus 207 -------------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~p~~~ 272 (287)
T 3sc6_A 207 -------------YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLR-LNGFLQMPS 272 (287)
T ss_dssp -------------CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHH-HTTCCCCCB
T ss_pred -------------CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHH-hhCCCCCcc
Confidence 179999999999999999999999998766654432 23344556778999998 999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013602 416 LQTGLKKFVRWYLSY 430 (439)
Q Consensus 416 l~e~l~~~v~~~~~~ 430 (439)
++++|+++++|++++
T Consensus 273 ~~~~l~~~~~~~~~~ 287 (287)
T 3sc6_A 273 WEEGLERFFIETKSH 287 (287)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998653
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=337.94 Aligned_cols=315 Identities=22% Similarity=0.240 Sum_probs=249.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChh-HHHHHHH-hhhcC-CeEEEEcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS-LKKARQA-LLERS-GIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~-~~~~~-~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
|+||||||+||||++++++|+++|++|++++|+....... ....... ..... ++.++.+|++|.+++.++++++++|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 6899999999999999999999999999999976532100 0000000 00112 7899999999999999999987889
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCC----CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ----PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYA 252 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~----~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~ 252 (439)
+|||+||......+.+++...+++|+.|+.+++++|++.+.. .+||++||.++||.... +++|+++. .|.+.|+
T Consensus 109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~~~~-~~~~~Y~ 186 (381)
T 1n7h_A 109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETTPF-HPRSPYA 186 (381)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTTSCC-CCCSHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCCCCC-CCCCchH
Confidence 999999986554456778899999999999999999876521 39999999999997766 78887765 6789999
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCCh---HHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHH
Q 013602 253 ATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMA---YFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329 (439)
Q Consensus 253 ~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a 329 (439)
.+|+++|.+++.++.+++++++++|++++|||+...... +..++..+..+....... ++++..++|+|++|+|++
T Consensus 187 ~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~--g~~~~~~~~v~v~Dva~a 264 (381)
T 1n7h_A 187 ASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL--GNLQASRDWGFAGDYVEA 264 (381)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEE--SCTTCEEECEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEe--CCCCceeeeEEHHHHHHH
Confidence 999999999999998889999999999999998654322 234455556676443321 567889999999999999
Q ss_pred HHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccc--cccccC-CCCCCCCcccCChHHHHH
Q 013602 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK--RNIMKL-PRNGDVPFTHANISLAQR 406 (439)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~--~~~~~~-~~~~~~~~~~~d~~k~~~ 406 (439)
++.+++.+. +++||+++++++|+.|+++.+.+.+|.+.. +...+. .+..+.....+|++|+++
T Consensus 265 ~~~~~~~~~--------------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 330 (381)
T 1n7h_A 265 MWLMLQQEK--------------PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKE 330 (381)
T ss_dssp HHHHHTSSS--------------CCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHH
T ss_pred HHHHHhCCC--------------CCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHHH
Confidence 999987643 179999999999999999999999997532 111111 123344556789999999
Q ss_pred HcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 407 ELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 407 ~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
.|||+|.++++|+|+++++||.++..
T Consensus 331 ~lG~~p~~~l~e~l~~~~~~~~~~~~ 356 (381)
T 1n7h_A 331 VLGWKPQVGFEKLVKMMVDEDLELAK 356 (381)
T ss_dssp HHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999998764
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=335.28 Aligned_cols=300 Identities=21% Similarity=0.359 Sum_probs=243.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+||||++++++|+++| ++|++++|...... .. ...++. +.+|++|.++++++++..
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-------~~--~~~~~~-~~~d~~~~~~~~~~~~~~~~ 113 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-------FV--NLVDLN-IADYMDKEDFLIQIMAGEEF 113 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG-------GG--GTTTSC-CSEEEEHHHHHHHHHTTCCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch-------hh--cccCce-EeeecCcHHHHHHHHhhccc
Confidence 456899999999999999999999999 99999998543210 00 112333 778999999999998752
Q ss_pred -CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHH
Q 013602 174 -SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYA 252 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~ 252 (439)
++|+|||+||.... ...+++..+++|+.|+.+++++|++.+. +||++||.++||.....+++|+++. .|.+.|+
T Consensus 114 ~~~d~Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~ 188 (357)
T 2x6t_A 114 GDVEAIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREYE-KPLNVFG 188 (357)
T ss_dssp SSCCEEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGCSCSSCCCSSGGGC-CCSSHHH
T ss_pred CCCCEEEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcchHHhCCCCCCCcCCcCCC-CCCChhH
Confidence 46999999997543 4567889999999999999999999885 9999999999998776678887765 6788999
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC----CChHHHHHHHHHcCCCCceeecCCCCcc-eeeeeeHHHHH
Q 013602 253 ATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP----DMAYFFFTRDILNRKSIPIFESPDHGTV-ARDFTYIDDIV 327 (439)
Q Consensus 253 ~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~i~v~Dva 327 (439)
.+|+++|.+++.++.++|+++++|||++||||+... ...+..++..+..+..+.++ +++.. .++|+|++|+|
T Consensus 189 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~v~Dva 265 (357)
T 2x6t_A 189 YSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF---EGSENFKRDFVYVGDVA 265 (357)
T ss_dssp HHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEE---TTGGGCEECEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEe---CCCCcceEccEEHHHHH
Confidence 999999999999988889999999999999998653 24566777788888877766 56778 89999999999
Q ss_pred HHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCC---CCCCcccCChHHH
Q 013602 328 KGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN---GDVPFTHANISLA 404 (439)
Q Consensus 328 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~k~ 404 (439)
++++.+++.+. +++||+++++++|+.|+++.+.+.+|.+ .+...+.+.. .......+|++|+
T Consensus 266 ~ai~~~~~~~~--------------~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~k~ 330 (357)
T 2x6t_A 266 DVNLWFLENGV--------------SGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNL 330 (357)
T ss_dssp HHHHHHHHHCC--------------CEEEEESCSCCEEHHHHHHHHHHHHTCC-CCEEECCCGGGTTSCCSBCCCCCHHH
T ss_pred HHHHHHHhcCC--------------CCeEEecCCCcccHHHHHHHHHHHcCCC-CceecCCCcccccccccccccCHHHH
Confidence 99999998654 1899999999999999999999999987 4444443331 1233456789999
Q ss_pred HHHcCC-CccCcHHHHHHHHHHHHHHH
Q 013602 405 QRELGY-KPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 405 ~~~LG~-~p~~~l~e~l~~~v~~~~~~ 430 (439)
++ ||| .|.++++|+|+++++||+++
T Consensus 331 ~~-lG~~~~~~~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 331 RA-AGYDKPFKTVAEGVTEYMAWLNRD 356 (357)
T ss_dssp HH-TTCCCCCCCHHHHHHHHHHHHC--
T ss_pred HH-cCCCCCCCCHHHHHHHHHHHHhhc
Confidence 76 999 78889999999999999764
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=330.77 Aligned_cols=295 Identities=21% Similarity=0.332 Sum_probs=237.1
Q ss_pred cccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 94 VRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 94 ~~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+..+.+|+||||||+||||++++++|+++|++|++++|+....... .....++.++.+|++|.+++.++++..
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-------~~~l~~v~~~~~Dl~d~~~~~~~~~~~ 87 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREV-------LPPVAGLSVIEGSVTDAGLLERAFDSF 87 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGG-------SCSCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhh-------hhccCCceEEEeeCCCHHHHHHHHhhc
Confidence 4457889999999999999999999999999999999954321100 001147899999999999999999854
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC--CCCCCCCCCCCCChH
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKV--PFSEKDRTDQPASLY 251 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~--~~~e~~~~~~p~~~Y 251 (439)
++|+||||||..... +..++. +++|+.|+.+++++|.+.+. ++||++||.++|+..... +++|++ .+.+.|
T Consensus 88 ~~D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~-~~iV~~SS~~~~~~~~~~~~~~~E~~---~~~~~Y 160 (330)
T 2pzm_A 88 KPTHVVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGV-KRLLNFQTALCYGRPATVPIPIDSPT---APFTSY 160 (330)
T ss_dssp CCSEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTC-SEEEEEEEGGGGCSCSSSSBCTTCCC---CCCSHH
T ss_pred CCCEEEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCC-CEEEEecCHHHhCCCccCCCCcCCCC---CCCChH
Confidence 559999999975432 223344 89999999999999998875 499999999999865544 677766 467899
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHH-HH
Q 013602 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVK-GC 330 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~-a~ 330 (439)
+.+|+++|.+++.+ ++++++|||+++|||+. ....+..++..+..+. ..+ +++. .++|+|++|+|+ ++
T Consensus 161 ~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~-~~~~~~~~~~~~~~~~--~~~---~~~~-~~~~i~~~Dva~~a~ 229 (330)
T 2pzm_A 161 GISKTAGEAFLMMS----DVPVVSLRLANVTGPRL-AIGPIPTFYKRLKAGQ--KCF---CSDT-VRDFLDMSDFLAIAD 229 (330)
T ss_dssp HHHHHHHHHHHHTC----SSCEEEEEECEEECTTC-CSSHHHHHHHHHHTTC--CCC---EESC-EECEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCEEEEeeeeeECcCC-CCCHHHHHHHHHHcCC--EEe---CCCC-EecceeHHHHHHHHH
Confidence 99999999999886 89999999999999986 3445556667677766 333 3455 889999999999 99
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHH-----H
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLA-----Q 405 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~-----~ 405 (439)
+.+++.+. +++||++++.++|+.|+++.+.+.+|.+ ++...+... +.....+|++|+ +
T Consensus 230 ~~~~~~~~--------------g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~--~~~~~~~d~~k~~~~~l~ 292 (330)
T 2pzm_A 230 LSLQEGRP--------------TGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVVA--PGADDVPSVVLDPSKTET 292 (330)
T ss_dssp HHTSTTCC--------------CEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEEC--CCTTSCSEECBCCHHHHH
T ss_pred HHHhhcCC--------------CCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCCc--chhhccCCHHHHhhchHH
Confidence 99887532 2899999999999999999999999987 444433222 445567888888 7
Q ss_pred HHcCCCccCcHHHHHHHHHHHHHHHc
Q 013602 406 RELGYKPTTDLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 406 ~~LG~~p~~~l~e~l~~~v~~~~~~~ 431 (439)
+ |||+|.++++|+|+++++||+++-
T Consensus 293 ~-lG~~p~~~~~~~l~~~~~~~~~~~ 317 (330)
T 2pzm_A 293 E-FGWKAKVDFKDTITGQLAWYDKYG 317 (330)
T ss_dssp H-HCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred H-cCCcccCCHHHHHHHHHHHHHhhC
Confidence 7 999999999999999999998874
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=329.10 Aligned_cols=292 Identities=19% Similarity=0.159 Sum_probs=231.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+|+||||||+||||++++++|+++|++|++++|+..... .+...+++++.+|++|.+++.++++++ |+
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------~l~~~~~~~~~~Dl~d~~~~~~~~~~~--d~ 80 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQ---------RLAYLEPECRVAEMLDHAGLERALRGL--DG 80 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGG---------GGGGGCCEEEECCTTCHHHHHHHTTTC--SE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhh---------hhccCCeEEEEecCCCHHHHHHHHcCC--CE
Confidence 3469999999999999999999999999999999654211 112247899999999999999999976 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC--CCCCCCCCCCCC----CChH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTK--VPFSEKDRTDQP----ASLY 251 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~--~~~~e~~~~~~p----~~~Y 251 (439)
|||+||... ....++...+++|+.++.+++++|++.+.. +||++||.++|+.... .+ +|+++. .| .+.|
T Consensus 81 vih~a~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~-~E~~~~-~p~~~~~~~Y 155 (342)
T 2x4g_A 81 VIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVGSAYAMPRHPQGLPG-HEGLFY-DSLPSGKSSY 155 (342)
T ss_dssp EEEC--------------CHHHHHHHHHHHHHHHHHHHTCS-CEEEECCGGGSCCCTTSSCB-CTTCCC-SSCCTTSCHH
T ss_pred EEECCccCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHhhCcCCCCCCC-CCCCCC-CccccccChH
Confidence 999999743 234567789999999999999999998854 9999999999986554 34 666655 56 7899
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCC-CCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWG-RPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
+.+|+++|.++++++++ |+++++|||+.||||+. .+. +..++..+..+....+ ++..++|+|++|+|+++
T Consensus 156 ~~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~i~v~Dva~~~ 226 (342)
T 2x4g_A 156 VLCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPT--TGRVITAIGNGEMTHY------VAGQRNVIDAAEAGRGL 226 (342)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCS--TTHHHHHHHTTCCCEE------ECCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCcccc--HHHHHHHHHcCCCccc------cCCCcceeeHHHHHHHH
Confidence 99999999999999877 99999999999999987 422 4456666777765543 35788999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCC--------------CC----
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR--------------NG---- 392 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~--------------~~---- 392 (439)
+.+++.+.. +++||+++++ +|+.|+++.+.+.+|.+.++ ..+... .+
T Consensus 227 ~~~~~~~~~-------------g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ 291 (342)
T 2x4g_A 227 LMALERGRI-------------GERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSGQLPL 291 (342)
T ss_dssp HHHHHHSCT-------------TCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC----------
T ss_pred HHHHhCCCC-------------CceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999986542 2799999988 99999999999999987654 332110 00
Q ss_pred ---C-----CCcccCChHHHHHHcCC-CccCcHHHHHHHHHHHHHHH
Q 013602 393 ---D-----VPFTHANISLAQRELGY-KPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 393 ---~-----~~~~~~d~~k~~~~LG~-~p~~~l~e~l~~~v~~~~~~ 430 (439)
+ .....+|++|+++.||| +| ++++++|+++++||+++
T Consensus 292 ~~~~~~~~~~~~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~ 337 (342)
T 2x4g_A 292 LDETAIEVMAGGQFLDGRKAREELGFFST-TALDDTLLRAIDWFRDN 337 (342)
T ss_dssp ------CCTTCCCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhcCcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHc
Confidence 1 23456899999999999 99 89999999999999876
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=327.76 Aligned_cols=301 Identities=20% Similarity=0.267 Sum_probs=235.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHhC--CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRR--GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+|+||||||+||||++++++|+++ |++|++++|+.... . . ..++.++.+|++|.+++.+++++.++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--~---~------~~~~~~~~~D~~d~~~~~~~~~~~~~d 70 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNT--D---V------VNSGPFEVVNALDFNQIEHLVEVHKIT 70 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSC--H---H------HHSSCEEECCTTCHHHHHHHHHHTTCC
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccc--c---c------cCCCceEEecCCCHHHHHHHHhhcCCC
Confidence 478999999999999999999999 89999999965431 0 0 125789999999999999999966679
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC-CCCCCCCCCCCCCChHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTK-VPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~-~~~~e~~~~~~p~~~Y~~sK 255 (439)
+|||+||.... ....++...+++|+.++.+++++|++.+. ++||++||.++|+.... .+..|+.+. .|.+.|+.+|
T Consensus 71 ~vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~e~~~~-~~~~~Y~~sK 147 (312)
T 2yy7_A 71 DIYLMAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKI-KKIFWPSSIAVFGPTTPKENTPQYTIM-EPSTVYGISK 147 (312)
T ss_dssp EEEECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSC-SEEECCEEGGGCCTTSCSSSBCSSCBC-CCCSHHHHHH
T ss_pred EEEECCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccHHHhCCCCCCCCccccCcC-CCCchhHHHH
Confidence 99999997433 23467788999999999999999999875 49999999999987543 355565544 6789999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCC-----hHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 256 KAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDM-----AYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 256 ~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
+++|.+++.+++++|++++++||+.||||+..+.. ....+.. .+.++....+ ++++..++|+|++|+|+++
T Consensus 148 ~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~ 223 (312)
T 2yy7_A 148 QAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYK-AIADKKYECF---LSSETKMPMMYMDDAIDAT 223 (312)
T ss_dssp HHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHH-HHHTSEEEES---SCTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHH-HHcCCCeEEe---cCCCceeeeeeHHHHHHHH
Confidence 99999999998888999999999999997654321 2333333 3444444444 4677889999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCC--CCCCcccCChHHHHHHc
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN--GDVPFTHANISLAQREL 408 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~--~~~~~~~~d~~k~~~~L 408 (439)
+.+++.+.... ..+++||+++ +.+|+.|+++.+.+.+|. ..+.+.+.... .......+|++|++++|
T Consensus 224 ~~~~~~~~~~~---------~~~~~~ni~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~l 292 (312)
T 2yy7_A 224 INIMKAPVEKI---------KIHSSYNLAA-MSFTPTEIANEIKKHIPE-FTITYEPDFRQKIADSWPASIDDSQAREDW 292 (312)
T ss_dssp HHHHHSCGGGC---------CCSSCEECCS-EEECHHHHHHHHHTTCTT-CEEEECCCTHHHHHTTSCSSBCCHHHHHHH
T ss_pred HHHHhCccccc---------ccCceEEeCC-CccCHHHHHHHHHHHCCC-CceEeccCccccccccccccCCHHHHHHHc
Confidence 99998765311 0127999996 889999999999999983 33333221100 01122468999999999
Q ss_pred CCCccCcHHHHHHHHHHHHH
Q 013602 409 GYKPTTDLQTGLKKFVRWYL 428 (439)
Q Consensus 409 G~~p~~~l~e~l~~~v~~~~ 428 (439)
||+|+++++|+|+++++||+
T Consensus 293 G~~p~~~l~~~l~~~~~~~k 312 (312)
T 2yy7_A 293 DWKHTFDLESMTKDMIEHLS 312 (312)
T ss_dssp CCCCCCCHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999984
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=325.54 Aligned_cols=286 Identities=16% Similarity=0.163 Sum_probs=236.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+||||||+||||++++++|+ +|++|++++|+. .++.+|++|.+++.+++++.++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~--------------------~~~~~D~~d~~~~~~~~~~~~~d~vi 59 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHS--------------------KEFCGDFSNPKGVAETVRKLRPDVIV 59 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTC--------------------SSSCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEecccc--------------------ccccccCCCHHHHHHHHHhcCCCEEE
Confidence 589999999999999999999 899999999832 13578999999999999986669999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+||.........++...+++|+.|+.+++++|++.+. +||++||.++||.....+++|+++. .|.+.|+.+|+++|
T Consensus 60 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~vy~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 136 (299)
T 1n2s_A 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYSTDYVFPGTGDIPWQETDAT-SPLNVYGKTKLAGE 136 (299)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEEEGGGSCCCTTCCBCTTSCC-CCSSHHHHHHHHHH
T ss_pred ECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEecccEEeCCCCCCCCCCCCC-CCccHHHHHHHHHH
Confidence 99998655555678889999999999999999998874 8999999999998777788888766 67889999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchh
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
.+++++. .+++++||++||||+.. ..+..++..+..+..+..+ ++..++|+|++|+|++++.+++.+..
T Consensus 137 ~~~~~~~----~~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~~~~ 205 (299)
T 1n2s_A 137 KALQDNC----PKHLIFRTSWVYAGKGN--NFAKTMLRLAKERQTLSVI-----NDQYGAPTGAELLADCTAHAIRVALN 205 (299)
T ss_dssp HHHHHHC----SSEEEEEECSEECSSSC--CHHHHHHHHHHHCSEEEEE-----CSCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC----CCeEEEeeeeecCCCcC--cHHHHHHHHHhcCCCEEee-----cCcccCCeeHHHHHHHHHHHHHHhcc
Confidence 9998863 48999999999999764 4556677777778776664 24789999999999999999987631
Q ss_pred ccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcc------ccccccCC----CCCCCCcccCChHHHHHHcC
Q 013602 340 STGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKA------KRNIMKLP----RNGDVPFTHANISLAQRELG 409 (439)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~------~~~~~~~~----~~~~~~~~~~d~~k~~~~LG 409 (439)
.. ..+++||+++++++|+.|+++.+.+.+|.+. .+...+.. .........+|++|++++||
T Consensus 206 ~~---------~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 276 (299)
T 1n2s_A 206 KP---------EVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFD 276 (299)
T ss_dssp CG---------GGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHT
T ss_pred cc---------ccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHHhcC
Confidence 10 0128999999999999999999999998762 22222211 12234456789999999999
Q ss_pred CCccCcHHHHHHHHHHHHHHH
Q 013602 410 YKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 410 ~~p~~~l~e~l~~~v~~~~~~ 430 (439)
|+|+ +++|+|+++++||+++
T Consensus 277 ~~p~-~~~~~l~~~~~~~~~~ 296 (299)
T 1n2s_A 277 LILP-QWELGVKRMLTEMFTT 296 (299)
T ss_dssp CCCC-BHHHHHHHHHHHHHSC
T ss_pred CCCC-CHHHHHHHHHHHHHhc
Confidence 9998 8999999999999764
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-42 Score=329.50 Aligned_cols=296 Identities=22% Similarity=0.373 Sum_probs=222.9
Q ss_pred EEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---Ccc
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---SFT 176 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---~~d 176 (439)
+||||||+||||++++++|+++| ++|++++|...... .. . . .++. +.+|++|.+++++++++. ++|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~--~---~--~~~~-~~~d~~~~~~~~~~~~~~~~~~~d 70 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FV--N---L--VDLN-IADYMDKEDFLIQIMAGEEFGDVE 70 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GH--H---H--HTSC-CSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hh--h---c--Ccce-eccccccHHHHHHHHhccccCCCc
Confidence 48999999999999999999999 99999998553210 00 0 1 1233 778999999999999862 469
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~ 256 (439)
+|||+||.... ...++...+++|+.|+.+++++|++.+. +||++||.++||.....+++|+++. .|.+.|+.+|+
T Consensus 71 ~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~~sK~ 145 (310)
T 1eq2_A 71 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKF 145 (310)
T ss_dssp EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCSSGGGC-CCSSHHHHHHH
T ss_pred EEEECcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeHHHhCCCCCCCCCCCCCC-CCCChhHHHHH
Confidence 99999997543 4567888999999999999999999885 9999999999998776677777755 67889999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCC----CChHHHHHHHHHcCCCCceeecCCCCcc-eeeeeeHHHHHHHHH
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP----DMAYFFFTRDILNRKSIPIFESPDHGTV-ARDFTYIDDIVKGCL 331 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~i~v~Dva~a~~ 331 (439)
++|.+++++++++|++++++||++||||+... ...+..++..+..++.+.++ +++.. .++|+|++|+|++++
T Consensus 146 ~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~i~v~Dva~~~~ 222 (310)
T 1eq2_A 146 LFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF---EGSENFKRDFVYVGDVADVNL 222 (310)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC----------------CBCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEe---cCCCcceEccEEHHHHHHHHH
Confidence 99999999988889999999999999998642 24566777888888877665 46778 899999999999999
Q ss_pred HHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCC---CCCCcccCChHHHHHHc
Q 013602 332 AALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN---GDVPFTHANISLAQREL 408 (439)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~k~~~~L 408 (439)
.+++.+. +++||+++++++|+.|+++.+.+.+|.+ .+...+.+.. .......+|.+|+++ |
T Consensus 223 ~~~~~~~--------------~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 286 (310)
T 1eq2_A 223 WFLENGV--------------SGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-A 286 (310)
T ss_dssp HHHHHCC--------------CEEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHH-T
T ss_pred HHHhcCC--------------CCeEEEeCCCccCHHHHHHHHHHHcCCC-CceeCCCChhhhcccccccccchHHHHh-c
Confidence 9998654 1899999999999999999999999976 3444443331 122345678999965 9
Q ss_pred CC-CccCcHHHHHHHHHHHHHHH
Q 013602 409 GY-KPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 409 G~-~p~~~l~e~l~~~v~~~~~~ 430 (439)
|| .|.++++|+|+++++||+++
T Consensus 287 G~~~~~~~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 287 GYDKPFKTVAEGVTEYMAWLNRD 309 (310)
T ss_dssp TCCCCCCCHHHHHHHHHHHTC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 99 78889999999999999764
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-41 Score=326.78 Aligned_cols=292 Identities=22% Similarity=0.307 Sum_probs=233.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+|+||||||+||||++++++|+++|++|++++|+........ ....++.++.+|++|.+++.+++++.++|
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l-------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D 91 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHL-------KDHPNLTFVEGSIADHALVNQLIGDLQPD 91 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGS-------CCCTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhH-------hhcCCceEEEEeCCCHHHHHHHHhccCCc
Confidence 57899999999999999999999999999999999643211100 00147899999999999999999985569
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC----CCCCCCCCCCCCCCCCC-ChH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG----LNTKVPFSEKDRTDQPA-SLY 251 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g----~~~~~~~~e~~~~~~p~-~~Y 251 (439)
+||||||..... ...++. +++|+.++.+++++|++.+. ++||++||.++|| .... +++|++ .|. +.|
T Consensus 92 ~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~-~~iV~~SS~~~~g~~~~~~~~-~~~E~~---~p~~~~Y 163 (333)
T 2q1w_A 92 AVVHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNV-GRFVYFQTALCYGVKPIQQPV-RLDHPR---NPANSSY 163 (333)
T ss_dssp EEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTC-SEEEEEEEGGGGCSCCCSSSB-CTTSCC---CCTTCHH
T ss_pred EEEECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCC-CEEEEECcHHHhCCCcccCCC-CcCCCC---CCCCCch
Confidence 999999975442 223333 89999999999999999875 4999999999998 5544 777776 456 899
Q ss_pred HHHHHHHHHHHHH-HHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 252 AATKKAGEEIAHT-YNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 252 ~~sK~a~E~~~~~-~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
+.+|+++|.+++. +. +++++||+++|||+. ....+..++..+..+. .++ + +...++|+|++|+|+++
T Consensus 164 ~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~-~~~~~~~~~~~~~~~~--~~~---~-~~~~~~~i~v~Dva~ai 231 (333)
T 2q1w_A 164 AISKSANEDYLEYSGL-----DFVTFRLANVVGPRN-VSGPLPIFFQRLSEGK--KCF---V-TKARRDFVFVKDLARAT 231 (333)
T ss_dssp HHHHHHHHHHHHHHTC-----CEEEEEESEEESTTC-CSSHHHHHHHHHHTTC--CCE---E-EECEECEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhC-----CeEEEeeceEECcCC-cCcHHHHHHHHHHcCC--eee---C-CCceEeeEEHHHHHHHH
Confidence 9999999999988 64 889999999999983 2455666777777776 343 3 56789999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCC---CCCCcccCChHHHHHH
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN---GDVPFTHANISLAQRE 407 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~k~~~~ 407 (439)
+.+++.+. +++||++++.++|+.|+++.+.+.+|.+ .+.+.+.+.. .......+|++|+++.
T Consensus 232 ~~~~~~~~--------------g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 296 (333)
T 2q1w_A 232 VRAVDGVG--------------HGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRELGPDDAPSILLDPSRTIQDF 296 (333)
T ss_dssp HHHHTTCC--------------CEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEECCTTSCCCCCBCCHHHHHHH
T ss_pred HHHHhcCC--------------CCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCCcccccccccccCCHHHHHhc
Confidence 99987643 2899999999999999999999999987 4444433221 0114567899999988
Q ss_pred cCCCccCcHHHHHHHHHHHHHHHc
Q 013602 408 LGYKPTTDLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 408 LG~~p~~~l~e~l~~~v~~~~~~~ 431 (439)
||+|.++++|+|+++++||+++-
T Consensus 297 -G~~p~~~~~~~l~~~~~~~~~~~ 319 (333)
T 2q1w_A 297 -GKIEFTPLKETVAAAVAYFREYG 319 (333)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHHHC
T ss_pred -CCCcCCCHHHHHHHHHHHHHHHC
Confidence 99999999999999999998773
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=319.45 Aligned_cols=277 Identities=19% Similarity=0.203 Sum_probs=233.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.-|+|||||||||||++++++|+++|++|++++|+ .+|++|.+++.+++++.++|+
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------------~~Dl~d~~~~~~~~~~~~~d~ 66 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ------------------------DLDITNVLAVNKFFNEKKPNV 66 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT------------------------TCCTTCHHHHHHHHHHHCCSE
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc------------------------cCCCCCHHHHHHHHHhcCCCE
Confidence 34799999999999999999999999999999982 379999999999998656699
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a 257 (439)
|||+||......+..++...+++|+.|+.+++++|++.+. +||++||.++|+.....+++|+++. .|.+.|+.+|++
T Consensus 67 vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~SS~~v~~~~~~~~~~E~~~~-~~~~~Y~~sK~~ 143 (292)
T 1vl0_A 67 VINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQISTDYVFDGEAKEPITEFDEV-NPQSAYGKTKLE 143 (292)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCSCCSSCBCTTSCC-CCCSHHHHHHHH
T ss_pred EEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEechHHeECCCCCCCCCCCCCC-CCccHHHHHHHH
Confidence 9999997655445678889999999999999999999884 9999999999998776788888766 678899999999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
+|.+++++ +.+++++||+.|||| . ...+..++..+..+..+..+ ++..++|+|++|+|++++.+++.+
T Consensus 144 ~E~~~~~~----~~~~~~lR~~~v~G~-~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~~ 211 (292)
T 1vl0_A 144 GENFVKAL----NPKYYIVRTAWLYGD-G--NNFVKTMINLGKTHDELKVV-----HDQVGTPTSTVDLARVVLKVIDEK 211 (292)
T ss_dssp HHHHHHHH----CSSEEEEEECSEESS-S--SCHHHHHHHHHHHCSEEEEE-----SSCEECCEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHhh----CCCeEEEeeeeeeCC-C--cChHHHHHHHHhcCCcEEee-----cCeeeCCccHHHHHHHHHHHHhcC
Confidence 99999886 457999999999999 3 23555666666777766554 247899999999999999999864
Q ss_pred hhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCC----CCCCCCcccCChHHHHHHcCCCcc
Q 013602 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP----RNGDVPFTHANISLAQRELGYKPT 413 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~----~~~~~~~~~~d~~k~~~~LG~~p~ 413 (439)
.+ ++||+++++++|+.|+++.+.+.+|.+..+...+.. .........+|++|+++.|||+|+
T Consensus 212 ---~~-----------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 277 (292)
T 1vl0_A 212 ---NY-----------GTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR 277 (292)
T ss_dssp ---CC-----------EEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC
T ss_pred ---CC-----------cEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCCC
Confidence 11 899999999999999999999999987655443321 122344567899999999999999
Q ss_pred CcHHHHHHHHHHHHH
Q 013602 414 TDLQTGLKKFVRWYL 428 (439)
Q Consensus 414 ~~l~e~l~~~v~~~~ 428 (439)
+++|+|+++++||+
T Consensus 278 -~~~~~l~~~~~~~~ 291 (292)
T 1vl0_A 278 -EWKESLKEYIDLLQ 291 (292)
T ss_dssp -BHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHhc
Confidence 99999999999985
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=323.82 Aligned_cols=280 Identities=18% Similarity=0.178 Sum_probs=229.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+|+||||| +||||++++++|+++|++|++++|+.+. ...+++++.+|++|.+++.+++++ ++|+
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~-------------~~~~~~~~~~Dl~d~~~~~~~~~~-~~d~ 66 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQP-------------MPAGVQTLIADVTRPDTLASIVHL-RPEI 66 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSC-------------CCTTCCEEECCTTCGGGCTTGGGG-CCSE
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCccc-------------cccCCceEEccCCChHHHHHhhcC-CCCE
Confidence 468999999 5999999999999999999999995542 136899999999999999999986 4599
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a 257 (439)
|||+||.. ..++...+++|+.++.+++++|++.+.. +||++||.++||.....+++|+++. .|.+.|+.+|++
T Consensus 67 vih~a~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~~ 139 (286)
T 3gpi_A 67 LVYCVAAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVSSTGVYGQEVEEWLDEDTPP-IAKDFSGKRMLE 139 (286)
T ss_dssp EEECHHHH-----HHC-----CCSHHHHHHHHHHTTTSCCC-EEEEEEEGGGCCCCCSSEECTTSCC-CCCSHHHHHHHH
T ss_pred EEEeCCCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEcccEEEcCCCCCCCCCCCCC-CCCChhhHHHHH
Confidence 99999863 2556778899999999999999988754 9999999999998887788888876 688999999999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
+|.+ +++ ++++++||++||||+.. .++..+.+ .. .+ +.++..++|+|++|+|++++.+++.+
T Consensus 140 ~E~~-~~~-----~~~~ilR~~~v~G~~~~------~~~~~~~~-~~--~~---~~~~~~~~~i~v~Dva~~~~~~~~~~ 201 (286)
T 3gpi_A 140 AEAL-LAA-----YSSTILRFSGIYGPGRL------RMIRQAQT-PE--QW---PARNAWTNRIHRDDGAAFIAYLIQQR 201 (286)
T ss_dssp HHHH-GGG-----SSEEEEEECEEEBTTBC------HHHHHTTC-GG--GS---CSSBCEECEEEHHHHHHHHHHHHHHH
T ss_pred HHHH-Hhc-----CCeEEEecccccCCCch------hHHHHHHh-cc--cC---CCcCceeEEEEHHHHHHHHHHHHhhh
Confidence 9999 553 89999999999999865 34455554 22 22 47788999999999999999999875
Q ss_pred hhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCccC-cH
Q 013602 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTT-DL 416 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~-~l 416 (439)
... ..+++||+++++++|+.|+++.+.+.+|.+.++...+ .......+|++|++ +|||+|++ ++
T Consensus 202 ~~~----------~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----~~~~~~~~d~~k~~-~lG~~p~~~~l 266 (286)
T 3gpi_A 202 SHA----------VPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP----PVQGNKKLSNARLL-ASGYQLIYPDY 266 (286)
T ss_dssp TTS----------CCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC----CBCSSCEECCHHHH-HTTCCCSSCSH
T ss_pred ccC----------CCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc----ccCCCeEeeHHHHH-HcCCCCcCCcH
Confidence 311 1238999999999999999999999999876654332 34556678999997 99999998 69
Q ss_pred HHHHHHHHHHHHHHcc
Q 013602 417 QTGLKKFVRWYLSYYA 432 (439)
Q Consensus 417 ~e~l~~~v~~~~~~~~ 432 (439)
+|+|+++++|+...++
T Consensus 267 ~e~l~~~~~~~~~~~~ 282 (286)
T 3gpi_A 267 VSGYGALLAAMREGHH 282 (286)
T ss_dssp HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999977654
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=319.81 Aligned_cols=305 Identities=19% Similarity=0.239 Sum_probs=237.4
Q ss_pred EEEEECCCChHHHHHHHHHHhC--CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRR--GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+||||||+||||++++++|+++ |++|++++|..... .++.++.+|++|.+++.++++..++|+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--------------~~~~~~~~D~~d~~~~~~~~~~~~~d~v 66 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT--------------GGIKFITLDVSNRDEIDRAVEKYSIDAI 66 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC--------------TTCCEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc--------------cCceEEEecCCCHHHHHHHHhhcCCcEE
Confidence 4899999999999999999998 89999999854321 1567899999999999999986567999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-CCCCCCCCCCCCCCChHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT-KVPFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~-~~~~~e~~~~~~p~~~Y~~sK~a 257 (439)
||+||.... ....++...+++|+.|+.+++++|++.+.. +||++||.++|+... ..+..|+.+. .|.+.|+.+|++
T Consensus 67 ih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~-~p~~~Y~~sK~~ 143 (317)
T 3ajr_A 67 FHLAGILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPSTIGVFGPETPKNKVPSITIT-RPRTMFGVTKIA 143 (317)
T ss_dssp EECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCTTSCSSSBCSSSCC-CCCSHHHHHHHH
T ss_pred EECCcccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCCCCCCccccccC-CCCchHHHHHHH
Confidence 999997432 234677889999999999999999998854 999999999998653 2345555544 678999999999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHH
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAA 333 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 333 (439)
+|.+++.+.+++|++++++||+.+||+...+. .....++...+.++....+ ++++..++|+|++|+|++++.+
T Consensus 144 ~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~ 220 (317)
T 3ajr_A 144 AELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCY---LAPNRALPMMYMPDALKALVDL 220 (317)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEEC---SCTTCCEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceee---cCccceeeeeEHHHHHHHHHHH
Confidence 99999999888899999999999999764322 1222233334455554443 4667889999999999999999
Q ss_pred HhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCC--CCCCcccCChHHHHHHcCCC
Q 013602 334 LDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN--GDVPFTHANISLAQRELGYK 411 (439)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~--~~~~~~~~d~~k~~~~LG~~ 411 (439)
++.+.... ..+++||+++ ..+|+.|+++.+.+.+|. ..+.+.+.... .......+|++|++++|||+
T Consensus 221 l~~~~~~~---------~~g~~~~i~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 289 (317)
T 3ajr_A 221 YEADRDKL---------VLRNGYNVTA-YTFTPSELYSKIKERIPE-FEIEYKEDFRDKIAATWPESLDSSEASNEWGFS 289 (317)
T ss_dssp HHCCGGGC---------SSCSCEECCS-EEECHHHHHHHHHTTCCS-CCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCC
T ss_pred HhCCcccc---------ccCceEecCC-ccccHHHHHHHHHHHCCc-cccccccccchhhccccccccCHHHHHHHcCCC
Confidence 98654321 1237999986 679999999999999883 23322221000 01112457999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHccCCCC
Q 013602 412 PTTDLQTGLKKFVRWYLSYYAGGKK 436 (439)
Q Consensus 412 p~~~l~e~l~~~v~~~~~~~~~~~~ 436 (439)
|.++++|+|+++++||+++.....+
T Consensus 290 p~~~~~~~l~~~~~~~~~~~~~~g~ 314 (317)
T 3ajr_A 290 IEYDLDRTIDDMIDHISEKLGIEGK 314 (317)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCCHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999998876554
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=348.12 Aligned_cols=324 Identities=27% Similarity=0.373 Sum_probs=246.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+.+|+||||||+||||++++++|+++|++|++++|........... .......++.++.+|++|.+++.++++..++|
T Consensus 9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D 86 (699)
T 1z45_A 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVAR--LEVLTKHHIPFYEVDLCDRKGLEKVFKEYKID 86 (699)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHH--HHHHHTSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHH--HhhccCCceEEEEcCCCCHHHHHHHHHhCCCC
Confidence 5678999999999999999999999999999999965433222211 11223467899999999999999999865669
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC----CCCCCCCCCCCCCCChHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT----KVPFSEKDRTDQPASLYA 252 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~----~~~~~e~~~~~~p~~~Y~ 252 (439)
+|||+||........+++...+++|+.|+.++++++++.+.. +||++||.++||... ..++.|+++. .|.+.|+
T Consensus 87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~SS~~vyg~~~~~~~~~~~~E~~~~-~p~~~Y~ 164 (699)
T 1z45_A 87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYG 164 (699)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTTCCSBCTTSCC-CCCSHHH
T ss_pred EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECcHHHhCCCccccccCCccccCCC-CCCChHH
Confidence 999999976544445567789999999999999999988854 999999999998643 2456676655 6778999
Q ss_pred HHHHHHHHHHHHHHhH--hCCcEEEEeeccccCCCCC----------CCChHHHHHHHHHcC--CCCceeec---CCCCc
Q 013602 253 ATKKAGEEIAHTYNHI--YGLSLTGLRFFTVYGPWGR----------PDMAYFFFTRDILNR--KSIPIFES---PDHGT 315 (439)
Q Consensus 253 ~sK~a~E~~~~~~~~~--~gi~~~ilrpg~v~G~~~~----------~~~~~~~~~~~~~~g--~~~~~~~~---~~~~~ 315 (439)
.+|+++|.++++++.+ .+++++++||++||||+.. +..++..+.. +..+ .++.++.. ..++.
T Consensus 165 ~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~g~ 243 (699)
T 1z45_A 165 HTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQ-VAVGRREKLYIFGDDYDSRDGT 243 (699)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHH-HHTTSSSCCCCC------CCSS
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHH-HHhcCCCceEEeCCcccCCCCC
Confidence 9999999999999876 6999999999999998531 1233443333 3333 45555420 01577
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVP 395 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~ 395 (439)
..++|+|++|+|++++.+++....... ....+++||+++++++|+.|+++.+.+.+|.+.++...+. ...+..
T Consensus 244 ~~~~~i~v~Dva~a~~~a~~~~~~~~~------~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~ 316 (699)
T 1z45_A 244 PIRDYIHVVDLAKGHIAALQYLEAYNE------NEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR-RAGDVL 316 (699)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHHHSCT------TCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC----------CC
T ss_pred eeEeeEEHHHHHHHHHHHHhhhhcccc------ccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCC-CCCccc
Confidence 899999999999999999876432100 0012379999999999999999999999998766544432 234455
Q ss_pred cccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 396 FTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 396 ~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
...+|++|++++|||+|.++++|+|+++++||+++..
T Consensus 317 ~~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~~ 353 (699)
T 1z45_A 317 NLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPF 353 (699)
T ss_dssp CCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred cccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 6789999999999999999999999999999987643
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=347.46 Aligned_cols=312 Identities=23% Similarity=0.344 Sum_probs=252.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHH-HHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMAL-LKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-~~~~~~~~~ 174 (439)
+.+|+||||||+||||++++++|+++ |++|++++|+..... ......++.++.+|++|.++ ++++++++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~--------~~~~~~~v~~v~~Dl~d~~~~~~~~~~~~- 383 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS--------RFLNHPHFHFVEGDISIHSEWIEYHVKKC- 383 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTG--------GGTTCTTEEEEECCTTTCHHHHHHHHHHC-
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhh--------hhccCCceEEEECCCCCcHHHHHHhhcCC-
Confidence 46789999999999999999999998 899999999654321 11124579999999999765 78888876
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC------CCCC
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT------DQPA 248 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~------~~p~ 248 (439)
|+|||+||.........++...+++|+.|+.+++++|++.+ ++||++||.++||.....+++|+++. ..|.
T Consensus 384 -D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~ 460 (660)
T 1z7e_A 384 -DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPR 460 (660)
T ss_dssp -SEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTT
T ss_pred -CEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEecHHHcCCCCCcccCCCccccccCcccCCC
Confidence 99999999865544456788899999999999999999987 49999999999998776677777642 1345
Q ss_pred ChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC--------CChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 249 SLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP--------DMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 249 ~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
+.|+.+|+++|.+++++++++|++++++|||+||||+... ...+..++..+..+.++.++ ++++..++|
T Consensus 461 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~g~~~~~~ 537 (660)
T 1z7e_A 461 WIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCF 537 (660)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEE---GGGCCEEEC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEe---CCCCeEEEE
Confidence 6899999999999999988889999999999999998642 34566777788888887666 467889999
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC-cccHHHHHHHHHHHhCCccccccccCC----------
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS-PVPVSDLVSILERLLKVKAKRNIMKLP---------- 389 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~t~~el~~~l~~~~g~~~~~~~~~~~---------- 389 (439)
+|++|+|++++.+++.+... ..+++||+++++ ++|+.|+++.+.+.+|.+......+..
T Consensus 538 i~v~Dva~ai~~~l~~~~~~----------~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~ 607 (660)
T 1z7e_A 538 TDIRDGIEALYRIIENAGNR----------CDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSS 607 (660)
T ss_dssp EEHHHHHHHHHHHHHCGGGT----------TTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHH
T ss_pred EEHHHHHHHHHHHHhCcccc----------CCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccc
Confidence 99999999999999865421 123899999986 899999999999999865332222211
Q ss_pred ----CCCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 390 ----RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 390 ----~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
...+.....+|++|++++|||+|.++++|+|+++++||+++...
T Consensus 608 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~~ 655 (660)
T 1z7e_A 608 YYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 655 (660)
T ss_dssp HHCTTCCCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSCC
T ss_pred cccccccchhhcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhccc
Confidence 01233456789999999999999999999999999999988653
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=320.72 Aligned_cols=292 Identities=17% Similarity=0.205 Sum_probs=207.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|+||||||+||||++++++|+++|++|++++|+... ++ ++.+|++|.+++.+++++.++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------------~~--~~~~Dl~d~~~~~~~~~~~~~d~v 64 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR---------------PK--FEQVNLLDSNAVHHIIHDFQPHVI 64 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CHHHHHHHCCSEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC---------------CC--eEEecCCCHHHHHHHHHhhCCCEE
Confidence 5799999999999999999999999999999983221 12 788999999999999987667999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
|||||......+..++...+++|+.|+.+++++|++.+. +||++||.++|+. ...+++|+++. .|.+.|+.+|+++
T Consensus 65 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~~~-~~~~~~E~~~~-~~~~~Y~~sK~~~ 140 (315)
T 2ydy_A 65 VHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYISSDYVFDG-TNPPYREEDIP-APLNLYGKTKLDG 140 (315)
T ss_dssp EECC-------------------CHHHHHHHHHHHHHTC--EEEEEEEGGGSCS-SSCSBCTTSCC-CCCSHHHHHHHHH
T ss_pred EECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEchHHHcCC-CCCCCCCCCCC-CCcCHHHHHHHHH
Confidence 999998655445677888999999999999999999874 9999999999987 55678887765 6788999999999
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCC-ChHHHHHHHHH-cCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhh
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD-MAYFFFTRDIL-NRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~-~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
|.+++.+ ++++++|||+.||||...+. ..+..++..+. .+..+... +...++|+|++|+|++++.++..
T Consensus 141 e~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~a~~~~~~~ 211 (315)
T 2ydy_A 141 EKAVLEN----NLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMD-----HWQQRFPTHVKDVATVCRQLAEK 211 (315)
T ss_dssp HHHHHHH----CTTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEE-----CSSBBCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHh----CCCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeec-----cCceECcEEHHHHHHHHHHHHHh
Confidence 9999886 67889999999999976521 23334555566 66655442 35778999999999999999876
Q ss_pred chhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccc-cccccC-C--CCCCCCcccCChHHHHHHcCCCc
Q 013602 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK-RNIMKL-P--RNGDVPFTHANISLAQRELGYKP 412 (439)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-~~~~~~-~--~~~~~~~~~~d~~k~~~~LG~~p 412 (439)
..... ..+++||+++++++|+.|+++.+.+.+|.+.. +...+. + .........+|++|+++. ||+|
T Consensus 212 ~~~~~---------~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p 281 (315)
T 2ydy_A 212 RMLDP---------SIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL-GIGQ 281 (315)
T ss_dssp HHTCT---------TCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHT-TCCC
T ss_pred hcccc---------CCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhc-CCCC
Confidence 52100 12389999999999999999999999998754 222221 1 112334567899999888 9999
Q ss_pred cCcHHHHHHHHHHHHHHH
Q 013602 413 TTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 413 ~~~l~e~l~~~v~~~~~~ 430 (439)
.++++|+|+++++||.++
T Consensus 282 ~~~~~~~l~~~~~~~~~~ 299 (315)
T 2ydy_A 282 RTPFRIGIKESLWPFLID 299 (315)
T ss_dssp CCCHHHHHHHHHGGGCC-
T ss_pred CCCHHHHHHHHHHHHccc
Confidence 999999999999999776
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-39 Score=313.98 Aligned_cols=306 Identities=17% Similarity=0.153 Sum_probs=240.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-------CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-------DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~ 169 (439)
+++|+||||||+||||++++++|+++| ++|++++|+...... ....++.++.+|++|.+++.++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~ 82 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA---------GFSGAVDARAADLSAPGEAEKL 82 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT---------TCCSEEEEEECCTTSTTHHHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc---------ccCCceeEEEcCCCCHHHHHHH
Confidence 577899999999999999999999999 899999996543221 1235788999999999999999
Q ss_pred hcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC----CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 170 FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN----PQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 170 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~----~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++. ++|+||||||... ..+.+++...+++|+.|+.+++++|++.+ ..++||++||.++|+.....+++|+++.
T Consensus 83 ~~~-~~d~vih~A~~~~-~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~- 159 (342)
T 2hrz_A 83 VEA-RPDVIFHLAAIVS-GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHT- 159 (342)
T ss_dssp HHT-CCSEEEECCCCCH-HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTCCC-
T ss_pred Hhc-CCCEEEECCccCc-ccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCCCC-
Confidence 852 4599999999743 23456788899999999999999998875 2349999999999997655678888766
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccC-CCCCCC---ChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYG-PWGRPD---MAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G-~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
.|.+.|+.+|+++|.+++++.++.+++.+++|++.||| |+.... .++..++..++.+....+. .+++..++++
T Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 236 (342)
T 2hrz_A 160 TPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLP---VPESIRHWHA 236 (342)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEEC---SCTTCEEEEE
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeecc---CCCccceeeE
Confidence 67889999999999999999887789999999999998 654321 2445667777778765543 3456778899
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccc--cccccCCCCC---CCCc
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK--RNIMKLPRNG---DVPF 396 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~--~~~~~~~~~~---~~~~ 396 (439)
|++|+|++++.+++.+.... ..+++||++ ++++|+.|+++.+.+.+|.+.. +...+.+... ....
T Consensus 237 ~v~Dva~~~~~~~~~~~~~~---------~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 306 (342)
T 2hrz_A 237 SPRSAVGFLIHGAMIDVEKV---------GPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWA 306 (342)
T ss_dssp CHHHHHHHHHHHHHSCHHHH---------CSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSC
T ss_pred ehHHHHHHHHHHHhcccccc---------CCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcccc
Confidence 99999999999988654210 012799996 5779999999999999997642 2222211100 1111
Q ss_pred ccCChHHHHHHcCCCccCcHHHHHHHHHHHHH
Q 013602 397 THANISLAQRELGYKPTTDLQTGLKKFVRWYL 428 (439)
Q Consensus 397 ~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~ 428 (439)
..+|++|+++ |||+|.++++|+|+++++||+
T Consensus 307 ~~~d~~k~~~-lG~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 307 PGFEAKRARE-LGFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp CCBCCHHHHH-TTCCCCSSHHHHHHHHHHHHS
T ss_pred cccChHHHHH-cCCCCCCCHHHHHHHHHHHhc
Confidence 2579999988 999999999999999999996
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=314.77 Aligned_cols=302 Identities=18% Similarity=0.162 Sum_probs=230.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh---hcCCeEEE-EcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---ERSGIFIV-EGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~-~~Dl~d~~~~~~~~~~ 172 (439)
+.+|+||||||+||||++++++|+++|++|++++|+.. ......... ...++.++ .+|++|.+++.+++++
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 83 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSAS-----KLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKG 83 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcc-----cHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcC
Confidence 67899999999999999999999999999999999332 111111111 12578888 8999999999999986
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC----CCCCCCCC-----
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTK----VPFSEKDR----- 243 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~----~~~~e~~~----- 243 (439)
+ |+||||||..... .++...+++|+.|+.+++++|.+....++||++||.++|+.... .+++|+++
T Consensus 84 ~--d~vih~A~~~~~~---~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~ 158 (342)
T 1y1p_A 84 A--AGVAHIASVVSFS---NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESI 158 (342)
T ss_dssp C--SEEEECCCCCSCC---SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHH
T ss_pred C--CEEEEeCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhh
Confidence 5 9999999975432 56788999999999999999985332359999999999864321 45667652
Q ss_pred ----------CCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCC---hHHHHHHHHHcCCCCcee
Q 013602 244 ----------TDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDM---AYFFFTRDILNRKSIPIF 308 (439)
Q Consensus 244 ----------~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~---~~~~~~~~~~~g~~~~~~ 308 (439)
+..|.+.|+.+|+++|.+++.+.+++ +++++++||++||||...+.. .+..++..++.+....++
T Consensus 159 ~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (342)
T 1y1p_A 159 DKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL 238 (342)
T ss_dssp HHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCcccc
Confidence 11345789999999999999998876 789999999999999865432 667788888888887655
Q ss_pred ecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccC
Q 013602 309 ESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL 388 (439)
Q Consensus 309 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~ 388 (439)
. .+ ..++|+|++|+|++++.+++.+.. .++.+ ++++.++|+.|+++.+.+.+|.+ .+.. +.
T Consensus 239 ~---~~-~~~~~v~v~Dva~a~~~~~~~~~~------------~g~~~-~~~g~~~s~~e~~~~i~~~~~~~-~~~~-~~ 299 (342)
T 1y1p_A 239 A---LM-PPQYYVSAVDIGLLHLGCLVLPQI------------ERRRV-YGTAGTFDWNTVLATFRKLYPSK-TFPA-DF 299 (342)
T ss_dssp H---TC-CSEEEEEHHHHHHHHHHHHHCTTC------------CSCEE-EECCEEECHHHHHHHHHHHCTTS-CCCC-CC
T ss_pred c---cC-CcCCEeEHHHHHHHHHHHHcCccc------------CCceE-EEeCCCCCHHHHHHHHHHHCCCc-cCCC-CC
Confidence 2 33 678999999999999999876432 12344 34567899999999999999965 2211 11
Q ss_pred CCCCCCCcccCChHHHHHHcCC---CccCcHHHHHHHHHHHHH
Q 013602 389 PRNGDVPFTHANISLAQRELGY---KPTTDLQTGLKKFVRWYL 428 (439)
Q Consensus 389 ~~~~~~~~~~~d~~k~~~~LG~---~p~~~l~e~l~~~v~~~~ 428 (439)
+.. ......+|++|+++.||| .+.++++|+|+++++||+
T Consensus 300 ~~~-~~~~~~~d~~k~~~~lg~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 300 PDQ-GQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp CCC-CCCCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred Ccc-ccccccCChHHHHHHHhhcccCCcCCHHHHHHHHHHHhh
Confidence 111 122356799999999887 455699999999999874
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=307.77 Aligned_cols=296 Identities=16% Similarity=0.115 Sum_probs=232.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCC-----CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRG-----DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+|+|||||||||||++++++|+++| ++|++++|+..... ....+++++.+|++|.+++.+++++.
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~----------~~~~~~~~~~~Dl~d~~~~~~~~~~~ 70 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW----------HEDNPINYVQCDISDPDDSQAKLSPL 70 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC----------CCSSCCEEEECCTTSHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc----------cccCceEEEEeecCCHHHHHHHHhcC
Confidence 4789999999999999999999999 99999999665322 12357899999999999999999985
Q ss_pred C-ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhc--CCCCeEE-------EecCCcccCCC--CCCCCCCC
Q 013602 174 S-FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA--NPQPAIV-------WASSSSVYGLN--TKVPFSEK 241 (439)
Q Consensus 174 ~-~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~--~~~~~~V-------~~SS~~v~g~~--~~~~~~e~ 241 (439)
+ +|+|||+||... .++...+++|+.|+.+++++|++. +. ++|| ++||.++||.. ...++.|+
T Consensus 71 ~~~d~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~-~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~ 144 (364)
T 2v6g_A 71 TDVTHVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNL-KHISLQTGRKHYMGPFESYGKIESHDPPYTED 144 (364)
T ss_dssp TTCCEEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTC-CEEEEECCTHHHHCCGGGTTTSCCCCSSBCTT
T ss_pred CCCCEEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhcccc-ceEEeccCceEEEechhhccccccCCCCCCcc
Confidence 5 699999999742 567889999999999999999987 54 4887 89999999975 34577787
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHhC-CcEEEEeeccccCCCCCCC--ChHHH-HHHHH--HcCCCCceeecCCCC-
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIYG-LSLTGLRFFTVYGPWGRPD--MAYFF-FTRDI--LNRKSIPIFESPDHG- 314 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~g-i~~~ilrpg~v~G~~~~~~--~~~~~-~~~~~--~~g~~~~~~~~~~~~- 314 (439)
++...+.+.| +++|.+++++.++++ ++++++||++||||+.... ..... +...+ ..|.++.++ +++
T Consensus 145 ~~~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~ 217 (364)
T 2v6g_A 145 LPRLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFT---GCKA 217 (364)
T ss_dssp SCCCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCC---SCHH
T ss_pred ccCCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecC---CCcc
Confidence 7653335678 468999998887677 9999999999999987532 22333 23334 357666554 455
Q ss_pred --cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccc--cccCC-
Q 013602 315 --TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN--IMKLP- 389 (439)
Q Consensus 315 --~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~--~~~~~- 389 (439)
....++++++|+|++++.+++.+.. .+++||+++++++|+.|+++.+.+.+|.+.... ..|.+
T Consensus 218 ~~~~~~~~~~v~Dva~a~~~~~~~~~~------------~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~ 285 (364)
T 2v6g_A 218 AWDGYSDCSDADLIAEHHIWAAVDPYA------------KNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKL 285 (364)
T ss_dssp HHHSCBCCEEHHHHHHHHHHHHHCGGG------------TTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCH
T ss_pred cccccCCCCcHHHHHHHHHHHHhCCCC------------CCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccH
Confidence 3457888999999999999986542 237999999999999999999999999765432 22221
Q ss_pred --------------------CCC---CC-----------Cc-ccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 390 --------------------RNG---DV-----------PF-THANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 390 --------------------~~~---~~-----------~~-~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
... .. .. ..+|++|+++ |||+|.++++|+|+++++||+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~ 360 (364)
T 2v6g_A 286 QDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAY 360 (364)
T ss_dssp HHHTTTCHHHHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHc
Confidence 000 10 22 4789999987 99999999999999999999875
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-39 Score=312.80 Aligned_cols=307 Identities=16% Similarity=0.188 Sum_probs=215.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|+||||||+||||++|+++|+++|++|+++.|+.+........ .......+++++.+|++|.+++.++++++ |+|
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--D~V 84 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHL--LELQELGDLKIFRADLTDELSFEAPIAGC--DFV 84 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHH--HHHGGGSCEEEEECCTTTSSSSHHHHTTC--SEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHH--HhcCCCCcEEEEecCCCChHHHHHHHcCC--CEE
Confidence 68999999999999999999999999999999965432221111 11112357899999999999999999877 999
Q ss_pred EEcccccCccccccCh-hHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc-ccCCCC---CCCCCCCCCCC-------C
Q 013602 179 MHLAAQAGVRYAMQNP-NSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS-VYGLNT---KVPFSEKDRTD-------Q 246 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~-~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~-v~g~~~---~~~~~e~~~~~-------~ 246 (439)
||+||.... ...++ ...+++|+.|+.+++++|++.+..++||++||.+ +|+... ..+++|+++.. .
T Consensus 85 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (338)
T 2rh8_A 85 FHVATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAK 162 (338)
T ss_dssp EEESSCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------
T ss_pred EEeCCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccC
Confidence 999986422 22334 3488999999999999999886335999999976 443211 12566665321 1
Q ss_pred C-CChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChH-HHHHHHHHcCCCCceeecCC---CCcceeeee
Q 013602 247 P-ASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAY-FFFTRDILNRKSIPIFESPD---HGTVARDFT 321 (439)
Q Consensus 247 p-~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~---~~~~~~~~i 321 (439)
| ...|+.+|.++|.+++++.+++|+++++|||++||||+....... ...+...+.|... .+.... .+...++|+
T Consensus 163 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~i 241 (338)
T 2rh8_A 163 PPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEF-LINGMKGMQMLSGSVSIA 241 (338)
T ss_dssp CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHH-HHHHHHHHHHHHSSEEEE
T ss_pred CccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcc-ccccccccccccCcccEE
Confidence 1 226999999999999998877899999999999999976533211 1111222444432 111000 011234899
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCC-ccccccccCCCCCCCCcccCC
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKV-KAKRNIMKLPRNGDVPFTHAN 400 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~d 400 (439)
|++|+|++++.+++.+.. ++.|++++ ..+|+.|+++.+.+.++. +.+....+ ...+ ....+|
T Consensus 242 ~v~Dva~a~~~~~~~~~~-------------~~~~~~~~-~~~s~~e~~~~l~~~~~~~~~~~~~~~--~~~~-~~~~~d 304 (338)
T 2rh8_A 242 HVEDVCRAHIFVAEKESA-------------SGRYICCA-ANTSVPELAKFLSKRYPQYKVPTDFGD--FPPK-SKLIIS 304 (338)
T ss_dssp EHHHHHHHHHHHHHCTTC-------------CEEEEECS-EEECHHHHHHHHHHHCTTSCCCCCCTT--SCSS-CSCCCC
T ss_pred EHHHHHHHHHHHHcCCCc-------------CCcEEEec-CCCCHHHHHHHHHHhCCCCCCCCCCCC--CCcC-cceeec
Confidence 999999999999875331 15788876 468999999999998762 22211111 1111 226789
Q ss_pred hHHHHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 401 ISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 401 ~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
++|+ ++|||+|+++++|+|+++++||+++
T Consensus 305 ~~k~-~~lG~~p~~~l~~gl~~~~~~~~~~ 333 (338)
T 2rh8_A 305 SEKL-VKEGFSFKYGIEEIYDESVEYFKAK 333 (338)
T ss_dssp CHHH-HHHTCCCSCCHHHHHHHHHHHHHHT
T ss_pred hHHH-HHhCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999 6799999999999999999999865
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-38 Score=305.05 Aligned_cols=303 Identities=17% Similarity=0.223 Sum_probs=217.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh--cCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE--RSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
++|+||||||+||||++++++|+++|++|++++|+..... ......... ..+++++.+|++|.+++.++++++
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 78 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVK---KVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGC-- 78 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHH---HHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTC--
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhH---HHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCC--
Confidence 5689999999999999999999999999999998543210 000000111 135889999999999999999877
Q ss_pred cEEEEcccccCccccccChh-HHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc-ccCCCC-CCCCCCCCCCC-------
Q 013602 176 THVMHLAAQAGVRYAMQNPN-SYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS-VYGLNT-KVPFSEKDRTD------- 245 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~-~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~-v~g~~~-~~~~~e~~~~~------- 245 (439)
|+|||+|+... ....++. ..+++|+.|+.+++++|++.+..++||++||.+ +|+... ..+++|+++..
T Consensus 79 d~Vih~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 156 (337)
T 2c29_D 79 TGVFHVATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAK 156 (337)
T ss_dssp SEEEECCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHH
T ss_pred CEEEEeccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhccc
Confidence 99999998642 2223443 589999999999999999887335999999987 555322 22355554321
Q ss_pred -CCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHH--HHHcCCCCceeecCCCCcceeeeee
Q 013602 246 -QPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTR--DILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 -~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.+.+.|+.+|+++|.++.++.+++|+++++|||++||||+...... ..+.. ..+.|... .+. . .....|+|
T Consensus 157 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~-~~~~~~~~~~~g~~~-~~~---~-~~~~~~i~ 230 (337)
T 2c29_D 157 KMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMP-PSLITALSPITGNEA-HYS---I-IRQGQFVH 230 (337)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCC-HHHHHHTHHHHTCGG-GHH---H-HTEEEEEE
T ss_pred CCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCC-chHHHHHHHHcCCCc-ccc---c-cCCCCEEE
Confidence 1345799999999999999887789999999999999998653321 11111 12344332 221 1 12345999
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCC-ccccccccCCCCCCCCcccCCh
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKV-KAKRNIMKLPRNGDVPFTHANI 401 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~d~ 401 (439)
++|+|++++.+++.+.. ++.|++++ ..+|+.|+++.+.+.++. +.+..+.+ ...+.....+|+
T Consensus 231 v~Dva~a~~~~~~~~~~-------------~~~~~~~~-~~~s~~e~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~d~ 294 (337)
T 2c29_D 231 LDDLCNAHIYLFENPKA-------------EGRYICSS-HDCIILDLAKMLREKYPEYNIPTEFKG--VDENLKSVCFSS 294 (337)
T ss_dssp HHHHHHHHHHHHHCTTC-------------CEEEEECC-EEEEHHHHHHHHHHHCTTSCCCSCCTT--CCTTCCCCEECC
T ss_pred HHHHHHHHHHHhcCccc-------------CceEEEeC-CCCCHHHHHHHHHHHCCCccCCCCCCc--ccCCCccccccH
Confidence 99999999999875321 15677655 568999999999998742 22211111 122334566899
Q ss_pred HHHHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 402 SLAQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 402 ~k~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
+|+ ++|||+|+++++|+|+++++||++.
T Consensus 295 ~k~-~~lG~~p~~~l~e~l~~~~~~~~~~ 322 (337)
T 2c29_D 295 KKL-TDLGFEFKYSLEDMFTGAVDTCRAK 322 (337)
T ss_dssp HHH-HHHTCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHH-HHcCCCcCCCHHHHHHHHHHHHHHc
Confidence 999 8899999999999999999999876
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=300.37 Aligned_cols=269 Identities=19% Similarity=0.186 Sum_probs=214.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|+|||||| ||||++++++|+++|++|++++|+... .......+++++.+|++|.+ ++++ |+|
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~~~~~~D~~d~~-----~~~~--d~v 67 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQ---------MEAIRASGAEPLLWPGEEPS-----LDGV--THL 67 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGG---------HHHHHHTTEEEEESSSSCCC-----CTTC--CEE
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhh---------hhhHhhCCCeEEEecccccc-----cCCC--CEE
Confidence 479999998 999999999999999999999994321 11222368999999999944 5555 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHh--cCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKN--ANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~--~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~ 256 (439)
||+|+..... ++ .+.++++++++ .+. ++||++||.++||.....+++|+++. .|.+.|+.+|+
T Consensus 68 i~~a~~~~~~----~~---------~~~~l~~a~~~~~~~~-~~~v~~Ss~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~ 132 (286)
T 3ius_A 68 LISTAPDSGG----DP---------VLAALGDQIAARAAQF-RWVGYLSTTAVYGDHDGAWVDETTPL-TPTAARGRWRV 132 (286)
T ss_dssp EECCCCBTTB----CH---------HHHHHHHHHHHTGGGC-SEEEEEEEGGGGCCCTTCEECTTSCC-CCCSHHHHHHH
T ss_pred EECCCccccc----cH---------HHHHHHHHHHhhcCCc-eEEEEeecceecCCCCCCCcCCCCCC-CCCCHHHHHHH
Confidence 9999974321 11 25789999988 554 49999999999998887788888876 67899999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhh
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
++|.+++++ .|++++++||++||||+... +..+.++....+. .+...++|+|++|+|++++.+++.
T Consensus 133 ~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~-------~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~a~~~~~~~ 198 (286)
T 3ius_A 133 MAEQQWQAV---PNLPLHVFRLAGIYGPGRGP-------FSKLGKGGIRRII----KPGQVFSRIHVEDIAQVLAASMAR 198 (286)
T ss_dssp HHHHHHHHS---TTCCEEEEEECEEEBTTBSS-------STTSSSSCCCEEE----CTTCCBCEEEHHHHHHHHHHHHHS
T ss_pred HHHHHHHhh---cCCCEEEEeccceECCCchH-------HHHHhcCCccccC----CCCcccceEEHHHHHHHHHHHHhC
Confidence 999999987 59999999999999998653 1234556666664 345789999999999999999987
Q ss_pred chhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccccccc-CCCCCC------CCcccCChHHHHHHcC
Q 013602 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK-LPRNGD------VPFTHANISLAQRELG 409 (439)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~-~~~~~~------~~~~~~d~~k~~~~LG 409 (439)
+.. +++||+++++++|+.|+++.+.+.+|.+.+..... .....+ .....+|++|+++.||
T Consensus 199 ~~~-------------g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 265 (286)
T 3ius_A 199 PDP-------------GAVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELG 265 (286)
T ss_dssp CCT-------------TCEEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTC
T ss_pred CCC-------------CCEEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHHHhC
Confidence 652 27999999999999999999999999876543221 111111 1445689999999999
Q ss_pred CCccC-cHHHHHHHHHHH
Q 013602 410 YKPTT-DLQTGLKKFVRW 426 (439)
Q Consensus 410 ~~p~~-~l~e~l~~~v~~ 426 (439)
|+|++ +++|+|+++++.
T Consensus 266 ~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 266 VRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp CCCSCSSHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHh
Confidence 99998 799999998863
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=300.11 Aligned_cols=303 Identities=16% Similarity=0.208 Sum_probs=211.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC-CCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN-FNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+|+||||||+||||++++++|+++|++|++++| +.+....... . .... ...++.++.+|++|.++++++++++ |
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 76 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSF-L-TNLPGASEKLHFFNADLSNPDSFAAAIEGC--V 76 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHH-H-HTSTTHHHHEEECCCCTTCGGGGHHHHTTC--S
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHH-H-HhhhccCCceEEEecCCCCHHHHHHHHcCC--C
Confidence 578999999999999999999999999999988 4322111110 0 0100 1135788999999999999999987 9
Q ss_pred EEEEcccccCccccccCh-hHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCcc-cCCCC-CCCCCCCCCCC-------
Q 013602 177 HVMHLAAQAGVRYAMQNP-NSYVHSNIAGLVSLLEVCKNA-NPQPAIVWASSSSV-YGLNT-KVPFSEKDRTD------- 245 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~-~~~~~~Nv~gt~~ll~~~~~~-~~~~~~V~~SS~~v-~g~~~-~~~~~e~~~~~------- 245 (439)
+|||+|+.. .....++ ...+++|+.|+.+++++|++. +. ++||++||.++ |+... ..+++|+++..
T Consensus 77 ~vih~A~~~--~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~-~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 153 (322)
T 2p4h_X 77 GIFHTASPI--DFAVSEPEEIVTKRTVDGALGILKACVNSKTV-KRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSV 153 (322)
T ss_dssp EEEECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSC-CEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHH
T ss_pred EEEEcCCcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEeccHHHcccCCCCCeecCCccccchhhhccc
Confidence 999999753 2233333 458999999999999999987 53 59999999874 43322 23455554321
Q ss_pred CCCC-hHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChH-HHHHHHHHcCCCCceeecCCCCcceeeeeeH
Q 013602 246 QPAS-LYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAY-FFFTRDILNRKSIPIFESPDHGTVARDFTYI 323 (439)
Q Consensus 246 ~p~~-~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v 323 (439)
.|.. .|+.+|+++|.++.++.+++|++++++||++||||+....... ...+...+.+....+ +. ..++|+|+
T Consensus 154 ~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~----~~--~~~~~i~v 227 (322)
T 2p4h_X 154 KPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQI----GV--TRFHMVHV 227 (322)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGC----CE--EEEEEEEH
T ss_pred CcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccC----cC--CCcCEEEH
Confidence 1223 6999999999999998877899999999999999976532211 111112344543322 12 33489999
Q ss_pred HHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCC-ccccccccCCCCCCCCcccCChH
Q 013602 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKV-KAKRNIMKLPRNGDVPFTHANIS 402 (439)
Q Consensus 324 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~d~~ 402 (439)
+|+|++++.+++.+.. . +.|| ++++++|+.|+++.+.+.++. +.+... ............+|++
T Consensus 228 ~Dva~a~~~~~~~~~~------------~-g~~~-~~~~~~s~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~ 292 (322)
T 2p4h_X 228 DDVARAHIYLLENSVP------------G-GRYN-CSPFIVPIEEMSQLLSAKYPEYQILTVD-ELKEIKGARLPDLNTK 292 (322)
T ss_dssp HHHHHHHHHHHHSCCC------------C-EEEE-CCCEEEEHHHHHHHHHHHCTTSCCCCTT-TTTTCCCEECCEECCH
T ss_pred HHHHHHHHHHhhCcCC------------C-CCEE-EcCCCCCHHHHHHHHHHhCCCCCCCCCc-cccCCCCCcceecccH
Confidence 9999999999865331 1 3488 566889999999999988752 111110 0000011134668999
Q ss_pred HHHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 403 LAQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 403 k~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
|+ ++|||+|+++++|+|+++++||+++
T Consensus 293 k~-~~lG~~p~~~~~~~l~~~~~~~~~~ 319 (322)
T 2p4h_X 293 KL-VDAGFDFKYTIEDMFDDAIQCCKEK 319 (322)
T ss_dssp HH-HHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred HH-HHhCCccCCCHHHHHHHHHHHHHhc
Confidence 99 7799999999999999999999865
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=284.09 Aligned_cols=268 Identities=16% Similarity=0.162 Sum_probs=217.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+||||||+||||++++++|++ |++|++++|+.... .+ +.+|++|.+++.+++++.++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~--------------~~---~~~Dl~~~~~~~~~~~~~~~d~vi 62 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ--------------GG---YKLDLTDFPRLEDFIIKKRPDVII 62 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT--------------TC---EECCTTSHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC--------------CC---ceeccCCHHHHHHHHHhcCCCEEE
Confidence 4799999999999999999994 89999999965310 12 889999999999999986679999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
||||......+.+++...+++|+.++.++++++++.+. +||++||.++|+.... ++.|+++. .|.+.|+.+|+++|
T Consensus 63 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~iv~~SS~~~~~~~~~-~~~e~~~~-~~~~~Y~~sK~~~e 138 (273)
T 2ggs_A 63 NAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS--YIVHISTDYVFDGEKG-NYKEEDIP-NPINYYGLSKLLGE 138 (273)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEEEGGGSCSSSC-SBCTTSCC-CCSSHHHHHHHHHH
T ss_pred ECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEecceeEcCCCC-CcCCCCCC-CCCCHHHHHHHHHH
Confidence 99998655445678889999999999999999998874 9999999999986543 67777765 67789999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchh
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
.+++. ++++++||+.|||+ ......+...+..+..+..+ + . .++|+|++|+|++++.+++.+.
T Consensus 139 ~~~~~------~~~~~iR~~~v~G~----~~~~~~~~~~~~~~~~~~~~---~--~-~~~~~~~~dva~~i~~~~~~~~- 201 (273)
T 2ggs_A 139 TFALQ------DDSLIIRTSGIFRN----KGFPIYVYKTLKEGKTVFAF---K--G-YYSPISARKLASAILELLELRK- 201 (273)
T ss_dssp HHHCC------TTCEEEEECCCBSS----SSHHHHHHHHHHTTCCEEEE---S--C-EECCCBHHHHHHHHHHHHHHTC-
T ss_pred HHHhC------CCeEEEeccccccc----cHHHHHHHHHHHcCCCEEee---c--C-CCCceEHHHHHHHHHHHHhcCc-
Confidence 99876 57799999999983 33444555666777776664 2 2 7899999999999999997643
Q ss_pred ccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccC---CCCCCCCcccCChHHHHHHcCCCc-cCc
Q 013602 340 STGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL---PRNGDVPFTHANISLAQRELGYKP-TTD 415 (439)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~---~~~~~~~~~~~d~~k~~~~LG~~p-~~~ 415 (439)
+++||+++ +.+|+.|+++.+.+.+|.+.++..... ..........+|++|+++.|||+| .++
T Consensus 202 -------------~g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~ 267 (273)
T 2ggs_A 202 -------------TGIIHVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLD 267 (273)
T ss_dssp -------------CEEEECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCC
T ss_pred -------------CCeEEECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCcc
Confidence 16999999 999999999999999998765432110 112233456789999999999999 588
Q ss_pred HHHHH
Q 013602 416 LQTGL 420 (439)
Q Consensus 416 l~e~l 420 (439)
++++|
T Consensus 268 l~~~~ 272 (273)
T 2ggs_A 268 LDGMV 272 (273)
T ss_dssp GGGCC
T ss_pred ccccc
Confidence 88875
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=278.17 Aligned_cols=276 Identities=18% Similarity=0.147 Sum_probs=209.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|||||||||||++|+++|+++||+|+++.|+.... . +..| +...+.++++ |.||
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~---------------~---~~~~----~~~~~~l~~~--d~vi 56 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG---------------R---ITWD----ELAASGLPSC--DAAV 56 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT---------------E---EEHH----HHHHHCCCSC--SEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC---------------e---eecc----hhhHhhccCC--CEEE
Confidence 6899999999999999999999999999999943210 1 1122 2334455655 9999
Q ss_pred EcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 180 HLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANPQP-AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 180 ~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~-~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|+|+..... .+........++|+.+|.+|+++++..+..+ +||++||.++||.....+..|+++. .+.+.|+..
T Consensus 57 hla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~-~~~~~~~~~ 135 (298)
T 4b4o_A 57 NLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPG-GDFDFFSNL 135 (298)
T ss_dssp ECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCC-SCSSHHHHH
T ss_pred EeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCc-cccchhHHH
Confidence 999853221 1223345788999999999999999877543 6899999999999888888888866 677888888
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 334 (439)
|...|.... ....+++++++||+.||||++. .+..+......+....+ +++++.++|||++|+|++++.++
T Consensus 136 ~~~~e~~~~--~~~~~~~~~~~r~~~v~g~~~~---~~~~~~~~~~~~~~~~~----g~g~~~~~~ihv~Dva~a~~~~~ 206 (298)
T 4b4o_A 136 VTKWEAAAR--LPGDSTRQVVVRSGVVLGRGGG---AMGHMLLPFRLGLGGPI----GSGHQFFPWIHIGDLAGILTHAL 206 (298)
T ss_dssp HHHHHHHHC--CSSSSSEEEEEEECEEECTTSH---HHHHHHHHHHTTCCCCB----TTSCSBCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hhccCCceeeeeeeeEEcCCCC---chhHHHHHHhcCCccee----cccCceeecCcHHHHHHHHHHHH
Confidence 888776432 2335899999999999999753 44455555556655444 68999999999999999999999
Q ss_pred hhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCC------CC------CCcccCChH
Q 013602 335 DTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRN------GD------VPFTHANIS 402 (439)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~------~~------~~~~~~d~~ 402 (439)
+++... ++||+++++++|+.|+++.+.+.+|.+..+ +.|.. +. .....++.+
T Consensus 207 ~~~~~~-------------g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~---pvP~~~~~~~~g~~~~~~~l~~~rv~~~ 270 (298)
T 4b4o_A 207 EANHVH-------------GVLNGVAPSSATNAEFAQTFGAALGRRAFI---PLPSAVVQAVFGRQRAIMLLEGQKVIPR 270 (298)
T ss_dssp HCTTCC-------------EEEEESCSCCCBHHHHHHHHHHHHTCCCCC---CBCHHHHHHHHCHHHHHHHHCCCCBCCH
T ss_pred hCCCCC-------------CeEEEECCCccCHHHHHHHHHHHhCcCCcc---cCCHHHHHHHhcchhHHHhhCCCEEcHH
Confidence 876532 799999999999999999999999976432 33321 00 011235667
Q ss_pred HHHHHcCCCccC-cHHHHHHHHHHH
Q 013602 403 LAQRELGYKPTT-DLQTGLKKFVRW 426 (439)
Q Consensus 403 k~~~~LG~~p~~-~l~e~l~~~v~~ 426 (439)
|+ +++||++++ +++++|++.++.
T Consensus 271 kl-~~~Gf~f~yp~l~~al~~l~~~ 294 (298)
T 4b4o_A 271 RT-LATGYQYSFPELGAALKEIAEN 294 (298)
T ss_dssp HH-HHTTCCCSCCSHHHHHHHHHHC
T ss_pred HH-HHCCCCCCCCCHHHHHHHHHHh
Confidence 77 469999997 599999998873
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-35 Score=292.98 Aligned_cols=305 Identities=18% Similarity=0.247 Sum_probs=224.3
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHH----------HhhhcCCeEEEEcccCCHHH
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQ----------ALLERSGIFIVEGDINDMAL 165 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~v~~~~~Dl~d~~~ 165 (439)
...+|+|||||||||||++++++|+++|++|++++|+...... ...... ......++.++.+|++|.++
T Consensus 66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 144 (427)
T 4f6c_A 66 HRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIA-WYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD 144 (427)
T ss_dssp CCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHH-HHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHH-HHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence 3567899999999999999999999999999999996542111 111111 11123689999999999888
Q ss_pred HHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC-----CCCCCCCC
Q 013602 166 LKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGL-----NTKVPFSE 240 (439)
Q Consensus 166 ~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~-----~~~~~~~e 240 (439)
+. .+. ++|+||||||.... ..++...+++|+.|+.+++++|++ +. ++||++||.++ |. ....++.|
T Consensus 145 l~-~~~--~~d~Vih~A~~~~~---~~~~~~~~~~Nv~g~~~l~~aa~~-~~-~~~v~~SS~~~-G~~~~~~~~~~~~~E 215 (427)
T 4f6c_A 145 VV-LPE--NMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HH-ARLIYVSTISV-GTYFDIDTEDVTFSE 215 (427)
T ss_dssp CC-CSS--CCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHH-TT-CEEEEEEEGGG-GSEECSSCSCCEECT
T ss_pred CC-CcC--CCCEEEECCcccCC---CCCHHHHHHHHHHHHHHHHHHHHh-cC-CcEEEECchHh-CCCccCCCCCccccc
Confidence 87 444 45999999997542 356778999999999999999999 43 49999999988 53 23456777
Q ss_pred CCCC--CCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC-------ChHHHHHHHHHcCCCCceeecC
Q 013602 241 KDRT--DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD-------MAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 241 ~~~~--~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
+++. ..+.+.|+.+|+++|.+++++++ .|++++++|||+||||..... ..+..++..+..+..++..
T Consensus 216 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 291 (427)
T 4f6c_A 216 ADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVS--- 291 (427)
T ss_dssp TCSCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHH---
T ss_pred cccccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCc---
Confidence 7652 24779999999999999999865 599999999999999987543 2355677777777766552
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCC-
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR- 390 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~- 390 (439)
.++..++|++++|+|++++.++..+. . +++||+++++++++.|+++.+.+ ++ +...+.+.
T Consensus 292 -~~~~~~~~v~v~DvA~ai~~~~~~~~--~-----------g~~~~l~~~~~~s~~el~~~i~~-~g----~~~~~~~~~ 352 (427)
T 4f6c_A 292 -MAEMPVDFSFVDTTARQIVALAQVNT--P-----------QIIYHVLSPNKMPVKSLLECVKR-KE----IELVSDESF 352 (427)
T ss_dssp -HHTCEECCEEHHHHHHHHHHHTTSCC--C-----------CSEEEESCSCCEEHHHHHHHHHS-SC----CEEECHHHH
T ss_pred -cccceEEEeeHHHHHHHHHHHHcCCC--C-----------CCEEEecCCCCCcHHHHHHHHHH-cC----CcccCHHHH
Confidence 46789999999999999999987655 1 28999999999999999999998 55 11111110
Q ss_pred ------CC------------CCCcccCChHHHH---HHcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 391 ------NG------------DVPFTHANISLAQ---RELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 391 ------~~------------~~~~~~~d~~k~~---~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
.+ ......+|+++.. +++||.+....++.++++++++.+.+++
T Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~~~ 416 (427)
T 4f6c_A 353 NEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK 416 (427)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCchhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 00 1112456766665 5689987755577999999999998763
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=276.06 Aligned_cols=238 Identities=20% Similarity=0.271 Sum_probs=197.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhC-CC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRR-GD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~-G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
+++|+||||||+|+||++++++|+++ |+ +|++++|+. .............++.++.+|++|.+++.++++++
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~-----~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 92 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE-----LKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGV- 92 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCH-----HHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTC-
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECCh-----hhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcC-
Confidence 67899999999999999999999999 97 999999932 11111122223468999999999999999999876
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|+|||+||.......+.++...+++|+.|+.+++++|.+.+.. +||++||...+ .|.+.|+.+
T Consensus 93 -D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~SS~~~~---------------~p~~~Y~~s 155 (344)
T 2gn4_A 93 -DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALSTDKAA---------------NPINLYGAT 155 (344)
T ss_dssp -SEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGS---------------SCCSHHHHH
T ss_pred -CEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCCccC---------------CCccHHHHH
Confidence 9999999986655556678899999999999999999998854 99999997754 356899999
Q ss_pred HHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCC-CCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRK-SIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 255 K~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
|+++|.+++.++++ .|+++++||||+||||++ ..++.+...+..|. ++++. ++...++|+|++|+|+++
T Consensus 156 K~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~---~~i~~~~~~~~~g~~~~~i~----~~~~~r~~i~v~D~a~~v 228 (344)
T 2gn4_A 156 KLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG---SVVPFFKKLVQNKASEIPIT----DIRMTRFWITLDEGVSFV 228 (344)
T ss_dssp HHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT---SHHHHHHHHHHHTCCCEEES----CTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC---CHHHHHHHHHHcCCCceEEe----CCCeEEeeEEHHHHHHHH
Confidence 99999999998864 489999999999999875 36667777788887 66663 567889999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhC
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLK 378 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g 378 (439)
+.+++... .+++|++.++ .+++.|+++.+.+.++
T Consensus 229 ~~~l~~~~-------------~g~~~~~~~~-~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 229 LKSLKRMH-------------GGEIFVPKIP-SMKMTDLAKALAPNTP 262 (344)
T ss_dssp HHHHHHCC-------------SSCEEEECCC-EEEHHHHHHHHCTTCC
T ss_pred HHHHhhcc-------------CCCEEecCCC-cEEHHHHHHHHHHhCC
Confidence 99998643 1279998775 6999999999987553
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=299.18 Aligned_cols=282 Identities=17% Similarity=0.137 Sum_probs=207.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|+||||||+||||++|+++|+++|++|++++|+.... ..+.+|+.+. +.++++++ |+|
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~-----------------~~v~~d~~~~--~~~~l~~~--D~V 205 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP-----------------GKRFWDPLNP--ASDLLDGA--DVL 205 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT-----------------TCEECCTTSC--CTTTTTTC--SEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc-----------------cceeecccch--hHHhcCCC--CEE
Confidence 78999999999999999999999999999999965421 1266787653 45556655 999
Q ss_pred EEcccccCc-cccccChhHHHHHHHHHHHHHHHH-HHhcCCCCeEEEecCCcccC-CCCCCCCCCCCCCCCCCChHHHHH
Q 013602 179 MHLAAQAGV-RYAMQNPNSYVHSNIAGLVSLLEV-CKNANPQPAIVWASSSSVYG-LNTKVPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 179 i~~Ag~~~~-~~~~~~~~~~~~~Nv~gt~~ll~~-~~~~~~~~~~V~~SS~~v~g-~~~~~~~~e~~~~~~p~~~Y~~sK 255 (439)
||+||.... .....++...+++|+.|+.+|+++ +++.+ .++||++||.++|| .....++.|+++. +.+.|+.+|
T Consensus 206 ih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~-~~r~V~~SS~~vyg~~~~~~~~~E~~~~--~~~~y~~~~ 282 (516)
T 3oh8_A 206 VHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQ-CTTMISASAVGFYGHDRGDEILTEESES--GDDFLAEVC 282 (516)
T ss_dssp EECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSS-CCEEEEEEEGGGGCSEEEEEEECTTSCC--CSSHHHHHH
T ss_pred EECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEeCcceEecCCCCCCccCCCCCC--CcChHHHHH
Confidence 999997543 234456778999999999999999 55555 45999999999999 5555577777765 678999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHh
Q 013602 256 KAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335 (439)
Q Consensus 256 ~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 335 (439)
.++|.++..+. ..|+++++|||++||||+.. .+..+...+..+... .+ +++++.++|+|++|+|++++.+++
T Consensus 283 ~~~E~~~~~~~-~~gi~~~ilRp~~v~Gp~~~---~~~~~~~~~~~g~~~-~~---g~g~~~~~~i~v~Dva~ai~~~l~ 354 (516)
T 3oh8_A 283 RDWEHATAPAS-DAGKRVAFIRTGVALSGRGG---MLPLLKTLFSTGLGG-KF---GDGTSWFSWIAIDDLTDIYYRAIV 354 (516)
T ss_dssp HHHHHTTHHHH-HTTCEEEEEEECEEEBTTBS---HHHHHHHTTC---CC-CC---TTSCCEECEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCCEEEEEeeEEECCCCC---hHHHHHHHHHhCCCc-cc---CCCCceEceEeHHHHHHHHHHHHh
Confidence 99998876544 46999999999999999742 444555444444443 22 678899999999999999999998
Q ss_pred hchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCC----CCCC-------CcccCChHHH
Q 013602 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR----NGDV-------PFTHANISLA 404 (439)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~----~~~~-------~~~~~d~~k~ 404 (439)
.+... ++||+++++++|+.|+++.+.+.+|.+..+ ..|... .++. ....++.+|+
T Consensus 355 ~~~~~-------------g~~ni~~~~~~s~~el~~~i~~~~g~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl 420 (516)
T 3oh8_A 355 DAQIS-------------GPINAVAPNPVSNADMTKILATSMHRPAFI-QIPSLGPKILLGSQGAEELALASQRTAPAAL 420 (516)
T ss_dssp CTTCC-------------EEEEESCSCCEEHHHHHHHTTC----------------------CCGGGGGGCEEEECCHHH
T ss_pred CcccC-------------CcEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCHHHHHHHhCCchhHHHhhcCCeechHHH
Confidence 65421 689999999999999999999999976522 222110 1111 1234677888
Q ss_pred HHHcCCCccCc-HHHHHHHHHHHH
Q 013602 405 QRELGYKPTTD-LQTGLKKFVRWY 427 (439)
Q Consensus 405 ~~~LG~~p~~~-l~e~l~~~v~~~ 427 (439)
+ +|||+|+++ ++++|++++++.
T Consensus 421 ~-~lG~~~~~~~l~e~l~~~l~~~ 443 (516)
T 3oh8_A 421 E-NLSHTFRYTDIGAAIAHELGYE 443 (516)
T ss_dssp H-HTTCCCSCSSHHHHHHHHHTCC
T ss_pred H-HCCCCCCCCCHHHHHHHHhCcc
Confidence 7 699999987 999999998754
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-33 Score=283.00 Aligned_cols=268 Identities=17% Similarity=0.203 Sum_probs=202.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhC---CCeEEEEECCCCCCChhHHHHHH-------------HhhhcCCeEEEEccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRR---GDGVLGLDNFNDYYDPSLKKARQ-------------ALLERSGIFIVEGDI 160 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~---G~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~Dl 160 (439)
..+|+|||||||||||++++++|+++ |++|++++|+.+... ....... ......++.++.+|+
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 149 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDED-ARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK 149 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHH-HHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHH-HHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence 57899999999999999999999999 999999999654210 0000000 011236899999999
Q ss_pred C------CHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC
Q 013602 161 N------DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT 234 (439)
Q Consensus 161 ~------d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~ 234 (439)
+ |.+.+.++++++ |+||||||.... .++...+++|+.|+.+++++|++.+.. +||++||.++|+...
T Consensus 150 ~~~~~gld~~~~~~~~~~~--D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~~V~iSS~~v~~~~~ 222 (478)
T 4dqv_A 150 SEPDLGLDQPMWRRLAETV--DLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLK-PFTYVSTADVGAAIE 222 (478)
T ss_dssp TSGGGGCCHHHHHHHHHHC--CEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCC-CEEEEEEGGGGTTSC
T ss_pred CCcccCCCHHHHHHHHcCC--CEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEEeehhhcCccC
Confidence 8 777899999876 999999998553 566678999999999999999998854 999999999999877
Q ss_pred CCCCCCCCCCCCCC-----------ChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCC-----CCCChHHHHHHH
Q 013602 235 KVPFSEKDRTDQPA-----------SLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWG-----RPDMAYFFFTRD 298 (439)
Q Consensus 235 ~~~~~e~~~~~~p~-----------~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~-----~~~~~~~~~~~~ 298 (439)
..++.|++.. .|. +.|+.+|+++|.+++++.++.|++++++|||+|||+.. .....+..++..
T Consensus 223 ~~~~~E~~~~-~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~ 301 (478)
T 4dqv_A 223 PSAFTEDADI-RVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLS 301 (478)
T ss_dssp TTTCCSSSCH-HHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHH
T ss_pred CCCcCCcccc-cccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHH
Confidence 7778777643 222 44999999999999999988899999999999999854 222344445544
Q ss_pred HHcCCCCc--eeecCCC---CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc--ccHHHHHH
Q 013602 299 ILNRKSIP--IFESPDH---GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP--VPVSDLVS 371 (439)
Q Consensus 299 ~~~g~~~~--~~~~~~~---~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~t~~el~~ 371 (439)
....+..+ ++...++ ++..++|+|++|+|++++.++...... +...+++||++++++ +|+.|+++
T Consensus 302 ~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~--------~~~~~~~ynv~~~~~~~~s~~el~~ 373 (478)
T 4dqv_A 302 LMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGS--------SLAGFATYHVMNPHDDGIGLDEYVD 373 (478)
T ss_dssp HHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-C--------CCCSEEEEEESCCCCSSCSHHHHHH
T ss_pred HHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccC--------CCCCCceEEecCCCCCCcCHHHHHH
Confidence 44433222 1111111 267889999999999999998763211 112348999999887 99999999
Q ss_pred HHHHHhCCccc
Q 013602 372 ILERLLKVKAK 382 (439)
Q Consensus 372 ~l~~~~g~~~~ 382 (439)
.+.+. |.+..
T Consensus 374 ~l~~~-g~~~~ 383 (478)
T 4dqv_A 374 WLIEA-GYPIR 383 (478)
T ss_dssp HHHHT-TCSCE
T ss_pred HHHHc-CCCcc
Confidence 99995 65544
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=291.97 Aligned_cols=304 Identities=18% Similarity=0.251 Sum_probs=224.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHH----------HhhhcCCeEEEEcccCCHHHH
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQ----------ALLERSGIFIVEGDINDMALL 166 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~v~~~~~Dl~d~~~~ 166 (439)
..+|+|||||||||||++|+++|+++|++|++++|........ .+... ......++.++.+|++|.+++
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 226 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAW-YKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 226 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHH-HHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHH-HHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence 3468999999999999999999999999999999965421111 11100 112346899999999998877
Q ss_pred HHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC-----CCCCCCCCC
Q 013602 167 KKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGL-----NTKVPFSEK 241 (439)
Q Consensus 167 ~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~-----~~~~~~~e~ 241 (439)
. ++.+ +|+||||||.... ..++...+++|+.|+.+++++|++ +. ++|||+||.++ |. ....++.|+
T Consensus 227 ~-~~~~--~D~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~-~~-~~~v~iSS~~v-G~~~~~~~~~~~~~E~ 297 (508)
T 4f6l_B 227 V-LPEN--MDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HH-ARLIYVSTISV-GTYFDIDTEDVTFSEA 297 (508)
T ss_dssp C-CSSC--CSEEEECCCC-----------CCHHHHHHHHHHHHHHHHT-TT-CEEEEEEESCT-TSEECTTCSCCEECTT
T ss_pred C-CccC--CCEEEECCceecC---CCCHHHHhhhHHHHHHHHHHHHHh-CC-CcEEEeCChhh-ccCCccCCcCcccccc
Confidence 7 4444 5999999997542 355677889999999999999998 43 49999999998 43 234466777
Q ss_pred CCC--CCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC-------ChHHHHHHHHHcCCCCceeecCC
Q 013602 242 DRT--DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD-------MAYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 242 ~~~--~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
++. ..+.+.|+.+|+++|.+++++.+ .|++++++|||+|||+..... ..+..++..+..++.++. +
T Consensus 298 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~ 372 (508)
T 4f6l_B 298 DVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV----S 372 (508)
T ss_dssp CSCSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET----T
T ss_pred cccccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC----C
Confidence 653 23678999999999999999865 599999999999999976533 235566777776665554 2
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCC---
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP--- 389 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~--- 389 (439)
.++..++|+|++|+|++++.++..+. .+++||+++++++++.|+++.+.+.. . ...+.+
T Consensus 373 ~g~~~~~~v~v~DvA~ai~~~~~~~~-------------~~~~~nl~~~~~~s~~el~~~i~~~~-~----~~~~~~~w~ 434 (508)
T 4f6l_B 373 MAEMPVDFSFVDTTARQIVALAQVNT-------------PQIIYHVLSPNKMPVKSLLECVKRKE-I----ELVSDESFN 434 (508)
T ss_dssp GGGSEEECEEHHHHHHHHHHHTTBCC-------------SCSEEEESCSCEEEHHHHHHHHHSSC-C----EEECHHHHH
T ss_pred ccCceEEEEcHHHHHHHHHHHHhCCC-------------CCCEEEeCCCCCCCHHHHHHHHHHcC-C----cccCHHHHH
Confidence 46889999999999999999987654 12899999999999999999998754 1 111100
Q ss_pred ----C------------CCCCCcccCChHHHH---HHcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 390 ----R------------NGDVPFTHANISLAQ---RELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 390 ----~------------~~~~~~~~~d~~k~~---~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
. ........+|+++.. +++||.+....++.++++++|+.+.+++
T Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~~~ 497 (508)
T 4f6l_B 435 EILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK 497 (508)
T ss_dssp HHHHTTCCHHHHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCCccchhcccccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 001113346666655 5689998866688999999999998763
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=268.04 Aligned_cols=261 Identities=17% Similarity=0.180 Sum_probs=201.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhC--CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRR--GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
|+|||||||||||++++++|+++ |++|++++|+..... .+...+++++.+|++|.+++.++++++ |+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~---------~l~~~~~~~~~~D~~d~~~l~~~~~~~--d~ 69 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS---------TLADQGVEVRHGDYNQPESLQKAFAGV--SK 69 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH---------HHHHTTCEEEECCTTCHHHHHHHTTTC--SE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh---------HHhhcCCeEEEeccCCHHHHHHHHhcC--CE
Confidence 57999999999999999999999 999999999553211 111257899999999999999999977 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a 257 (439)
|||+||.. . . . ++|+.++.+++++|++.+.. +||++||.++|. ....|+.+|.+
T Consensus 70 vi~~a~~~-~----~---~--~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~---------------~~~~y~~~K~~ 123 (287)
T 2jl1_A 70 LLFISGPH-Y----D---N--TLLIVQHANVVKAARDAGVK-HIAYTGYAFAEE---------------SIIPLAHVHLA 123 (287)
T ss_dssp EEECCCCC-S----C---H--HHHHHHHHHHHHHHHHTTCS-EEEEEEETTGGG---------------CCSTHHHHHHH
T ss_pred EEEcCCCC-c----C---c--hHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCC---------------CCCchHHHHHH
Confidence 99999852 1 1 1 67999999999999998854 999999998862 11379999999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
+|.++++ .|++++++||+.++|+... .++...+..+... + ..++..++|+|++|+|++++.+++.+
T Consensus 124 ~E~~~~~----~~~~~~ilrp~~~~~~~~~------~~~~~~~~~~~~~-~---~~~~~~~~~i~~~Dva~~~~~~~~~~ 189 (287)
T 2jl1_A 124 TEYAIRT----TNIPYTFLRNALYTDFFVN------EGLRASTESGAIV-T---NAGSGIVNSVTRNELALAAATVLTEE 189 (287)
T ss_dssp HHHHHHH----TTCCEEEEEECCBHHHHSS------GGGHHHHHHTEEE-E---SCTTCCBCCBCHHHHHHHHHHHHTSS
T ss_pred HHHHHHH----cCCCeEEEECCEeccccch------hhHHHHhhCCcee-c---cCCCCccCccCHHHHHHHHHHHhcCC
Confidence 9999864 5999999999998886421 1122222222222 2 24567889999999999999999764
Q ss_pred hhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCC-------CCCC----------------
Q 013602 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR-------NGDV---------------- 394 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~-------~~~~---------------- 394 (439)
.. .+++||+++++++|+.|+++.+.+.+|.+.++...+... .+..
T Consensus 190 ~~------------~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (287)
T 2jl1_A 190 GH------------ENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISK 257 (287)
T ss_dssp SC------------TTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CC------------CCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC
Confidence 32 238999999999999999999999999876654433210 0100
Q ss_pred CcccCChHHHHHHcCCCccCcHHHHHHHHHH
Q 013602 395 PFTHANISLAQRELGYKPTTDLQTGLKKFVR 425 (439)
Q Consensus 395 ~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~ 425 (439)
.....|.+|+++.|| |.++++|+|+++++
T Consensus 258 ~~~~~~~~~~~~~lG--~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 258 GEASKTSDDLQKLIG--SLTPLKETVKQALK 286 (287)
T ss_dssp TTTCCCCSHHHHHHS--SCCCHHHHHHHHHT
T ss_pred CCCcCCchHHHHHhC--CCCCHHHHHHHHhc
Confidence 124567899999999 66799999999875
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=259.50 Aligned_cols=236 Identities=22% Similarity=0.247 Sum_probs=193.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|+||||||+||||++++++|+++|++|++++|+..... ..++.++.+|++|.+++.++++++ |+|
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~--d~v 67 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA------------EAHEEIVACDLADAQAVHDLVKDC--DGI 67 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC------------CTTEEECCCCTTCHHHHHHHHTTC--SEE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc------------CCCccEEEccCCCHHHHHHHHcCC--CEE
Confidence 368999999999999999999999999999999654211 136789999999999999999976 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-CCCCCCCCCCCCCCChHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT-KVPFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~-~~~~~e~~~~~~p~~~Y~~sK~a 257 (439)
|||||.. ...++...+++|+.++.++++++++.+. ++||++||.++|+... ..+++|+++. .|.+.|+.+|++
T Consensus 68 i~~a~~~----~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~iv~~SS~~~~~~~~~~~~~~E~~~~-~~~~~Y~~sK~~ 141 (267)
T 3ay3_A 68 IHLGGVS----VERPWNDILQANIIGAYNLYEAARNLGK-PRIVFASSNHTIGYYPRTTRIDTEVPR-RPDSLYGLSKCF 141 (267)
T ss_dssp EECCSCC----SCCCHHHHHHHTHHHHHHHHHHHHHTTC-CEEEEEEEGGGSTTSBTTSCBCTTSCC-CCCSHHHHHHHH
T ss_pred EECCcCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCC-CEEEEeCCHHHhCCCCCCCCCCCCCCC-CCCChHHHHHHH
Confidence 9999974 2356778999999999999999998875 4999999999998643 4577887766 678999999999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
+|.+++.+.+++|++++++||+.+|+... .+...++|+|++|+|++++.+++.+
T Consensus 142 ~e~~~~~~~~~~gi~~~~lrp~~v~~~~~--------------------------~~~~~~~~~~~~dva~~~~~~~~~~ 195 (267)
T 3ay3_A 142 GEDLASLYYHKFDIETLNIRIGSCFPKPK--------------------------DARMMATWLSVDDFMRLMKRAFVAP 195 (267)
T ss_dssp HHHHHHHHHHTTCCCEEEEEECBCSSSCC--------------------------SHHHHHHBCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHcCCCEEEEeceeecCCCC--------------------------CCCeeeccccHHHHHHHHHHHHhCC
Confidence 99999998877899999999999984210 1234567999999999999998865
Q ss_pred hhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCccCcHH
Q 013602 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQ 417 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~ 417 (439)
.. .+++|++.++. .....|..++ +.|||+|+++++
T Consensus 196 ~~------------~~~~~~~~~~~--------------------------------~~~~~d~~~~-~~lg~~p~~~~~ 230 (267)
T 3ay3_A 196 KL------------GCTVVYGASAN--------------------------------TESWWDNDKS-AFLGWVPQDSSE 230 (267)
T ss_dssp CC------------CEEEEEECCSC--------------------------------SSCCBCCGGG-GGGCCCCCCCGG
T ss_pred CC------------CceeEecCCCc--------------------------------cccccCHHHH-HHcCCCCCCCHH
Confidence 42 12678776432 1234577777 889999999999
Q ss_pred HHHHHHHH
Q 013602 418 TGLKKFVR 425 (439)
Q Consensus 418 e~l~~~v~ 425 (439)
++++++.+
T Consensus 231 ~~~~~~~~ 238 (267)
T 3ay3_A 231 IWREEIEQ 238 (267)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHh
Confidence 99988765
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=275.28 Aligned_cols=251 Identities=23% Similarity=0.377 Sum_probs=207.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
|+|||||||||||++++++|+++|+ +|+.++|+ .|.+++.++++++ |+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~----------------------------~d~~~l~~~~~~~--d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ----------------------------TKEEELESALLKA--DFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT----------------------------CCHHHHHHHHHHC--SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC----------------------------CCHHHHHHHhccC--CEE
Confidence 5899999999999999999999998 88888771 6889999999976 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
||+||.... +++...+++|+.++.+++++|++.+..++||++||.++|+ .+.|+.+|+++
T Consensus 51 ih~a~~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~----------------~~~Y~~sK~~~ 110 (369)
T 3st7_A 51 VHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ----------------DNPYGESKLQG 110 (369)
T ss_dssp EECCCSBCT----TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS----------------CSHHHHHHHHH
T ss_pred EECCcCCCC----CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC----------------CCCchHHHHHH
Confidence 999997543 4566678889999999999999998655999999999975 46899999999
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCC--ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhh
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD--MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
|.++++++++.|++++++||++||||+..+. ..+..++..+..+..+.+. +++..++|+|++|+|++++.+++.
T Consensus 111 E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~~~~~~l~~ 186 (369)
T 3st7_A 111 EQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVN----DRNVELTLNYVDDIVAEIKRAIEG 186 (369)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCS----CTTCEEEEEEHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEec----CCCeEEEEEEHHHHHHHHHHHHhC
Confidence 9999999998899999999999999987653 5777888888899887763 678899999999999999999987
Q ss_pred chhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCccCcH
Q 013602 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDL 416 (439)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l 416 (439)
+... .+++||+++++.+|+.|+++.+.+.+|.+.+....+.+ ...........|||.|..++
T Consensus 187 ~~~~-----------~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~-------~~~~~~l~~~~l~~~p~~~~ 248 (369)
T 3st7_A 187 TPTI-----------ENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLD-------NLFEKDLYSTYLSYLPSTDF 248 (369)
T ss_dssp CCCE-----------ETTEECCSCCEEEEHHHHHHHHHHHHHHHHHTCCCCTT-------SHHHHHHHHHHHHTSCTTCS
T ss_pred Cccc-----------CCceEEeCCCCceeHHHHHHHHHHHhCCCcccccCCCC-------CHHHHHHHHHHhcccCCcce
Confidence 6542 13899999999999999999999999976543321110 01112333445899998777
Q ss_pred HHHHHH
Q 013602 417 QTGLKK 422 (439)
Q Consensus 417 ~e~l~~ 422 (439)
++++..
T Consensus 249 ~~~l~~ 254 (369)
T 3st7_A 249 SYPLLM 254 (369)
T ss_dssp CCCCCE
T ss_pred eechhh
Confidence 666544
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-33 Score=264.70 Aligned_cols=261 Identities=15% Similarity=0.102 Sum_probs=195.9
Q ss_pred EEEEECCCChHHHHHHHHHHhC--CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRR--GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+||||||+||||++++++|+++ |++|++++|+.+... .....+++++.+|++|.+++.++++++ |+|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~~D~~d~~~~~~~~~~~--d~v 69 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ---------ALAAQGITVRQADYGDEAALTSALQGV--EKL 69 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH---------HHHHTTCEEEECCTTCHHHHHHHTTTC--SEE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh---------hhhcCCCeEEEcCCCCHHHHHHHHhCC--CEE
Confidence 4899999999999999999999 999999999654211 111247899999999999999999987 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
||+||... ..|+.++.+++++|++.+.. +||++||.++|. ....|+.+|.++
T Consensus 70 i~~a~~~~------------~~~~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~---------------~~~~y~~sK~~~ 121 (286)
T 2zcu_A 70 LLISSSEV------------GQRAPQHRNVINAAKAAGVK-FIAYTSLLHADT---------------SPLGLADEHIET 121 (286)
T ss_dssp EECC--------------------CHHHHHHHHHHHHTCC-EEEEEEETTTTT---------------CCSTTHHHHHHH
T ss_pred EEeCCCCc------------hHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCC---------------CcchhHHHHHHH
Confidence 99998521 14788999999999998854 999999988861 124799999999
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
|.++++ .|++++++||+.++++.. .++...+.++.+. + +.++..++|+|++|+|++++.++..+.
T Consensus 122 e~~~~~----~~~~~~ilrp~~~~~~~~-------~~~~~~~~~~~~~-~---~~~~~~~~~i~~~Dva~~~~~~~~~~~ 186 (286)
T 2zcu_A 122 EKMLAD----SGIVYTLLRNGWYSENYL-------ASAPAALEHGVFI-G---AAGDGKIASATRADYAAAAARVISEAG 186 (286)
T ss_dssp HHHHHH----HCSEEEEEEECCBHHHHH-------TTHHHHHHHTEEE-E---SCTTCCBCCBCHHHHHHHHHHHHHSSS
T ss_pred HHHHHH----cCCCeEEEeChHHhhhhH-------HHhHHhhcCCcee-c---cCCCCccccccHHHHHHHHHHHhcCCC
Confidence 999875 599999999988766421 1122233333333 2 356778999999999999999998643
Q ss_pred hccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCC-------CCCC----------------C
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR-------NGDV----------------P 395 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~-------~~~~----------------~ 395 (439)
. .+++||+++++.+|+.|+++.+.+.+|.+.++...+... .+.. .
T Consensus 187 ~------------~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (286)
T 2zcu_A 187 H------------EGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKG 254 (286)
T ss_dssp C------------TTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTT
T ss_pred C------------CCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 2 237999999989999999999999999876654433210 0111 1
Q ss_pred cccCChHHHHHHcCCCccCcHHHHHHHHHHHHH
Q 013602 396 FTHANISLAQRELGYKPTTDLQTGLKKFVRWYL 428 (439)
Q Consensus 396 ~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~ 428 (439)
....|.+++++.|||. .++++|+|+++++||+
T Consensus 255 ~~~~~~~~~~~~lg~~-~~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 255 GLFDDSKTLSKLIGHP-TTTLAESVSHLFNVNN 286 (286)
T ss_dssp TTCCCCCHHHHHHTSC-CCCHHHHHHGGGC---
T ss_pred CCccCchHHHHHhCcC-CCCHHHHHHHHHhhcC
Confidence 2456789999999975 4599999999999874
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=250.94 Aligned_cols=223 Identities=12% Similarity=0.100 Sum_probs=175.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|+||||||+||||++++++|+++|++|++++|+.+..... ..++.++.+|++|.+++.++++++ |+|
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~~~--d~v 71 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE----------NEHLKVKKADVSSLDEVCEVCKGA--DAV 71 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC----------CTTEEEECCCTTCHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc----------cCceEEEEecCCCHHHHHHHhcCC--CEE
Confidence 57999999999999999999999999999999954322111 268999999999999999999976 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
||+||... .+ ...+++|+.++.++++++++.+.. +||++||.++|+..... ..++.+. .|.+.|+.+|+++
T Consensus 72 i~~a~~~~-----~~-~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~~~~~~-~~~~~~~-~p~~~Y~~sK~~~ 142 (227)
T 3dhn_A 72 ISAFNPGW-----NN-PDIYDETIKVYLTIIDGVKKAGVN-RFLMVGGAGSLFIAPGL-RLMDSGE-VPENILPGVKALG 142 (227)
T ss_dssp EECCCC------------CCSHHHHHHHHHHHHHHHTTCS-EEEEECCSTTSEEETTE-EGGGTTC-SCGGGHHHHHHHH
T ss_pred EEeCcCCC-----CC-hhHHHHHHHHHHHHHHHHHHhCCC-EEEEeCChhhccCCCCC-ccccCCc-chHHHHHHHHHHH
Confidence 99998631 11 236788999999999999999854 99999999877644332 2233333 5778999999999
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
|.+++.++++.|++++++||+.||||+...... ..+...+.. .+.. ++|+|++|+|++++.+++++.
T Consensus 143 e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~--------~~~~~~~~~----~~~~-~~~i~~~Dva~ai~~~l~~~~ 209 (227)
T 3dhn_A 143 EFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRY--------RLGKDDMIV----DIVG-NSHISVEDYAAAMIDELEHPK 209 (227)
T ss_dssp HHHHHTGGGCCSSEEEEEECCSEEESCCCCCCC--------EEESSBCCC----CTTS-CCEEEHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhccCccEEEEeCCcccCCCccccce--------eecCCCccc----CCCC-CcEEeHHHHHHHHHHHHhCcc
Confidence 999999987789999999999999998654322 123333332 1222 899999999999999999876
Q ss_pred hccCCCCCccCCCCCcEEEecCCCcccHH
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVS 367 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~ 367 (439)
. .+++|+++++++.++.
T Consensus 210 ~------------~g~~~~~~~~~~~~~~ 226 (227)
T 3dhn_A 210 H------------HQERFTIGYLEHHHHH 226 (227)
T ss_dssp C------------CSEEEEEECCSCCC--
T ss_pred c------------cCcEEEEEeehhcccC
Confidence 3 3499999999988875
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-31 Score=253.48 Aligned_cols=213 Identities=21% Similarity=0.188 Sum_probs=178.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
++|+||||||+||||++++++|+++|++|++++|+..... ..++.++.+|++|.++++++++++ |+
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~--D~ 67 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA------------GPNEECVQCDLADANAVNAMVAGC--DG 67 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC------------CTTEEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc------------CCCCEEEEcCCCCHHHHHHHHcCC--CE
Confidence 4689999999999999999999999999999999654322 357999999999999999999976 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-CCCCCCCCCCCCCCChHHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT-KVPFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~-~~~~~e~~~~~~p~~~Y~~sK~ 256 (439)
||||||.. ..++++..+++|+.|+.++++++++.+. ++||++||.++||... ..++.|+.+. .+.+.|+.+|+
T Consensus 68 vi~~Ag~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iv~~SS~~~~g~~~~~~~~~e~~~~-~~~~~Y~~sK~ 141 (267)
T 3rft_A 68 IVHLGGIS----VEKPFEQILQGNIIGLYNLYEAARAHGQ-PRIVFASSNHTIGYYPQTERLGPDVPA-RPDGLYGVSKC 141 (267)
T ss_dssp EEECCSCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTC-CEEEEEEEGGGGTTSBTTSCBCTTSCC-CCCSHHHHHHH
T ss_pred EEECCCCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEcchHHhCCCCCCCCCCCCCCC-CCCChHHHHHH
Confidence 99999973 3467789999999999999999999885 4999999999997433 4456666655 67899999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhh
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
++|.+++.+++++|+++++|||+.|||+. .++...++|++++|+++++..+++.
T Consensus 142 ~~e~~~~~~a~~~g~~~~~vr~~~v~~~~--------------------------~~~~~~~~~~~~~d~a~~~~~~~~~ 195 (267)
T 3rft_A 142 FGENLARMYFDKFGQETALVRIGSCTPEP--------------------------NNYRMLSTWFSHDDFVSLIEAVFRA 195 (267)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECBCSSSC--------------------------CSTTHHHHBCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCeEEEEEeecccCCC--------------------------CCCCceeeEEcHHHHHHHHHHHHhC
Confidence 99999999998899999999999999872 2345566799999999999999886
Q ss_pred chhccCCCCCccCCCCCcEEEecCCCcccHHH
Q 013602 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSD 368 (439)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~e 368 (439)
+... ..++++.++++.++.+
T Consensus 196 ~~~~------------~~~~~~~s~~~~~~~~ 215 (267)
T 3rft_A 196 PVLG------------CPVVWGASANDAGWWD 215 (267)
T ss_dssp SCCC------------SCEEEECCCCTTCCBC
T ss_pred CCCC------------ceEEEEeCCCCCCccc
Confidence 5532 2578888766555433
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=261.12 Aligned_cols=290 Identities=16% Similarity=0.134 Sum_probs=202.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
|.+|+||||||||+||++++++|+++|++|++++|+.+.. +. .......+...+++++.+|++|.+++.+++++.++|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~-~~-~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 85 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRS-PS-KAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEID 85 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCC-HH-HHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCC-hh-HHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCC
Confidence 5567999999999999999999999999999999965331 11 111222334579999999999999999999955559
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~ 256 (439)
+|||+||.. |+.++.+++++|++.+..++||+ | +||. +..|.++. .|...|+.+|+
T Consensus 86 ~Vi~~a~~~---------------n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~----~~~e~~~~-~p~~~y~~sK~ 141 (346)
T 3i6i_A 86 IVVSTVGGE---------------SILDQIALVKAMKAVGTIKRFLP-S---EFGH----DVNRADPV-EPGLNMYREKR 141 (346)
T ss_dssp EEEECCCGG---------------GGGGHHHHHHHHHHHCCCSEEEC-S---CCSS----CTTTCCCC-TTHHHHHHHHH
T ss_pred EEEECCchh---------------hHHHHHHHHHHHHHcCCceEEee-c---ccCC----CCCccCcC-CCcchHHHHHH
Confidence 999999862 77789999999999983348875 4 3442 23333333 56789999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhh
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
++|.++++ .|++++++|||.++|...... . ........++.+.++ ++++..++|+|++|+|++++.++..
T Consensus 142 ~~e~~l~~----~g~~~tivrpg~~~g~~~~~~-~--~~~~~~~~~~~~~~~---g~g~~~~~~i~~~Dva~~~~~~l~~ 211 (346)
T 3i6i_A 142 RVRQLVEE----SGIPFTYICCNSIASWPYYNN-I--HPSEVLPPTDFFQIY---GDGNVKAYFVAGTDIGKFTMKTVDD 211 (346)
T ss_dssp HHHHHHHH----TTCCBEEEECCEESSCCCSCC--------CCCCSSCEEEE---TTSCCCEEEECHHHHHHHHHHHTTC
T ss_pred HHHHHHHH----cCCCEEEEEecccccccCccc-c--ccccccCCCceEEEc---cCCCceEEecCHHHHHHHHHHHHhC
Confidence 99999876 599999999999999653211 1 111111234444554 6888899999999999999999987
Q ss_pred chhccCCCCCccCCCCCcEEEecC-CCcccHHHHHHHHHHHhCCccccccccCCC-------C-----------------
Q 013602 337 AEKSTGSGGKKRGRAQLRVFNLGN-TSPVPVSDLVSILERLLKVKAKRNIMKLPR-------N----------------- 391 (439)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~i~~-~~~~t~~el~~~l~~~~g~~~~~~~~~~~~-------~----------------- 391 (439)
+.. .+++|++.+ ++.+|+.|+++.+.+.+|.+.++...+... .
T Consensus 212 ~~~------------~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 279 (346)
T 3i6i_A 212 VRT------------LNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIK 279 (346)
T ss_dssp GGG------------TTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTT
T ss_pred ccc------------cCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhcc
Confidence 653 227899985 589999999999999999887765544210 0
Q ss_pred CCCCcccC---ChHHHHHH-cCCCccCcHHHHHHHHHHHHHHHccCCC
Q 013602 392 GDVPFTHA---NISLAQRE-LGYKPTTDLQTGLKKFVRWYLSYYAGGK 435 (439)
Q Consensus 392 ~~~~~~~~---d~~k~~~~-LG~~p~~~l~e~l~~~v~~~~~~~~~~~ 435 (439)
++...+.. +..++.+. -+++++ +++|.|+++++|+.++++.++
T Consensus 280 g~~~~~~~~~~~~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~~~~~~ 326 (346)
T 3i6i_A 280 GCQVNFSIDGPEDVEVTTLYPEDSFR-TVEECFGEYIVKMEEKQPTAD 326 (346)
T ss_dssp CTTTSSCCCSTTEEEHHHHSTTCCCC-CHHHHHHHHHCC---------
T ss_pred CCCcccccCCCCcccHHHhCCCCCcC-cHHHHHHHHHHHhhccccccc
Confidence 11000111 11123332 356654 899999999999999876554
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=238.95 Aligned_cols=216 Identities=16% Similarity=0.187 Sum_probs=170.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCe-EEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGI-FIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+++|+||||||+||||++++++|+++|++|++++|+.+. .......++ +++.+|++ +++.+++.++
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~---------~~~~~~~~~~~~~~~Dl~--~~~~~~~~~~-- 85 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQ---------GPELRERGASDIVVANLE--EDFSHAFASI-- 85 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGG---------HHHHHHTTCSEEEECCTT--SCCGGGGTTC--
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHH---------HHHHHhCCCceEEEcccH--HHHHHHHcCC--
Confidence 678999999999999999999999999999999994321 111223478 99999999 7777888766
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK 255 (439)
|+||||||... ..++...+++|+.++.++++++++.+.. +||++||.+.+.. +.++ .+...|+.+|
T Consensus 86 D~vi~~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~-------~~~~--~~~~~Y~~sK 151 (236)
T 3e8x_A 86 DAVVFAAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSSVGTVDP-------DQGP--MNMRHYLVAK 151 (236)
T ss_dssp SEEEECCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECCTTCSCG-------GGSC--GGGHHHHHHH
T ss_pred CEEEECCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCC-EEEEEecCCCCCC-------CCCh--hhhhhHHHHH
Confidence 99999999743 3678899999999999999999998854 9999999665421 1111 3567999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHh
Q 013602 256 KAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335 (439)
Q Consensus 256 ~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 335 (439)
.++|.+++ +.|+++++||||.|||+.... ..... ......++|++++|+|++++.+++
T Consensus 152 ~~~e~~~~----~~gi~~~~lrpg~v~~~~~~~---------------~~~~~---~~~~~~~~~i~~~Dva~~~~~~~~ 209 (236)
T 3e8x_A 152 RLADDELK----RSSLDYTIVRPGPLSNEESTG---------------KVTVS---PHFSEITRSITRHDVAKVIAELVD 209 (236)
T ss_dssp HHHHHHHH----HSSSEEEEEEECSEECSCCCS---------------EEEEE---SSCSCCCCCEEHHHHHHHHHHHTT
T ss_pred HHHHHHHH----HCCCCEEEEeCCcccCCCCCC---------------eEEec---cCCCcccCcEeHHHHHHHHHHHhc
Confidence 99999887 369999999999999985421 11222 234456889999999999999998
Q ss_pred hchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHH
Q 013602 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILE 374 (439)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~ 374 (439)
.+.. .+++|+++++ .+++.|+++.+.
T Consensus 210 ~~~~------------~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 210 QQHT------------IGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp CGGG------------TTEEEEEEEC-SEEHHHHHHTC-
T ss_pred Cccc------------cCCeEEEeCC-CcCHHHHHHHhc
Confidence 7652 2389999887 599999998764
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=238.96 Aligned_cols=209 Identities=12% Similarity=0.111 Sum_probs=168.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-HHHHHHhhcccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-MALLKKLFDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~d~V 178 (439)
|+||||||+||||++++++|+++|++|++++|+.+.... ..+++++.+|++| .+++.++++++ |+|
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-----------~~~~~~~~~D~~d~~~~~~~~~~~~--d~v 67 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ-----------YNNVKAVHFDVDWTPEEMAKQLHGM--DAI 67 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC-----------CTTEEEEECCTTSCHHHHHTTTTTC--SEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh-----------cCCceEEEecccCCHHHHHHHHcCC--CEE
Confidence 589999999999999999999999999999995432211 1589999999999 99999999976 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
|||||... ...+++|+.++.++++++++.+.. +||++||.++++.. ++.| ++ ..|...|+.+|+++
T Consensus 68 i~~ag~~~--------~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~~---~~~e-~~-~~~~~~Y~~sK~~~ 133 (219)
T 3dqp_A 68 INVSGSGG--------KSLLKVDLYGAVKLMQAAEKAEVK-RFILLSTIFSLQPE---KWIG-AG-FDALKDYYIAKHFA 133 (219)
T ss_dssp EECCCCTT--------SSCCCCCCHHHHHHHHHHHHTTCC-EEEEECCTTTTCGG---GCCS-HH-HHHTHHHHHHHHHH
T ss_pred EECCcCCC--------CCcEeEeHHHHHHHHHHHHHhCCC-EEEEECcccccCCC---cccc-cc-cccccHHHHHHHHH
Confidence 99999743 125668999999999999998854 99999998876532 2333 22 24578999999999
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
|.+++ +..|+++++||||.+||+..... +. + +...++|++++|+|++++.++..+.
T Consensus 134 e~~~~---~~~~i~~~ilrp~~v~g~~~~~~---------------~~-~-----~~~~~~~i~~~Dva~~i~~~l~~~~ 189 (219)
T 3dqp_A 134 DLYLT---KETNLDYTIIQPGALTEEEATGL---------------ID-I-----NDEVSASNTIGDVADTIKELVMTDH 189 (219)
T ss_dssp HHHHH---HSCCCEEEEEEECSEECSCCCSE---------------EE-E-----SSSCCCCEEHHHHHHHHHHHHTCGG
T ss_pred HHHHH---hccCCcEEEEeCceEecCCCCCc---------------cc-c-----CCCcCCcccHHHHHHHHHHHHhCcc
Confidence 99986 34699999999999999854311 11 1 2567789999999999999998765
Q ss_pred hccCCCCCccCCCCCcEEEecCCCcccHHHHHHH
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSI 372 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~ 372 (439)
. .+++||+++++ .++.|+.+.
T Consensus 190 ~------------~g~~~~i~~g~-~~~~e~~~~ 210 (219)
T 3dqp_A 190 S------------IGKVISMHNGK-TAIKEALES 210 (219)
T ss_dssp G------------TTEEEEEEECS-EEHHHHHHT
T ss_pred c------------cCcEEEeCCCC-ccHHHHHHH
Confidence 3 23899998875 999998764
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=239.53 Aligned_cols=258 Identities=15% Similarity=0.169 Sum_probs=187.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
|+||||||||+||++++++|+++ |++|++++|+.+... .....+++++.+|++|++++.++++++ |+|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~---------~~~~~~v~~~~~D~~d~~~l~~~~~~~--d~v 69 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVP---------DDWRGKVSVRQLDYFNQESMVEAFKGM--DTV 69 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSC---------GGGBTTBEEEECCTTCHHHHHHHTTTC--SEE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHH---------HhhhCCCEEEEcCCCCHHHHHHHHhCC--CEE
Confidence 57999999999999999999998 999999999544221 123468999999999999999999987 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
||+||.... ...|+.++.+++++|++.+.. +||++||.+.. . + .+ ..+...+..+
T Consensus 70 i~~a~~~~~----------~~~~~~~~~~l~~aa~~~gv~-~iv~~Ss~~~~---~-------~---~~-~~~~~~~~~~ 124 (289)
T 3e48_A 70 VFIPSIIHP----------SFKRIPEVENLVYAAKQSGVA-HIIFIGYYADQ---H-------N---NP-FHMSPYFGYA 124 (289)
T ss_dssp EECCCCCCS----------HHHHHHHHHHHHHHHHHTTCC-EEEEEEESCCS---T-------T---CC-STTHHHHHHH
T ss_pred EEeCCCCcc----------chhhHHHHHHHHHHHHHcCCC-EEEEEcccCCC---C-------C---CC-CccchhHHHH
Confidence 999986432 134889999999999999854 99999995421 1 0 11 1122222334
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
|..+. +.|+++++||||.+||+.. .++..+..+.... + ..++..++|++++|+|++++.++..+.
T Consensus 125 e~~~~----~~g~~~~ilrp~~~~~~~~-------~~~~~~~~~~~~~-~---~~g~~~~~~i~~~Dva~~~~~~l~~~~ 189 (289)
T 3e48_A 125 SRLLS----TSGIDYTYVRMAMYMDPLK-------PYLPELMNMHKLI-Y---PAGDGRINYITRNDIARGVIAIIKNPD 189 (289)
T ss_dssp HHHHH----HHCCEEEEEEECEESTTHH-------HHHHHHHHHTEEC-C---CCTTCEEEEECHHHHHHHHHHHHHCGG
T ss_pred HHHHH----HcCCCEEEEeccccccccH-------HHHHHHHHCCCEe-c---CCCCceeeeEEHHHHHHHHHHHHcCCC
Confidence 44333 3599999999999999732 2233333333222 2 356889999999999999999998766
Q ss_pred hccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCC-------C-CCCC------------Cccc
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP-------R-NGDV------------PFTH 398 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~-------~-~~~~------------~~~~ 398 (439)
.. +++||++ ++.+|+.|+++.+.+.+|.+..+...+.. . .+.. ....
T Consensus 190 ~~------------g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~ 256 (289)
T 3e48_A 190 TW------------GKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLD 256 (289)
T ss_dssp GT------------TCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHTTTTC
T ss_pred cC------------CceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHCCCcc
Confidence 42 3899999 99999999999999999987665443321 1 1100 0112
Q ss_pred CChHHHHHHcCCCccCcHHHHHHH
Q 013602 399 ANISLAQRELGYKPTTDLQTGLKK 422 (439)
Q Consensus 399 ~d~~k~~~~LG~~p~~~l~e~l~~ 422 (439)
.+....++.+|++|+ +++|-+++
T Consensus 257 ~~~~~~~~~~G~~p~-~~~~~~~~ 279 (289)
T 3e48_A 257 QESNDFKQLVNDQPQ-TLQSFLQE 279 (289)
T ss_dssp CCCSHHHHHHSSCCC-CHHHHHHC
T ss_pred ccCchHHHHhCCCCC-CHHHHHHH
Confidence 345567788999987 77776654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-29 Score=228.39 Aligned_cols=218 Identities=11% Similarity=0.069 Sum_probs=158.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|||||||||||++++++|+++|++|++++|+. .........+++++.+|++|.++ ++++++ |+||
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~---------~~~~~~~~~~~~~~~~D~~d~~~--~~~~~~--d~vi 67 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP---------QKAADRLGATVATLVKEPLVLTE--ADLDSV--DAVV 67 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHTCTTSEEEECCGGGCCH--HHHTTC--SEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc---------cccccccCCCceEEecccccccH--hhcccC--CEEE
Confidence 5799999999999999999999999999999922 12222334689999999999988 777776 9999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC---CCCCCCCCCCCCChHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKV---PFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~---~~~e~~~~~~p~~~Y~~sK~ 256 (439)
||||.... .....+|+.++.++++++++.+ . +||++||.+.+...... +..+...+ .|.+.|+.+|.
T Consensus 68 ~~ag~~~~-------~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~sK~ 137 (224)
T 3h2s_A 68 DALSVPWG-------SGRGYLHLDFATHLVSLLRNSD-T-LAVFILGSASLAMPGADHPMILDFPESA-ASQPWYDGALY 137 (224)
T ss_dssp ECCCCCTT-------SSCTHHHHHHHHHHHHTCTTCC-C-EEEEECCGGGSBCTTCSSCGGGGCCGGG-GGSTTHHHHHH
T ss_pred ECCccCCC-------cchhhHHHHHHHHHHHHHHHcC-C-cEEEEecceeeccCCCCccccccCCCCC-ccchhhHHHHH
Confidence 99997411 1124679999999999999998 4 99999997654432221 22233222 34789999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhh
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
++|.+ ..+.++.|+++++|||+.|||++.... .. ....... .+...++|++++|+|++++.+++.
T Consensus 138 ~~e~~-~~~~~~~~i~~~ivrp~~v~g~~~~~~-~~-------~~~~~~~------~~~~~~~~i~~~DvA~~~~~~l~~ 202 (224)
T 3h2s_A 138 QYYEY-QFLQMNANVNWIGISPSEAFPSGPATS-YV-------AGKDTLL------VGEDGQSHITTGNMALAILDQLEH 202 (224)
T ss_dssp HHHHH-HHHTTCTTSCEEEEEECSBCCCCCCCC-EE-------EESSBCC------CCTTSCCBCCHHHHHHHHHHHHHS
T ss_pred HHHHH-HHHHhcCCCcEEEEcCccccCCCcccC-ce-------ecccccc------cCCCCCceEeHHHHHHHHHHHhcC
Confidence 99954 555555799999999999999954322 00 1111111 123456899999999999999987
Q ss_pred chhccCCCCCccCCCCCcEEEecCCCcccHH
Q 013602 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVS 367 (439)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~ 367 (439)
+.. .+++|++++.+..+..
T Consensus 203 ~~~------------~g~~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 203 PTA------------IRDRIVVRDADLEHHH 221 (224)
T ss_dssp CCC------------TTSEEEEEECC-----
T ss_pred ccc------------cCCEEEEecCcchhcc
Confidence 763 3489999997665554
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=229.73 Aligned_cols=232 Identities=19% Similarity=0.173 Sum_probs=174.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhC--CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRR--GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
+.+|+||||||+||||++++++|+++ |++|++++|+. . ..... ..++.++.+|++|.+++.++++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~-------~--~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~- 70 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA-------Q--GKEKI-GGEADVFIGDITDADSINPAFQGI- 70 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCH-------H--HHHHT-TCCTTEEECCTTSHHHHHHHHTTC-
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCC-------C--chhhc-CCCeeEEEecCCCHHHHHHHHcCC-
Confidence 46789999999999999999999999 89999999932 1 11111 357889999999999999999976
Q ss_pred ccEEEEcccccCccc-------------cccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 175 FTHVMHLAAQAGVRY-------------AMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~-------------~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
|+||||||...... ..++....+++|+.++.++++++++.+.. +||++||.+++...
T Consensus 71 -d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~~~~-------- 140 (253)
T 1xq6_A 71 -DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVGSMGGTNPD-------- 140 (253)
T ss_dssp -SEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEEETTTTCTT--------
T ss_pred -CEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEcCccCCCCC--------
Confidence 99999999753211 11222357899999999999999998854 99999998875311
Q ss_pred CCC-CCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 242 DRT-DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 242 ~~~-~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
.+. ......|+.+|+++|.++++ .|+++++||||.+||+....... ..+....++ + ...++
T Consensus 141 ~~~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~~~--------~~~~~~~~~---~---~~~~~ 202 (253)
T 1xq6_A 141 HPLNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVREL--------LVGKDDELL---Q---TDTKT 202 (253)
T ss_dssp CGGGGGGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSSCE--------EEESTTGGG---G---SSCCE
T ss_pred CccccccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchhhh--------hccCCcCCc---C---CCCcE
Confidence 111 01124588899999998865 59999999999999986532111 111111222 1 12469
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC---cccHHHHHHHHHHHhCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS---PVPVSDLVSILERLLKV 379 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~t~~el~~~l~~~~g~ 379 (439)
++++|+|++++.+++.+.. .+++||+++++ ++|+.|+++.+.+.+|.
T Consensus 203 ~~~~Dva~~~~~~~~~~~~------------~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 203 VPRADVAEVCIQALLFEEA------------KNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp EEHHHHHHHHHHHTTCGGG------------TTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred EcHHHHHHHHHHHHcCccc------------cCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 9999999999999986542 23899999864 59999999999998875
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=225.54 Aligned_cols=218 Identities=14% Similarity=0.206 Sum_probs=143.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|||||||||||++++++|+++|++|++++|+.+ ...... .+++++.+|++|.++ +++.++ |+||
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~---------~~~~~~-~~~~~~~~D~~d~~~--~~~~~~--d~vi 66 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG---------KITQTH-KDINILQKDIFDLTL--SDLSDQ--NVVV 66 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH---------HHHHHC-SSSEEEECCGGGCCH--HHHTTC--SEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch---------hhhhcc-CCCeEEeccccChhh--hhhcCC--CEEE
Confidence 57999999999999999999999999999999431 111112 689999999999988 777766 9999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC-CCCCCCCCCCCCCChHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTK-VPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~-~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
||||.... ...+|+.++.++++++++.+.. +||++||.+.|..... .+..|+.+. .|...|+.+|.+.
T Consensus 67 ~~ag~~~~---------~~~~~~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~~~-~~~~~y~~~k~~~ 135 (221)
T 3ew7_A 67 DAYGISPD---------EAEKHVTSLDHLISVLNGTVSP-RLLVVGGAASLQIDEDGNTLLESKGL-REAPYYPTARAQA 135 (221)
T ss_dssp ECCCSSTT---------TTTSHHHHHHHHHHHHCSCCSS-EEEEECCCC--------------------CCCSCCHHHHH
T ss_pred ECCcCCcc---------ccchHHHHHHHHHHHHHhcCCc-eEEEEecceEEEcCCCCccccccCCC-CCHHHHHHHHHHH
Confidence 99997321 1346999999999999998754 9999999766543332 233444433 5678899999999
Q ss_pred HHHHHHHHh-HhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 259 EEIAHTYNH-IYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 259 E~~~~~~~~-~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
|.+ ..+.. ..|+++++|||+.+|||+..... + ...+..+... +.+ .++++++|+|++++.+++.+
T Consensus 136 e~~-~~~~~~~~gi~~~ivrp~~v~g~~~~~~~----~---~~~~~~~~~~---~~~---~~~i~~~Dva~~~~~~l~~~ 201 (221)
T 3ew7_A 136 KQL-EHLKSHQAEFSWTYISPSAMFEPGERTGD----Y---QIGKDHLLFG---SDG---NSFISMEDYAIAVLDEIERP 201 (221)
T ss_dssp HHH-HHHHTTTTTSCEEEEECSSCCCCC----------------------------------CCCHHHHHHHHHHHHHSC
T ss_pred HHH-HHHHhhccCccEEEEeCcceecCCCccCc----e---Eeccccceec---CCC---CceEeHHHHHHHHHHHHhCc
Confidence 997 34443 56999999999999998432111 0 1122333332 122 36999999999999999987
Q ss_pred hhccCCCCCccCCCCCcEEEecCCCcccHHH
Q 013602 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSD 368 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~e 368 (439)
.. .++.||++++.+.+..|
T Consensus 202 ~~------------~g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 202 NH------------LNEHFTVAGKLEHHHHH 220 (221)
T ss_dssp SC------------TTSEEECCC--------
T ss_pred cc------------cCCEEEECCCCcccccc
Confidence 63 34899999987776654
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=234.98 Aligned_cols=236 Identities=17% Similarity=0.158 Sum_probs=179.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
+|+||||||||+||++++++|+++| ++|++++|+.+.. ....+...+++++.+|++|++++.++++++ |+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~-------~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~--d~ 75 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKK-------AAKELRLQGAEVVQGDQDDQVIMELALNGA--YA 75 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSH-------HHHHHHHTTCEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCH-------HHHHHHHCCCEEEEecCCCHHHHHHHHhcC--CE
Confidence 5799999999999999999999999 9999999954321 111222357999999999999999999987 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a 257 (439)
|||+|+.... . ....|+.++.++++++++.+.. +||++|+.++|+.... .+...|+.+|.+
T Consensus 76 vi~~a~~~~~----~----~~~~~~~~~~~~~~aa~~~gv~-~iv~~S~~~~~~~~~~----------~~~~~y~~sK~~ 136 (299)
T 2wm3_A 76 TFIVTNYWES----C----SQEQEVKQGKLLADLARRLGLH-YVVYSGLENIKKLTAG----------RLAAAHFDGKGE 136 (299)
T ss_dssp EEECCCHHHH----T----CHHHHHHHHHHHHHHHHHHTCS-EEEECCCCCHHHHTTT----------SCCCHHHHHHHH
T ss_pred EEEeCCCCcc----c----cchHHHHHHHHHHHHHHHcCCC-EEEEEcCccccccCCC----------cccCchhhHHHH
Confidence 9999985211 0 1356888999999999998854 9999888888753111 234789999999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHH-HcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhh
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDI-LNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
+|.++++ .|+++++|||+.+||+.... +.... ..+... .+..| .++..++|++++|+|++++.++..
T Consensus 137 ~e~~~~~----~gi~~~ilrp~~~~~~~~~~------~~~~~~~~g~~~-~~~~~-~~~~~~~~i~~~Dva~~~~~~l~~ 204 (299)
T 2wm3_A 137 VEEYFRD----IGVPMTSVRLPCYFENLLSH------FLPQKAPDGKSY-LLSLP-TGDVPMDGMSVSDLGPVVLSLLKM 204 (299)
T ss_dssp HHHHHHH----HTCCEEEEECCEEGGGGGTT------TCCEECTTSSSE-EECCC-CTTSCEEEECGGGHHHHHHHHHHS
T ss_pred HHHHHHH----CCCCEEEEeecHHhhhchhh------cCCcccCCCCEE-EEEec-CCCCccceecHHHHHHHHHHHHcC
Confidence 9999876 49999999999999974320 11001 122211 11112 367789999999999999999986
Q ss_pred chhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccc
Q 013602 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM 386 (439)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~ 386 (439)
+.... +++|++++ +.+|+.|+++.+.+.+|.+..+...
T Consensus 205 ~~~~~-----------g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~ 242 (299)
T 2wm3_A 205 PEKYV-----------GQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKM 242 (299)
T ss_dssp HHHHT-----------TCEEECCS-EEECHHHHHHHHHHHHSSCEEECCC
T ss_pred hhhhC-----------CeEEEeee-ccCCHHHHHHHHHHHHCCCceeEec
Confidence 53221 27999986 6799999999999999987665443
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=226.88 Aligned_cols=244 Identities=14% Similarity=0.133 Sum_probs=179.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.. .......+.....++.++.+|++|.++++++++.+
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 89 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD----HGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAK 89 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChh----HHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998321 11111111111237899999999999999998754
Q ss_pred --CccEEEEcccccCc------cccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+. + .++||++||...|....
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~~------- 161 (278)
T 2bgk_A 90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSFTAGE------- 161 (278)
T ss_dssp HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGTCCCT-------
T ss_pred cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CCeEEEEeeccccCCCC-------
Confidence 67999999997532 1123455679999999999999988653 3 34999999988765211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCCh-HHHHHHHHHcCCCCceeecCCCCcce
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMA-YFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
.+...|+.+|.+.|.+++.++.+ .|+++++||||.|+|+....... .......+...... ..
T Consensus 162 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~----------~~ 227 (278)
T 2bgk_A 162 ----GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAAN----------LK 227 (278)
T ss_dssp ----TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCS----------SC
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcccc----------cc
Confidence 14568999999999999999887 48999999999999986542110 11222222221111 12
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHH
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERL 376 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~ 376 (439)
..+++++|+|++++.++...... ..|++|++.++..+++.|+++.+.+.
T Consensus 228 ~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~~~~~~e~~~~i~~~ 276 (278)
T 2bgk_A 228 GTLLRAEDVADAVAYLAGDESKY----------VSGLNLVIDGGYTRTNPAFPTALKHG 276 (278)
T ss_dssp SCCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGCCTHHHHHSCSC
T ss_pred cccCCHHHHHHHHHHHcCccccc----------CCCCEEEECCcccccCCccchhhhhh
Confidence 34789999999999998754321 23489999999999999999887653
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=233.24 Aligned_cols=247 Identities=18% Similarity=0.123 Sum_probs=181.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhc----CCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLER----SGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+++|+||||||+||||++++++|+++|++|++++|+.+. ......+.... ..+.++.+|++|.++++++++.
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 84 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDK----LAGAVQELEALGANGGAIRYEPTDITNEDETARAVDA 84 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 11111111111 2688999999999999999887
Q ss_pred c-----CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
+ ++|+||||||.... ..+.++++..+++|+.|+.++++++.+.. ...+||++||...+..
T Consensus 85 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 157 (281)
T 3svt_A 85 VTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNT------- 157 (281)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSC-------
T ss_pred HHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCC-------
Confidence 6 78999999997322 22344567899999999999998875321 1239999999776531
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
..+...|+.||++.+.+++.++.++ |+++++|+||.|+++..........+...+....+.
T Consensus 158 -----~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~----------- 221 (281)
T 3svt_A 158 -----HRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPL----------- 221 (281)
T ss_dssp -----CTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCSS-----------
T ss_pred -----CCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCCC-----------
Confidence 1346799999999999999999885 699999999999987432100001122222222222
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc-HHHHHHHHHHHhCCcc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP-VSDLVSILERLLKVKA 381 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t-~~el~~~l~~~~g~~~ 381 (439)
..+.+++|+|++++.++...... ..|++|++.+|..++ ..|+...+.+.+|.+.
T Consensus 222 -~r~~~~~dva~~~~~l~s~~~~~----------itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~ 276 (281)
T 3svt_A 222 -PRQGEVEDVANMAMFLLSDAASF----------VTGQVINVDGGQMLRRGPDFSAMLEPVFGRDA 276 (281)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred -CCCCCHHHHHHHHHHHhCcccCC----------CCCCEEEeCCChhcccCCcchhccccccCCcc
Confidence 23567999999999998765432 345899999988777 7789999999988654
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=231.13 Aligned_cols=246 Identities=16% Similarity=0.086 Sum_probs=176.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+||||||+||||++++++|+++|++|++++|+.+. ...... ....++.++.+|++|.++++++++.+
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~--~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEA----LDDLVA--AYPDRAEAISLDVTDGERIDVVAADVLAR 76 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGG----GHHHHH--HCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH--hccCCceEEEeeCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999995432 111111 12357999999999999999998865
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAG----LVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~g----t~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.| ++.+++.+++.+. ++||++||...+.
T Consensus 77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~------------ 143 (281)
T 3m1a_A 77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGS-GSVVNISSFGGQL------------ 143 (281)
T ss_dssp HSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTC------------
T ss_pred CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEEcCccccC------------
Confidence 789999999975432 2344566789999999 5555555566664 3999999977643
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCC-----hHHHHHHHHHcCCCCceeecCCCCc
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDM-----AYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
...+...|+.||++.|.+++.++.+ +|+++++|+||.|+++...... ....+........... ...
T Consensus 144 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 217 (281)
T 3m1a_A 144 SFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLV------QGS 217 (281)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHH------HC-
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHH------hhc
Confidence 1245689999999999999999988 6999999999999887532111 0011111111111110 112
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCc
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVK 380 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~ 380 (439)
....+.+++|+|++++.+++.+.. +..|+++++....+.+....+.+.++..
T Consensus 218 ~~~~~~~~~dva~a~~~~~~~~~~-------------~~~~~l~s~~~~~i~g~~~~i~~~~~~~ 269 (281)
T 3m1a_A 218 DGSQPGDPAKAAAAIRLALDTEKT-------------PLRLALGGDAVDFLTGHLDSVRAELTEW 269 (281)
T ss_dssp ----CBCHHHHHHHHHHHHHSSSC-------------CSEEEESHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCC-------------CeEEecCchHHHHHHHHHHHHHHHHHHH
Confidence 234578899999999999987642 2689999877777788888887776643
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=219.66 Aligned_cols=226 Identities=19% Similarity=0.150 Sum_probs=166.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
+++|+||||||+||||++++++|+++|++|++++|+.+ ..........+++++.+|++|.++++++++.. ++
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS-------DLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH-------HHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH-------HHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCC
Confidence 67899999999999999999999999999999999321 11111111246788899999999999999865 57
Q ss_pred cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 176 d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p 247 (439)
|+||||||..... .+.++++..+++|+.|+.++++++.+. +..++||++||...|.. ..+
T Consensus 78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~ 145 (244)
T 1cyd_A 78 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT------------FPN 145 (244)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------CTT
T ss_pred CEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCC------------CCC
Confidence 9999999975432 223455679999999999998887643 31249999999887642 134
Q ss_pred CChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
...|+.+|++.|.+++.++++ .|++++++|||.|+|+..........+...+..+.+ .++|++++
T Consensus 146 ~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 213 (244)
T 1cyd_A 146 LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHP------------LRKFAEVE 213 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHST------------TSSCBCHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhcCC------------ccCCCCHH
Confidence 578999999999999999887 489999999999998743210001122232322221 24689999
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
|+|++++.++...... ..|+.+++.++..
T Consensus 214 dva~~~~~l~~~~~~~----------~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 214 DVVNSILFLLSDRSAS----------TSGGGILVDAGYL 242 (244)
T ss_dssp HHHHHHHHHHSGGGTT----------CCSSEEEESTTGG
T ss_pred HHHHHHHHHhCchhhc----------ccCCEEEECCCcc
Confidence 9999999999765422 2348899887653
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=222.91 Aligned_cols=236 Identities=14% Similarity=0.094 Sum_probs=169.8
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.+.+|+||||||+||||++++++|+++|++|++++|+.+ ........ ....+.++.+|++|.++++++++.+
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~ 78 (259)
T 4e6p_A 5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIE-----RARQAAAE-IGPAAYAVQMDVTRQDSIDAAIAATVE 78 (259)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHH-HCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHH-hCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999321 11111111 1357899999999999999988865
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. +...+||++||...+..
T Consensus 79 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 148 (259)
T 4e6p_A 79 HAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRG---------- 148 (259)
T ss_dssp HSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccC----------
Confidence 689999999985432 234556788999999999999887533 21239999999776431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCC---CceeecCCCCcc
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKS---IPIFESPDHGTV 316 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~ 316 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|++|.... ...+......... ...+ .....
T Consensus 149 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~p 220 (259)
T 4e6p_A 149 --EALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDG---VDALFARYENRPRGEKKRLV---GEAVP 220 (259)
T ss_dssp --CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHH---HHHHHHHHHTCCTTHHHHHH---HHHST
T ss_pred --CCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhh---hhhhhhhhccCChHHHHHHH---hccCC
Confidence 1345789999999999999999885 8999999999999985321 1111111111110 0111 11223
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
...+.+++|+|++++.++...... ..|++|++.+|..+|
T Consensus 221 ~~r~~~~~dva~~v~~L~s~~~~~----------itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 221 FGRMGTAEDLTGMAIFLASAESDY----------IVSQTYNVDGGNWMS 259 (259)
T ss_dssp TSSCBCTHHHHHHHHHTTSGGGTT----------CCSCEEEESTTSSCC
T ss_pred CCCCcCHHHHHHHHHHHhCCccCC----------CCCCEEEECcChhcC
Confidence 456899999999999888654432 345899999887554
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=219.83 Aligned_cols=230 Identities=15% Similarity=0.163 Sum_probs=170.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+ .......+.. ...++.++.+|++|.++++++++.+
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 84 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD----AANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999432 1111111111 1347889999999999999988743
Q ss_pred ---CccEEEEcccccCcc---ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR---YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~---~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 85 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~----------- 152 (255)
T 1fmc_A 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG-GVILTITSMAAENK----------- 152 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTCC-----------
T ss_pred hcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhcCC-----------
Confidence 679999999975432 2344567899999999999988874 3443 49999999887642
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
..+...|+.+|.+.|.+++.++.++ |+++++++||.|+++..... ....+...+..+.+. ..|
T Consensus 153 -~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~------------~~~ 218 (255)
T 1fmc_A 153 -NINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV-ITPEIEQKMLQHTPI------------RRL 218 (255)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-CCHHHHHHHHHTCSS------------CSC
T ss_pred -CCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhc-cChHHHHHHHhcCCc------------ccC
Confidence 1356789999999999999998875 89999999999998743211 112233333333322 236
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccH
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPV 366 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~ 366 (439)
.+++|+|++++.++...... ..|++|+++++..+|+
T Consensus 219 ~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 219 GQPQDIANAALFLCSPAASW----------VSGQILTVSGGGVQEL 254 (255)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSCCCC
T ss_pred CCHHHHHHHHHHHhCCcccc----------CCCcEEEECCceeccC
Confidence 78999999999998754321 2348999999887764
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=225.12 Aligned_cols=242 Identities=14% Similarity=0.114 Sum_probs=163.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh----hhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL----LERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ .......+. ....++.++.+|++|.++++++++.
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE----RLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILST 79 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHH
Confidence 67899999999999999999999999999999999432 111111111 1124688999999999999998885
Q ss_pred c-----CccEEEEcccccCcc----c----cccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcc-cCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR----Y----AMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSV-YGLNT 234 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~----~----~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v-~g~~~ 234 (439)
+ ++|+||||||..... . +.++++..+++|+.|+.++++++.+. + ++||++||... +..
T Consensus 80 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~~-- 155 (278)
T 1spx_A 80 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLHA-- 155 (278)
T ss_dssp HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTTSSSSC--
T ss_pred HHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEecccccccC--
Confidence 4 679999999975332 1 34456688999999999998887653 4 49999999775 431
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCC----hH---HHHHHHHHcCCC
Q 013602 235 KVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDM----AY---FFFTRDILNRKS 304 (439)
Q Consensus 235 ~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~----~~---~~~~~~~~~g~~ 304 (439)
..+...|+.+|++.+.+++.++.+ +|+++++|+||.|+++...... .. ......+....
T Consensus 156 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~- 224 (278)
T 1spx_A 156 ----------TPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECV- 224 (278)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHC-
T ss_pred ----------CCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcC-
Confidence 134568999999999999999877 4899999999999988532110 00 00011111111
Q ss_pred CceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHh
Q 013602 305 IPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLL 377 (439)
Q Consensus 305 ~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~ 377 (439)
+ ...+.+++|+|++++.++..+.... ..|++|++.+|..+++.|+++++.+.+
T Consensus 225 -p----------~~~~~~~~dvA~~v~~l~s~~~~~~---------~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 225 -P----------AGVMGQPQDIAEVIAFLADRKTSSY---------IIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp -T----------TSSCBCHHHHHHHHHHHHCHHHHTT---------CCSCEEEESTTGGGC------------
T ss_pred -C----------CcCCCCHHHHHHHHHHHcCccccCc---------ccCcEEEECCCcccccCcccccHHHHh
Confidence 1 1237889999999999987654310 123899999999999999999988764
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=223.18 Aligned_cols=206 Identities=11% Similarity=0.029 Sum_probs=163.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.+|+||||||+|+||++++++|+++|+ +|++++|+... ...+++++.+|++|.+++.+++ +
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-------------~~~~~~~~~~D~~~~~~~~~~~----~ 66 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------------EHPRLDNPVGPLAELLPQLDGS----I 66 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------------CCTTEECCBSCHHHHGGGCCSC----C
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-------------cCCCceEEeccccCHHHHHHhh----h
Confidence 457999999999999999999999998 99999996543 1347888999999999888877 5
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK 255 (439)
|+||||||... ....+++..+++|+.++.++++++++.+.. +||++||.++|+ .+...|+.+|
T Consensus 67 d~vi~~a~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~--------------~~~~~y~~sK 129 (215)
T 2a35_A 67 DTAFCCLGTTI--KEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGADA--------------KSSIFYNRVK 129 (215)
T ss_dssp SEEEECCCCCH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHHH
T ss_pred cEEEECeeecc--ccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECCcccCC--------------CCccHHHHHH
Confidence 99999999643 234677889999999999999999998854 999999999875 2457899999
Q ss_pred HHHHHHHHHHHhHhCCc-EEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHH
Q 013602 256 KAGEEIAHTYNHIYGLS-LTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334 (439)
Q Consensus 256 ~a~E~~~~~~~~~~gi~-~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 334 (439)
.++|.++++ .|++ ++++||+.+|||+.... . ...+. +...+.. . ..++|+|++|+|++++.++
T Consensus 130 ~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~-~----~~~~~-~~~~~~~----~--~~~~~i~~~Dva~~~~~~~ 193 (215)
T 2a35_A 130 GELEQALQE----QGWPQLTIARPSLLFGPREEFR-L----AEILA-APIARIL----P--GKYHGIEACDLARALWRLA 193 (215)
T ss_dssp HHHHHHHTT----SCCSEEEEEECCSEESTTSCEE-G----GGGTT-CCCC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCeEEEEeCceeeCCCCcch-H----HHHHH-Hhhhhcc----C--CCcCcEeHHHHHHHHHHHH
Confidence 999999876 4899 99999999999976521 1 11111 2222221 2 2678999999999999999
Q ss_pred hhchhccCCCCCccCCCCCcEEEecCCCcccHH
Q 013602 335 DTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVS 367 (439)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~ 367 (439)
+.+. +++||+++++.+++.
T Consensus 194 ~~~~--------------~~~~~i~~~~~~~~~ 212 (215)
T 2a35_A 194 LEEG--------------KGVRFVESDELRKLG 212 (215)
T ss_dssp TCCC--------------SEEEEEEHHHHHHHH
T ss_pred hcCC--------------CCceEEcHHHHHHhh
Confidence 8654 179999987666553
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=226.28 Aligned_cols=245 Identities=12% Similarity=0.087 Sum_probs=177.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+||||++++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.++++++++.+
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDV----LKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELI 99 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 111111111 1357899999999999999988876
Q ss_pred ----CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+. ...++||++||...+..
T Consensus 100 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~--------- 170 (302)
T 1w6u_A 100 KVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETG--------- 170 (302)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHC---------
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccC---------
Confidence 68999999997433 2234456789999999999998887532 22349999999866531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCC-hHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDM-AYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|++.|.+++.++.+ .|+++++||||.|+++...... .-......+..+.+.
T Consensus 171 ---~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p~------------ 235 (302)
T 1w6u_A 171 ---SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPC------------ 235 (302)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTT------------
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCCc------------
Confidence 135678999999999999999888 5899999999999987321110 000111222222221
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKV 379 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~ 379 (439)
..+.+++|+|++++.++...... ..|++|++.++..+++.++++.+.+..|.
T Consensus 236 ~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 236 GRLGTVEELANLAAFLCSDYASW----------INGAVIKFDGGEEVLISGEFNDLRKVTKE 287 (302)
T ss_dssp SSCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTHHHHHHSTTGGGGGCCHH
T ss_pred CCCCCHHHHHHHHHHHcCCcccc----------cCCCEEEECCCeeeccCCccccchhhccc
Confidence 13678999999999998754321 23489999999888888888887776664
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=217.46 Aligned_cols=224 Identities=17% Similarity=0.084 Sum_probs=169.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+.. .....+ . ..++.++.+|++|.++++++++.+
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----~~~~~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (271)
T 3tzq_B 9 LENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDL----AGAAAS-V-GRGAVHHVVDLTNEVSVRALIDFTIDT 82 (271)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCH----HHHHHH-H-CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHH----HHHHHH-h-CCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999965421 111111 1 457899999999999999998865
Q ss_pred --CccEEEEcccccCc------cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~--------- 152 (271)
T 3tzq_B 83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGG-GAIVNISSATAHAA--------- 152 (271)
T ss_dssp HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTSB---------
T ss_pred cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEECCHHHcCC---------
Confidence 68999999998632 2234556789999999999999988 55553 49999999876531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
..+...|+.+|.+.+.+++.++.+ +|+++++|+||.|++|...... ...+...+....+..
T Consensus 153 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~~------------ 216 (271)
T 3tzq_B 153 ---YDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGL-PQPIVDIFATHHLAG------------ 216 (271)
T ss_dssp ---CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC----CHHHHHHHHTTSTTS------------
T ss_pred ---CCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccC-CHHHHHHHHhcCCCC------------
Confidence 134678999999999999999988 5899999999999998654211 112233333332221
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+..++|+|++++.++...... ..|+++++.+|.
T Consensus 217 r~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 250 (271)
T 3tzq_B 217 RIGEPHEIAELVCFLASDRAAF----------ITGQVIAADSGL 250 (271)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred CCcCHHHHHHHHHHHhCcccCC----------cCCCEEEECCCc
Confidence 2567899999999998765432 345899998873
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=213.90 Aligned_cols=226 Identities=19% Similarity=0.168 Sum_probs=164.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
+.+|+||||||+||||++++++|+++|++|++++|+.+ ..........++.++.+|++|.++++++++.. ++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA-------DLDSLVRECPGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH-------HHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH-------HHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999999321 11111111236788899999999999999865 57
Q ss_pred cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 176 d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p 247 (439)
|+||||||..... .+.++++..+++|+.++.++++++.+. +..++||++||...+.. ..+
T Consensus 78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~ 145 (244)
T 3d3w_A 78 DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRA------------VTN 145 (244)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------CTT
T ss_pred CEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccC------------CCC
Confidence 9999999975432 123445689999999998888887643 31349999999876532 134
Q ss_pred CChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
...|+.+|++.|.+++.++.++ |+++++|+||.|+++..............+..+. ....+++++
T Consensus 146 ~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 213 (244)
T 3d3w_A 146 HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRI------------PLGKFAEVE 213 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTC------------TTCSCBCHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHhhC------------CCCCCcCHH
Confidence 6789999999999999998874 8999999999999975320000001111122211 123578999
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
|+|++++.++...... ..|++|++.++..
T Consensus 214 dva~~~~~l~~~~~~~----------~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 214 HVVNAILFLLSDRSGM----------TTGSTLPVEGGFW 242 (244)
T ss_dssp HHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred HHHHHHHHHcCccccC----------CCCCEEEECCCcc
Confidence 9999999998754321 2348999988754
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=221.76 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=172.0
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCC-------h-hHHHHHHH-hhhcCCeEEEEcccCCHHH
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD-------P-SLKKARQA-LLERSGIFIVEGDINDMAL 165 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~-------~-~~~~~~~~-~~~~~~v~~~~~Dl~d~~~ 165 (439)
..+++|++|||||+|+||++++++|+++|++|++++|+..... . ........ ......+.++.+|++|.++
T Consensus 6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 85 (281)
T 3s55_A 6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAA 85 (281)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 3468899999999999999999999999999999999643210 1 11111111 1123578999999999999
Q ss_pred HHHhhccc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCC
Q 013602 166 LKKLFDVV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGL 232 (439)
Q Consensus 166 ~~~~~~~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~ 232 (439)
++++++.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~ 164 (281)
T 3s55_A 86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNY-GRIVTVSSMLGHSA 164 (281)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGGSC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECChhhcCC
Confidence 99998865 789999999985432 2345567899999999999998863 3443 39999999776531
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCC---Cc
Q 013602 233 NTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKS---IP 306 (439)
Q Consensus 233 ~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~---~~ 306 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|++|..........+......... ..
T Consensus 165 ------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (281)
T 3s55_A 165 ------------NFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVES 232 (281)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHH
T ss_pred ------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHHH
Confidence 1356789999999999999999874 89999999999999865421100000000000000 00
Q ss_pred eeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 307 IFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 307 ~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
.+. ........|.+++|+|++++.++...... ..|+++++.+|...+
T Consensus 233 ~~~--~~~~~~~~~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 233 VFA--SLHLQYAPFLKPEEVTRAVLFLVDEASSH----------ITGTVLPIDAGATAR 279 (281)
T ss_dssp HHH--HHCSSSCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGG
T ss_pred HHH--hhhccCcCCCCHHHHHHHHHHHcCCcccC----------CCCCEEEECCCcccC
Confidence 000 00112256899999999999998765532 345899999886554
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=215.71 Aligned_cols=216 Identities=15% Similarity=0.152 Sum_probs=165.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
..+|+||||||+||||++++++|+++|++|++++|+..... ...+.++.+|++|+++++++++.+
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 93 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA------------DPDIHTVAGDISKPETADRIVREGIER 93 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS------------STTEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc------------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999654321 237899999999999999998865
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+...
T Consensus 94 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~---------- 162 (260)
T 3un1_A 94 FGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGS-GHIVSITTSLVDQPM---------- 162 (260)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCTTTTSCB----------
T ss_pred CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEEechhhccCC----------
Confidence 689999999975432 234456788999999999999887 44443 499999998765321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
...+...|+.||++.+.+++.++.++ |+++++|+||.|++|..... ....+....+ ...+
T Consensus 163 ~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-----~~~~~~~~~p------------~~r~ 225 (260)
T 3un1_A 163 VGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE-----THSTLAGLHP------------VGRM 225 (260)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG-----GHHHHHTTST------------TSSC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH-----HHHHHhccCC------------CCCC
Confidence 11356789999999999999999986 89999999999999864321 1111222222 2236
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
.+++|+|++++.+.+ ... ..|++|++.+|...
T Consensus 226 ~~~~dva~av~~L~~-~~~-----------itG~~i~vdGG~~~ 257 (260)
T 3un1_A 226 GEIRDVVDAVLYLEH-AGF-----------ITGEILHVDGGQNA 257 (260)
T ss_dssp BCHHHHHHHHHHHHH-CTT-----------CCSCEEEESTTGGG
T ss_pred cCHHHHHHHHHHhcc-cCC-----------CCCcEEEECCCeec
Confidence 789999999999832 222 34589999887654
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=218.07 Aligned_cols=245 Identities=14% Similarity=0.111 Sum_probs=172.8
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCC-------hhH-HHHHHH-hhhcCCeEEEEcccCCHHHH
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD-------PSL-KKARQA-LLERSGIFIVEGDINDMALL 166 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~-------~~~-~~~~~~-~~~~~~v~~~~~Dl~d~~~~ 166 (439)
.+.+|+||||||+|+||++++++|+++|++|++++|+..... ... ...... .....++.++.+|++|.+++
T Consensus 10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 368899999999999999999999999999999998632111 111 111111 11235799999999999999
Q ss_pred HHhhccc-----CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCC
Q 013602 167 KKLFDVV-----SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 167 ~~~~~~~-----~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~ 237 (439)
+++++.+ ++|+||||||+.......++++..+++|+.|+.++++++.. .+...+||++||...+....
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--- 166 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG--- 166 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC---
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc---
Confidence 9998865 68999999998655445567789999999999999988643 33234999999976543210
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCC
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
....+...|+.+|++.+.+++.++.++ |+++++|+||.|+++..........+............+ +..
T Consensus 167 -----~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 238 (278)
T 3sx2_A 167 -----SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAM---GNA 238 (278)
T ss_dssp -----CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTT---SCS
T ss_pred -----cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhh---hhh
Confidence 011234679999999999999999885 799999999999998654211111111111222211111 122
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.. ..+++++|+|++++.++...... ..|+++++.+|.
T Consensus 239 ~p-~~~~~p~dvA~~v~~l~s~~~~~----------itG~~i~vdGG~ 275 (278)
T 3sx2_A 239 MP-VEVLAPEDVANAVAWLVSDQARY----------ITGVTLPVDAGF 275 (278)
T ss_dssp SS-CSSBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTT
T ss_pred cC-cCcCCHHHHHHHHHHHhCccccc----------ccCCEEeECCCc
Confidence 22 56889999999999998765432 345899998764
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-27 Score=217.48 Aligned_cols=200 Identities=12% Similarity=0.063 Sum_probs=155.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
+.+|+||||||+||||++++++|+++|+ +|++++|+.+..... ...++.++.+|++|.+++.++++++
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~---------~~~~~~~~~~D~~d~~~~~~~~~~~- 85 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE---------AYKNVNQEVVDFEKLDDYASAFQGH- 85 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG---------GGGGCEEEECCGGGGGGGGGGGSSC-
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcccc---------ccCCceEEecCcCCHHHHHHHhcCC-
Confidence 5678999999999999999999999999 999999976543321 1236889999999999999999866
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|+||||||..... .+++..+++|+.++.++++++++.+. ++||++||.++|+ .+...|+.+
T Consensus 86 -d~vi~~ag~~~~~---~~~~~~~~~n~~~~~~~~~~~~~~~~-~~iv~~SS~~~~~--------------~~~~~Y~~s 146 (242)
T 2bka_A 86 -DVGFCCLGTTRGK---AGAEGFVRVDRDYVLKSAELAKAGGC-KHFNLLSSKGADK--------------SSNFLYLQV 146 (242)
T ss_dssp -SEEEECCCCCHHH---HHHHHHHHHHTHHHHHHHHHHHHTTC-CEEEEECCTTCCT--------------TCSSHHHHH
T ss_pred -CEEEECCCccccc---CCcccceeeeHHHHHHHHHHHHHCCC-CEEEEEccCcCCC--------------CCcchHHHH
Confidence 9999999964322 33567899999999999999998875 4999999999875 234689999
Q ss_pred HHHHHHHHHHHHhHhCC-cEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGL-SLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAA 333 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi-~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 333 (439)
|.++|.+++. .++ ++++||||.||||...+ .....+........+. .+ ....+++++|+|++++.+
T Consensus 147 K~~~e~~~~~----~~~~~~~~vrpg~v~~~~~~~-~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~dva~~~~~~ 213 (242)
T 2bka_A 147 KGEVEAKVEE----LKFDRYSVFRPGVLLCDRQES-RPGEWLVRKFFGSLPD-SW-------ASGHSVPVVTVVRAMLNN 213 (242)
T ss_dssp HHHHHHHHHT----TCCSEEEEEECCEEECTTGGG-SHHHHHHHHHHCSCCT-TG-------GGGTEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHh----cCCCCeEEEcCceecCCCCCC-cHHHHHHHHhhcccCc-cc-------cCCcccCHHHHHHHHHHH
Confidence 9999999876 478 59999999999996532 1222233333332221 11 112489999999999999
Q ss_pred Hhhch
Q 013602 334 LDTAE 338 (439)
Q Consensus 334 l~~~~ 338 (439)
+..+.
T Consensus 214 ~~~~~ 218 (242)
T 2bka_A 214 VVRPR 218 (242)
T ss_dssp HTSCC
T ss_pred HhCcc
Confidence 98655
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=221.18 Aligned_cols=230 Identities=17% Similarity=0.093 Sum_probs=164.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--Ccc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--SFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d 176 (439)
+|+||||||+||||++++++|+++|++|++++|+.+... . .+.+|++|.++++++++.. ++|
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~------------~----~~~~D~~~~~~~~~~~~~~~~~~d 64 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIE------------A----DLSTPGGRETAVAAVLDRCGGVLD 64 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE------------C----CTTSHHHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHcc------------c----cccCCcccHHHHHHHHHHcCCCcc
Confidence 368999999999999999999999999999999554211 0 1678999999999999855 679
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCC-C-------CCCCC--
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA---NPQPAIVWASSSSVYGLNTKVP-F-------SEKDR-- 243 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~---~~~~~~V~~SS~~v~g~~~~~~-~-------~e~~~-- 243 (439)
+||||||.... ..+++..+++|+.|+.++++++.+. ...++||++||..+|+.....+ . +|+.+
T Consensus 65 ~vi~~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (255)
T 2dkn_A 65 GLVCCAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIE 141 (255)
T ss_dssp EEEECCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHH
T ss_pred EEEECCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhh
Confidence 99999997532 3567899999999999999988654 1134999999999886432110 0 00000
Q ss_pred ----CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 244 ----TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 244 ----~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
...+...|+.+|++.|.+++.++++ .|++++++|||.|+|+... .+......+.....+ .+ .
T Consensus 142 ~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~------~~~~~~~~~~~~~~~----~~-~ 210 (255)
T 2dkn_A 142 LAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQ------ASKADPRYGESTRRF----VA-P 210 (255)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHH------HHHHCTTTHHHHHSC----CC-T
T ss_pred hccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhh------hcccchhhHHHHHHH----HH-H
Confidence 0024578999999999999998877 5999999999999997321 110000000000011 01 3
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHH
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSD 368 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~e 368 (439)
..+|++++|+|++++.++...... ..|++|+++++..+++.|
T Consensus 211 ~~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 211 LGRGSEPREVAEAIAFLLGPQASF----------IHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTHHHHHCT
T ss_pred hcCCCCHHHHHHHHHHHhCCCccc----------ceeeEEEecCCeEeeeec
Confidence 346899999999999999865321 234899999987776644
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=224.99 Aligned_cols=240 Identities=16% Similarity=0.217 Sum_probs=175.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|+|+||||||+||++++++|+++|++|++++|+.+...+.... ....+...+++++.+|++|++++.++++++ |+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~--d~v 80 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQ-MLLYFKQLGAKLIEASLDDHQRLVDALKQV--DVV 80 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHH-HHHHHHTTTCEEECCCSSCHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHH-HHHHHHhCCeEEEeCCCCCHHHHHHHHhCC--CEE
Confidence 57899999999999999999999999999999965432222111 112223568999999999999999999987 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCC-CChHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTDQP-ASLYAATKK 256 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p-~~~Y~~sK~ 256 (439)
||+|+..... .|+.++.+++++|++.+ .. +||+ | +||...... +... .| ...| .+|.
T Consensus 81 i~~a~~~~~~-----------~~~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~~~~---~~~~-~p~~~~y-~sK~ 139 (313)
T 1qyd_A 81 ISALAGGVLS-----------HHILEQLKLVEAIKEAGNIK-RFLP-S---EFGMDPDIM---EHAL-QPGSITF-IDKR 139 (313)
T ss_dssp EECCCCSSSS-----------TTTTTHHHHHHHHHHSCCCS-EEEC-S---CCSSCTTSC---CCCC-SSTTHHH-HHHH
T ss_pred EECCccccch-----------hhHHHHHHHHHHHHhcCCCc-eEEe-c---CCcCCcccc---ccCC-CCCcchH-HHHH
Confidence 9999864321 26778899999999998 54 8885 4 444322111 1111 23 4568 9999
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHH----HHcCCCCceeecCCCCcceeeeeeHHHHHHHHHH
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRD----ILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLA 332 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 332 (439)
++|.++++ .|+++++|||+.++|+.... +... ...++.+..+ ++++..++|++++|+|++++.
T Consensus 140 ~~e~~~~~----~g~~~~ilrp~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~~~Dva~~~~~ 206 (313)
T 1qyd_A 140 KVRRAIEA----ASIPYTYVSSNMFAGYFAGS------LAQLDGHMMPPRDKVLIY---GDGNVKGIWVDEDDVGTYTIK 206 (313)
T ss_dssp HHHHHHHH----TTCCBCEEECCEEHHHHTTT------SSCTTCCSSCCSSEECCB---TTSCSEEEEECHHHHHHHHHH
T ss_pred HHHHHHHh----cCCCeEEEEeceeccccccc------cccccccccCCCCeEEEe---CCCCceEEEEEHHHHHHHHHH
Confidence 99998864 59999999999998753210 0000 0122333333 567889999999999999999
Q ss_pred HHhhchhccCCCCCccCCCCCcEEEecC-CCcccHHHHHHHHHHHhCCcccccccc
Q 013602 333 ALDTAEKSTGSGGKKRGRAQLRVFNLGN-TSPVPVSDLVSILERLLKVKAKRNIMK 387 (439)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~t~~el~~~l~~~~g~~~~~~~~~ 387 (439)
++..+.. .++.|++.+ ++.+|+.|+++.+.+.+|.+.++...+
T Consensus 207 ~l~~~~~------------~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 250 (313)
T 1qyd_A 207 SIDDPQT------------LNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250 (313)
T ss_dssp HTTCGGG------------SSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred HHhCccc------------CCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECC
Confidence 9986642 127788876 478999999999999999887665554
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-26 Score=212.52 Aligned_cols=229 Identities=16% Similarity=0.067 Sum_probs=165.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+||||++++++|+++|++|++++|+.+. ......... ...++.++.+|++|.++++++++.+
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAM----ATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHE 86 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 111111111 1346899999999999999988754
Q ss_pred ---CccEEEEcccccC-cc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAG-VR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~-~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||... .. .+.+++...+++|+.|+.++++++.+ .+. ++||++||...+...
T Consensus 87 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~~~-------- 157 (260)
T 3awd_A 87 QEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQ-GVIVAIGSMSGLIVN-------- 157 (260)
T ss_dssp HHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC--------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCC-CEEEEEecchhcccC--------
Confidence 6799999999754 11 12334567899999999999988764 343 399999997654321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
+..+...|+.+|.+.|.+++.++.+ .|+++++||||.|+++..........+...+..+.+. .
T Consensus 158 --~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~ 223 (260)
T 3awd_A 158 --RPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPM------------G 223 (260)
T ss_dssp --SSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCTT------------S
T ss_pred --CCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCCc------------C
Confidence 1123478999999999999999888 5899999999999998643100011223333333221 2
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+++++|+|++++.++...... ..|++|++.++.
T Consensus 224 ~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~ 257 (260)
T 3awd_A 224 RVGQPDEVASVVQFLASDAASL----------MTGAIVNVDAGF 257 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred CCCCHHHHHHHHHHHhCchhcc----------CCCcEEEECCce
Confidence 3788999999999998764321 234899998864
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-27 Score=228.55 Aligned_cols=238 Identities=16% Similarity=0.166 Sum_probs=175.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcc-cCCHHHHHHhhcccCcc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD-INDMALLKKLFDVVSFT 176 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D-l~d~~~~~~~~~~~~~d 176 (439)
.+|+|||||||||||++++++|+++|++|++++|+.+.. . ........+++++.+| ++|.+++.++++++ |
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~----~--~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~--d 75 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL----I--AEELQAIPNVTLFQGPLLNNVPLMDTLFEGA--H 75 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH----H--HHHHHTSTTEEEEESCCTTCHHHHHHHHTTC--S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChh----h--HHHHhhcCCcEEEECCccCCHHHHHHHHhcC--C
Confidence 467899999999999999999999999999999965421 0 0111123479999999 99999999999987 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc--ccCCCCCCCCCCCCCCCCCCChHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSS--VYGLNTKVPFSEKDRTDQPASLYAA 253 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~--v~g~~~~~~~~e~~~~~~p~~~Y~~ 253 (439)
+||||++... . +.|..+ .++++++++.+ .. +||++||.+ .|+. .+...|+.
T Consensus 76 ~Vi~~a~~~~-----~------~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~~~~~~~~-------------~~~~~y~~ 129 (352)
T 1xgk_A 76 LAFINTTSQA-----G------DEIAIG-KDLADAAKRAGTIQ-HYIYSSMPDHSLYGP-------------WPAVPMWA 129 (352)
T ss_dssp EEEECCCSTT-----S------CHHHHH-HHHHHHHHHHSCCS-EEEEEECCCGGGTSS-------------CCCCTTTH
T ss_pred EEEEcCCCCC-----c------HHHHHH-HHHHHHHHHcCCcc-EEEEeCCccccccCC-------------CCCccHHH
Confidence 9999997421 1 247766 99999999988 54 999999975 3431 23467999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeH-HHHHHHHHH
Q 013602 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYI-DDIVKGCLA 332 (439)
Q Consensus 254 sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v-~Dva~a~~~ 332 (439)
+|+++|.++++ .|+++++|||+ +||++..... ...+.......+.. .+..+++++..++|+|+ +|+|++++.
T Consensus 130 sK~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~-~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~v~~Dva~ai~~ 202 (352)
T 1xgk_A 130 PKFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLP-YPLFQMELMPDGTF-EWHAPFDPDIPLPWLDAEHDVGPALLQ 202 (352)
T ss_dssp HHHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSS-CSSCBEEECTTSCE-EEEESSCTTSCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCCCEEEEecc-eecCCchhcc-cccccccccCCCce-EEeeccCCCCceeeEecHHHHHHHHHH
Confidence 99999999976 38999999987 6887653211 00000000112221 12223567788999999 899999999
Q ss_pred HHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccccccc
Q 013602 333 ALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK 387 (439)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~ 387 (439)
+++.+... ..+++||+++ +.+|+.|+++.+.+.+|.+.++..+|
T Consensus 203 ~l~~~~~~----------~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp 246 (352)
T 1xgk_A 203 IFKDGPQK----------WNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVP 246 (352)
T ss_dssp HHHHCHHH----------HTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECS
T ss_pred HHhCCchh----------hCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECC
Confidence 99875311 1238999996 67999999999999999876655444
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=213.03 Aligned_cols=226 Identities=15% Similarity=0.115 Sum_probs=168.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|++|||||+||||++++++|+++|++|++++|... ........+. ....++.++.+|++|.++++++++.+
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 78 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSK---EKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVS 78 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999987331 1111111111 12357889999999999999998865
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~---------- 147 (246)
T 3osu_A 79 QFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRS-GAIINLSSVVGAVG---------- 147 (246)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEEcchhhcCC----------
Confidence 789999999985432 234556679999999999999988 44443 39999999665421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|++.+.+++.++.+ .|+++++|+||.|+++.... ....+...+..+.+.. .
T Consensus 148 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--~~~~~~~~~~~~~p~~------------r 211 (246)
T 3osu_A 148 --NPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA--LSDELKEQMLTQIPLA------------R 211 (246)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSC--SCHHHHHHHHTTCTTC------------S
T ss_pred --CCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccc--cCHHHHHHHHhcCCCC------------C
Confidence 135678999999999999999886 48999999999999986532 1223444444443332 2
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+.+.+|+|++++.++...... ..|++|++.+|.
T Consensus 212 ~~~~~dva~~v~~l~s~~~~~----------itG~~i~vdgG~ 244 (246)
T 3osu_A 212 FGQDTDIANTVAFLASDKAKY----------ITGQTIHVNGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHhCccccC----------CCCCEEEeCCCc
Confidence 567899999999988765432 345899998864
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=216.46 Aligned_cols=240 Identities=18% Similarity=0.161 Sum_probs=168.6
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC--------ChhHHHHHHHhh--hcCCeEEEEcccCCHHH
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY--------DPSLKKARQALL--ERSGIFIVEGDINDMAL 165 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~--------~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~ 165 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+.... .........+.. ....+.++.+|++|.++
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 37889999999999999999999999999999999853211 111111111111 23578899999999999
Q ss_pred HHHhhccc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCC
Q 013602 166 LKKLFDVV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGL 232 (439)
Q Consensus 166 ~~~~~~~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~ 232 (439)
++++++.+ ++|+||||||..... .+.++++..+++|+.|+.++++++. +.+...+||++||...+..
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 171 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKA 171 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccC
Confidence 99998865 789999999986532 2344566889999999999888874 3332348999999776431
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceee
Q 013602 233 NTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 233 ~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~ 309 (439)
......|+.+|.+.+.+++.++.+ +|+++++|+||.|++|..........+.............
T Consensus 172 ------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (280)
T 3pgx_A 172 ------------TPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPM- 238 (280)
T ss_dssp ------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHHHHHHHHCGGGGGGSCCB-
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhhhhhhhcCchhhhhhhhc-
Confidence 134578999999999999999988 5899999999999998654211110110000000111111
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..... .+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 239 ---~~~~~-r~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 277 (280)
T 3pgx_A 239 ---PVQPN-GFMTADEVADVVAWLAGDGSGT----------LTGTQIPVDKGA 277 (280)
T ss_dssp ---TTBCS-SCBCHHHHHHHHHHHHSGGGTT----------CSSCEEEESTTG
T ss_pred ---ccCCC-CCCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCc
Confidence 11122 3899999999999998765432 345899998764
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=214.46 Aligned_cols=233 Identities=15% Similarity=0.073 Sum_probs=168.8
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+||||||+ |+||++++++|+++|++|++++|+.. ......+.. ....+.++.+|++|.++++++++.+
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-----LRPEAEKLAEALGGALLFRADVTQDEELDALFAGV 80 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-----GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-----HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHH
Confidence 678999999999 99999999999999999999999542 111111111 1134889999999999999988865
Q ss_pred -----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+... .++||++||...+..
T Consensus 81 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------- 153 (261)
T 2wyu_A 81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKV------- 153 (261)
T ss_dssp HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSB-------
T ss_pred HHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCC-------
Confidence 67999999997542 223455678999999999999999976521 139999999765421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..........+...+....+..
T Consensus 154 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~---------- 218 (261)
T 2wyu_A 154 -----VPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLR---------- 218 (261)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTTS----------
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCCC----------
Confidence 1345689999999999999998885 8999999999999985432111222223232222221
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHH
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSD 368 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~e 368 (439)
.+.+++|+|++++.++...... ..|++|++.++..++..|
T Consensus 219 --~~~~~~dva~~v~~l~s~~~~~----------~tG~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 219 --RNITQEEVGNLGLFLLSPLASG----------ITGEVVYVDAGYHIMGME 258 (261)
T ss_dssp --SCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGBC--
T ss_pred --CCCCHHHHHHHHHHHcChhhcC----------CCCCEEEECCCccccCCC
Confidence 2567999999999998654321 234899998886555333
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=215.73 Aligned_cols=231 Identities=12% Similarity=0.075 Sum_probs=165.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh--cCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE--RSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+... ..++.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDR----LHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVR 80 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHH----HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999994321 1111111111 346889999999999999988754
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ .++||++||...+..
T Consensus 81 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~--------- 150 (263)
T 3ai3_A 81 SSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNASICAVQP--------- 150 (263)
T ss_dssp HHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC---------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhcCC---------
Confidence 679999999975432 2334566889999999988888874 344 349999999887642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCCh---------HHHHHHHHHcCCCCceee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMA---------YFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~---------~~~~~~~~~~g~~~~~~~ 309 (439)
..+...|+.+|.+.+.+++.++.+ +|+++++|+||.|++|....... ...+...+....
T Consensus 151 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 221 (263)
T 3ai3_A 151 ---LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH------ 221 (263)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH------
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC------
Confidence 134578999999999999999887 48999999999999874210000 001111111110
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
.....+.+++|+|++++.++...... ..|++|++.+|..++
T Consensus 222 -----~p~~~~~~~~dvA~~~~~l~s~~~~~----------~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 222 -----APIKRFASPEELANFFVFLCSERATY----------SVGSAYFVDGGMLKT 262 (263)
T ss_dssp -----CTTCSCBCHHHHHHHHHHHTSTTCTT----------CCSCEEEESTTCCCC
T ss_pred -----CCCCCCcCHHHHHHHHHHHcCccccC----------CCCcEEEECCCcccc
Confidence 11234789999999999998754321 234899999886654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=214.40 Aligned_cols=231 Identities=16% Similarity=0.138 Sum_probs=169.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+. ....++.++.+|++|.++++++++.+
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 84 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEG----AEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAAL 84 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHH----HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999994321 11111111 12357899999999999999988865
Q ss_pred ----CccEEEEcccccCcc---ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR---YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~---~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ .++||++||...+.
T Consensus 85 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~----------- 152 (256)
T 3gaf_A 85 DQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAG-GGAILNISSMAGEN----------- 152 (256)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTC-----------
T ss_pred HHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHHHcC-----------
Confidence 789999999985432 2345567899999999999999874 333 34999999987653
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
...+...|+.+|++.+.+++.++.++ |+++++|+||.|.++..... ........+....+. ..
T Consensus 153 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~p~------------~r 218 (256)
T 3gaf_A 153 -TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATV-LTPEIERAMLKHTPL------------GR 218 (256)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHH-CCHHHHHHHHTTCTT------------SS
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhc-cCHHHHHHHHhcCCC------------CC
Confidence 12346789999999999999999885 89999999999987632100 001122222222221 23
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccH
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPV 366 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~ 366 (439)
+.+++|+|++++.++...... ..|+++++.+|...++
T Consensus 219 ~~~~~dva~~~~~L~s~~~~~----------itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 219 LGEAQDIANAALFLCSPAAAW----------ISGQVLTVSGGGVQEL 255 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSCCC-
T ss_pred CCCHHHHHHHHHHHcCCcccC----------ccCCEEEECCCccccC
Confidence 678999999999998755432 3458999999876654
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=210.60 Aligned_cols=229 Identities=15% Similarity=0.054 Sum_probs=168.2
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.+.+|+||||||+|+||++++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.++++++++.+
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTAD----IDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999994321 111111111 1257899999999999999988765
Q ss_pred -----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. +. ++||++||...+.
T Consensus 83 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~--------- 152 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGS-GRVVLTSSITGPI--------- 152 (262)
T ss_dssp HHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSS-CEEEEECCSBTTT---------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEechhhcc---------
Confidence 689999999975432 234456678999999999988887654 43 4999999976421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
....+...|+.+|.+.+.+++.++.+ .|+++++|+||.|+++..... ...+...+....+..
T Consensus 153 --~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~~----------- 217 (262)
T 3pk0_A 153 --TGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLEN--GEEYIASMARSIPAG----------- 217 (262)
T ss_dssp --BCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTT--CHHHHHHHHTTSTTS-----------
T ss_pred --CCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccccc--CHHHHHHHHhcCCCC-----------
Confidence 01134678999999999999999988 489999999999998742211 112333333333221
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
.+..++|+|++++.++...... ..|+++++.+|..+
T Consensus 218 -r~~~p~dva~~v~~L~s~~~~~----------itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 218 -ALGTPEDIGHLAAFLATKEAGY----------ITGQAIAVDGGQVL 253 (262)
T ss_dssp -SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTTC
T ss_pred -CCcCHHHHHHHHHHHhCccccC----------CcCCEEEECCCeec
Confidence 2577899999999998765432 34589999887644
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=205.03 Aligned_cols=203 Identities=16% Similarity=0.069 Sum_probs=154.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|+|+||||+|+||++++++|+++|++|++++|+.+.... ....+++++.+|++|.+++.++++++ |+|
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~--d~v 71 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS---------EGPRPAHVVVGDVLQAADVDKTVAGQ--DAV 71 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS---------SSCCCSEEEESCTTSHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccc---------ccCCceEEEEecCCCHHHHHHHHcCC--CEE
Confidence 4799999999999999999999999999999995432111 11457999999999999999999987 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
||+||.... .++ .++|+.++.++++++++.+.. +||++||.++|+..... + .+...|+.+|.++
T Consensus 72 i~~a~~~~~----~~~---~~~n~~~~~~~~~~~~~~~~~-~~v~~Ss~~~~~~~~~~-------~-~~~~~y~~~K~~~ 135 (206)
T 1hdo_A 72 IVLLGTRND----LSP---TTVMSEGARNIVAAMKAHGVD-KVVACTSAFLLWDPTKV-------P-PRLQAVTDDHIRM 135 (206)
T ss_dssp EECCCCTTC----CSC---CCHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCTTCS-------C-GGGHHHHHHHHHH
T ss_pred EECccCCCC----CCc---cchHHHHHHHHHHHHHHhCCC-eEEEEeeeeeccCcccc-------c-ccchhHHHHHHHH
Confidence 999997432 122 248999999999999998854 99999999998753321 1 1467899999999
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
|.++++ .+++++++||+.+ +++...... ...+. +.+. .+|++++|+|++++.+++.+.
T Consensus 136 e~~~~~----~~i~~~~lrp~~~-~~~~~~~~~-------------~~~~~--~~~~--~~~i~~~Dva~~~~~~~~~~~ 193 (206)
T 1hdo_A 136 HKVLRE----SGLKYVAVMPPHI-GDQPLTGAY-------------TVTLD--GRGP--SRVISKHDLGHFMLRCLTTDE 193 (206)
T ss_dssp HHHHHH----TCSEEEEECCSEE-ECCCCCSCC-------------EEESS--SCSS--CSEEEHHHHHHHHHHTTSCST
T ss_pred HHHHHh----CCCCEEEEeCCcc-cCCCCCcce-------------Eeccc--CCCC--CCccCHHHHHHHHHHHhcCcc
Confidence 999854 5999999999998 333211110 00110 1111 479999999999999998754
Q ss_pred hccCCCCCccCCCCCcEEEecCCC
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
. .+++|+++++.
T Consensus 194 ~------------~g~~~~i~~g~ 205 (206)
T 1hdo_A 194 Y------------DGHSTYPSHQY 205 (206)
T ss_dssp T------------TTCEEEEECCC
T ss_pred c------------cccceeeeccc
Confidence 2 23899998864
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=213.80 Aligned_cols=239 Identities=12% Similarity=0.105 Sum_probs=164.8
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhcc
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
..+.+|+||||||+||||++++++|+++|++|++++|+.. ........+.. ....+.++.+|++|.++++++++.
T Consensus 21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 97 (281)
T 3v2h_A 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAP---DEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAM 97 (281)
T ss_dssp -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCH---HHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCh---HHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHH
Confidence 3477899999999999999999999999999999998331 11111111111 135789999999999999998886
Q ss_pred c-----CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
+ ++|+||||||...... +.++++..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 98 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~------- 169 (281)
T 3v2h_A 98 VADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGW-GRIINIASAHGLVA------- 169 (281)
T ss_dssp HHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC-------
T ss_pred HHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECCcccccC-------
Confidence 5 6899999999854322 34456689999999999999887 34443 39999999776421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCC-ceeecCCCCc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSI-PIFESPDHGT 315 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 315 (439)
......|+.+|++.+.+++.++.++ |+++++|+||.|+++..................... ..+ ....
T Consensus 170 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 241 (281)
T 3v2h_A 170 -----SPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVM---LKGQ 241 (281)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-------------------------------CC
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHH---HhcC
Confidence 1345789999999999999999885 899999999999987533110000000000000000 011 1233
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
....+++++|+|.+++.++...... ..|+++++.+|.
T Consensus 242 p~~r~~~~edvA~~v~~L~s~~a~~----------itG~~i~vdGG~ 278 (281)
T 3v2h_A 242 PTKKFITVEQVASLALYLAGDDAAQ----------ITGTHVSMDGGW 278 (281)
T ss_dssp TTCSCBCHHHHHHHHHHHHSSGGGG----------CCSCEEEESTTG
T ss_pred CCCCccCHHHHHHHHHHHcCCCcCC----------CCCcEEEECCCc
Confidence 4456899999999999998765432 345899998764
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=218.24 Aligned_cols=237 Identities=19% Similarity=0.265 Sum_probs=171.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC-CCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN-DYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
+|+|+||||||+||++++++|+++|++|++++|+. ....+.........+...+++++.+|++|.+++.++++++ |+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~--d~ 79 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQV--DI 79 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCC--CE
Confidence 57899999999999999999999999999999965 2111101111112223468999999999999999999987 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC-CChHHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP-ASLYAATKK 256 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p-~~~Y~~sK~ 256 (439)
|||+|+... +.++.++++++++++..++||+ | +||... .+.... .| ...| .+|.
T Consensus 80 vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~sK~ 134 (307)
T 2gas_A 80 VICAAGRLL---------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLDV----DRHDAV-EPVRQVF-EEKA 134 (307)
T ss_dssp EEECSSSSC---------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSCT----TSCCCC-TTHHHHH-HHHH
T ss_pred EEECCcccc---------------cccHHHHHHHHHhcCCceEEee-c---ccccCc----ccccCC-CcchhHH-HHHH
Confidence 999998632 3457899999999882338873 3 344221 122222 23 3578 9999
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHH---HHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHH
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRD---ILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAA 333 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 333 (439)
++|.++++ .|++++++|||.++++... .+... ...++.+..+ ++++..++|++++|+|++++.+
T Consensus 135 ~~e~~~~~----~~i~~~~lrp~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~~~ 201 (307)
T 2gas_A 135 SIRRVIEA----EGVPYTYLCCHAFTGYFLR------NLAQLDATDPPRDKVVIL---GDGNVKGAYVTEADVGTFTIRA 201 (307)
T ss_dssp HHHHHHHH----HTCCBEEEECCEETTTTGG------GTTCTTCSSCCSSEEEEE---TTSCSEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHH----cCCCeEEEEcceeeccccc------cccccccccCCCCeEEEe---cCCCcceEEeeHHHHHHHHHHH
Confidence 99998865 4999999999999886321 01000 1122333333 5677889999999999999999
Q ss_pred HhhchhccCCCCCccCCCCCcEEEecC-CCcccHHHHHHHHHHHhCCcccccccc
Q 013602 334 LDTAEKSTGSGGKKRGRAQLRVFNLGN-TSPVPVSDLVSILERLLKVKAKRNIMK 387 (439)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~t~~el~~~l~~~~g~~~~~~~~~ 387 (439)
+..+.. .++.|++.+ ++.+|+.|+++.+.+.+|.+.++...+
T Consensus 202 l~~~~~------------~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (307)
T 2gas_A 202 ANDPNT------------LNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVS 244 (307)
T ss_dssp HTCGGG------------TTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEEC
T ss_pred HcCccc------------cCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecC
Confidence 986542 127788876 478999999999999999887665444
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=217.59 Aligned_cols=254 Identities=13% Similarity=0.091 Sum_probs=173.9
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCC-------hh-HHHHHHHh-hhcCCeEEEEcccCCHHHH
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD-------PS-LKKARQAL-LERSGIFIVEGDINDMALL 166 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~-------~~-~~~~~~~~-~~~~~v~~~~~Dl~d~~~~ 166 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+..... .. ......+. ....++.++.+|++|.+++
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 467899999999999999999999999999999998633211 11 11111111 1235789999999999999
Q ss_pred HHhhccc-----CccEEEEcccccCcc--ccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCC
Q 013602 167 KKLFDVV-----SFTHVMHLAAQAGVR--YAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 167 ~~~~~~~-----~~d~Vi~~Ag~~~~~--~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~ 238 (439)
+++++.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++..... ..+||++||...+......+.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~ 166 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPPG 166 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccccc
Confidence 9988865 689999999985433 34456678999999999999999987531 239999999766543222222
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCcee-----ec
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIF-----ES 310 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~-----~~ 310 (439)
.+.... .+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... .............. ..
T Consensus 167 ~~~~~~-~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 241 (287)
T 3pxx_A 167 AGGPQG-PGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAP----MYRQFRPDLEAPSRADALLAF 241 (287)
T ss_dssp ----CH-HHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHH----HHHHHCTTSSSCCHHHHHHHG
T ss_pred ccccCC-CccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccc----hhhhhccccccchhHHHHhhh
Confidence 222211 235689999999999999999986 899999999999988543211 00111100000000 00
Q ss_pred CCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 311 PDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 311 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+........+.+++|+|.+++.++...... ..|+++++.+|..+
T Consensus 242 ~~~~~~~~~~~~p~dva~~v~fL~s~~a~~----------itG~~i~vdGG~~~ 285 (287)
T 3pxx_A 242 PAMQAMPTPYVEASDISNAVCFLASDESRY----------VTGLQFKVDAGAML 285 (287)
T ss_dssp GGGCSSSCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred hhhcccCCCCCCHHHHHhhHheecchhhcC----------CCCceEeECchhhh
Confidence 000111156889999999999998755432 34589999887654
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-26 Score=211.82 Aligned_cols=226 Identities=15% Similarity=0.134 Sum_probs=161.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|++|||||+|+||++++++|+++|++|++++|+.+........ . ...+.++.+|++|.++++++++.+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-----~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE-----L-GAAVRFRNADVTNEADATAALAFAKQE 78 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------------CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH-----h-CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999976543322111 1 346889999999999999998865
Q ss_pred --CccEEEEcccccCcc--------ccccChhHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCCcccCCCC
Q 013602 174 --SFTHVMHLAAQAGVR--------YAMQNPNSYVHSNIAGLVSLLEVCKNA---------NPQPAIVWASSSSVYGLNT 234 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~--------~~~~~~~~~~~~Nv~gt~~ll~~~~~~---------~~~~~~V~~SS~~v~g~~~ 234 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. +...+||++||...+..
T Consensus 79 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~-- 156 (257)
T 3tpc_A 79 FGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDG-- 156 (257)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC--
T ss_pred cCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccC--
Confidence 689999999975431 223556789999999999999988653 12338999999776531
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecC
Q 013602 235 KVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 235 ~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
..+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++..... .......+.... +.
T Consensus 157 ----------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~--p~---- 218 (257)
T 3tpc_A 157 ----------QIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGM--PQDVQDALAASV--PF---- 218 (257)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC----------------CCS--SS----
T ss_pred ----------CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccC--CHHHHHHHHhcC--CC----
Confidence 134678999999999999999888 589999999999998753210 001111111111 11
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
...+.+++|+|.+++.++.. .. ..|+++++.+|..++
T Consensus 219 -----~~r~~~~~dva~~v~~l~s~-~~-----------itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 219 -----PPRLGRAEEYAALVKHICEN-TM-----------LNGEVIRLDGALRMA 255 (257)
T ss_dssp -----SCSCBCHHHHHHHHHHHHHC-TT-----------CCSCEEEESTTCCC-
T ss_pred -----CCCCCCHHHHHHHHHHHccc-CC-----------cCCcEEEECCCccCC
Confidence 03478899999999999875 22 344899998876554
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=207.60 Aligned_cols=230 Identities=10% Similarity=0.085 Sum_probs=166.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+|+||.+++++|+++|++|++++|+.+ ......... ...++.++.+|++|.++++++++.+
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKE-----KLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQID 78 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999332 111111111 1247889999999999999998865
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+...+||++||...+..
T Consensus 79 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 149 (257)
T 3imf_A 79 EKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDA--------- 149 (257)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSC---------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccC---------
Confidence 789999999974332 2345567899999999999998873 2232349999999776531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH----hCCcEEEEeeccccCCCCCCCChH-HHHHHHHHcCCCCceeecCCCCcc
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI----YGLSLTGLRFFTVYGPWGRPDMAY-FFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~----~gi~~~ilrpg~v~G~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
..+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++........ ..+...+.... .
T Consensus 150 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------p 214 (257)
T 3imf_A 150 ---GPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSV------------P 214 (257)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTS------------T
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcC------------C
Confidence 134678999999999999998865 389999999999998854321100 00111111111 1
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
...+..++|+|.+++.++...... ..|+++++.+|..++
T Consensus 215 ~~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 215 LGRLGTPEEIAGLAYYLCSDEAAY----------INGTCMTMDGGQHLH 253 (257)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTTSC
T ss_pred CCCCcCHHHHHHHHHHHcCchhcC----------ccCCEEEECCCcccC
Confidence 224788999999999998765432 345899998886544
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=208.49 Aligned_cols=225 Identities=14% Similarity=0.125 Sum_probs=162.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+|+||||||+|+||++++++|+++|++|++++|+.+ .......+. ....++.++.+|++|.++++++++..
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAE----TLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQ 77 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999331 111111111 11346899999999999999998754
Q ss_pred --CccEEEEcccccCccc-------cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY-------AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~-------~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||...... +.++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 78 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~~-------- 148 (250)
T 2cfc_A 78 FGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGA-GVIVNIASVASLVA-------- 148 (250)
T ss_dssp HSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC--------
T ss_pred hCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CEEEEECChhhccC--------
Confidence 6799999999754321 234566889999999877766653 4453 49999999876532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|.+.+.+++.++.++ |+++++||||.|+++..........+...+..+.+.
T Consensus 149 ----~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------ 212 (250)
T 2cfc_A 149 ----FPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQ------------ 212 (250)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCTT------------
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCCC------------
Confidence 1346789999999999999998875 899999999999998643100011222323332221
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+.+++|+|++++.++..+... ..|+++++.+|.
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~ 247 (250)
T 2cfc_A 213 KEIGTAAQVADAVMFLAGEDATY----------VNGAALVMDGAY 247 (250)
T ss_dssp CSCBCHHHHHHHHHHHHSTTCTT----------CCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHcCchhhc----------ccCCEEEECCce
Confidence 23678999999999998754321 234899998764
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=211.91 Aligned_cols=231 Identities=15% Similarity=0.058 Sum_probs=161.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh---------cCCeEEEEcccCCHHHHH
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE---------RSGIFIVEGDINDMALLK 167 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~v~~~~~Dl~d~~~~~ 167 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ ......+... ..++.++.+|++|.++++
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 79 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRA-----AAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAAR 79 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHTC------------CCEEEECCTTSHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChH-----HHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHH
Confidence 67899999999999999999999999999999999332 1111111111 146889999999999999
Q ss_pred Hhhccc-----Cc-cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCC
Q 013602 168 KLFDVV-----SF-THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLN 233 (439)
Q Consensus 168 ~~~~~~-----~~-d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~ 233 (439)
++++.+ ++ |+||||||..... .+.++++..+++|+.|+.++++++.+. +..++||++||...+..
T Consensus 80 ~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~- 158 (264)
T 2pd6_A 80 CLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVG- 158 (264)
T ss_dssp HHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHC-
T ss_pred HHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccC-
Confidence 998876 44 9999999975432 234556789999999999999987653 31239999999754321
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeec
Q 013602 234 TKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFES 310 (439)
Q Consensus 234 ~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~ 310 (439)
..+...|+.+|.+.+.+++.++.+ .|+++++||||.|+++.... ....+...+..+
T Consensus 159 -----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~-------- 217 (264)
T 2pd6_A 159 -----------NVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK--VPQKVVDKITEM-------- 217 (264)
T ss_dssp -----------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC------------CTGGG--------
T ss_pred -----------CCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhh--cCHHHHHHHHHh--------
Confidence 134678999999999999999887 58999999999999986431 000111111111
Q ss_pred CCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHH
Q 013602 311 PDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSD 368 (439)
Q Consensus 311 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~e 368 (439)
.....+.+++|+|++++.++...... ..|+.+++.++..++...
T Consensus 218 ----~~~~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~~~~~~~ 261 (264)
T 2pd6_A 218 ----IPMGHLGDPEDVADVVAFLASEDSGY----------ITGTSVEVTGGLFMAENL 261 (264)
T ss_dssp ----CTTCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC------
T ss_pred ----CCCCCCCCHHHHHHHHHHHcCCcccC----------CCCCEEEECCCceecccc
Confidence 11124788999999999998754321 234899999887665543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=213.05 Aligned_cols=225 Identities=17% Similarity=0.169 Sum_probs=139.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+. .....+.++.+|++|.++++++++.+
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEA----AEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLA 82 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999993321 11111111 12357889999999999999998865
Q ss_pred ---CccEEEEcccccCc-------cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-------RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-------~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++ ++.+. ++||++||...|
T Consensus 83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~--------- 152 (253)
T 3qiv_A 83 EFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGG-GAIVNQSSTAAW--------- 152 (253)
T ss_dssp HHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECC-------------
T ss_pred HcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CEEEEECCcccc---------
Confidence 78999999997421 1233455689999999966666554 44443 399999998865
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.+...|+.+|++.+.+++.++.++ |+++++|+||.|+++...... ...+...+.++. .
T Consensus 153 ------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~~------------~ 213 (253)
T 3qiv_A 153 ------LYSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTT-PKEMVDDIVKGL------------P 213 (253)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC--------------------------------------
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcC-cHHHHHHHhccC------------C
Confidence 234679999999999999999986 799999999999988543111 111112222221 2
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
...+..++|+|++++.++...... ..|++|++.+|..+
T Consensus 214 ~~~~~~~~dva~~~~~l~s~~~~~----------~tG~~~~vdgG~~~ 251 (253)
T 3qiv_A 214 LSRMGTPDDLVGMCLFLLSDEASW----------ITGQIFNVDGGQII 251 (253)
T ss_dssp ------CCHHHHHHHHHHSGGGTT----------CCSCEEEC------
T ss_pred CCCCCCHHHHHHHHHHHcCccccC----------CCCCEEEECCCeec
Confidence 233567899999999998765432 24589999887654
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=212.43 Aligned_cols=231 Identities=14% Similarity=0.080 Sum_probs=167.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.++++++++.+
T Consensus 17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 92 (266)
T 4egf_A 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSE----LDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRA 92 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4688999999999999999999999999999999994321 111111111 2457999999999999999888765
Q ss_pred -----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+...+||++||...+..
T Consensus 93 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 164 (266)
T 4egf_A 93 AEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAP-------- 164 (266)
T ss_dssp HHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC--------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccC--------
Confidence 689999999985432 23445668899999999988888743 332339999999876531
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++..............+....+.
T Consensus 165 ----~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 228 (266)
T 4egf_A 165 ----LPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPL------------ 228 (266)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTCTT------------
T ss_pred ----CCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcCCC------------
Confidence 1346789999999999999999884 899999999999876321000001122222333222
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
..+..++|+|++++.++...... ..|+++++.+|..+
T Consensus 229 ~r~~~p~dva~~v~~L~s~~~~~----------itG~~i~vdGG~~~ 265 (266)
T 4egf_A 229 GRFAVPHEVSDAVVWLASDAASM----------INGVDIPVDGGYTM 265 (266)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred CCCcCHHHHHHHHHHHhCchhcC----------ccCcEEEECCCccC
Confidence 23577999999999998765432 34589999887543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-26 Score=213.55 Aligned_cols=229 Identities=15% Similarity=0.094 Sum_probs=166.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.+++|+||||||+|+||++++++|+++|++|++++|.. .......+. .....+.++.+|++|.++++++.+..
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (273)
T 3uf0_A 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD-----GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELA 102 (273)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-----HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH-----HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999732 112211221 12346889999999999988885533
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... +.++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 103 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~IV~isS~~~~~~---------- 171 (273)
T 3uf0_A 103 ATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGS-GRIVTIASMLSFQG---------- 171 (273)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC----------
T ss_pred hcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcchHhcCC----------
Confidence 6899999999864322 344567899999999999988773 3443 39999999776531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|.+.+.+++.++.+ .|+++++|+||.|+++..............+..+.+. ..
T Consensus 172 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------~r 237 (273)
T 3uf0_A 172 --GRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARIPA------------GR 237 (273)
T ss_dssp --CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHSTT------------SS
T ss_pred --CCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCCC------------CC
Confidence 134678999999999999999988 4899999999999987432100001122222222221 23
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+..++|+|.+++.++...... ..|+++++.+|..+
T Consensus 238 ~~~pedva~~v~~L~s~~a~~----------itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 238 WATPEDMVGPAVFLASDAASY----------VHGQVLAVDGGWLA 272 (273)
T ss_dssp CBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred CCCHHHHHHHHHHHhCchhcC----------CcCCEEEECcCccC
Confidence 677899999999998765432 34589999887644
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=220.99 Aligned_cols=235 Identities=15% Similarity=0.162 Sum_probs=172.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC-CCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN-DYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
+|+|+||||||+||++++++|+++|++|++++|+. +...+... .........+++++.+|++|.+++.++++++ |+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~-~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~--d~ 80 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSV-QLREEFRSMGVTIIEGEMEEHEKMVSVLKQV--DI 80 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHH-HHHHHHHHTTCEEEECCTTCHHHHHHHHTTC--SE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHH-HHHHHhhcCCcEEEEecCCCHHHHHHHHcCC--CE
Confidence 57899999999999999999999999999999965 22111111 1111223468999999999999999999987 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCC-CChHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTDQP-ASLYAATK 255 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p-~~~Y~~sK 255 (439)
|||+|+... +.++.+++++|++.+ .. +||+ | +||... .|.... .| ...| .+|
T Consensus 81 vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~sK 134 (321)
T 3c1o_A 81 VISALPFPM---------------ISSQIHIINAIKAAGNIK-RFLP-S---DFGCEE----DRIKPL-PPFESVL-EKK 134 (321)
T ss_dssp EEECCCGGG---------------SGGGHHHHHHHHHHCCCC-EEEC-S---CCSSCG----GGCCCC-HHHHHHH-HHH
T ss_pred EEECCCccc---------------hhhHHHHHHHHHHhCCcc-EEec-c---ccccCc----cccccC-CCcchHH-HHH
Confidence 999998632 445789999999988 54 8872 3 344321 111211 22 3579 999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHH---HHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHH
Q 013602 256 KAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTR---DILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLA 332 (439)
Q Consensus 256 ~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 332 (439)
.++|.++++ .++++++|||+.++++. ...+.. ....++.+..+ ++++..++|++++|+|++++.
T Consensus 135 ~~~e~~~~~----~~~~~~~lrp~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~~ 201 (321)
T 3c1o_A 135 RIIRRAIEA----AALPYTYVSANCFGAYF------VNYLLHPSPHPNRNDDIVIY---GTGETKFVLNYEEDIAKYTIK 201 (321)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEEHHHH------HHHHHCCCSSCCTTSCEEEE---TTSCCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCeEEEEeceecccc------ccccccccccccccCceEEe---cCCCcceeEeeHHHHHHHHHH
Confidence 999998864 48999999999988751 111111 01223344444 567889999999999999999
Q ss_pred HHhhchhccCCCCCccCCCCCcEEEecC-CCcccHHHHHHHHHHHhCCcccccccc
Q 013602 333 ALDTAEKSTGSGGKKRGRAQLRVFNLGN-TSPVPVSDLVSILERLLKVKAKRNIMK 387 (439)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~t~~el~~~l~~~~g~~~~~~~~~ 387 (439)
++..+.. .+++|++.+ ++.+|+.|+++.+.+.+|.+..+...+
T Consensus 202 ~l~~~~~------------~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~ 245 (321)
T 3c1o_A 202 VACDPRC------------CNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP 245 (321)
T ss_dssp HHHCGGG------------TTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEEC
T ss_pred HHhCccc------------cCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCC
Confidence 9987542 137888876 578999999999999999887665544
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=205.93 Aligned_cols=225 Identities=12% Similarity=0.053 Sum_probs=160.4
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-C
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-S 174 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~ 174 (439)
...+|+||||||+|+||++++++|+++|++|++++|+.+ ......+ .....+.++.+|++|.+++.++++.. +
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 84 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEE-----KLKSLGN-ALKDNYTIEVCNLANKEECSNLISKTSN 84 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHH-HHCSSEEEEECCTTSHHHHHHHHHTCSC
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHH-----HHHHHHH-HhccCccEEEcCCCCHHHHHHHHHhcCC
Confidence 367899999999999999999999999999999999321 1111111 12357899999999999999999876 6
Q ss_pred ccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 013602 175 FTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~ 246 (439)
+|+||||||.... ..+.++++..+++|+.|+.++++++. +.+ .++||++||...+.. ..
T Consensus 85 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~------------~~ 151 (249)
T 3f9i_A 85 LDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKR-YGRIINISSIVGIAG------------NP 151 (249)
T ss_dssp CSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCC--C------------CS
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEEccHHhccC------------CC
Confidence 8999999997543 23456778999999999998888764 333 239999999776531 13
Q ss_pred CCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeH
Q 013602 247 PASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYI 323 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v 323 (439)
+...|+.+|++.+.+++.++.++ |+++++|+||.|.++...... ......+..+.+ ...+.++
T Consensus 152 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~~------------~~~~~~~ 217 (249)
T 3f9i_A 152 GQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLN--EKQREAIVQKIP------------LGTYGIP 217 (249)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CC--HHHHHHHHHHCT------------TCSCBCH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccC--HHHHHHHHhcCC------------CCCCcCH
Confidence 46789999999999999998874 899999999999987543211 122222222221 2247889
Q ss_pred HHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 324 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+|+|++++.++...... ..|++|++.+|..
T Consensus 218 ~dva~~~~~l~s~~~~~----------~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 218 EDVAYAVAFLASNNASY----------ITGQTLHVNGGML 247 (249)
T ss_dssp HHHHHHHHHHHSGGGTT----------CCSCEEEESTTSS
T ss_pred HHHHHHHHHHcCCccCC----------ccCcEEEECCCEe
Confidence 99999999998766532 3458999988753
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=210.29 Aligned_cols=228 Identities=12% Similarity=0.050 Sum_probs=166.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEE-ECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGL-DNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+||||||+|+||++++++|+++|++|+++ +|+. .......+.. ...++.++.+|++|.++++++++.+
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSK-----KAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQI 76 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCH-----HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCH-----HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 357899999999999999999999999999997 6622 1111111111 2347899999999999999998876
Q ss_pred -----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ ..+||++||...+.
T Consensus 77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~--------- 146 (258)
T 3oid_A 77 DETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNG-GGHIVSISSLGSIR--------- 146 (258)
T ss_dssp HHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEEEEGGGTS---------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhCC---------
Confidence 789999999974432 2344556789999999999988874 333 34999999977653
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
...+...|+.+|++.+.+++.++.++ |+++++|+||.|.++..........+...+....+.
T Consensus 147 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 211 (258)
T 3oid_A 147 ---YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPA------------ 211 (258)
T ss_dssp ---BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCTT------------
T ss_pred ---CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCCC------------
Confidence 12356799999999999999999885 899999999999887433211112223323322222
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
..+.+++|+|++++.++...... ..|+++++.+|...
T Consensus 212 ~r~~~~~dva~~v~~L~s~~~~~----------itG~~i~vdGG~~~ 248 (258)
T 3oid_A 212 GRMVEIKDMVDTVEFLVSSKADM----------IRGQTIIVDGGRSL 248 (258)
T ss_dssp SSCBCHHHHHHHHHHHTSSTTTT----------CCSCEEEESTTGGG
T ss_pred CCCcCHHHHHHHHHHHhCcccCC----------ccCCEEEECCCccC
Confidence 23678999999999998765432 34589999887543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=221.22 Aligned_cols=240 Identities=20% Similarity=0.230 Sum_probs=172.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|+|+||||||+||++++++|+++|++|++++|+...............+...+++++.+|++|.+++.++++++ |+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~--d~v 81 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV--DVV 81 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC--SEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCC--CEE
Confidence 578999999999999999999999999999999654321111111112234568999999999999999999987 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC-CChHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP-ASLYAATKKA 257 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p-~~~Y~~sK~a 257 (439)
||+|+... +.++.+++++|++++..++||+ |+ ||... .|.... .| ...| .+|.+
T Consensus 82 i~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~----~~~~~~-~p~~~~y-~sK~~ 136 (308)
T 1qyc_A 82 ISTVGSLQ---------------IESQVNIIKAIKEVGTVKRFFP-SE---FGNDV----DNVHAV-EPAKSVF-EVKAK 136 (308)
T ss_dssp EECCCGGG---------------SGGGHHHHHHHHHHCCCSEEEC-SC---CSSCT----TSCCCC-TTHHHHH-HHHHH
T ss_pred EECCcchh---------------hhhHHHHHHHHHhcCCCceEee-cc---cccCc----cccccC-CcchhHH-HHHHH
Confidence 99998632 3457899999999983348874 43 44211 122222 23 3568 99999
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
+|.++++ .|++++++||+.++|+....... .......++.+..+ ++++..++|++++|+|++++.++..+
T Consensus 137 ~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~~~l~~~ 206 (308)
T 1qyc_A 137 VRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQ---AGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTIKAVDDP 206 (308)
T ss_dssp HHHHHHH----HTCCBEEEECCEEHHHHTTTTTC---TTCSSCCSSEEEEE---TTSCCEEEEECHHHHHHHHHTTSSCG
T ss_pred HHHHHHh----cCCCeEEEEeceecccccccccc---ccccCCCCCceEEe---cCCCceEEEecHHHHHHHHHHHHhCc
Confidence 9998875 48999999999998753210000 00001123333333 57788999999999999999998765
Q ss_pred hhccCCCCCccCCCCCcEEEecC-CCcccHHHHHHHHHHHhCCcccccccc
Q 013602 338 EKSTGSGGKKRGRAQLRVFNLGN-TSPVPVSDLVSILERLLKVKAKRNIMK 387 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~t~~el~~~l~~~~g~~~~~~~~~ 387 (439)
.. .+++|++.+ ++.+|+.|+++.+.+.+|.+.++...+
T Consensus 207 ~~------------~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 245 (308)
T 1qyc_A 207 RT------------LNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 245 (308)
T ss_dssp GG------------TTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred cc------------cCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCC
Confidence 42 127888876 478999999999999999887665544
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=213.69 Aligned_cols=229 Identities=14% Similarity=0.044 Sum_probs=169.7
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh--cCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE--RSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.+++|+||||||+||||++++++|+++|++|++++|+.+.. .....+... ...+.++.+|++|.++++++++.+
T Consensus 38 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 113 (293)
T 3rih_A 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPREL----SSVTAELGELGAGNVIGVRLDVSDPGSCADAARTV 113 (293)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGG----HHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHH
Confidence 36789999999999999999999999999999999955321 111122111 247899999999999999988765
Q ss_pred -----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 114 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iV~isS~~~~~~-------- 184 (293)
T 3rih_A 114 VDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGR-GRVILTSSITGPVT-------- 184 (293)
T ss_dssp HHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSS-CEEEEECCSBTTTB--------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEeChhhccC--------
Confidence 789999999985432 234556789999999999999987 34443 49999999764210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
...+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..... ...+...+....+...
T Consensus 185 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~~r---------- 249 (293)
T 3rih_A 185 ---GYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDM--GEEYISGMARSIPMGM---------- 249 (293)
T ss_dssp ---BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHT--CHHHHHHHHTTSTTSS----------
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhc--cHHHHHHHHhcCCCCC----------
Confidence 11346789999999999999998884 89999999999998742211 1123333444433322
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+...+|+|.+++.++...... ..|+++++.+|..+
T Consensus 250 --~~~p~dvA~~v~fL~s~~a~~----------itG~~i~vdGG~~~ 284 (293)
T 3rih_A 250 --LGSPVDIGHLAAFLATDEAGY----------ITGQAIVVDGGQVL 284 (293)
T ss_dssp --CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTTC
T ss_pred --CCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCccC
Confidence 456899999999998765432 34589999887654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=210.35 Aligned_cols=231 Identities=12% Similarity=0.073 Sum_probs=168.0
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+ |+||++++++|+++|++|++++|+. .......... . ......++.+|++|.++++++++.+
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~-~--~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFA-A--QLGSDIVLQCDVAEDASIDTMFAELG 82 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHH-H--HTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHH-H--hcCCcEEEEccCCCHHHHHHHHHHHH
Confidence 567999999999 9999999999999999999999965 2111111111 1 1134578999999999999888754
Q ss_pred ----CccEEEEcccccCc--------c-ccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV--------R-YAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~--------~-~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||.... . .+.++++..+++|+.|+.++++++.+... .++||++||...+..
T Consensus 83 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------- 155 (265)
T 1qsg_A 83 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA------- 155 (265)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB-------
T ss_pred HHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccC-------
Confidence 68999999997542 1 33455678999999999999999976521 139999999766421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|+++..........+...+..+.+..
T Consensus 156 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~---------- 220 (265)
T 1qsg_A 156 -----IPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIR---------- 220 (265)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTS----------
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCCC----------
Confidence 1345789999999999999998885 8999999999999985432111222223232222211
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
.+.+++|+|++++.++...... ..|++|++.++..++
T Consensus 221 --~~~~~~dva~~v~~l~s~~~~~----------~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 221 --RTVTIEDVGNSAAFLCSDLSAG----------ISGEVVHVDGGFSIA 257 (265)
T ss_dssp --SCCCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTGGGB
T ss_pred --CCCCHHHHHHHHHHHhCchhcC----------ccCCEEEECCCcCCC
Confidence 2578999999999998754421 234899998876543
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=212.30 Aligned_cols=238 Identities=12% Similarity=0.033 Sum_probs=172.4
Q ss_pred cCCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
..++|+||||||+ |+||++++++|+++|++|++++|+.. ..............+.++.+|++|.++++++++.+
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDR----FKDRITEFAAEFGSELVFPCDVADDAQIDALFASL 86 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchh----hHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHH
Confidence 3678999999999 99999999999999999999999522 11111111112346889999999999999998865
Q ss_pred -----CccEEEEcccccCcc---------ccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR---------YAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~---------~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~ 238 (439)
++|+||||||..... .+.+++...+++|+.++.++++++..... ..+||++||...+..
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~------ 160 (271)
T 3ek2_A 87 KTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERA------ 160 (271)
T ss_dssp HHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSB------
T ss_pred HHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccC------
Confidence 789999999985431 33445678999999999999999876421 238999999776431
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++..........+...+....+..
T Consensus 161 ------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~--------- 225 (271)
T 3ek2_A 161 ------IPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLK--------- 225 (271)
T ss_dssp ------CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHSTTS---------
T ss_pred ------CCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcCCcC---------
Confidence 2356799999999999999999875 8999999999999875443222223333333333222
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHH
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVS 371 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~ 371 (439)
.+..++|+|++++.++...... ..|+++++.+|..+++.++.+
T Consensus 226 ---~~~~pedva~~i~~l~s~~~~~----------~tG~~i~vdgG~~~~~~~~~~ 268 (271)
T 3ek2_A 226 ---RNVTIEQVGNAGAFLLSDLASG----------VTAEVMHVDSGFNAVVGGMAG 268 (271)
T ss_dssp ---SCCCHHHHHHHHHHHHSGGGTT----------CCSEEEEESTTGGGBCCCC--
T ss_pred ---CCCCHHHHHHHHHHHcCcccCC----------eeeeEEEECCCeeeehhhhhh
Confidence 2567899999999998765432 345999999988777666543
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-25 Score=209.73 Aligned_cols=232 Identities=16% Similarity=0.050 Sum_probs=165.8
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-C
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-S 174 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~ 174 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+.+ ......+. -..++.++.+|++|.++++++++.+ +
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~-----~~~~~~~~-~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 86 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTR-----KGEAAART-MAGQVEVRELDLQDLSSVRRFADGVSG 86 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHTT-SSSEEEEEECCTTCHHHHHHHHHTCCC
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHH-----HHHHHHHH-hcCCeeEEEcCCCCHHHHHHHHHhcCC
Confidence 478899999999999999999999999999999999321 11111111 1357899999999999999999987 7
Q ss_pred ccEEEEcccccCcc--ccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCC-CCCCCCCCCCCCCCCChH
Q 013602 175 FTHVMHLAAQAGVR--YAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLN-TKVPFSEKDRTDQPASLY 251 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~--~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~-~~~~~~e~~~~~~p~~~Y 251 (439)
+|+||||||+.... .+.++++..+++|+.|+.++++++.+.... +||++||...+... ...+..++..+..+...|
T Consensus 87 iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~Y 165 (291)
T 3rd5_A 87 ADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAY 165 (291)
T ss_dssp EEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECCGGGTTCCCCSSCTTCSSSCCCHHHHH
T ss_pred CCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeechhhccCCCCcccccccccCCCCcchH
Confidence 89999999986432 346778899999999999999999887754 99999997766432 222222222222455789
Q ss_pred HHHHHHHHHHHHHHHhHh---C--CcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHH
Q 013602 252 AATKKAGEEIAHTYNHIY---G--LSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDI 326 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~---g--i~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dv 326 (439)
+.||++.+.+++.+++++ | +++++|+||.|.++...... ..+.. .+... ...+-...++|+
T Consensus 166 ~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~--~~~~~-~~~~~-----------~~~~~~~~~~~~ 231 (291)
T 3rd5_A 166 SQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASG--RKLGD-ALMSA-----------ATRVVATDADFG 231 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC----------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccc--hHHHH-HHHHH-----------HHHHHhCCHHHH
Confidence 999999999999998885 5 99999999999887543110 00000 00000 011123458999
Q ss_pred HHHHHHHHhhchhccCCCCCccCCCCCcEEEecC
Q 013602 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN 360 (439)
Q Consensus 327 a~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 360 (439)
|.+++.++..+. ..|+.|++.+
T Consensus 232 A~~~~~l~~~~~------------~~G~~~~vdg 253 (291)
T 3rd5_A 232 ARQTLYAASQDL------------PGDSFVGPRF 253 (291)
T ss_dssp HHHHHHHHHSCC------------CTTCEEEETT
T ss_pred HHHHHHHHcCCC------------CCCceeCCcc
Confidence 999999988742 2337777754
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-26 Score=215.72 Aligned_cols=229 Identities=14% Similarity=0.109 Sum_probs=168.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+... ......+.. ....+.++.+|++|.++++++++.+
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 120 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG----DANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETV 120 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH----HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 678999999999999999999999999999999995421 111111111 2357889999999999999988765
Q ss_pred ----CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+... .++||++||...+..
T Consensus 121 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~----------- 189 (291)
T 3ijr_A 121 RQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEG----------- 189 (291)
T ss_dssp HHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHC-----------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCC-----------
Confidence 689999999975332 13455678999999999999999976531 239999999876532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..... .-......+ . .......+
T Consensus 190 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~~~~~~~~--~----------~~~p~~r~ 255 (291)
T 3ijr_A 190 -NETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSS-FDEKKVSQF--G----------SNVPMQRP 255 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHH-SCHHHHHHT--T----------TTSTTSSC
T ss_pred -CCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCccccc-CCHHHHHHH--H----------ccCCCCCC
Confidence 1345789999999999999999885 89999999999998731100 000111111 1 11222346
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
.+++|+|++++.++...... ..|+++++.+|..+
T Consensus 256 ~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~~~ 289 (291)
T 3ijr_A 256 GQPYELAPAYVYLASSDSSY----------VTGQMIHVNGGVIV 289 (291)
T ss_dssp BCGGGTHHHHHHHHSGGGTT----------CCSCEEEESSSCCC
T ss_pred cCHHHHHHHHHHHhCCccCC----------CcCCEEEECCCccc
Confidence 78999999999998765432 34589999887543
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=206.65 Aligned_cols=226 Identities=17% Similarity=0.107 Sum_probs=155.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ...++.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 71 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ-------------EQYPFATEVMDVADAAQVAQVCQRLLAE 71 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS-------------SCCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh-------------hcCCceEEEcCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999995431 1123888999999999999988754
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 72 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~----------- 139 (250)
T 2fwm_X 72 TERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRG-GAIVTVASDAAHTP----------- 139 (250)
T ss_dssp CSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTSC-----------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCC-CEEEEECchhhCCC-----------
Confidence 679999999975432 234556789999999999998887 44443 49999999876531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHH-HHHcCCCCceeecCCCCcceee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTR-DILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++............. .+..-. ..+ ........
T Consensus 140 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~p~~~ 213 (250)
T 2fwm_X 140 -RIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFG--EQF---KLGIPLGK 213 (250)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------------
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhh--hcc---cccCCCCC
Confidence 1346789999999999999998874 8999999999999885321100000000 000000 000 00111234
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+.+++|+|++++.++...... ..|+.+++.+|..
T Consensus 214 ~~~p~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 214 IARPQEIANTILFLASDLASH----------ITLQDIVVDGGST 247 (250)
T ss_dssp --CHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred CcCHHHHHHHHHHHhCccccC----------CCCCEEEECCCcc
Confidence 788999999999998765422 2348999987753
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=209.93 Aligned_cols=232 Identities=15% Similarity=0.045 Sum_probs=170.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.+++|++|||||+|+||++++++|+++|++|++++|+.+ ......+.. ..++.++.+|++|.++++++++.+
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNES-----NIARIREEF-GPRVHALRSDIADLNEIAVLGAAAGQ 78 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHH-GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHh-CCcceEEEccCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999321 111111111 357899999999999999888765
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||...... +.++++..+++|+.|+.++++++..... ..+||++||...+.. .
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~ 146 (255)
T 4eso_A 79 TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGG------------H 146 (255)
T ss_dssp HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSB------------C
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCC------------C
Confidence 6899999999854322 3455678999999999999999976421 239999999776531 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCCh----HHHHHHHHHcCCCCceeecCCCCccee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMA----YFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.+|....... ...+........+. .
T Consensus 147 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~------------~ 214 (255)
T 4eso_A 147 PGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPM------------K 214 (255)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTT------------S
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCC------------C
Confidence 346789999999999999999885 8999999999999885432111 11122222222221 1
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHH
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSD 368 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~e 368 (439)
.+.+++|+|++++.++..... ..|+++++.+|...++.+
T Consensus 215 r~~~pedvA~~v~~L~s~~~~-----------itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 215 RNGTADEVARAVLFLAFEATF-----------TTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp SCBCHHHHHHHHHHHHHTCTT-----------CCSCEEEESTTTTTTBCC
T ss_pred CCcCHHHHHHHHHHHcCcCcC-----------ccCCEEEECCCccccCcC
Confidence 256789999999998875222 345899999887665443
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-25 Score=209.96 Aligned_cols=227 Identities=14% Similarity=0.069 Sum_probs=165.7
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+||||||+ |+||++++++|+++|++|++++|+.. ......+.. ...++.++.+|++|.++++++++.+
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 93 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-----LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFL 93 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-----GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH
Confidence 678999999999 99999999999999999999999542 111111111 1134789999999999999988765
Q ss_pred -----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecCCcccCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNANP--QPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~--~~~~V~~SS~~v~g~~~~~~~ 238 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+... .++||++||...+..
T Consensus 94 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~------ 167 (285)
T 2p91_A 94 EENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKV------ 167 (285)
T ss_dssp HHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSB------
T ss_pred HHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccC------
Confidence 68999999997542 223445668999999999999999876532 249999999765421
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|+++..........+...+....+..
T Consensus 168 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~--------- 232 (285)
T 2p91_A 168 ------VPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFG--------- 232 (285)
T ss_dssp ------CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTTS---------
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCCC---------
Confidence 1345789999999999999998875 8999999999999986432211222222222222211
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+.+++|+|.+++.++...... ..|++|++.++.
T Consensus 233 ---~~~~~~dva~~~~~l~s~~~~~----------~tG~~~~vdgg~ 266 (285)
T 2p91_A 233 ---KPITIEDVGDTAVFLCSDWARA----------ITGEVVHVDNGY 266 (285)
T ss_dssp ---SCCCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTG
T ss_pred ---CCcCHHHHHHHHHHHcCCcccC----------CCCCEEEECCCc
Confidence 2567999999999998654321 234889998864
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-25 Score=209.75 Aligned_cols=231 Identities=13% Similarity=0.041 Sum_probs=171.6
Q ss_pred cCCCCEEEEECCCC--hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAG--FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.+++|+||||||+| +||++++++|+++|++|++++|+.. ..............+.++.+|++|.++++++++.+
T Consensus 27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 102 (296)
T 3k31_A 27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSET----FKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVL 102 (296)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChH----HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH
Confidence 36789999999997 9999999999999999999999532 11111111112245789999999999999999875
Q ss_pred -----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||+... ..+.+++...+++|+.|+.++++++..... ..+||++||...+.
T Consensus 103 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~-------- 174 (296)
T 3k31_A 103 AEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK-------- 174 (296)
T ss_dssp HHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS--------
T ss_pred HHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc--------
Confidence 78999999998642 233455678999999999999999976532 23999999977642
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.......|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+........+..
T Consensus 175 ----~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~---------- 240 (296)
T 3k31_A 175 ----VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPLR---------- 240 (296)
T ss_dssp ----CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTTS----------
T ss_pred ----CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCCCC----------
Confidence 11346799999999999999999885 8999999999999886542222222223333322222
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
.+...+|+|++++.++...... ..|+++++.+|..+
T Consensus 241 --r~~~pedvA~~v~fL~s~~a~~----------itG~~i~vdGG~~~ 276 (296)
T 3k31_A 241 --RNTTLDDVGGAALYLLSDLGRG----------TTGETVHVDCGYHV 276 (296)
T ss_dssp --SCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred --CCCCHHHHHHHHHHHcCCccCC----------ccCCEEEECCCccc
Confidence 2567899999999998765432 34589999887644
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=208.69 Aligned_cols=227 Identities=16% Similarity=0.076 Sum_probs=163.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ ......+.. ..++.++.+|++|.++++++++.+
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~D~~d~~~v~~~~~~~~~~ 83 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVM-----AAQAVVAGL-ENGGFAVEVDVTKRASVDAAMQKAIDA 83 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTC-TTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHH-hcCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999321 111111111 126889999999999999988854
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. +..++||++||...+..
T Consensus 84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 152 (263)
T 3ak4_A 84 LGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVG----------- 152 (263)
T ss_dssp HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC-----------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccC-----------
Confidence 679999999975432 233456789999999999998887542 31249999999776431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCCh----H-----HHHHHHHHcCCCCceeecC
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMA----Y-----FFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~----~-----~~~~~~~~~g~~~~~~~~~ 311 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++....... . ......+...
T Consensus 153 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 222 (263)
T 3ak4_A 153 -APLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSL--------- 222 (263)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHT---------
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhc---------
Confidence 1345789999999999999998875 8999999999999873210000 0 0011111111
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.....+++++|+|++++.++...... ..|++|++.+|..
T Consensus 223 ---~p~~~~~~~~dvA~~v~~l~s~~~~~----------~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 223 ---TPLGRIEEPEDVADVVVFLASDAARF----------MTGQGINVTGGVR 261 (263)
T ss_dssp ---CTTCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSSSS
T ss_pred ---CCCCCCcCHHHHHHHHHHHhCccccC----------CCCCEEEECcCEe
Confidence 11234789999999999998765321 2348999988753
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=210.82 Aligned_cols=229 Identities=14% Similarity=0.074 Sum_probs=163.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. . ...+... . .++.+|++|.++++++++.+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-----~-~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~~ 74 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-----K-EVAEAIG--G-AFFQVDLEDERERVRFVEEAAYA 74 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-----H-HHHHHHT--C-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-----H-HHHHHhh--C-CEEEeeCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999995532 1 1111111 4 78999999999999988765
Q ss_pred --CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||...... +.++++..+++|+.|+.++++++.+ .+ .++||++||...+..
T Consensus 75 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~----------- 142 (256)
T 2d1y_A 75 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASVQGLFA----------- 142 (256)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTSB-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEccccccCC-----------
Confidence 6899999999754322 2334568999999999999888753 33 349999999765421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHH-cCCCCceeecCCCCcceee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL-NRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++.. ..+..... .......+. .......
T Consensus 143 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~ 212 (256)
T 2d1y_A 143 -EQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAV------LEAIALSPDPERTRRDWE---DLHALRR 212 (256)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH------HHHHC--------CHHHH---TTSTTSS
T ss_pred -CCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchh------hhccccccCCHHHHHHHH---hcCCCCC
Confidence 1345789999999999999998874 89999999999987521 01100000 111111110 1122345
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccH
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPV 366 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~ 366 (439)
+++++|+|++++.++...... ..|++|++.+|...++
T Consensus 213 ~~~~~dvA~~~~~l~s~~~~~----------~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 213 LGKPEEVAEAVLFLASEKASF----------ITGAILPVDGGMTASF 249 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGBC
T ss_pred CcCHHHHHHHHHHHhCchhcC----------CCCCEEEECCCccccc
Confidence 899999999999998765421 2348999998866554
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=211.30 Aligned_cols=230 Identities=11% Similarity=0.024 Sum_probs=165.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.++++++++.+
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQEN----VDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVN 87 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 111111111 1346888999999999999888754
Q ss_pred ---CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++. +.+ .++||++||...|..
T Consensus 88 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~--------- 157 (260)
T 2zat_A 88 LHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRG-GGSVLIVSSVGAYHP--------- 157 (260)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTSC---------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEechhhcCC---------
Confidence 67999999997431 12334566899999999988888864 344 349999999887642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.......-......+... ....
T Consensus 158 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~------------~~~~ 222 (260)
T 2zat_A 158 ---FPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKES------------LRIR 222 (260)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHH------------HTCS
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHHHhc------------CCCC
Confidence 1345789999999999999998875 899999999999887432000000000001000 1122
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
.+.+++|+|++++.++...... ..|++|++.+|..++
T Consensus 223 ~~~~~~dva~~v~~l~s~~~~~----------~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 223 RLGNPEDCAGIVSFLCSEDASY----------ITGETVVVGGGTASR 259 (260)
T ss_dssp SCBCGGGGHHHHHHHTSGGGTT----------CCSCEEEESTTCCCC
T ss_pred CCCCHHHHHHHHHHHcCcccCC----------ccCCEEEECCCcccc
Confidence 4789999999999998755431 234899999987665
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=209.37 Aligned_cols=227 Identities=13% Similarity=0.084 Sum_probs=151.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDV--- 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~--- 172 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ .......+.. ...++.++.+|++|.++++++++.
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY----ELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 87 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999432 1111111111 134688999999999999988865
Q ss_pred ---cCccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 173 ---VSFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 173 ---~~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
-++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~--------- 157 (266)
T 1xq1_A 88 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGC-GNIIFMSSIAGVVS--------- 157 (266)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CEEEEEC----------------
T ss_pred HhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEccchhccC---------
Confidence 3679999999975432 233455678999999999999988 44553 49999999876531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
..+...|+.+|++.+.+++.++.++ |+++++||||.|+++...... ...+...+.. .....
T Consensus 158 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~------------~~~~~ 221 (266)
T 1xq1_A 158 ---ASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY-DDEFKKVVIS------------RKPLG 221 (266)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------------
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhc-CHHHHHHHHh------------cCCCC
Confidence 1346799999999999999998875 899999999999998543110 0001111111 11122
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.+++++|+|++++.++...... ..|++|++.+|..
T Consensus 222 ~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 222 RFGEPEEVSSLVAFLCMPAASY----------ITGQTICVDGGLT 256 (266)
T ss_dssp --CCGGGGHHHHHHHTSGGGTT----------CCSCEEECCCCEE
T ss_pred CCcCHHHHHHHHHHHcCccccC----------ccCcEEEEcCCcc
Confidence 4789999999999998654321 2348999988754
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=207.50 Aligned_cols=227 Identities=13% Similarity=0.065 Sum_probs=167.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ........ .....+.++.+|++|.++++++++.+
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQAS----AEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKA 78 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999994321 11111111 11357899999999999999988765
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||+.... .+.++++..+++|+.|+.++++++.+ .+. .+||++||...+..
T Consensus 79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~---------- 147 (247)
T 3lyl_A 79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRW-GRIISIGSVVGSAG---------- 147 (247)
T ss_dssp TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHC----------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-eEEEEEcchhhccC----------
Confidence 689999999985432 23455678999999999998888643 332 39999999765421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... .........+. ....
T Consensus 148 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~------------~~~~ 211 (247)
T 3lyl_A 148 --NPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLT--DEQKSFIATKI------------PSGQ 211 (247)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSC--HHHHHHHHTTS------------TTCC
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhcc--HHHHHHHhhcC------------CCCC
Confidence 1346789999999999999998874 899999999999987543211 12222222221 1234
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+.+++|+|++++.++...... ..|++|++.+|..+
T Consensus 212 ~~~~~dva~~i~~l~s~~~~~----------~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 212 IGEPKDIAAAVAFLASEEAKY----------ITGQTLHVNGGMYM 246 (247)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSSC
T ss_pred CcCHHHHHHHHHHHhCCCcCC----------ccCCEEEECCCEec
Confidence 788999999999998765432 34589999887544
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=208.47 Aligned_cols=227 Identities=16% Similarity=0.083 Sum_probs=161.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCe-EEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGI-FIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ ......+.. ...+ .++.+|++|.++++++++.+
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAA-----ALDRAAQEL-GAAVAARIVADVTDAEAMTAAAAEAEA 82 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHH-GGGEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHh-cccceeEEEEecCCHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999321 111111111 2356 88999999999999888653
Q ss_pred --CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||...... +.++++..+++|+.|+.++++++ ++.+. ++||++||...+...
T Consensus 83 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~---------- 151 (254)
T 2wsb_A 83 VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGA-GAIVNLGSMSGTIVN---------- 151 (254)
T ss_dssp HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC----------
T ss_pred hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEecchhccCC----------
Confidence 6799999999754322 23345678999999977777665 44453 499999998765421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
+..+...|+.+|++.|.+++.++.++ |+++++||||.|+++..........+...+....+ ...+
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~ 219 (254)
T 2wsb_A 152 RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTP------------MGRC 219 (254)
T ss_dssp SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTST------------TSSC
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcCC------------CCCC
Confidence 11234789999999999999998875 89999999999998742100000112222222211 1247
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
++++|+|++++.++...... ..|+++++.+|.
T Consensus 220 ~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~ 251 (254)
T 2wsb_A 220 GEPSEIAAAALFLASPAASY----------VTGAILAVDGGY 251 (254)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred CCHHHHHHHHHHHhCccccc----------ccCCEEEECCCE
Confidence 89999999999998754321 234899998763
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=208.55 Aligned_cols=222 Identities=16% Similarity=0.131 Sum_probs=158.7
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
..+.+|+||||||+|+||++++++|+++|++|++++|+.+. . .+.....++.++.+|++|.++++++++.+
T Consensus 23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~----~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 94 (260)
T 3gem_A 23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHA----S----VTELRQAGAVALYGDFSCETGIMAFIDLLK 94 (260)
T ss_dssp ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCH----H----HHHHHHHTCEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHH----H----HHHHHhcCCeEEECCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999996542 1 11112235899999999999999988765
Q ss_pred ----CccEEEEcccccCccc---cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVRY---AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~---~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... ..++++..+++|+.|+.++++++.. .+ ..+||++||...+..
T Consensus 95 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~---------- 163 (260)
T 3gem_A 95 TQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASE-VADIVHISDDVTRKG---------- 163 (260)
T ss_dssp HHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGTC----------
T ss_pred HhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEEECChhhcCC----------
Confidence 6899999999754322 2344567999999999999888753 33 249999999776531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
..+...|+.+|++.+.+++.++.++ ++++++|+||.|.++..... .+...+....+. .-+
T Consensus 164 --~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~----~~~~~~~~~~p~------------~r~ 225 (260)
T 3gem_A 164 --SSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDDA----AYRANALAKSAL------------GIE 225 (260)
T ss_dssp --CSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC-------------------CCS------------CCC
T ss_pred --CCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCCH----HHHHHHHhcCCC------------CCC
Confidence 1346789999999999999999986 59999999999987743211 111112222222 124
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
..++|+|++++.+++... ..|+++++.+|..++
T Consensus 226 ~~~edva~~v~~L~~~~~------------itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 226 PGAEVIYQSLRYLLDSTY------------VTGTTLTVNGGRHVK 258 (260)
T ss_dssp CCTHHHHHHHHHHHHCSS------------CCSCEEEESTTTTTC
T ss_pred CCHHHHHHHHHHHhhCCC------------CCCCEEEECCCcccC
Confidence 568999999999984222 345899998886554
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-25 Score=205.48 Aligned_cols=223 Identities=12% Similarity=0.060 Sum_probs=165.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|++|||||+|+||++++++|+++|++|++++|+.+ ......+.. ...+.++.+|++|.++++++++.+
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSES-----GAQAISDYL-GDNGKGMALNVTNPESIEAVLKAITDE 80 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHh-cccceEEEEeCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999321 111111112 235788999999999999998865
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||+.... .+.++++..+++|+.|+.++++++.. .+. ++||++||...+.
T Consensus 81 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~------------ 147 (248)
T 3op4_A 81 FGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQ-GRIINVGSVVGTM------------ 147 (248)
T ss_dssp HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHH------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEEcchhhcC------------
Confidence 689999999985432 23455678999999999999888743 442 3999999965532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
...+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+...... ...........+. ..+
T Consensus 148 ~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~p~------------~r~ 213 (248)
T 3op4_A 148 GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALN--DEQRTATLAQVPA------------GRL 213 (248)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSC--HHHHHHHHHTCTT------------CSC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcC--HHHHHHHHhcCCC------------CCC
Confidence 11356789999999999999999874 899999999999887543211 1222222222221 236
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+++|+|++++.++...... ..|+++++.+|.
T Consensus 214 ~~p~dva~~v~~L~s~~~~~----------itG~~i~vdgG~ 245 (248)
T 3op4_A 214 GDPREIASAVAFLASPEAAY----------ITGETLHVNGGM 245 (248)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHcCCccCC----------ccCcEEEECCCe
Confidence 78999999999988755432 345899998764
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=209.19 Aligned_cols=220 Identities=12% Similarity=0.025 Sum_probs=164.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
..++|+||||||+|+||++++++|+++|++|++++|+.... ...+.++.+|++|.++++++++.+
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD-------------VNVSDHFKIDVTNEEEVKEAVEKTTK 77 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C-------------TTSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc-------------cCceeEEEecCCCHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999954321 236778999999999999998865
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||...... +.++++..+++|+.|+.++++++.. .+. ++||++||...+..
T Consensus 78 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~---------- 146 (269)
T 3vtz_A 78 KYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGH-GSIINIASVQSYAA---------- 146 (269)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSB----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEECchhhccC----------
Confidence 7899999999754322 2344567899999999888887643 342 39999999887642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCC---------CCChHHHHHHHHHcCCCCceeecC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGR---------PDMAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
..+...|+.||++.+.+++.++.++ ++++++|+||.|+++... ...........+....
T Consensus 147 --~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 216 (269)
T 3vtz_A 147 --TKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQH-------- 216 (269)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHS--------
T ss_pred --CCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcC--------
Confidence 1346789999999999999999987 899999999999886311 0000011111111111
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
....+.+++|+|++++.++...... ..|+++++.+|..
T Consensus 217 ----p~~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~ 254 (269)
T 3vtz_A 217 ----PMGRIGRPEEVAEVVAFLASDRSSF----------ITGACLTVDGGLL 254 (269)
T ss_dssp ----TTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred ----CCCCCcCHHHHHHHHHHHhCCccCC----------CcCcEEEECCCcc
Confidence 1224678999999999998765432 3458999988753
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=209.67 Aligned_cols=226 Identities=13% Similarity=0.091 Sum_probs=166.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|.... ......... .....+.++.+|++|.++++++++.+
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~ 102 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAG---AADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIE 102 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChH---HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999983321 111111111 12357889999999999999998865
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~---------- 171 (269)
T 4dmm_A 103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRS-GRIINIASVVGEMG---------- 171 (269)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCHHHHHC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECchhhcCC----------
Confidence 789999999985432 2345567899999999999988873 3443 49999999665321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++.... .....+....+. ..
T Consensus 172 --~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-----~~~~~~~~~~p~------------~r 232 (269)
T 4dmm_A 172 --NPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE-----LAAEKLLEVIPL------------GR 232 (269)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH-----HHHHHHGGGCTT------------SS
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc-----ccHHHHHhcCCC------------CC
Confidence 1346789999999999999998874 8999999999999875431 111222222221 23
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+.+++|+|.+++.++..+.... ..|+++++.+|..+
T Consensus 233 ~~~~~dvA~~v~~l~s~~~~~~---------itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 233 YGEAAEVAGVVRFLAADPAAAY---------ITGQVINIDGGLVM 268 (269)
T ss_dssp CBCHHHHHHHHHHHHHCGGGGG---------CCSCEEEESTTSCC
T ss_pred CCCHHHHHHHHHHHhCCcccCC---------CcCCEEEECCCeec
Confidence 6788999999999988643221 33489999887654
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-25 Score=208.50 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=166.3
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+.+ ........ ....+.++.+|++|.++++++++.+
T Consensus 24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~-----~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (277)
T 4dqx_A 24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNED-----AAVRVANE-IGSKAFGVRVDVSSAKDAESMVEKTTA 97 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHH-HCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHH-hCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999321 11111111 2357899999999999999998865
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.. .+ .++||++||...+..
T Consensus 98 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~---------- 166 (277)
T 4dqx_A 98 KWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNG-GGSIINTTSYTATSA---------- 166 (277)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTT-CEEEEEECCGGGTSC----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhCcC----------
Confidence 789999999975432 23445567899999999988888743 33 239999999876531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCC----CCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGR----PDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++... ...........+....
T Consensus 167 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~------------ 232 (277)
T 4dqx_A 167 --IADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARA------------ 232 (277)
T ss_dssp --CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTS------------
T ss_pred --CCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcC------------
Confidence 1346789999999999999998885 899999999999876210 0000001111111111
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
....+.+++|+|++++.++...... ..|+++++.+|..++
T Consensus 233 ~~~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 233 VMDRMGTAEEIAEAMLFLASDRSRF----------ATGSILTVDGGSSIG 272 (277)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSSSSSC
T ss_pred cccCCcCHHHHHHHHHHHhCCccCC----------CcCCEEEECCchhhh
Confidence 2234678999999999998765432 345899998876543
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=209.66 Aligned_cols=228 Identities=11% Similarity=0.048 Sum_probs=166.0
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+ |+||++++++|+++|++|++++|+.+ ......... . ....+.++.+|++|.++++++++.+
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~-~--~~~~~~~~~~D~~~~~~v~~~~~~~~ 79 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIA-Q--ELNSPYVYELDVSKEEHFKSLYNSVK 79 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHH-H--HTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHH-H--hcCCcEEEEcCCCCHHHHHHHHHHHH
Confidence 678999999999 99999999999999999999999653 111111111 1 1134889999999999999988765
Q ss_pred ----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+.-. .++||++||...+.
T Consensus 80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~--------- 150 (275)
T 2pd4_A 80 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK--------- 150 (275)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS---------
T ss_pred HHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC---------
Confidence 68999999997543 223455678999999999999999976521 13999999976542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
...+...|+.+|++.+.+++.++.++ |+++++|+||.|.++..........+...+....+..
T Consensus 151 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~----------- 216 (275)
T 2pd4_A 151 ---YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLR----------- 216 (275)
T ss_dssp ---BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTS-----------
T ss_pred ---CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCCcC-----------
Confidence 11345689999999999999998886 8999999999999875331111122222222222211
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+.+++|+|.+++.++...... ..|+.+++.++.
T Consensus 217 -~~~~p~dva~~~~~l~s~~~~~----------~tG~~~~vdgg~ 250 (275)
T 2pd4_A 217 -KNVSLEEVGNAGMYLLSSLSSG----------VSGEVHFVDAGY 250 (275)
T ss_dssp -SCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred -CCCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCc
Confidence 2567899999999998754321 234889888764
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-25 Score=204.87 Aligned_cols=224 Identities=14% Similarity=0.053 Sum_probs=160.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ ......+.. ...+.++.+|++|.++++++++.+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE-----EGAATAREL-GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTT-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHh-CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999321 111111111 246889999999999999888754
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHH----HHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSL----LEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~l----l~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++ ++.+++.+. ++||++||...+..
T Consensus 77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~----------- 144 (254)
T 1hdc_A 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGG-GSIVNISSAAGLMG----------- 144 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEECchhhccC-----------
Confidence 679999999975432 23445678999999998754 444555553 49999999876531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++.. ... .......+ ........+
T Consensus 145 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~----------~~~-~~~~~~~~---~~~~p~~~~ 209 (254)
T 1hdc_A 145 -LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT----------AET-GIRQGEGN---YPNTPMGRV 209 (254)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----------HHH-TCCCSTTS---CTTSTTSSC
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc----------ccc-chhHHHHH---HhcCCCCCC
Confidence 1346789999999999999998874 89999999999988621 111 11111111 011111236
Q ss_pred e-eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 321 T-YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 321 i-~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
. +++|+|++++.++...... ..|+.+++.++..
T Consensus 210 ~~~~~dvA~~v~~l~s~~~~~----------~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 210 GNEPGEIAGAVVKLLSDTSSY----------VTGAELAVDGGWT 243 (254)
T ss_dssp B-CHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred CCCHHHHHHHHHHHhCchhcC----------CCCCEEEECCCcc
Confidence 7 8999999999998765421 2348999988753
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=211.12 Aligned_cols=230 Identities=14% Similarity=0.064 Sum_probs=165.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ ......... ..++.++.+|++|.++++++++.+
T Consensus 27 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (277)
T 3gvc_A 27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGD-----AADAAATKI-GCGAAACRVDVSDEQQIIAMVDACVAA 100 (277)
T ss_dssp CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHHH-CSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHc-CCcceEEEecCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999321 111111111 457899999999999999988865
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.. .+ ..+||++||...+.
T Consensus 101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~------------ 167 (277)
T 3gvc_A 101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERG-GGAIVNLSSLAGQV------------ 167 (277)
T ss_dssp HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTS------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhcc------------
Confidence 789999999985432 23455678999999999988888743 33 34999999976542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCC---Ccce
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH---GTVA 317 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~ 317 (439)
...+...|+.+|.+.+.+++.++.+ .|+++++|+||.|++|.. ........-........ ....
T Consensus 168 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 237 (277)
T 3gvc_A 168 AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ----------QTAMAMFDGALGAGGARSMIARLQ 237 (277)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----------HHHHTCC------CCHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchH----------HHhhhcchhhHHHHhhhhhhhccc
Confidence 1134678999999999999999887 489999999999998621 11111000000000000 0112
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
..+.+++|+|++++.++...... ..|+++++.+|...+
T Consensus 238 ~r~~~pedvA~~v~~L~s~~a~~----------itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 238 GRMAAPEEMAGIVVFLLSDDASM----------ITGTTQIADGGTIAA 275 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGS
T ss_pred cCCCCHHHHHHHHHHHcCCccCC----------ccCcEEEECCcchhc
Confidence 34788999999999998765432 345899998876543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=208.98 Aligned_cols=228 Identities=14% Similarity=0.118 Sum_probs=165.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC-CCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF-NDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+||||++++++|+++|++|++++|+ .+. ......+. ....++.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPAN----IDETIASMRADGGDAAFFAADLATSEACQQLVDEFV 80 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTT----HHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhh----HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999996 322 11111111 11346889999999999999998854
Q ss_pred ----CccEEEEcccc-cCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cC----CCCeEEEecCCcccCCCCCC
Q 013602 174 ----SFTHVMHLAAQ-AGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----AN----PQPAIVWASSSSVYGLNTKV 236 (439)
Q Consensus 174 ----~~d~Vi~~Ag~-~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~----~~~~~V~~SS~~v~g~~~~~ 236 (439)
++|+||||||. .... .+.++++..+++|+.|+.++++++.+ .+ ..++||++||...+..
T Consensus 81 ~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---- 156 (258)
T 3afn_B 81 AKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG---- 156 (258)
T ss_dssp HHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC----
T ss_pred HHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC----
Confidence 67999999996 3221 12334567899999999988887642 11 1149999999776531
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCC
Q 013602 237 PFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 237 ~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
...+...|+.+|.+.|.+++.++.++ |+++++||||.|+++..... ...+...+..+.+
T Consensus 157 -------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~--------- 218 (258)
T 3afn_B 157 -------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK--TQDVRDRISNGIP--------- 218 (258)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC--CHHHHHHHHTTCT---------
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc--CHHHHHHHhccCC---------
Confidence 11356789999999999999998875 89999999999999854321 1223333333322
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
...+++++|+|++++.++....... ..|++|++.++.
T Consensus 219 ---~~~~~~~~dva~~~~~l~~~~~~~~---------~~G~~~~v~gg~ 255 (258)
T 3afn_B 219 ---MGRFGTAEEMAPAFLFFASHLASGY---------ITGQVLDINGGQ 255 (258)
T ss_dssp ---TCSCBCGGGTHHHHHHHHCHHHHTT---------CCSEEEEESTTS
T ss_pred ---CCcCCCHHHHHHHHHHHhCcchhcc---------ccCCEEeECCCc
Confidence 1247899999999999987654300 234899998865
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=210.21 Aligned_cols=230 Identities=12% Similarity=0.058 Sum_probs=164.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.. ........+.. ...++.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~---~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE---DEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCCh---HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998321 11111111111 1346889999999999999888754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.++.++++++.+ .+..++||++||...+.
T Consensus 82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~----------- 150 (261)
T 1gee_A 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI----------- 150 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC-----------
Confidence 679999999975432 23345668999999999888877653 33134999999977542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
+..+...|+.+|++.+.+++.++.++ |+++++||||.|+++..........+...+.... + ...
T Consensus 151 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~--~----------~~~ 217 (261)
T 1gee_A 151 -PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMI--P----------MGY 217 (261)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTC--T----------TSS
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcC--C----------CCC
Confidence 12456799999999999999998875 8999999999999874321000011122222211 1 124
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+++++|+|++++.++...... ..|+++++.++..
T Consensus 218 ~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~~ 251 (261)
T 1gee_A 218 IGEPEEIAAVAAWLASSEASY----------VTGITLFADGGMT 251 (261)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred CcCHHHHHHHHHHHhCccccC----------CCCcEEEEcCCcc
Confidence 789999999999998754321 2348999988753
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=219.60 Aligned_cols=231 Identities=18% Similarity=0.204 Sum_probs=170.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
++||||||||+||++++++|+++|++|++++|+.+. ... ....+...+++++.+|++|.+++.++++++ |+||
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~---~~~--~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~--d~vi 84 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSS---KTT--LLDEFQSLGAIIVKGELDEHEKLVELMKKV--DVVI 84 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCS---CHH--HHHHHHHTTCEEEECCTTCHHHHHHHHTTC--SEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCc---hhh--HHHHhhcCCCEEEEecCCCHHHHHHHHcCC--CEEE
Confidence 589999999999999999999999999999996541 111 111123458999999999999999999987 9999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC-CChHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP-ASLYAATKKAG 258 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p-~~~Y~~sK~a~ 258 (439)
|+|+... +.++.+++++|++.+..++||+ | +||... .+.... .| ...| .+|.++
T Consensus 85 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~sK~~~ 139 (318)
T 2r6j_A 85 SALAFPQ---------------ILDQFKILEAIKVAGNIKRFLP-S---DFGVEE----DRINAL-PPFEALI-ERKRMI 139 (318)
T ss_dssp ECCCGGG---------------STTHHHHHHHHHHHCCCCEEEC-S---CCSSCT----TTCCCC-HHHHHHH-HHHHHH
T ss_pred ECCchhh---------------hHHHHHHHHHHHhcCCCCEEEe-e---ccccCc----ccccCC-CCcchhH-HHHHHH
Confidence 9998632 3457899999999882348874 4 344221 121211 22 3468 999999
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
|.++++ .|++++++||+.+++. ....+......++.+..+ ++++..++|++++|+|++++.++..+.
T Consensus 140 e~~~~~----~~~~~~~lr~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~~~l~~~~ 206 (318)
T 2r6j_A 140 RRAIEE----ANIPYTYVSANCFASY------FINYLLRPYDPKDEITVY---GTGEAKFAMNYEQDIGLYTIKVATDPR 206 (318)
T ss_dssp HHHHHH----TTCCBEEEECCEEHHH------HHHHHHCTTCCCSEEEEE---TTSCCEEEEECHHHHHHHHHHHTTCGG
T ss_pred HHHHHh----cCCCeEEEEcceehhh------hhhhhccccCCCCceEEe---cCCCceeeEeeHHHHHHHHHHHhcCcc
Confidence 998865 5899999999988763 112222211233334443 567889999999999999999998654
Q ss_pred hccCCCCCccCCCCCcEEEecC-CCcccHHHHHHHHHHHhCCcccccccc
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGN-TSPVPVSDLVSILERLLKVKAKRNIMK 387 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~-~~~~t~~el~~~l~~~~g~~~~~~~~~ 387 (439)
. .+++|++.+ ++.+|+.|+++.+.+.+|.+.++...+
T Consensus 207 ~------------~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (318)
T 2r6j_A 207 A------------LNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244 (318)
T ss_dssp G------------TTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEEC
T ss_pred c------------cCeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecC
Confidence 2 127888875 578999999999999999887665544
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-25 Score=207.93 Aligned_cols=230 Identities=14% Similarity=0.079 Sum_probs=165.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
..+|+||||||+|+||++++++|+++|++|++++|+.. .......+.. ...++.++.+|++|.++++++++.+
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 80 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDT----TAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAM 80 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCCh----HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 35689999999999999999999999999999988432 1111111111 1257899999999999999999865
Q ss_pred ----CccEEEEcccccCc------cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||+... ..+.++++..+++|+.|+.++++++ ++.+. ++||++||.+.++..
T Consensus 81 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~iss~~~~~~~------ 153 (264)
T 3i4f_A 81 SHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNF-GRIINYGFQGADSAP------ 153 (264)
T ss_dssp HHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTTGGGCC------
T ss_pred HHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC-CeEEEEeechhcccC------
Confidence 78999999994211 2234456788999999999999987 55553 399999998554211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
...+...|+.+|++.+.+++.++.+ .|+++++|+||.|+++..... .......... ...
T Consensus 154 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~------------~~p 215 (264)
T 3i4f_A 154 ----GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEAT--IQEARQLKEH------------NTP 215 (264)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCC--HHHHHHC------------------
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhc--cHHHHHHHhh------------cCC
Confidence 1134579999999999999999888 489999999999998854321 1111111111 112
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
...+.+++|+|++++.++...... ..|+++++.+|-...
T Consensus 216 ~~r~~~~~dva~~v~~l~s~~~~~----------itG~~i~vdGG~~~~ 254 (264)
T 3i4f_A 216 IGRSGTGEDIARTISFLCEDDSDM----------ITGTIIEVTGAVDVI 254 (264)
T ss_dssp --CCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESCSCCCC
T ss_pred CCCCcCHHHHHHHHHHHcCcccCC----------CCCcEEEEcCceeec
Confidence 234678999999999998765432 345899998876543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=207.96 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=163.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDV--- 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~--- 172 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.++++++++.
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKE----LNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN 82 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 111111111 124688999999999999888864
Q ss_pred ---cCccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 173 ---VSFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 173 ---~~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
-++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ .++||++||...+..
T Consensus 83 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~--------- 152 (260)
T 2ae2_A 83 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE-RGNVVFISSVSGALA--------- 152 (260)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS-SEEEEEECCGGGTSC---------
T ss_pred HcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhccC---------
Confidence 2579999999975432 2344567899999999999998884 344 349999999776431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCC---CCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGR---PDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++... ...........+....
T Consensus 153 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~------------ 217 (260)
T 2ae2_A 153 ---VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRC------------ 217 (260)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTS------------
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcC------------
Confidence 1345789999999999999998885 899999999999876211 0000000000111111
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
....+.+++|+|++++.++...... ..|+++++.+|...
T Consensus 218 ~~~~~~~~~dvA~~v~~l~s~~~~~----------~tG~~~~vdgG~~~ 256 (260)
T 2ae2_A 218 ALRRMGEPKELAAMVAFLCFPAASY----------VTGQIIYVDGGLMA 256 (260)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCccccC----------CCCCEEEECCCccc
Confidence 1124789999999999998654321 23489999887544
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-25 Score=209.61 Aligned_cols=239 Identities=15% Similarity=0.120 Sum_probs=167.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC--------ChhHHHHHHHh--hhcCCeEEEEcccCCHHHH
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY--------DPSLKKARQAL--LERSGIFIVEGDINDMALL 166 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~--------~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~ 166 (439)
+++|++|||||+|+||++++++|+++|++|++++|+.... .........+. .....+.++.+|++|.+++
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 88 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL 88 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 6789999999999999999999999999999999853211 11111111111 1235789999999999999
Q ss_pred HHhhccc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCC
Q 013602 167 KKLFDVV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLN 233 (439)
Q Consensus 167 ~~~~~~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~ 233 (439)
+++++.+ ++|+||||||..... .+.++++..+++|+.|+.++++++. +.+...+||++||...+..
T Consensus 89 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~- 167 (277)
T 3tsc_A 89 RKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKM- 167 (277)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCC-
Confidence 9988864 689999999986542 2345567899999999998888754 3332339999999776431
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCC-Cceee
Q 013602 234 TKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKS-IPIFE 309 (439)
Q Consensus 234 ~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~-~~~~~ 309 (439)
......|+.||++.+.+++.++.++ |+++++|+||.|.++..... .............. ...+
T Consensus 168 -----------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~~~~- 234 (277)
T 3tsc_A 168 -----------QPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGD-MVTAVGQAMETNPQLSHVL- 234 (277)
T ss_dssp -----------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHH-HHHHHHHHHHTCGGGTTTT-
T ss_pred -----------CCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccch-hhhhhhhcccccHHHHHHh-
Confidence 1345789999999999999999885 89999999999988743311 00011111111111 1111
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..... .-+.+++|+|.+++.++...... ..|+++++.+|.
T Consensus 235 --~~~~p-~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 274 (277)
T 3tsc_A 235 --TPFLP-DWVAEPEDIADTVCWLASDESRK----------VTAAQIPVDQGS 274 (277)
T ss_dssp --CCSSS-CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred --hhccC-CCCCCHHHHHHHHHHHhCccccC----------CcCCEEeeCCCc
Confidence 01111 23889999999999998765532 345899998764
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=209.63 Aligned_cols=236 Identities=12% Similarity=0.071 Sum_probs=167.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+........... ......++.++.+|++|.++++++++.+
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l--~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 89 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKV--GKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 89 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHH--HHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHH--HHhcCCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999654321111111 1111357899999999999999888764
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. +..++||++||...+...... ..
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----~~- 164 (265)
T 1h5q_A 90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS----LN- 164 (265)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE----TT-
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc----cc-
Confidence 479999999975432 233455678999999999999987543 322499999997765321100 01
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
...+...|+.+|++.+.+++.++.++ |+++++||||.|+++..... ...+........+ . ..+
T Consensus 165 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~--~----------~~~ 230 (265)
T 1h5q_A 165 GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM--DKKIRDHQASNIP--L----------NRF 230 (265)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS--CHHHHHHHHHTCT--T----------SSC
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc--chhHHHHHHhcCc--c----------cCC
Confidence 11346789999999999999998874 89999999999998854311 1112222222211 1 136
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
++++|+|++++.++...... ..|+.|++.+|..
T Consensus 231 ~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 231 AQPEEMTGQAILLLSDHATY----------MTGGEYFIDGGQL 263 (265)
T ss_dssp BCGGGGHHHHHHHHSGGGTT----------CCSCEEEECTTGG
T ss_pred CCHHHHHHHHHhhccCchhc----------CcCcEEEecCCEe
Confidence 88999999999998765421 2348999988753
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-25 Score=208.61 Aligned_cols=232 Identities=14% Similarity=0.110 Sum_probs=169.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+ .......+.. ....+.++.+|++|.++++++++.+
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGN----ALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVR 81 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHH----HHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999432 1111111111 2357889999999999999988865
Q ss_pred ---CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||+... ..+.++++..+++|+.|+.++++++.. .+ .++||++||...+..
T Consensus 82 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~--------- 151 (280)
T 3tox_A 82 RFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG-GGSLTFTSSFVGHTA--------- 151 (280)
T ss_dssp HHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCSBTTTB---------
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcChhhCcC---------
Confidence 68999999997532 223455678999999999999888743 33 239999999776521
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC--hHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM--AYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
...+...|+.+|++.+.+++.++.++ |+++++|+||.|.++...... ........+....+.
T Consensus 152 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~----------- 218 (280)
T 3tox_A 152 --GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHAL----------- 218 (280)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTSTT-----------
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCcc-----------
Confidence 11346789999999999999999885 899999999999988532100 011122222222221
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccH
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPV 366 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~ 366 (439)
..+.+++|+|++++.++...... ..|+++++.+|..++.
T Consensus 219 -~r~~~pedvA~~v~~L~s~~a~~----------itG~~i~vdGG~~~~~ 257 (280)
T 3tox_A 219 -KRIARPEEIAEAALYLASDGASF----------VTGAALLADGGASVTK 257 (280)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGCC
T ss_pred -CCCcCHHHHHHHHHHHhCccccC----------CcCcEEEECCCccccc
Confidence 23678999999999998765432 3458999998876553
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=218.01 Aligned_cols=248 Identities=13% Similarity=0.087 Sum_probs=177.3
Q ss_pred cccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC------CCChhHHHHHHHhh-hcCCeEEEEcccCCHHHH
Q 013602 94 VRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND------YYDPSLKKARQALL-ERSGIFIVEGDINDMALL 166 (439)
Q Consensus 94 ~~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~------~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~ 166 (439)
+..+++|+||||||+|+||.+++++|+++|++|++++|+.. ...........+.. ....+.++.+|++|.+++
T Consensus 22 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 101 (322)
T 3qlj_A 22 MGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQA 101 (322)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHH
Confidence 33467899999999999999999999999999999998621 00111122112211 234688999999999999
Q ss_pred HHhhccc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCC---------CCeEEEecCCc
Q 013602 167 KKLFDVV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANP---------QPAIVWASSSS 228 (439)
Q Consensus 167 ~~~~~~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~---------~~~~V~~SS~~ 228 (439)
+++++.+ ++|+||||||..... .+.++++..+++|+.|+.++++++..... ..+||++||..
T Consensus 102 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~ 181 (322)
T 3qlj_A 102 AGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGA 181 (322)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHH
Confidence 9988865 689999999985432 23455678999999999999988743210 13999999966
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCC
Q 013602 229 VYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSI 305 (439)
Q Consensus 229 v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~ 305 (439)
.+.. ..+...|+.||++.+.+++.++.+ .|+++++|+|| +..+.......
T Consensus 182 ~~~~------------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~-------------- 234 (322)
T 3qlj_A 182 GLQG------------SVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFA-------------- 234 (322)
T ss_dssp HHHC------------BTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCC--------------
T ss_pred HccC------------CCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhh--------------
Confidence 5421 134578999999999999999988 48999999999 76553221100
Q ss_pred ceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc-----------------cHHH
Q 013602 306 PIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV-----------------PVSD 368 (439)
Q Consensus 306 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------t~~e 368 (439)
... ........++.++|+|.+++.++...... ..|++|++.+|... ++.|
T Consensus 235 ~~~---~~~~~~~~~~~pedva~~v~~L~s~~~~~----------itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~e 301 (322)
T 3qlj_A 235 EMM---ATQDQDFDAMAPENVSPLVVWLGSAEARD----------VTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAE 301 (322)
T ss_dssp C-----------CCTTCGGGTHHHHHHHTSGGGGG----------CCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGG
T ss_pred hhh---hccccccCCCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCccccCCCcccccccCccCCCCHHH
Confidence 000 01112234568999999999998655432 23488998887644 7799
Q ss_pred HHHHHHHHhCCcc
Q 013602 369 LVSILERLLKVKA 381 (439)
Q Consensus 369 l~~~l~~~~g~~~ 381 (439)
+++.+.+.+|.+.
T Consensus 302 l~~~~~~~~~~~~ 314 (322)
T 3qlj_A 302 LGPVVADLLGKAR 314 (322)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHhhccC
Confidence 9999999998543
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=208.41 Aligned_cols=231 Identities=11% Similarity=0.035 Sum_probs=166.9
Q ss_pred cCCCCEEEEECCCCh--HHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGF--VGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~--IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.+++|+||||||+|+ ||++++++|+++|++|++++|+.. ..............+.++.+|++|.++++++++.+
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 103 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDA----LKKRVEPLAEELGAFVAGHCDVADAASIDAVFETL 103 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHH----HHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHH
Confidence 367899999999977 999999999999999999998421 11111111112246889999999999999998865
Q ss_pred -----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||+... ..+.++++..+++|+.++.++++++..... ..+||++||...+..
T Consensus 104 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~------- 176 (293)
T 3grk_A 104 EKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKV------- 176 (293)
T ss_dssp HHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSB-------
T ss_pred HHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccC-------
Confidence 78999999998642 223455668999999999999999876432 239999999776531
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
......|+.+|++.+.+++.++.++ |+++++|+||.|.++...................+..
T Consensus 177 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~---------- 241 (293)
T 3grk_A 177 -----MPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLR---------- 241 (293)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHSTTS----------
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCCC----------
Confidence 1346799999999999999999884 8999999999999875432222222223233322221
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
.+..++|+|.+++.++...... ..|+++++.+|..+
T Consensus 242 --r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~~ 277 (293)
T 3grk_A 242 --RTVTIDEVGDVGLYFLSDLSRS----------VTGEVHHADSGYHV 277 (293)
T ss_dssp --SCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred --CCCCHHHHHHHHHHHcCccccC----------CcceEEEECCCccc
Confidence 2567899999999998765432 34589999887543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=208.89 Aligned_cols=226 Identities=18% Similarity=0.118 Sum_probs=164.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|... ........+.. ...++.++.+|++|.++++++++.+
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS---KAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCch---HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998321 11111111111 1346889999999999999988754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCccc-CCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA---NPQPAIVWASSSSVY-GLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~---~~~~~~V~~SS~~v~-g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. + ++||++||...+ ..
T Consensus 96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~iv~~sS~~~~~~~---------- 163 (274)
T 1ja9_A 96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG--GRIILTSSIAAVMTG---------- 163 (274)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE--EEEEEECCGGGTCCS----------
T ss_pred HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CEEEEEcChHhccCC----------
Confidence 679999999975432 233445689999999999999988764 3 399999998775 31
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC-----------CChHHHHHHHHHcCCCCcee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP-----------DMAYFFFTRDILNRKSIPIF 308 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~-----------~~~~~~~~~~~~~g~~~~~~ 308 (439)
..+...|+.+|++.|.+++.++.++ |+++++++||.|+++.... ......+...+..+
T Consensus 164 --~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 235 (274)
T 1ja9_A 164 --IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANM------ 235 (274)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHT------
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhc------
Confidence 1345789999999999999998875 8999999999998763210 00001111111111
Q ss_pred ecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 309 ESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 309 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.....|++++|+|++++.++...... ..|++|++++|
T Consensus 236 ------~~~~~~~~~~dva~~i~~l~~~~~~~----------~~G~~~~v~gG 272 (274)
T 1ja9_A 236 ------NPLKRIGYPADIGRAVSALCQEESEW----------INGQVIKLTGG 272 (274)
T ss_dssp ------STTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred ------CCCCCccCHHHHHHHHHHHhCccccc----------ccCcEEEecCC
Confidence 12345899999999999998765421 23489999876
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=214.37 Aligned_cols=233 Identities=14% Similarity=0.102 Sum_probs=168.4
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHH-hhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQA-LLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.+++|+||||||+|+||++++++|+++|++|++.+|+.+. ......... .....++.++.+|++|.++++++++.+
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 123 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEE--EDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAR 123 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGH--HHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcch--hHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999884210 001111111 112357889999999999999888764
Q ss_pred ----CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++..... ..+||++||...+..
T Consensus 124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~----------- 192 (294)
T 3r3s_A 124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQP----------- 192 (294)
T ss_dssp HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSC-----------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccC-----------
Confidence 68999999997532 123455678999999999999999976542 239999999887642
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|+++...... ........+ ........+
T Consensus 193 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~---------~~~~~~~~~---~~~~p~~r~ 259 (294)
T 3r3s_A 193 -SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGG---------QTQDKIPQF---GQQTPMKRA 259 (294)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTT---------SCGGGSTTT---TTTSTTSSC
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccC---------CCHHHHHHH---HhcCCCCCC
Confidence 1346789999999999999999885 899999999999986310000 000000001 112223347
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
..++|+|++++.++...... ..|+++++.+|..+
T Consensus 260 ~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~~l 293 (294)
T 3r3s_A 260 GQPAELAPVYVYLASQESSY----------VTAEVHGVCGGEHL 293 (294)
T ss_dssp BCGGGGHHHHHHHHSGGGTT----------CCSCEEEESTTCCC
T ss_pred cCHHHHHHHHHHHhCccccC----------CCCCEEEECCCccC
Confidence 78999999999998765432 34589999887654
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=205.89 Aligned_cols=228 Identities=12% Similarity=0.080 Sum_probs=161.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDV--- 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~--- 172 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ .......+.. ...++.++.+|++|.++++++++.
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 94 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK----ELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH 94 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999432 1111111111 134688999999999999888864
Q ss_pred ---cCccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 173 ---VSFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 173 ---~~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
-++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 95 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~--------- 164 (273)
T 1ae1_A 95 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQN-GNVIFLSSIAGFSA--------- 164 (273)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-EEEEEECCGGGTSC---------
T ss_pred HcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcCHhhcCC---------
Confidence 2679999999975432 2344566889999999999998874 3442 39999999887642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCCh----HHHHHHHHHcCCCCceeecCCCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMA----YFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++....... ...+...+....+ .
T Consensus 165 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p--~------- 232 (273)
T 1ae1_A 165 ---LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP--M------- 232 (273)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST--T-------
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCC--C-------
Confidence 1345789999999999999998875 8999999999999985321100 0011111221111 1
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
..+.+++|+|++++.++...... ..|+++++.+|..
T Consensus 233 ---~r~~~p~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 233 ---GRAGKPQEVSALIAFLCFPAASY----------ITGQIIWADGGFT 268 (273)
T ss_dssp ---CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred ---CCCcCHHHHHHHHHHHhCccccC----------cCCCEEEECCCcc
Confidence 13678999999999998654321 2348999988743
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=199.59 Aligned_cols=220 Identities=17% Similarity=0.165 Sum_probs=165.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
.+||++|||||+++||+++++.|+++|++|++.+|+.+.... ....++..+.+|++|+++++++++.+ ++
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~---------~~~~~~~~~~~Dv~~~~~v~~~~~~~g~i 79 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA---------PRHPRIRREELDITDSQRLQRLFEALPRL 79 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS---------CCCTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh---------hhcCCeEEEEecCCCHHHHHHHHHhcCCC
Confidence 479999999999999999999999999999999996654322 22457899999999999999999887 68
Q ss_pred cEEEEcccccCc--cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGV--RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPAS 249 (439)
Q Consensus 176 d~Vi~~Ag~~~~--~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~ 249 (439)
|++|||||+... ..+.++++..+++|+.|+..+.+++. +.+ .+||++||..... ......
T Consensus 80 DiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~--G~IVnisS~~~~~------------~~~~~~ 145 (242)
T 4b79_A 80 DVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG--GSILNIASMYSTF------------GSADRP 145 (242)
T ss_dssp SEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--EEEEEECCGGGTS------------CCSSCH
T ss_pred CEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEeeccccC------------CCCCCH
Confidence 999999997543 23345677899999999877777663 333 3999999976432 113457
Q ss_pred hHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHH
Q 013602 250 LYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDI 326 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dv 326 (439)
.|+.||.+...+++.++.++ ||++++|.||.|..|-......-......+.+..+... +...+|+
T Consensus 146 ~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~PlgR------------~g~peei 213 (242)
T 4b79_A 146 AYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLAR------------WGEAPEV 213 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTCS------------CBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCCC------------CcCHHHH
Confidence 89999999999999999885 89999999999987743211111233444444444433 4557999
Q ss_pred HHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 327 a~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
|.+++.++...... ..|+++.+.+|
T Consensus 214 A~~v~fLaSd~a~~----------iTG~~l~VDGG 238 (242)
T 4b79_A 214 ASAAAFLCGPGASF----------VTGAVLAVDGG 238 (242)
T ss_dssp HHHHHHHTSGGGTT----------CCSCEEEESTT
T ss_pred HHHHHHHhCchhcC----------ccCceEEECcc
Confidence 99999998655432 34588988765
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=208.17 Aligned_cols=225 Identities=13% Similarity=0.060 Sum_probs=161.3
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
..+++|+||||||+|+||++++++|+++|++|++.+|+.+ ......+. ....+.++.+|++|.++++++++.+
T Consensus 23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~-----~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (266)
T 3grp_A 23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTRED-----KLKEIAAD-LGKDVFVFSANLSDRKSIKQLAEVAE 96 (266)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHH-HCSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHH-hCCceEEEEeecCCHHHHHHHHHHHH
Confidence 3468899999999999999999999999999999998321 11111111 2357899999999999999988764
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||..... .+.++++..+++|+.|+.++.+++ ++.+. ++||++||...+..
T Consensus 97 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~Iv~isS~~~~~~--------- 166 (266)
T 3grp_A 97 REMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRY-GRIINITSIVGVVG--------- 166 (266)
T ss_dssp HHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCC--------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEECCHHHcCC---------
Confidence 689999999975432 234566789999999976666665 34443 39999999765421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .......+....+. .
T Consensus 167 ---~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~------------~ 229 (266)
T 3grp_A 167 ---NPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL--NEKQKEAIMAMIPM------------K 229 (266)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC--CHHHHHHHHTTCTT------------C
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc--CHHHHHHHHhcCCC------------C
Confidence 1345789999999999999999874 89999999999988632111 11222333333322 2
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+.+++|+|.+++.++...... ..|+++++.+|.
T Consensus 230 r~~~~edvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 263 (266)
T 3grp_A 230 RMGIGEEIAFATVYLASDEAAY----------LTGQTLHINGGM 263 (266)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred CCcCHHHHHHHHHHHhCccccC----------ccCCEEEECCCe
Confidence 3677899999999998765432 345899998764
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=208.69 Aligned_cols=232 Identities=12% Similarity=0.050 Sum_probs=158.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ ....... .....+.++.+|++|.++++++++.+
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKA-----GAERVAG-EIGDAALAVAADISKEADVDAAVEAALSK 80 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHH-HHCTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHH-----HHHHHHH-HhCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999332 1111111 12457899999999999999998865
Q ss_pred --CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHHhc----C---CCCeEEEecCCcccCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCKNA----N---PQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~---~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++... + ...+||++||...+.
T Consensus 81 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-------- 152 (261)
T 3n74_A 81 FGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR-------- 152 (261)
T ss_dssp HSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS--------
T ss_pred cCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC--------
Confidence 789999999975421 134456678999999988888877432 1 122799999977642
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
+......|+.+|++.+.+++.++.++ |+++++|+||.|.++..... ..... ......+ .....
T Consensus 153 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~------~~~~~-~~~~~~~---~~~~~ 218 (261)
T 3n74_A 153 ----PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTF------MGEDS-EEIRKKF---RDSIP 218 (261)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------------CT
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhh------cccCc-HHHHHHH---hhcCC
Confidence 11345679999999999999999884 89999999999998743211 00000 0000011 11122
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccH
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPV 366 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~ 366 (439)
...+++++|+|++++.++...... ..|+++++.+|..++-
T Consensus 219 ~~~~~~~~dva~~~~~l~s~~~~~----------itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 219 MGRLLKPDDLAEAAAFLCSPQASM----------ITGVALDVDGGRSIGG 258 (261)
T ss_dssp TSSCCCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTTTC--
T ss_pred cCCCcCHHHHHHHHHHHcCCcccC----------cCCcEEEecCCcccCC
Confidence 335789999999999998654432 3458999998876653
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=209.68 Aligned_cols=227 Identities=13% Similarity=0.103 Sum_probs=165.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+. ....++.++.+|++|.++++++++.+
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVER----LEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 11111111 12357899999999999999988865
Q ss_pred ---CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 85 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~---------- 152 (264)
T 3ucx_A 85 AYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNSMVVRH---------- 152 (264)
T ss_dssp HTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECCGGGGC----------
T ss_pred HcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECcchhcc----------
Confidence 78999999987422 22345567899999999999988764 333 3999999977653
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCC---------ChHHHHHHHHHcCCCCceee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPD---------MAYFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~---------~~~~~~~~~~~~g~~~~~~~ 309 (439)
...+...|+.+|++.+.+++.++.+ .|+++++|+||.|+++..... .....+...+..+.
T Consensus 153 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 224 (264)
T 3ucx_A 153 --SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGS------ 224 (264)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTS------
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccC------
Confidence 1134678999999999999999988 489999999999998732100 00011112222222
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
....+.+++|+|++++.++...... ..|+++++.+|..
T Consensus 225 ------p~~r~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~~ 262 (264)
T 3ucx_A 225 ------DLKRLPTEDEVASAILFMASDLASG----------ITGQALDVNCGEY 262 (264)
T ss_dssp ------SSSSCCBHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSS
T ss_pred ------CcccCCCHHHHHHHHHHHcCccccC----------CCCCEEEECCCcc
Confidence 2234778999999999998765432 3458999988763
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=205.04 Aligned_cols=219 Identities=18% Similarity=0.104 Sum_probs=161.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ ......+.. ...+.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE-----EGKAMAAEL-ADAARYVHLDVTQPAQWKAAVDTAVTA 78 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHT-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHh-hcCceEEEecCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999321 111111111 235889999999999999988854
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~----------- 146 (260)
T 1nff_A 79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGR-GSIINISSIEGLAG----------- 146 (260)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEeehhhcCC-----------
Confidence 679999999975432 233456689999999986665554 45553 49999999876532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
..+...|+.+|.+.+.+++.++.+ .|+++++|+||.|+++.... ....... .....+
T Consensus 147 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------------~~~~~~~-------~~~~~~ 206 (260)
T 1nff_A 147 -TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW------------VPEDIFQ-------TALGRA 206 (260)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT------------SCTTCSC-------CSSSSC
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCcccc------------chhhHHh-------CccCCC
Confidence 134578999999999999999887 48999999999999884320 0000000 112247
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.+++|+|++++.++...... ..|++|++.++..
T Consensus 207 ~~~~dvA~~v~~l~s~~~~~----------~~G~~~~v~gG~~ 239 (260)
T 1nff_A 207 AEPVEVSNLVVYLASDESSY----------STGAEFVVDGGTV 239 (260)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred CCHHHHHHHHHHHhCccccC----------CcCCEEEECCCee
Confidence 88999999999998754321 2348999988754
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=205.41 Aligned_cols=230 Identities=15% Similarity=0.158 Sum_probs=162.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh---cCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE---RSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+... ..++.++.+|++|.++++++++.+
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 86 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEG----LEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTAT 86 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 1111111111 357889999999999999988765
Q ss_pred -----CccEEEEcccccCc-c----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGV-R----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~-~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||.... . .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~------- 158 (267)
T 1iy8_A 87 TERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGS-GMVVNTASVGGIRG------- 158 (267)
T ss_dssp HHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTSB-------
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEEcchhhccC-------
Confidence 67999999997543 1 233456789999999977665554 45553 49999999776421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC------CChHHHHHHHHHcCCCCceeec
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP------DMAYFFFTRDILNRKSIPIFES 310 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~------~~~~~~~~~~~~~g~~~~~~~~ 310 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++.... ..........+....
T Consensus 159 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------- 226 (267)
T 1iy8_A 159 -----IGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN------- 226 (267)
T ss_dssp -----CSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC-------
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccC-------
Confidence 1345789999999999999998874 8999999999998863110 000000000111111
Q ss_pred CCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 311 PDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 311 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
....+.+++|+|.+++.++...... ..|+.+++.+|...+
T Consensus 227 -----p~~r~~~~~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~~~~ 266 (267)
T 1iy8_A 227 -----PSKRYGEAPEIAAVVAFLLSDDASY----------VNATVVPIDGGQSAA 266 (267)
T ss_dssp -----TTCSCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTTTTB
T ss_pred -----CCCCCcCHHHHHHHHHHHcCccccC----------CCCCEEEECCCcccC
Confidence 1123788999999999998654321 234899998875443
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-25 Score=207.11 Aligned_cols=225 Identities=10% Similarity=0.025 Sum_probs=163.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC-CCCCCChhHHHHHHHhhh--cCCeEEEEcccCCH----HHHHHh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN-FNDYYDPSLKKARQALLE--RSGIFIVEGDINDM----ALLKKL 169 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~----~~~~~~ 169 (439)
+.+|+||||||+|+||++++++|+++|++|++++| +.+ .......+... ...+.++.+|++|. ++++++
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 84 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG----AAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDI 84 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChH----HHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHH
Confidence 67899999999999999999999999999999998 332 11111111111 34789999999999 999888
Q ss_pred hccc-----CccEEEEcccccCcc----ccc-----------cChhHHHHHHHHHHHHHHHHHHhcCC--C------CeE
Q 013602 170 FDVV-----SFTHVMHLAAQAGVR----YAM-----------QNPNSYVHSNIAGLVSLLEVCKNANP--Q------PAI 221 (439)
Q Consensus 170 ~~~~-----~~d~Vi~~Ag~~~~~----~~~-----------~~~~~~~~~Nv~gt~~ll~~~~~~~~--~------~~~ 221 (439)
++.+ ++|+||||||..... .+. ++++..+++|+.|+.++++++.+... . ++|
T Consensus 85 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~i 164 (276)
T 1mxh_A 85 IDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSV 164 (276)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEE
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEE
Confidence 8754 679999999975432 122 45567999999999999999876421 1 499
Q ss_pred EEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHH
Q 013602 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRD 298 (439)
Q Consensus 222 V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~ 298 (439)
|++||...+.. ..+...|+.+|++.+.+++.++.++ |+++++|+||.|++| .. ....+...
T Consensus 165 v~isS~~~~~~------------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~---~~~~~~~~ 228 (276)
T 1mxh_A 165 VNLCDAMTDLP------------LPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PA---MPQETQEE 228 (276)
T ss_dssp EEECCGGGGSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SS---SCHHHHHH
T ss_pred EEECchhhcCC------------CCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-cc---CCHHHHHH
Confidence 99999876531 1345789999999999999998875 899999999999998 32 11222233
Q ss_pred HHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 299 ILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+.... +. .+++.+++|+|++++.++...... ..|+++++.+|.
T Consensus 229 ~~~~~--p~---------~r~~~~~~dva~~v~~l~s~~~~~----------~tG~~~~vdgG~ 271 (276)
T 1mxh_A 229 YRRKV--PL---------GQSEASAAQIADAIAFLVSKDAGY----------ITGTTLKVDGGL 271 (276)
T ss_dssp HHTTC--TT---------TSCCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred HHhcC--CC---------CCCCCCHHHHHHHHHHHhCccccC----------ccCcEEEECCch
Confidence 33221 11 112788999999999998754421 234899998764
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=203.86 Aligned_cols=229 Identities=13% Similarity=0.073 Sum_probs=162.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ .....+.. ...++.++.+|++|.++++++++.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~------~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 75 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP------APALAEIARHGVKAVHHPADLSDVAQIEALFALAER 75 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC------HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch------HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999553 11111111 1346888999999999999998854
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++.+++ ++.+. ++||++||...+..
T Consensus 76 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~---------- 144 (255)
T 2q2v_A 76 EFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNW-GRIINIASVHGLVG---------- 144 (255)
T ss_dssp HHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTSC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEcCchhccC----------
Confidence 679999999975432 234456689999999877766655 45553 49999999876532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHH--HHHcCCCC----ceeecCCC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTR--DILNRKSI----PIFESPDH 313 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~--~~~~g~~~----~~~~~~~~ 313 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|++|... .+.. ... +... ..+. ..
T Consensus 145 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~------~~~~~~~~~-~~~~~~~~~~~~--~~ 213 (255)
T 2q2v_A 145 --STGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQ------KQIDDRAAN-GGDPLQAQHDLL--AE 213 (255)
T ss_dssp --CTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHH------HHHHHHHHH-TCCHHHHHHHHH--TT
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchh------hhccccccc-ccchHHHHHHHH--hc
Confidence 1345789999999999999999884 799999999999987321 1110 000 0000 0000 01
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
......+++++|+|++++.++...... ..|+.|++.++..
T Consensus 214 ~~p~~~~~~~~dvA~~~~~l~s~~~~~----------~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 214 KQPSLAFVTPEHLGELVLFLCSEAGSQ----------VRGAAWNVDGGWL 253 (255)
T ss_dssp TCTTCCCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTGG
T ss_pred cCCCCCCcCHHHHHHHHHHHhCCccCC----------CCCCEEEECCCcc
Confidence 112235899999999999998754421 2348999988743
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-25 Score=204.65 Aligned_cols=224 Identities=16% Similarity=0.125 Sum_probs=161.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ ... +.....++.++.+|++|.++++++++.. ++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~-------~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 75 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES-------KLQ-ELEKYPGIQTRVLDVTKKKQIDQFANEVERL 75 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH-------HHG-GGGGSTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH-------HHH-HHHhccCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 67899999999999999999999999999999999321 111 1111237889999999999999887765 67
Q ss_pred cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 176 d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p 247 (439)
|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+... + .+
T Consensus 76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~----------~-~~ 143 (246)
T 2ag5_A 76 DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKS-GNIINMSSVASSVKG----------V-VN 143 (246)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCSBTTTBC----------C-TT
T ss_pred CEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEechHhCcCC----------C-CC
Confidence 9999999975432 2234556789999999999988875 3343 499999997764311 0 14
Q ss_pred CChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 248 ASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
...|+.+|.+.+.+++.++.++ |+++++|+||.|++|..... .........+....+ ...+
T Consensus 144 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 211 (246)
T 2ag5_A 144 RCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQK------------TGRF 211 (246)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCT------------TSSC
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCC------------CCCC
Confidence 5789999999999999998875 89999999999998732100 000111111221111 1136
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+++|+|++++.++...... ..|+++++.+|.
T Consensus 212 ~~~~dvA~~v~~l~s~~~~~----------~tG~~i~vdgG~ 243 (246)
T 2ag5_A 212 ATAEEIAMLCVYLASDESAY----------VTGNPVIIDGGW 243 (246)
T ss_dssp EEHHHHHHHHHHHHSGGGTT----------CCSCEEEECTTG
T ss_pred CCHHHHHHHHHHHhCccccC----------CCCCEEEECCCc
Confidence 88999999999998755432 234899988764
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=204.80 Aligned_cols=241 Identities=15% Similarity=0.086 Sum_probs=168.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCC-----------hhHHHHHHHhh--hcCCeEEEEcccCCH
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD-----------PSLKKARQALL--ERSGIFIVEGDINDM 163 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~~~--~~~~v~~~~~Dl~d~ 163 (439)
+++|+||||||+|+||++++++|+++|++|++++|+..... ........+.. ....+.++.+|++|.
T Consensus 9 l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 88 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY 88 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence 67899999999999999999999999999999999632111 11111111111 235789999999999
Q ss_pred HHHHHhhccc-----CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcc
Q 013602 164 ALLKKLFDVV-----SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSV 229 (439)
Q Consensus 164 ~~~~~~~~~~-----~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v 229 (439)
++++++++.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++.. .+...+||++||...
T Consensus 89 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 168 (286)
T 3uve_A 89 DALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGG 168 (286)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhh
Confidence 9999988764 689999999975432 23455678999999999999888753 232239999999776
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCc
Q 013602 230 YGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIP 306 (439)
Q Consensus 230 ~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~ 306 (439)
+.. ......|+.+|.+.+.+++.++.+ .|+++++|+||.|.++....... ...........
T Consensus 169 ~~~------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~----~~~~~~~~~~~ 232 (286)
T 3uve_A 169 LKA------------YPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGT----FKMFRPDLENP 232 (286)
T ss_dssp TSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHH----HHHHCTTSSSC
T ss_pred ccC------------CCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccch----hhhcccccccc
Confidence 531 134578999999999999999988 48999999999999875431110 00000000000
Q ss_pred ee------ecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 307 IF------ESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 307 ~~------~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
.. ........ ..+.+++|+|.+++.++...... ..|+++++.+|..+
T Consensus 233 ~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~~a~~----------itG~~i~vdGG~~l 285 (286)
T 3uve_A 233 GPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASDEARY----------ITGVTLPIDAGSCL 285 (286)
T ss_dssp CHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred chhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCccccC----------CcCCEEeECCcccc
Confidence 00 00001111 45789999999999998755432 34589999887543
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-25 Score=204.46 Aligned_cols=224 Identities=12% Similarity=0.108 Sum_probs=153.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEE-CCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLD-NFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++ |+.. .......... ...++.++.+|++|.++++++++.+
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPAST----SLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAM 78 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCS----HHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHH----HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999999999999995 4322 1111111111 2346899999999999999988754
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCC-cccCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSS-SVYGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~-~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+. ++||++||. +.|+.
T Consensus 79 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~-------- 149 (247)
T 2hq1_A 79 DAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKS-GKIINITSIAGIIGN-------- 149 (247)
T ss_dssp HHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTC-EEEEEECC---------------
T ss_pred HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcChhhccCC--------
Confidence 679999999975422 24556778999999998888887653 443 499999996 44431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
.+...|+.+|.+.|.+++.++.++ |+++++++||.+.++.... ....+...+..+.+ .
T Consensus 150 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~------------~ 210 (247)
T 2hq1_A 150 -----AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV--LPDKVKEMYLNNIP------------L 210 (247)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--SCHHHHHHHHTTST------------T
T ss_pred -----CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh--cchHHHHHHHhhCC------------C
Confidence 345789999999999999998875 8999999999998763211 01112222222211 1
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+++++|+|++++.++...... ..|++|++.+|.
T Consensus 211 ~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~ 245 (247)
T 2hq1_A 211 KRFGTPEEVANVVGFLASDDSNY----------ITGQVINIDGGL 245 (247)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred CCCCCHHHHHHHHHHHcCccccc----------ccCcEEEeCCCc
Confidence 24789999999999988755321 234899998764
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-25 Score=207.63 Aligned_cols=229 Identities=13% Similarity=0.079 Sum_probs=167.6
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+.+..+ ....+. .....+.++.+|++|.++++++++.+
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 104 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQ----VVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMT 104 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGH----HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999554221 111111 12347899999999999999999865
Q ss_pred ----CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||+..... +.++++..+++|+.|+.++++++.+ .+...+||++||...+...
T Consensus 105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~-------- 176 (276)
T 3r1i_A 105 GELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN-------- 176 (276)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC--------
Confidence 7899999999865422 3445567889999999998888743 3322489999997654211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
...+...|+.||.+.+.+++.++.+ .|+++++|+||.|.++..... ......+....+. .
T Consensus 177 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~---~~~~~~~~~~~p~------------~ 239 (276)
T 3r1i_A 177 --IPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL---ADYHALWEPKIPL------------G 239 (276)
T ss_dssp --CSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG---GGGHHHHGGGSTT------------S
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc---hHHHHHHHhcCCC------------C
Confidence 1124578999999999999999988 489999999999998754311 1112222222211 2
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.+..++|+|.+++.++...... ..|+++++.+|..
T Consensus 240 r~~~pedvA~~v~fL~s~~~~~----------itG~~i~vdGG~~ 274 (276)
T 3r1i_A 240 RMGRPEELTGLYLYLASAASSY----------MTGSDIVIDGGYT 274 (276)
T ss_dssp SCBCGGGSHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred CCcCHHHHHHHHHHHcCccccC----------ccCcEEEECcCcc
Confidence 3677899999999998765432 3458999987653
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=211.26 Aligned_cols=227 Identities=13% Similarity=0.052 Sum_probs=165.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ........ .....+.++.+|++|.++++++++.+
T Consensus 26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAG----AEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLK 101 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 11111111 12347889999999999999988865
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||+.... .+.++++..+++|+.|+.++++++. +.+ ..+||++||...+..
T Consensus 102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~---------- 170 (270)
T 3ftp_A 102 EFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR-GGRIVNITSVVGSAG---------- 170 (270)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhCCC----------
Confidence 689999999975432 2345567899999999999998874 233 239999999665421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++..... .......+....+ ...
T Consensus 171 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~p------------~~r 234 (270)
T 3ftp_A 171 --NPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGL--PQEQQTALKTQIP------------LGR 234 (270)
T ss_dssp --CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHS--CHHHHHHHHTTCT------------TCS
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhc--CHHHHHHHHhcCC------------CCC
Confidence 1346789999999999999999884 89999999999987622100 0111122222221 223
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+.+++|+|++++.++...... ..|+++++.+|..+
T Consensus 235 ~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 235 LGSPEDIAHAVAFLASPQAGY----------ITGTTLHVNGGMFM 269 (270)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSSC
T ss_pred CCCHHHHHHHHHHHhCCCcCC----------ccCcEEEECCCccc
Confidence 678999999999998654432 34589999887654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=205.37 Aligned_cols=227 Identities=14% Similarity=0.090 Sum_probs=162.9
Q ss_pred CCCCEEEEECCCC-hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAG-FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG-~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+||||||+| +||++++++|+++|++|++++|+.+. ......+. ....++.++.+|++|.++++++++.+
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERR----LGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHH----HHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHH
Confidence 6789999999997 79999999999999999999994321 11111111 12357999999999999999998876
Q ss_pred -----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++... +..++||++||...+.
T Consensus 96 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 166 (266)
T 3o38_A 96 VEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR--------- 166 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC---------
T ss_pred HHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC---------
Confidence 789999999975432 234456689999999999999887643 2234899999977642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
...+...|+.+|++.+.+++.++.+ .|+++++|+||.|.++...... .......+. .....
T Consensus 167 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~------------~~~~~ 230 (266)
T 3o38_A 167 ---AQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTS-SSELLDRLA------------SDEAF 230 (266)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------------------------------CCTT
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccC-cHHHHHHHH------------hcCCc
Confidence 1235678999999999999999887 4899999999999887432110 001111111 12223
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 231 ~r~~~~~dva~~i~~l~s~~~~~----------~tG~~i~vdgG~ 265 (266)
T 3o38_A 231 GRAAEPWEVAATIAFLASDYSSY----------MTGEVVSVSSQR 265 (266)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSCC
T ss_pred CCCCCHHHHHHHHHHHcCccccC----------ccCCEEEEcCCc
Confidence 35788999999999998765432 345899998763
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=204.81 Aligned_cols=215 Identities=18% Similarity=0.137 Sum_probs=163.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----C
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----S 174 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----~ 174 (439)
+|+||||||+|+||++++++|+++|++|++++|+.. ...+.++.+|++|.++++++++.+ +
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~---------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 66 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE---------------GEDLIYVEGDVTREEDVRRAVARAQEEAP 66 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC---------------SSSSEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc---------------ccceEEEeCCCCCHHHHHHHHHHHHhhCC
Confidence 579999999999999999999999999999999543 124688999999999999998854 6
Q ss_pred ccEEEEcccccCcccc----cc----ChhHHHHHHHHHHHHHHHHHHhcCC---------CCeEEEecCCcccCCCCCCC
Q 013602 175 FTHVMHLAAQAGVRYA----MQ----NPNSYVHSNIAGLVSLLEVCKNANP---------QPAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~----~~----~~~~~~~~Nv~gt~~ll~~~~~~~~---------~~~~V~~SS~~v~g~~~~~~ 237 (439)
+|+||||||....... .+ +++..+++|+.++.++++++.+... .++||++||...+..
T Consensus 67 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----- 141 (242)
T 1uay_A 67 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG----- 141 (242)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC-----
T ss_pred ceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC-----
Confidence 7999999997543211 11 5678899999999999998865421 129999999887642
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCC
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
..+...|+.+|.+.+.+++.++.++ |+++++||||.|+++..... ...+...+..+.+..
T Consensus 142 -------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~~-------- 204 (242)
T 1uay_A 142 -------QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL--PEKAKASLAAQVPFP-------- 204 (242)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS--CHHHHHHHHTTCCSS--------
T ss_pred -------CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhcc--chhHHHHHHhhCCCc--------
Confidence 1346789999999999999998875 89999999999998743211 112223333332210
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
..+++++|+|++++.++.. .. ..|+.|++.+|..++
T Consensus 205 ---~~~~~~~dva~~~~~l~~~-~~-----------~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 205 ---PRLGRPEEYAALVLHILEN-PM-----------LNGEVVRLDGALRMA 240 (242)
T ss_dssp ---CSCCCHHHHHHHHHHHHHC-TT-----------CCSCEEEESTTCCCC
T ss_pred ---ccCCCHHHHHHHHHHHhcC-CC-----------CCCcEEEEcCCeecC
Confidence 2378899999999999876 22 234899998876543
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=211.51 Aligned_cols=231 Identities=11% Similarity=0.056 Sum_probs=167.1
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.++++++++.+
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSR----VAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLD 98 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHH----HHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999983321 111111111 2357899999999999999998865
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||+.... .+.++++..+++|+.|+.++++++.+ .+. ++||++||...+.
T Consensus 99 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iV~isS~~~~~---------- 167 (271)
T 4ibo_A 99 EQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGY-GKIVNIGSLTSEL---------- 167 (271)
T ss_dssp HHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS----------
T ss_pred HHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEccHHhCC----------
Confidence 689999999975432 23455678999999999998777643 343 3999999976532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
...+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++..........+...+..+.+. .
T Consensus 168 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------~ 233 (271)
T 4ibo_A 168 --ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPA------------K 233 (271)
T ss_dssp --BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHSTT------------C
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCCC------------C
Confidence 1135678999999999999999888 4899999999999987432000001122222222222 2
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
.+..++|+|.+++.++...... ..|+++++.+|...+
T Consensus 234 r~~~pedva~~v~~L~s~~~~~----------itG~~i~vdGG~~~~ 270 (271)
T 4ibo_A 234 RWGKPQELVGTAVFLSASASDY----------VNGQIIYVDGGMLSV 270 (271)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESTTGGGB
T ss_pred CCcCHHHHHHHHHHHhCccccC----------CCCcEEEECCCeecc
Confidence 3567899999999988765432 345899998876543
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=208.69 Aligned_cols=221 Identities=19% Similarity=0.112 Sum_probs=163.6
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.+.+|+||||||+|+||++++++|+++|++|++++|+..... ....+.+|++|.++++++++.+
T Consensus 25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~--------------~~~~~~~Dv~~~~~~~~~~~~~~~ 90 (266)
T 3uxy_A 25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA--------------ADLHLPGDLREAAYADGLPGAVAA 90 (266)
T ss_dssp -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC--------------CSEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--------------hhhccCcCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999543211 2244589999999998888754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 91 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~----------- 158 (266)
T 3uxy_A 91 GLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGG-GAIVNVASCWGLR----------- 158 (266)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCSBTTB-----------
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECCHHhCC-----------
Confidence 689999999986532 234556688999999999999987 44443 3999999977642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC-----CChHHHHHHHHHcCCCCceeecCCCC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP-----DMAYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
...+...|+.+|++.+.+++.++.++ |+++++|+||.|+++.... ..........+....
T Consensus 159 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~----------- 226 (266)
T 3uxy_A 159 -PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTV----------- 226 (266)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTS-----------
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcC-----------
Confidence 11346789999999999999999885 8999999999998863110 000001112222221
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
....+.+++|+|++++.++...... ..|+++++.+|..++
T Consensus 227 -p~~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~~s 266 (266)
T 3uxy_A 227 -PLGRIAEPEDIADVVLFLASDAARY----------LCGSLVEVNGGKAVA 266 (266)
T ss_dssp -TTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTCCCC
T ss_pred -CCCCCcCHHHHHHHHHHHhCchhcC----------CcCCEEEECcCEeCC
Confidence 2234788999999999998765432 345899998886543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-25 Score=204.10 Aligned_cols=223 Identities=13% Similarity=0.051 Sum_probs=161.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+.. ....+.++.+|++|.++++++++.+
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGER----AKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIY 80 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHH----HHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999993321 111111111 1347889999999999999998754
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcc-cCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSV-YGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v-~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||... ++.
T Consensus 81 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~-------- 151 (248)
T 2pnf_A 81 NLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRW-GRIVNISSVVGFTGN-------- 151 (248)
T ss_dssp HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTC-EEEEEECCHHHHHCC--------
T ss_pred HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEEccHHhcCCC--------
Confidence 679999999975432 233456689999999997776655 34453 39999999654 331
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
.+...|+.+|.+.+.+++.+++++ |+++++++||.++++..... ...+...+....+ .
T Consensus 152 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~ 212 (248)
T 2pnf_A 152 -----VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVL--SEEIKQKYKEQIP------------L 212 (248)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS--CHHHHHHHHHTCT------------T
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhc--cHHHHHHHHhcCC------------C
Confidence 345789999999999999998874 89999999999998754311 1112222222211 1
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+++++|+|++++.++...... ..|++|++.++
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg 246 (248)
T 2pnf_A 213 GRFGSPEEVANVVLFLCSELASY----------ITGEVIHVNGG 246 (248)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred CCccCHHHHHHHHHHHhCchhhc----------CCCcEEEeCCC
Confidence 23789999999999998754321 23489999876
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-25 Score=204.39 Aligned_cols=226 Identities=16% Similarity=0.062 Sum_probs=160.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ ......+.. ..++.++.+|++|.++++++++.+
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA-----AGQQLAAEL-GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH-----HHHHHHHHH-CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHc-CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998321 111111111 357899999999999999888765
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++.+++ ++.+ ++||++||...+..
T Consensus 78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~----------- 144 (253)
T 1hxh_A 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASVSSWLP----------- 144 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCGGGTSC-----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcchhhcCC-----------
Confidence 689999999975432 233456688999999877666654 4444 49999999876531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh-----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCce-eecCCCCcce
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY-----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPI-FESPDHGTVA 317 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~-----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~ 317 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++... .......... +.........
T Consensus 145 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~----------~~~~~~~~~~~~~~~~~~~p~ 213 (253)
T 1hxh_A 145 -IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQ----------ASLPKGVSKEMVLHDPKLNRA 213 (253)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHH----------HHSCTTCCHHHHBCBTTTBTT
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhh----------hccchhhhHHHHhhhhccCcc
Confidence 1345789999999999999998874 899999999999987311 1000000000 0000001112
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+.+++|+|++++.++...... ..|+.+++.+|.
T Consensus 214 ~~~~~~~dvA~~~~~l~s~~~~~----------~tG~~~~vdgG~ 248 (253)
T 1hxh_A 214 GRAYMPERIAQLVLFLASDESSV----------MSGSELHADNSI 248 (253)
T ss_dssp CCEECHHHHHHHHHHHHSGGGTT----------CCSCEEEESSSC
T ss_pred CCCCCHHHHHHHHHHHcCccccC----------CCCcEEEECCCc
Confidence 34789999999999998765422 234899988764
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=212.99 Aligned_cols=241 Identities=15% Similarity=0.109 Sum_probs=170.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh-cC---CeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-RS---GIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~---~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+... .. ++.++.+|++|.++++++++.
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 99 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDR----LEETKQQILKAGVPAEKINAVVADVTEASGQDDIINT 99 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 1111111111 12 688999999999999998875
Q ss_pred c-----CccEEEEcccccCcc------ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR------YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~------~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~ 237 (439)
+ ++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+ ++||++||...+...
T Consensus 100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS~~~~~~~---- 173 (297)
T 1xhl_A 100 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGPQA---- 173 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGSSSC----
T ss_pred HHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcCchhccCC----
Confidence 4 679999999975322 23345668999999999998888754 33 499999998765321
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCC--Ch-----HHHHHHHHHcCCCCce
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPD--MA-----YFFFTRDILNRKSIPI 307 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~--~~-----~~~~~~~~~~g~~~~~ 307 (439)
..+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++..... .. ...+...+. ...+
T Consensus 174 -------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~--~~~p- 243 (297)
T 1xhl_A 174 -------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRK--ECIP- 243 (297)
T ss_dssp -------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCT--TTCT-
T ss_pred -------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHH--hcCC-
Confidence 024568999999999999999876 489999999999998732100 00 000111111 1111
Q ss_pred eecCCCCcceeeeeeHHHHHHHHHHHHhhc-hhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHH
Q 013602 308 FESPDHGTVARDFTYIDDIVKGCLAALDTA-EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERL 376 (439)
Q Consensus 308 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~ 376 (439)
...+..++|+|++++.++... ... ..|+++++.+|..+...+....+.+.
T Consensus 244 ---------~~r~~~pedvA~~v~~l~s~~~~~~----------itG~~i~vdGG~~~~~~~~~~~~~~~ 294 (297)
T 1xhl_A 244 ---------VGHCGKPEEIANIIVFLADRNLSSY----------IIGQSIVADGGSTLVMGMQTHDLMSV 294 (297)
T ss_dssp ---------TSSCBCHHHHHHHHHHHHCHHHHTT----------CCSCEEEESTTGGGCCGGGGSCHHHH
T ss_pred ---------CCCCcCHHHHHHHHHHHhCCcccCC----------ccCcEEEECCCccccccccccchhhh
Confidence 123788999999999998765 321 23489999988776666655544443
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=208.65 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=157.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.++|+||||||+|+||++++++|+++|++|+++++... .......... .....+.++.+|++|.++++++++.+
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANR---EAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDR 100 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCh---hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999988744221 1111111111 12357889999999999999998866
Q ss_pred ---CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCCcccCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCKNA------NPQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~~~------~~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. +..++||++||...+..
T Consensus 101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 173 (272)
T 4e3z_A 101 QFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILG------- 173 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHC-------
T ss_pred hCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccC-------
Confidence 789999999985431 134556789999999999998887543 12348999999765421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.......|+.+|++.+.+++.++.++ |+++++|+||.|+++..... ........+..+. .
T Consensus 174 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~~------------~ 236 (272)
T 4e3z_A 174 ----SATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASG-GLPDRAREMAPSV------------P 236 (272)
T ss_dssp ----CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------------CC------------T
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCccccc-CChHHHHHHhhcC------------C
Confidence 10234679999999999999998885 89999999999998754311 0111111111111 1
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
...+.+++|+|++++.++...... ..|++|++.+|
T Consensus 237 ~~~~~~~edvA~~i~~l~s~~~~~----------~tG~~i~vdgG 271 (272)
T 4e3z_A 237 MQRAGMPEEVADAILYLLSPSASY----------VTGSILNVSGG 271 (272)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred cCCCcCHHHHHHHHHHHhCCcccc----------ccCCEEeecCC
Confidence 223567999999999998755432 34589999876
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-25 Score=206.97 Aligned_cols=231 Identities=14% Similarity=0.088 Sum_probs=166.3
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.+++|++|||||+|+||++++++|+++|++|+++++.... .......+. ....++.++.+|++|.++++++++.+
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 91 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTK---DAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAV 91 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4788999999999999999999999999999998873321 111111111 12357899999999999999998865
Q ss_pred ----CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||...... +.++++..+++|+.|+.++++++.+... ..+||++||..... ..
T Consensus 92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 160 (270)
T 3is3_A 92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD-----------FS 160 (270)
T ss_dssp HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT-----------CC
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc-----------CC
Confidence 7899999999864322 3455678999999999999999876532 23999999966211 11
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC----------CChHHHHHHHHHcCCCCceeecC
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP----------DMAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++.... ..........+....+
T Consensus 161 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------- 233 (270)
T 3is3_A 161 VPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASP------- 233 (270)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHST-------
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCC-------
Confidence 1356789999999999999999884 8999999999999874210 0001111111111111
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
...+.+++|+|.+++.++...... ..|+++++.+|.
T Consensus 234 -----~~r~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 269 (270)
T 3is3_A 234 -----LHRNGWPQDVANVVGFLVSKEGEW----------VNGKVLTLDGGA 269 (270)
T ss_dssp -----TCSCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTC
T ss_pred -----CCCCCCHHHHHHHHHHHcCCccCC----------ccCcEEEeCCCC
Confidence 123577999999999998755432 345899998763
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=205.16 Aligned_cols=230 Identities=10% Similarity=-0.016 Sum_probs=168.7
Q ss_pred ccCCCCEEEEECCCCh--HHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 95 RARNGISVLVTGAAGF--VGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 95 ~~~~~~~VlItGatG~--IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
..+++|+||||||+|+ ||.+++++|+++|++|++++|+. ..............+.++.+|++|.++++++++.
T Consensus 22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 96 (280)
T 3nrc_A 22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-----FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVE 96 (280)
T ss_dssp CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-----CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-----HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHH
Confidence 3467899999999954 99999999999999999999954 1111111111234689999999999999999887
Q ss_pred c-----CccEEEEcccccCcc---------ccccChhHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR---------YAMQNPNSYVHSNIAGLVSLLEVCKNAN--PQPAIVWASSSSVYGLNTKV 236 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~---------~~~~~~~~~~~~Nv~gt~~ll~~~~~~~--~~~~~V~~SS~~v~g~~~~~ 236 (439)
+ ++|+||||||..... .+.+++...+++|+.++.++++++.... ...+||++||...+.
T Consensus 97 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~----- 171 (280)
T 3nrc_A 97 LGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK----- 171 (280)
T ss_dssp HHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS-----
T ss_pred HHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc-----
Confidence 5 689999999986431 3344566799999999999999886431 134999999977643
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCC
Q 013602 237 PFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 237 ~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
...+...|+.+|++.+.+++.++.+ .|+++++|+||.|.++..........+........+..
T Consensus 172 -------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~------- 237 (280)
T 3nrc_A 172 -------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPLK------- 237 (280)
T ss_dssp -------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHSTTC-------
T ss_pred -------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCCCC-------
Confidence 1134678999999999999999887 48999999999999875432222223333333322221
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.+..++|+|++++.++...... ..|+++++.+|..
T Consensus 238 -----~~~~pedvA~~v~~l~s~~~~~----------~tG~~i~vdgG~~ 272 (280)
T 3nrc_A 238 -----KNVDIMEVGNTVAFLCSDMATG----------ITGEVVHVDAGYH 272 (280)
T ss_dssp -----SCCCHHHHHHHHHHTTSGGGTT----------CCSCEEEESTTGG
T ss_pred -----CCCCHHHHHHHHHHHhCcccCC----------cCCcEEEECCCcc
Confidence 2567899999999998755432 3458999988754
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-25 Score=205.71 Aligned_cols=220 Identities=16% Similarity=0.125 Sum_probs=161.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+. ..++.++.+|++|.++++++++.+
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 71 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG--------------EAKYDHIECDVTNPDQVKASIDHIFKE 71 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC--------------SCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc--------------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999995542 246889999999999999988764
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. + .++||++||...+..
T Consensus 72 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~----------- 139 (264)
T 2dtx_A 72 YGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSR-DPSIVNISSVQASII----------- 139 (264)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SCEEEEECCGGGTSC-----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECCchhccC-----------
Confidence 679999999975432 234456789999999998888887542 3 349999999876531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHhC--CcEEEEeeccccCCCCCCCChHHHHHHHHHcCCC------CceeecCCCCc
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIYG--LSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKS------IPIFESPDHGT 315 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~g--i~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~ 315 (439)
..+...|+.+|.+.+.+++.++.+++ +++++|+||.|.++... .+......... ...+. ...
T Consensus 140 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~ 209 (264)
T 2dtx_A 140 -TKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVR------KAAELEVGSDPMRIEKKISEWG---HEH 209 (264)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHH------HHHHHHHCSCHHHHHHHHHHHH---HHS
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchh------hhhhcccccCchhhHHHHHHHH---hcC
Confidence 13467899999999999999998865 99999999999875211 11000000000 00000 001
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
....+++++|+|++++.++...... ..|+++++.++.
T Consensus 210 p~~~~~~p~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~ 246 (264)
T 2dtx_A 210 PMQRIGKPQEVASAVAFLASREASF----------ITGTCLYVDGGL 246 (264)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred CCCCCcCHHHHHHHHHHHhCchhcC----------CCCcEEEECCCc
Confidence 1124789999999999998754421 234899988764
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=203.38 Aligned_cols=231 Identities=10% Similarity=0.040 Sum_probs=168.8
Q ss_pred CCCCEEEEECCCCh--HHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGF--VGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~--IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+|+ ||.+++++|+++|++|++++|+... ..............++.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERL--EKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG--HHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHH--HHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999976 9999999999999999999985321 000011111112237999999999999999998865
Q ss_pred ----CccEEEEcccccCc--------cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV--------RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||.... ..+.+++...+++|+.++.++++++..... ..+||++||...+.
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--------- 153 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL--------- 153 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS---------
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc---------
Confidence 68999999997541 122344567899999999999999976532 23999999977642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
.......|+.+|++.+.+++.++.++ |+++++|+||.|.++..........+...+....+..
T Consensus 154 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~----------- 219 (266)
T 3oig_A 154 ---VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLR----------- 219 (266)
T ss_dssp ---CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTS-----------
T ss_pred ---cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcCCCC-----------
Confidence 11346789999999999999998885 8999999999999875432222223333333332221
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.+..++|+|++++.++...... ..|+++++.+|-.
T Consensus 220 -~~~~p~dva~~v~~l~s~~~~~----------~tG~~i~vdGG~~ 254 (266)
T 3oig_A 220 -RTTTPEEVGDTAAFLFSDMSRG----------ITGENLHVDSGFH 254 (266)
T ss_dssp -SCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred -CCCCHHHHHHHHHHHcCCchhc----------CcCCEEEECCCeE
Confidence 2567899999999999865432 3458999988754
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-25 Score=207.53 Aligned_cols=227 Identities=14% Similarity=0.079 Sum_probs=162.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+ .......+.. ....+.++.+|++|.++++++++.+
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAK----NVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVE 97 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999432 1111111111 2357899999999999999988765
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh------cCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN------ANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~------~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+. ++||++||...+.
T Consensus 98 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~-g~iV~isS~~~~~--------- 167 (279)
T 3sju_A 98 RFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGW-GRIVNIASTGGKQ--------- 167 (279)
T ss_dssp HHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTC-EEEEEECCGGGTS---------
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCC-cEEEEECChhhcc---------
Confidence 789999999985432 23344567899999999999998754 332 3999999977642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCC---------CChHHHHHHHHHcCCCCcee
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRP---------DMAYFFFTRDILNRKSIPIF 308 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~---------~~~~~~~~~~~~~g~~~~~~ 308 (439)
...+...|+.+|++.+.+++.++.+ .|+++++|+||.|.++.... ..........+....+
T Consensus 168 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---- 240 (279)
T 3sju_A 168 ---GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIP---- 240 (279)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTCT----
T ss_pred ---CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcCC----
Confidence 1134578999999999999999988 48999999999998762110 0001112222222221
Q ss_pred ecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 309 ESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 309 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
...+.+++|+|.+++.++...... ..|+++++.+|.
T Consensus 241 --------~~r~~~pedvA~~v~~L~s~~a~~----------itG~~i~vdGG~ 276 (279)
T 3sju_A 241 --------LGRYSTPEEVAGLVGYLVTDAAAS----------ITAQALNVCGGL 276 (279)
T ss_dssp --------TSSCBCHHHHHHHHHHHTSSGGGG----------CCSCEEEESTTC
T ss_pred --------CCCCCCHHHHHHHHHHHhCccccC----------cCCcEEEECCCc
Confidence 223678999999999998765432 345899998764
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=211.22 Aligned_cols=231 Identities=10% Similarity=0.026 Sum_probs=167.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+. ....++.++.+|++|.++++++++.+
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 99 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPR----VLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQA 99 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHH----HHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 3688999999999999999999999999999999994321 11111111 12357899999999999999988865
Q ss_pred -----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.. .+ ..+||++||...+..
T Consensus 100 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~-------- 170 (277)
T 4fc7_A 100 LKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDH-GGVIVNITATLGNRG-------- 170 (277)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCSHHHHT--------
T ss_pred HHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhCCC--------
Confidence 789999999964332 23455678999999999999998742 33 239999999765421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC-ChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD-MAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
......|+.+|.+.+.+++.++.++ |+++++|+||.|+++..... ..............+..
T Consensus 171 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~---------- 236 (277)
T 4fc7_A 171 ----QALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQ---------- 236 (277)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTSTTS----------
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCCCC----------
Confidence 1345789999999999999999885 89999999999998631000 00011222222222221
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
.+..++|+|.+++.++...... ..|+++++.+|..++
T Consensus 237 --r~~~p~dvA~~v~fL~s~~~~~----------itG~~i~vdGG~~~~ 273 (277)
T 4fc7_A 237 --RLGNKTEIAHSVLYLASPLASY----------VTGAVLVADGGAWLT 273 (277)
T ss_dssp --SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTHHHH
T ss_pred --CCcCHHHHHHHHHHHcCCccCC----------cCCCEEEECCCcccC
Confidence 2567999999999998755432 345899998876544
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=203.94 Aligned_cols=233 Identities=12% Similarity=0.052 Sum_probs=163.0
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.+++|+||||||+|+||++++++|+++|++|+++++... ........+. .....+.++.+|++|.++++++++.+
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAA---EGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAA 81 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSC---HHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999965332 1111111111 12357899999999999999998865
Q ss_pred ----CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCccc-CCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVY-GLNTKVPFSEKD 242 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~-g~~~~~~~~e~~ 242 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++..... ..+||++||...+ .
T Consensus 82 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 150 (259)
T 3edm_A 82 DKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG----------- 150 (259)
T ss_dssp HHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC-----------
T ss_pred HHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC-----------
Confidence 68999999997522 123344568999999999999999976531 1389999997765 2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHhC--CcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIYG--LSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~g--i~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
...+...|+.+|++.+.+++.++.+++ +++++|+||.|.++..... ........+ ........+
T Consensus 151 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~----------~~~~~~~~~---~~~~p~~r~ 216 (259)
T 3edm_A 151 -GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTF----------TKPEVRERV---AGATSLKRE 216 (259)
T ss_dssp -CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC-----------------------------------CC
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccc----------cChHHHHHH---HhcCCCCCC
Confidence 113457899999999999999999864 9999999999988743210 000001111 112233457
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccH
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPV 366 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~ 366 (439)
.+++|+|++++.++...... ..|++|++.+|...+.
T Consensus 217 ~~pedva~~v~~L~s~~~~~----------itG~~i~vdGg~~~~~ 252 (259)
T 3edm_A 217 GSSEDVAGLVAFLASDDAAY----------VTGACYDINGGVLFSE 252 (259)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESBCSSBC-
T ss_pred cCHHHHHHHHHHHcCccccC----------ccCCEEEECCCcCCCC
Confidence 78999999999998765432 3458999988765544
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=203.74 Aligned_cols=228 Identities=16% Similarity=0.120 Sum_probs=162.3
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.+.+|+||||||+|+||++++++|+++|++|++++|+.+. ......+. .....+.++.+|++|.++++++++.+
T Consensus 18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 93 (267)
T 1vl8_A 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEE----ASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAV 93 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 3778999999999999999999999999999999994321 11111111 11346888999999999999988754
Q ss_pred -----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcc-cCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSV-YGLNTKVPFS 239 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v-~g~~~~~~~~ 239 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ .++||++||..+ +.
T Consensus 94 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~-------- 164 (267)
T 1vl8_A 94 KEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGSLTVEEV-------- 164 (267)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECCGGGTCC--------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECCcchhcc--------
Confidence 679999999975432 2234456789999999999988774 333 349999999763 21
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
...+...|+.+|++.+.+++.++.++ |+++++|+||.|.++.......-......+....+ .
T Consensus 165 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p--~--------- 229 (267)
T 1vl8_A 165 ----TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIP--L--------- 229 (267)
T ss_dssp ----CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCT--T---------
T ss_pred ----CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccChHHHHHHHhhCC--C---------
Confidence 11345789999999999999998874 89999999999988742200000111122222211 1
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+.+++|+|.+++.++...... ..|+.+.+.+|.
T Consensus 230 -~~~~~p~dvA~~v~~l~s~~~~~----------itG~~i~vdGG~ 264 (267)
T 1vl8_A 230 -GRTGVPEDLKGVAVFLASEEAKY----------VTGQIIFVDGGW 264 (267)
T ss_dssp -SSCBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred -CCCcCHHHHHHHHHHHcCccccC----------CcCCeEEECCCC
Confidence 12678999999999998764422 234889888764
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-24 Score=205.14 Aligned_cols=240 Identities=16% Similarity=0.128 Sum_probs=168.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC-------Chh-HHHHHHHh-hhcCCeEEEEcccCCHHHHH
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY-------DPS-LKKARQAL-LERSGIFIVEGDINDMALLK 167 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~-------~~~-~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~ 167 (439)
+++|++|||||+|+||.+++++|+++|++|++++|+.... ... ......+. .....+.++.+|++|.++++
T Consensus 26 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 105 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ 105 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence 6789999999999999999999999999999999964311 111 11111111 12357899999999999999
Q ss_pred Hhhccc-----CccEEEEcccccCccc-----cccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCC
Q 013602 168 KLFDVV-----SFTHVMHLAAQAGVRY-----AMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLN 233 (439)
Q Consensus 168 ~~~~~~-----~~d~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~ 233 (439)
++++.+ ++|+||||||...... +.++++..+++|+.|+.++++++... +...+||++||...+..
T Consensus 106 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~- 184 (299)
T 3t7c_A 106 AAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRG- 184 (299)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSC-
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC-
Confidence 988764 6899999999754322 34556789999999999999887532 32349999999776421
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCC-CCceee
Q 013602 234 TKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRK-SIPIFE 309 (439)
Q Consensus 234 ~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~-~~~~~~ 309 (439)
......|+.+|++.+.+++.++.++ |+++++|+||.|.++....... ....... ......
T Consensus 185 -----------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-----~~~~~~~~~~~~~~ 248 (299)
T 3t7c_A 185 -----------AENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPT-----YRMFRPDLENPTVE 248 (299)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHH-----HHHHCTTSSSCCHH
T ss_pred -----------CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccch-----hhhhhhhhccchhh
Confidence 1346789999999999999999885 8999999999999885431100 0001000 000000
Q ss_pred c------CCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 310 S------PDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 310 ~------~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
. ...... ..+..++|+|++++.++...... ..|+++++.+|..+
T Consensus 249 ~~~~~~~~~~~~p-~r~~~pedvA~~v~fL~s~~a~~----------itG~~i~vdGG~~l 298 (299)
T 3t7c_A 249 DFQVASRQMHVLP-IPYVEPADISNAILFLVSDDARY----------ITGVSLPVDGGALL 298 (299)
T ss_dssp HHHHHHHHHSSSS-CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred HHHHHhhhhcccC-cCCCCHHHHHHHHHHHhCccccc----------CcCCEEeeCCCccc
Confidence 0 000001 34778999999999998765432 34589999887543
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=202.06 Aligned_cols=226 Identities=11% Similarity=0.056 Sum_probs=157.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.. ..... .... ...++.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~---~~~~~-~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA---PEAEA-AIRN-LGRRVLTVKCDVSQPGDVEAFGKQVIST 79 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC---HHHHH-HHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCch---hHHHH-HHHh-cCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999541 11111 1111 1346889999999999999888654
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.+++++ +++.+. ++||++||...+..
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~----------- 147 (249)
T 2ew8_A 80 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGW-GRIINLTSTTYWLK----------- 147 (249)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGGSC-----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-eEEEEEcchhhccC-----------
Confidence 679999999975432 23445668999999998887777 445553 49999999877542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ..... ...... .. .....+
T Consensus 148 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~-~~~~~~--~~--------~~~~~~ 214 (249)
T 2ew8_A 148 -IEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEAS-ALSAM-FDVLPN--ML--------QAIPRL 214 (249)
T ss_dssp -CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------C--TT--------SSSCSC
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhc-cccch-hhHHHH--hh--------CccCCC
Confidence 1346789999999999999998874 89999999999998743200 00000 000000 00 011247
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+++|+|++++.++...... ..|+++++.+|.
T Consensus 215 ~~p~dva~~~~~l~s~~~~~----------~tG~~~~vdGG~ 246 (249)
T 2ew8_A 215 QVPLDLTGAAAFLASDDASF----------ITGQTLAVDGGM 246 (249)
T ss_dssp CCTHHHHHHHHHHTSGGGTT----------CCSCEEEESSSC
T ss_pred CCHHHHHHHHHHHcCcccCC----------CCCcEEEECCCc
Confidence 88999999999998754321 334899988764
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=204.61 Aligned_cols=225 Identities=17% Similarity=0.160 Sum_probs=165.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ ......+.. ..++.++.+|++|.++++++++++
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER-----LLAEAVAAL-EAEAIAVVADVSDPKAVEAVFAEALEE 77 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTC-CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHh-cCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999321 111111111 257889999999999999988765
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~~ 246 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+... .++||++||...++. .
T Consensus 78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-------------~ 144 (263)
T 2a4k_A 78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA-------------F 144 (263)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH-------------H
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcCC-------------C
Confidence 689999999975432 12344567899999999999999876531 249999999887521 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeH
Q 013602 247 PASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYI 323 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v 323 (439)
+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..... .......+....+ . ..+.++
T Consensus 145 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~p--~----------~~~~~p 210 (263)
T 2a4k_A 145 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL--PPWAWEQEVGASP--L----------GRAGRP 210 (263)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS--CHHHHHHHHHTST--T----------CSCBCH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhc--CHHHHHHHHhcCC--C----------CCCcCH
Confidence 34689999999999999998874 89999999999998753311 1122222222211 1 126789
Q ss_pred HHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 324 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+|+|++++.++...... ..|+.+++.++...
T Consensus 211 ~dvA~~v~~l~s~~~~~----------~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 211 EEVAQAALFLLSEESAY----------ITGQALYVDGGRSI 241 (263)
T ss_dssp HHHHHHHHHHHSGGGTT----------CCSCEEEESTTTTT
T ss_pred HHHHHHHHHHhCccccC----------CcCCEEEECCCccc
Confidence 99999999998754421 23489999887543
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-25 Score=206.00 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=160.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|.. ...... ....+.++.+|++|.++++++++..
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-------~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRG-------EDVVAD--LGDRARFAAADVTDEAAVASALDLAETM 77 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC-------HHHHHH--TCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCch-------HHHHHh--cCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999822 111111 2457899999999999999888754
Q ss_pred -CccEEEEcccccCcc--------ccccChhHHHHHHHHHHHHHHHHHHhc-----------CCCCeEEEecCCcccCCC
Q 013602 174 -SFTHVMHLAAQAGVR--------YAMQNPNSYVHSNIAGLVSLLEVCKNA-----------NPQPAIVWASSSSVYGLN 233 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~--------~~~~~~~~~~~~Nv~gt~~ll~~~~~~-----------~~~~~~V~~SS~~v~g~~ 233 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++... ....+||++||...+..
T Consensus 78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~- 156 (257)
T 3tl3_A 78 GTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDG- 156 (257)
T ss_dssp SCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CC-
T ss_pred CCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCC-
Confidence 679999999975321 334556789999999999999988643 12238999999776421
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeec
Q 013602 234 TKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFES 310 (439)
Q Consensus 234 ~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~ 310 (439)
..+...|+.||.+.+.+++.++.++ |+++++|+||.|.++..... .......+....+.
T Consensus 157 -----------~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~----- 218 (257)
T 3tl3_A 157 -----------QIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASL--PEEARASLGKQVPH----- 218 (257)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC-----CHHHHHHHHHTSSS-----
T ss_pred -----------CCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhc--cHHHHHHHHhcCCC-----
Confidence 1235689999999999999998884 89999999999988754311 11222222222211
Q ss_pred CCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 311 PDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 311 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
...+.+++|+|++++.++.... ..|+++++.+|..+.
T Consensus 219 ------~~r~~~p~dva~~v~~l~s~~~------------itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 219 ------PSRLGNPDEYGALAVHIIENPM------------LNGEVIRLDGAIRMA 255 (257)
T ss_dssp ------SCSCBCHHHHHHHHHHHHHCTT------------CCSCEEEESTTC---
T ss_pred ------CCCccCHHHHHHHHHHHhcCCC------------CCCCEEEECCCccCC
Confidence 0236789999999999987522 344899998876543
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=205.67 Aligned_cols=234 Identities=15% Similarity=0.071 Sum_probs=165.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+ .......+.. ....+.++.+|++|.++++++++.+
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRT----EVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVL 101 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999432 1111111111 2347889999999999999998865
Q ss_pred ---CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++ ++.+. ++||++||...+...
T Consensus 102 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~Iv~isS~~~~~~~-------- 172 (283)
T 3v8b_A 102 KFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGG-GAIVVVSSINGTRTF-------- 172 (283)
T ss_dssp HHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCSBTTTBC--------
T ss_pred HhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-ceEEEEcChhhccCC--------
Confidence 78999999997533 2234456689999999999999887 44543 399999997654210
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce-
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA- 317 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 317 (439)
...+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++........... ......... ......
T Consensus 173 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~----~~~~~~~~~---~~~~p~~ 243 (283)
T 3v8b_A 173 --TTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEE----ETAIPVEWP---KGQVPIT 243 (283)
T ss_dssp --CSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHH----HHSCCCBCT---TCSCGGG
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccch----hhhhhhhhh---hhcCccc
Confidence 11346789999999999999999884 79999999999998754321100000 000001100 011111
Q ss_pred -eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 -RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 -~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+..++|+|.+++.++...... ..|+++++.+|.
T Consensus 244 ~~r~~~pedvA~~v~fL~s~~a~~----------itG~~i~vdGG~ 279 (283)
T 3v8b_A 244 DGQPGRSEDVAELIRFLVSERARH----------VTGSPVWIDGGQ 279 (283)
T ss_dssp TTCCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTH
T ss_pred cCCCCCHHHHHHHHHHHcCccccC----------CcCCEEEECcCc
Confidence 34678999999999998755432 345899998763
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=210.82 Aligned_cols=241 Identities=14% Similarity=0.135 Sum_probs=168.4
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCC-------hhHHHHHHHh--hhcCCeEEEEcccCCHHH
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD-------PSLKKARQAL--LERSGIFIVEGDINDMAL 165 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~-------~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~ 165 (439)
..+++|+||||||+|+||+++++.|+++|++|++++|+..... ........+. .....+.++.+|++|.++
T Consensus 42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLAS 121 (317)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 3478899999999999999999999999999999998632211 1111111111 123578999999999999
Q ss_pred HHHhhccc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCC
Q 013602 166 LKKLFDVV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGL 232 (439)
Q Consensus 166 ~~~~~~~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~ 232 (439)
++++++.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++.. .+...+||++||...+..
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~ 201 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRG 201 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCC
Confidence 99998865 789999999985432 23455678999999999998888743 332348999999776431
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCc---
Q 013602 233 NTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIP--- 306 (439)
Q Consensus 233 ~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~--- 306 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..... .+...+......+
T Consensus 202 ------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~----~~~~~~~~~~~~~~~~ 265 (317)
T 3oec_A 202 ------------APGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNE----KLLKMFLPHLENPTRE 265 (317)
T ss_dssp ------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCH----HHHHHHCTTCSSCCHH
T ss_pred ------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccch----hhhhhhhhhccccchh
Confidence 1345789999999999999999885 89999999999998632110 0111111100000
Q ss_pred ----eeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 307 ----IFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 307 ----~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.+. ........|++++|+|.+++.++...... ..|+++++.+|..
T Consensus 266 ~~~~~~~--~~~~~p~~~~~pedvA~av~fL~s~~a~~----------itG~~i~vdGG~~ 314 (317)
T 3oec_A 266 DAAELFS--QLTLLPIPWVEPEDVSNAVAWLASDEARY----------IHGAAIPVDGGQL 314 (317)
T ss_dssp HHHHHHT--TTCSSSSSSBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTGG
T ss_pred HHHHHHh--hhccCCCCCCCHHHHHHHHHHHcCCcccC----------CCCCEEEECcchh
Confidence 000 00111146889999999999988655432 3458999988753
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=208.78 Aligned_cols=229 Identities=12% Similarity=0.112 Sum_probs=164.3
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh------hcCCeEEEEcccCCHHHHHHh
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL------ERSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~v~~~~~Dl~d~~~~~~~ 169 (439)
.+++|+||||||+||||++++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.++++++
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 90 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLER----LKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNL 90 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHH
Confidence 3678999999999999999999999999999999994321 111111111 134789999999999999999
Q ss_pred hccc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCC
Q 013602 170 FDVV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKV 236 (439)
Q Consensus 170 ~~~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~ 236 (439)
++.+ ++|+||||||..... .+.++++..+++|+.|+.++++++.+. + .++||++||...++
T Consensus 91 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~----- 164 (303)
T 1yxm_A 91 VKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPTKAG----- 164 (303)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCCTTC-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCeEEEEEeecccC-----
Confidence 8864 579999999964322 223445678999999999999987542 2 23999999987322
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCC--CCCCChHHHHHHHHHcCCCCceeecC
Q 013602 237 PFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPW--GRPDMAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 237 ~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~--~~~~~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
......|+.+|.+.+.+++.++.++ |+++++||||.|+|+. .........+...+...
T Consensus 165 --------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--------- 227 (303)
T 1yxm_A 165 --------FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQK--------- 227 (303)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGG---------
T ss_pred --------CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhc---------
Confidence 1345689999999999999998885 8999999999999983 21100000000000000
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
.....+.+++|+|++++.++...... ..|+.+++.+|..+
T Consensus 228 ---~p~~~~~~~~dvA~~i~~l~~~~~~~----------~~G~~~~v~gG~~~ 267 (303)
T 1yxm_A 228 ---IPAKRIGVPEEVSSVVCFLLSPAASF----------ITGQSVDVDGGRSL 267 (303)
T ss_dssp ---STTSSCBCTHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred ---CcccCCCCHHHHHHHHHHHhCccccc----------CCCcEEEECCCeec
Confidence 01123788999999999998654421 23489999887654
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-25 Score=204.99 Aligned_cols=230 Identities=14% Similarity=0.065 Sum_probs=164.4
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
...+|+||||||+|+||++++++|+++|++|+++++......... ..........+.++.+|++|.++++++++.+
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKW--LEDQKALGFDFYASEGNVGDWDSTKQAFDKVKA 87 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHH--HHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH--HHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999984332211111 1111112357899999999999999998865
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~----------- 155 (256)
T 3ezl_A 88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGW-GRIINISSVNGQK----------- 155 (256)
T ss_dssp HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCCCGGG-----------
T ss_pred hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcchhhcc-----------
Confidence 789999999975432 234556689999999988877765 44443 3999999976542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
...+...|+.+|++.+.+++.++.++ |+++++|+||.|.++..... .......+....+. ..
T Consensus 156 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~~~------------~~ 220 (256)
T 3ezl_A 156 -GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI--RPDVLEKIVATIPV------------RR 220 (256)
T ss_dssp -SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS--CHHHHHHHHHHSTT------------SS
T ss_pred -CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcccccc--CHHHHHHHHhcCCC------------CC
Confidence 11356799999999999999998874 89999999999987632211 11233333333222 12
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+.+++|+|++++.++...... ..|+++++.+|..+
T Consensus 221 ~~~~~dva~~~~~l~s~~~~~----------~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 221 LGSPDEIGSIVAWLASEESGF----------STGADFSLNGGLHM 255 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSCC
T ss_pred CcCHHHHHHHHHHHhCCcccC----------CcCcEEEECCCEeC
Confidence 567899999999998655432 34589999887543
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=206.42 Aligned_cols=228 Identities=14% Similarity=0.116 Sum_probs=163.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh-cC---CeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-RS---GIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~---~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ .......+... .. ++.++.+|++|.++++++++.
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE----RLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINS 79 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHH
Confidence 67899999999999999999999999999999999432 11111111111 12 688999999999999998876
Q ss_pred c-----CccEEEEcccccCcc--------ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR--------YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTK 235 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~--------~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~ 235 (439)
+ ++|+||||||..... .+.++++..+++|+.|+.++++++.. .+ ++||++||...+...
T Consensus 80 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~-- 155 (280)
T 1xkq_A 80 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSSIVAGPQA-- 155 (280)
T ss_dssp HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGSSSC--
T ss_pred HHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecCccccCCC--
Confidence 4 689999999975332 22344668999999999999888764 33 499999998765321
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCC--Ch-----HHHHHHHHHcCCCC
Q 013602 236 VPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPD--MA-----YFFFTRDILNRKSI 305 (439)
Q Consensus 236 ~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~--~~-----~~~~~~~~~~g~~~ 305 (439)
..+...|+.+|++.+.+++.++.+ +|+++++|+||.|+++..... .. ...+...+.. ..
T Consensus 156 ---------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 224 (280)
T 1xkq_A 156 ---------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKE--CI 224 (280)
T ss_dssp ---------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTT--TC
T ss_pred ---------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHc--CC
Confidence 024578999999999999999876 489999999999998742110 00 0001111111 11
Q ss_pred ceeecCCCCcceeeeeeHHHHHHHHHHHHhhc-hhccCCCCCccCCCCCcEEEecCCCc
Q 013602 306 PIFESPDHGTVARDFTYIDDIVKGCLAALDTA-EKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 306 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+ ...+.+++|+|++++.++... ... ..|+++++.+|..
T Consensus 225 p----------~~~~~~pedvA~~v~~l~s~~~~~~----------~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 225 P----------IGAAGKPEHIANIILFLADRNLSFY----------ILGQSIVADGGTS 263 (280)
T ss_dssp T----------TSSCBCHHHHHHHHHHHHCHHHHTT----------CCSCEEEESTTGG
T ss_pred C----------CCCCCCHHHHHHHHHHhcCcccccC----------ccCCeEEECCCcc
Confidence 1 123788999999999998754 321 2348999988753
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-24 Score=197.09 Aligned_cols=221 Identities=17% Similarity=0.122 Sum_probs=162.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|++|||||+|+||++++++|+++|++|++++|+.+ ... +.....++.++.+|++|.++++++++.+
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-------~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG-------PLR-EAAEAVGAHPVVMDVADPASVERGFAEALAH 74 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH-------HHH-HHHHTTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH-------HHH-HHHHHcCCEEEEecCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999321 111 1111124889999999999999988764
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. + .++||++||...++.
T Consensus 75 ~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~----------- 142 (245)
T 1uls_A 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTASRVYLGN----------- 142 (245)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEECCGGGGCC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEccchhcCC-----------
Confidence 579999999975432 223455688999999999998887543 3 349999999875431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .......+....+ . ..+
T Consensus 143 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~p--~----------~~~ 206 (245)
T 1uls_A 143 --LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV--PEKVREKAIAATP--L----------GRA 206 (245)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS--CHHHHHHHHHTCT--T----------CSC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhc--CHHHHHHHHhhCC--C----------CCC
Confidence 245789999999999999998874 89999999999988753311 1112222222211 1 126
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.+++|+|++++.++...... ..|+.+++.+|..
T Consensus 207 ~~~~dvA~~v~~l~s~~~~~----------~tG~~~~vdgG~~ 239 (245)
T 1uls_A 207 GKPLEVAYAALFLLSDESSF----------ITGQVLFVDGGRT 239 (245)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCchhcC----------CcCCEEEECCCcc
Confidence 78999999999998754422 2348899887643
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=202.57 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=160.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh---cCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE---RSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+. ......+... ..++.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREK----LEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKA 80 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHH
Confidence 578999999999999999999999999999999994321 1111111111 227899999999999999888742
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
.+|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 81 ~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~--------- 150 (260)
T 2z1n_A 81 RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGW-GRMVYIGSVTLLRP--------- 150 (260)
T ss_dssp HHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC---------
T ss_pred HHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECchhhcCC---------
Confidence 379999999975332 234456789999999987666665 34453 49999999877532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++.......................+. ......
T Consensus 151 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~ 224 (260)
T 2z1n_A 151 ---WQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMA---SRIPMG 224 (260)
T ss_dssp ---CTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC--------------------------CCTTS
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHH---hcCCCC
Confidence 1345789999999999999998875 8999999999999885431000000000000000000000 011112
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 225 r~~~~~dva~~v~~l~s~~~~~----------~tG~~i~vdGG~ 258 (260)
T 2z1n_A 225 RVGKPEELASVVAFLASEKASF----------ITGAVIPVDGGA 258 (260)
T ss_dssp SCCCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTT
T ss_pred CccCHHHHHHHHHHHhCccccC----------CCCCEEEeCCCc
Confidence 3778999999999998765432 334899988763
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=203.26 Aligned_cols=235 Identities=11% Similarity=0.076 Sum_probs=160.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh--cCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE--RSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. .......+... ..++.++.+|++|.++++++++.+
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 78 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAA---EIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHH---HHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcch---HHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999999999999985421 01111111111 346889999999999999988754
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 79 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~--------- 148 (260)
T 1x1t_A 79 RQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGF-GRIINIASAHGLVA--------- 148 (260)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC---------
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEECcHHhCcC---------
Confidence 679999999975432 2344567899999999998888874 3342 49999999876531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHH-HHc-CCCCcee-ecCCCCc
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRD-ILN-RKSIPIF-ESPDHGT 315 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~-~~~-g~~~~~~-~~~~~~~ 315 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ....... -.. ......+ . ...
T Consensus 149 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~ 220 (260)
T 1x1t_A 149 ---SANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQ--ISALAEKNGVDQETAARELLS---EKQ 220 (260)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC--------------------------CHH---HHC
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHh--hhhhccccCCchHHHHHHHhh---ccC
Confidence 1346789999999999999998875 89999999999998753211 0000000 000 0000000 0 001
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
....+.+++|+|++++.++...... ..|++|++.+|.
T Consensus 221 p~~~~~~p~dva~~~~~l~s~~~~~----------~tG~~~~vdgG~ 257 (260)
T 1x1t_A 221 PSLQFVTPEQLGGTAVFLASDAAAQ----------ITGTTVSVDGGW 257 (260)
T ss_dssp TTCCCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred CCCCCcCHHHHHHHHHHHhChhhcC----------CCCCEEEECCCc
Confidence 1234789999999999998754321 234899998764
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-25 Score=208.80 Aligned_cols=230 Identities=15% Similarity=0.070 Sum_probs=155.8
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.+.+|+||||||+|+||++++++|+++|++|++++|... ........+. ....++.++.+|++|.++++++++.+
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDA---EGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCH---HHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999996321 1111111111 12357899999999999999888865
Q ss_pred ----CccEEEEcccccCc------cccccChhHHHHHHHHHHHHHHHHHHhc----CC--CCeEEEecCCcccCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAGLVSLLEVCKNA----NP--QPAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~--~~~~V~~SS~~v~g~~~~~~ 237 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+. +. .++||++||...+.
T Consensus 103 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------ 176 (280)
T 4da9_A 103 AEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM------ 176 (280)
T ss_dssp HHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC----------
T ss_pred HHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc------
Confidence 68999999997321 1234556788999999998888877432 21 23999999976542
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCC
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
...+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++..... .......+.. ..
T Consensus 177 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~-----------~~ 237 (280)
T 4da9_A 177 ------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAV--SGKYDGLIES-----------GL 237 (280)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------------------
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhc--chhHHHHHhh-----------cC
Confidence 1134578999999999999999988 489999999999998743210 0000000000 01
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.....+..++|+|++++.++...... ..|+++++.+|..
T Consensus 238 ~p~~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~ 276 (280)
T 4da9_A 238 VPMRRWGEPEDIGNIVAGLAGGQFGF----------ATGSVIQADGGLS 276 (280)
T ss_dssp ----CCBCHHHHHHHHHHHHTSTTGG----------GTTCEEEESTTCC
T ss_pred CCcCCcCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCcc
Confidence 12234788999999999998765432 2348999988754
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=203.33 Aligned_cols=226 Identities=14% Similarity=0.100 Sum_probs=160.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|... ........+.. ...++.++.+|++|.++++++++.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNE---QKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVD 78 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999998321 11111111111 1346889999999999999988864
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~---------- 147 (246)
T 2uvd_A 79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRH-GRIVNIASVVGVTG---------- 147 (246)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECCHHhcCC----------
Confidence 679999999975432 2344566899999999777766653 4443 49999999765321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... ......+.... +. ..
T Consensus 148 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~--p~----------~~ 211 (246)
T 2uvd_A 148 --NPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLD--ENIKAEMLKLI--PA----------AQ 211 (246)
T ss_dssp --CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCC--TTHHHHHHHTC--TT----------CS
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcC--HHHHHHHHhcC--CC----------CC
Confidence 1245789999999999999988874 899999999999887433111 01111111111 11 13
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+++++|+|++++.++...... ..|+++++.+|.
T Consensus 212 ~~~~~dvA~~~~~l~s~~~~~----------~tG~~~~vdgG~ 244 (246)
T 2uvd_A 212 FGEAQDIANAVTFFASDQSKY----------ITGQTLNVDGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHcCchhcC----------CCCCEEEECcCc
Confidence 788999999999998654321 234899988764
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=202.35 Aligned_cols=228 Identities=18% Similarity=0.117 Sum_probs=161.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ .............++.++.+|++|.++++++++.+
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD----VGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999321 11111111111257899999999999999988864
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++.+++ ++.+..++||++||...+..
T Consensus 80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----------- 148 (251)
T 1zk4_A 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVG----------- 148 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSC-----------
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccC-----------
Confidence 579999999975432 223445689999999877766654 44443149999999876542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH-----hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI-----YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~-----~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
..+...|+.+|.+.|.+++.++.+ .|+++++||||.|+++....... ..... ..... ....
T Consensus 149 -~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~--~~~~~-~~~~~----------~~~~ 214 (251)
T 1zk4_A 149 -DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG--AEEAM-SQRTK----------TPMG 214 (251)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT--HHHHH-TSTTT----------CTTS
T ss_pred -CCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCc--hhhhH-HHhhc----------CCCC
Confidence 134678999999999999988764 47999999999999874221000 00000 00111 1122
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.+++++|+|++++.++...... ..|+.|++.+|..
T Consensus 215 ~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 215 HIGEPNDIAYICVYLASNESKF----------ATGSEFVVDGGYT 249 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHcCccccc----------ccCcEEEECCCcc
Confidence 4789999999999998765421 2348999988753
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=208.99 Aligned_cols=217 Identities=16% Similarity=0.104 Sum_probs=153.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+. ......+.. ....+.++.+|++|.++++++++.+
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPA----LEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFR 104 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 111111111 2347899999999999999998865
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+..++||++||...+.
T Consensus 105 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 173 (301)
T 3tjr_A 105 LLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV----------- 173 (301)
T ss_dssp HHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-----------
T ss_pred hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC-----------
Confidence 689999999985432 2344567899999999999988874 333234999999977643
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHH-----HHcCCCCceeecCCCC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRD-----ILNRKSIPIFESPDHG 314 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~ 314 (439)
...+...|+.||++.+.+++.++.++ |+++++|+||.|.++... ..... .....+...+ +..
T Consensus 174 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~------~~~~~~~~~~~~~~~~~~~~---~~~ 243 (301)
T 3tjr_A 174 -PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVS------NSERIRGADYGMSATPEGAF---GPL 243 (301)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHH------HHHHHC--------------------
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccccc------ccccccchhhccccChhhhc---ccc
Confidence 11346789999999999999998875 899999999999876211 11000 0001111111 122
Q ss_pred cceeeeeeHHHHHHHHHHHHhhch
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
.....+++++|+|++++.+++...
T Consensus 244 ~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 244 PTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp -----CCCHHHHHHHHHHHHHHTC
T ss_pred ccccCCCCHHHHHHHHHHHHhcCC
Confidence 334568999999999999998654
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=203.54 Aligned_cols=224 Identities=12% Similarity=0.109 Sum_probs=162.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+.. .....+ . ..++.++.+|++|.++++++++.+
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG----EAQAKK-L-GNNCVFAPADVTSEKDVQTALALAKGK 83 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH----HHHHHH-H-CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhH----HHHHHH-h-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999965421 111111 1 347899999999999999998854
Q ss_pred --CccEEEEcccccCcc----------ccccChhHHHHHHHHHHHHHHHHHHhc----------CCCCeEEEecCCcccC
Q 013602 174 --SFTHVMHLAAQAGVR----------YAMQNPNSYVHSNIAGLVSLLEVCKNA----------NPQPAIVWASSSSVYG 231 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----------~~~~~~~~~~~~Nv~gt~~ll~~~~~~----------~~~~~~V~~SS~~v~g 231 (439)
++|+||||||..... .+.++++..+++|+.++.++++++.+. + .++||++||...+.
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~ 162 (265)
T 2o23_A 84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQ-RGVIINTASVAAFE 162 (265)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSC-CEEEEEECCTHHHH
T ss_pred CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCC-CcEEEEeCChhhcC
Confidence 679999999975432 233456789999999999999988654 3 34999999987653
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCcee
Q 013602 232 LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIF 308 (439)
Q Consensus 232 ~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~ 308 (439)
. ..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .......+... .+.
T Consensus 163 ~------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~--~~~- 225 (265)
T 2o23_A 163 G------------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSL--PEKVCNFLASQ--VPF- 225 (265)
T ss_dssp C------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------CHHHHT--CSS-
T ss_pred C------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCcccccc--CHHHHHHHHHc--CCC-
Confidence 1 1346789999999999999998874 89999999999988743210 00000001111 111
Q ss_pred ecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 309 ESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 309 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
...+++++|+|++++.++.... ..|+.+++.+|..+
T Consensus 226 --------~~~~~~~~dva~~~~~l~~~~~------------~~G~~i~vdgG~~~ 261 (265)
T 2o23_A 226 --------PSRLGDPAEYAHLVQAIIENPF------------LNGEVIRLDGAIRM 261 (265)
T ss_dssp --------SCSCBCHHHHHHHHHHHHHCTT------------CCSCEEEESTTCCC
T ss_pred --------cCCCCCHHHHHHHHHHHhhcCc------------cCceEEEECCCEec
Confidence 0236889999999999986432 23489999877543
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=204.97 Aligned_cols=225 Identities=15% Similarity=0.105 Sum_probs=162.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ .......+.. ...++.++.+|++|.++++++++.+
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEE----GLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVE 95 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999432 1111111111 1346889999999999999888754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA------NPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~------~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. + .++||++||...+..
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~-~g~iv~isS~~~~~~-------- 166 (277)
T 2rhc_B 96 RYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG-TGRIVNIASTGGKQG-------- 166 (277)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHT-EEEEEEECCGGGTSC--------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcC-CeEEEEECccccccC--------
Confidence 679999999975432 223445689999999999999987654 3 239999999765421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChH-----------HHHHHHHHcCCCCc
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAY-----------FFFTRDILNRKSIP 306 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~-----------~~~~~~~~~g~~~~ 306 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++.... .. ......+...
T Consensus 167 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---- 236 (277)
T 2rhc_B 167 ----VVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAAS--VREHYSDIWEVSTEEAFDRITAR---- 236 (277)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHH--HHHHHHHHHTCCHHHHHHHHHHH----
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhh--hhhhcccccccchHHHHHHHHhc----
Confidence 1345789999999999999998874 7999999999998863210 00 0000111111
Q ss_pred eeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 307 IFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 307 ~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.....+++++|+|++++.++...... ..|++|++.+|.
T Consensus 237 --------~p~~r~~~~~dvA~~v~~l~s~~~~~----------~tG~~~~vdGG~ 274 (277)
T 2rhc_B 237 --------VPIGRYVQPSEVAEMVAYLIGPGAAA----------VTAQALNVCGGL 274 (277)
T ss_dssp --------STTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred --------CCCCCCcCHHHHHHHHHHHhCchhcC----------CCCcEEEECCCc
Confidence 11224789999999999998765421 234899998764
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=202.40 Aligned_cols=223 Identities=11% Similarity=0.054 Sum_probs=164.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+.+|+||||||+|+||++++++|+++|++|+++++... .......+. ....++.++.+|++|.++++++++.+
T Consensus 24 l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~----~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (267)
T 4iiu_A 24 AMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDA----AGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEI 99 (267)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCch----HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999988765221 111111111 12357899999999999999988765
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH-----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK-----NANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~-----~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ .++||++||...+..
T Consensus 100 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~~-------- 170 (267)
T 4iiu_A 100 AQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQ-GGRIITLSSVSGVMG-------- 170 (267)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCHHHHHC--------
T ss_pred HHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEEcchHhccC--------
Confidence 689999999985432 2345567899999999999998863 333 349999999655421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++..... ...........+..
T Consensus 171 ----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~p~~----------- 232 (267)
T 4iiu_A 171 ----NRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME---ESALKEAMSMIPMK----------- 232 (267)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC---HHHHHHHHHTCTTC-----------
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc---HHHHHHHHhcCCCC-----------
Confidence 1356789999999999999998885 89999999999998865422 23333333333221
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.+..++|+|++++.++...... ..|+++++.+|
T Consensus 233 -~~~~~edva~~~~~L~s~~~~~----------itG~~i~vdGG 265 (267)
T 4iiu_A 233 -RMGQAEEVAGLASYLMSDIAGY----------VTRQVISINGG 265 (267)
T ss_dssp -SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred -CCcCHHHHHHHHHHHhCCcccC----------ccCCEEEeCCC
Confidence 2577999999999998765432 34589999775
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-24 Score=202.11 Aligned_cols=227 Identities=11% Similarity=0.031 Sum_probs=165.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++++... .......+. .....+.++.+|++|.++++++++.+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAE---RAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999874321 111111111 12357889999999999999988865
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+.- ...+||++||..... .+.
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~-----------~~~ 174 (271)
T 3v2g_A 106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL-----------VPW 174 (271)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC-----------CCS
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc-----------CCC
Confidence 689999999975432 2345567899999999999999987652 134999999854321 011
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.+...|+.+|++.+.+++.++.++ |+++++|+||.|.++....... .........+.. .+..
T Consensus 175 ~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~---~~~~~~~~~~~~------------r~~~ 239 (271)
T 3v2g_A 175 PGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGD---HAEAQRERIATG------------SYGE 239 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCS---SHHHHHHTCTTS------------SCBC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccch---hHHHHHhcCCCC------------CCCC
Confidence 346789999999999999999885 8999999999999885432211 111222222211 2567
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
++|+|.+++.++...... ..|+++++.+|.
T Consensus 240 pedvA~~v~fL~s~~~~~----------itG~~i~vdGG~ 269 (271)
T 3v2g_A 240 PQDIAGLVAWLAGPQGKF----------VTGASLTIDGGA 269 (271)
T ss_dssp HHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred HHHHHHHHHHHhCcccCC----------ccCCEEEeCcCc
Confidence 899999999998654432 345899998764
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-24 Score=203.86 Aligned_cols=225 Identities=11% Similarity=0.070 Sum_probs=160.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||+++++.|+++|++|++++|+.+ .......+.. ...++.++.+|++|.++++++++.+
T Consensus 42 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 117 (285)
T 2c07_A 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK----SCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT 117 (285)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH----HHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999888321 1111111111 1346889999999999999988754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 118 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~---------- 186 (285)
T 2c07_A 118 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY-GRIINISSIVGLTG---------- 186 (285)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHC----------
T ss_pred hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CEEEEECChhhccC----------
Confidence 679999999975432 2344567899999999888777764 3443 49999999765421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..... ...+...+.... +. ..
T Consensus 187 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~--~~----------~~ 250 (285)
T 2c07_A 187 --NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI--SEQIKKNIISNI--PA----------GR 250 (285)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C--CHHHHHHHHTTC--TT----------SS
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhc--CHHHHHHHHhhC--CC----------CC
Confidence 1345789999999999999998874 89999999999998753311 112222222221 11 13
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+++++|+|++++.++...... ..|++|++.+|.
T Consensus 251 ~~~~~dvA~~~~~l~~~~~~~----------~~G~~i~v~gG~ 283 (285)
T 2c07_A 251 MGTPEEVANLACFLSSDKSGY----------INGRVFVIDGGL 283 (285)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred CCCHHHHHHHHHHHhCCCcCC----------CCCCEEEeCCCc
Confidence 789999999999998765431 234899998764
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-25 Score=204.66 Aligned_cols=224 Identities=16% Similarity=0.142 Sum_probs=163.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+.+ ......... ..++.++.+|++|.++++++++.+
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAE-----GAKAAAASI-GKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHH-----HHHHHHHHH-CTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999998321 111111111 457899999999999999998865
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.+++++ +++.+..++||++||...+..
T Consensus 77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 146 (247)
T 3rwb_A 77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAG---------- 146 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHT----------
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccC----------
Confidence 689999999975432 23445678999999999888887 445443349999999765431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCC--ChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPD--MAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++..... .....+.... . ..
T Consensus 147 --~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~---~------------~~ 209 (247)
T 3rwb_A 147 --TPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML---Q------------AM 209 (247)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH---S------------SS
T ss_pred --CCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc---c------------cc
Confidence 134678999999999999999988 489999999999987632110 0000111000 1 11
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+...+|+|++++.++...... ..|+++++.+|.
T Consensus 210 ~r~~~pedva~~v~~L~s~~~~~----------itG~~i~vdGG~ 244 (247)
T 3rwb_A 210 KGKGQPEHIADVVSFLASDDARW----------ITGQTLNVDAGM 244 (247)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred CCCcCHHHHHHHHHHHhCccccC----------CCCCEEEECCCc
Confidence 22567899999999998765432 345899998764
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=203.49 Aligned_cols=209 Identities=15% Similarity=0.096 Sum_probs=155.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+. ...+......+.++.+|++|.++++++++.+
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~---------~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRV---------ERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKI 84 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCH---------HHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999921 2223334457899999999999999988865
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-g~IV~isS~~~~~~----------- 152 (266)
T 3p19_A 85 YGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNC-GTIINISSIAGKKT----------- 152 (266)
T ss_dssp HCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTSC-----------
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEcChhhCCC-----------
Confidence 679999999985432 233445678999999998877765 34453 49999999776531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++........ ........ ...+ ...+
T Consensus 153 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~-~~~~~~~~-~~~~----------~~r~ 219 (266)
T 3p19_A 153 -FPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQ-QIKDGYDA-WRVD----------MGGV 219 (266)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCH-HHHHHHHH-HHHH----------TTCC
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccch-hhhHHHHh-hccc----------ccCC
Confidence 1345789999999999999998884 89999999999998743211100 11110000 0001 1236
Q ss_pred eeHHHHHHHHHHHHhhchh
Q 013602 321 TYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~ 339 (439)
++++|+|++++.++..+..
T Consensus 220 ~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 220 LAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp BCHHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 8899999999999987764
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-24 Score=199.92 Aligned_cols=222 Identities=17% Similarity=0.131 Sum_probs=161.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEccc--CCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDI--NDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl--~d~~~~~~~~~~ 172 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+. .....+.++.+|+ +|.++++++++.
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 85 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEK----LRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQR 85 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 11111111 1223788999999 999999888876
Q ss_pred c-----CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~ 238 (439)
+ ++|+||||||.... ..+.++++..+++|+.|+.++++++. +.+ .++||++||...+.
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~------- 157 (252)
T 3f1l_A 86 IAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD-AGSLVFTSSSVGRQ------- 157 (252)
T ss_dssp HHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGTS-------
T ss_pred HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC-CCEEEEECChhhcc-------
Confidence 5 68999999997432 12334456889999999999998873 444 34999999976542
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHhC--CcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIYG--LSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~g--i~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
...+...|+.+|.+.+.+++.++.+++ +++++|+||.|..+ +.........
T Consensus 158 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~----------~~~~~~~~~~------------ 210 (252)
T 3f1l_A 158 -----GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTA----------MRASAFPTED------------ 210 (252)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSH----------HHHHHCTTCC------------
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCc----------hhhhhCCccc------------
Confidence 113457899999999999999999864 99999999999764 1121111111
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHH
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVS 367 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~ 367 (439)
...+..++|+|.+++.++...... ..|+++++.+|...++.
T Consensus 211 ~~~~~~p~dva~~~~~L~s~~~~~----------itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 211 PQKLKTPADIMPLYLWLMGDDSRR----------KTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp GGGSBCTGGGHHHHHHHHSGGGTT----------CCSCEEESSCC------
T ss_pred hhccCCHHHHHHHHHHHcCccccC----------CCCCEEEeCCCcCCCCC
Confidence 123677899999999998765532 34589999988766654
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=202.54 Aligned_cols=212 Identities=8% Similarity=0.025 Sum_probs=147.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+..+....... ....++.++.+|++|.++++++++.+
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIE---AAGGRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHH---HTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999995543222111111 11357899999999999999999865
Q ss_pred -CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+. .
T Consensus 82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------------~ 148 (252)
T 3h7a_A 82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQ-GKIFFTGATASLR------------G 148 (252)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEEGGGTC------------C
T ss_pred CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECCHHHcC------------C
Confidence 789999999975432 234456789999999988888876 34442 3999999976542 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcE-EEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSL-TGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~-~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
......|+.||++.+.+++.++.++ |+++ ++|+||.|..+..... .... ...+ ....... +
T Consensus 149 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~------~~~~-----~~~~---~~~~~~~-~ 213 (252)
T 3h7a_A 149 GSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRER------REQM-----FGKD---ALANPDL-L 213 (252)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC------------------------------------------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhcc------chhh-----hhhh---hhcCCcc-C
Confidence 1346789999999999999999885 8999 8999999987643210 0000 0001 0111223 8
Q ss_pred eeHHHHHHHHHHHHhhchh
Q 013602 321 TYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~ 339 (439)
..++|+|++++.++..+..
T Consensus 214 ~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 214 MPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp CCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHhCchh
Confidence 8999999999999986654
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=209.03 Aligned_cols=177 Identities=18% Similarity=0.145 Sum_probs=134.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+.+|+||||||+||||++++++|+++|++|++.+|+............... ....++.++.+|++|.++++++++.+
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999996543333222221111 12357999999999999999999865
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||..... .+.++.+..+++|+.|+.++++++ ++.+. ++||++||.+.+..
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~-g~iV~isS~~~~~~--------- 152 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKH-GLLIWISSSSSAGG--------- 152 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC---------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEecchhccC---------
Confidence 689999999975432 234455678999999999999988 55553 39999999876531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPW 285 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~ 285 (439)
.......|+.||++.|.+++.++.+ +|+++++|+||.|.++.
T Consensus 153 --~~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 153 --TPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp --CCSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 1123568999999999999999988 48999999999998653
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=201.57 Aligned_cols=223 Identities=10% Similarity=0.048 Sum_probs=156.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEE-ECCCCCCChhHHHHHHHhh-hcCCeEE-EEcccCCHHHHHHhhccc--
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGL-DNFNDYYDPSLKKARQALL-ERSGIFI-VEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~-~~~~v~~-~~~Dl~d~~~~~~~~~~~-- 173 (439)
+|+||||||+|+||++++++|+++|++|+++ +|+.+ .......+.. ...++.+ +.+|++|.++++++++..
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNRE----KAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAE 76 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHH----HHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH----HHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999998 67321 1111111111 1235666 999999999999888753
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLE----VCKNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~----~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++ .+++.+. ++||++||...+..
T Consensus 77 ~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~---------- 145 (245)
T 2ph3_A 77 VLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARF-GRIVNITSVVGILG---------- 145 (245)
T ss_dssp HHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHC----------
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC-CEEEEEeChhhccC----------
Confidence 579999999975432 2344566889999999555554 4455553 49999999754321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|.+.+.+++.+++++ |+++++||||.++++..... ...+...+..+.+ ...
T Consensus 146 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~~~ 209 (245)
T 2ph3_A 146 --NPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERL--PQEVKEAYLKQIP------------AGR 209 (245)
T ss_dssp --CSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS--CHHHHHHHHHTCT------------TCS
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhc--CHHHHHHHHhcCC------------CCC
Confidence 1245789999999999999998875 89999999999998743211 1112222222211 124
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+++++|+|++++.++...... ..|++|++.++.
T Consensus 210 ~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~ 242 (245)
T 2ph3_A 210 FGRPEEVAEAVAFLVSEKAGY----------ITGQTLCVDGGL 242 (245)
T ss_dssp CBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTC
T ss_pred CcCHHHHHHHHHHHhCccccc----------ccCCEEEECCCC
Confidence 789999999999998764321 234899998764
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=200.24 Aligned_cols=233 Identities=14% Similarity=0.059 Sum_probs=162.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
+|+||||||+|+||++++++|+++|++|++++|+.+. ........+.. ...++.++.+|++|.++++++++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQE--EQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKL 79 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcch--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999994321 00111111111 1346889999999999999888754
Q ss_pred -CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+..++||++||...+..
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 147 (258)
T 3a28_C 80 GGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQG------------ 147 (258)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSC------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccC------------
Confidence 679999999975432 23445678999999999998888764 343149999999776431
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHH--cCC--C--CceeecCCCCc
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL--NRK--S--IPIFESPDHGT 315 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~--~g~--~--~~~~~~~~~~~ 315 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++... ....... .+. . ...+. ...
T Consensus 148 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~ 218 (258)
T 3a28_C 148 FPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWE------QIDAELSKINGKPIGENFKEYS---SSI 218 (258)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHH------HHHHHHHHHHCCCTTHHHHHHH---TTC
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhh------hhhhhhccccCCchHHHHHHHH---hcC
Confidence 1345789999999999999998874 899999999999875211 1000000 000 0 00000 000
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
....+.+++|+|.+++.++...... ..|+++++.+|..+
T Consensus 219 p~~r~~~p~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~~~ 257 (258)
T 3a28_C 219 ALGRPSVPEDVAGLVSFLASENSNY----------VTGQVMLVDGGMLY 257 (258)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSSSCC
T ss_pred CCCCccCHHHHHHHHHHHhCcccCC----------CCCCEEEECCCEec
Confidence 1123788999999999998755421 34489999887543
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=200.76 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=159.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEE-ECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGL-DNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+|+||||||+|+||++++++|+++|++|+++ +|+.. .......+.. ...++.++.+|++|.++++++++..
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAK----AAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDA 76 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH----HHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999995 66321 1111111111 1346889999999999999988754
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA----NPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. + .++||++||...+..
T Consensus 77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~----------- 144 (244)
T 1edo_A 77 WGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASVVGLIG----------- 144 (244)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHC-----------
T ss_pred cCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCEEEEECChhhcCC-----------
Confidence 679999999975432 233456678999999999998887653 4 349999999755321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
..+...|+.+|.+.+.+++.++.++ |+++++++||.|+++..... ...+...+.... + ...+
T Consensus 145 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~--~----------~~~~ 209 (244)
T 1edo_A 145 -NIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL--GEDMEKKILGTI--P----------LGRT 209 (244)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT--CHHHHHHHHTSC--T----------TCSC
T ss_pred -CCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc--ChHHHHHHhhcC--C----------CCCC
Confidence 1346789999999999999998874 89999999999998732211 111222222211 1 1237
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
++++|+|++++.++..+.... ..|++|++.++.
T Consensus 210 ~~~~dva~~~~~l~~~~~~~~---------~~G~~~~v~gG~ 242 (244)
T 1edo_A 210 GQPENVAGLVEFLALSPAASY---------ITGQAFTIDGGI 242 (244)
T ss_dssp BCHHHHHHHHHHHHHCSGGGG---------CCSCEEEESTTT
T ss_pred CCHHHHHHHHHHHhCCCccCC---------cCCCEEEeCCCc
Confidence 899999999999985433211 234899998764
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=199.64 Aligned_cols=216 Identities=16% Similarity=0.113 Sum_probs=159.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+.. ..+.++.+|++|.++++++++.+
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--------------~~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP--------------EGFLAVKCDITDTEQVEQAYKEIEET 84 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC--------------TTSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh--------------ccceEEEecCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999954321 13788999999999999888764
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+. ++||++||...+..
T Consensus 85 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~----------- 152 (253)
T 2nm0_A 85 HGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKK-GRVVLISSVVGLLG----------- 152 (253)
T ss_dssp TCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECCCCCCCC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEECchhhCCC-----------
Confidence 579999999975432 24567789999999999998887653 343 49999999765321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... ........+.... + ...+
T Consensus 153 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~--p----------~~~~ 217 (253)
T 2nm0_A 153 -SAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV--LTDEQRANIVSQV--P----------LGRY 217 (253)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC-----------CHHHHHTTC--T----------TCSC
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh--cCHHHHHHHHhcC--C----------CCCC
Confidence 1234689999999999999998885 7999999999998764221 0000111111111 1 1237
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+..+|+|++++.++...... ..|+.+.+.+|..
T Consensus 218 ~~p~dvA~~i~~l~s~~~~~----------~tG~~i~vdGG~~ 250 (253)
T 2nm0_A 218 ARPEEIAATVRFLASDDASY----------ITGAVIPVDGGLG 250 (253)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCccccC----------CcCcEEEECCccc
Confidence 88999999999998765432 2348999887754
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=204.46 Aligned_cols=230 Identities=11% Similarity=0.020 Sum_probs=164.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHH-hhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQA-LLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||++++++|+++|++|+++++... ......... .....++.++.+|++|.++++++++.+
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 99 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERN---DHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLA 99 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCH---HHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCch---HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999985321 111111111 112357999999999999999988865
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.. .+. ++||++||...+..
T Consensus 100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~---------- 168 (269)
T 3gk3_A 100 DFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRF-GRIVNIGSVNGSRG---------- 168 (269)
T ss_dssp HHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHC----------
T ss_pred HcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEeCChhhccC----------
Confidence 689999999975432 23445668999999999888888743 342 39999999665421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++..... .......... .......
T Consensus 169 --~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~------~~~~~~~~~~-------~~~~~~~ 233 (269)
T 3gk3_A 169 --AFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAV------PQDVLEAKIL-------PQIPVGR 233 (269)
T ss_dssp --CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-------------CCSG-------GGCTTSS
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhh------chhHHHHHhh-------hcCCcCC
Confidence 1346789999999999999998885 89999999999998754311 0111111111 1112234
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
+..++|+|++++.++...... ..|+++++.+|..++
T Consensus 234 ~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 234 LGRPDEVAALIAFLCSDDAGF----------VTGADLAINGGMHMS 269 (269)
T ss_dssp CBCHHHHHHHHHHHTSTTCTT----------CCSCEEEESTTSCCC
T ss_pred ccCHHHHHHHHHHHhCCCcCC----------eeCcEEEECCCEeCc
Confidence 678999999999998765431 345899999886543
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-24 Score=202.67 Aligned_cols=228 Identities=14% Similarity=0.041 Sum_probs=164.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+...... ........++.++.+|++|.++++++++.+
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 108 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAE---HLQKTYGVHSKAYKCNISDPKSVEETISQQEKD 108 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHH---HHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHHHhcCCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999654311111 111111347899999999999999988763
Q ss_pred --CccEEEEcccccCc------cccccChhHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAG----LVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~g----t~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ....++++..+++|+.| +.++++.+++.+. ++||++||...+...
T Consensus 109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~~~-------- 179 (279)
T 3ctm_A 109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGK-GSLIITSSISGKIVN-------- 179 (279)
T ss_dssp HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCCTTSCC---------
T ss_pred hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEECchHhccCC--------
Confidence 57999999997543 22334456789999999 5667777776664 499999997754210
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
...+...|+.+|++.|.+++.++.++ + ++++|+||.|.++...... ......+.... +. .
T Consensus 180 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~--p~----------~ 242 (279)
T 3ctm_A 180 --IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFAS--KDMKAKWWQLT--PL----------G 242 (279)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCC--HHHHHHHHHHS--TT----------C
T ss_pred --CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccC--hHHHHHHHHhC--Cc----------c
Confidence 01345789999999999999999884 6 9999999999887543111 11222221111 11 1
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.+++++|+|++++.++...... ..|+++++.+|..
T Consensus 243 ~~~~~~dvA~~~~~l~s~~~~~----------~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 243 REGLTQELVGGYLYLASNASTF----------TTGSDVVIDGGYT 277 (279)
T ss_dssp SCBCGGGTHHHHHHHHSGGGTT----------CCSCEEEESTTCC
T ss_pred CCcCHHHHHHHHHHHhCccccC----------ccCCEEEECCCee
Confidence 3788999999999998765422 2348999988753
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-24 Score=201.42 Aligned_cols=231 Identities=17% Similarity=0.116 Sum_probs=162.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ ......+ ...++.++.+|++|.++++++++.+
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES-----GGRALEQ--ELPGAVFILCDVTQEDDVKTLVSETIRR 79 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHH--HCTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHH--HhcCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999321 1111111 1235889999999999999988765
Q ss_pred --CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcc-cCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCKNA---NPQPAIVWASSSSV-YGLNTKVPFSEKD 242 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~~~---~~~~~~V~~SS~~v-~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. + .++||++||... ++.
T Consensus 80 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~---------- 148 (270)
T 1yde_A 80 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQ---------- 148 (270)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCHHHHHCC----------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-CCEEEEEcCccccCCC----------
Confidence 689999999975321 123446789999999999999888531 2 249999999653 321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCC----CChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRP----DMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
.....|+.+|.+.+.+++.++.+ +|+++++|+||.|+++.... ............... ++
T Consensus 149 ---~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~--p~-------- 215 (270)
T 1yde_A 149 ---AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQ--PL-------- 215 (270)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTS--TT--------
T ss_pred ---CCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcC--CC--------
Confidence 24568999999999999999877 48999999999999873110 000000000001111 11
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHH
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVS 371 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~ 371 (439)
..+...+|+|.+++.++..... ..|+.+++.+|..+.+.+...
T Consensus 216 --~r~~~p~dva~~v~~L~s~~~~-----------itG~~i~vdGG~~~~~~~~~~ 258 (270)
T 1yde_A 216 --GRMGQPAEVGAAAVFLASEANF-----------CTGIELLVTGGAELGYGCKAS 258 (270)
T ss_dssp --SSCBCHHHHHHHHHHHHHHCTT-----------CCSCEEEESTTTTSCC-----
T ss_pred --CCCcCHHHHHHHHHHHcccCCC-----------cCCCEEEECCCeecccCcCcc
Confidence 1257899999999998875322 334899999887666544443
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=199.72 Aligned_cols=209 Identities=12% Similarity=0.049 Sum_probs=159.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
+++|++|||||+|+||++++++|+++|++|++++|+.. +|++|.++++++++.+ ++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----------------------~D~~~~~~v~~~~~~~g~i 60 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-----------------------LDISDEKSVYHYFETIGAF 60 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-----------------------CCTTCHHHHHHHHHHHCSE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-----------------------cCCCCHHHHHHHHHHhCCC
Confidence 57899999999999999999999999999999998221 8999999999999876 68
Q ss_pred cEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDRTDQPAS 249 (439)
Q Consensus 176 d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~ 249 (439)
|+||||||.... ..+.++++..+++|+.|+.++++++.+... ..+||++||...+.. ..+..
T Consensus 61 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------~~~~~ 128 (223)
T 3uce_A 61 DHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKV------------VANTY 128 (223)
T ss_dssp EEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSC------------CTTCH
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccC------------CCCch
Confidence 999999997522 123455668899999999999999976421 138999999876531 23567
Q ss_pred hHHHHHHHHHHHHHHHHhHhC-CcEEEEeeccccCCCCCCCCh--HHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHH
Q 013602 250 LYAATKKAGEEIAHTYNHIYG-LSLTGLRFFTVYGPWGRPDMA--YFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDI 326 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~~~g-i~~~ilrpg~v~G~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dv 326 (439)
.|+.+|.+.+.+++.++.+++ +++++|+||.|.++....... ...+........+. ..+.+++|+
T Consensus 129 ~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~dv 196 (223)
T 3uce_A 129 VKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLPV------------GKVGEASDI 196 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHSTT------------CSCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCCC------------CCccCHHHH
Confidence 899999999999999999975 999999999999874432111 11122222222222 236789999
Q ss_pred HHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 327 a~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
|++++.++.... ..|+++++.+|..+
T Consensus 197 A~~~~~l~~~~~------------~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 197 AMAYLFAIQNSY------------MTGTVIDVDGGALL 222 (223)
T ss_dssp HHHHHHHHHCTT------------CCSCEEEESTTGGG
T ss_pred HHHHHHHccCCC------------CCCcEEEecCCeec
Confidence 999999987322 33489999887654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=203.76 Aligned_cols=211 Identities=16% Similarity=0.117 Sum_probs=148.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+ ......+.. ..++.++.+|++|.++++++++.+
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 99 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLD-----ALQETAAEI-GDDALCVPTDVTDPDSVRALFTATVEK 99 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHH-TSCCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH-----HHHHHHHHh-CCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999321 111111111 257899999999999999998865
Q ss_pred --CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHh----cCC-CCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKN----ANP-QPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~-~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+ .+. ..+||++||...+.
T Consensus 100 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~---------- 169 (272)
T 4dyv_A 100 FGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS---------- 169 (272)
T ss_dssp HSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS----------
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC----------
Confidence 78999999998533 123455678999999998888887643 321 23999999977642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
...+...|+.+|++.+.+++.++.++ |+++++|+||.|.++.... +..+..... ......
T Consensus 170 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----------~~~~~~~~~-----~~~~~~ 232 (272)
T 4dyv_A 170 --PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQK----------MKAGVPQAD-----LSIKVE 232 (272)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC------------------------------------
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhh----------hcccchhhh-----hccccc
Confidence 11346789999999999999998874 8999999999998874321 111100000 111223
Q ss_pred eeeeHHHHHHHHHHHHhhchhc
Q 013602 319 DFTYIDDIVKGCLAALDTAEKS 340 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~ 340 (439)
.+..++|+|++++.++..+...
T Consensus 233 ~~~~pedvA~~v~fL~s~~~~~ 254 (272)
T 4dyv_A 233 PVMDVAHVASAVVYMASLPLDA 254 (272)
T ss_dssp ---CHHHHHHHHHHHHHSCTTS
T ss_pred CCCCHHHHHHHHHHHhCCCCcC
Confidence 4789999999999999877653
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-24 Score=200.84 Aligned_cols=228 Identities=12% Similarity=0.082 Sum_probs=161.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ .......+.....++.++.+|++|.++++++++.+
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAE----ACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGEL 102 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999998331 11111111112236889999999999999888754
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCC---CCeEEEecCCcccCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANP---QPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~---~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. .++||++||...+...
T Consensus 103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~------- 175 (276)
T 2b4q_A 103 SARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAM------- 175 (276)
T ss_dssp CSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCC-------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCC-------
Confidence 689999999975432 2344567899999999988777764 3342 1499999998765321
Q ss_pred CCCCCCCCC-hHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 241 KDRTDQPAS-LYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 241 ~~~~~~p~~-~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.... .|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... ........+......+.
T Consensus 176 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~p~--------- 239 (276)
T 2b4q_A 176 -----GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRH--IANDPQALEADSASIPM--------- 239 (276)
T ss_dssp -----CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHH--HHHCHHHHHHHHHTSTT---------
T ss_pred -----CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhh--cchhHHHHHHhhcCCCC---------
Confidence 2234 89999999999999998874 8999999999998874320 00001111111001111
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 240 -~r~~~p~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~ 274 (276)
T 2b4q_A 240 -GRWGRPEEMAALAISLAGTAGAY----------MTGNVIPIDGGF 274 (276)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred -CCcCCHHHHHHHHHHHhCccccC----------CCCCEEEeCCCc
Confidence 23688999999999998765421 334899988764
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-24 Score=201.55 Aligned_cols=232 Identities=13% Similarity=0.031 Sum_probs=163.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+... .......+.. ...++.++.+|++|.++++++++.+
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE---SAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH---HHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999984321 1111111111 1346889999999999998888754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+.- ..++||++||...+.. ..
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-----------~~ 172 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK-----------AV 172 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS-----------SC
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccC-----------CC
Confidence 679999999975432 2345567899999999999999998761 1349999999765421 10
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC-------CC--hHHHHHHHHHcCCCCceeecCCC
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP-------DM--AYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~-------~~--~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
.+...|+.+|++.+.+++.++.++ |+++++|+||.|.++.... .. ........+......
T Consensus 173 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 244 (283)
T 1g0o_A 173 PKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWS-------- 244 (283)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSC--------
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCC--------
Confidence 136789999999999999998874 8999999999998862110 00 000111111110001
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
....+.+.+|+|.+++.++...... ..|+++++.+|.
T Consensus 245 --p~~r~~~p~dvA~~v~~l~s~~~~~----------itG~~i~vdgG~ 281 (283)
T 1g0o_A 245 --PLRRVGLPIDIARVVCFLASNDGGW----------VTGKVIGIDGGA 281 (283)
T ss_dssp --TTCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred --CCCCCcCHHHHHHHHHHHhCccccC----------cCCCEEEeCCCc
Confidence 1123678999999999998765421 334899988764
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=198.53 Aligned_cols=226 Identities=14% Similarity=0.098 Sum_probs=165.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.. . ...........++.++.+|++|+++++++++.-++|
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~----~-~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iD 81 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP----D-ETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFD 81 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC----H-HHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH----H-HHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCC
Confidence 78999999999999999999999999999999999542 1 111111122357889999999999999999888899
Q ss_pred EEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCC
Q 013602 177 HVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPA 248 (439)
Q Consensus 177 ~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~ 248 (439)
++|||||+... ..++++++..+++|+.|+..+.+++. +.+...+||++||...+. .....
T Consensus 82 iLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~------------g~~~~ 149 (247)
T 4hp8_A 82 ILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ------------GGIRV 149 (247)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCSSC
T ss_pred EEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC------------CCCCC
Confidence 99999998543 23456678899999999888887653 333234999999976432 11235
Q ss_pred ChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHH
Q 013602 249 SLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDD 325 (439)
Q Consensus 249 ~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~D 325 (439)
..|+.||.+...+++.++.++ ||++++|.||.|..|.......-......+.+..+... +-..+|
T Consensus 150 ~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR------------~g~pee 217 (247)
T 4hp8_A 150 PSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAILERIPAGR------------WGHSED 217 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTSS------------CBCTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCCC------------CcCHHH
Confidence 689999999999999999985 89999999999977632100000122333444444333 345699
Q ss_pred HHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 326 IVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 326 va~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+|.+++.++...... ..|+++.+.+|
T Consensus 218 iA~~v~fLaSd~a~~----------iTG~~i~VDGG 243 (247)
T 4hp8_A 218 IAGAAVFLSSAAADY----------VHGAILNVDGG 243 (247)
T ss_dssp HHHHHHHHTSGGGTT----------CCSCEEEESTT
T ss_pred HHHHHHHHhCchhcC----------CcCCeEEECcc
Confidence 999999987655432 34588888765
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=202.75 Aligned_cols=232 Identities=13% Similarity=0.126 Sum_probs=165.0
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh---hhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL---LERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+. ....++.++.+|++|.++++++++.
T Consensus 5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (265)
T 3lf2_A 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGER----LRAAESALRQRFPGARLFASVCDVLDALQVRAFAEA 80 (265)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHH
Confidence 3678999999999999999999999999999999994321 11111111 1123589999999999999998876
Q ss_pred c-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
+ ++|+||||||..... .+.++++..+++|+.|+.++++++.... ...+||++||...+.
T Consensus 81 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 151 (265)
T 3lf2_A 81 CERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ--------- 151 (265)
T ss_dssp HHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS---------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC---------
Confidence 5 789999999975432 2345567899999999999999885321 123899999977642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC--------CChHHHHHHHHHcCCCCceee
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP--------DMAYFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~ 309 (439)
.......|+.+|.+.+.+++.++.++ |+++++|+||.|.+|.... ......+...+.....++.
T Consensus 152 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-- 226 (265)
T 3lf2_A 152 ---PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPL-- 226 (265)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTTCTT--
T ss_pred ---CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccCCCc--
Confidence 11346789999999999999999885 8999999999998762110 0001111111111111121
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
..+..++|+|.+++.++...... ..|+++++.+|..
T Consensus 227 --------~r~~~pedvA~~v~fL~s~~~~~----------itG~~i~vdGG~~ 262 (265)
T 3lf2_A 227 --------GRLGKPIEAARAILFLASPLSAY----------TTGSHIDVSGGLS 262 (265)
T ss_dssp --------CSCBCHHHHHHHHHHHHSGGGTT----------CCSEEEEESSSCC
T ss_pred --------CCCcCHHHHHHHHHHHhCchhcC----------cCCCEEEECCCCc
Confidence 23678999999999998755432 3458999987643
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=204.40 Aligned_cols=236 Identities=10% Similarity=0.078 Sum_probs=165.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh---hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+.. ....+.++.+|++|.++++++++..
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 83 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREEN----VNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKY 83 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhc
Confidence 678999999999999999999999999999999994321 111111111 1245788999999999999999876
Q ss_pred -CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||...... +.++++..+++|+.|+.++++++. +.+ .++||++||...+. +
T Consensus 84 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------~ 150 (267)
T 3t4x_A 84 PKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERK-EGRVIFIASEAAIM------------P 150 (267)
T ss_dssp CCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-EEEEEEECCGGGTS------------C
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEEcchhhcc------------C
Confidence 6899999999854322 234456789999999777766653 344 24999999977652 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCce-------eecCCCC
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPI-------FESPDHG 314 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~~ 314 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.. ..+............ .......
T Consensus 151 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
T 3t4x_A 151 SQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGV------ETMLNSLYPNEQLTIEEAEKRFMKENRPT 224 (267)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHH------HHHHHHSSTTSCCCHHHHHHHHHHHHCTT
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccH------HHHHhhcCcccCCCHHHHHHHHhhccCCc
Confidence 2356789999999999999999885 69999999999987621 111111110000000 0000000
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
.....+.+++|+|++++.++...... ..|+++++.+|...+
T Consensus 225 ~~~~r~~~pedvA~~v~fL~s~~~~~----------itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 225 SIIQRLIRPEEIAHLVTFLSSPLSSA----------INGSALRIDGGLVRS 265 (267)
T ss_dssp CSSCSCBCTHHHHHHHHHHHSGGGTT----------CCSCEEEESTTCSCS
T ss_pred ccccCccCHHHHHHHHHHHcCccccC----------ccCCeEEECCCcccc
Confidence 11235788999999999998755432 345899998886554
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-25 Score=200.63 Aligned_cols=192 Identities=18% Similarity=0.137 Sum_probs=147.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-CccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~d~V 178 (439)
|+||||||+|+||++++++|+++ +|++++|+.+ ......... .. .++.+|++|.++++++++.. ++|+|
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~-----~~~~~~~~~--~~-~~~~~D~~~~~~~~~~~~~~~~id~v 70 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAG-----ALAELAREV--GA-RALPADLADELEAKALLEEAGPLDLL 70 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHH-----HHHHHHHHH--TC-EECCCCTTSHHHHHHHHHHHCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHH-----HHHHHHHhc--cC-cEEEeeCCCHHHHHHHHHhcCCCCEE
Confidence 58999999999999999999998 9999999321 111111111 12 88999999999999999831 45999
Q ss_pred EEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 179 MHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 179 i~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|||||..... .+.++++..+++|+.|+.++++++++.+. ++||++||...|.. ..+...|+.+
T Consensus 71 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~iv~~sS~~~~~~------------~~~~~~Y~~s 137 (207)
T 2yut_A 71 VHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKG-ARAVFFGAYPRYVQ------------VPGFAAYAAA 137 (207)
T ss_dssp EECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEE-EEEEEECCCHHHHS------------STTBHHHHHH
T ss_pred EECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCC-cEEEEEcChhhccC------------CCCcchHHHH
Confidence 9999975432 23456678999999999999999966553 49999999887632 1356789999
Q ss_pred HHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331 (439)
Q Consensus 255 K~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 331 (439)
|.+.|.+++.++.+ .|++++++|||.++++... + .+...+.+++++|+|++++
T Consensus 138 K~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~--------------~----------~~~~~~~~~~~~dva~~~~ 193 (207)
T 2yut_A 138 KGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA--------------P----------LGGPPKGALSPEEAARKVL 193 (207)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG--------------G----------GTSCCTTCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc--------------c----------cCCCCCCCCCHHHHHHHHH
Confidence 99999999999887 4999999999999987310 0 1122356899999999999
Q ss_pred HHHhhch
Q 013602 332 AALDTAE 338 (439)
Q Consensus 332 ~~l~~~~ 338 (439)
.+++.+.
T Consensus 194 ~~~~~~~ 200 (207)
T 2yut_A 194 EGLFREP 200 (207)
T ss_dssp HHHC--C
T ss_pred HHHhCCC
Confidence 9998655
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=207.45 Aligned_cols=234 Identities=11% Similarity=0.052 Sum_probs=159.6
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.+++|+||||||+|+||++++++|+++|++|++++|.....+. ......+.. ...++.++.+|++|.++++++++.+
T Consensus 8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 8 DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDT-ANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHH-HHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHH-HHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999884321111 111111111 1346889999999999999998865
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++...- ..++||++||...+..
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~------------ 154 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAY------------ 154 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHH------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccC------------
Confidence 689999999975432 2344556889999999999999997641 1239999999766431
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
......|+.+|.+.+.+++.++.++ |+++++|+||.|..+... ..........+ ........+.
T Consensus 155 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~----------~~~~~~~~~~~---~~~~~~~r~~ 221 (262)
T 3ksu_A 155 TGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFY----------GQETKESTAFH---KSQAMGNQLT 221 (262)
T ss_dssp HCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHH----------TCC---------------CCCCSC
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccc----------ccCchHHHHHH---HhcCcccCCC
Confidence 1345789999999999999999985 899999999999765210 00000000111 0112223467
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccH
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPV 366 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~ 366 (439)
.++|+|.+++.++.. ... ..|+++++.+|.....
T Consensus 222 ~pedvA~~v~~L~s~-~~~----------itG~~i~vdGg~~~~~ 255 (262)
T 3ksu_A 222 KIEDIAPIIKFLTTD-GWW----------INGQTIFANGGYTTRE 255 (262)
T ss_dssp CGGGTHHHHHHHHTT-TTT----------CCSCEEEESTTCCCC-
T ss_pred CHHHHHHHHHHHcCC-CCC----------ccCCEEEECCCccCCC
Confidence 889999999999876 321 3458999988764443
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=204.15 Aligned_cols=226 Identities=10% Similarity=0.057 Sum_probs=163.2
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.+.+|+||||||+|+||++++++|+++|++|++++|+.. .......+.. ....+.++.+|++|.++++++++..
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 101 (271)
T 4iin_A 26 QFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNA----EVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTI 101 (271)
T ss_dssp CCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 367899999999999999999999999999999999432 1111111111 2347899999999999999988765
Q ss_pred -----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 102 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~--------- 171 (271)
T 4iin_A 102 VQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRF-GSVVNVASIIGER--------- 171 (271)
T ss_dssp HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHH---------
T ss_pred HHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCC-CEEEEEechhhcC---------
Confidence 689999999985432 2344567899999999988887764 3343 3999999966542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
...+...|+.+|++.+.+++.++.+ .|+++++|+||.|.++.... +..... ..+ ......
T Consensus 172 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~------~~~~~~-----~~~---~~~~~~ 234 (271)
T 4iin_A 172 ---GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNAN------LKDELK-----ADY---VKNIPL 234 (271)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-----------------------C---GGGCTT
T ss_pred ---CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhh------hcHHHH-----HHH---HhcCCc
Confidence 1135679999999999999999888 48999999999998774321 100000 000 011122
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+.+++|+|++++.++...... ..|+++++.+|-
T Consensus 235 ~~~~~p~dvA~~i~~l~s~~~~~----------itG~~i~vdGG~ 269 (271)
T 4iin_A 235 NRLGSAKEVAEAVAFLLSDHSSY----------ITGETLKVNGGL 269 (271)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred CCCcCHHHHHHHHHHHhCCCcCC----------CcCCEEEeCCCe
Confidence 34788999999999998765432 345899998764
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.1e-24 Score=196.37 Aligned_cols=227 Identities=12% Similarity=0.047 Sum_probs=162.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+. ..+...+.. ...++.++++|++|+++++++++.+
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~----~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDR----LNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999994321 111111111 2357889999999999999988765
Q ss_pred ---CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|++|||||+... ..++++++..+++|+.|+.++.+++. +.+. .+||++||...+-
T Consensus 81 ~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~IVnisS~~g~~---------- 149 (254)
T 4fn4_A 81 TYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGK-GVIVNTASIAGIR---------- 149 (254)
T ss_dssp HHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTC----------
T ss_pred HcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEechhhcC----------
Confidence 78999999997432 23455677899999999877777663 4443 3999999976431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC-hHHHHHHHHHcC-CCCceeecCCCCcc
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM-AYFFFTRDILNR-KSIPIFESPDHGTV 316 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~-~~~~~~~~~~~g-~~~~~~~~~~~~~~ 316 (439)
.......|+.+|.+...+++.++.++ ||++++|.||.|-.|-..... .-........+. .+..
T Consensus 150 --~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~---------- 217 (254)
T 4fn4_A 150 --GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSS---------- 217 (254)
T ss_dssp --SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTTCC----------
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCCCC----------
Confidence 11345789999999999999999985 899999999999876322111 001111111111 1111
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
-+...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 218 --R~g~pediA~~v~fLaSd~a~~----------iTG~~i~VDGG~ 251 (254)
T 4fn4_A 218 --RLAEPEDIANVIVFLASDEASF----------VNGDAVVVDGGL 251 (254)
T ss_dssp --CCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred --CCcCHHHHHHHHHHHhCchhcC----------CcCCEEEeCCCc
Confidence 1355799999999998655432 345899987764
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=206.72 Aligned_cols=225 Identities=17% Similarity=0.051 Sum_probs=149.9
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh---hcCCeEEEEcccCCHHHHHHhhcc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
.+.+|+||||||+||||.+++++|+++|++|++++|+.+. ......... ....+.++.+|++|.++++++++.
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDS----IDKALATLEAEGSGPEVMGVQLDVASREGFKMAADE 80 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 3678999999999999999999999999999999994321 111111111 122789999999999999999886
Q ss_pred c-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC---------CCCeEEEecCCcccCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN---------PQPAIVWASSSSVYGLNT 234 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---------~~~~~V~~SS~~v~g~~~ 234 (439)
+ ++|+||||||+.... .+.++++..+++|+.|+.++++++.... ..++||++||...+..
T Consensus 81 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~-- 158 (319)
T 3ioy_A 81 VEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLA-- 158 (319)
T ss_dssp HHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCC--
T ss_pred HHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccC--
Confidence 5 689999999975432 2344566899999999999988875431 1338999999776532
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecC
Q 013602 235 KVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 235 ~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
......|+.||.+.+.+++.++.++ |+++++|+||.|.++.........................
T Consensus 159 ----------~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~-- 226 (319)
T 3ioy_A 159 ----------AGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVE-- 226 (319)
T ss_dssp ----------CSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-----------------------------
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhcccccchhHHHHH--
Confidence 1345789999999999998887764 8999999999998875432111111111000000000000
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
.-.......++++|+|++++.+++...
T Consensus 227 ~~~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 227 RLAGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp --CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 000111122789999999999988643
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-25 Score=198.85 Aligned_cols=178 Identities=13% Similarity=0.165 Sum_probs=143.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-CccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~d~V 178 (439)
|+||||||+|+||++++++|+ +|++|++++|+.. ++.+|++|.+++++++++. ++|+|
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~~d~v 62 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG--------------------DVTVDITNIDSIKKMYEQVGKVDAI 62 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS--------------------SEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc--------------------ceeeecCCHHHHHHHHHHhCCCCEE
Confidence 489999999999999999999 9999999999332 4789999999999999875 57999
Q ss_pred EEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChH
Q 013602 179 MHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNA---NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLY 251 (439)
Q Consensus 179 i~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~---~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y 251 (439)
|||||...... +.+++...+++|+.++.++++++.+. + ++||++||...+.. ..+...|
T Consensus 63 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~iv~~sS~~~~~~------------~~~~~~Y 128 (202)
T 3d7l_A 63 VSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK--GSFTLTTGIMMEDP------------IVQGASA 128 (202)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE--EEEEEECCGGGTSC------------CTTCHHH
T ss_pred EECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC--CEEEEEcchhhcCC------------CCccHHH
Confidence 99999753321 22344578899999999999999876 3 39999999776431 1345789
Q ss_pred HHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHH
Q 013602 252 AATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a 329 (439)
+.+|.+.|.+++.++.++ |++++++|||.++++... . + .....+++++++|+|++
T Consensus 129 ~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~-----------~--~----------~~~~~~~~~~~~dva~~ 185 (202)
T 3d7l_A 129 AMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK-----------L--E----------PFFEGFLPVPAAKVARA 185 (202)
T ss_dssp HHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH-----------H--G----------GGSTTCCCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchhh-----------h--h----------hhccccCCCCHHHHHHH
Confidence 999999999999998764 999999999999987310 0 0 11123468999999999
Q ss_pred HHHHHh
Q 013602 330 CLAALD 335 (439)
Q Consensus 330 ~~~~l~ 335 (439)
++.++.
T Consensus 186 ~~~~~~ 191 (202)
T 3d7l_A 186 FEKSVF 191 (202)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 998873
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=204.14 Aligned_cols=226 Identities=12% Similarity=0.010 Sum_probs=163.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEE-CCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHH---------
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLD-NFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMA--------- 164 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~--------- 164 (439)
+.+|+||||||+|+||+++++.|+++|++|++++ |+.+ .......+. ....++.++.+|++|.+
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 119 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAA----EANALSATLNARRPNSAITVQADLSNVATAPVSGADG 119 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHHHHHHHHHSTTCEEEEECCCSSSCBCC------
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHH----HHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccc
Confidence 6789999999999999999999999999999999 8332 111111111 11347899999999999
Q ss_pred --------HHHHhhccc-----CccEEEEcccccCcc----cc--------------ccChhHHHHHHHHHHHHHHHHHH
Q 013602 165 --------LLKKLFDVV-----SFTHVMHLAAQAGVR----YA--------------MQNPNSYVHSNIAGLVSLLEVCK 213 (439)
Q Consensus 165 --------~~~~~~~~~-----~~d~Vi~~Ag~~~~~----~~--------------~~~~~~~~~~Nv~gt~~ll~~~~ 213 (439)
+++++++.+ ++|+||||||..... .+ .++++..+++|+.|+.++++++.
T Consensus 120 ~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 199 (328)
T 2qhx_A 120 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 199 (328)
T ss_dssp -CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888765 689999999975432 12 34456789999999999888875
Q ss_pred h----cCC-----CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccc
Q 013602 214 N----ANP-----QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTV 281 (439)
Q Consensus 214 ~----~~~-----~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v 281 (439)
. .+. .++||++||...+.. ..+...|+.+|++.+.+++.++.++ |+++++|+||.|
T Consensus 200 ~~m~~~~~~~~~~~g~IV~isS~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v 267 (328)
T 2qhx_A 200 HRVAGTPAKHRGTNYSIINMVDAMTNQP------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 267 (328)
T ss_dssp HHHHHSCGGGSCSCEEEEEECCTTTTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred HHHHhcCCcCCCCCcEEEEECchhhccC------------CCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcc
Confidence 3 220 249999999876431 1345789999999999999998885 899999999999
Q ss_pred cCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 282 ~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.++. . . . ......+....+.. ..+..++|+|++++.++...... ..|+++++.+|
T Consensus 268 ~T~~-~-~-~-~~~~~~~~~~~p~~-----------~r~~~pedvA~~v~~l~s~~~~~----------itG~~i~vdGG 322 (328)
T 2qhx_A 268 VLVD-D-M-P-PAVWEGHRSKVPLY-----------QRDSSAAEVSDVVIFLCSSKAKY----------ITGTCVKVDGG 322 (328)
T ss_dssp SCCC-C-S-C-HHHHHHHHTTCTTT-----------TSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred cCCc-c-c-c-HHHHHHHHhhCCCC-----------CCCCCHHHHHHHHHHHhCccccC----------ccCcEEEECCC
Confidence 9886 2 1 1 22333333322211 02567899999999998754321 34589999877
Q ss_pred Cc
Q 013602 362 SP 363 (439)
Q Consensus 362 ~~ 363 (439)
..
T Consensus 323 ~~ 324 (328)
T 2qhx_A 323 YS 324 (328)
T ss_dssp GG
T ss_pred cc
Confidence 54
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=198.83 Aligned_cols=202 Identities=12% Similarity=0.060 Sum_probs=146.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
|.+|+||||||+|+||++++++|+++| ++|++++|+.+... . ..+ ....++.++.+|++|.++++++++.+
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~----~-l~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT----E-LKS-IKDSRVHVLPLTVTCDKSLDTFVSKVG 74 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH----H-HHT-CCCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHH----H-HHh-ccCCceEEEEeecCCHHHHHHHHHHHH
Confidence 357899999999999999999999999 99999999543221 1 111 12457899999999999999988854
Q ss_pred ------CccEEEEcccccC-c----cccccChhHHHHHHHHHHHHHHHHHHhc----------CC----CCeEEEecCCc
Q 013602 174 ------SFTHVMHLAAQAG-V----RYAMQNPNSYVHSNIAGLVSLLEVCKNA----------NP----QPAIVWASSSS 228 (439)
Q Consensus 174 ------~~d~Vi~~Ag~~~-~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~----------~~----~~~~V~~SS~~ 228 (439)
++|+||||||... . ..+.++++..+++|+.++.++++++... +. .++||++||..
T Consensus 75 ~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~ 154 (250)
T 1yo6_A 75 EIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL 154 (250)
T ss_dssp HHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGG
T ss_pred HhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCc
Confidence 6799999999765 2 1233455688999999999988887533 30 24999999976
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCC
Q 013602 229 VYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSI 305 (439)
Q Consensus 229 v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~ 305 (439)
.+..... + .....+...|+.+|++.+.+++.++.++ |+++++|+||.|.++....
T Consensus 155 ~~~~~~~----~-~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----------------- 212 (250)
T 1yo6_A 155 GSITDNT----S-GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK----------------- 212 (250)
T ss_dssp GCSTTCC----S-TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------------
T ss_pred cccCCcc----c-ccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC-----------------
Confidence 6532211 1 1111356789999999999999998885 8999999999998763210
Q ss_pred ceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 306 PIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 306 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
..+++.+|+|++++.++....
T Consensus 213 ------------~~~~~~~~~a~~~~~~~~~~~ 233 (250)
T 1yo6_A 213 ------------NAALTVEQSTAELISSFNKLD 233 (250)
T ss_dssp ------------------HHHHHHHHHHHTTCC
T ss_pred ------------CCCCCHHHHHHHHHHHHhccc
Confidence 025778999999999998664
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-24 Score=198.65 Aligned_cols=223 Identities=16% Similarity=0.079 Sum_probs=160.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+|++|||||+|+||++++++|+++| +.|++.+|+.+ ......+.. ..++.++.+|++|.++++++++.+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~-----~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEA-----PLKKLKEKY-GDRFFYVVGDITEDSVLKQLVNAAVKG 75 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHH-----HHHHHHHHH-GGGEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHH-----HHHHHHHHh-CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999985 78999988321 111111111 357899999999999999998865
Q ss_pred --CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++ ++.+ ++||++||...+.
T Consensus 76 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~~~----------- 142 (254)
T 3kzv_A 76 HGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDACNM----------- 142 (254)
T ss_dssp HSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCCCC-----------
T ss_pred cCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchhcc-----------
Confidence 78999999998533 1234556789999999999998887 4544 3999999977643
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh-CCcEEEEeeccccCCCCCCCC-------hHHHHHHHHHcCCCCceeecCCCC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTGLRFFTVYGPWGRPDM-------AYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~-gi~~~ilrpg~v~G~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
...+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... ........+....+
T Consensus 143 -~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 211 (254)
T 3kzv_A 143 -YFSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKE---------- 211 (254)
T ss_dssp -SSCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHT----------
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHh----------
Confidence 12356799999999999999999885 899999999999987543110 01111222211111
Q ss_pred cceeeeeeHHHHHHHHHHHHhhch-hccCCCCCccCCCCCcEEEecCCCc
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAE-KSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
...+.+++|+|.+++.++.... .. ..|+.+++.+++.
T Consensus 212 --~~r~~~p~dva~~v~~L~s~~~~~~----------itG~~i~vdg~~~ 249 (254)
T 3kzv_A 212 --NNQLLDSSVPATVYAKLALHGIPDG----------VNGQYLSYNDPAL 249 (254)
T ss_dssp --TC----CHHHHHHHHHHHHHCCCGG----------GTTCEEETTCGGG
T ss_pred --cCCcCCcccHHHHHHHHHhhcccCC----------CCccEEEecCccc
Confidence 1236778999999999987662 22 2348898877653
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=199.81 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=163.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCC----HHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDIND----MALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d----~~~~~~~~ 170 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.. ........+. .....+.++.+|++| .+++++++
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~---~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~ 97 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSA---EAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEII 97 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCH---HHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHH
Confidence 67899999999999999999999999999999999541 1111111111 123478899999999 99998888
Q ss_pred ccc-----CccEEEEcccccCcc--------------ccccChhHHHHHHHHHHHHHHHHHHhcCC---------CCeEE
Q 013602 171 DVV-----SFTHVMHLAAQAGVR--------------YAMQNPNSYVHSNIAGLVSLLEVCKNANP---------QPAIV 222 (439)
Q Consensus 171 ~~~-----~~d~Vi~~Ag~~~~~--------------~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~---------~~~~V 222 (439)
+.+ ++|+||||||..... .+.++++..+++|+.|+.++++++..... ..+||
T Consensus 98 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv 177 (288)
T 2x9g_A 98 NSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIV 177 (288)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEE
T ss_pred HHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEE
Confidence 754 679999999975422 22334567899999999999888764321 23999
Q ss_pred EecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHH
Q 013602 223 WASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDI 299 (439)
Q Consensus 223 ~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~ 299 (439)
++||...+.. ..+...|+.+|++.+.+++.++.++ |+++++|+||.|+++. . .. ......+
T Consensus 178 ~isS~~~~~~------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~~--~~~~~~~ 241 (288)
T 2x9g_A 178 NLCDAMVDQP------------CMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-MG--EEEKDKW 241 (288)
T ss_dssp EECCTTTTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-SC--HHHHHHH
T ss_pred EEecccccCC------------CCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-cC--hHHHHHH
Confidence 9999876531 1346789999999999999998885 8999999999999986 2 11 1122222
Q ss_pred HcCCCCceeecCCCCcceeee-eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 300 LNRKSIPIFESPDHGTVARDF-TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 300 ~~g~~~~~~~~~~~~~~~~~~-i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
....+.. .+ ...+|+|.+++.++...... ..|+.+++.+|..
T Consensus 242 ~~~~p~~------------r~~~~pedvA~~v~~l~s~~~~~----------itG~~i~vdGG~~ 284 (288)
T 2x9g_A 242 RRKVPLG------------RREASAEQIADAVIFLVSGSAQY----------ITGSIIKVDGGLS 284 (288)
T ss_dssp HHTCTTT------------SSCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred HhhCCCC------------CCCCCHHHHHHHHHHHhCccccC----------ccCCEEEECcchh
Confidence 2222111 13 67899999999998754322 3458898877643
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-24 Score=200.30 Aligned_cols=227 Identities=14% Similarity=0.076 Sum_probs=158.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.++|++|||||+|+||++++++|+++|++|++.++.... ......... .....+.++.+|++|.++++++++.+
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAA---AAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999998663321 111111111 12357889999999999999998865
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||+..... +.++++..+++|+.|+.++++++.+.. ...+||++||...+.. .
T Consensus 102 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~ 169 (267)
T 3u5t_A 102 AFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLL------------H 169 (267)
T ss_dssp HHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHC------------C
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccC------------C
Confidence 7899999999854322 234456789999999999999886542 1239999999765421 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.....|+.+|++.+.+++.++.++ |+++++|+||.|..+...... .......+.... ....+..
T Consensus 170 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~------------p~~r~~~ 236 (267)
T 3u5t_A 170 PSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGK-SDEVRDRFAKLA------------PLERLGT 236 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC------------CHHHHHTSS------------TTCSCBC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccC-CHHHHHHHHhcC------------CCCCCcC
Confidence 345789999999999999999985 899999999999877432100 001111122221 1223678
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
++|+|++++.++...... ..|+++++.+|
T Consensus 237 pedvA~~v~~L~s~~~~~----------itG~~i~vdGG 265 (267)
T 3u5t_A 237 PQDIAGAVAFLAGPDGAW----------VNGQVLRANGG 265 (267)
T ss_dssp HHHHHHHHHHHHSTTTTT----------CCSEEEEESSS
T ss_pred HHHHHHHHHHHhCccccC----------ccCCEEEeCCC
Confidence 999999999998754432 34589998765
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=205.59 Aligned_cols=227 Identities=14% Similarity=0.050 Sum_probs=164.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+......... ......+.++.+|++|.++++++++.+
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRI---IASGGTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHH---HHTTCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH---HhcCCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999665433222211 112457899999999999998888754
Q ss_pred -CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+. +
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~Iv~isS~~~~~------------~ 174 (275)
T 4imr_A 108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKW-GRVVSIGSINQLR------------P 174 (275)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS------------C
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECCHHhCC------------C
Confidence 689999999975432 2344566889999999999988873 3443 3999999977653 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCCh-HHHHHHHHHcCC-CCceeecCCCCcceee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMA-YFFFTRDILNRK-SIPIFESPDHGTVARD 319 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~-~~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.||++.+.+++.++.++ |+++++|+||.|.++....... .......+.... +. .-
T Consensus 175 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~------------~r 242 (275)
T 4imr_A 175 KSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLNWM------------GR 242 (275)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHSTT------------CS
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhcCcc------------CC
Confidence 1345679999999999999999885 8999999999998762110000 001111111111 11 12
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|+|.+++.++...... ..|+++++.+|
T Consensus 243 ~~~pedvA~~v~fL~s~~a~~----------itG~~i~vdGG 274 (275)
T 4imr_A 243 AGRPEEMVGAALFLASEACSF----------MTGETIFLTGG 274 (275)
T ss_dssp CBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESSC
T ss_pred CcCHHHHHHHHHHHcCcccCC----------CCCCEEEeCCC
Confidence 566899999999998765432 34589998765
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=193.32 Aligned_cols=213 Identities=15% Similarity=0.162 Sum_probs=158.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
.|+||||||+++||+++++.|+++|++|++.+|+. ...........++.++++|++|+++++++++.+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~-------~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g 74 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDE-------KRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQ 74 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-------HHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCH-------HHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 38999999999999999999999999999999932 111111223457899999999999999888765
Q ss_pred CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|++|||||..... .+.++++..+++|+.|+..+.+++. +.+ .+||++||...+. ..
T Consensus 75 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~--G~IInisS~~~~~------------~~ 140 (247)
T 3ged_A 75 RIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK--GRIINIASTRAFQ------------SE 140 (247)
T ss_dssp CCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGTS------------CC
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CcEEEEeeccccc------------CC
Confidence 789999999975432 2345667899999999888877764 333 3999999976532 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeH
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYI 323 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v 323 (439)
.....|+.||.+.+.+++.++.++ |+++++|.||.|-.+... .+........+... +...
T Consensus 141 ~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~------~~~~~~~~~~Pl~R------------~g~p 202 (247)
T 3ged_A 141 PDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQ------EFTQEDCAAIPAGK------------VGTP 202 (247)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---------CCHHHHHTSTTSS------------CBCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcH------HHHHHHHhcCCCCC------------CcCH
Confidence 235689999999999999999986 799999999999766432 11122222222222 4567
Q ss_pred HHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 324 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+|+|.+++.++.. .- ..|+++.+.+|-
T Consensus 203 ediA~~v~fL~s~-~~-----------iTG~~i~VDGG~ 229 (247)
T 3ged_A 203 KDISNMVLFLCQQ-DF-----------ITGETIIVDGGM 229 (247)
T ss_dssp HHHHHHHHHHHHC-SS-----------CCSCEEEESTTG
T ss_pred HHHHHHHHHHHhC-CC-----------CCCCeEEECcCH
Confidence 9999999999863 22 345899988763
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=195.45 Aligned_cols=230 Identities=15% Similarity=0.099 Sum_probs=158.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
+|+||||||+|+||++++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.++++++++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDAT----AKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL 77 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999994321 111111111 1246889999999999999988754
Q ss_pred -CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+..++||++||...+..
T Consensus 78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 145 (256)
T 1geg_A 78 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVG------------ 145 (256)
T ss_dssp TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC------------
Confidence 679999999975432 22345567999999998888877653 331239999999765321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHc--CC--C--CceeecCCCCc
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILN--RK--S--IPIFESPDHGT 315 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~--g~--~--~~~~~~~~~~~ 315 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++... .+...... +. . ...+. ...
T Consensus 146 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~ 216 (256)
T 1geg_A 146 NPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWA------EIDRQVSEAAGKPLGYGTAEFA---KRI 216 (256)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH------HHHHHHHHHHTCCTTHHHHHHH---TTC
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhh------hhhhhccccccCChHHHHHHHH---hcC
Confidence 1245689999999999999998874 899999999999886311 11000000 00 0 00000 001
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
....+.+++|+|++++.++...... ..|+++++.+|..
T Consensus 217 p~~r~~~p~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~~ 254 (256)
T 1geg_A 217 TLGRLSEPEDVAACVSYLASPDSDY----------MTGQSLLIDGGMV 254 (256)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSSSS
T ss_pred CCCCCcCHHHHHHHHHHHhCccccC----------CCCCEEEeCCCcc
Confidence 1123789999999999998755422 2348999887643
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=197.97 Aligned_cols=219 Identities=16% Similarity=0.118 Sum_probs=157.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
+|+||||||+|+||++++++|+++|++|++++|+.+. .. +.. ++.++.+|++| ++++++++..
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~-------~~-~~~---~~~~~~~D~~~-~~~~~~~~~~~~~~g 69 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE-------AA-QSL---GAVPLPTDLEK-DDPKGLVKRALEALG 69 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH-------HH-HHH---TCEEEECCTTT-SCHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH-------HH-Hhh---CcEEEecCCch-HHHHHHHHHHHHHcC
Confidence 5799999999999999999999999999999995421 11 111 38889999999 8777766543
Q ss_pred CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.... .
T Consensus 70 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~----------~ 138 (239)
T 2ekp_A 70 GLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGW-GRVLFIGSVTTFTAGG----------P 138 (239)
T ss_dssp SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCCT----------T
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECchhhccCCC----------C
Confidence 679999999975432 2344567899999999988888873 3443 4999999987764211 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..........+...+.... +. ..+..
T Consensus 139 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~--p~----------~~~~~ 206 (239)
T 2ekp_A 139 VPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARI--PM----------GRWAR 206 (239)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTC--TT----------SSCBC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcC--CC----------CCCcC
Confidence 346789999999999999998885 8999999999998874210000011122222211 11 13678
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
++|+|++++.++...... ..|+.+++.+|.
T Consensus 207 ~~dvA~~~~~l~s~~~~~----------~tG~~~~vdgG~ 236 (239)
T 2ekp_A 207 PEEIARVAAVLCGDEAEY----------LTGQAVAVDGGF 236 (239)
T ss_dssp HHHHHHHHHHHTSGGGTT----------CCSCEEEESTTT
T ss_pred HHHHHHHHHHHcCchhcC----------CCCCEEEECCCc
Confidence 999999999998654321 234889888763
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-25 Score=203.02 Aligned_cols=227 Identities=12% Similarity=0.093 Sum_probs=163.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+. ..+...+.. ...++.++.+|++|+++++++++.+
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~----~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATL----LAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHH----HHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999994321 111111111 2357889999999999999888765
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|++|||||..... .+.++++..+++|+.|+..+.+++. +.+...+||++||...+.
T Consensus 83 ~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~----------- 151 (255)
T 4g81_D 83 EGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA----------- 151 (255)
T ss_dssp TTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------
T ss_pred HCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC-----------
Confidence 689999999975432 3455677899999999888877653 222234999999976532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
.......|+.+|.+.+.+++.++.++ ||++++|.||.|..|.......-..+...+....+...
T Consensus 152 -~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R------------ 218 (255)
T 4g81_D 152 -ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQR------------ 218 (255)
T ss_dssp -BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTCS------------
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCCC------------
Confidence 11345789999999999999999884 89999999999987632100000112222333333322
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 219 ~g~pediA~~v~fL~S~~a~~----------iTG~~i~VDGG 250 (255)
T 4g81_D 219 WGRPEELIGTAIFLSSKASDY----------INGQIIYVDGG 250 (255)
T ss_dssp CBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhCC----------CcCCEEEECCC
Confidence 455799999999988655432 34589988765
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=202.33 Aligned_cols=211 Identities=14% Similarity=0.126 Sum_probs=149.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+. ......+.. ....+.++.+|++|.++++++++.+
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 77 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQAR----IEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVD 77 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999994321 111111111 1346888999999999999988765
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 78 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~IV~isS~~~~~~---------- 146 (264)
T 3tfo_A 78 TWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRS-GQIINIGSIGALSV---------- 146 (264)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTCC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-eEEEEEcCHHHccc----------
Confidence 689999999985432 2345567899999999988887764 3342 39999999776431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh-CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~-gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
......|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... .......... ......+.
T Consensus 147 --~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~----------~~~~~~~~~~-----~~~~~~~~ 209 (264)
T 3tfo_A 147 --VPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGT----------ITHEETMAAM-----DTYRAIAL 209 (264)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC--------------------------------------CC
T ss_pred --CCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCccccc----------ccchhHHHHH-----HhhhccCC
Confidence 1345789999999999999999886 8999999999998763221 0000000000 00111246
Q ss_pred eHHHHHHHHHHHHhhchh
Q 013602 322 YIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~ 339 (439)
..+|+|++++.++..+..
T Consensus 210 ~pedvA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 210 QPADIARAVRQVIEAPQS 227 (264)
T ss_dssp CHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHhcCCcc
Confidence 899999999999987764
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=196.10 Aligned_cols=229 Identities=13% Similarity=0.100 Sum_probs=164.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|+++++... ........+. .....+.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK---EEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDN 81 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCS---HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999755332 1111111111 12346888999999999988888764
Q ss_pred ---------CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCC
Q 013602 174 ---------SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 ---------~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||...... +.++++..+++|+.|+.++++++.+.- ...+||++||...+..
T Consensus 82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~------- 154 (255)
T 3icc_A 82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRIS------- 154 (255)
T ss_dssp HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSC-------
T ss_pred HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccC-------
Confidence 2799999999754322 234456789999999999999987641 1239999999776431
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
......|+.+|++.+.+++.++.++ |+++++|+||.|.++..........+........+.
T Consensus 155 -----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~----------- 218 (255)
T 3icc_A 155 -----LPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAF----------- 218 (255)
T ss_dssp -----CTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTSTT-----------
T ss_pred -----CCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhccCCc-----------
Confidence 1345789999999999999998885 899999999999887543221111122222222221
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 219 -~~~~~~~dva~~~~~l~s~~~~~----------~tG~~i~vdgG~ 253 (255)
T 3icc_A 219 -NRLGEVEDIADTAAFLASPDSRW----------VTGQLIDVSGGS 253 (255)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSST
T ss_pred -CCCCCHHHHHHHHHHHhCcccCC----------ccCCEEEecCCe
Confidence 23567999999999988755432 345899998874
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=201.38 Aligned_cols=217 Identities=13% Similarity=0.122 Sum_probs=161.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHh-CCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKR-RGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.++|+||||||+|+||++++++|++ .|++|++.+|+... ....+.++.+|++|.++++++++..
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~-------------~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 68 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF-------------SAENLKFIKADLTKQQDITNVLDIIKN 68 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC-------------CCTTEEEEECCTTCHHHHHHHHHHTTT
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc-------------ccccceEEecCcCCHHHHHHHHHHHHh
Confidence 3578999999999999999999999 78999999985431 1236789999999999999988644
Q ss_pred -CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCCC-CeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANPQ-PAIVWASSSSVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~-~~~V~~SS~~v~g~~~~~~~~e~~~~~~p 247 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+.... .+||++||...+.. ..+
T Consensus 69 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------~~~ 136 (244)
T 4e4y_A 69 VSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIA------------KPN 136 (244)
T ss_dssp CCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCC------------CTT
T ss_pred CCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccC------------CCC
Confidence 689999999985432 234556789999999999999998764311 38999999876531 134
Q ss_pred CChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHH-----------HHHHHHcCCCCceeecCCC
Q 013602 248 ASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFF-----------FTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~-----------~~~~~~~g~~~~~~~~~~~ 313 (439)
...|+.||++.+.+++.++.+ .|+++++|+||.|.++.... .... .........
T Consensus 137 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---------- 204 (244)
T 4e4y_A 137 SFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRN--LIQKYANNVGISFDEAQKQEEKEF---------- 204 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHH--HHHHHHHHHTCCHHHHHHHHHTTS----------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHH--HHHhhhhhcCCCHHHHHHHHhhcC----------
Confidence 578999999999999999986 48999999999998763210 0000 111111111
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
....+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 205 --p~~r~~~p~dvA~~v~~l~s~~~~~----------itG~~i~vdGG~ 241 (244)
T 4e4y_A 205 --PLNRIAQPQEIAELVIFLLSDKSKF----------MTGGLIPIDGGY 241 (244)
T ss_dssp --TTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred --CCCCCcCHHHHHHHHHHHhcCcccc----------ccCCeEeECCCc
Confidence 1224678999999999998765432 345899998764
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-24 Score=198.19 Aligned_cols=216 Identities=16% Similarity=0.092 Sum_probs=157.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+... .+..+.+|++|.++++++++.+
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK--------------GLFGVEVDVTDSDAVDRAFTAVEEH 78 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT--------------TSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH--------------HhcCeeccCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999654321 1224889999999999988764
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+ .++||++||...+..
T Consensus 79 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~----------- 146 (247)
T 1uzm_A 79 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVSGLWG----------- 146 (247)
T ss_dssp HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCCC--------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEECCHhhccC-----------
Confidence 679999999975432 23455678999999999999888753 34 349999999765321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... ........+... .+ ...+
T Consensus 147 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~--~p----------~~~~ 211 (247)
T 1uzm_A 147 -IGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA--LDERIQQGALQF--IP----------AKRV 211 (247)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH--SCHHHHHHHGGG--CT----------TCSC
T ss_pred -CCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhh--cCHHHHHHHHhc--CC----------CCCC
Confidence 1345789999999999999998874 8999999999998752110 000111111111 11 1237
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.+++|+|++++.++...... ..|+++++.+|..
T Consensus 212 ~~~~dvA~~~~~l~s~~~~~----------~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 212 GTPAEVAGVVSFLASEDASY----------ISGAVIPVDGGMG 244 (247)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHcCccccC----------CcCCEEEECCCcc
Confidence 89999999999998754321 2348999988754
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=200.14 Aligned_cols=204 Identities=16% Similarity=0.138 Sum_probs=151.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh----hcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL----ERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+.+|++|||||+|+||.+++++|+++|++|++++|+.+. ......+.. ....+.++.+|++|.++++++++.
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQN----LEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKD 80 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHH----HHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999994321 111111111 125789999999999999998876
Q ss_pred c-----CccEEEEcccccCcc---ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR---YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~---~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
+ ++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 81 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~-------- 151 (250)
T 3nyw_A 81 IHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKN-GYIFNVASRAAKYG-------- 151 (250)
T ss_dssp HHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECC--------------
T ss_pred HHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEEccHHhcCC--------
Confidence 5 689999999975332 2344566899999999998888873 3443 39999999665321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+ +.... ....+ .
T Consensus 152 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~----------~~~~~--~~~~~----------~ 205 (250)
T 3nyw_A 152 ----FADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD----------MAKKA--GTPFK----------D 205 (250)
T ss_dssp -----CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH----------HHHHT--TCCSC----------G
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCc----------hhhhc--CCCcc----------c
Confidence 1346799999999999999998885 899999999999765 11111 11111 1
Q ss_pred eeeeeHHHHHHHHHHHHhhchh
Q 013602 318 RDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
..+++.+|+|++++.++..+..
T Consensus 206 ~~~~~p~dva~~v~~l~s~~~~ 227 (250)
T 3nyw_A 206 EEMIQPDDLLNTIRCLLNLSEN 227 (250)
T ss_dssp GGSBCHHHHHHHHHHHHTSCTT
T ss_pred ccCCCHHHHHHHHHHHHcCCCc
Confidence 2378899999999999986654
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=198.44 Aligned_cols=218 Identities=15% Similarity=0.106 Sum_probs=158.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH-HHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM-ALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~~~~~~~~~- 173 (439)
+++|+|+||||+||||++++++|+++|++ |++++|+... ... ..........++.++.+|++|. ++++++++.+
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~-~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TAL-AELKAINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHH-HHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHH-HHHHHhCCCceEEEEEEecCCChHHHHHHHHHHH
Confidence 57899999999999999999999999997 9999995431 111 1111111134688999999998 8888888754
Q ss_pred ----CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCC------CCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP------QPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~------~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||.. ..++++..+++|+.|+.++++++.+... .++||++||...+..
T Consensus 80 ~~~g~id~lv~~Ag~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 144 (254)
T 1sby_A 80 DQLKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA----------- 144 (254)
T ss_dssp HHHSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC-----------
T ss_pred HhcCCCCEEEECCccC----CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccC-----------
Confidence 679999999974 3467889999999999999998864211 238999999877532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCC-hH--HHHHHHHHcCCCCceeecCCCCcce
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDM-AY--FFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~-~~--~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|++.+.+++.++.+ .|+++++|+||.|.++...... .. ......... .
T Consensus 145 -~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~---------------~ 208 (254)
T 1sby_A 145 -IHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLL---------------S 208 (254)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHT---------------T
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHHh---------------c
Confidence 134578999999999999999876 5899999999999986321000 00 000000110 0
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+.+++|+|++++.++.... .|++|++.+|
T Consensus 209 ~~~~~~~dvA~~i~~~~~~~~-------------~G~~~~v~gG 239 (254)
T 1sby_A 209 HPTQTSEQCGQNFVKAIEANK-------------NGAIWKLDLG 239 (254)
T ss_dssp SCCEEHHHHHHHHHHHHHHCC-------------TTCEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHcCC-------------CCCEEEEeCC
Confidence 123489999999999886321 2388999886
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-24 Score=198.34 Aligned_cols=209 Identities=13% Similarity=0.125 Sum_probs=159.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
.+|+||||||+|+||++++++|+++|++|++++|+..... -..+.+|++|.++++++++.+
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~---------------~~~~~~d~~d~~~v~~~~~~~~~~~ 85 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA---------------DHSFTIKDSGEEEIKSVIEKINSKS 85 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS---------------SEEEECSCSSHHHHHHHHHHHHTTT
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc---------------ccceEEEeCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999654321 235789999999999988776
Q ss_pred -CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~~ 246 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++..... .++||++||...+. ...
T Consensus 86 g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------~~~ 153 (251)
T 3orf_A 86 IKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN------------RTS 153 (251)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------CCT
T ss_pred CCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc------------CCC
Confidence 68999999997532 223455678999999999999999876421 13899999977652 113
Q ss_pred CCChHHHHHHHHHHHHHHHHhH-----hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 247 PASLYAATKKAGEEIAHTYNHI-----YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~-----~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++ +........ ....++
T Consensus 154 ~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~----------~~~~~~~~~------------~~~~~~ 211 (251)
T 3orf_A 154 GMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTP----------TNRKYMSDA------------NFDDWT 211 (251)
T ss_dssp TBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCH----------HHHHHCTTS------------CGGGSB
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCc----------chhhhcccc------------cccccC
Confidence 4678999999999999999888 4799999999999875 222222111 223478
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+++|+|++++.++..+... ...|+.+++..++..
T Consensus 212 ~~~dva~~i~~l~~~~~~~---------~~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 212 PLSEVAEKLFEWSTNSDSR---------PTNGSLVKFETKSKV 245 (251)
T ss_dssp CHHHHHHHHHHHHHCGGGC---------CCTTCEEEEEEETTE
T ss_pred CHHHHHHHHHHHhcCcccc---------CCcceEEEEecCCcc
Confidence 8999999999999872221 134589998876544
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=189.88 Aligned_cols=202 Identities=14% Similarity=0.149 Sum_probs=147.2
Q ss_pred CCEEEEECCCChHHHHHHHHHH-hCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 99 GISVLVTGAAGFVGTHVSAALK-RRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+|+||||||+|+||++++++|+ ++|++|++++|+.+ . ..+.. ...++.++.+|++|.+++.++++++
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~-------~-~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~-- 74 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK-------T-RIPPEIIDHERVTVIEGSFQNPGXLEQAVTNA-- 74 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH-------H-HSCHHHHTSTTEEEEECCTTCHHHHHHHHTTC--
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc-------c-cchhhccCCCceEEEECCCCCHHHHHHHHcCC--
Confidence 4679999999999999999999 89999999999321 0 11111 3468999999999999999999977
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCC-hHHHH
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPAS-LYAAT 254 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~-~Y~~s 254 (439)
|+||||||.. |+. +.++++++++.+.. +||++||.++|+..... ..+. ...... .|+.+
T Consensus 75 d~vv~~ag~~---------------n~~-~~~~~~~~~~~~~~-~iv~iSs~~~~~~~~~~-~~~~--~~~~~~~~y~~~ 134 (221)
T 3r6d_A 75 EVVFVGAMES---------------GSD-MASIVKALSRXNIR-RVIGVSMAGLSGEFPVA-LEKW--TFDNLPISYVQG 134 (221)
T ss_dssp SEEEESCCCC---------------HHH-HHHHHHHHHHTTCC-EEEEEEETTTTSCSCHH-HHHH--HHHTSCHHHHHH
T ss_pred CEEEEcCCCC---------------Chh-HHHHHHHHHhcCCC-eEEEEeeceecCCCCcc-cccc--cccccccHHHHH
Confidence 9999999852 444 89999999998854 99999999988642210 0000 001123 89999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 334 (439)
|.++|.++++ .|+++++||||.|+++..... ..... ........+++.+|+|++++.++
T Consensus 135 K~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~---------------~~~~~--~~~~~~~~~~~~~dvA~~~~~l~ 193 (221)
T 3r6d_A 135 ERQARNVLRE----SNLNYTILRLTWLYNDPEXTD---------------YELIP--EGAQFNDAQVSREAVVKAIFDIL 193 (221)
T ss_dssp HHHHHHHHHH----SCSEEEEEEECEEECCTTCCC---------------CEEEC--TTSCCCCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----CCCCEEEEechhhcCCCCCcc---------------eeecc--CCccCCCceeeHHHHHHHHHHHH
Confidence 9999998865 599999999999998732211 11110 01111224899999999999999
Q ss_pred --hhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 335 --DTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 335 --~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
..+... .++.+.+.++.
T Consensus 194 ~~~~~~~~-----------~~~~~~i~~~~ 212 (221)
T 3r6d_A 194 HAADETPF-----------HRTSIGVGEPG 212 (221)
T ss_dssp TCSCCGGG-----------TTEEEEEECTT
T ss_pred HhcChhhh-----------hcceeeecCCC
Confidence 766543 23778887643
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-23 Score=193.21 Aligned_cols=228 Identities=11% Similarity=0.015 Sum_probs=165.8
Q ss_pred cCCCCEEEEECCCC--hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHH--HhhhcCCeEEEEcccCCHHHHHHhhc
Q 013602 96 ARNGISVLVTGAAG--FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQ--ALLERSGIFIVEGDINDMALLKKLFD 171 (439)
Q Consensus 96 ~~~~~~VlItGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~v~~~~~Dl~d~~~~~~~~~ 171 (439)
.++||++|||||+| +||.++++.|+++|++|++.+|+.+. ..+... +.....++.++++|++|+++++++++
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERS----RKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGG----HHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHH
Confidence 47899999999876 99999999999999999999995432 111111 22234578999999999999988887
Q ss_pred cc-----CccEEEEcccccCccc--------cccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCC
Q 013602 172 VV-----SFTHVMHLAAQAGVRY--------AMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 172 ~~-----~~d~Vi~~Ag~~~~~~--------~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~ 237 (439)
.+ ++|++|||||...... ..+++...+++|+.++..+.+++..... ..+||++||....-
T Consensus 79 ~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~------ 152 (256)
T 4fs3_A 79 QIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF------ 152 (256)
T ss_dssp HHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS------
T ss_pred HHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc------
Confidence 65 7899999999754321 1223446788999998888888765432 23999999966421
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCC
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
.......|+.+|.+.+.+++.++.++ ||++++|.||.|..+..........+...+....+...
T Consensus 153 ------~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R------- 219 (256)
T 4fs3_A 153 ------AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLKR------- 219 (256)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSS-------
T ss_pred ------CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCCCC-------
Confidence 11345789999999999999999884 89999999999987644322223344444444444333
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 220 -----~g~peevA~~v~fL~Sd~a~~----------iTG~~i~VDGG 251 (256)
T 4fs3_A 220 -----NVDQVEVGKTAAYLLSDLSSG----------VTGENIHVDSG 251 (256)
T ss_dssp -----CCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred -----CcCHHHHHHHHHHHhCchhcC----------ccCCEEEECcC
Confidence 345799999999998655432 34588988765
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-24 Score=197.14 Aligned_cols=206 Identities=13% Similarity=0.034 Sum_probs=140.4
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
.+.+|+||||||+|+||++++++|+++| ++|++++|+.+.... ....++.++.+|++|.++++++++++
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~- 89 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK---------PYPTNSQIIMGDVLNHAALKQAMQGQ- 89 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS---------SCCTTEEEEECCTTCHHHHHHHHTTC-
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc---------cccCCcEEEEecCCCHHHHHHHhcCC-
Confidence 3567899999999999999999999999 899999995432211 12357999999999999999999987
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|+||||||... . ...+.++++++++.+.. +||++||.++|+............ ....+...
T Consensus 90 -D~vv~~a~~~~-------~-------~~~~~~~~~~~~~~~~~-~iV~iSS~~~~~~~~~~~~~~~~~---~~~~~~~~ 150 (236)
T 3qvo_A 90 -DIVYANLTGED-------L-------DIQANSVIAAMKACDVK-RLIFVLSLGIYDEVPGKFVEWNNA---VIGEPLKP 150 (236)
T ss_dssp -SEEEEECCSTT-------H-------HHHHHHHHHHHHHTTCC-EEEEECCCCC-------------------CGGGHH
T ss_pred -CEEEEcCCCCc-------h-------hHHHHHHHHHHHHcCCC-EEEEEecceecCCCCcccccchhh---cccchHHH
Confidence 99999998521 1 13467899999998854 999999999998644322211111 11222333
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 334 (439)
+.++|..++ +.|+++++||||.|+++.... ..... ........+++++|+|++++.++
T Consensus 151 ~~~~~~~l~----~~gi~~~~vrPg~i~~~~~~~----------------~~~~~--~~~~~~~~~i~~~DvA~~i~~ll 208 (236)
T 3qvo_A 151 FRRAADAIE----ASGLEYTILRPAWLTDEDIID----------------YELTS--RNEPFKGTIVSRKSVAALITDII 208 (236)
T ss_dssp HHHHHHHHH----TSCSEEEEEEECEEECCSCCC----------------CEEEC--TTSCCSCSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HCCCCEEEEeCCcccCCCCcc----------------eEEec--cCCCCCCcEECHHHHHHHHHHHH
Confidence 444444443 359999999999999874321 01110 01111235899999999999999
Q ss_pred hhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 335 DTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
..+... .+++|+++++..
T Consensus 209 ~~~~~~-----------~g~~~~i~~~~~ 226 (236)
T 3qvo_A 209 DKPEKH-----------IGENIGINQPGT 226 (236)
T ss_dssp HSTTTT-----------TTEEEEEECSSC
T ss_pred cCcccc-----------cCeeEEecCCCC
Confidence 877643 238999998653
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-23 Score=195.07 Aligned_cols=226 Identities=15% Similarity=0.101 Sum_probs=164.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+ ...... +.. ..++..+++|++|+++++++++.+
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~----~l~~~~-~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKD----VLDAAI-AEI-GGGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHH-HHH-CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHH-HHc-CCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999432 111111 111 357889999999999999988775
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~~ 246 (439)
++|++|||||..... .++++++..+++|+.|+.++.+++.+.-. ..+||++||...+. ...
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~------------~~~ 168 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST------------GTP 168 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS------------CCT
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc------------CCC
Confidence 789999999974432 34556778999999999999998864321 12899999976532 113
Q ss_pred CCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC---C--hHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 247 PASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD---M--AYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~---~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
....|+.+|.+.+.+++.++.++ ||++++|.||.|..|..... . ....+...+....+...
T Consensus 169 ~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~PlgR----------- 237 (273)
T 4fgs_A 169 AFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGR----------- 237 (273)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTSS-----------
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCCC-----------
Confidence 45789999999999999999985 79999999999987643211 0 01123333333333333
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+...+|+|.+++.++...... ..|+++.+.+|.
T Consensus 238 -~g~peeiA~~v~FLaSd~a~~----------iTG~~i~VDGG~ 270 (273)
T 4fgs_A 238 -VGRAEEVAAAALFLASDDSSF----------VTGAELFVDGGS 270 (273)
T ss_dssp -CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred -CcCHHHHHHHHHHHhCchhcC----------ccCCeEeECcCh
Confidence 355799999999998655432 345899887764
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=196.12 Aligned_cols=207 Identities=14% Similarity=0.071 Sum_probs=150.2
Q ss_pred cccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 94 VRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 94 ~~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+..+.+|+||||||+|+||++++++|+++|++|++++|+.+. ......+. .....+.++.+|++|.+++.++++.
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 99 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEK----LRAVEREIVAAGGEAESHACDLSHSDAIAAFATG 99 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHH
Confidence 344778999999999999999999999999999999994321 11111111 1235688999999999999998887
Q ss_pred c-----CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~ 238 (439)
+ ++|+||||||.... ..+.++++..+++|+.|+.++++++.. .+ .++||++||...+.
T Consensus 100 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~------- 171 (262)
T 3rkr_A 100 VLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAK-RGHIINISSLAGKN------- 171 (262)
T ss_dssp HHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CCEEEEECSSCSSC-------
T ss_pred HHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CceEEEEechhhcC-------
Confidence 5 68999999997322 123445668999999999998888643 34 34999999977642
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
...+...|+.+|++.+.+++.++.+ .|+++++|+||.|..+.... ... ..
T Consensus 172 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----------~~~------------~~ 224 (262)
T 3rkr_A 172 -----PVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVG----------LSA------------KK 224 (262)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccc----------ccc------------cc
Confidence 1235678999999999999999887 48999999999998763210 000 01
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchh
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
....++..+|+|++++.++.....
T Consensus 225 ~~~~~~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 225 SALGAIEPDDIADVVALLATQADQ 248 (262)
T ss_dssp ----CCCHHHHHHHHHHHHTCCTT
T ss_pred ccccCCCHHHHHHHHHHHhcCccc
Confidence 123467899999999999876553
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=196.07 Aligned_cols=217 Identities=14% Similarity=0.051 Sum_probs=154.6
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
...++|+||||||+|+||++++++|+++|++|++++|+. ...+.. ..+.++ +|+ .++++++++.+
T Consensus 15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~---------~~~~~~--~~~~~~-~D~--~~~~~~~~~~~~ 80 (249)
T 1o5i_A 15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE---------ELLKRS--GHRYVV-CDL--RKDLDLLFEKVK 80 (249)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHT--CSEEEE-CCT--TTCHHHHHHHSC
T ss_pred hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH---------HHHHhh--CCeEEE-eeH--HHHHHHHHHHhc
Confidence 347889999999999999999999999999999999932 111111 356777 999 44566666554
Q ss_pred CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEV----CKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~----~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||..... .+.++++..+++|+.|+.++.++ +++.+. ++||++||...+.. .
T Consensus 81 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~------------~ 147 (249)
T 1o5i_A 81 EVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGW-GRIVAITSFSVISP------------I 147 (249)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC------------C
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEcchHhcCC------------C
Confidence 679999999975432 12345568899999997666544 455553 49999999887642 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHH-HHHcCCCCceeecCCCCcceeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTR-DILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|+++.... ....... .+.... + ...+.
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~--p----------~~~~~ 213 (249)
T 1o5i_A 148 ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE--LLSEEKKKQVESQI--P----------MRRMA 213 (249)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH--HSCHHHHHHHHTTS--T----------TSSCB
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccc--cchhhHHHHHHhcC--C----------CCCCc
Confidence 34578999999999999999887 48999999999999874210 0001111 122211 1 12378
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+++|+|++++.++...... ..|++|++.+|.
T Consensus 214 ~~~dvA~~i~~l~s~~~~~----------~tG~~~~vdgG~ 244 (249)
T 1o5i_A 214 KPEEIASVVAFLCSEKASY----------LTGQTIVVDGGL 244 (249)
T ss_dssp CHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred CHHHHHHHHHHHcCccccC----------CCCCEEEECCCc
Confidence 9999999999998754422 234899998874
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-24 Score=201.12 Aligned_cols=212 Identities=17% Similarity=0.114 Sum_probs=150.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+. .....+.++.+|++|.++++++++.+
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 106 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDV----LDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVR 106 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 11111111 11233589999999999999998876
Q ss_pred ----CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHH----hcC-CCCeEEEecCCcccCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCK----NAN-PQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~-~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ ...+||++||...+.
T Consensus 107 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~-------- 178 (281)
T 4dry_A 107 AEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT-------- 178 (281)
T ss_dssp HHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC--------
T ss_pred HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC--------
Confidence 789999999975331 2345566899999999888877764 332 123999999977542
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
...+...|+.+|++.+.+++.++.+ .|+++++|+||.|..+-.. ...... ... .....
T Consensus 179 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~----------~~~~~~-~~~----~~~~~ 239 (281)
T 4dry_A 179 ----PRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTA----------RMSTGV-LQA----NGEVA 239 (281)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-----------------CEE-ECT----TSCEE
T ss_pred ----CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhh----------hhcchh-hhh----hhccc
Confidence 1245678999999999999999887 4899999999999876321 111110 000 01112
Q ss_pred eeeeeeHHHHHHHHHHHHhhchh
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
...++.++|+|++++.++..+..
T Consensus 240 ~~~~~~pedvA~~v~fL~s~~~~ 262 (281)
T 4dry_A 240 AEPTIPIEHIAEAVVYMASLPLS 262 (281)
T ss_dssp ECCCBCHHHHHHHHHHHHHSCTT
T ss_pred ccCCCCHHHHHHHHHHHhCCCcc
Confidence 23478899999999999987764
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=203.09 Aligned_cols=224 Identities=13% Similarity=0.116 Sum_probs=162.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC---eEEEEECCCCCCChhHHHHHHHhh---hcCCeEEEEcccCCHHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD---GVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
+.+|+||||||+|+||++++++|+++|+ +|++++|+.+. ......+.. ....+.++.+|++|.+++++++
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~ 106 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEK----LEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFI 106 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHH----HHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHH
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHH----HHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence 6789999999999999999999999998 99999994321 111111111 1346889999999999999999
Q ss_pred ccc-----CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCC
Q 013602 171 DVV-----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKV 236 (439)
Q Consensus 171 ~~~-----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~ 236 (439)
+.+ ++|+||||||.... ..+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 107 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~IV~isS~~~~~----- 180 (287)
T 3rku_A 107 ENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNS-GDIVNLGSIAGRD----- 180 (287)
T ss_dssp HTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTS-----
T ss_pred HHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEECChhhcC-----
Confidence 876 68999999997542 1234556789999999999999887 34443 3999999977542
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCC--CCChHHHHHHHHHcCCCCceeecC
Q 013602 237 PFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGR--PDMAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 237 ~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~--~~~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
...+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++... ..... .........
T Consensus 181 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~-~~~~~~~~~--------- 243 (287)
T 3rku_A 181 -------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNE-EQAKNVYKD--------- 243 (287)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCH-HHHHHHHTT---------
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcH-HHHHHhhcc---------
Confidence 11346789999999999999999984 899999999999876210 00000 001111111
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
..++.++|+|++++.++...... ..|+++.+.++++
T Consensus 244 ------~~p~~pedvA~~v~~l~s~~~~~----------i~g~~i~v~~g~~ 279 (287)
T 3rku_A 244 ------TTPLMADDVADLIVYATSRKQNT----------VIADTLIFPTNQA 279 (287)
T ss_dssp ------SCCEEHHHHHHHHHHHHTSCTTE----------EEEEEEEEETTEE
T ss_pred ------cCCCCHHHHHHHHHHHhCCCCCe----------EecceEEeeCCCC
Confidence 11347899999999998866532 2347888877654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=203.93 Aligned_cols=234 Identities=18% Similarity=0.115 Sum_probs=160.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh---cCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE---RSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ .......+... ..++.++.+|++|.++++++++.+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE----AGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKV 80 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHH
Confidence 56789999999999999999999999999999999321 11111111111 246889999999999999988775
Q ss_pred -----CccEEEEcccccCccccccChhHHHHHHHHHHHHH----HHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSL----LEVCKNAN--PQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~l----l~~~~~~~--~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||... .++++..+++|+.++.++ ++.+++.+ ..++||++||...+..
T Consensus 81 ~~~~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 146 (267)
T 2gdz_A 81 VDHFGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP---------- 146 (267)
T ss_dssp HHHHSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC----------
T ss_pred HHHcCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCC----------
Confidence 6799999999743 467889999999976554 44444442 1249999999877542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH--HhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 243 RTDQPASLYAATKKAGEEIAHTY--NHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~--~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|.+.+.+++.+ +.+ .|+++++|+||.|.++....... .. .. +...............
T Consensus 147 --~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~----~~-~~~~~~~~~~~~~~~~ 218 (267)
T 2gdz_A 147 --VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEK-EE----NM-GQYIEYKDHIKDMIKY 218 (267)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGC-HH----HH-GGGGGGHHHHHHHHHH
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhcccc-cc----cc-chhhhHHHHHHHHhcc
Confidence 134568999999999999875 333 48999999999998762110000 00 00 0000000000000112
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHH
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSD 368 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~e 368 (439)
..+++++|+|++++.++.... ..|++|++.+++.+++.|
T Consensus 219 ~~~~~~~dvA~~v~~l~s~~~------------~~G~~~~v~gg~~~~~~~ 257 (267)
T 2gdz_A 219 YGILDPPLIANGLITLIEDDA------------LNGAIMKITTSKGIHFQD 257 (267)
T ss_dssp HCCBCHHHHHHHHHHHHHCTT------------CSSCEEEEETTTEEEECC
T ss_pred ccCCCHHHHHHHHHHHhcCcC------------CCCcEEEecCCCcccccC
Confidence 247899999999999987543 234899999988777654
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-23 Score=192.32 Aligned_cols=207 Identities=16% Similarity=0.184 Sum_probs=147.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----C
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-----S 174 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 174 (439)
|++|||||+|+||++++++|+++|++|++++|+.+ ......+.. ..++.++.+|++|.++++++++.+ +
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 74 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQE-----RLQELKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAEWCN 74 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHH-CTTEEEEECCTTCHHHHHHHHHTSCTTTCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHh-cCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 58999999999999999999999999999999321 111111111 247899999999999999998865 6
Q ss_pred ccEEEEcccccC-c----cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 175 FTHVMHLAAQAG-V----RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 175 ~d~Vi~~Ag~~~-~----~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
+|+||||||... . ..+.++++..+++|+.|+.++++++. +.+. ++||++||...+.. .
T Consensus 75 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~------------~ 141 (248)
T 3asu_A 75 IDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNH-GHIINIGSTAGSWP------------Y 141 (248)
T ss_dssp CCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTSC------------C
T ss_pred CCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEccchhccC------------C
Confidence 899999999752 1 22344567899999999988888875 3443 49999999776431 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccC-CCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYG-PWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.| +.... . +... .......+ ....++
T Consensus 142 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~-~----~~~~--~~~~~~~~-------~~~~~~ 207 (248)
T 3asu_A 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNV-R----FKGD--DGKAEKTY-------QNTVAL 207 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC------------------------------------CCB
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhh-c----ccCc--hHHHHHHH-------hccCCC
Confidence 345789999999999999998874 89999999999994 42210 0 0000 00000000 011246
Q ss_pred eHHHHHHHHHHHHhhchh
Q 013602 322 YIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~ 339 (439)
..+|+|++++.++.....
T Consensus 208 ~p~dvA~~v~~l~s~~~~ 225 (248)
T 3asu_A 208 TPEDVSEAVWWVSTLPAH 225 (248)
T ss_dssp CHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHhcCCcc
Confidence 899999999999886543
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-24 Score=195.40 Aligned_cols=210 Identities=12% Similarity=0.130 Sum_probs=155.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
|++|+||||||+|+||++++++|+++|++|++++|+.+... ....++.+|++|.++++++++.+
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~ 67 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------------DSNILVDGNKNWTEQEQSILEQTASS 67 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------------SEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-------------cccEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999654321 13567899999999988887742
Q ss_pred ----CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+... .++||++||...+.
T Consensus 68 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 135 (236)
T 1ooe_A 68 LQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG------------ 135 (236)
T ss_dssp HTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------
T ss_pred hCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc------------
Confidence 67999999997542 223345678999999999999999876421 13999999987653
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHhC-----CcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIYG-----LSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~g-----i~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
...+...|+.+|.+.+.+++.++.+++ +++++|+||.|.++. ........ ...
T Consensus 136 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~----------~~~~~~~~------------~~~ 193 (236)
T 1ooe_A 136 PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM----------NRKWMPNA------------DHS 193 (236)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH----------HHHHSTTC------------CGG
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc----------hhhcCCCc------------ccc
Confidence 113467899999999999999988754 999999999998762 11111111 012
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.++..+|+|++++.++..+.... ..|+.+++.++.
T Consensus 194 ~~~~~~dvA~~i~~~l~s~~~~~---------~~G~~~~v~gg~ 228 (236)
T 1ooe_A 194 SWTPLSFISEHLLKWTTETSSRP---------SSGALLKITTEN 228 (236)
T ss_dssp GCBCHHHHHHHHHHHHHCGGGCC---------CTTCEEEEEEET
T ss_pred ccCCHHHHHHHHHHHHcCCCccc---------ccccEEEEecCC
Confidence 35678999999997774433221 234788887654
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=193.13 Aligned_cols=201 Identities=16% Similarity=0.144 Sum_probs=152.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhh
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-------GVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
+|+||||||+|+||++++++|+++|+ +|++++|+.+ .......+.. ...++.++.+|++|.+++++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAA----DLEKISLECRAEGALTDTITADISDMADVRRLT 77 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHH----HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHH----HHHHHHHHHHccCCeeeEEEecCCCHHHHHHHH
Confidence 57899999999999999999999999 9999999321 1111111111 1346889999999999999988
Q ss_pred ccc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCC
Q 013602 171 DVV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 171 ~~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~ 237 (439)
+.+ ++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+. ++||++||...+..
T Consensus 78 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~----- 151 (244)
T 2bd0_A 78 THIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS-GHIFFITSVAATKA----- 151 (244)
T ss_dssp HHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC-----
T ss_pred HHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CEEEEEecchhcCC-----
Confidence 753 579999999975432 23445678999999999999888743 342 49999999887642
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCC
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
..+...|+.+|.+.+.+++.++.+ .|+++++||||.|+++...... .. .
T Consensus 152 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~------------~~---------~ 203 (244)
T 2bd0_A 152 -------FRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVD------------DE---------M 203 (244)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCC------------ST---------T
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhcc------------cc---------c
Confidence 134678999999999999988876 4899999999999998543100 00 0
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchh
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
...+++++|+|++++.++..+..
T Consensus 204 --~~~~~~~~dva~~~~~l~~~~~~ 226 (244)
T 2bd0_A 204 --QALMMMPEDIAAPVVQAYLQPSR 226 (244)
T ss_dssp --GGGSBCHHHHHHHHHHHHTSCTT
T ss_pred --cccCCCHHHHHHHHHHHHhCCcc
Confidence 12578999999999999976543
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=195.89 Aligned_cols=231 Identities=12% Similarity=-0.023 Sum_probs=167.3
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+ ++||.+++++|+++|++|++++|+.......... ........++.++.+|++|.++++++++.+
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 96 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVK-ELEKTYGIKAKAYKCQVDSYESCEKLVKDVV 96 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHH-HHHHHHCCCEECCBCCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHH-HHHHhcCCceeEEecCCCCHHHHHHHHHHHH
Confidence 688999999999 9999999999999999999999865432111111 111112457899999999999999998876
Q ss_pred ----CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||...... +.++++..+++|+.|+.++++++ ++.+. ++||++||...+...
T Consensus 97 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 167 (267)
T 3gdg_A 97 ADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGT-GSLVITASMSGHIAN-------- 167 (267)
T ss_dssp HHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTSCC--------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCC-ceEEEEccccccccC--------
Confidence 7899999999754322 34556789999999999998887 44443 399999997654211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHhC--CcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIYG--LSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~g--i~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
...+...|+.+|++.+.+++.++.+++ +++++|+||.|..+-.... .......+....+ ...
T Consensus 168 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~~------------~~r 231 (267)
T 3gdg_A 168 --FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV--PKETQQLWHSMIP------------MGR 231 (267)
T ss_dssp --SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS--CHHHHHHHHTTST------------TSS
T ss_pred --CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC--CHHHHHHHHhcCC------------CCC
Confidence 112457899999999999999999864 8999999999987643211 1122222222222 123
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+.+++|+|++++.++...... ..|+++++.+|..
T Consensus 232 ~~~~~dva~~~~~l~s~~~~~----------itG~~i~vdgG~~ 265 (267)
T 3gdg_A 232 DGLAKELKGAYVYFASDASTY----------TTGADLLIDGGYT 265 (267)
T ss_dssp CEETHHHHHHHHHHHSTTCTT----------CCSCEEEESTTGG
T ss_pred CcCHHHHHhHhheeecCcccc----------ccCCEEEECCcee
Confidence 678899999999998754322 3458999987753
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=192.98 Aligned_cols=203 Identities=16% Similarity=0.128 Sum_probs=150.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
++|+||||||+|+||++++++|+++|++|++++|+.+.. .....+. .....+.++.+|++|.++++++++.+
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRL----EKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLE 76 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999943211 1111111 22457899999999999999999865
Q ss_pred ---CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNA---NPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~---~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||...... +.++++..+++|+.|+.++++++... +.. ++|++||...+.
T Consensus 77 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~ii~~sS~~~~~------------ 143 (235)
T 3l77_A 77 RFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGG-LALVTTSDVSAR------------ 143 (235)
T ss_dssp HHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEECCGGGSS------------
T ss_pred hcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cEEEEecchhcc------------
Confidence 7899999999854432 34556789999999999999887542 212 777777755432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH-hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI-YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~-~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.......|+.+|++.+.+++.+..+ .|+++++|+||.|..+..... .. ......++.
T Consensus 144 ~~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~---------------~~-------~~~~~~~~~ 201 (235)
T 3l77_A 144 LIPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSK---------------PG-------KPKEKGYLK 201 (235)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCC---------------SC-------CCGGGTCBC
T ss_pred cCCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccccccc---------------CC-------cccccCCCC
Confidence 1123568999999999999998555 389999999999987643210 00 011124688
Q ss_pred HHHHHHHHHHHHhhchh
Q 013602 323 IDDIVKGCLAALDTAEK 339 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~ 339 (439)
++|+|++++.++..+..
T Consensus 202 p~dva~~v~~l~~~~~~ 218 (235)
T 3l77_A 202 PDEIAEAVRCLLKLPKD 218 (235)
T ss_dssp HHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 99999999999987765
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=194.28 Aligned_cols=201 Identities=17% Similarity=0.134 Sum_probs=148.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
|.+|+||||||+|+||++++++|+++|++|++++|+.+ ......+.. ..++.++.+|++|.++++++++.+
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~ 74 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQ-----RLQQQELLL-GNAVIGIVADLAHHEDVDVAFAAAVEW 74 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHH-GGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH-----HHHHHHHHh-cCCceEEECCCCCHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999432 111111222 236999999999999999988865
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANP--QPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~--~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++...-. ..+||++||...+.. .
T Consensus 75 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~------------~ 142 (235)
T 3l6e_A 75 GGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVG------------K 142 (235)
T ss_dssp HCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSS------------C
T ss_pred cCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCC------------C
Confidence 689999999985432 23455678999999999888888753211 129999999665321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.....|+.||++.+.+++.++.++ |+++++|+||.|..+.... .. . . ....++.
T Consensus 143 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~------~~-----~--~----------~~~~~~~ 199 (235)
T 3l6e_A 143 ANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDN------TD-----H--V----------DPSGFMT 199 (235)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC----------------------------------CBC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhc------cC-----C--C----------CCcCCCC
Confidence 345789999999999999999875 7999999999997763220 00 0 0 0114788
Q ss_pred HHHHHHHHHHHHhhch
Q 013602 323 IDDIVKGCLAALDTAE 338 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~ 338 (439)
++|+|++++.++..+.
T Consensus 200 pedvA~~v~~l~~~~~ 215 (235)
T 3l6e_A 200 PEDAAAYMLDALEARS 215 (235)
T ss_dssp HHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999987554
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-24 Score=202.01 Aligned_cols=224 Identities=12% Similarity=0.034 Sum_probs=152.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--Ccc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--SFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d 176 (439)
+|+||||||+|+||++++++|+++|++|++++|+.+.... . +.+|++|.++++++++.+ ++|
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---------------~-~~~Dl~~~~~v~~~~~~~~~~id 64 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA---------------D-LSTAEGRKQAIADVLAKCSKGMD 64 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------C-TTSHHHHHHHHHHHHTTCTTCCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc---------------c-cccCCCCHHHHHHHHHHhCCCCC
Confidence 3689999999999999999999999999999995532110 1 678999999999999876 689
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC-----C-----
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK-----D----- 242 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~-----~----- 242 (439)
+||||||.... ...++..+++|+.|+.++++++. +.+ .++||++||...+......+..++ +
T Consensus 65 ~lv~~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (257)
T 1fjh_A 65 GLVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGH-QPAAVVISSVASAHLAFDKNPLALALEAGEEAKAR 140 (257)
T ss_dssp EEEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHH
T ss_pred EEEECCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEECChhhhccccccchhhhhhcccchhhhh
Confidence 99999997531 24578999999999999988885 333 349999999887732111110000 0
Q ss_pred ------CCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCC
Q 013602 243 ------RTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 243 ------~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
....+...|+.||++.+.+++.++.+ .|+++++|+||.|.++...... ...........-..
T Consensus 141 ~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~-------- 211 (257)
T 1fjh_A 141 AIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGL-QDPRYGESIAKFVP-------- 211 (257)
T ss_dssp HHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC----------------------CCC--------
T ss_pred hhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhc-cchhHHHHHHhccc--------
Confidence 11124578999999999999998887 4899999999999987532110 00000000100000
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
....+.+++|+|++++.++...... ..|+.|++.++..
T Consensus 212 --~~~~~~~~~dvA~~~~~l~~~~~~~----------~tG~~~~vdgG~~ 249 (257)
T 1fjh_A 212 --PMGRRAEPSEMASVIAFLMSPAASY----------VHGAQIVIDGGID 249 (257)
T ss_dssp --STTSCCCTHHHHHHHHHHTSGGGTT----------CCSCEEEESTTHH
T ss_pred --ccCCCCCHHHHHHHHHHHhCchhcC----------CcCCEEEECCCcc
Confidence 1123788999999999998765321 3348999987743
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=195.00 Aligned_cols=202 Identities=17% Similarity=0.102 Sum_probs=153.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCC---CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRG---DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
.+++|+||||||+|+||++++++|+++| ++|++++|+.+.... .... .....++.++.+|++|.++++++++.
T Consensus 18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~-~~~l---~~~~~~~~~~~~Dl~~~~~v~~~~~~ 93 (267)
T 1sny_A 18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE-LEDL---AKNHSNIHILEIDLRNFDAYDKLVAD 93 (267)
T ss_dssp --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH-HHHH---HHHCTTEEEEECCTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHH-HHHh---hccCCceEEEEecCCChHHHHHHHHH
Confidence 3678999999999999999999999999 999999997654321 1111 11235799999999999999998875
Q ss_pred c-------CccEEEEcccccC-c----cccccChhHHHHHHHHHHHHHHHHHHhc----------CC----CCeEEEecC
Q 013602 173 V-------SFTHVMHLAAQAG-V----RYAMQNPNSYVHSNIAGLVSLLEVCKNA----------NP----QPAIVWASS 226 (439)
Q Consensus 173 ~-------~~d~Vi~~Ag~~~-~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~----------~~----~~~~V~~SS 226 (439)
+ ++|+||||||... . ..+.++++..+++|+.++.++++++.+. +. .++||++||
T Consensus 94 ~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS 173 (267)
T 1sny_A 94 IEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSS 173 (267)
T ss_dssp HHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECC
T ss_pred HHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEec
Confidence 4 5799999999754 1 2234456678999999999999888543 10 249999999
Q ss_pred CcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCC
Q 013602 227 SSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRK 303 (439)
Q Consensus 227 ~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~ 303 (439)
...+.... ...+...|+.+|++.+.+++.++.+ .|+++++|+||.|..+....
T Consensus 174 ~~~~~~~~---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--------------- 229 (267)
T 1sny_A 174 ILGSIQGN---------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS--------------- 229 (267)
T ss_dssp GGGCSTTC---------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT---------------
T ss_pred ccccccCC---------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC---------------
Confidence 87754211 1124678999999999999999887 48999999999998763220
Q ss_pred CCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchh
Q 013602 304 SIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 304 ~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
. .++..+|+|+.++.++.....
T Consensus 230 ~--------------~~~~~~~~a~~~~~~~~~~~~ 251 (267)
T 1sny_A 230 S--------------APLDVPTSTGQIVQTISKLGE 251 (267)
T ss_dssp T--------------CSBCHHHHHHHHHHHHHHCCG
T ss_pred C--------------CCCCHHHHHHHHHHHHHhcCc
Confidence 0 136679999999999986543
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-23 Score=196.62 Aligned_cols=227 Identities=12% Similarity=0.021 Sum_probs=162.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEE-CCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHH--------
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLD-NFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMA-------- 164 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~-------- 164 (439)
.+.+|+||||||+|+||++++++|+++|++|++++ |+.+ .......+. ....++.++.+|++|.+
T Consensus 6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (291)
T 1e7w_A 6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAA----EANALSATLNARRPNSAITVQADLSNVATAPVSGAD 81 (291)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC---
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHH----HHHHHHHHHhhhcCCeeEEEEeecCCcccccccccc
Confidence 36789999999999999999999999999999999 8332 111111111 11347899999999999
Q ss_pred ---------HHHHhhccc-----CccEEEEcccccCcc----cc--------------ccChhHHHHHHHHHHHHHHHHH
Q 013602 165 ---------LLKKLFDVV-----SFTHVMHLAAQAGVR----YA--------------MQNPNSYVHSNIAGLVSLLEVC 212 (439)
Q Consensus 165 ---------~~~~~~~~~-----~~d~Vi~~Ag~~~~~----~~--------------~~~~~~~~~~Nv~gt~~ll~~~ 212 (439)
+++++++.+ ++|+||||||..... .+ .++++..+++|+.|+.++++++
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~ 161 (291)
T 1e7w_A 82 GSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAF 161 (291)
T ss_dssp -CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 999888765 689999999975432 12 3445678999999999998887
Q ss_pred Hh----cCC-----CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeecc
Q 013602 213 KN----ANP-----QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFT 280 (439)
Q Consensus 213 ~~----~~~-----~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~ 280 (439)
.+ .+. .++||++||...+.. ..+...|+.+|.+.+.+++.++.++ |+++++|+||.
T Consensus 162 ~~~m~~~~~~~~~~~g~Iv~isS~~~~~~------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~ 229 (291)
T 1e7w_A 162 AHRVAGTPAKHRGTNYSIINMVDAMTNQP------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL 229 (291)
T ss_dssp HHHHHTSCGGGSCSCEEEEEECCTTTTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred HHHHHhcCCCCCCCCcEEEEEechhhcCC------------CCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCC
Confidence 53 220 249999999876431 1346789999999999999998874 89999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecC
Q 013602 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN 360 (439)
Q Consensus 281 v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 360 (439)
|..+. . .. ......+....+.. . -+...+|+|.+++.++...... ..|+++++.+
T Consensus 230 v~T~~-~--~~-~~~~~~~~~~~p~~-------~----r~~~pedvA~~v~~l~s~~~~~----------itG~~i~vdG 284 (291)
T 1e7w_A 230 SVLVD-D--MP-PAVWEGHRSKVPLY-------Q----RDSSAAEVSDVVIFLCSSKAKY----------ITGTCVKVDG 284 (291)
T ss_dssp BCCGG-G--SC-HHHHHHHHTTCTTT-------T----SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEEST
T ss_pred ccCCc-c--CC-HHHHHHHHhhCCCC-------C----CCCCHHHHHHHHHHHhCCcccC----------ccCcEEEECC
Confidence 98764 2 11 22223333222211 0 2567899999999998754422 3448898887
Q ss_pred CCc
Q 013602 361 TSP 363 (439)
Q Consensus 361 ~~~ 363 (439)
|..
T Consensus 285 G~~ 287 (291)
T 1e7w_A 285 GYS 287 (291)
T ss_dssp TGG
T ss_pred Ccc
Confidence 754
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-23 Score=190.23 Aligned_cols=228 Identities=15% Similarity=0.083 Sum_probs=164.4
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.+++|++|||||+++||+++++.|+++|++|++.+|+.+.. ...........++.++.+|++|+++++++++++
T Consensus 4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~----~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~ 79 (258)
T 4gkb_A 4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDG----AFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIA 79 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCH----HHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccH----HHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999976531 111111223467899999999999998888765
Q ss_pred ---CccEEEEcccccCc---cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV---RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~---~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||+... ..+.++++..+++|+.|+..+.+++. +.+ .+||++||...+.
T Consensus 80 ~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--G~IVnisS~~~~~------------ 145 (258)
T 4gkb_A 80 TFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR--GAIVNISSKTAVT------------ 145 (258)
T ss_dssp HHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTHHHH------------
T ss_pred HhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEeehhhcc------------
Confidence 78999999997433 23345567899999999888777763 333 3999999976432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC----hHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM----AYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.......|+.+|.+.+.+++.++.++ ||++++|.||.|..|...... ........+....+..
T Consensus 146 ~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plg---------- 215 (258)
T 4gkb_A 146 GQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPLG---------- 215 (258)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTTT----------
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCCC----------
Confidence 11345789999999999999999884 899999999999877432110 0001122223332221
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+-+...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 216 -~R~g~peeiA~~v~fLaS~~a~~----------iTG~~i~VDGG~ 250 (258)
T 4gkb_A 216 -RRFTTPDEIADTAVFLLSPRASH----------TTGEWLFVDGGY 250 (258)
T ss_dssp -TSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred -CCCcCHHHHHHHHHHHhCchhcC----------ccCCeEEECCCc
Confidence 12456799999999988655432 345899987764
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=197.02 Aligned_cols=210 Identities=12% Similarity=0.090 Sum_probs=156.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChh---HHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS---LKKARQAL-LERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+..... ......+. .....+.++.+|++|.++++++++.
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 86 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK 86 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 6789999999999999999999999999999999987644321 11111111 1235789999999999999999886
Q ss_pred c-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
+ ++|+||||||..... .+.++++..+++|+.|+.++++++...- ..++||++||...+...
T Consensus 87 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------- 159 (285)
T 3sc4_A 87 TVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPK------- 159 (285)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGG-------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCC-------
Confidence 5 789999999985432 2334556789999999999999986542 13499999997653210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeecc-ccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFT-VYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~-v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
..+...|+.||++.+.+++.++.+ .|+++++|+||. +..+ +........ .+.
T Consensus 160 ----~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~----------~~~~~~~~~-~~~--------- 215 (285)
T 3sc4_A 160 ----WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATA----------AVQNLLGGD-EAM--------- 215 (285)
T ss_dssp ----GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCH----------HHHHHHTSC-CCC---------
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccH----------HHHhhcccc-ccc---------
Confidence 023578999999999999999988 489999999994 4332 222222221 111
Q ss_pred eeeeeeHHHHHHHHHHHHhhch
Q 013602 317 ARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
..+...+|+|++++.++....
T Consensus 216 -~r~~~pedvA~~~~~l~s~~~ 236 (285)
T 3sc4_A 216 -ARSRKPEVYADAAYVVLNKPS 236 (285)
T ss_dssp -TTCBCTHHHHHHHHHHHTSCT
T ss_pred -cCCCCHHHHHHHHHHHhCCcc
Confidence 125678999999999987665
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=198.95 Aligned_cols=215 Identities=15% Similarity=0.113 Sum_probs=152.1
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh---cCCeEEEEcccCCHHHHHHhhcc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE---RSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+... ......+... ...+.++.+|++|.++++++++.
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 104 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGN----IEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSA 104 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHH----HHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHH
Confidence 3678999999999999999999999999999999993321 1111111111 13578899999999999998875
Q ss_pred c-----CccEEEEcccccCccc----cccChhHHHHHHHHH----HHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAG----LVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~g----t~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~ 238 (439)
+ ++|+||||||...... ..++++..+++|+.+ +.++++.+++.+. .++||++||...+...
T Consensus 105 ~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~----- 179 (279)
T 1xg5_A 105 IRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL----- 179 (279)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC-----
T ss_pred HHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccC-----
Confidence 4 6799999999754321 234556899999999 6677777777663 2499999998875321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh-----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCC
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY-----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~-----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
+..+...|+.+|.+.+.+++.++.++ ++++++|+||.|.++.. ............ .
T Consensus 180 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~----------~~~~~~~~~~~~----~ 240 (279)
T 1xg5_A 180 -----PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFA----------FKLHDKDPEKAA----A 240 (279)
T ss_dssp -----SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHH----------HHHTTTCHHHHH----H
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhh----------hhhcccChhHHh----h
Confidence 11345789999999999999887763 79999999999987621 001111000000 0
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhch
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
......+++++|+|++++.++..+.
T Consensus 241 ~~~~~~~~~~~dvA~~i~~l~~~~~ 265 (279)
T 1xg5_A 241 TYEQMKCLKPEDVAEAVIYVLSTPA 265 (279)
T ss_dssp HHC---CBCHHHHHHHHHHHHHSCT
T ss_pred hcccccCCCHHHHHHHHHHHhcCCc
Confidence 0112247889999999999998654
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=197.43 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=164.0
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.+.+|+||||||+|+||++++++|+++|++|++++|+.+ ......+.. ...+.++.+|++|.++++++++.+
T Consensus 27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~-----~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (281)
T 3ppi_A 27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAE-----KGKALADEL-GNRAEFVSTNVTSEDSVLAAIEAANQ 100 (281)
T ss_dssp GGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHH-CTTEEEEECCTTCHHHHHHHHHHHTT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChH-----HHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999321 111111112 357999999999999999888754
Q ss_pred --CccEEEEc-ccccCcc---------ccccChhHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCCcccCC
Q 013602 174 --SFTHVMHL-AAQAGVR---------YAMQNPNSYVHSNIAGLVSLLEVCKNA---------NPQPAIVWASSSSVYGL 232 (439)
Q Consensus 174 --~~d~Vi~~-Ag~~~~~---------~~~~~~~~~~~~Nv~gt~~ll~~~~~~---------~~~~~~V~~SS~~v~g~ 232 (439)
++|+|||| ||..... ...++++..+++|+.++.++++++... +...+||++||...+..
T Consensus 101 ~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 180 (281)
T 3ppi_A 101 LGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEG 180 (281)
T ss_dssp SSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSC
T ss_pred hCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCC
Confidence 57999999 5443221 122335789999999999999887522 12239999999876531
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceee
Q 013602 233 NTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 233 ~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~ 309 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++.... ........+....+..
T Consensus 181 ------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~~--- 243 (281)
T 3ppi_A 181 ------------QIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMES--VGEEALAKFAANIPFP--- 243 (281)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--TCHHHHHHHHHTCCSS---
T ss_pred ------------CCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhc--ccHHHHHHHHhcCCCC---
Confidence 1346789999999999999998885 8999999999998752211 0112222222222211
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
..+.+++|+|++++.++.... ..|+++++.+|..++
T Consensus 244 --------~~~~~pedvA~~v~~l~s~~~------------~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 244 --------KRLGTPDEFADAAAFLLTNGY------------INGEVMRLDGAQRFT 279 (281)
T ss_dssp --------SSCBCHHHHHHHHHHHHHCSS------------CCSCEEEESTTCCCC
T ss_pred --------CCCCCHHHHHHHHHHHHcCCC------------cCCcEEEECCCcccC
Confidence 236889999999999997422 345899999886654
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=190.96 Aligned_cols=196 Identities=15% Similarity=0.076 Sum_probs=141.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
.+|+||||||+|+||++++++|+++|++|++++|+.+ ....... ...++.++.+|++|.++++++++.+
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~-----~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEK-----RLQALAA--ELEGALPLPGDVREEGDWARAVAAMEEAF 76 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHH--HSTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH-----HHHHHHH--HhhhceEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999321 1111111 1137899999999999999888764
Q ss_pred -CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||..... .+.++++..+++|+.|+.++++.+ ++.+. ++||++||...+..
T Consensus 77 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~~------------ 143 (234)
T 2ehd_A 77 GELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGG-GTIVNVGSLAGKNP------------ 143 (234)
T ss_dssp SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC-EEEEEECCTTTTSC------------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-cEEEEECCchhcCC------------
Confidence 679999999975432 233456689999999987665554 44443 49999999876531
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
..+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++.... . . . .+ .++
T Consensus 144 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----------~-~-~---~~----------~~~ 198 (234)
T 2ehd_A 144 FKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN----------T-P-G---QA----------WKL 198 (234)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC-----------------------------------------C
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc----------c-c-c---cc----------CCC
Confidence 134678999999999999998876 38999999999997653210 0 0 0 01 157
Q ss_pred eHHHHHHHHHHHHhhch
Q 013602 322 YIDDIVKGCLAALDTAE 338 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~ 338 (439)
+++|+|++++.++..+.
T Consensus 199 ~~~dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 199 KPEDVAQAVLFALEMPG 215 (234)
T ss_dssp CHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHhCCCc
Confidence 89999999999987654
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-23 Score=192.49 Aligned_cols=171 Identities=19% Similarity=0.159 Sum_probs=132.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ .......+.. ...++.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE----ALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVR 80 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999432 1111111111 1246889999999999999888765
Q ss_pred ---CccEEEEccccc-Cc----cccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQA-GV----RYAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~-~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.. .. ..+.++++..+++|+.|+.++++++.+ .+ .++||++||...+..
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~--------- 150 (262)
T 1zem_A 81 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTASMAGVKG--------- 150 (262)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHSC---------
T ss_pred HhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhccC---------
Confidence 689999999975 22 123445678999999999998888754 33 239999999765431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGP 284 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~ 284 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+
T Consensus 151 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (262)
T 1zem_A 151 ---PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 193 (262)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcc
Confidence 1235689999999999999998774 899999999998765
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-23 Score=194.32 Aligned_cols=228 Identities=15% Similarity=0.144 Sum_probs=160.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+ ... .........+.++.+|++|.++++++++.+
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~-----~~~-~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAE-----RLR-ELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAA 76 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH-----HHH-HHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHH-----HHH-HHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999321 111 111112357899999999999999988766
Q ss_pred --CccEEEEcccccCcccc---------ccChhHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRYA---------MQNPNSYVHSNIAGLVSLLEVCKNAN--PQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~~---------~~~~~~~~~~Nv~gt~~ll~~~~~~~--~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||+...... .++++..+++|+.|+.++++++.... ...+||++||...+.
T Consensus 77 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 147 (281)
T 3zv4_A 77 FGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY--------- 147 (281)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS---------
T ss_pred cCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc---------
Confidence 78999999997532111 12356789999999999888874321 013999999976542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCCh------HH--HHHHHHHcCCCCceeec
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDMA------YF--FFTRDILNRKSIPIFES 310 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~~------~~--~~~~~~~~g~~~~~~~~ 310 (439)
...+...|+.||.+.+.+++.++.++ ++++++|+||.|..+-...... .. .+...+....+.
T Consensus 148 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----- 219 (281)
T 3zv4_A 148 ---PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPI----- 219 (281)
T ss_dssp ---SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCTT-----
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCCC-----
Confidence 11345689999999999999999886 3999999999998874321100 00 011112222221
Q ss_pred CCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 311 PDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 311 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
..+...+|+|.+++.++..+... ...|+++++.+|..
T Consensus 220 -------~r~~~pedvA~~v~fL~s~~~~~---------~itG~~i~vdGG~~ 256 (281)
T 3zv4_A 220 -------GRMPALEEYTGAYVFFATRGDSL---------PATGALLNYDGGMG 256 (281)
T ss_dssp -------SSCCCGGGGSHHHHHHHSTTTST---------TCSSCEEEESSSGG
T ss_pred -------CCCCCHHHHHHHHHHhhcccccc---------cccCcEEEECCCCc
Confidence 23567899999999998733321 13458999988753
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=192.94 Aligned_cols=209 Identities=13% Similarity=0.084 Sum_probs=156.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
.++|+||||||+|+||++++++|+++|++|++++|+.+... ....++.+|++|.++++++++.+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~v~~~~~~~~~~ 71 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------------SASVIVKMTDSFTEQADQVTAEVGKL 71 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------------SEEEECCCCSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-------------CCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999654321 13577899999999998888752
Q ss_pred ----CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||.... ..+.++++..+++|+.++.++++++.+... .++||++||...+..
T Consensus 72 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 140 (241)
T 1dhr_A 72 LGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDG----------- 140 (241)
T ss_dssp HTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC-----------
T ss_pred hCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccC-----------
Confidence 68999999997542 123345568899999999999999876421 139999999876531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh-----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY-----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~-----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+ +........ ...
T Consensus 141 -~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~----------~~~~~~~~~------------~~~ 197 (241)
T 1dhr_A 141 -TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP----------MNRKSMPEA------------DFS 197 (241)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH----------HHHHHSTTS------------CGG
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCc----------cccccCcch------------hhc
Confidence 1345789999999999999998764 599999999998765 111111111 112
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.++..+|+|++++.++...... ..|+.+.+.++.
T Consensus 198 ~~~~~~~vA~~v~~l~~~~~~~----------~~G~~~~v~g~~ 231 (241)
T 1dhr_A 198 SWTPLEFLVETFHDWITGNKRP----------NSGSLIQVVTTD 231 (241)
T ss_dssp GSEEHHHHHHHHHHHHTTTTCC----------CTTCEEEEEEET
T ss_pred cCCCHHHHHHHHHHHhcCCCcC----------ccceEEEEeCCC
Confidence 3577899999999998654321 234788886643
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=197.51 Aligned_cols=203 Identities=14% Similarity=0.029 Sum_probs=152.4
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
..+.+|+||||||+|+||++++++|+++|++|++++|+.+ .......+.. ...++.++.+|++|.++++++++.+
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 102 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH----GLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKV 102 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHH----HHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHH
Confidence 3477899999999999999999999999999999999432 1111111111 1347899999999999999988754
Q ss_pred -----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ .++||++||...+..
T Consensus 103 ~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~-------- 173 (272)
T 1yb1_A 103 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGHVS-------- 173 (272)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-CCC--------
T ss_pred HHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEechhhcCC--------
Confidence 679999999975432 2234556899999999888777764 344 349999999876531
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh------CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCC
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY------GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~------gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
..+...|+.+|++.+.+++.++.++ |+++++|+||.|.++.... ..
T Consensus 174 ----~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~---------------~~--------- 225 (272)
T 1yb1_A 174 ----VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN---------------PS--------- 225 (272)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC---------------TH---------
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc---------------cc---------
Confidence 1235689999999999999998875 7999999999998874221 00
Q ss_pred cceeeeeeHHHHHHHHHHHHhhch
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
.....+++++|+|++++.++....
T Consensus 226 ~~~~~~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 226 TSLGPTLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHTTC
T ss_pred ccccCCCCHHHHHHHHHHHHHcCC
Confidence 011246889999999999998655
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-23 Score=192.96 Aligned_cols=211 Identities=15% Similarity=0.141 Sum_probs=147.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+. |+||||||+|+||++++++|+++|++|++++|+.+ .......+.....++.++.+|++|.++++++++.+
T Consensus 20 ~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 94 (272)
T 2nwq_A 20 MS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREE----RLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEE 94 (272)
T ss_dssp -C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGG
T ss_pred cC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 55 89999999999999999999999999999999321 11111111111147899999999999999999876
Q ss_pred --CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHH----hcCCCC-eEEEecCCcccCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQP-AIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~-~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++. +.+ .+ +||++||...+..
T Consensus 95 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~~IV~isS~~~~~~--------- 164 (272)
T 2nwq_A 95 FATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHG-AGASIVNLGSVAGKWP--------- 164 (272)
T ss_dssp GSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-TTCEEEEECCGGGTSC---------
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEeCCchhccC---------
Confidence 68999999997532 12344567899999999877776663 444 34 9999999776421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... +... .......+ ...
T Consensus 165 ---~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-----~~~~--~~~~~~~~-------~~~ 227 (272)
T 2nwq_A 165 ---YPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVR-----FGGD--QARYDKTY-------AGA 227 (272)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC----------------------------------CC
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcc-----cccc--hHHHHHhh-------ccC
Confidence 1345789999999999999998874 89999999999988742200 0000 00000001 001
Q ss_pred eeeeHHHHHHHHHHHHhhchh
Q 013602 319 DFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~ 339 (439)
.++..+|+|++++.++.....
T Consensus 228 ~~~~pedvA~~v~~l~s~~~~ 248 (272)
T 2nwq_A 228 HPIQPEDIAETIFWIMNQPAH 248 (272)
T ss_dssp CCBCHHHHHHHHHHHHTSCTT
T ss_pred CCCCHHHHHHHHHHHhCCCcc
Confidence 247899999999999876543
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-23 Score=188.79 Aligned_cols=201 Identities=13% Similarity=0.100 Sum_probs=146.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--Ccc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--SFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d 176 (439)
+|+||||||+|+||++++++|+++|++|++++|+.+ ......+.. ...+.++.+|++|.++++++++.+ .+|
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~d 74 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSES-----KLSTVTNCL-SNNVGYRARDLASHQEVEQLFEQLDSIPS 74 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHH-----HHHHHHHTC-SSCCCEEECCTTCHHHHHHHHHSCSSCCS
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHH-hhccCeEeecCCCHHHHHHHHHHHhhcCC
Confidence 468999999999999999999999999999999321 111111111 357889999999999999999886 369
Q ss_pred EEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecCCcccCCCCCCCCCCCCCCCCCCCh
Q 013602 177 HVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANP--QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 250 (439)
Q Consensus 177 ~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~--~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~ 250 (439)
+||||||..... .+.++++..+++|+.|+.++++++.+... ..+||++||...+.. ..+...
T Consensus 75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~------------~~~~~~ 142 (230)
T 3guy_A 75 TVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQP------------KAQEST 142 (230)
T ss_dssp EEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSC------------CTTCHH
T ss_pred EEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCC------------CCCCch
Confidence 999999975432 23345568999999999999998764321 129999999776531 235678
Q ss_pred HHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHH
Q 013602 251 YAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327 (439)
Q Consensus 251 Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva 327 (439)
|+.+|++.+.+++.++.++ |+++++|+||.|..+.... . +.. .....+.+++|+|
T Consensus 143 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----------~--~~~----------~~~~~~~~~~dvA 200 (230)
T 3guy_A 143 YCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWET----------S--GKS----------LDTSSFMSAEDAA 200 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC--------------------------------------CCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHh----------c--CCC----------CCcccCCCHHHHH
Confidence 9999999999999999985 8999999999998763210 0 000 1123578899999
Q ss_pred HHHHHHHhhchh
Q 013602 328 KGCLAALDTAEK 339 (439)
Q Consensus 328 ~a~~~~l~~~~~ 339 (439)
++++.++..+..
T Consensus 201 ~~i~~l~~~~~~ 212 (230)
T 3guy_A 201 LMIHGALANIGN 212 (230)
T ss_dssp HHHHHHCCEETT
T ss_pred HHHHHHHhCcCC
Confidence 999999876553
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=190.79 Aligned_cols=211 Identities=16% Similarity=0.120 Sum_probs=152.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+|++|||||+|+||++++++|+++|++|++++|+.+ .......+.. ...++.++.+|++|.++++++++.+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 80 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVE----KLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVE 80 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999432 1111111111 1346889999999999999888754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+ ++||++||...+..
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~---------- 148 (247)
T 2jah_A 81 ALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSSIAGRVN---------- 148 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTCC----------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEccHHhcCC----------
Confidence 679999999975332 23345567899999999998888743 34 49999999776431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++....... ... .......+ . ...
T Consensus 149 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~-~~~~~~~~-~----------~~~ 213 (247)
T 2jah_A 149 --VRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITH-TAT-KEMYEQRI-S----------QIR 213 (247)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCC-HHH-HHHHHHHT-T----------TSC
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccc-hhh-HHHHHhcc-c----------ccC
Confidence 1345789999999999999998874 8999999999998874221100 011 11111000 0 001
Q ss_pred eeeHHHHHHHHHHHHhhch
Q 013602 320 FTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~ 338 (439)
++..+|+|++++.++....
T Consensus 214 ~~~pedvA~~v~~l~s~~~ 232 (247)
T 2jah_A 214 KLQAQDIAEAVRYAVTAPH 232 (247)
T ss_dssp CBCHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHhCCCc
Confidence 5789999999999987654
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=198.42 Aligned_cols=209 Identities=11% Similarity=0.066 Sum_probs=154.7
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChh---HHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS---LKKARQAL-LERSGIFIVEGDINDMALLKKLFD 171 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~ 171 (439)
.+++|+||||||+|+||.+++++|+++|++|++++|+.+..... ......+. .....+.++.+|++|.++++++++
T Consensus 42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 121 (346)
T 3kvo_A 42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVE 121 (346)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 36789999999999999999999999999999999987654321 11111111 123468899999999999999988
Q ss_pred cc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCC
Q 013602 172 VV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 172 ~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~ 238 (439)
.+ ++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ ..+||++||...+...
T Consensus 122 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS~~~~~~~----- 195 (346)
T 3kvo_A 122 KAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSK-VAHILNISPPLNLNPV----- 195 (346)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCS-SCEEEEECCCCCCCGG-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHcCCC-----
Confidence 65 789999999975432 2234556889999999999999884 333 2499999997754311
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
...+...|+.+|++.+.+++.++.++ |+++++|+||.+... .+...+ .+. .+
T Consensus 196 -----~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T---------~~~~~~-~~~-~~---------- 249 (346)
T 3kvo_A 196 -----WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT---------AAMDML-GGP-GI---------- 249 (346)
T ss_dssp -----GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC---------HHHHHH-CC---C----------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc---------HHHHhh-ccc-cc----------
Confidence 01346789999999999999999885 799999999963332 122211 111 11
Q ss_pred eeeeeeHHHHHHHHHHHHhh
Q 013602 317 ARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~ 336 (439)
...+..++|+|++++.++..
T Consensus 250 ~~r~~~pedvA~~v~~L~s~ 269 (346)
T 3kvo_A 250 ESQCRKVDIIADAAYSIFQK 269 (346)
T ss_dssp GGGCBCTHHHHHHHHHHHTS
T ss_pred cccCCCHHHHHHHHHHHHhc
Confidence 12356789999999999987
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=188.71 Aligned_cols=204 Identities=17% Similarity=0.155 Sum_probs=150.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHH--hhhcCCeEEEEccc--CCHHHHHHhhc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQA--LLERSGIFIVEGDI--NDMALLKKLFD 171 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl--~d~~~~~~~~~ 171 (439)
.+++|+||||||+|+||++++++|+++|++|++++|+.+. ......+ ......+.++.+|+ +|.++++++++
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~ 86 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEAS----LAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAA 86 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHH----HHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHH
Confidence 3688999999999999999999999999999999994321 1111111 11224677777777 99999998887
Q ss_pred cc-----CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCC
Q 013602 172 VV-----SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 172 ~~-----~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~ 237 (439)
.+ ++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ .++||++||...+.
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~------ 159 (247)
T 3i1j_A 87 RVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSE-DASIAFTSSSVGRK------ 159 (247)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SEEEEEECCGGGTS------
T ss_pred HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCeEEEEcchhhcC------
Confidence 65 789999999975321 2345567899999999999999884 333 34999999976542
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCC
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHIY----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
...+...|+.+|++.+.+++.++.++ |+++++|+||.|..+ +........
T Consensus 160 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~----------~~~~~~~~~---------- 213 (247)
T 3i1j_A 160 ------GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTG----------MRAQAYPDE---------- 213 (247)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSH----------HHHHHSTTS----------
T ss_pred ------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCc----------cchhccccc----------
Confidence 11346789999999999999998874 689999999998764 112111111
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhch
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
....+...+|+|.+++.++....
T Consensus 214 --~~~~~~~p~dva~~~~~l~s~~~ 236 (247)
T 3i1j_A 214 --NPLNNPAPEDIMPVYLYLMGPDS 236 (247)
T ss_dssp --CGGGSCCGGGGTHHHHHHHSGGG
T ss_pred --CccCCCCHHHHHHHHHHHhCchh
Confidence 11235678999999999987554
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=189.22 Aligned_cols=220 Identities=12% Similarity=0.023 Sum_probs=158.0
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.++||++|||||+++||+++++.|+++|++|++.+|+... ......++++|++|.++++++++.+
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~-------------~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE-------------GLPEELFVEADLTTKEGCAIVAEATRQ 74 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT-------------TSCTTTEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh-------------CCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999995431 1123457899999999998888764
Q ss_pred ---CccEEEEcccccCc------cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|++|||||.... ..+.++++..+++|+.|+.++.+++ ++.+. .+||++||...+-.
T Consensus 75 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~Iv~isS~~~~~~-------- 145 (261)
T 4h15_A 75 RLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGS-GVVVHVTSIQRVLP-------- 145 (261)
T ss_dssp HTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC--------
T ss_pred HcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCC-ceEEEEEehhhccC--------
Confidence 68999999996432 2234566789999999987777765 34443 39999999764311
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC-----------C-ChHHHHHHHHHcCCCC
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP-----------D-MAYFFFTRDILNRKSI 305 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~-----------~-~~~~~~~~~~~~g~~~ 305 (439)
.......|+.||.+.+.+++.++.++ ||++++|.||.|..|.... + .....+........+.
T Consensus 146 ---~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 222 (261)
T 4h15_A 146 ---LPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIPL 222 (261)
T ss_dssp ---CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCTT
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCCC
Confidence 10234679999999999999999984 8999999999997652110 0 0001111222222222
Q ss_pred ceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 306 PIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 306 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.. +...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 223 gR------------~g~peevA~~v~fLaS~~a~~----------itG~~i~VDGG~ 257 (261)
T 4h15_A 223 GR------------PAKPEEVANLIAFLASDRAAS----------ITGAEYTIDGGT 257 (261)
T ss_dssp SS------------CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred CC------------CcCHHHHHHHHHHHhCchhcC----------ccCcEEEECCcC
Confidence 22 566899999999988654432 345899987764
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-23 Score=195.65 Aligned_cols=208 Identities=16% Similarity=0.038 Sum_probs=153.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHh-CCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKR-RGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+||||||+||||++++++|++ +|++|++++|+.+. ......+.. ...++.++.+|++|.++++++++.+
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR----GQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLR 77 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH----HHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHH----HHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999 99999999994321 111111111 1246899999999999999998855
Q ss_pred ----CccEEEEcccccCcccc----ccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCC-CC---------
Q 013602 174 ----SFTHVMHLAAQAGVRYA----MQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGL-NT--------- 234 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~-~~--------- 234 (439)
++|+||||||....... .++++..+++|+.|+.++++++.+... .++||++||...+.. ..
T Consensus 78 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~ 157 (276)
T 1wma_A 78 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKF 157 (276)
T ss_dssp HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHH
T ss_pred HhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhc
Confidence 67999999997543221 244568899999999999999986531 139999999766521 00
Q ss_pred -CCCCCCCC------------------CCCCCCChHHHHHHHHHHHHHHHHhH-------hCCcEEEEeeccccCCCCCC
Q 013602 235 -KVPFSEKD------------------RTDQPASLYAATKKAGEEIAHTYNHI-------YGLSLTGLRFFTVYGPWGRP 288 (439)
Q Consensus 235 -~~~~~e~~------------------~~~~p~~~Y~~sK~a~E~~~~~~~~~-------~gi~~~ilrpg~v~G~~~~~ 288 (439)
..++.|++ ....|...|+.+|++.|.+++.++++ .|+++++|+||.|.++....
T Consensus 158 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~ 237 (276)
T 1wma_A 158 RSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP 237 (276)
T ss_dssp HCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT
T ss_pred cccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc
Confidence 00111111 01124589999999999999998877 38999999999998764321
Q ss_pred CChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 289 DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
..+.+++|+|.+++.++..+
T Consensus 238 -----------------------------~~~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 238 -----------------------------KATKSPEEGAETPVYLALLP 257 (276)
T ss_dssp -----------------------------TCSBCHHHHTHHHHHHHSCC
T ss_pred -----------------------------cccCChhHhhhhHhhhhcCc
Confidence 02578999999999998755
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=191.85 Aligned_cols=227 Identities=12% Similarity=0.026 Sum_probs=159.2
Q ss_pred CCCCEEEEECC--CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGA--AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|+|||||| +|+||++++++|+++|++|++++|+.+ .......+.. ..++.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL----RLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVT 79 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCH----HHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChH----HHHHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHH
Confidence 67899999999 999999999999999999999999432 1001111111 246889999999999999988854
Q ss_pred -------CccEEEEcccccCc---------cccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCC
Q 013602 174 -------SFTHVMHLAAQAGV---------RYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKV 236 (439)
Q Consensus 174 -------~~d~Vi~~Ag~~~~---------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~ 236 (439)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+.-. .++||++||...++
T Consensus 80 ~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~----- 154 (269)
T 2h7i_A 80 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA----- 154 (269)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC-----
T ss_pred HHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc-----
Confidence 67999999997541 123344567899999999999999975421 13999999976532
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCC------CCChH----HHHHHHHHcCC
Q 013602 237 PFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGR------PDMAY----FFFTRDILNRK 303 (439)
Q Consensus 237 ~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~------~~~~~----~~~~~~~~~g~ 303 (439)
......|+.+|.+.+.+++.++.++ |+++++|+||.|..+... ..... ..+...+....
T Consensus 155 --------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
T 2h7i_A 155 --------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRA 226 (269)
T ss_dssp --------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHC
T ss_pred --------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhccC
Confidence 1345789999999999999998885 899999999999765210 00000 00011111111
Q ss_pred CCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 304 SIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 304 ~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+.. +.+...+|+|.+++.++...... ..|+++.+.+|.
T Consensus 227 p~~-----------rr~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 264 (269)
T 2h7i_A 227 PIG-----------WNMKDATPVAKTVCALLSDWLPA----------TTGDIIYADGGA 264 (269)
T ss_dssp TTC-----------CCTTCCHHHHHHHHHHHSSSCTT----------CCSEEEEESTTG
T ss_pred Ccc-----------cCCCCHHHHHHHHHHHhCchhcc----------CcceEEEecCCe
Confidence 111 02456799999999998654321 345889887764
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-22 Score=189.05 Aligned_cols=208 Identities=14% Similarity=0.104 Sum_probs=152.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChh---HHHHHHH-hhhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS---LKKARQA-LLERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+++|+||||||+|+||++++++|+++|++|++++|+.+..... ....... .....++.++.+|++|.++++++++.
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 83 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA 83 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 6789999999999999999999999999999999987643221 1211111 11245788999999999999998886
Q ss_pred c-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
+ ++|+||||||..... .+.++++..+++|+.|+.++++++.. .+ .++||++||...+...
T Consensus 84 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~------ 156 (274)
T 3e03_A 84 TVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAP-NPHILTLAPPPSLNPA------ 156 (274)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSS-SCEEEECCCCCCCCHH------
T ss_pred HHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcC-CceEEEECChHhcCCC------
Confidence 5 689999999975432 23345568899999999999888753 33 3499999997754210
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeecc-ccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFT-VYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~-v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
...+...|+.||++.+.+++.++.++ |+++++|+||. +-.+.. ....+..
T Consensus 157 ----~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~-----------~~~~~~~----------- 210 (274)
T 3e03_A 157 ----WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAI-----------NMLPGVD----------- 210 (274)
T ss_dssp ----HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC------------------CCC-----------
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchh-----------hhccccc-----------
Confidence 01235679999999999999999885 89999999995 443311 0111111
Q ss_pred ceeeeeeHHHHHHHHHHHHhhch
Q 013602 316 VARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
...+...+|+|++++.++....
T Consensus 211 -~~~~~~pedvA~~v~~l~s~~~ 232 (274)
T 3e03_A 211 -AAACRRPEIMADAAHAVLTREA 232 (274)
T ss_dssp -GGGSBCTHHHHHHHHHHHTSCC
T ss_pred -ccccCCHHHHHHHHHHHhCccc
Confidence 1125678999999999987654
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=188.31 Aligned_cols=202 Identities=19% Similarity=0.196 Sum_probs=131.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHH---Hhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLK---KLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~---~~~~~~ 173 (439)
+.+|+||||||+||||++++++|++ |++|++++|+.+ .. .......++.++.+|++|.++.+ +.++..
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~-------~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPE-------HL-AALAEIEGVEPIESDIVKEVLEEGGVDKLKNL 73 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHH-------HH-HHHHTSTTEEEEECCHHHHHHTSSSCGGGTTC
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHH-------HH-HHHHhhcCCcceecccchHHHHHHHHHHHHhc
Confidence 5689999999999999999999987 999999998321 11 11112457899999999886622 222332
Q ss_pred -CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||...... +.++++..+++|+.|+.++++++. +.+ .+||++||...+..
T Consensus 74 ~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~------------ 139 (245)
T 3e9n_A 74 DHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGAGNGP------------ 139 (245)
T ss_dssp SCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC-------------------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCcccccC------------
Confidence 6899999999854322 334566889999999887777763 334 39999999876542
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
..+...|+.+|++.+.+++.++.+ .|+++++|+||.|.++.... +.. ... .......++
T Consensus 140 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~------~~~----~~~--------~~~~~~~~~ 201 (245)
T 3e9n_A 140 HPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQG------LMD----SQG--------TNFRPEIYI 201 (245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------CCGGGS
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhh------hhh----hhh--------cccccccCC
Confidence 134678999999999999999887 48999999999998874321 100 000 001123478
Q ss_pred eHHHHHHHHHHHHhhchh
Q 013602 322 YIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~ 339 (439)
+++|+|++++.+++.+..
T Consensus 202 ~p~dvA~~i~~l~~~~~~ 219 (245)
T 3e9n_A 202 EPKEIANAIRFVIDAGET 219 (245)
T ss_dssp CHHHHHHHHHHHHTSCTT
T ss_pred CHHHHHHHHHHHHcCCCc
Confidence 899999999999987653
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=192.66 Aligned_cols=203 Identities=15% Similarity=0.132 Sum_probs=149.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+.+|+||||||+|+||++++++|+++|++|++++|+.+. ......+. .....+.++.+|++|.++++++++.+
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 101 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKET----LQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG 101 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999999999999999994321 11111111 11236889999999999999888754
Q ss_pred ----CccEEEEc-ccccCccc---cccChhHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHL-AAQAGVRY---AMQNPNSYVHSNIAGLVSLLEVCKNA---NPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ----~~d~Vi~~-Ag~~~~~~---~~~~~~~~~~~Nv~gt~~ll~~~~~~---~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+|||| ||...... +.++.+..+++|+.|+.++++++... + .++||++||...+..
T Consensus 102 ~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~---------- 170 (286)
T 1xu9_A 102 KLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-NGSIVVVSSLAGKVA---------- 170 (286)
T ss_dssp HHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEGGGTSC----------
T ss_pred HHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC-CCEEEEECCcccccC----------
Confidence 67999999 56543221 23345678999999999988887432 2 239999999776431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh-----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY-----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~-----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|++.+.+++.++.++ ++++++++||.|.++. ......+ ...
T Consensus 171 --~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~----------~~~~~~~------------~~~ 226 (286)
T 1xu9_A 171 --YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET----------AMKAVSG------------IVH 226 (286)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH----------HHHHSCG------------GGG
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh----------HHHhccc------------ccc
Confidence 1346789999999999999988775 8999999999997651 1111111 111
Q ss_pred eeeeeHHHHHHHHHHHHhhch
Q 013602 318 RDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~ 338 (439)
..+++++|+|++++.+++...
T Consensus 227 ~~~~~~~~vA~~i~~~~~~~~ 247 (286)
T 1xu9_A 227 MQAAPKEECALEIIKGGALRQ 247 (286)
T ss_dssp GGCBCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhcCC
Confidence 246889999999999987644
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=188.71 Aligned_cols=214 Identities=15% Similarity=0.128 Sum_probs=150.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHh---CCCeEEEEECCCCCCChhHHHHHHHhhh---cCCeEEEEcccCCHHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKR---RGDGVLGLDNFNDYYDPSLKKARQALLE---RSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
+++|++|||||+|+||++++++|++ +|++|++++|+.+. ......+... ...+.++.+|++|.+++++++
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 79 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESM----LRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLL 79 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHH----HHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHH----HHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHH
Confidence 5789999999999999999999999 89999999994321 1111111111 346889999999999998888
Q ss_pred ccc-------Ccc--EEEEcccccCc--c-----ccccChhHHHHHHHHHHHHHHHHHHhcCC-----CCeEEEecCCcc
Q 013602 171 DVV-------SFT--HVMHLAAQAGV--R-----YAMQNPNSYVHSNIAGLVSLLEVCKNANP-----QPAIVWASSSSV 229 (439)
Q Consensus 171 ~~~-------~~d--~Vi~~Ag~~~~--~-----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-----~~~~V~~SS~~v 229 (439)
+.+ ++| +||||||.... . .+.++++..+++|+.|+.++++++..... .++||++||...
T Consensus 80 ~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~ 159 (259)
T 1oaa_A 80 SAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCA 159 (259)
T ss_dssp HHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGG
T ss_pred HHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchh
Confidence 654 458 99999997532 1 23345678999999999999999865421 238999999876
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh-CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCC-Cce
Q 013602 230 YGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKS-IPI 307 (439)
Q Consensus 230 ~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~-gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~-~~~ 307 (439)
+.. ..+...|+.+|.+.+.+++.++.++ ++++++|+||.|..+.. ..+... ..... ...
T Consensus 160 ~~~------------~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~------~~~~~~-~~~~~~~~~ 220 (259)
T 1oaa_A 160 LQP------------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQ------QLARET-SKDPELRSK 220 (259)
T ss_dssp TSC------------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHH------HHHHHH-CSCHHHHHH
T ss_pred cCC------------CCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchH------HHHhhc-cCChhHHHH
Confidence 531 1346789999999999999999986 59999999999865411 011000 00000 000
Q ss_pred eecCCCCcceeeeeeHHHHHHHHHHHHhh
Q 013602 308 FESPDHGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 308 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
+. .......+..++|+|++++.++..
T Consensus 221 ~~---~~~p~~~~~~p~dvA~~v~~l~~~ 246 (259)
T 1oaa_A 221 LQ---KLKSDGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp HH---HHHHTTCSBCHHHHHHHHHHHHHH
T ss_pred HH---HhhhcCCcCCHHHHHHHHHHHHhh
Confidence 00 000012367899999999999874
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=187.11 Aligned_cols=220 Identities=11% Similarity=0.047 Sum_probs=148.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
+|+||||||+|+||++++++|+++|++|++++|+.+..+. ..........+.++ |..+ ++++++.+
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~----~~~l~~~~~~~~~~--d~~~---v~~~~~~~~~~~g 71 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDE----LEAFAETYPQLKPM--SEQE---PAELIEAVTSAYG 71 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHH----HHHHHHHCTTSEEC--CCCS---HHHHHHHHHHHHS
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHHHhcCCcEEEE--CHHH---HHHHHHHHHHHhC
Confidence 3689999999999999999999999999999995532111 11100112234433 4444 44444322
Q ss_pred CccEEEEccccc-Ccc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQA-GVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 ~~d~Vi~~Ag~~-~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||.. ... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 72 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~------------ 138 (254)
T 1zmt_A 72 QVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKS-GHIIFITSATPFGP------------ 138 (254)
T ss_dssp CCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCSTTTSC------------
T ss_pred CCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECCcccccC------------
Confidence 679999999975 221 2334567899999999999888874 3442 49999999776431
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHH------HHHHHHHcCCCCceeecCCCCc
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYF------FFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|+||......... .....+.... +
T Consensus 139 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~--p--------- 207 (254)
T 1zmt_A 139 WKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVT--A--------- 207 (254)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHS--S---------
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccC--C---------
Confidence 1345789999999999999998875 899999999999887643211111 0111111111 1
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
...+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 208 -~~~~~~p~dvA~~v~~l~s~~~~~----------~tG~~~~vdgG~ 243 (254)
T 1zmt_A 208 -LQRLGTQKELGELVAFLASGSCDY----------LTGQVFWLAGGF 243 (254)
T ss_dssp -SSSCBCHHHHHHHHHHHHTTSCGG----------GTTCEEEESTTC
T ss_pred -CCCCcCHHHHHHHHHHHhCcccCC----------ccCCEEEECCCc
Confidence 112678999999999998754422 234899988764
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=188.48 Aligned_cols=208 Identities=16% Similarity=0.087 Sum_probs=147.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCH-HHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDM-ALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~-~~~~~~~~~~ 173 (439)
..+|+||||||+||||.+++++|+++|++|++++|+.... .....+.. ...++.++.+|++|. ++++++++.+
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~ 85 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKG----HEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFI 85 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHH
Confidence 5789999999999999999999999999999999943211 11111111 224789999999998 8888887754
Q ss_pred -----CccEEEEcccccCcc----------------------------------ccccChhHHHHHHHHHHHHHHHHHHh
Q 013602 174 -----SFTHVMHLAAQAGVR----------------------------------YAMQNPNSYVHSNIAGLVSLLEVCKN 214 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----------------------------------~~~~~~~~~~~~Nv~gt~~ll~~~~~ 214 (439)
++|+||||||+.... .+.++++..+++|+.|+.++++++..
T Consensus 86 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 165 (311)
T 3o26_A 86 KTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP 165 (311)
T ss_dssp HHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhH
Confidence 689999999986321 12334567899999998888887743
Q ss_pred ----cCCCCeEEEecCCcccCCCCC-------------------------------CCCCCCCCCCCCCChHHHHHHHHH
Q 013602 215 ----ANPQPAIVWASSSSVYGLNTK-------------------------------VPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 215 ----~~~~~~~V~~SS~~v~g~~~~-------------------------------~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
.+ .++||++||...+..... ....+......+...|+.||++.+
T Consensus 166 ~l~~~~-~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~ 244 (311)
T 3o26_A 166 LLQLSD-SPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLN 244 (311)
T ss_dssp HHTTSS-SCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHH
T ss_pred hhccCC-CCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHH
Confidence 33 349999999665321100 000011111124568999999999
Q ss_pred HHHHHHHhHh-CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 260 EIAHTYNHIY-GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 260 ~~~~~~~~~~-gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
.+++.+++++ ++++++|+||.|.++-.. + . .....++.++.++.++..+.
T Consensus 245 ~~~~~la~e~~~i~v~~v~PG~v~T~~~~--------------~--~-------------~~~~~~~~a~~~~~~~~~~~ 295 (311)
T 3o26_A 245 AYTRVLANKIPKFQVNCVCPGLVKTEMNY--------------G--I-------------GNYTAEEGAEHVVRIALFPD 295 (311)
T ss_dssp HHHHHHHHHCTTSEEEEECCCSBCSGGGT--------------T--C-------------CSBCHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHhhcCCceEEEecCCceecCCcC--------------C--C-------------CCCCHHHHHHHHHHHHhCCC
Confidence 9999999986 799999999999876221 0 0 01457899999998877554
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=198.40 Aligned_cols=224 Identities=14% Similarity=0.088 Sum_probs=159.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+.+|++|||||+|+||.+++++|+++|++|++++|+.. .....+.....++.++.+|++|.++++++++.+
T Consensus 211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~------~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~ 284 (454)
T 3u0b_A 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA------AEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEH 284 (454)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGG------HHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCcc------HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998321 111222222336789999999999999888754
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|+||||||+.... .+.++++..+++|+.|+.++.+++.... ...+||++||...+..
T Consensus 285 ~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g----------- 353 (454)
T 3u0b_A 285 HGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAG----------- 353 (454)
T ss_dssp STTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHC-----------
T ss_pred cCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCC-----------
Confidence 489999999985432 2345566899999999999999987652 1339999999654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
......|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .......... ..+ ...+
T Consensus 354 -~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~-~~~----------l~r~ 418 (454)
T 3u0b_A 354 -NRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAI---PLATREVGRR-LNS----------LFQG 418 (454)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC-------------CHHHHH-SBT----------TSSC
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhc---chhhHHHHHh-hcc----------ccCC
Confidence 1346789999999999999998874 89999999999987643210 0000000000 001 1124
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
...+|+|++++.++...... ..|+++++.++.
T Consensus 419 g~pedvA~~v~fL~s~~a~~----------itG~~i~vdGG~ 450 (454)
T 3u0b_A 419 GQPVDVAELIAYFASPASNA----------VTGNTIRVCGQA 450 (454)
T ss_dssp BCHHHHHHHHHHHHCGGGTT----------CCSCEEEESSSB
T ss_pred CCHHHHHHHHHHHhCCccCC----------CCCcEEEECCcc
Confidence 57899999999998755432 345899987764
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=185.25 Aligned_cols=215 Identities=18% Similarity=0.097 Sum_probs=145.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|++|||||+|+||++++++|+++|++|++++|+.+. ......+.. ...++.++.+|++|.++++++++.+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDT----LRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDR 78 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999994321 111111111 1346889999999999998887653
Q ss_pred ----CccEEEEccc--cc------Cc---cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCC
Q 013602 174 ----SFTHVMHLAA--QA------GV---RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNT 234 (439)
Q Consensus 174 ----~~d~Vi~~Ag--~~------~~---~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~ 234 (439)
++|+|||||| .. .. ..+.++++..+++|+.++.++.+++. +.+. ++||++||...+..
T Consensus 79 ~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~-- 155 (260)
T 2qq5_A 79 EQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQ-GLIVVISSPGSLQY-- 155 (260)
T ss_dssp HHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTC-CEEEEECCGGGTSC--
T ss_pred hcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCC-cEEEEEcChhhcCC--
Confidence 5799999994 32 11 12234456788999999877766653 4443 49999999876531
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecC
Q 013602 235 KVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 235 ~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
.+...|+.+|++.+.+++.++.++ |+++++|+||.|.++...... .. ............
T Consensus 156 -----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~--~~~~~~~~~~~~--- 217 (260)
T 2qq5_A 156 -----------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHM--AK--EEVLQDPVLKQF--- 217 (260)
T ss_dssp -----------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC-------------------------
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhh--cc--ccccchhHHHHH---
Confidence 235689999999999999998764 899999999999887432100 00 000000000000
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
......+...+|+|.+++.++....
T Consensus 218 --~~~~~~~~~pe~va~~v~~l~s~~~ 242 (260)
T 2qq5_A 218 --KSAFSSAETTELSGKCVVALATDPN 242 (260)
T ss_dssp ------CHHHHHHHHHHHHHHHHTCTT
T ss_pred --HhhhccCCCHHHHHHHHHHHhcCcc
Confidence 0001113578999999999987543
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=188.41 Aligned_cols=174 Identities=16% Similarity=0.121 Sum_probs=133.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh---hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL---LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+|+||||||+|+||++++++|+++|++|++++|+............... ....++.++.+|++|.++++++++.+
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999999998886544332222111110 01257899999999999999999875
Q ss_pred -CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~-g~IV~isS~~~~~~------------ 148 (327)
T 1jtv_A 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGS-GRVLVTGSVGGLMG------------ 148 (327)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEEGGGTSC------------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEECCcccccC------------
Confidence 589999999975322 233456789999999999999886 33443 49999999776421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhH---hCCcEEEEeeccccCCC
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHI---YGLSLTGLRFFTVYGPW 285 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~---~gi~~~ilrpg~v~G~~ 285 (439)
......|+.||++.+.+++.++.+ +|+++++|+||.|.++.
T Consensus 149 ~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 149 LPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 123568999999999999999886 48999999999998764
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=186.78 Aligned_cols=270 Identities=15% Similarity=0.064 Sum_probs=173.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCC----CChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDY----YDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+++|+||||||+|+||++++++|+++|++|++.+|.... ..........+.+...+.. ..+|++|.++++++++.
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~-~~~D~~~~~~~~~~~~~ 85 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK-AVANYDSVEAGEKLVKT 85 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE-EEEECCCGGGHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCe-EEEeCCCHHHHHHHHHH
Confidence 678999999999999999999999999999998763211 0111111111112122222 35899999887776654
Q ss_pred c-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCC-cccCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSS-SVYGLNTKVPF 238 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~-~v~g~~~~~~~ 238 (439)
+ ++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+. ++||++||. +.++.
T Consensus 86 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-grIV~vsS~~~~~~~------ 158 (319)
T 1gz6_A 86 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNY-GRIIMTASASGIYGN------ 158 (319)
T ss_dssp HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECChhhccCC------
Confidence 3 689999999975432 234566789999999988888877 34443 399999995 44442
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
.+...|+.+|++.+.+++.++.++ |+++++|+||.+ .+... .. . +.
T Consensus 159 -------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~--~~----------------~-----~~ 207 (319)
T 1gz6_A 159 -------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTE--TV----------------M-----PE 207 (319)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTG--GG----------------S-----CH
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-ccccc--cc----------------C-----Ch
Confidence 245789999999999999998874 899999999987 32110 00 0 00
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVP 395 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~ 395 (439)
....++.++|+|.+++.++..+.. ..|++|++.++...... ....... .. + ..
T Consensus 208 ~~~~~~~p~dvA~~~~~l~s~~~~-----------~tG~~~~v~GG~~~~~~---------~~~~~~~-~~--~----~~ 260 (319)
T 1gz6_A 208 DLVEALKPEYVAPLVLWLCHESCE-----------ENGGLFEVGAGWIGKLR---------WERTLGA-IV--R----KR 260 (319)
T ss_dssp HHHHHSCGGGTHHHHHHHTSTTCC-----------CCSCEEEEETTEEEEEE---------EEECCCE-EC--C----BT
T ss_pred hhhccCCHHHHHHHHHHHhCchhh-----------cCCCEEEECCCeEEEEe---------eeeccce-ec--c----CC
Confidence 112356789999999998865322 23488888776321110 0000000 00 0 00
Q ss_pred cccCChHHHHH-------HcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 396 FTHANISLAQR-------ELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 396 ~~~~d~~k~~~-------~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
....|.+.+++ ..|+....++.+.+..+++...+...
T Consensus 261 ~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (319)
T 1gz6_A 261 NQPMTPEAVRDNWVKICDFSNASKPKSIQESTGGIIEVLHKIDS 304 (319)
T ss_dssp TBCCCHHHHHHTHHHHTCCTTCBCCCCHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHhhccccccCCCchHHHHHHHHHHHhhccc
Confidence 11123333322 24666556889999999887765544
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-21 Score=177.71 Aligned_cols=220 Identities=13% Similarity=0.063 Sum_probs=143.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEE-E--CCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHH-HHHhhccc-
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGL-D--NFNDYYDPSLKKARQALLERSGIFIVEGDINDMAL-LKKLFDVV- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-~~~~~~~~- 173 (439)
+|+||||||+|+||++++++|+++|++|+++ + |+.+ ......+.. .+..+. |..+.+. ++++.+..
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~-----~~~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~g 71 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAA-----ERQRFESEN--PGTIAL--AEQKPERLVDATLQHGE 71 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH-----HHHHHHHHS--TTEEEC--CCCCGGGHHHHHGGGSS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHH-----HHHHHHHHh--CCCccc--CHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999 5 8321 111111111 232222 3333322 23333333
Q ss_pred CccEEEEcccccCc---c----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGV---R----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~---~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|+||||||.... . .+.++++..+++|+.|+.++++++. +.+ .++||++||...+..
T Consensus 72 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~---------- 140 (244)
T 1zmo_A 72 AIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAG-GASVIFITSSVGKKP---------- 140 (244)
T ss_dssp CEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTSC----------
T ss_pred CCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECChhhCCC----------
Confidence 67999999997543 1 2234556799999999999888874 343 349999999776531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHH--HHHHHHHcCCCCceeecCCCCcce
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYF--FFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+......... .....+... ..+.
T Consensus 141 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~-~~p~---------- 207 (244)
T 1zmo_A 141 --LAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDR-DVPL---------- 207 (244)
T ss_dssp --CTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHH-HCTT----------
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccccchHHHHHHHhc-CCCC----------
Confidence 1345789999999999999998874 899999999999876420000000 011111110 0111
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+...+|+|++++.++...... ..|+.+.+.+|
T Consensus 208 ~r~~~pe~vA~~v~~l~s~~~~~----------~tG~~i~vdgG 241 (244)
T 1zmo_A 208 GRLGRPDEMGALITFLASRRAAP----------IVGQFFAFTGG 241 (244)
T ss_dssp CSCBCHHHHHHHHHHHHTTTTGG----------GTTCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHcCccccC----------ccCCEEEeCCC
Confidence 12577899999999998754432 23478888765
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=178.58 Aligned_cols=232 Identities=12% Similarity=0.013 Sum_probs=151.5
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHhCCCeEEEEECCCCCCC--hhHHHHHH---HhhhcCC----eEEEEcc------
Q 013602 97 RNGISVLVTGAA--GFVGTHVSAALKRRGDGVLGLDNFNDYYD--PSLKKARQ---ALLERSG----IFIVEGD------ 159 (439)
Q Consensus 97 ~~~~~VlItGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~--~~~~~~~~---~~~~~~~----v~~~~~D------ 159 (439)
+++|++|||||+ |+||++++++|+++|++|++++|+..... ........ ....... ...+.+|
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNP 85 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCSG
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccch
Confidence 678999999999 99999999999999999999987210000 00000000 0000011 2333333
Q ss_pred ------cCC--------HHHHHHhhccc-----CccEEEEcccccC------ccccccChhHHHHHHHHHHHHHHHHHHh
Q 013602 160 ------IND--------MALLKKLFDVV-----SFTHVMHLAAQAG------VRYAMQNPNSYVHSNIAGLVSLLEVCKN 214 (439)
Q Consensus 160 ------l~d--------~~~~~~~~~~~-----~~d~Vi~~Ag~~~------~~~~~~~~~~~~~~Nv~gt~~ll~~~~~ 214 (439)
++| .++++++++.+ ++|+||||||... ...+.++++..+++|+.|+.++++++.+
T Consensus 86 ~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 165 (297)
T 1d7o_A 86 EDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLP 165 (297)
T ss_dssp GGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred hhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 222 44566665543 6799999998632 1223455678999999999999999976
Q ss_pred cCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhH----hCCcEEEEeeccccCCCCCC
Q 013602 215 ANP-QPAIVWASSSSVYGLNTKVPFSEKDRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLSLTGLRFFTVYGPWGRP 288 (439)
Q Consensus 215 ~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~-~~Y~~sK~a~E~~~~~~~~~----~gi~~~ilrpg~v~G~~~~~ 288 (439)
.-. .++||++||...+.. .... ..|+.+|.+.+.+++.++.+ +|+++++|+||.|.++....
T Consensus 166 ~m~~~g~iv~isS~~~~~~------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~ 233 (297)
T 1d7o_A 166 IMNPGGASISLTYIASERI------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKA 233 (297)
T ss_dssp GEEEEEEEEEEECGGGTSC------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSC
T ss_pred HhccCceEEEEeccccccC------------CCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccchhhh
Confidence 421 139999999765421 1223 58999999999999998876 48999999999999986543
Q ss_pred CChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 289 DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
......+...+....+.. .+..++|+|++++.++...... ..|+++++.+|.
T Consensus 234 ~~~~~~~~~~~~~~~p~~------------r~~~pedvA~~v~~l~s~~~~~----------itG~~i~vdgG~ 285 (297)
T 1d7o_A 234 IGFIDTMIEYSYNNAPIQ------------KTLTADEVGNAAAFLVSPLASA----------ITGATIYVDNGL 285 (297)
T ss_dssp CSHHHHHHHHHHHHSSSC------------CCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTG
T ss_pred ccccHHHHHHhhccCCCC------------CCCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCc
Confidence 222222222222222211 2467899999999988654321 234899998774
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=190.11 Aligned_cols=208 Identities=21% Similarity=0.185 Sum_probs=151.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
..+++||||||+|+||.+++++|+++|++ |++++|+....... .....+.. ...++.++.+|++|.+++.++++.+
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~-~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~ 302 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGA-GELVAELEALGARTTVAACDVTDRESVRELLGGIG 302 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTH-HHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHH-HHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999995 99999965322111 11111111 2346889999999999999999876
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc-ccCCCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS-VYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~-v~g~~~~~~~~e~~~~~ 245 (439)
++|+||||||+.... .+.++....+++|+.|+.++.+++++.+.. +||++||.. ++|.
T Consensus 303 ~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~-~~V~~SS~a~~~g~------------- 368 (486)
T 2fr1_A 303 DDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLT-AFVLFSSFASAFGA------------- 368 (486)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTCC-------------
T ss_pred hcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCC-EEEEEcChHhcCCC-------------
Confidence 679999999975432 234455678999999999999999887644 999999954 4442
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHH
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDD 325 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~D 325 (439)
.....|+.+|...+.+.++++. .|+++++|+||.+++++.... .. ...+ ...-..+++.+|
T Consensus 369 ~g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~~~---------~~----~~~~-----~~~g~~~i~~e~ 429 (486)
T 2fr1_A 369 PGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEG---------PV----ADRF-----RRHGVIEMPPET 429 (486)
T ss_dssp TTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-------------------------C-----TTTTEECBCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCcccch---------hH----HHHH-----HhcCCCCCCHHH
Confidence 3457899999999999888765 499999999999987642110 00 0111 011245799999
Q ss_pred HHHHHHHHHhhch
Q 013602 326 IVKGCLAALDTAE 338 (439)
Q Consensus 326 va~a~~~~l~~~~ 338 (439)
+++++..++....
T Consensus 430 ~a~~l~~~l~~~~ 442 (486)
T 2fr1_A 430 ACRALQNALDRAE 442 (486)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998554
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=184.20 Aligned_cols=207 Identities=17% Similarity=0.142 Sum_probs=151.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.+++||||||+|+||.+++++|+++|+ +|++++|+....... .....+.. ...++.++.+|++|.++++++++..++
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~-~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~l 336 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGA-AELAEELRGHGCEVVHAACDVAERDALAALVTAYPP 336 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTH-HHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHH-HHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCC
Confidence 568999999999999999999999999 588899865322211 11111111 124688999999999999999988567
Q ss_pred cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCC-cccCCCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNA-NPQPAIVWASSS-SVYGLNTKVPFSEKDRTDQPAS 249 (439)
Q Consensus 176 d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~~V~~SS~-~v~g~~~~~~~~e~~~~~~p~~ 249 (439)
|+||||||+.... .+.++.+..+++|+.|+.++.+++... + .++||++||. +++|. ....
T Consensus 337 d~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~-~~~~V~~SS~a~~~g~-------------~g~~ 402 (511)
T 2z5l_A 337 NAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKG-LDAFVLFSSVTGTWGN-------------AGQG 402 (511)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTT-CCCEEEEEEGGGTTCC-------------TTBH
T ss_pred cEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccC-CCEEEEEeCHHhcCCC-------------CCCH
Confidence 9999999985432 223445678999999999999998766 4 3499999996 44542 3457
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHH
Q 013602 250 LYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a 329 (439)
.|+.+|.+.+.++++++. .|+++++|+||.+.+.+.... . ....+.. .-..+++.+|++++
T Consensus 403 ~YaaaKa~ld~la~~~~~-~gi~v~sv~pG~~~~tgm~~~-~---~~~~~~~--------------~g~~~l~~e~~a~~ 463 (511)
T 2z5l_A 403 AYAAANAALDALAERRRA-AGLPATSVAWGLWGGGGMAAG-A---GEESLSR--------------RGLRAMDPDAAVDA 463 (511)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTCCCEEEEECCBCSTTCCCC-H---HHHHHHH--------------HTBCCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCcEEEEECCcccCCccccc-c---cHHHHHh--------------cCCCCCCHHHHHHH
Confidence 899999999999998754 499999999998843332211 1 1111110 01235789999999
Q ss_pred HHHHHhhch
Q 013602 330 CLAALDTAE 338 (439)
Q Consensus 330 ~~~~l~~~~ 338 (439)
+..++....
T Consensus 464 l~~al~~~~ 472 (511)
T 2z5l_A 464 LLGAMGRND 472 (511)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhCCC
Confidence 999998655
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-19 Score=180.95 Aligned_cols=207 Identities=19% Similarity=0.166 Sum_probs=150.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++||||||+|+||.+++++|+++|+ +|++++|+........ +...+. ....++.++.+|++|.++++++++.+
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~-~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~ 317 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAA-ELRAELEQLGVRVTIAACDAADREALAALLAELPED 317 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHH-HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHH-HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999999998 7888888543222221 111111 12347899999999999999999875
Q ss_pred -CccEEEEccccc-Cc----cccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc-ccCCCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQA-GV----RYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS-VYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 174 -~~d~Vi~~Ag~~-~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~-v~g~~~~~~~~e~~~~~~ 246 (439)
++|+||||||+. .. ..+.++.+..+++|+.|+.++.+++...+.. +||++||.. ++|. .
T Consensus 318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~-~iV~~SS~a~~~g~-------------~ 383 (496)
T 3mje_A 318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLD-AFVLFSSGAAVWGS-------------G 383 (496)
T ss_dssp SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTTC-------------T
T ss_pred CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCC-EEEEEeChHhcCCC-------------C
Confidence 589999999986 22 1233445689999999999999999988754 999999954 4431 3
Q ss_pred CCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHH
Q 013602 247 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDI 326 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dv 326 (439)
....|+.+|.+.+.+.++++. .|+++++|.||.+.+++...+. .....+.+. -...+..++.
T Consensus 384 g~~~YaAaKa~ldala~~~~~-~Gi~v~sV~pG~w~~~gm~~~~---~~~~~l~~~--------------g~~~l~pe~~ 445 (496)
T 3mje_A 384 GQPGYAAANAYLDALAEHRRS-LGLTASSVAWGTWGEVGMATDP---EVHDRLVRQ--------------GVLAMEPEHA 445 (496)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH-TTCCCEEEEECEESSSCC---------CHHHHHT--------------TEEEECHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCcccCCccccCh---HHHHHHHhc--------------CCCCCCHHHH
Confidence 467899999999999988765 5999999999998776542111 000111111 1124678999
Q ss_pred HHHHHHHHhhch
Q 013602 327 VKGCLAALDTAE 338 (439)
Q Consensus 327 a~a~~~~l~~~~ 338 (439)
+.++..++....
T Consensus 446 ~~~l~~~l~~~~ 457 (496)
T 3mje_A 446 LGALDQMLENDD 457 (496)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHcCCC
Confidence 999999987655
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-20 Score=178.82 Aligned_cols=174 Identities=11% Similarity=0.009 Sum_probs=124.1
Q ss_pred CCEEEEECCCC--hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHH----HHhh-----hcCCeEEEEcccCCH--H-
Q 013602 99 GISVLVTGAAG--FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKAR----QALL-----ERSGIFIVEGDINDM--A- 164 (439)
Q Consensus 99 ~~~VlItGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~-----~~~~v~~~~~Dl~d~--~- 164 (439)
+|++|||||++ +||.+++++|+++|++|++.+|+....-....... .... ....+.++.+|+++. +
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~ 81 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence 68999999875 99999999999999999988872100000000000 0000 112367888999887 6
Q ss_pred -----------------HHHHhhccc-----CccEEEEcccccC--c----cccccChhHHHHHHHHHHHHHHHHHHhcC
Q 013602 165 -----------------LLKKLFDVV-----SFTHVMHLAAQAG--V----RYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216 (439)
Q Consensus 165 -----------------~~~~~~~~~-----~~d~Vi~~Ag~~~--~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~ 216 (439)
+++++++.+ ++|+||||||+.. . ..+.++++..+++|+.|+.++.+++...-
T Consensus 82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m 161 (329)
T 3lt0_A 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 777777654 6899999999632 1 12344567899999999999999986542
Q ss_pred C-CCeEEEecCCcccCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHhH----hCCcEEEEeeccccCC
Q 013602 217 P-QPAIVWASSSSVYGLNTKVPFSEKDRTDQPAS-LYAATKKAGEEIAHTYNHI----YGLSLTGLRFFTVYGP 284 (439)
Q Consensus 217 ~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~-~Y~~sK~a~E~~~~~~~~~----~gi~~~ilrpg~v~G~ 284 (439)
. ..+||++||...+. ...... .|+.||++.+.+++.++.+ .|+++++|+||.|..+
T Consensus 162 ~~~g~Iv~isS~~~~~------------~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 162 KPQSSIISLTYHASQK------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp EEEEEEEEEECGGGTS------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred hhCCeEEEEeCccccC------------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 1 13999999976532 112333 8999999999999998776 4899999999999765
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.6e-19 Score=168.83 Aligned_cols=232 Identities=16% Similarity=0.036 Sum_probs=147.2
Q ss_pred CCCCEEEEECC--CChHHHHHHHHHHhCCCeEEEEECCCCCCC--hhHHHH---HHHhhhcCC----eEEEEcc------
Q 013602 97 RNGISVLVTGA--AGFVGTHVSAALKRRGDGVLGLDNFNDYYD--PSLKKA---RQALLERSG----IFIVEGD------ 159 (439)
Q Consensus 97 ~~~~~VlItGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~----v~~~~~D------ 159 (439)
+++|++||||| +|+||.+++++|+++|++|++++|+..... ...... ......... +.++.+|
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDKP 86 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSST
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccccccccc
Confidence 57899999999 899999999999999999999997210000 000000 001111111 2444443
Q ss_pred ------cCC--------HHHHHHhhccc-----CccEEEEcccccC---c---cccccChhHHHHHHHHHHHHHHHHHHh
Q 013602 160 ------IND--------MALLKKLFDVV-----SFTHVMHLAAQAG---V---RYAMQNPNSYVHSNIAGLVSLLEVCKN 214 (439)
Q Consensus 160 ------l~d--------~~~~~~~~~~~-----~~d~Vi~~Ag~~~---~---~~~~~~~~~~~~~Nv~gt~~ll~~~~~ 214 (439)
++| .++++++++.+ ++|+||||||... . ..+.++++..+++|+.|+.++++++..
T Consensus 87 ~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 166 (315)
T 2o2s_A 87 EDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGP 166 (315)
T ss_dssp TSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHST
T ss_pred chhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 343 44566666543 6899999999642 1 123445668999999999999999865
Q ss_pred cCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhH----hCCcEEEEeeccccCCCCC-
Q 013602 215 ANP-QPAIVWASSSSVYGLNTKVPFSEKDRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLSLTGLRFFTVYGPWGR- 287 (439)
Q Consensus 215 ~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~-~~Y~~sK~a~E~~~~~~~~~----~gi~~~ilrpg~v~G~~~~- 287 (439)
.-. .++||++||...+.. .... ..|+.+|.+.+.+++.++.+ .|+++++|+||.|..+...
T Consensus 167 ~m~~~g~Iv~isS~~~~~~------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~ 234 (315)
T 2o2s_A 167 IMNEGGSAVTLSYLAAERV------------VPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAASA 234 (315)
T ss_dssp TEEEEEEEEEEEEGGGTSC------------CTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHHHH
T ss_pred HHhcCCEEEEEeccccccc------------CCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhhhh
Confidence 411 139999999765421 1123 47999999999999998776 4899999999999764110
Q ss_pred ----C-CChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 288 ----P-DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 288 ----~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
. ......+...+.... +. .-+...+|+|.+++.++...... ..|+.+.+.+|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~--p~----------~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 292 (315)
T 2o2s_A 235 IGKSGEKSFIDYAIDYSYNNA--PL----------RRDLHSDDVGGAALFLLSPLARA----------VSGVTLYVDNGL 292 (315)
T ss_dssp TTCSSSSCHHHHHHHHHHHHS--SS----------CCCCCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTG
T ss_pred ccccccchhHHHHHHHHhccC--CC----------CCCCCHHHHHHHHHHHhCchhcc----------CcCCEEEECCCe
Confidence 0 000011111111111 11 12467899999999998754321 344888887764
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=189.58 Aligned_cols=203 Identities=16% Similarity=0.028 Sum_probs=136.0
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC-----ChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY-----DPSLKKARQALLERSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~-----~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~ 169 (439)
..+++|+||||||+|+||++++++|+++|++|++++|..... ......... .....+.. ..+|++|.++++++
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~-~i~~~~~~-~~~D~~d~~~~~~~ 92 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVD-EIRKAGGE-AVADYNSVIDGAKV 92 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHH-HHHHTTCC-EEECCCCGGGHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHH-HHHHhCCe-EEEEeCCHHHHHHH
Confidence 347899999999999999999999999999999998732110 011111111 11122222 34799999988888
Q ss_pred hccc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcc-cCCCCC
Q 013602 170 FDVV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSV-YGLNTK 235 (439)
Q Consensus 170 ~~~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v-~g~~~~ 235 (439)
++.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+. .+||++||.+. ++.
T Consensus 93 ~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~-g~IV~isS~a~~~~~--- 168 (613)
T 3oml_A 93 IETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNY-GRIIMTSSNSGIYGN--- 168 (613)
T ss_dssp HC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCHHHHHCC---
T ss_pred HHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEECCHHHcCCC---
Confidence 8765 689999999985432 234566789999999999998887 44442 39999999544 331
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCC
Q 013602 236 VPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 236 ~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
.....|+.+|++.+.+++.++.++ |+++++|.||.+-.. ..+..
T Consensus 169 ----------~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t~~---------------~~~~~-------- 215 (613)
T 3oml_A 169 ----------FGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAASRM---------------TEGIL-------- 215 (613)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------CCCC--------
T ss_pred ----------CCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCChh---------------hhhcc--------
Confidence 346789999999999999999885 899999999864211 01100
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
.......+..+|+|.+++.++...
T Consensus 216 -~~~~~~~~~pedvA~~v~~L~s~~ 239 (613)
T 3oml_A 216 -PDILFNELKPKLIAPVVAYLCHES 239 (613)
T ss_dssp -CHHHHTTCCGGGTHHHHHHTTSTT
T ss_pred -chhhhhcCCHHHHHHHHHHhcCCC
Confidence 011123457899999999887655
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-19 Score=171.84 Aligned_cols=237 Identities=13% Similarity=-0.009 Sum_probs=132.4
Q ss_pred CCCCEEEEECC--CChHHHHHHHHHHhCCCeEEEEECCC-----------CCCChhHHH------HHHHhhhcC-----C
Q 013602 97 RNGISVLVTGA--AGFVGTHVSAALKRRGDGVLGLDNFN-----------DYYDPSLKK------ARQALLERS-----G 152 (439)
Q Consensus 97 ~~~~~VlItGa--tG~IG~~l~~~L~~~G~~V~~~~r~~-----------~~~~~~~~~------~~~~~~~~~-----~ 152 (439)
+.+|++||||| +++||.++++.|+++|++|++++|+. +..+..... ...+..... .
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVF 86 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------CC
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccccc
Confidence 57899999999 89999999999999999999998731 000000000 000000000 1
Q ss_pred eEEEEcc------------cCC--------HHHHHHhhccc-----CccEEEEcccccC--c----cccccChhHHHHHH
Q 013602 153 IFIVEGD------------IND--------MALLKKLFDVV-----SFTHVMHLAAQAG--V----RYAMQNPNSYVHSN 201 (439)
Q Consensus 153 v~~~~~D------------l~d--------~~~~~~~~~~~-----~~d~Vi~~Ag~~~--~----~~~~~~~~~~~~~N 201 (439)
+.++.+| ++| .++++++++.+ ++|+||||||... . ..+.++++..+++|
T Consensus 87 ~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN 166 (319)
T 2ptg_A 87 DKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSS 166 (319)
T ss_dssp SEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHH
T ss_pred cccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHh
Confidence 2444443 333 33566655543 6899999999642 1 12344566899999
Q ss_pred HHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhH----hCCcEEE
Q 013602 202 IAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLSLTG 275 (439)
Q Consensus 202 v~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~-~~Y~~sK~a~E~~~~~~~~~----~gi~~~i 275 (439)
+.|+.++++++...-. .++||++||...+.. .... ..|+.+|++.+.+++.++.+ +|+++++
T Consensus 167 ~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~ 234 (319)
T 2ptg_A 167 SYSFVSLLQHFLPLMKEGGSALALSYIASEKV------------IPGYGGGMSSAKAALESDCRTLAFEAGRARAVRVNC 234 (319)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEEEEECC------------------------------THHHHHHHHHHHHHHHCCEEEE
T ss_pred hHHHHHHHHHHHHHHhcCceEEEEeccccccc------------cCccchhhHHHHHHHHHHHHHHHHHhccccCeeEEE
Confidence 9999999999876421 139999999765321 1123 57999999999999998776 4899999
Q ss_pred EeeccccCCCCCCCCh--HHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCC
Q 013602 276 LRFFTVYGPWGRPDMA--YFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQL 353 (439)
Q Consensus 276 lrpg~v~G~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~ 353 (439)
|+||.|..+....... ...+..... ..+ ........+...+|+|.+++.++...... ..|
T Consensus 235 v~PG~v~T~~~~~~~~~~~~~~~~~~~-----~~~---~~~~p~~r~~~peevA~~v~~L~s~~~~~----------itG 296 (319)
T 2ptg_A 235 ISAGPLKSRAASAIGKAGDKTFIDLAI-----DYS---EANAPLQKELESDDVGRAALFLLSPLARA----------VTG 296 (319)
T ss_dssp EEECCCC---------------------------------------CCCHHHHHHHHHHHTSGGGTT----------CCS
T ss_pred EeeCCccChhhhhcccccchhhHHHHH-----HHH---hccCCCCCCCCHHHHHHHHHHHhCcccCC----------ccC
Confidence 9999998763211000 000000000 000 00011123568899999999998754322 345
Q ss_pred cEEEecCCCc
Q 013602 354 RVFNLGNTSP 363 (439)
Q Consensus 354 ~~~~i~~~~~ 363 (439)
+++.+.+|..
T Consensus 297 ~~i~vdGG~~ 306 (319)
T 2ptg_A 297 ATLYVDNGLH 306 (319)
T ss_dssp CEEEESTTCT
T ss_pred CEEEECCCce
Confidence 8898877643
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-19 Score=179.92 Aligned_cols=211 Identities=18% Similarity=0.126 Sum_probs=147.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCe-EEEE-ECCCCCC---------ChhHHHHHHHh-hhcCCeEEEEcccCCHH
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDG-VLGL-DNFNDYY---------DPSLKKARQAL-LERSGIFIVEGDINDMA 164 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~-~r~~~~~---------~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~ 164 (439)
..+++||||||+|+||.+++++|+++|++ |+++ +|+.... .+.......+. .....+.++.+|++|.+
T Consensus 249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~ 328 (525)
T 3qp9_A 249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE 328 (525)
T ss_dssp CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence 35789999999999999999999999998 5555 6753210 01111111111 12346899999999999
Q ss_pred HHHHhhccc----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCC----CCeEEEecCCcccCC
Q 013602 165 LLKKLFDVV----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANP----QPAIVWASSSSVYGL 232 (439)
Q Consensus 165 ~~~~~~~~~----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~----~~~~V~~SS~~v~g~ 232 (439)
+++++++.+ ++|+||||||+.... .+.++.+..+++|+.|+.++.+++..... ..+||++||...+-.
T Consensus 329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g 408 (525)
T 3qp9_A 329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWG 408 (525)
T ss_dssp HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTC
T ss_pred HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCC
Confidence 999999875 689999999985432 23445668999999999999999986651 239999999654321
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCC
Q 013602 233 NTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 233 ~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
......|+.+|.+.+.+.++++. .|+++++|+||.+-++-.. +. .....+... .
T Consensus 409 ------------~~g~~~YaaaKa~l~~lA~~~~~-~gi~v~sI~pG~~~tgm~~-~~---~~~~~~~~~-g-------- 462 (525)
T 3qp9_A 409 ------------GAGQGAYAAGTAFLDALAGQHRA-DGPTVTSVAWSPWEGSRVT-EG---ATGERLRRL-G-------- 462 (525)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHTSCCS-SCCEEEEEEECCBTTSGGG-SS---HHHHHHHHT-T--------
T ss_pred ------------CCCCHHHHHHHHHHHHHHHHHHh-CCCCEEEEECCcccccccc-ch---hhHHHHHhc-C--------
Confidence 13467899999999999877655 4999999999999322110 11 111111111 1
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
...+..+++++++..++....
T Consensus 463 -----~~~l~pee~a~~l~~~l~~~~ 483 (525)
T 3qp9_A 463 -----LRPLAPATALTALDTALGHGD 483 (525)
T ss_dssp -----BCCBCHHHHHHHHHHHHHHTC
T ss_pred -----CCCCCHHHHHHHHHHHHhCCC
Confidence 124668999999999998655
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=171.03 Aligned_cols=211 Identities=15% Similarity=0.129 Sum_probs=142.3
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEccc-CCHHH-HHHhhcc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDI-NDMAL-LKKLFDV 172 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl-~d~~~-~~~~~~~ 172 (439)
.+++|+++||||+++||.++++.|+++|++|++.+|.. . .....+.. ....+..+.+|+ .+.+. ++++.+.
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~----~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~ 392 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--A----TKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDK 392 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--C----HHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--H----HHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999988621 1 11111111 123466778898 55544 3333333
Q ss_pred c-CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcc-cCCCCCCCCCCCC
Q 013602 173 V-SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSV-YGLNTKVPFSEKD 242 (439)
Q Consensus 173 ~-~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v-~g~~~~~~~~e~~ 242 (439)
. ++|+||||||+.... .+.++++..+++|+.|+.++.+++. +.+ ..+||++||... ++.
T Consensus 393 ~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~ag~~~~---------- 461 (604)
T 2et6_A 393 YGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQ-FGRIINITSTSGIYGN---------- 461 (604)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCHHHHSCC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhhccCC----------
Confidence 3 689999999975432 2345567899999999888877764 333 249999999653 221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
.....|+.||++...+++.++.++ |+++++|.||. ..+-. ....... ...
T Consensus 462 ---~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~----------~~~~~~~-------------~~~ 514 (604)
T 2et6_A 462 ---FGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMT----------LSIMREQ-------------DKN 514 (604)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC--------------------------------CC
T ss_pred ---CCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCccc----------cccCchh-------------hcc
Confidence 235689999999999999998884 89999999983 22210 0000000 012
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
....+|+|.+++.++..... ..|+++.+.+|
T Consensus 515 ~~~pe~vA~~v~~L~s~~~~-----------itG~~~~vdGG 545 (604)
T 2et6_A 515 LYHADQVAPLLVYLGTDDVP-----------VTGETFEIGGG 545 (604)
T ss_dssp SSCGGGTHHHHHHTTSTTCC-----------CCSCEEEEETT
T ss_pred CCCHHHHHHHHHHHhCCccC-----------CCCcEEEECCC
Confidence 34689999999988754332 23367777665
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-18 Score=168.14 Aligned_cols=176 Identities=14% Similarity=0.080 Sum_probs=127.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-------GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFD 171 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~ 171 (439)
.|+|+||||+||||++++..|+++|+ +|+++++... ..........+....+.++ .|+.+.+.+.++++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~---~~~~~g~~~dl~~~~~~~~-~di~~~~~~~~a~~ 79 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA---MKALEGVVMELEDCAFPLL-AGLEATDDPKVAFK 79 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG---HHHHHHHHHHHHTTTCTTE-EEEEEESCHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCc---hhhccchhhhhhccccccc-CCeEeccChHHHhC
Confidence 36899999999999999999999996 8999987321 0000111111122222333 68877777788888
Q ss_pred ccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc-ccCCCCCCCCCCCCC-CCCCC
Q 013602 172 VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSS-VYGLNTKVPFSEKDR-TDQPA 248 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~-v~g~~~~~~~~e~~~-~~~p~ 248 (439)
++ |+|||+||..... ..++.+.+++|+.++.++++++++.+ +..+||++|+.. +.. +..++.. ...|.
T Consensus 80 ~~--D~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~~~~~~p~ 150 (327)
T 1y7t_A 80 DA--DYALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKNAPGLNPR 150 (327)
T ss_dssp TC--SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHTCTTSCGG
T ss_pred CC--CEEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHHcCCCChh
Confidence 77 9999999975432 35677899999999999999999986 555888888743 100 1111111 12456
Q ss_pred ChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 249 SLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 249 ~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
..|+.+|+..|++...+++.+|+++.++||++||||++.
T Consensus 151 ~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~ 189 (327)
T 1y7t_A 151 NFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS 189 (327)
T ss_dssp GEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred heeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence 789999999999999999889999999999999999764
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-17 Score=157.78 Aligned_cols=178 Identities=12% Similarity=-0.069 Sum_probs=128.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHh-CCCeEEEEECCCCCCChh--------HHHHHHH-hhhcCCeEEEEcccCCHHHH
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKR-RGDGVLGLDNFNDYYDPS--------LKKARQA-LLERSGIFIVEGDINDMALL 166 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~--------~~~~~~~-~~~~~~v~~~~~Dl~d~~~~ 166 (439)
..+|++|||||+++||.++++.|++ +|++|++++|+.+..... ....... ......+..+.+|++|.+++
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v 124 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK 124 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 4679999999999999999999999 999999999876543321 0111111 11234678899999999999
Q ss_pred HHhhccc-----CccEEEEcccccC--------------------------------------ccccccChhHHHHHHHH
Q 013602 167 KKLFDVV-----SFTHVMHLAAQAG--------------------------------------VRYAMQNPNSYVHSNIA 203 (439)
Q Consensus 167 ~~~~~~~-----~~d~Vi~~Ag~~~--------------------------------------~~~~~~~~~~~~~~Nv~ 203 (439)
+++++.+ ++|+||||||... ...++++++..+++|..
T Consensus 125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~ 204 (405)
T 3zu3_A 125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG 204 (405)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence 8888765 6899999999731 01133445678888887
Q ss_pred HHH-HHHHHHHhcCC---CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH---h-CCcEEE
Q 013602 204 GLV-SLLEVCKNANP---QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI---Y-GLSLTG 275 (439)
Q Consensus 204 gt~-~ll~~~~~~~~---~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~---~-gi~~~i 275 (439)
++. .+++++..... ..+||++||.+..-. .+......|+++|.+.+.+++.++.+ . |+++++
T Consensus 205 ~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~----------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRVNa 274 (405)
T 3zu3_A 205 EDWQMWIDALLDAGVLAEGAQTTAFTYLGEKIT----------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARV 274 (405)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGG----------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEEEE
T ss_pred hHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCc----------CCCccchHHHHHHHHHHHHHHHHHHHhCcccCeEEEE
Confidence 765 55665432211 138999999764210 01112278999999999999999988 4 899999
Q ss_pred EeeccccCC
Q 013602 276 LRFFTVYGP 284 (439)
Q Consensus 276 lrpg~v~G~ 284 (439)
|.||.|-.+
T Consensus 275 VaPG~i~T~ 283 (405)
T 3zu3_A 275 SVLKAVVSQ 283 (405)
T ss_dssp EECCCCCCH
T ss_pred EEeCCCcCc
Confidence 999998765
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-17 Score=169.59 Aligned_cols=231 Identities=15% Similarity=0.120 Sum_probs=150.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC-----ChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY-----DPSLKKARQALLERSGIFIVEGDINDMALLKKLFD 171 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~-----~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~ 171 (439)
+++|+++||||+++||+++++.|+++|++|++.+|+.... .........+ ....+... .+|++|.++++++++
T Consensus 6 l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~-i~~~g~~~-~~d~~d~~~~~~~v~ 83 (604)
T 2et6_A 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDE-IVKNGGVA-VADYNNVLDGDKIVE 83 (604)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHH-HHHTTCEE-EEECCCTTCHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHH-HHhcCCeE-EEEcCCHHHHHHHHH
Confidence 6789999999999999999999999999999998754110 0111111111 11112222 357776654444443
Q ss_pred c----c-CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcc-cCCCCCCC
Q 013602 172 V----V-SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSV-YGLNTKVP 237 (439)
Q Consensus 172 ~----~-~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v-~g~~~~~~ 237 (439)
. . ++|+||||||+.... .+.++++..+++|+.|+.++.+++. +.+. .+||++||... ++.
T Consensus 84 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~-G~IVnisS~ag~~~~----- 157 (604)
T 2et6_A 84 TAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKY-GRIVNTSSPAGLYGN----- 157 (604)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECCHHHcCCC-----
Confidence 3 2 689999999975332 3345667899999999888777663 4442 39999999543 331
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCC
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
.....|+.||.+.+.+++.++.++ |+++++|.|+ +..+ +.... .. .
T Consensus 158 --------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~----------m~~~~---~~-~-------- 206 (604)
T 2et6_A 158 --------FGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSR----------MTESI---MP-P-------- 206 (604)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCH----------HHHTT---SC-H--------
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCc----------ccccc---CC-h--------
Confidence 235689999999999999999884 8999999996 2111 11100 00 0
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC------------------CcccHHHHHHHHHHH
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT------------------SPVPVSDLVSILERL 376 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~------------------~~~t~~el~~~l~~~ 376 (439)
........+|+|.+++.++..... ..|+++.+.+| ...+..++.+.+.+.
T Consensus 207 -~~~~~~~pe~vA~~v~~L~s~~~~-----------itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 274 (604)
T 2et6_A 207 -PMLEKLGPEKVAPLVLYLSSAENE-----------LTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEI 274 (604)
T ss_dssp -HHHTTCSHHHHHHHHHHHTSSSCC-----------CCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHH
T ss_pred -hhhccCCHHHHHHHHHHHhCCccc-----------CCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHh
Confidence 001124689999999998865422 22355555443 346778888877776
Q ss_pred hC
Q 013602 377 LK 378 (439)
Q Consensus 377 ~g 378 (439)
..
T Consensus 275 ~~ 276 (604)
T 2et6_A 275 LD 276 (604)
T ss_dssp TC
T ss_pred hc
Confidence 54
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-17 Score=160.02 Aligned_cols=217 Identities=11% Similarity=-0.061 Sum_probs=142.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHh-CCCeEEEEECCCCCCChhH--------HHH-HHHhhhcCCeEEEEcccCCHHHHH
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKR-RGDGVLGLDNFNDYYDPSL--------KKA-RQALLERSGIFIVEGDINDMALLK 167 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~--------~~~-~~~~~~~~~v~~~~~Dl~d~~~~~ 167 (439)
.+|++|||||+++||.++++.|++ .|++|++++|+.+...... ... .........+..+.+|++|.++++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v~ 139 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAARA 139 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHHH
Confidence 579999999999999999999999 9999999999776543210 000 111112346788999999999888
Q ss_pred Hhhccc------CccEEEEccccc-------------Cc-------------------------cccccChhHHHHHHHH
Q 013602 168 KLFDVV------SFTHVMHLAAQA-------------GV-------------------------RYAMQNPNSYVHSNIA 203 (439)
Q Consensus 168 ~~~~~~------~~d~Vi~~Ag~~-------------~~-------------------------~~~~~~~~~~~~~Nv~ 203 (439)
++++.+ ++|+||||||.. .. ..++++++..+++|..
T Consensus 140 ~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~~ 219 (422)
T 3s8m_A 140 QVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGG 219 (422)
T ss_dssp HHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhch
Confidence 777542 579999999862 00 1123344567777776
Q ss_pred HHH-HHHHHHHhcCC---CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEE
Q 013602 204 GLV-SLLEVCKNANP---QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGL 276 (439)
Q Consensus 204 gt~-~ll~~~~~~~~---~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~il 276 (439)
++. .+++++..... ..+||++||.+..-. .+......|++||.+.+.+++.++.++ |+++++|
T Consensus 220 ~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~----------~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVNaV 289 (422)
T 3s8m_A 220 QDWELWIDALEGAGVLADGARSVAFSYIGTEIT----------WPIYWHGALGKAKVDLDRTAQRLNARLAKHGGGANVA 289 (422)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGG----------HHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEEeCchhhcc----------CCCccchHHHHHHHHHHHHHHHHHHHhCccCEEEEEE
Confidence 654 56666543221 138999999764210 000112689999999999999999885 8999999
Q ss_pred eeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 277 RFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 277 rpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
.||.|-.+-.......+.....+.+ +.... | ..+|++.++..++....
T Consensus 290 aPG~i~T~~~~~ip~~~~~~~~~~~--~m~r~---G---------~pEdva~~v~~L~sd~l 337 (422)
T 3s8m_A 290 VLKSVVTQASAAIPVMPLYISMVYK--IMKEK---G---------LHEGTIEQLDRLFRERL 337 (422)
T ss_dssp EECCCCCTTGGGSTHHHHHHHHHHH--HHHHT---T---------CCCCHHHHHHHHHHHTT
T ss_pred EcCCCcChhhhcCCCChHHHHHHHh--hhcCC---c---------ChHHHHHHHHHHhcchh
Confidence 9999987643211111111111111 11111 1 13889999999887654
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-16 Score=174.17 Aligned_cols=210 Identities=15% Similarity=0.117 Sum_probs=143.7
Q ss_pred cCCCCEEEEECCCCh-HHHHHHHHHHhCCCeEEEEE-CCCCCCChhHHHHHHHhhh--cCCeEEEEcccCCHHHHHHhhc
Q 013602 96 ARNGISVLVTGAAGF-VGTHVSAALKRRGDGVLGLD-NFNDYYDPSLKKARQALLE--RSGIFIVEGDINDMALLKKLFD 171 (439)
Q Consensus 96 ~~~~~~VlItGatG~-IG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~ 171 (439)
.+.+|+||||||+++ ||.++++.|+++|++|++++ |+.......... ...... ...+.++.+|++|.++++++++
T Consensus 672 ~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~e-L~~~~~~~g~~v~~v~~DVsd~~sV~alv~ 750 (1887)
T 2uv8_A 672 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQS-IYAKYGAKGSTLIVVPFNQGSKQDVEALIE 750 (1887)
T ss_dssp CCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHH-HHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHH-HHHHhhcCCCeEEEEEecCCCHHHHHHHHH
Confidence 467899999999998 99999999999999999985 532211000011 111111 2468899999999999988876
Q ss_pred c---------c--CccEEEEcccccCcc-c----c--ccChhHHHHHHHHHHHHHHHHHHhcCC-----CCeEEEecCCc
Q 013602 172 V---------V--SFTHVMHLAAQAGVR-Y----A--MQNPNSYVHSNIAGLVSLLEVCKNANP-----QPAIVWASSSS 228 (439)
Q Consensus 172 ~---------~--~~d~Vi~~Ag~~~~~-~----~--~~~~~~~~~~Nv~gt~~ll~~~~~~~~-----~~~~V~~SS~~ 228 (439)
. . ++|+||||||+.... . + .++++..+++|+.|+.+++++++.... ..+||++||..
T Consensus 751 ~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~a 830 (1887)
T 2uv8_A 751 FIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH 830 (1887)
T ss_dssp HHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCT
T ss_pred HHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChH
Confidence 3 2 489999999985432 1 1 234578999999999999998743211 13999999965
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHhHhC--CcEEEEeeccccCCCC-CCCChHHHHHHHHHcCCC
Q 013602 229 VYGLNTKVPFSEKDRTDQPASLYAATKKAGEEI-AHTYNHIYG--LSLTGLRFFTVYGPWG-RPDMAYFFFTRDILNRKS 304 (439)
Q Consensus 229 v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~-~~~~~~~~g--i~~~ilrpg~v~G~~~-~~~~~~~~~~~~~~~g~~ 304 (439)
.+. .....|+.+|++.+.+ .+.++.+++ +++++|+||.|.|... ...... ......
T Consensus 831 g~~--------------gg~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~~~----~~~~~~-- 890 (1887)
T 2uv8_A 831 GTF--------------GGDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNII----AEGIEK-- 890 (1887)
T ss_dssp TCS--------------SCBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----CCTT----HHHHHT--
T ss_pred hcc--------------CCCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccchhH----HHHHHh--
Confidence 431 1346899999999998 777776653 9999999999985321 100000 111111
Q ss_pred CceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 305 IPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 305 ~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
.++ -+...+|+|.+++.++...
T Consensus 891 ~pl-----------r~~sPEEVA~avlfLaSd~ 912 (1887)
T 2uv8_A 891 MGV-----------RTFSQKEMAFNLLGLLTPE 912 (1887)
T ss_dssp TSC-----------CCEEHHHHHHHHHGGGSHH
T ss_pred cCC-----------CCCCHHHHHHHHHHHhCCC
Confidence 111 1347899999999988665
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.7e-16 Score=172.53 Aligned_cols=209 Identities=16% Similarity=0.100 Sum_probs=142.4
Q ss_pred cCCCCEEEEECCCCh-HHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHH---Hhhh--cCCeEEEEcccCCHHHHHHh
Q 013602 96 ARNGISVLVTGAAGF-VGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQ---ALLE--RSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 96 ~~~~~~VlItGatG~-IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~--~~~v~~~~~Dl~d~~~~~~~ 169 (439)
.+.+|+||||||+|+ ||.++++.|+++|++|+++++... ........ .... ...+.++.+|++|.++++++
T Consensus 649 ~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~---~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~al 725 (1878)
T 2uv9_A 649 TFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFS---RQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEAL 725 (1878)
T ss_dssp CCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCC---HHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCh---HHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHH
Confidence 467899999999999 999999999999999999964221 11111111 1111 23688999999999999888
Q ss_pred hcc-------c--CccEEEEcccccCcc-c----c--ccChhHHHHHHHHHHHHHHHHHH--hcC---CCCeEEEecCCc
Q 013602 170 FDV-------V--SFTHVMHLAAQAGVR-Y----A--MQNPNSYVHSNIAGLVSLLEVCK--NAN---PQPAIVWASSSS 228 (439)
Q Consensus 170 ~~~-------~--~~d~Vi~~Ag~~~~~-~----~--~~~~~~~~~~Nv~gt~~ll~~~~--~~~---~~~~~V~~SS~~ 228 (439)
++. . ++|+||||||+.... . + .++++..+++|+.|+.+++++++ ..- ...+||++||..
T Consensus 726 v~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~a 805 (1878)
T 2uv9_A 726 VNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNH 805 (1878)
T ss_dssp HHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCS
T ss_pred HHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchh
Confidence 763 2 489999999975432 1 1 23457899999999998887732 211 113899999965
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH-h--CCcEEEEeecccc-CCCCCCCChHHHHHHHHHcCCC
Q 013602 229 VYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI-Y--GLSLTGLRFFTVY-GPWGRPDMAYFFFTRDILNRKS 304 (439)
Q Consensus 229 v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~-~--gi~~~ilrpg~v~-G~~~~~~~~~~~~~~~~~~g~~ 304 (439)
.+. .....|+.+|++.+.+++.+..+ + ++++++|.||.|. ++... . .......+...
T Consensus 806 g~~--------------gg~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~-~---~~~~~~~~~~~- 866 (1878)
T 2uv9_A 806 GTF--------------GNDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMS-A---NNLVAEGVEKL- 866 (1878)
T ss_dssp SSS--------------SCCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCS-H---HHHTHHHHHTT-
T ss_pred hcc--------------CCchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCcccc-c---chhhHHHHHhc-
Confidence 421 12468999999999998766543 2 3999999999997 43221 0 01111112211
Q ss_pred CceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 305 IPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 305 ~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
++ -+...+|+|.+++.++....
T Consensus 867 -pl-----------r~~sPeEVA~avlfLaSd~a 888 (1878)
T 2uv9_A 867 -GV-----------RTFSQQEMAFNLLGLMAPAI 888 (1878)
T ss_dssp -TC-----------CCBCHHHHHHHHHHHHSHHH
T ss_pred -CC-----------CCCCHHHHHHHHHHHhCCcc
Confidence 11 13478999999998886543
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-16 Score=153.13 Aligned_cols=178 Identities=12% Similarity=-0.068 Sum_probs=125.7
Q ss_pred CCCCEEEEECCCChHHHH--HHHHHHhCCCeEEEEECCCCCCChh--------HHHHHHH-hhhcCCeEEEEcccCCHHH
Q 013602 97 RNGISVLVTGAAGFVGTH--VSAALKRRGDGVLGLDNFNDYYDPS--------LKKARQA-LLERSGIFIVEGDINDMAL 165 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~--l~~~L~~~G~~V~~~~r~~~~~~~~--------~~~~~~~-~~~~~~v~~~~~Dl~d~~~ 165 (439)
..+|+||||||+++||.+ +++.|+++|++|++++|+....... ....... ......+.++.+|++|.++
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~ 137 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET 137 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence 578999999999999999 9999999999999999976543311 1111111 1123468899999999999
Q ss_pred HHHhhccc-----CccEEEEccccc-------------Cc-------------------------cccccChhHHHHHHH
Q 013602 166 LKKLFDVV-----SFTHVMHLAAQA-------------GV-------------------------RYAMQNPNSYVHSNI 202 (439)
Q Consensus 166 ~~~~~~~~-----~~d~Vi~~Ag~~-------------~~-------------------------~~~~~~~~~~~~~Nv 202 (439)
++++++.+ ++|+||||||.. .. ..+.++.+..+++|.
T Consensus 138 v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~ 217 (418)
T 4eue_A 138 KDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMG 217 (418)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhh
Confidence 88888754 689999999973 00 012233446677776
Q ss_pred HHHH-HHHHHHHhcCC---CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH----hCCcEE
Q 013602 203 AGLV-SLLEVCKNANP---QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI----YGLSLT 274 (439)
Q Consensus 203 ~gt~-~ll~~~~~~~~---~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~----~gi~~~ 274 (439)
.+.. .+++++..... ..++|++||.+..-. .+......|+++|.+.+.+++.++.+ .|++++
T Consensus 218 ~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~----------~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN 287 (418)
T 4eue_A 218 GEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRT----------YKIYREGTIGIAKKDLEDKAKLINEKLNRVIGGRAF 287 (418)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGG----------TTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCC----------CCccccHHHHHHHHHHHHHHHHHHHHhCCccCeEEE
Confidence 6554 55555543221 128999999653210 01112279999999999999998876 489999
Q ss_pred EEeeccccCC
Q 013602 275 GLRFFTVYGP 284 (439)
Q Consensus 275 ilrpg~v~G~ 284 (439)
+|.||.|-.+
T Consensus 288 ~V~PG~v~T~ 297 (418)
T 4eue_A 288 VSVNKALVTK 297 (418)
T ss_dssp EEECCCCCCH
T ss_pred EEECCcCcCh
Confidence 9999998765
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=170.86 Aligned_cols=170 Identities=22% Similarity=0.228 Sum_probs=130.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHH-hCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 98 NGISVLVTGAAGFVGTHVSAALK-RRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~-~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.++++|||||+|+||.++++.|+ ++|+ +|++++|+....+...............+.++.+|++|.++++++++.+
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~ 608 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPD 608 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 57899999999999999999999 7998 5899999643322222211111112346889999999999999998765
Q ss_pred --CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc-cCCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV-YGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v-~g~~~~~~~~e~~~~~~ 246 (439)
++|+||||||+... ..+.++++..+++|+.|+.++.+++... - +||++||.+. .|. .
T Consensus 609 ~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~--l-~iV~~SS~ag~~g~-------------~ 672 (795)
T 3slk_A 609 EHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD--V-ALVLFSSVSGVLGS-------------G 672 (795)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT--S-EEEEEEETHHHHTC-------------S
T ss_pred hCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC--C-EEEEEccHHhcCCC-------------C
Confidence 68999999998543 2344566789999999999999998433 2 8999999654 331 3
Q ss_pred CCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCC
Q 013602 247 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGP 284 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~ 284 (439)
....|+++|...+.+.++++. .|+++++|.||.+-++
T Consensus 673 g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~ 709 (795)
T 3slk_A 673 GQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEH 709 (795)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcc
Confidence 467899999988888887765 4999999999988754
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-16 Score=171.62 Aligned_cols=212 Identities=15% Similarity=0.122 Sum_probs=141.7
Q ss_pred cCCCCEEEEECCCCh-HHHHHHHHHHhCCCeEEEEE-CCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcc
Q 013602 96 ARNGISVLVTGAAGF-VGTHVSAALKRRGDGVLGLD-NFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 96 ~~~~~~VlItGatG~-IG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
.+.+|+||||||+|+ ||.++++.|+++|++|++++ |+.+...........+.. ....+.++.+|++|.++++++++.
T Consensus 473 sL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~ 552 (1688)
T 2pff_A 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 552 (1688)
T ss_dssp CCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHH
T ss_pred ccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 367899999999998 99999999999999999984 544332222111111100 123588999999999998888753
Q ss_pred ---------c--CccEEEEcccccCcc-c----c--ccChhHHHHHHHHHHHHHHHHHHh--cC---CCCeEEEecCCcc
Q 013602 173 ---------V--SFTHVMHLAAQAGVR-Y----A--MQNPNSYVHSNIAGLVSLLEVCKN--AN---PQPAIVWASSSSV 229 (439)
Q Consensus 173 ---------~--~~d~Vi~~Ag~~~~~-~----~--~~~~~~~~~~Nv~gt~~ll~~~~~--~~---~~~~~V~~SS~~v 229 (439)
. ++|+||||||+.... . + .++.+..+++|+.|+.+++++++. .- ...+||++||...
T Consensus 553 I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG 632 (1688)
T 2pff_A 553 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 632 (1688)
T ss_dssp HHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHh
Confidence 2 479999999975432 1 1 234568999999999999998732 21 1138999999654
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHhHhC--CcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCc
Q 013602 230 YGLNTKVPFSEKDRTDQPASLYAATKKAGEEI-AHTYNHIYG--LSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIP 306 (439)
Q Consensus 230 ~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~-~~~~~~~~g--i~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~ 306 (439)
.. .....|+.||++.+.+ .+.++.+++ +++++|.||.|.|....... ... .....
T Consensus 633 ~~--------------Gg~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~-------e~~-~~~l~ 690 (1688)
T 2pff_A 633 TF--------------GGDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-------NII-AEGIE 690 (1688)
T ss_dssp TS--------------SCBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTT-------TTC-STTTS
T ss_pred cc--------------CCchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCc-------hHH-HHHHH
Confidence 21 1346899999999998 555555433 89999999999853211000 000 00000
Q ss_pred eeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 307 IFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 307 ~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
. ....+...+|+|.+++.++...
T Consensus 691 ~--------iplR~~sPEEVA~aIlFLaSd~ 713 (1688)
T 2pff_A 691 K--------MGVRTFSQKEMAFNLLGLLTPE 713 (1688)
T ss_dssp S--------SSCCCCCCCTTHHHHHHHTSTT
T ss_pred h--------CCCCCCCHHHHHHHHHHHhCCC
Confidence 0 0012346799999999988655
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=162.69 Aligned_cols=172 Identities=17% Similarity=0.125 Sum_probs=123.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
.+|++|||||+|+||.++++.|+++|++ |++++|+....................+.++.+|++|.++++++++.+
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 5789999999999999999999999997 777888654332211111111112346788999999999999888764
Q ss_pred -CccEEEEcccccCc----cccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcc-cCCCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGV----RYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSV-YGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v-~g~~~~~~~~e~~~~~~ 246 (439)
++|+||||||+... ..+.++++..+++|+.|+.++.+++.... ...+||++||... .|. .
T Consensus 1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~-------------~ 2029 (2512)
T 2vz8_A 1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGN-------------A 2029 (2512)
T ss_dssp SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTC-------------T
T ss_pred CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCC-------------C
Confidence 68999999997432 23456677889999999999988876542 1249999999553 221 3
Q ss_pred CCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccC
Q 013602 247 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYG 283 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G 283 (439)
....|+++|.+.+.+++..+.+ |++...+..|.+-+
T Consensus 2030 g~~~Y~aaKaal~~l~~~rr~~-Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A 2030 GQANYGFANSAMERICEKRRHD-GLPGLAVQWGAIGD 2065 (2512)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHT-TSCCCEEEECCBCT
T ss_pred CcHHHHHHHHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence 4578999999999999987665 99999999887643
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=153.74 Aligned_cols=241 Identities=14% Similarity=0.096 Sum_probs=149.4
Q ss_pred ccCCCCEEEEECCCCh-HHHHHHHHHHhCCCeEEEEECCCCCCChh-HHHHHHHhhh-cCCeEEEEcccCCHHHHHHhhc
Q 013602 95 RARNGISVLVTGAAGF-VGTHVSAALKRRGDGVLGLDNFNDYYDPS-LKKARQALLE-RSGIFIVEGDINDMALLKKLFD 171 (439)
Q Consensus 95 ~~~~~~~VlItGatG~-IG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~~ 171 (439)
..+++|++|||||+++ ||.++++.|+++|++|++.+|+.+..... ......+... ...+..+.+|++|.++++++++
T Consensus 2132 ~~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~ 2211 (3089)
T 3zen_D 2132 XXXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVE 2211 (3089)
T ss_dssp CCCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHH
Confidence 3478999999999999 99999999999999999999855420000 1111111111 2357789999999999888764
Q ss_pred cc---------CccEEEEccccc----Cc-----cccccChhH----HHHHHHHHHHHHHHHHHh----cCCCC--eEE-
Q 013602 172 VV---------SFTHVMHLAAQA----GV-----RYAMQNPNS----YVHSNIAGLVSLLEVCKN----ANPQP--AIV- 222 (439)
Q Consensus 172 ~~---------~~d~Vi~~Ag~~----~~-----~~~~~~~~~----~~~~Nv~gt~~ll~~~~~----~~~~~--~~V- 222 (439)
.+ ++|++|||||+. .. ....++... .+++|+.++..+++++.. .+... .+|
T Consensus 2212 ~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~ 2291 (3089)
T 3zen_D 2212 WVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVL 2291 (3089)
T ss_dssp HHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEE
Confidence 32 579999999971 11 112233433 489999998888777643 22111 222
Q ss_pred EecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH--h--CCcEEEEeeccccCCCCCC-CChHHHHHH
Q 013602 223 WASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI--Y--GLSLTGLRFFTVYGPWGRP-DMAYFFFTR 297 (439)
Q Consensus 223 ~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~--~--gi~~~ilrpg~v~G~~~~~-~~~~~~~~~ 297 (439)
..|+.. +. ......|+.||.+.+.+++.++.+ + +++++.+.||.|-+..... .... .
T Consensus 2292 ~~ss~~--g~------------~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~~~----~ 2353 (3089)
T 3zen_D 2292 PGSPNR--GM------------FGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQNDAI----V 2353 (3089)
T ss_dssp EECSST--TS------------CSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTTTT----H
T ss_pred ECCccc--cc------------CCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccchhH----H
Confidence 222211 10 012357999999999999999998 4 5899999999997543210 1000 1
Q ss_pred HHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcE--EEecCCC---cccHHHHHHH
Q 013602 298 DILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRV--FNLGNTS---PVPVSDLVSI 372 (439)
Q Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~~---~~t~~el~~~ 372 (439)
...... .. .....+|+|.+++.++....... +.++. ..++++- ...+.++.+.
T Consensus 2354 ~~~~~~--~~-----------r~~~PeEIA~avlfLaS~~a~~~---------~~~~p~~vdl~GG~~~~~~~~~~~~~~ 2411 (3089)
T 3zen_D 2354 SAVEEA--GV-----------TTYTTDEMAAMLLDLCTVETKVA---------AAGAPVKVDLTGGLGDIKIDMAELAAK 2411 (3089)
T ss_dssp HHHGGG--SC-----------BCEEHHHHHHHHHHTTSHHHHHH---------HHHSCEEEECSBSCSSCCCCHHHHTHH
T ss_pred HHHHhc--CC-----------CCCCHHHHHHHHHHHhChhhhhH---------hcCCeEEEEcCCCcCcCCCCHHHHHHH
Confidence 111111 00 12268999999999876443211 01122 3333433 3578888876
Q ss_pred HHH
Q 013602 373 LER 375 (439)
Q Consensus 373 l~~ 375 (439)
+.+
T Consensus 2412 ~~~ 2414 (3089)
T 3zen_D 2412 ARE 2414 (3089)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-10 Score=91.57 Aligned_cols=96 Identities=25% Similarity=0.172 Sum_probs=75.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
.+++|+|+|+ |++|+.+++.|.++| ++|++++|+. ...+.....++.++.+|+.+.+.+.++++++ |
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~---------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--d 71 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDL---------AALAVLNRMGVATKQVDAKDEAGLAKALGGF--D 71 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCH---------HHHHHHHTTTCEEEECCTTCHHHHHHHTTTC--S
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCH---------HHHHHHHhCCCcEEEecCCCHHHHHHHHcCC--C
Confidence 4578999999 999999999999999 9999999922 1222222567889999999999999999876 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+|||+++.. .+..+++++.+.+. +++.+|
T Consensus 72 ~vi~~~~~~------------------~~~~~~~~~~~~g~--~~~~~~ 100 (118)
T 3ic5_A 72 AVISAAPFF------------------LTPIIAKAAKAAGA--HYFDLT 100 (118)
T ss_dssp EEEECSCGG------------------GHHHHHHHHHHTTC--EEECCC
T ss_pred EEEECCCch------------------hhHHHHHHHHHhCC--CEEEec
Confidence 999999631 13578888888885 444444
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.5e-10 Score=107.93 Aligned_cols=178 Identities=12% Similarity=-0.002 Sum_probs=113.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHH-hCCCeEEEEECCCCCCChhH-------HHHHHH--hhhcCCeEEEEcccCCHHHH
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALK-RRGDGVLGLDNFNDYYDPSL-------KKARQA--LLERSGIFIVEGDINDMALL 166 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~-------~~~~~~--~~~~~~v~~~~~Dl~d~~~~ 166 (439)
..+|+||||||+++||.+++..|+ +.|..|+++++..+...... .....+ .........+.+|++|.+++
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i 127 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK 127 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence 457999999999999999999998 67999999998765443211 111111 12235678999999999999
Q ss_pred HHhhccc-----CccEEEEcccccCccccc---------------------c--------------ChhHH-HHHHHHHH
Q 013602 167 KKLFDVV-----SFTHVMHLAAQAGVRYAM---------------------Q--------------NPNSY-VHSNIAGL 205 (439)
Q Consensus 167 ~~~~~~~-----~~d~Vi~~Ag~~~~~~~~---------------------~--------------~~~~~-~~~Nv~gt 205 (439)
+++++.+ ++|+|||++|...-...+ + ..++. .-+.+.|.
T Consensus 128 ~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg~ 207 (401)
T 4ggo_A 128 AQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMGG 207 (401)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHhh
Confidence 9888765 689999999964210000 0 00111 11112221
Q ss_pred ---HHHHHHHHhcCC---CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh-CCcEEEEee
Q 013602 206 ---VSLLEVCKNANP---QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTGLRF 278 (439)
Q Consensus 206 ---~~ll~~~~~~~~---~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~-gi~~~ilrp 278 (439)
.....+....+. ..++|..|+.+.- ...+......++.+|.+.|..++.++.++ ++++.++-+
T Consensus 208 s~~s~w~~al~~a~lla~G~siva~SYiGse----------~t~P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a~v~v~ 277 (401)
T 4ggo_A 208 EDWERWIKQLSKEGLLEEGCITLAYSYIGPE----------ATQALYRKGTIGKAKEHLEATAHRLNKENPSIRAFVSVN 277 (401)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEECCCCG----------GGHHHHTTSHHHHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred hHHHHHHHHHHhhhcccCCceEEEEeccCcc----------eeecCCCccHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence 122333333221 1288888875520 01111123578999999999999999986 567777777
Q ss_pred ccccCC
Q 013602 279 FTVYGP 284 (439)
Q Consensus 279 g~v~G~ 284 (439)
+.+-..
T Consensus 278 ~a~vT~ 283 (401)
T 4ggo_A 278 KGLVTR 283 (401)
T ss_dssp CCCCCT
T ss_pred Cccccc
Confidence 766543
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-10 Score=110.04 Aligned_cols=177 Identities=10% Similarity=0.035 Sum_probs=116.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhh
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD-------GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
+.++|+||||+|+||++++..|+.+|. +|++++++.+.. ..........+......+ ..|+.......+++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~-~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al 81 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKA-QKALQGVMMEIDDCAFPL-LAGMTAHADPMTAF 81 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHH-HHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccc-cccchhhHHHHhhhcccc-cCcEEEecCcHHHh
Confidence 346899999999999999999999885 799988730000 000111111111111111 24665556678889
Q ss_pred cccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc-c--cCCCCCCCCCCCCCCCC
Q 013602 171 DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSS-V--YGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~-v--~g~~~~~~~~e~~~~~~ 246 (439)
+++ |+|||+||... ....+..+.+..|+.++.++++.+.+.+ +..+||++|.-. + |-. .+..+..+
T Consensus 82 ~~a--D~Vi~~ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~------~~~~~~~p 151 (329)
T 1b8p_A 82 KDA--DVALLVGARPR--GPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA------MKSAPSLP 151 (329)
T ss_dssp TTC--SEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH------HHTCTTSC
T ss_pred CCC--CEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH------HHHcCCCC
Confidence 988 99999999632 2234556789999999999999999985 666899998611 0 000 00000001
Q ss_pred CCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCC
Q 013602 247 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWG 286 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~ 286 (439)
+...|+.+++...++...+++..|+....++...|+|.++
T Consensus 152 ~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg 191 (329)
T 1b8p_A 152 AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHS 191 (329)
T ss_dssp GGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSS
T ss_pred HHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEeccC
Confidence 2335777888888888888888898877788777888654
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.3e-09 Score=98.99 Aligned_cols=81 Identities=20% Similarity=0.158 Sum_probs=64.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+.+|+|+||||+|+||++++..|+++|++|++++|+.++ .+...+.. ...++.++.+|++|.+++.++++++
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~-----~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-- 189 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK-----AQAAADSVNKRFKVNVTAAETADDASRAEAVKGA-- 189 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHH-----HHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTC--
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHH-----HHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhC--
Confidence 578999999999999999999999999999999994321 11111111 1135778889999999999999887
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||||||.
T Consensus 190 DvlVn~ag~ 198 (287)
T 1lu9_A 190 HFVFTAGAI 198 (287)
T ss_dssp SEEEECCCT
T ss_pred CEEEECCCc
Confidence 999999985
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.4e-08 Score=96.06 Aligned_cols=116 Identities=20% Similarity=0.176 Sum_probs=81.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhc-CCeEEEEcccCCHHHHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLER-SGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
..|+|+||||+|++|..++..|+.+| ++|++++++.+ .....+.... .... +.. +.+..++.++++++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~------~~~~~dL~~~~~~~~-v~~-~~~t~d~~~al~ga- 77 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA------PGVTADISHMDTGAV-VRG-FLGQQQLEAALTGM- 77 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH------HHHHHHHHTSCSSCE-EEE-EESHHHHHHHHTTC-
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc------HhHHHHhhcccccce-EEE-EeCCCCHHHHcCCC-
Confidence 34789999999999999999999999 89999987432 1111111111 1111 122 33456788889988
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
|+|||+||.... ......++...|+.++.++++.+.+.++. .+|+++|
T Consensus 78 -DvVi~~ag~~~~--~g~~r~dl~~~N~~~~~~i~~~i~~~~p~-~~viv~S 125 (326)
T 1smk_A 78 -DLIIVPAGVPRK--PGMTRDDLFKINAGIVKTLCEGIAKCCPR-AIVNLIS 125 (326)
T ss_dssp -SEEEECCCCCCC--SSCCCSHHHHHHHHHHHHHHHHHHHHCTT-SEEEECC
T ss_pred -CEEEEcCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEEC
Confidence 999999996321 22334578999999999999999999876 5666665
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=9.8e-08 Score=79.84 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=72.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~ 175 (439)
..+++|+|+|+ |.+|..+++.|.+.|++|++++++. ...+.....+..++.+|.+|.+.+.++ ++++
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~---------~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~-- 71 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINE---------EKVNAYASYATHAVIANATEENELLSLGIRNF-- 71 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCH---------HHHHTTTTTCSEEEECCTTCHHHHHTTTGGGC--
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCH---------HHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCC--
Confidence 45678999998 9999999999999999999999821 122222334567788999998888776 5655
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
|+||++++.. .+.| ..+.+.+++.+.. ++|..++
T Consensus 72 d~vi~~~~~~------------~~~~----~~~~~~~~~~~~~-~ii~~~~ 105 (144)
T 2hmt_A 72 EYVIVAIGAN------------IQAS----TLTTLLLKELDIP-NIWVKAQ 105 (144)
T ss_dssp SEEEECCCSC------------HHHH----HHHHHHHHHTTCS-EEEEECC
T ss_pred CEEEECCCCc------------hHHH----HHHHHHHHHcCCC-eEEEEeC
Confidence 9999988631 0122 2356677777764 7776664
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.8e-08 Score=93.48 Aligned_cols=173 Identities=12% Similarity=0.124 Sum_probs=101.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC--eEEEEEC--CCCCCChhHHHHHHHhhhcCCeEEEEcccCCH-HHHHHhhcccC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDN--FNDYYDPSLKKARQALLERSGIFIVEGDINDM-ALLKKLFDVVS 174 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r--~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~~~~~~~~~~ 174 (439)
|+|+||||+|+||++++..|+.+|. ++.++++ +.++ ......+........-...++.+. +++.++++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~----~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~ga- 75 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINK----LEGLREDIYDALAGTRSDANIYVESDENLRIIDES- 75 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHH----HHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTC-
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhh----hHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCC-
Confidence 5899999999999999999999885 5777776 2110 110000111000000011233222 2356678888
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH-
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAA- 253 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~- 253 (439)
|+|||+||... .......+.+..|+.++.++++++++.+ . ++|+++|--+.-. ........ ..++...++.
T Consensus 76 -D~Vi~~Ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~-~~vlv~SNPv~~~-t~~~~k~~--~~p~~rviG~g 147 (313)
T 1hye_A 76 -DVVIITSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEIC-D-TKIFVITNPVDVM-TYKALVDS--KFERNQVFGLG 147 (313)
T ss_dssp -SEEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHC-C-CEEEECSSSHHHH-HHHHHHHH--CCCTTSEEECT
T ss_pred -CEEEECCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhC-C-eEEEEecCcHHHH-HHHHHHhh--CcChhcEEEeC
Confidence 99999999632 2223456789999999999999999998 6 5555555221000 00000000 0123455665
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCC
Q 013602 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWG 286 (439)
Q Consensus 254 sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~ 286 (439)
+.+...++...+++..|++..-|+. .|+|..+
T Consensus 148 t~LD~~r~~~~la~~lgv~~~~v~~-~v~G~Hg 179 (313)
T 1hye_A 148 THLDSLRFKVAIAKFFGVHIDEVRT-RIIGEHG 179 (313)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEEC-CEEECSS
T ss_pred ccHHHHHHHHHHHHHhCcCHHHeEE-EEeeccC
Confidence 6666677777777777876555654 5666543
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=93.29 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=74.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCC---CeEEEEECCCCCCChhHHHHHHHhhhc---CCeEEEEcccCCHHHHHHhhcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRG---DGVLGLDNFNDYYDPSLKKARQALLER---SGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+++|+|+|| |+||+.+++.|+++| .+|++++|+.+ ......+.... .++..+.+|++|.+++++++++
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~-----~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~ 74 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLS-----KCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE 74 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHH-----HHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHH-----HHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence 368999998 999999999999998 38999999432 11111111221 3689999999999999999998
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
.++|+|||||+... ...++++|.+.+. ++|-++
T Consensus 75 ~~~DvVin~ag~~~------------------~~~v~~a~l~~g~--~vvD~a 107 (405)
T 4ina_A 75 VKPQIVLNIALPYQ------------------DLTIMEACLRTGV--PYLDTA 107 (405)
T ss_dssp HCCSEEEECSCGGG------------------HHHHHHHHHHHTC--CEEESS
T ss_pred hCCCEEEECCCccc------------------ChHHHHHHHHhCC--CEEEec
Confidence 66799999997521 1357778888875 555444
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.6e-07 Score=77.31 Aligned_cols=74 Identities=23% Similarity=0.331 Sum_probs=57.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCcc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFT 176 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d 176 (439)
.+++|+|+|+ |.+|..+++.|.++|++|++++++. ...+.....++.++.+|.+|++.++++ +++ .|
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~---------~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~--~d 72 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSK---------EKIELLEDEGFDAVIADPTDESFYRSLDLEG--VS 72 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCH---------HHHHHHHHTTCEEEECCTTCHHHHHHSCCTT--CS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCH---------HHHHHHHHCCCcEEECCCCCHHHHHhCCccc--CC
Confidence 4578999997 9999999999999999999999822 122222335788999999999998876 233 49
Q ss_pred EEEEccc
Q 013602 177 HVMHLAA 183 (439)
Q Consensus 177 ~Vi~~Ag 183 (439)
+||.+.+
T Consensus 73 ~vi~~~~ 79 (141)
T 3llv_A 73 AVLITGS 79 (141)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9998764
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=89.29 Aligned_cols=167 Identities=15% Similarity=0.063 Sum_probs=95.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC--eEEEEEC--CCCCCChhHHHHHHHhhh----cCCeEEEEcccCCHHHHHHhhc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDN--FNDYYDPSLKKARQALLE----RSGIFIVEGDINDMALLKKLFD 171 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r--~~~~~~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~~~~~~~ 171 (439)
|+|+||||+|++|..++..|+.+|. ++.++++ +.++ ......+... ...+.+.. | + .++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~----~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~ 69 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDD----TVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTA 69 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHH----HHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhh----HHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhC
Confidence 5899999999999999999998885 6777776 2211 1000111111 12333332 2 2 45577
Q ss_pred ccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChH
Q 013602 172 VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLY 251 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y 251 (439)
++ |+|||+||... .......+.+..|+.++.++++++++.++. .+|+++|--+-- ... ...... ..++....
T Consensus 70 ~a--DvVi~~ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~-~~viv~SNPv~~-~~~-~~~~~~-~~p~~rvi 141 (303)
T 1o6z_A 70 GS--DVVVITAGIPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDD-YISLTTSNPVDL-LNR-HLYEAG-DRSREQVI 141 (303)
T ss_dssp TC--SEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSC-CEEEECCSSHHH-HHH-HHHHHS-SSCGGGEE
T ss_pred CC--CEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-cEEEEeCChHHH-HHH-HHHHHc-CCCHHHee
Confidence 77 99999999632 222344578999999999999999999876 555556522100 000 000000 00112223
Q ss_pred HH-HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCC
Q 013602 252 AA-TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWG 286 (439)
Q Consensus 252 ~~-sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~ 286 (439)
+. +-+-.-++...+++..|+...-|+ +.|+|..+
T Consensus 142 G~gt~Ld~~r~~~~la~~l~v~~~~v~-~~v~G~HG 176 (303)
T 1o6z_A 142 GFGGRLDSARFRYVLSEEFDAPVQNVE-GTILGEHG 176 (303)
T ss_dssp ECCHHHHHHHHHHHHHHHHTCCGGGEE-CCEEECSS
T ss_pred ecccchhHHHHHHHHHHHhCcCHHHeE-EEEEeCCC
Confidence 33 333334444555555677656666 67788643
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.7e-07 Score=90.90 Aligned_cols=106 Identities=21% Similarity=0.103 Sum_probs=74.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh--cCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE--RSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
|.+|+|+|+| +|++|+++++.|++.|++|++++|+. . ..+... ..++..+.+|++|.+++.++++++
T Consensus 1 M~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~-------~--~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~- 69 (450)
T 1ff9_A 1 MATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTL-------E--SAKKLSAGVQHSTPISLDVNDDAALDAEVAKH- 69 (450)
T ss_dssp -CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSH-------H--HHHHTTTTCTTEEEEECCTTCHHHHHHHHTTS-
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCH-------H--HHHHHHHhcCCceEEEeecCCHHHHHHHHcCC-
Confidence 3568999998 79999999999999999999999922 1 111111 124778999999999999999866
Q ss_pred ccEEEEcccccCccccccChhHHHHH--H-------HHHHHHHHHHHHhcCC
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHS--N-------IAGLVSLLEVCKNANP 217 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~--N-------v~gt~~ll~~~~~~~~ 217 (439)
|+|||+++...... -....++. | ...+.+++++++++|.
T Consensus 70 -DvVIn~a~~~~~~~---i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv 117 (450)
T 1ff9_A 70 -DLVISLIPYTFHAT---VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI 117 (450)
T ss_dssp -SEEEECCC--CHHH---HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTC
T ss_pred -cEEEECCccccchH---HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCC
Confidence 99999998632110 01111111 1 1256789999999885
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=9.4e-08 Score=86.22 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=57.8
Q ss_pred CCCCEEEEECC----------------CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEccc
Q 013602 97 RNGISVLVTGA----------------AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160 (439)
Q Consensus 97 ~~~~~VlItGa----------------tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl 160 (439)
+.||+|||||| +|++|.++++.|+++|++|+++++.... . ...++. .+|+
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l-~-----------~~~g~~--~~dv 71 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL-P-----------TPPFVK--RVDV 71 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC-C-----------CCTTEE--EEEC
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCccc-c-----------cCCCCe--EEcc
Confidence 68899999999 7999999999999999999999884421 0 012333 4688
Q ss_pred CCHHHHHHhhcc-c-CccEEEEcccccCc
Q 013602 161 NDMALLKKLFDV-V-SFTHVMHLAAQAGV 187 (439)
Q Consensus 161 ~d~~~~~~~~~~-~-~~d~Vi~~Ag~~~~ 187 (439)
++.+++.+.+.. . +.|++|||||+...
T Consensus 72 ~~~~~~~~~v~~~~~~~Dili~~Aav~d~ 100 (226)
T 1u7z_A 72 MTALEMEAAVNASVQQQNIFIGCAAVADY 100 (226)
T ss_dssp CSHHHHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred CcHHHHHHHHHHhcCCCCEEEECCcccCC
Confidence 887765554432 2 46999999998654
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.2e-07 Score=81.54 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=55.1
Q ss_pred CCCEEEEECC----------------CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC
Q 013602 98 NGISVLVTGA----------------AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161 (439)
Q Consensus 98 ~~~~VlItGa----------------tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~ 161 (439)
.||+|||||| +|++|.++++.|+++|++|++++|....... ...++..+ |+.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~----------~~~~~~~~--~v~ 69 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE----------PHPNLSIR--EIT 69 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC----------CCTTEEEE--ECC
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc----------CCCCeEEE--EHh
Confidence 5799999999 9999999999999999999999994431110 01245444 555
Q ss_pred CHHHHHHhhcc-c-CccEEEEcccccCcc
Q 013602 162 DMALLKKLFDV-V-SFTHVMHLAAQAGVR 188 (439)
Q Consensus 162 d~~~~~~~~~~-~-~~d~Vi~~Ag~~~~~ 188 (439)
+.+++.+.+.. + +.|++||+||+..+.
T Consensus 70 s~~em~~~v~~~~~~~Dili~aAAvsD~~ 98 (232)
T 2gk4_A 70 NTKDLLIEMQERVQDYQVLIHSMAVSDYT 98 (232)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECSBCCSEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCcccccc
Confidence 65544433322 1 359999999986543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-06 Score=70.94 Aligned_cols=99 Identities=13% Similarity=0.251 Sum_probs=67.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCcc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFT 176 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d 176 (439)
.+|+|+|+|+ |.+|..+++.|.+.|++|++++|+. ... .......++.++.+|.++.+.+.++ ++++ |
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~-------~~~-~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~--d 71 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDK-------DIC-KKASAEIDALVINGDCTKIKTLEDAGIEDA--D 71 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH-------HHH-HHHHHHCSSEEEESCTTSHHHHHHTTTTTC--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCH-------HHH-HHHHHhcCcEEEEcCCCCHHHHHHcCcccC--C
Confidence 3578999996 9999999999999999999999822 111 1111123677888999998887765 4555 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+||++.+. . ..| ..+.+.++..+.. ++|..+
T Consensus 72 ~vi~~~~~---------~----~~~----~~~~~~~~~~~~~-~ii~~~ 102 (140)
T 1lss_A 72 MYIAVTGK---------E----EVN----LMSSLLAKSYGIN-KTIARI 102 (140)
T ss_dssp EEEECCSC---------H----HHH----HHHHHHHHHTTCC-CEEEEC
T ss_pred EEEEeeCC---------c----hHH----HHHHHHHHHcCCC-EEEEEe
Confidence 99998642 0 122 2455667776654 666544
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=4.7e-07 Score=80.38 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=65.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh---hccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL---FDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~---~~~~ 173 (439)
..+++|+|+||+|+||..+++.+...|++|++++|+. . ..+.....+... ..|..+.+..+.+ ....
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~-------~--~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~ 106 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD-------A--KREMLSRLGVEY-VGDSRSVDFADEILELTDGY 106 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH-------H--HHHHHHTTCCSE-EEETTCSTHHHHHHHHTTTC
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH-------H--HHHHHHHcCCCE-EeeCCcHHHHHHHHHHhCCC
Confidence 3578999999999999999999999999999999822 1 111111223222 2477665444433 3333
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
.+|+||||+|.. .....++.++..| ++|.+++..
T Consensus 107 ~~D~vi~~~g~~------------------~~~~~~~~l~~~G---~~v~~g~~~ 140 (198)
T 1pqw_A 107 GVDVVLNSLAGE------------------AIQRGVQILAPGG---RFIELGKKD 140 (198)
T ss_dssp CEEEEEECCCTH------------------HHHHHHHTEEEEE---EEEECSCGG
T ss_pred CCeEEEECCchH------------------HHHHHHHHhccCC---EEEEEcCCC
Confidence 579999999731 1234445555444 999988754
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.3e-06 Score=82.50 Aligned_cols=93 Identities=17% Similarity=0.086 Sum_probs=71.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
.|+|+|.|| |++|+.+++.|.+ .++|.+++++. . ..+. ....+..+.+|+.|.+++.++++++ |+|
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~-------~--~~~~-~~~~~~~~~~d~~d~~~l~~~~~~~--DvV 81 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNN-------E--NLEK-VKEFATPLKVDASNFDKLVEVMKEF--ELV 81 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCH-------H--HHHH-HTTTSEEEECCTTCHHHHHHHHTTC--SEE
T ss_pred ccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCH-------H--HHHH-HhccCCcEEEecCCHHHHHHHHhCC--CEE
Confidence 468999998 9999999998854 68999999822 1 1111 2346778899999999999999988 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
||+++... ...++++|.+++. ++|=+|
T Consensus 82 i~~~p~~~------------------~~~v~~~~~~~g~--~yvD~s 108 (365)
T 3abi_A 82 IGALPGFL------------------GFKSIKAAIKSKV--DMVDVS 108 (365)
T ss_dssp EECCCGGG------------------HHHHHHHHHHHTC--EEEECC
T ss_pred EEecCCcc------------------cchHHHHHHhcCc--ceEeee
Confidence 99986421 1357888888885 777655
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=68.33 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=58.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCcc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFT 176 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d 176 (439)
..++|+|+|+ |.+|+.+++.|.+.|++|++++++. .............++.++.+|.+|++.+.++ ++++ |
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~-----~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a--d 73 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLP-----EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRC--R 73 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCC-----HHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTC--S
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCC-----hHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhC--C
Confidence 3468999996 9999999999999999999999831 1111111111235789999999999999887 7766 9
Q ss_pred EEEEccc
Q 013602 177 HVMHLAA 183 (439)
Q Consensus 177 ~Vi~~Ag 183 (439)
.||-+.+
T Consensus 74 ~vi~~~~ 80 (153)
T 1id1_A 74 AILALSD 80 (153)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9987764
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.5e-06 Score=80.47 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=79.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC---HHHHHHhhcccC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND---MALLKKLFDVVS 174 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~~~~~~~~~~ 174 (439)
|+|.|+||+|++|..++..|+.+| .+|.+++++. ......+. ..... .+++.. ..+.+++++++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~------~~~~a~dL-~~~~~---~~~l~~~~~t~d~~~a~~~a- 69 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH------TPGVAADL-SHIET---RATVKGYLGPEQLPDCLKGC- 69 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS------HHHHHHHH-TTSSS---SCEEEEEESGGGHHHHHTTC-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc------cHHHHHHH-hccCc---CceEEEecCCCCHHHHhCCC-
Confidence 589999999999999999999988 7999999843 11111111 11110 112221 23467778888
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
|+||++||... .......+.+..|+..+..+++.+.+..+..+||++|-
T Consensus 70 -DvVvi~ag~~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 70 -DVVVIPAGVPR--KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp -SEEEECCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred -CEEEECCCcCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 99999998743 22233456789999999999999999887668888763
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.5e-06 Score=83.96 Aligned_cols=78 Identities=27% Similarity=0.262 Sum_probs=60.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+.+++|+|+|+ |++|+.++..|++. |++|++++|+. .+.. ......++..+.+|+.|.+++.++++++
T Consensus 21 l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~-------~ka~-~la~~~~~~~~~~D~~d~~~l~~~l~~~-- 89 (467)
T 2axq_A 21 HMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTL-------ANAQ-ALAKPSGSKAISLDVTDDSALDKVLADN-- 89 (467)
T ss_dssp --CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSH-------HHHH-HHHGGGTCEEEECCTTCHHHHHHHHHTS--
T ss_pred CCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCH-------HHHH-HHHHhcCCcEEEEecCCHHHHHHHHcCC--
Confidence 56789999997 99999999999998 78999999932 1111 1111136778889999999999998876
Q ss_pred cEEEEccccc
Q 013602 176 THVMHLAAQA 185 (439)
Q Consensus 176 d~Vi~~Ag~~ 185 (439)
|+|||+++..
T Consensus 90 DvVIn~tp~~ 99 (467)
T 2axq_A 90 DVVISLIPYT 99 (467)
T ss_dssp SEEEECSCGG
T ss_pred CEEEECCchh
Confidence 9999999863
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=7.7e-06 Score=69.53 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=58.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHh-hcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDMALLKKL-FDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~-~~~~~ 174 (439)
..+++|+|+|+ |.+|..+++.|.+.|++|++++|+.+. .+... ..++.++.+|..+.+.+.++ ++++
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~---------~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~a- 85 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYA---------FHRLNSEFSGFTVVGDAAEFETLKECGMEKA- 85 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGG---------GGGSCTTCCSEEEESCTTSHHHHHTTTGGGC-
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH---------HHHHHhcCCCcEEEecCCCHHHHHHcCcccC-
Confidence 56789999996 999999999999999999999984321 12222 34677888999998877765 5555
Q ss_pred ccEEEEccc
Q 013602 175 FTHVMHLAA 183 (439)
Q Consensus 175 ~d~Vi~~Ag 183 (439)
|+||.+.+
T Consensus 86 -d~Vi~~~~ 93 (155)
T 2g1u_A 86 -DMVFAFTN 93 (155)
T ss_dssp -SEEEECSS
T ss_pred -CEEEEEeC
Confidence 99998875
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=84.49 Aligned_cols=171 Identities=13% Similarity=0.117 Sum_probs=100.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC--e-----EEEEECCCCCCChhHHHHHHHhhh--cCCeEEEEcccCCHHHHHHhh
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD--G-----VLGLDNFNDYYDPSLKKARQALLE--RSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~--~-----V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
++|+||||+|+||++++..|+..|. + ++++++.... ....-...+... .+-+. ++.......+.+
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~--~~~~g~a~DL~~~~~~~~~----~~~~~~~~~~~~ 77 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMM--GVLDGVLMELQDCALPLLK----DVIATDKEEIAF 77 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGH--HHHHHHHHHHHHTCCTTEE----EEEEESCHHHHT
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCcc--ccchhhHhhhHhhhhcccC----CEEEcCCcHHHh
Confidence 6899999999999999999998875 5 8888872110 001111111111 12121 222223356677
Q ss_pred cccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCCc---ccCCCCCCCCCCCCCCCC
Q 013602 171 DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP-AIVWASSSS---VYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~-~~V~~SS~~---v~g~~~~~~~~e~~~~~~ 246 (439)
+++ |+||++||.. +..-.+..+.++.|+..+.++++.++++++.. +++.+|--. .|-. .+.... .
T Consensus 78 ~da--DvVvitAg~p--rkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~------~~~~~~-~ 146 (333)
T 5mdh_A 78 KDL--DVAILVGSMP--RRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA------SKSAPS-I 146 (333)
T ss_dssp TTC--SEEEECCSCC--CCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH------HHTCTT-S
T ss_pred CCC--CEEEEeCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHH------HHHcCC-C
Confidence 777 9999999863 22334556789999999999999999998754 577777410 0000 000000 1
Q ss_pred CCChH-HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 247 PASLY-AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 247 p~~~Y-~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
|.... +.+-+-.-++-..+++++|+....|+--.|.|..++
T Consensus 147 p~~~ig~~t~LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd 188 (333)
T 5mdh_A 147 PKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS 188 (333)
T ss_dssp CGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred CcCEEEEEEhHHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC
Confidence 11112 223344444555556666776666664445787654
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.1e-06 Score=71.38 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=70.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh--hccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL--FDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~--~~~~ 173 (439)
+.+++|+|+| .|.+|..+++.|.+. |++|++++++. ...+.....++.++.+|.+|.+.+.++ ++++
T Consensus 37 ~~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~---------~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~a 106 (183)
T 3c85_A 37 PGHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIRE---------EAAQQHRSEGRNVISGDATDPDFWERILDTGHV 106 (183)
T ss_dssp CTTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCH---------HHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCC
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCH---------HHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCC
Confidence 4567899999 599999999999999 99999999822 122222335788889999999988877 6665
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWA 224 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~ 224 (439)
|+||.+.+. . .. ...++..+++.+...++|..
T Consensus 107 --d~vi~~~~~---------~----~~----~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 107 --KLVLLAMPH---------H----QG----NQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp --CEEEECCSS---------H----HH----HHHHHHHHHHTTCCSEEEEE
T ss_pred --CEEEEeCCC---------h----HH----HHHHHHHHHHHCCCCEEEEE
Confidence 999987642 0 11 23455667776644455543
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.9e-06 Score=79.56 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
+.+++|.|+|++|+||+.++..|+.+| .+|+++|++.++ ......+..... +...++.-.....++++++
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k----~~g~a~DL~~~~---~~~~~i~~t~d~~~al~dA- 77 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVG----LEGVAEEIRHCG---FEGLNLTFTSDIKEALTDA- 77 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHH----HHHHHHHHHHHC---CTTCCCEEESCHHHHHTTE-
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchh----HHHHHHhhhhCc---CCCCceEEcCCHHHHhCCC-
Confidence 567899999999999999999999998 589999983221 111111111110 0001111112345667777
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCe-EEEec
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA-IVWAS 225 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~-~V~~S 225 (439)
|+||.+||.. +....+..+.+..|......+.+.+.+..+... ++.+|
T Consensus 78 -DvVvitaG~p--~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs 126 (343)
T 3fi9_A 78 -KYIVSSGGAP--RKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126 (343)
T ss_dssp -EEEEECCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred -CEEEEccCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec
Confidence 9999999862 223344567899999999999999999887654 66666
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.1e-05 Score=63.82 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=57.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~ 177 (439)
.++|+|.|+ |.+|..+++.|.+.|++|++++++. ...+.....++.++.+|.++++.++++ ++++ |.
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~---------~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~a--d~ 74 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSR---------TRVDELRERGVRAVLGNAANEEIMQLAHLECA--KW 74 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCH---------HHHHHHHHTTCEEEESCTTSHHHHHHTTGGGC--SE
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCH---------HHHHHHHHcCCCEEECCCCCHHHHHhcCcccC--CE
Confidence 357999996 9999999999999999999999822 222223346889999999999988875 4455 88
Q ss_pred EEEccc
Q 013602 178 VMHLAA 183 (439)
Q Consensus 178 Vi~~Ag 183 (439)
||-+.+
T Consensus 75 vi~~~~ 80 (140)
T 3fwz_A 75 LILTIP 80 (140)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 887654
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=3.9e-05 Score=73.57 Aligned_cols=100 Identities=17% Similarity=0.121 Sum_probs=64.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh---hccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL---FDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~---~~~~ 173 (439)
..+++|||+||+|+||..+++.+...|++|++++|+.+ ........ +.. ..+|..+.+..+++ ....
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~------~~~~~~~~---g~~-~~~~~~~~~~~~~~~~~~~~~ 208 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ------KAQSALKA---GAW-QVINYREEDLVERLKEITGGK 208 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH------HHHHHHHH---TCS-EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH------HHHHHHHc---CCC-EEEECCCccHHHHHHHHhCCC
Confidence 35789999999999999999999999999999998221 11111111 222 12466655444433 3333
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSS 227 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~ 227 (439)
.+|+||+|+|... ....++.++..| ++|.+++.
T Consensus 209 ~~D~vi~~~g~~~------------------~~~~~~~l~~~G---~iv~~g~~ 241 (327)
T 1qor_A 209 KVRVVYDSVGRDT------------------WERSLDCLQRRG---LMVSFGNS 241 (327)
T ss_dssp CEEEEEECSCGGG------------------HHHHHHTEEEEE---EEEECCCT
T ss_pred CceEEEECCchHH------------------HHHHHHHhcCCC---EEEEEecC
Confidence 5799999998210 233445555444 88888764
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.8e-05 Score=76.07 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=51.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcc---c
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDV---V 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~---~ 173 (439)
..+++||||||+|+||..+++.+...|++|++++++.+ .....+ ..+.. ..+|.++.+++.+.+.. -
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~------~~~~~~---~~g~~-~~~d~~~~~~~~~~~~~~~~~ 213 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE------KIAYLK---QIGFD-AAFNYKTVNSLEEALKKASPD 213 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHH------HHHHHH---HTTCS-EEEETTSCSCHHHHHHHHCTT
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHH------HHHHHH---hcCCc-EEEecCCHHHHHHHHHHHhCC
Confidence 45789999999999999999999999999999998221 111111 11222 23477662223322221 2
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|+||||+|.
T Consensus 214 ~~d~vi~~~g~ 224 (333)
T 1v3u_A 214 GYDCYFDNVGG 224 (333)
T ss_dssp CEEEEEESSCH
T ss_pred CCeEEEECCCh
Confidence 57999999983
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00012 Score=65.84 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=56.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~V 178 (439)
|+|+|+|+ |.+|+++++.|.++|++|++++++. ... .......++.++.+|.+|.+.++++ ++++ |+|
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~-------~~~-~~l~~~~~~~~i~gd~~~~~~l~~a~i~~a--d~v 69 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDR-------ELC-EEFAKKLKATIIHGDGSHKEILRDAEVSKN--DVV 69 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCH-------HHH-HHHHHHSSSEEEESCTTSHHHHHHHTCCTT--CEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCH-------HHH-HHHHHHcCCeEEEcCCCCHHHHHhcCcccC--CEE
Confidence 57999996 9999999999999999999999822 111 1111234788999999999999887 5656 998
Q ss_pred EEccc
Q 013602 179 MHLAA 183 (439)
Q Consensus 179 i~~Ag 183 (439)
|-+.+
T Consensus 70 i~~~~ 74 (218)
T 3l4b_C 70 VILTP 74 (218)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 86653
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00011 Score=70.15 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=77.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCHHHHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
..++|.|+|+ |++|..++..|+..|. +|++++++.++.............. ...+.....| .++++++
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~-------~~a~~~a- 74 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT-------YEDCKDA- 74 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC-------GGGGTTC-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc-------HHHhCCC-
Confidence 4578999996 9999999999999986 8999998321100000000010000 1244444333 2356667
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
|+||.+||.. +....+..+.+..|......+.+.+.+..+...++++|-
T Consensus 75 -DvVvi~ag~p--~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 75 -DIVCICAGAN--QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp -SEEEECCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred -CEEEEecccC--CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 9999999862 222234567899999999999999999887667777773
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.3e-05 Score=73.80 Aligned_cols=99 Identities=20% Similarity=0.140 Sum_probs=64.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~~ 174 (439)
.+++|||+||+|+||..+++.+...|++|++++++.+ +....... +... .+|..+.+ .+.++.....
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~------~~~~~~~~---ga~~-~~d~~~~~~~~~~~~~~~~~~ 235 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSED------KLRRAKAL---GADE-TVNYTHPDWPKEVRRLTGGKG 235 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHH------HHHHHHHH---TCSE-EEETTSTTHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH------HHHHHHhc---CCCE-EEcCCcccHHHHHHHHhCCCC
Confidence 5789999999999999999999999999999998221 11111111 2222 24666543 3444443335
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSS 227 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~ 227 (439)
+|+||+++|. .. ....++.++..| ++|.+++.
T Consensus 236 ~d~vi~~~g~-~~-----------------~~~~~~~l~~~G---~~v~~g~~ 267 (343)
T 2eih_A 236 ADKVVDHTGA-LY-----------------FEGVIKATANGG---RIAIAGAS 267 (343)
T ss_dssp EEEEEESSCS-SS-----------------HHHHHHHEEEEE---EEEESSCC
T ss_pred ceEEEECCCH-HH-----------------HHHHHHhhccCC---EEEEEecC
Confidence 7999999982 11 234555555544 89888764
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.81 E-value=5.7e-05 Score=72.58 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=52.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHH---HHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMAL---LKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---~~~~~~~~ 173 (439)
..+++|||+||+|+||..+++.+...|++|++++|+.+ ........ +.. ...|.++.+. +.+.....
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~------~~~~~~~~---g~~-~~~d~~~~~~~~~i~~~~~~~ 213 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEE------KAETARKL---GCH-HTINYSTQDFAEVVREITGGK 213 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHH------HHHHHHHH---TCS-EEEETTTSCHHHHHHHHHTTC
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHH------HHHHHHHc---CCC-EEEECCCHHHHHHHHHHhCCC
Confidence 35789999999999999999999999999999998321 11111111 222 1236665443 33443333
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|+||+|+|.
T Consensus 214 ~~d~vi~~~g~ 224 (333)
T 1wly_A 214 GVDVVYDSIGK 224 (333)
T ss_dssp CEEEEEECSCT
T ss_pred CCeEEEECCcH
Confidence 57999999984
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0001 Score=71.52 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=52.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHH---HHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMAL---LKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---~~~~~~~~ 173 (439)
..+++|||+||+|+||..+++.+...|++|++++|+.+ +....+.. +.. ..+|..+.+. +.+.....
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~------~~~~~~~~---g~~-~~~~~~~~~~~~~~~~~~~~~ 230 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQK------KLQMAEKL---GAA-AGFNYKKEDFSEATLKFTKGA 230 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH------HHHHHHHH---TCS-EEEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHH------HHHHHHHc---CCc-EEEecCChHHHHHHHHHhcCC
Confidence 35789999999999999999999999999999998221 11111111 222 2246655443 33433333
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|+||+|+|.
T Consensus 231 ~~d~vi~~~G~ 241 (354)
T 2j8z_A 231 GVNLILDCIGG 241 (354)
T ss_dssp CEEEEEESSCG
T ss_pred CceEEEECCCc
Confidence 57999999984
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=5.3e-05 Score=73.46 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=52.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHH---HHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALL---KKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~---~~~~~~~ 173 (439)
..+++|||+||+|+||..+++.+...|++|++++++.+ +.+.....+.. ..+|..+.+.. .+.....
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~---------~~~~~~~~ga~-~~~d~~~~~~~~~~~~~~~~~ 238 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE---------GQKIVLQNGAH-EVFNHREVNYIDKIKKYVGEK 238 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH---------HHHHHHHTTCS-EEEETTSTTHHHHHHHHHCTT
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChh---------HHHHHHHcCCC-EEEeCCCchHHHHHHHHcCCC
Confidence 35789999999999999999999999999999998221 11111112222 22466654433 3333333
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|+||+|+|.
T Consensus 239 ~~D~vi~~~G~ 249 (351)
T 1yb5_A 239 GIDIIIEMLAN 249 (351)
T ss_dssp CEEEEEESCHH
T ss_pred CcEEEEECCCh
Confidence 57999999973
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=3.1e-05 Score=74.90 Aligned_cols=77 Identities=25% Similarity=0.171 Sum_probs=52.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHH----HHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMAL----LKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~----~~~~~~~ 172 (439)
..+++|||+||+|+||..+++.+...|++|++++|+.++ . ...... +.. ...|+++.++ +.++...
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~-----~-~~~~~~---g~~-~~~d~~~~~~~~~~~~~~~~~ 237 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGK-----E-ELFRSI---GGE-VFIDFTKEKDIVGAVLKATDG 237 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTH-----H-HHHHHT---TCC-EEEETTTCSCHHHHHHHHHTS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHH-----H-HHHHHc---CCc-eEEecCccHhHHHHHHHHhCC
Confidence 357899999999999999999999999999999984431 1 111111 222 2247764333 3333334
Q ss_pred cCccEEEEcccc
Q 013602 173 VSFTHVMHLAAQ 184 (439)
Q Consensus 173 ~~~d~Vi~~Ag~ 184 (439)
.+|+||+++|.
T Consensus 238 -~~D~vi~~~g~ 248 (347)
T 2hcy_A 238 -GAHGVINVSVS 248 (347)
T ss_dssp -CEEEEEECSSC
T ss_pred -CCCEEEECCCc
Confidence 67999999973
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=6.6e-05 Score=71.70 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=67.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhh----cCCeEEEEcccCCHHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLE----RSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
..+++|.|+|+ |.+|..++..|+..|. +|++++++.++ ..-...+... ...+.....| .+.+
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k----~~g~a~DL~~~~~~~~~~~i~~~~-------~~a~ 74 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDK----TKGDAIDLEDALPFTSPKKIYSAE-------YSDA 74 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHH----HHHHHHHHHTTGGGSCCCEEEECC-------GGGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHH----HHHHHhhHhhhhhhcCCcEEEECc-------HHHh
Confidence 35679999996 9999999999999886 89999983211 1111111111 1234433322 2456
Q ss_pred cccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 171 DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
+++ |+||++||.. +..-.+..+.++.|..-...+.+.+.+..+...++.+|-
T Consensus 75 ~~a--DiVvi~ag~~--~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 75 KDA--DLVVITAGAP--QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp TTC--SEEEECCCCC------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred cCC--CEEEECCCCC--CCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 777 9999999863 222233456788899889999999998887767777763
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=71.38 Aligned_cols=76 Identities=21% Similarity=0.103 Sum_probs=57.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+++|+|+|+ |.||..+++.|...|++|++.+|+. ...+...+.. +.. +.+|..+.+.+.++++++ |
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~-----~~~~~~~~~~---g~~-~~~~~~~~~~l~~~~~~~--D 231 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNH-----KRLQYLDDVF---GGR-VITLTATEANIKKSVQHA--D 231 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHT---TTS-EEEEECCHHHHHHHHHHC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCH-----HHHHHHHHhc---Cce-EEEecCCHHHHHHHHhCC--C
Confidence 56789999998 9999999999999999999999822 1111111111 222 456788888999998877 9
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+||++++.
T Consensus 232 vVi~~~g~ 239 (369)
T 2eez_A 232 LLIGAVLV 239 (369)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99999985
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0003 Score=67.08 Aligned_cols=118 Identities=10% Similarity=0.068 Sum_probs=77.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHh-hhcCCeEEE-EcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQAL-LERSGIFIV-EGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~-~~Dl~d~~~~~~~~~~~ 173 (439)
|.+++|.|+|+ |.+|..++..|+..|+ +|++++++.+............. .......+. ..| . ++++++
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d---~----~a~~~a 76 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGAND---Y----AAIEGA 76 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESS---G----GGGTTC
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCC---H----HHHCCC
Confidence 66789999998 9999999999999998 99999986643211111111111 111122222 222 2 467777
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
|+||.+||.. +..-.+..+.+..|..-...+.+.+.+..+...+|.+|-
T Consensus 77 --DiVIiaag~p--~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 77 --DVVIVTAGVP--RKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp --SEEEECCSCC--CC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred --CEEEEccCcC--CCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 9999999863 222223456788899999999999998887667777773
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00017 Score=69.30 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=63.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 173 (439)
..+++|||+||+|.||..+++.+...|++|++++++.+ +.+....-+... ..|..+.+ .+.++....
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~---------~~~~~~~~ga~~-~~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE---------KLKIAKEYGAEY-LINASKEDILRQVLKFTNGK 216 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH---------HHHHHHHTTCSE-EEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHcCCcE-EEeCCCchHHHHHHHHhCCC
Confidence 35789999999999999999999999999999998221 111111122221 23444433 444444444
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
.+|+||+++|... ....++.++..| ++|.++.
T Consensus 217 g~D~vid~~g~~~------------------~~~~~~~l~~~G---~iv~~G~ 248 (334)
T 3qwb_A 217 GVDASFDSVGKDT------------------FEISLAALKRKG---VFVSFGN 248 (334)
T ss_dssp CEEEEEECCGGGG------------------HHHHHHHEEEEE---EEEECCC
T ss_pred CceEEEECCChHH------------------HHHHHHHhccCC---EEEEEcC
Confidence 6799999998411 234455555544 8888775
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00015 Score=65.81 Aligned_cols=71 Identities=20% Similarity=0.144 Sum_probs=56.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~ 177 (439)
.++|+|+|+ |.+|..+++.|.+.|+ |++++++.+ ..+... .++.++.+|.+|.+.++++ ++++ |.
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~---------~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a--d~ 74 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENV---------RKKVLR-SGANFVHGDPTRVSDLEKANVRGA--RA 74 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGG---------HHHHHH-TTCEEEESCTTCHHHHHHTTCTTC--SE
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHH---------HHHHHh-cCCeEEEcCCCCHHHHHhcCcchh--cE
Confidence 468999997 9999999999999999 999988321 111222 5789999999999999887 7766 99
Q ss_pred EEEccc
Q 013602 178 VMHLAA 183 (439)
Q Consensus 178 Vi~~Ag 183 (439)
||.+.+
T Consensus 75 vi~~~~ 80 (234)
T 2aef_A 75 VIVDLE 80 (234)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 987653
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00018 Score=68.39 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=58.8
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHH-HhhhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQ-ALLERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
...+++++|+|+ |++|+.++..|++.|. +|++++|+.+. ....+... +.....++.+...++.+.+.+.+.+.++
T Consensus 151 ~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~--~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 227 (315)
T 3tnl_A 151 DIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDF--YANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAES 227 (315)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTT--HHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTC
T ss_pred CccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCch--HHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCC
Confidence 367899999996 8999999999999998 89999995211 11111111 1111223445556777878888888877
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
|+|||+...
T Consensus 228 --DiIINaTp~ 236 (315)
T 3tnl_A 228 --VIFTNATGV 236 (315)
T ss_dssp --SEEEECSST
T ss_pred --CEEEECccC
Confidence 999998754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=9.7e-05 Score=71.04 Aligned_cols=102 Identities=23% Similarity=0.218 Sum_probs=64.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhc--cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFD--VV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~--~~ 173 (439)
..+++|||+||+|+||..+++.+...|++|++++++. .+.+.. ..-+... ..|..+.+..+.+.+ .-
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~---------~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 217 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGA---------EKCRFLVEELGFDG-AIDYKNEDLAAGLKRECPK 217 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH---------HHHHHHHHTTCCSE-EEETTTSCHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH---------HHHHHHHHHcCCCE-EEECCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999822 122222 2223322 235555443333322 22
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV 229 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v 229 (439)
.+|+||+|+|.. .....++.++..| ++|.++...-
T Consensus 218 ~~d~vi~~~g~~------------------~~~~~~~~l~~~G---~iv~~G~~~~ 252 (336)
T 4b7c_A 218 GIDVFFDNVGGE------------------ILDTVLTRIAFKA---RIVLCGAISQ 252 (336)
T ss_dssp CEEEEEESSCHH------------------HHHHHHTTEEEEE---EEEECCCGGG
T ss_pred CceEEEECCCcc------------------hHHHHHHHHhhCC---EEEEEeeccc
Confidence 579999999731 1223444444443 8998886553
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=7e-05 Score=72.30 Aligned_cols=77 Identities=25% Similarity=0.254 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh-cCCeEEEEcccCCH----HHHHHhhc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE-RSGIFIVEGDINDM----ALLKKLFD 171 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~----~~~~~~~~ 171 (439)
..+++|||+||+|+||..+++.+...|++|++.+++. .+.+... .-+... ..|..+. +.+.++.
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~---------~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~- 222 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK---------EKVDLLKTKFGFDD-AFNYKEESDLTAALKRCF- 222 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH---------HHHHHHHHTSCCSE-EEETTSCSCSHHHHHHHC-
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH---------HHHHHHHHHcCCce-EEecCCHHHHHHHHHHHh-
Confidence 4578999999999999999999999999999999821 1111111 123222 2366543 2333332
Q ss_pred ccCccEEEEcccc
Q 013602 172 VVSFTHVMHLAAQ 184 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~ 184 (439)
.-.+|+||+|+|.
T Consensus 223 ~~~~d~vi~~~g~ 235 (345)
T 2j3h_A 223 PNGIDIYFENVGG 235 (345)
T ss_dssp TTCEEEEEESSCH
T ss_pred CCCCcEEEECCCH
Confidence 2257999999973
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00062 Score=64.87 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=78.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhh---hcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
|..++|.|+|+ |.+|..++..|+..|. +|++++++.++..... ...... ......+... .| .+++++
T Consensus 3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a--~dL~~~~~~~~~~~~v~~t--~d----~~a~~~ 73 (321)
T 3p7m_A 3 MARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKA--LDLLQTCPIEGVDFKVRGT--ND----YKDLEN 73 (321)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHH--HHHHTTHHHHTCCCCEEEE--SC----GGGGTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHH--HHHHhhhhhcCCCcEEEEc--CC----HHHHCC
Confidence 55689999995 9999999999999988 9999998654321111 011110 1112222211 12 246777
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+ |+||..||.. +..-....+.+..|......+.+.+.+..+...+|++|
T Consensus 74 a--DvVIi~ag~p--~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 74 S--DVVIVTAGVP--RKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp C--SEEEECCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred C--CEEEEcCCcC--CCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 7 9999999863 22223456788899999999999999888766777776
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00041 Score=65.28 Aligned_cols=114 Identities=18% Similarity=0.110 Sum_probs=76.7
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhh---cCCeEEEEcccCCHHHHHHhhcccC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLE---RSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
|+|.|+|+ |.+|..++..|+..|+ +|.+.+++.+..+.. ........ .....+.-. +| .+++++.
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~--~~dl~~~~~~~~~~~~i~~t--~d----~~a~~~a- 70 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGE--AMDLAHAAAGIDKYPKIVGG--AD----YSLLKGS- 70 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHH--HHHHHHHHHTTTCCCEEEEE--SC----GGGGTTC-
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHH--HHHHHhhhhhcCCCCEEEEe--CC----HHHhCCC-
Confidence 58999998 9999999999999998 999999844221100 00111111 112222211 12 4567777
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
|+||..||.. +..-.+..+.+..|..-...+.+.+.+..+...|+++|-
T Consensus 71 -DiVViaag~~--~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 71 -EIIVVTAGLA--RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp -SEEEECCCCC--CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred -CEEEECCCCC--CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 9999999863 222234567889999999999999999887767877773
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00018 Score=68.78 Aligned_cols=78 Identities=24% Similarity=0.210 Sum_probs=52.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 173 (439)
..+++|||+||+|.||..+++.+...|++|++.+++.+ +....... +.. ...|..+.+ .+.+...+.
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~------~~~~~~~~---Ga~-~~~~~~~~~~~~~~~~~~~~~ 208 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPE------KAAHAKAL---GAW-ETIDYSHEDVAKRVLELTDGK 208 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHH------HHHHHHHH---TCS-EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHH------HHHHHHHc---CCC-EEEeCCCccHHHHHHHHhCCC
Confidence 35789999999999999999999999999999998221 11111111 221 123444433 344444444
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|+||+++|.
T Consensus 209 g~Dvvid~~g~ 219 (325)
T 3jyn_A 209 KCPVVYDGVGQ 219 (325)
T ss_dssp CEEEEEESSCG
T ss_pred CceEEEECCCh
Confidence 67999999984
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00037 Score=68.95 Aligned_cols=99 Identities=22% Similarity=0.310 Sum_probs=71.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~ 177 (439)
+++|+|+|+ |-+|..+++.|.++|++|++++++. ...+.....++.++.+|.++.+.++++ ++++ |+
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~---------~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A--~~ 71 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDP---------DHIETLRKFGMKVFYGDATRMDLLESAGAAKA--EV 71 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCH---------HHHHHHHHTTCCCEESCTTCHHHHHHTTTTTC--SE
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCH---------HHHHHHHhCCCeEEEcCCCCHHHHHhcCCCcc--CE
Confidence 467999996 9999999999999999999999822 222223345788999999999999887 6666 88
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
||-+.+. . . ....++..+++.++..+||.-..
T Consensus 72 viv~~~~---------~----~----~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 72 LINAIDD---------P----Q----TNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp EEECCSS---------H----H----HHHHHHHHHHHHCTTCEEEEEES
T ss_pred EEECCCC---------h----H----HHHHHHHHHHHhCCCCeEEEEEC
Confidence 8866531 1 1 23456666777765435554443
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00012 Score=71.07 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=63.7
Q ss_pred CCC--CEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhc-CCeEEEEcccCCHH---HHHHh
Q 013602 97 RNG--ISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLER-SGIFIVEGDINDMA---LLKKL 169 (439)
Q Consensus 97 ~~~--~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~---~~~~~ 169 (439)
..+ ++|||+||+|+||..+++.+...|+ +|++++++. . +.+.... -+.. ..+|..+.+ .+.+.
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~-----~----~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~ 226 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH-----E----KCILLTSELGFD-AAINYKKDNVAEQLRES 226 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCH-----H----HHHHHHHTSCCS-EEEETTTSCHHHHHHHH
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCH-----H----HHHHHHHHcCCc-eEEecCchHHHHHHHHh
Confidence 356 8999999999999999999999999 999999821 1 1111111 2222 224666543 33333
Q ss_pred hcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 170 FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 170 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
..+ .+|+||+|+|.. .....++.++..| ++|.++...
T Consensus 227 ~~~-~~d~vi~~~G~~------------------~~~~~~~~l~~~G---~iv~~G~~~ 263 (357)
T 2zb4_A 227 CPA-GVDVYFDNVGGN------------------ISDTVISQMNENS---HIILCGQIS 263 (357)
T ss_dssp CTT-CEEEEEESCCHH------------------HHHHHHHTEEEEE---EEEECCCGG
T ss_pred cCC-CCCEEEECCCHH------------------HHHHHHHHhccCc---EEEEECCcc
Confidence 333 679999999830 1233444444444 888887643
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00031 Score=68.04 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=51.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 173 (439)
..+++|||+||+|.||..+++.+...|++|++.+++.+ +....... +... ..|..+.+ .+.++. ..
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~------~~~~~~~l---Ga~~-~~~~~~~~~~~~~~~~~-~~ 234 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTG------KCEACERL---GAKR-GINYRSEDFAAVIKAET-GQ 234 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH------HHHHHHHH---TCSE-EEETTTSCHHHHHHHHH-SS
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH------HHHHHHhc---CCCE-EEeCCchHHHHHHHHHh-CC
Confidence 35789999999999999999999999999999998221 11111112 2221 13444433 344433 44
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|+||+++|.
T Consensus 235 g~Dvvid~~g~ 245 (353)
T 4dup_A 235 GVDIILDMIGA 245 (353)
T ss_dssp CEEEEEESCCG
T ss_pred CceEEEECCCH
Confidence 67999999984
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00041 Score=66.29 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhh---c-CCeEEEEcccCCHHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLE---R-SGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~---~-~~v~~~~~Dl~d~~~~~~~~ 170 (439)
...++|.|+|+ |.+|..++..|+.+|. +|++++++.++ ......+... - .....+.. .|. +.+
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~----~~g~a~DL~~~~~~~~~~~i~~~--~d~----~~~ 85 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDK----LKGEMMDLQHGSLFLKTPKIVSS--KDY----SVT 85 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHH----HHHHHHHHHHTGGGCSCCEEEEC--SSG----GGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHH----HHHHHHhhhhhhhccCCCeEEEc--CCH----HHh
Confidence 45689999997 9999999999999986 89999983211 1111111111 1 11122221 233 246
Q ss_pred cccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 171 DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
+++ |+||.+||.. +..-.+..+.++.|..-...+.+.+.+..+...++++|-
T Consensus 86 ~~a--DiVvi~aG~~--~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 86 ANS--KLVIITAGAR--QQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp TTE--EEEEECCSCC--CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCC--CEEEEccCCC--CCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 666 9999999863 233345567899999999999999999877667777773
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00059 Score=64.82 Aligned_cols=119 Identities=19% Similarity=0.109 Sum_probs=77.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCC--CCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFN--DYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~--~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
+..++|.|+|+ |.+|..++..|+..|+ +|++++++. .............. .......+... .| .+.+++
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t--~d----~~a~~~ 78 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT--SD----YADTAD 78 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE--SC----GGGGTT
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc--CC----HHHhCC
Confidence 45679999996 9999999999999999 999999841 11000000000000 00011122111 12 245666
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
+ |+||.+||.. +..-.+..+.+..|......+.+.+.+..+...++.+|-
T Consensus 79 a--DvVIiaag~p--~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 79 S--DVVVITAGIA--RKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp C--SEEEECCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred C--CEEEEeCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 6 9999999863 222344567899999999999999998887667777773
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00018 Score=67.01 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=32.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
+.+++|+|+|+ |++|+.++..|++.|++|++.+|
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R 150 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNR 150 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEEC
Confidence 57899999997 89999999999999999999998
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00023 Score=68.68 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=52.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-HHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-MALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~ 175 (439)
..+++|||+||+|.||..+++.+...|++|++++++.++ .+ ....... -.++..+ .+ .+.+.++..+..+
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~-----~~-~~~~~ga--~~v~~~~-~~~~~~v~~~~~~~g~ 228 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAA-----TE-FVKSVGA--DIVLPLE-EGWAKAVREATGGAGV 228 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGG-----HH-HHHHHTC--SEEEESS-TTHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH-----HH-HHHhcCC--cEEecCc-hhHHHHHHHHhCCCCc
Confidence 357899999999999999999999999999999984331 11 1111211 1223333 22 2334445444467
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||+++|.
T Consensus 229 Dvvid~~g~ 237 (342)
T 4eye_A 229 DMVVDPIGG 237 (342)
T ss_dssp EEEEESCC-
T ss_pred eEEEECCch
Confidence 999999984
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=9.9e-05 Score=62.81 Aligned_cols=74 Identities=15% Similarity=0.074 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHhCCCeEEEEECCCCCCChh--HHHHHHHhhhcCCeEEEEcccCCH--HHHHHhhccc----CccEEEE
Q 013602 109 GFVGTHVSAALKRRGDGVLGLDNFNDYYDPS--LKKARQALLERSGIFIVEGDINDM--ALLKKLFDVV----SFTHVMH 180 (439)
Q Consensus 109 G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~v~~~~~Dl~d~--~~~~~~~~~~----~~d~Vi~ 180 (439)
|.++.++++.|++.|++|++..|........ ....... ....+..+.+|++++ ++++++++.+ .-|++||
T Consensus 26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~--~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVn 103 (157)
T 3gxh_A 26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQ--AGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVH 103 (157)
T ss_dssp BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHH--TTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHH--cCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 5688999999999999999988855432211 1111111 123456678899999 8888777643 3399999
Q ss_pred cccc
Q 013602 181 LAAQ 184 (439)
Q Consensus 181 ~Ag~ 184 (439)
|||.
T Consensus 104 nAgg 107 (157)
T 3gxh_A 104 CLAN 107 (157)
T ss_dssp CSBS
T ss_pred CCCC
Confidence 9986
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00053 Score=65.12 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=74.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
|+|.|+|+ |.+|..++..|+..|. +|++++++.++............ .....+.+...| + .+.++++ |
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~----~~a~~~a--D 71 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D----YGPTEDS--D 71 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S----SGGGTTC--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C----HHHhCCC--C
Confidence 58999996 9999999999999886 89999986543111111111110 111233332112 2 3456667 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+||.+||.. +..-.+..+.+..|..-...+.+.+.+..+...++++|
T Consensus 72 vVii~ag~~--~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 118 (314)
T 3nep_X 72 VCIITAGLP--RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA 118 (314)
T ss_dssp EEEECCCC---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred EEEECCCCC--CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 999999863 22223456788999999999999999988776777777
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00033 Score=68.08 Aligned_cols=100 Identities=20% Similarity=0.151 Sum_probs=63.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 173 (439)
..+++|||+||+|.||..+++.+...|++|++.+++. .+.+....-+...+ .|..+.+ .+.+.. ..
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~---------~~~~~~~~~Ga~~~-~~~~~~~~~~~~~~~~-~~ 230 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSD---------EKSAFLKSLGCDRP-INYKTEPVGTVLKQEY-PE 230 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSH---------HHHHHHHHTTCSEE-EETTTSCHHHHHHHHC-TT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCH---------HHHHHHHHcCCcEE-EecCChhHHHHHHHhc-CC
Confidence 3578999999999999999999999999999999821 11111111222221 2444322 233322 22
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
.+|+||+++|.. .....++.++..| ++|.+++..
T Consensus 231 g~D~vid~~g~~------------------~~~~~~~~l~~~G---~iv~~g~~~ 264 (362)
T 2c0c_A 231 GVDVVYESVGGA------------------MFDLAVDALATKG---RLIVIGFIS 264 (362)
T ss_dssp CEEEEEECSCTH------------------HHHHHHHHEEEEE---EEEECCCGG
T ss_pred CCCEEEECCCHH------------------HHHHHHHHHhcCC---EEEEEeCCC
Confidence 579999999730 1234555555544 899888754
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0012 Score=62.85 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=75.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhc-CCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLER-SGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+..++|.|+|+ |.+|..++..|+.+| .+|.+++++.++............... ..+.+. .| + .++++++
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~-~~--~----~~a~~~a 75 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK-AG--E----YSDCHDA 75 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEE-EC--C----GGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEE-eC--C----HHHhCCC
Confidence 45579999998 999999999999888 489999873221110000000000000 233333 22 2 4457777
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||..+|... .......+.+..|..-...+.+.+.+..+...+|++|
T Consensus 76 --DvVvi~ag~~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 76 --DLVVICAGAAQ--KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp --SEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred --CEEEECCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 99999998632 2223345678889988999999999887765676655
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0011 Score=63.10 Aligned_cols=115 Identities=14% Similarity=0.088 Sum_probs=72.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
.++|.|+|+ |++|..++..|+..|. +|+++|.+.++.+...............+.+. . .+ .++++++ |
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~--~~----~~a~~~a--D 76 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A--GD----YSDVKDC--D 76 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C----GGGGTTC--S
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE-E--CC----HHHhCCC--C
Confidence 468999998 9999999999999987 99999997654442211110000000122222 1 12 3457777 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+||.+++... .......+.+..|+.....+.+.+.+..+...+|++|
T Consensus 77 vVii~~g~p~--k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 77 VIVVTAGANR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp EEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred EEEEcCCCCC--CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 9999998632 2223345678889999999999999887665666654
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0012 Score=63.47 Aligned_cols=175 Identities=16% Similarity=0.105 Sum_probs=101.2
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCCCCCChhHHHH--HHHhhhcCCeEEEEcccCCHHHH
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGD-------GVLGLDNFNDYYDPSLKKA--RQALLERSGIFIVEGDINDMALL 166 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~--~~~~~~~~~v~~~~~Dl~d~~~~ 166 (439)
.+...+|.|+||+|.||+.++..|+.... ++.+++..... ....-. .......+...-+. +++ ..
T Consensus 21 s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~--~~~~Gva~DL~~~~~~~~~~~~--~~~--~~ 94 (345)
T 4h7p_A 21 SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPAL--KALAGVEAELEDCAFPLLDKVV--VTA--DP 94 (345)
T ss_dssp -CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGH--HHHHHHHHHHHHTTCTTEEEEE--EES--CH
T ss_pred CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCcc--ccchhhhhhhhhcCccCCCcEE--EcC--Ch
Confidence 35667999999999999999999987642 68888762110 000101 11111112211111 111 13
Q ss_pred HHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCC-----cccCCCCCCCCCC
Q 013602 167 KKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSS-----SVYGLNTKVPFSE 240 (439)
Q Consensus 167 ~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~-----~v~g~~~~~~~~e 240 (439)
.+++++. |+||-+||. ++.+-....+.++.|..-...+.+.+.+.. +.-+++.+|-- .++-...
T Consensus 95 ~~a~~~a--dvVvi~aG~--prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~------ 164 (345)
T 4h7p_A 95 RVAFDGV--AIAIMCGAF--PRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSA------ 164 (345)
T ss_dssp HHHTTTC--SEEEECCCC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHT------
T ss_pred HHHhCCC--CEEEECCCC--CCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHc------
Confidence 5678888 999999997 333445567899999999999999998764 33256666631 1100000
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
...+ .+...-+.+-+-.-++-..++++.|+....|+-..|.|..++
T Consensus 165 ~g~~-~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~ 210 (345)
T 4h7p_A 165 QGKL-NPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS 210 (345)
T ss_dssp TTCS-CGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST
T ss_pred cCCC-CcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC
Confidence 0001 222223334455555556666667887777765567777654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00026 Score=68.18 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=52.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 173 (439)
..+++|||+||+|.||..+++.+...|++|++++++.++. . ..... +... ..|..+.+ .+.+.....
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~----~--~~~~l---ga~~-~~~~~~~~~~~~~~~~~~~~ 212 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHT----E--ELLRL---GAAY-VIDTSTAPLYETVMELTNGI 212 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTH----H--HHHHH---TCSE-EEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH----H--HHHhC---CCcE-EEeCCcccHHHHHHHHhCCC
Confidence 3578999999999999999999999999999999855421 1 11111 2211 12444433 344444444
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|+||+|+|.
T Consensus 213 g~Dvvid~~g~ 223 (340)
T 3gms_A 213 GADAAIDSIGG 223 (340)
T ss_dssp CEEEEEESSCH
T ss_pred CCcEEEECCCC
Confidence 67999999984
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.002 Score=61.03 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=76.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhC-C--CeEEEEECCCCCCChhHHHHHHHhhhcC-CeEEEEcccCCHHHHHHhhcccCc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRR-G--DGVLGLDNFNDYYDPSLKKARQALLERS-GIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~-G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
|+|.|+||+|.||..++..|..+ + .++++++++. . ... ...+..... .+.+... .+ ....+.++++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~---~~G-~a~Dl~~~~~~~~v~~~-~~--~~~~~~~~~a-- 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-V---TPG-VAVDLSHIPTAVKIKGF-SG--EDATPALEGA-- 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-T---HHH-HHHHHHTSCSSEEEEEE-CS--SCCHHHHTTC--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-C---chh-HHHHhhCCCCCceEEEe-cC--CCcHHHhCCC--
Confidence 58999999999999999999875 5 5888988843 1 111 111211111 1222110 01 1124456666
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
|+||-.||.. +.+-.+..+.++.|......+.+.+.+..+...++++|-
T Consensus 71 Divii~ag~~--rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 71 DVVLISAGVA--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp SEEEECCSCS--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CEEEEeCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 9999999863 233345678999999999999999998887667777763
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0016 Score=61.05 Aligned_cols=116 Identities=17% Similarity=0.102 Sum_probs=75.7
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
|+|.|+|+ |+||+.++..|+.++ .++.++|.+........-....... .......... .|. +.+++. |
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~--~d~----~~~~~a--D 71 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADY----SLLKGS--E 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEE--SCG----GGGTTC--S
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecC--CCH----HHhCCC--C
Confidence 68999995 999999999998887 4799998732211000000000000 1112222222 122 246666 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
+||-.||. .+.+-.+..+.++.|..-...+.+.+.++.+...++.+|-
T Consensus 72 vVvitAG~--prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 72 IIVVTAGL--ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EEEECCCC--CCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEEEecCC--CCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 99999996 3334456678999999999999999999988767777764
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00045 Score=67.22 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=65.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+.+|||+|+ |.||..+++.+...|++|++++++.+ ......+ .-+... ..|..+.+.+.++.. .+|+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~-----~~~~~~~---~lGa~~-v~~~~~~~~~~~~~~--~~D~ 254 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPS-----KKEEALK---NFGADS-FLVSRDQEQMQAAAG--TLDG 254 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGG-----GHHHHHH---TSCCSE-EEETTCHHHHHHTTT--CEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHH---hcCCce-EEeccCHHHHHHhhC--CCCE
Confidence 6789999996 99999999999999999999998332 1111111 112222 246677777777665 4599
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSS 227 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~ 227 (439)
||+++|.... ....++.++..| ++|.+++.
T Consensus 255 vid~~g~~~~-----------------~~~~~~~l~~~G---~iv~~g~~ 284 (366)
T 1yqd_A 255 IIDTVSAVHP-----------------LLPLFGLLKSHG---KLILVGAP 284 (366)
T ss_dssp EEECCSSCCC-----------------SHHHHHHEEEEE---EEEECCCC
T ss_pred EEECCCcHHH-----------------HHHHHHHHhcCC---EEEEEccC
Confidence 9999985210 123445555444 89988763
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00053 Score=68.64 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..|++|||+||+|.||..+++.+...|++|+++++
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~ 253 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS 253 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 46789999999999999999999999999999987
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00055 Score=65.98 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=50.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-HHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-MALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~ 175 (439)
..+.+|||+||+|.||..+++.+...|++|++..+ ..+ .+....-+...+. +-.+ .+.+.+......+
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~~~-------~~~---~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~ 217 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFATAR-------GSD---LEYVRDLGATPID-ASREPEDYAAEHTAGQGF 217 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-------HHH---HHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCE
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeC-------HHH---HHHHHHcCCCEec-cCCCHHHHHHHHhcCCCc
Confidence 35789999999999999999999999999999943 111 1122222344322 2222 2334444444467
Q ss_pred cEEEEccc
Q 013602 176 THVMHLAA 183 (439)
Q Consensus 176 d~Vi~~Ag 183 (439)
|+||+++|
T Consensus 218 D~vid~~g 225 (343)
T 3gaz_A 218 DLVYDTLG 225 (343)
T ss_dssp EEEEESSC
T ss_pred eEEEECCC
Confidence 99999997
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00088 Score=64.21 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=72.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHh--hh-cCCeEEEEcccCCHHHHHHhhcccC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQAL--LE-RSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~-~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
.++|.|+|| |.+|..++..|+..|+ +|++.+++.+..+.......... .. ..++.. . +| ++++++++
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t---~d---~~ea~~~a- 79 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-E---YS---YEAALTGA- 79 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-E---CS---HHHHHTTC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-e---CC---HHHHhCCC-
Confidence 468999998 9999999999999998 99999986542222111111110 11 111221 1 23 34467777
Q ss_pred ccEEEEcccccCcccccc-----ChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 175 FTHVMHLAAQAGVRYAMQ-----NPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~-----~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||..+|...- ... +..+....|..-...+.+.+.+..+...+|.+|
T Consensus 80 -DiVi~a~g~p~~--~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 80 -DCVIVTAGLTKV--PGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp -SEEEECCSCSSC--TTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred -CEEEEccCCCCC--CCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 999999975321 111 344667788888889999988887553555443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00044 Score=66.52 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=61.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 173 (439)
..+++|||+|+ |+||..+++.+...|++|++++++. . +.+....-+... .+|..+.+ .+.++..
T Consensus 163 ~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~-----~----~~~~~~~lGa~~-~~d~~~~~~~~~~~~~~~-- 229 (339)
T 1rjw_A 163 KPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGD-----E----KLELAKELGADL-VVNPLKEDAAKFMKEKVG-- 229 (339)
T ss_dssp CTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCH-----H----HHHHHHHTTCSE-EECTTTSCHHHHHHHHHS--
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCH-----H----HHHHHHHCCCCE-EecCCCccHHHHHHHHhC--
Confidence 35789999999 8899999999999999999999722 1 111111223322 24665432 3333332
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
.+|+||+++|... .....++.++..| ++|.+++
T Consensus 230 ~~d~vid~~g~~~-----------------~~~~~~~~l~~~G---~~v~~g~ 262 (339)
T 1rjw_A 230 GVHAAVVTAVSKP-----------------AFQSAYNSIRRGG---ACVLVGL 262 (339)
T ss_dssp SEEEEEESSCCHH-----------------HHHHHHHHEEEEE---EEEECCC
T ss_pred CCCEEEECCCCHH-----------------HHHHHHHHhhcCC---EEEEecc
Confidence 5699999997410 1234455555544 8888775
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0013 Score=62.89 Aligned_cols=112 Identities=19% Similarity=0.122 Sum_probs=74.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhc----CCeEEEEcccCCHHHHHHhhc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLER----SGIFIVEGDINDMALLKKLFD 171 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~~~~~~~ 171 (439)
+.++|.|+|| |.+|..++..|+..+. +|.+++++.++ ......+.... ..+.+.. | + .++++
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~----~~g~~~dl~~~~~~~~~~~i~~-~--~----~~a~~ 75 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDK----TKGDAIDLSNALPFTSPKKIYS-A--E----YSDAK 75 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHH----HHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchH----hHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhC
Confidence 4478999998 9999999999998875 89999983211 11111111111 2333332 2 2 44577
Q ss_pred ccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 172 VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+. |+||..+|... ..-....+.+..|+.....+.+.+.+..+...+|++|
T Consensus 76 ~a--DvVii~ag~~~--k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 76 DA--DLVVITAGAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp GC--SEEEECCCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CC--CEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 77 99999998632 2223345678889999999999999888776777775
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00083 Score=64.79 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=51.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHH---HHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMAL---LKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---~~~~~~~ 172 (439)
..+++|||+||+|+||..+++.+... |++|++++++.+ .....+.. +.. ...|..+.+. +.++...
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~------~~~~~~~~---g~~-~~~~~~~~~~~~~~~~~~~~ 238 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE------AVEAAKRA---GAD-YVINASMQDPLAEIRRITES 238 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH------HHHHHHHH---TCS-EEEETTTSCHHHHHHHHTTT
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHH------HHHHHHHh---CCC-EEecCCCccHHHHHHHHhcC
Confidence 36789999999999999999999999 999999997221 11111111 221 1235555433 4444431
Q ss_pred cCccEEEEcccc
Q 013602 173 VSFTHVMHLAAQ 184 (439)
Q Consensus 173 ~~~d~Vi~~Ag~ 184 (439)
-.+|+||+++|.
T Consensus 239 ~~~d~vi~~~g~ 250 (347)
T 1jvb_A 239 KGVDAVIDLNNS 250 (347)
T ss_dssp SCEEEEEESCCC
T ss_pred CCceEEEECCCC
Confidence 257999999984
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00066 Score=65.53 Aligned_cols=77 Identities=9% Similarity=-0.024 Sum_probs=50.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~~ 174 (439)
.+++|+|+||+|.||..+++.+...|++|++.+++.++ . ...... +... ..|..+.+ .+.++..+..
T Consensus 164 g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~-----~-~~~~~~---Ga~~-~~~~~~~~~~~~v~~~~~~~g 233 (349)
T 3pi7_A 164 GEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQ-----I-ALLKDI---GAAH-VLNEKAPDFEATLREVMKAEQ 233 (349)
T ss_dssp CCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGG-----H-HHHHHH---TCSE-EEETTSTTHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH-----H-HHHHHc---CCCE-EEECCcHHHHHHHHHHhcCCC
Confidence 34799999999999999999999999999999984321 1 111112 2211 13444433 3444443335
Q ss_pred ccEEEEcccc
Q 013602 175 FTHVMHLAAQ 184 (439)
Q Consensus 175 ~d~Vi~~Ag~ 184 (439)
+|+||+++|.
T Consensus 234 ~D~vid~~g~ 243 (349)
T 3pi7_A 234 PRIFLDAVTG 243 (349)
T ss_dssp CCEEEESSCH
T ss_pred CcEEEECCCC
Confidence 7999999974
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00076 Score=63.61 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=59.5
Q ss_pred CCCCE-EEEE-CCC-----------------ChHHHHHHHHHHhCCCeEEEEECCCCCCChhH---HHHHHHhh-----h
Q 013602 97 RNGIS-VLVT-GAA-----------------GFVGTHVSAALKRRGDGVLGLDNFNDYYDPSL---KKARQALL-----E 149 (439)
Q Consensus 97 ~~~~~-VlIt-Gat-----------------G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~-----~ 149 (439)
..|++ |||| ||| |-.|.++|+.++++|++|+.+.+..+...... .....+.+ .
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~~ 113 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPA 113 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC-
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCcCcchhccCccchhhhhcccccc
Confidence 56777 9999 555 77999999999999999999998543221110 00000100 1
Q ss_pred cCCeEEEEcccCCHHHHHHhhcc----------------------------------c-CccEEEEcccccCcc
Q 013602 150 RSGIFIVEGDINDMALLKKLFDV----------------------------------V-SFTHVMHLAAQAGVR 188 (439)
Q Consensus 150 ~~~v~~~~~Dl~d~~~~~~~~~~----------------------------------~-~~d~Vi~~Ag~~~~~ 188 (439)
..++..+.+|+...+.+.+++.. . ..|++|++|++..+.
T Consensus 114 ~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVsDf~ 187 (313)
T 1p9o_A 114 LSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFY 187 (313)
T ss_dssp CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCSEE
T ss_pred ccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchhhcc
Confidence 24566777777776655554421 1 359999999997654
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00078 Score=67.61 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..|.+|||+||+|.||...++.+...|++|+++++
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~ 261 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVS 261 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 35789999999999999999999999999999987
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00035 Score=67.92 Aligned_cols=76 Identities=16% Similarity=0.094 Sum_probs=52.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+++|+|+|+ |.+|..+++.|...|++|++++|+.+ ..+...+.. ...+.. +..+.+.+.+.+.++ |
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~-----r~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~--D 232 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVE-----RLSYLETLF-GSRVEL---LYSNSAEIETAVAEA--D 232 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHH-GGGSEE---EECCHHHHHHHHHTC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHH-----HHHHHHHhh-CceeEe---eeCCHHHHHHHHcCC--C
Confidence 34589999998 99999999999999999999998221 111111111 112222 223456677777766 9
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+|||+++.
T Consensus 233 vVI~~~~~ 240 (361)
T 1pjc_A 233 LLIGAVLV 240 (361)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999975
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0012 Score=62.92 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=71.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhc----CCeEEEEcccCCHHHHHHhhcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLER----SGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
.++|.|+|| |.+|..++..|+..+. +|.+++++.++ ......+.... ..+.+.. | + .+++++
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~----~~g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~ 72 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDR----TKGDALDLEDAQAFTAPKKIYS-G--E----YSDCKD 72 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH----HHHHHHHHHGGGGGSCCCEEEE-C--C----GGGGTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchH----HHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCC
Confidence 368999998 9999999999998875 89999983221 11111111111 2333332 2 2 445777
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+ |+||..||... ..-....+.+..|......+.+.+.+..+...+|++|
T Consensus 73 a--DvVii~ag~~~--~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 121 (318)
T 1ez4_A 73 A--DLVVITAGAPQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (318)
T ss_dssp C--SEEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred C--CEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 7 99999998632 1112233567889989999999999988776777775
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00074 Score=65.17 Aligned_cols=99 Identities=18% Similarity=0.130 Sum_probs=61.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhccc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVV 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 173 (439)
.+.+|||+|+ |.||..+++.+...|+ +|++++++. . +....+.. +... ..|..+.+ .+.++..+.
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~-----~-~~~~~~~~---Ga~~-~~~~~~~~~~~~v~~~~~g~ 235 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSD-----F-RRELAKKV---GADY-VINPFEEDVVKEVMDITDGN 235 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCH-----H-HHHHHHHH---TCSE-EECTTTSCHHHHHHHHTTTS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH-----H-HHHHHHHh---CCCE-EECCCCcCHHHHHHHHcCCC
Confidence 5679999999 9999999999999999 999999821 1 11111111 2221 13544433 344443333
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSS 227 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~ 227 (439)
.+|+||+++|... .....++.++..| ++|.+++.
T Consensus 236 g~D~vid~~g~~~-----------------~~~~~~~~l~~~G---~iv~~g~~ 269 (348)
T 2d8a_A 236 GVDVFLEFSGAPK-----------------ALEQGLQAVTPAG---RVSLLGLY 269 (348)
T ss_dssp CEEEEEECSCCHH-----------------HHHHHHHHEEEEE---EEEECCCC
T ss_pred CCCEEEECCCCHH-----------------HHHHHHHHHhcCC---EEEEEccC
Confidence 5799999997410 1234455555544 88888753
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0033 Score=60.81 Aligned_cols=176 Identities=12% Similarity=0.052 Sum_probs=99.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC--e---EEEEECCCCCCChhHHHHHHHhhhc--CCeEEEEcccCCHHHHHHhh
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD--G---VLGLDNFNDYYDPSLKKARQALLER--SGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~--~---V~~~~r~~~~~~~~~~~~~~~~~~~--~~v~~~~~Dl~d~~~~~~~~ 170 (439)
..++|.|+||+|.||.+++-.|+..+. + |.+.+.+.+.......-...+.... +-..-+. +.+ .-.+.+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~--i~~--~~y~~~ 106 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVS--IGI--DPYEVF 106 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEE--EES--CHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcE--Eec--CCHHHh
Confidence 346899999999999999999998874 2 6665543322111112112222111 1111122 222 135667
Q ss_pred cccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCc---ccCCCCCCCCCCCCCCCC
Q 013602 171 DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA-NPQPAIVWASSSS---VYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~~V~~SS~~---v~g~~~~~~~~e~~~~~~ 246 (439)
++. |+||-.||. .+..-.+..+.++.|..-...+.+.+.+. ++...|+.+|--. .|-. +.....+ .
T Consensus 107 ~da--DvVVitag~--prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia-----~k~sg~~-~ 176 (375)
T 7mdh_A 107 EDV--DWALLIGAK--PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC-----LKNAPDI-P 176 (375)
T ss_dssp TTC--SEEEECCCC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH-----HHTCTTS-C
T ss_pred CCC--CEEEEcCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH-----HHHcCCC-C
Confidence 777 999999986 33333456789999999999999999885 5555777777410 0000 0000000 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCC
Q 013602 247 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR 287 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~ 287 (439)
+...-+.+-+-.-++-..++++.|+....++--.|.|..++
T Consensus 177 ~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd 217 (375)
T 7mdh_A 177 AKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST 217 (375)
T ss_dssp GGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST
T ss_pred ccEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCCC
Confidence 11111223344445555566667876555654467787654
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0013 Score=63.36 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=49.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC--HHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND--MALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~~~~~ 175 (439)
.+.+|||+||+|.||..+++.+...|++|++++++.+ +......+ +...+ .|..+ .+.+.++ ..-.+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~------~~~~~~~l---Ga~~v-i~~~~~~~~~~~~~-~~~g~ 218 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNE------TIEWTKKM---GADIV-LNHKESLLNQFKTQ-GIELV 218 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHH------HHHHHHHH---TCSEE-ECTTSCHHHHHHHH-TCCCE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH------HHHHHHhc---CCcEE-EECCccHHHHHHHh-CCCCc
Confidence 5789999999999999999999999999999998221 11111112 22211 23322 2334444 33357
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||+++|.
T Consensus 219 Dvv~d~~g~ 227 (346)
T 3fbg_A 219 DYVFCTFNT 227 (346)
T ss_dssp EEEEESSCH
T ss_pred cEEEECCCc
Confidence 999999874
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0015 Score=61.91 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=54.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHH-hhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQA-LLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
..+++++|+|+ |++|+.++..|++.|. +|++++|+.+. ....+...+ .....+......++.+.+.+.+.+.++
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~--~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~- 221 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDF--FEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASA- 221 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTH--HHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHC-
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCch--HHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCc-
Confidence 57899999996 9999999999999998 89999994221 011111111 111223444445666655556666666
Q ss_pred ccEEEEcccc
Q 013602 175 FTHVMHLAAQ 184 (439)
Q Consensus 175 ~d~Vi~~Ag~ 184 (439)
|+|||+...
T Consensus 222 -DiIINaTp~ 230 (312)
T 3t4e_A 222 -DILTNGTKV 230 (312)
T ss_dssp -SEEEECSST
T ss_pred -eEEEECCcC
Confidence 999998754
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0003 Score=62.69 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=30.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
|+|+|+||+|.+|..+++.|++.|++|++.+|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 479999999999999999999999999999983
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0023 Score=60.60 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=74.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhc----CCeEEEEcccCCHHHHHHhhccc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLER----SGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
|+|.|+|+ |.+|..++..|+..+ .+|.+++++.++ ......+.... ..+.+.. | + .++++++
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k----~~g~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~a 68 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKL----AQAHAEDILHATPFAHPVWVWA-G--S----YGDLEGA 68 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHH----HHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGTTE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhH----HHHHHHHHHHhHhhcCCeEEEE-C--C----HHHhCCC
Confidence 57999998 999999999999887 689999984211 11111111111 2333332 2 2 3457777
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||..||... .......+.+..|......+.+.+.+..+...+|++|
T Consensus 69 --D~Vii~ag~~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 69 --RAVVLAAGVAQ--RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp --EEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred --CEEEECCCCCC--CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 99999998632 2223345678889999999999999888776777775
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00015 Score=68.12 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
+.+|+|+|||+ |++|+.++..|+++| +|++.+|+
T Consensus 126 l~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~ 159 (287)
T 1nvt_A 126 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRT 159 (287)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSS
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECC
Confidence 57899999998 599999999999999 99999983
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.001 Score=63.11 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=68.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhh-----cCCeEEEEcccCCHHHHHHhhccc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLE-----RSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
++|.|+|+ |.+|..++..|+..|+ +|++++++.++.+ ....+... .....+... +| . ++++++
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~----g~~~dl~~~~~~~~~~~~i~~t--~d---~-~a~~~a 71 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQ----GKALDLYEASPIEGFDVRVTGT--NN---Y-ADTANS 71 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHH----HHHHHHHTTHHHHTCCCCEEEE--SC---G-GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHH----HHHHhHHHhHhhcCCCeEEEEC--CC---H-HHHCCC
Confidence 68999998 9999999999999997 8888888543221 11111111 112222110 22 2 346677
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||.++|... .......+....|......+.+.+.+..+...+|++|
T Consensus 72 --D~Vi~a~g~p~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 72 --DVIVVTSGAPR--KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp --SEEEECCCC----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred --CEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 99999998632 1112234567888888899999999887653444443
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0015 Score=59.94 Aligned_cols=110 Identities=23% Similarity=0.162 Sum_probs=67.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------------CChhHHHHHHHhh-hcC--CeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------------YDPSLKKARQALL-ERS--GIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~~~~~~~~~~-~~~--~v~~~~ 157 (439)
+.+++|+|.|+ |++|+++++.|++.|. +|++++++.-. +............ -.+ .+..+.
T Consensus 29 l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 107 (249)
T 1jw9_B 29 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN 107 (249)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence 34579999995 9999999999999997 88888886510 0011111111111 113 345555
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV 229 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v 229 (439)
.+++ .+.+.++++++ |+||.+... ++ .-..+.++|++.+. .+|+.+..+.
T Consensus 108 ~~~~-~~~~~~~~~~~--DvVi~~~d~---------~~--------~~~~l~~~~~~~~~--p~i~~~~~g~ 157 (249)
T 1jw9_B 108 ALLD-DAELAALIAEH--DLVLDCTDN---------VA--------VRNQLNAGCFAAKV--PLVSGAAIRM 157 (249)
T ss_dssp SCCC-HHHHHHHHHTS--SEEEECCSS---------HH--------HHHHHHHHHHHHTC--CEEEEEEEBT
T ss_pred ccCC-HhHHHHHHhCC--CEEEEeCCC---------HH--------HHHHHHHHHHHcCC--CEEEeeeccc
Confidence 5565 45667777777 999987632 11 12356667777774 6777655443
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0012 Score=63.34 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=67.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~ 177 (439)
.++|+|.|+ |.+|+.+++.|.++|+ |++++++.+ ..+ ....++.++.+|.+|++.++++ ++++ |.
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~---------~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a--~~ 180 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENV---------RKK-VLRSGANFVHGDPTRVSDLEKANVRGA--RA 180 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGG---------HHH-HHHTTCEEEESCTTSHHHHHHTCSTTE--EE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChh---------hhh-HHhCCcEEEEeCCCCHHHHHhcChhhc--cE
Confidence 468999996 9999999999999999 999987332 112 2346899999999999999987 6666 88
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVW 223 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~ 223 (439)
||-+.+. + ..| ..+...+++.++..++|.
T Consensus 181 vi~~~~~--------d-----~~n----~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 181 VIVDLES--------D-----SET----IHCILGIRKIDESVRIIA 209 (336)
T ss_dssp EEECCSS--------H-----HHH----HHHHHHHHTTCTTSEEEE
T ss_pred EEEcCCc--------c-----HHH----HHHHHHHHHHCCCCeEEE
Confidence 8865431 1 123 345566777776435553
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00056 Score=64.58 Aligned_cols=74 Identities=23% Similarity=0.204 Sum_probs=49.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-HHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-MALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~ 175 (439)
..+.+|||+||+|.+|..+++.+...|++|++++++.++.+ ..... +... ..|..+ .+ +.+.+.. +
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~------~~~~~---ga~~-~~~~~~~~~-~~~~~~~--~ 190 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA------LPLAL---GAEE-AATYAEVPE-RAKAWGG--L 190 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH------HHHHT---TCSE-EEEGGGHHH-HHHHTTS--E
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH------HHHhc---CCCE-EEECCcchh-HHHHhcC--c
Confidence 35789999999999999999999999999999998443211 11111 2222 245555 43 3333344 5
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||+ +|.
T Consensus 191 d~vid-~g~ 198 (302)
T 1iz0_A 191 DLVLE-VRG 198 (302)
T ss_dssp EEEEE-CSC
T ss_pred eEEEE-CCH
Confidence 99999 874
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0023 Score=60.25 Aligned_cols=77 Identities=10% Similarity=0.001 Sum_probs=51.8
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
...+++|+|+|+ |++|+.++..|++.|+ +|++.+|+.+ ..+...+.... ... ++.+.+++.+.+.++
T Consensus 138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~-----ka~~la~~~~~-~~~----~~~~~~~~~~~~~~a- 205 (297)
T 2egg_A 138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVE-----KAERLVREGDE-RRS----AYFSLAEAETRLAEY- 205 (297)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHH-----HHHHHHHHSCS-SSC----CEECHHHHHHTGGGC-
T ss_pred CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHhhh-ccC----ceeeHHHHHhhhccC-
Confidence 357899999996 8999999999999998 9999999321 11111111111 100 222345677777777
Q ss_pred ccEEEEccccc
Q 013602 175 FTHVMHLAAQA 185 (439)
Q Consensus 175 ~d~Vi~~Ag~~ 185 (439)
|+|||+.+..
T Consensus 206 -DivIn~t~~~ 215 (297)
T 2egg_A 206 -DIIINTTSVG 215 (297)
T ss_dssp -SEEEECSCTT
T ss_pred -CEEEECCCCC
Confidence 9999999753
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0061 Score=58.75 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=49.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC----HHHHHHhhc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND----MALLKKLFD- 171 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~~~~~~~- 171 (439)
..+.+|||+|+ |.+|..+++.+...|++|++++++. .+.+....-+... ..|..+ .+.+.+...
T Consensus 167 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~---------~~~~~~~~lGa~~-~~~~~~~~~~~~~i~~~~~~ 235 (352)
T 1e3j_A 167 QLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSP---------RRLEVAKNCGADV-TLVVDPAKEEESSIIERIRS 235 (352)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHTTCSE-EEECCTTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCH---------HHHHHHHHhCCCE-EEcCcccccHHHHHHHHhcc
Confidence 35789999997 9999999999999999999998721 1111111222221 124332 345555543
Q ss_pred --ccCccEEEEcccc
Q 013602 172 --VVSFTHVMHLAAQ 184 (439)
Q Consensus 172 --~~~~d~Vi~~Ag~ 184 (439)
...+|+||+++|.
T Consensus 236 ~~g~g~D~vid~~g~ 250 (352)
T 1e3j_A 236 AIGDLPNVTIDCSGN 250 (352)
T ss_dssp HSSSCCSEEEECSCC
T ss_pred ccCCCCCEEEECCCC
Confidence 3356999999974
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0024 Score=60.81 Aligned_cols=116 Identities=14% Similarity=0.031 Sum_probs=74.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEE-EcccCCHHHHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIV-EGDINDMALLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~~~~~~~~~~ 174 (439)
..++|.|+|+ |.+|..++..|+..|. +|++++++.+...................... ..|.. + ++++
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~------~-~~da- 90 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS------V-SAGS- 90 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC------S-CSSC-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH------H-hCCC-
Confidence 4579999998 9999999999999996 89999983321111000000000001111222 22321 2 5666
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||-+||.. +..-.+..+.+..|..-...+.+.+.+..+...++++|
T Consensus 91 -DiVIitaG~p--~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 91 -KLVVITAGAR--QQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp -SEEEECCSCC--CCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred -CEEEEeCCCC--CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 9999999863 22233445778889999999999999887776777777
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00089 Score=65.07 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC--HHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND--MALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~~~~ 174 (439)
..+++|||+|+ |.||..+++.+...|++|++++++.. . ..+. +....-+...+ | .+ .+.+.+ .. ..
T Consensus 179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~--~-~~~~---~~~~~~ga~~v--~-~~~~~~~~~~-~~-~~ 246 (366)
T 2cdc_A 179 LNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREP--T-EVEQ---TVIEETKTNYY--N-SSNGYDKLKD-SV-GK 246 (366)
T ss_dssp STTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCC--C-HHHH---HHHHHHTCEEE--E-CTTCSHHHHH-HH-CC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCcc--c-hHHH---HHHHHhCCcee--c-hHHHHHHHHH-hC-CC
Confidence 45889999999 99999999999999999999998431 0 0111 11112234444 5 44 223333 22 35
Q ss_pred ccEEEEcccc
Q 013602 175 FTHVMHLAAQ 184 (439)
Q Consensus 175 ~d~Vi~~Ag~ 184 (439)
+|+||+++|.
T Consensus 247 ~d~vid~~g~ 256 (366)
T 2cdc_A 247 FDVIIDATGA 256 (366)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEECCCC
Confidence 6999999985
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0017 Score=61.38 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=65.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhc----CCeEEEEcccCCHHHHHHhhccc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLER----SGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
|+|.|+|+ |.+|..++..|+..|+ +|++++++.+. ......+.... ..+.+.. .+. ++++++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~----~~~~~~~l~~~~~~~~~~~i~~---~~~----~a~~~a 68 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDR----AQAEAEDIAHAAPVSHGTRVWH---GGH----SELADA 68 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHH----HHHHHHHHTTSCCTTSCCEEEE---ECG----GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHH----HHHHHHhhhhhhhhcCCeEEEE---CCH----HHhCCC
Confidence 57999998 9999999999999998 99999984211 11111111111 1222221 232 356666
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||.+++.... ......+.+..|......+++.+.+..+...+|++|
T Consensus 69 --DvVIi~~~~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 69 --QVVILTAGANQK--PGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp --SEEEECC--------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred --CEEEEcCCCCCC--CCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 999999975321 112233567788888889999888876554555554
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00094 Score=65.23 Aligned_cols=76 Identities=18% Similarity=0.086 Sum_probs=53.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+++|+|+|+ |.||..+++.+...|++|++.+|+. ...+...+... ..+ ..+..+.+.+.++++++ |
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~-----~~l~~~~~~~g-~~~---~~~~~~~~~l~~~l~~a--D 233 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINI-----DKLRQLDAEFC-GRI---HTRYSSAYELEGAVKRA--D 233 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHTT-TSS---EEEECCHHHHHHHHHHC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCH-----HHHHHHHHhcC-Cee---EeccCCHHHHHHHHcCC--C
Confidence 57899999998 9999999999999999999999822 11111111111 122 23445566788888877 9
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+||++++.
T Consensus 234 vVi~~~~~ 241 (377)
T 2vhw_A 234 LVIGAVLV 241 (377)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99998875
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0043 Score=58.96 Aligned_cols=112 Identities=22% Similarity=0.161 Sum_probs=71.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhc-----CCeEEEEcccCCHHHHHHhh
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLER-----SGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~-----~~v~~~~~Dl~d~~~~~~~~ 170 (439)
..++|.|+|+ |.+|..++..|+..|. +|++++++.+. ......+.... ..+.+.. | + .+++
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~----~~~~~~dl~~~~~~~~~~~~i~~-~--~----~~al 72 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESK----AIGDAMDFNHGKVFAPKPVDIWH-G--D----YDDC 72 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH----HHHHHHHHHHHTTSSSSCCEEEE-C--C----GGGT
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcch----HHHHHhhHHHHhhhcCCCeEEEc-C--c----HHHh
Confidence 4479999998 9999999999988774 89999984321 11111111111 1333332 1 2 2456
Q ss_pred cccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 171 DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+++ |+||.+++...... ....+.+..|..-...+.+.+.+..+...++++|
T Consensus 73 ~~a--DvViia~~~~~~~g--~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 73 RDA--DLVVICAGANQKPG--ETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp TTC--SEEEECCSCCCCTT--TCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCC--CEEEEcCCCCCCCC--CCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 777 99999998743221 2234567778888888888888887654566554
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0024 Score=62.22 Aligned_cols=77 Identities=22% Similarity=0.217 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+.+|||+||+|.||..+++.+...|++|++.++ .+ . ....+.+ +... ..|..+.+..+++.+...+|
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~----~--~~~~~~l---Ga~~-v~~~~~~~~~~~~~~~~g~D 250 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QD----A--SELVRKL---GADD-VIDYKSGSVEEQLKSLKPFD 250 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GG----G--HHHHHHT---TCSE-EEETTSSCHHHHHHTSCCBS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hH----H--HHHHHHc---CCCE-EEECCchHHHHHHhhcCCCC
Confidence 35789999999999999999999999999999885 11 1 1111211 2221 13555544334443333569
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+||+++|.
T Consensus 251 ~vid~~g~ 258 (375)
T 2vn8_A 251 FILDNVGG 258 (375)
T ss_dssp EEEESSCT
T ss_pred EEEECCCC
Confidence 99999984
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0023 Score=59.85 Aligned_cols=78 Identities=21% Similarity=0.132 Sum_probs=51.3
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhh--cCCeEEEEcccCCHHHHHHhhcc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLE--RSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
...+++|+|+|+ |++|+.++..|++.|. +|++++|+.++ .+...+... ...+.+...++ +++.+.+++
T Consensus 124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~-----a~~la~~~~~~~~~~~i~~~~~---~~l~~~l~~ 194 (283)
T 3jyo_A 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSR-----AQALADVINNAVGREAVVGVDA---RGIEDVIAA 194 (283)
T ss_dssp TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHH-----HHHHHHHHHHHHTSCCEEEECS---TTHHHHHHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHH-----HHHHHHHHHhhcCCceEEEcCH---HHHHHHHhc
Confidence 367899999997 9999999999999998 79999994321 111111111 12233333343 334556666
Q ss_pred cCccEEEEcccc
Q 013602 173 VSFTHVMHLAAQ 184 (439)
Q Consensus 173 ~~~d~Vi~~Ag~ 184 (439)
+ |+|||+...
T Consensus 195 ~--DiVInaTp~ 204 (283)
T 3jyo_A 195 A--DGVVNATPM 204 (283)
T ss_dssp S--SEEEECSST
T ss_pred C--CEEEECCCC
Confidence 6 999998754
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.011 Score=57.29 Aligned_cols=80 Identities=16% Similarity=0.069 Sum_probs=52.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCe-EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHH----hhc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKK----LFD 171 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~----~~~ 171 (439)
..|.+|||+|+ |.+|...++.+...|++ |++.+++. .+....+.+ ...+..+..|-.+.+.+.+ +..
T Consensus 178 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~------~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 178 RLGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDE------GRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCH------HHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH------HHHHHHHHh-chhcccccccccchHHHHHHHHHHhC
Confidence 35789999998 99999999999999997 88888722 122222223 3344445555444444433 333
Q ss_pred ccCccEEEEcccc
Q 013602 172 VVSFTHVMHLAAQ 184 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~ 184 (439)
+..+|+||+++|.
T Consensus 250 g~g~Dvvid~~g~ 262 (363)
T 3m6i_A 250 GIEPAVALECTGV 262 (363)
T ss_dssp SCCCSEEEECSCC
T ss_pred CCCCCEEEECCCC
Confidence 3467999999874
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0012 Score=63.66 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=49.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhC--CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-HHHHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRR--GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-MALLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~ 174 (439)
.+.+|||+|+ |.||..+++.+... |++|++++++. . +....+.+ +...+ .|..+ .+.+.++-....
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~-----~-~~~~~~~l---Ga~~v-i~~~~~~~~~~~~~~g~g 238 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSK-----K-HRDFALEL---GADYV-SEMKDAESLINKLTDGLG 238 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCH-----H-HHHHHHHH---TCSEE-ECHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCH-----H-HHHHHHHh---CCCEE-eccccchHHHHHhhcCCC
Confidence 5789999999 99999999999888 99999998722 1 11111112 22211 24444 344444443335
Q ss_pred ccEEEEcccc
Q 013602 175 FTHVMHLAAQ 184 (439)
Q Consensus 175 ~d~Vi~~Ag~ 184 (439)
+|+||+++|.
T Consensus 239 ~D~vid~~g~ 248 (344)
T 2h6e_A 239 ASIAIDLVGT 248 (344)
T ss_dssp EEEEEESSCC
T ss_pred ccEEEECCCC
Confidence 7999999874
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0043 Score=60.10 Aligned_cols=101 Identities=22% Similarity=0.149 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-HHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-MALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~ 175 (439)
..+.+|||+| +|.||...++.+...|++|++++++. . +....+.+.. -.++.-+-.+ .+.+.++..+..+
T Consensus 188 ~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~-----~-~~~~~~~lGa--~~vi~~~~~~~~~~v~~~~~g~g~ 258 (363)
T 3uog_A 188 RAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSR-----E-KLDRAFALGA--DHGINRLEEDWVERVYALTGDRGA 258 (363)
T ss_dssp CTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCH-----H-HHHHHHHHTC--SEEEETTTSCHHHHHHHHHTTCCE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCc-----h-hHHHHHHcCC--CEEEcCCcccHHHHHHHHhCCCCc
Confidence 3578999999 89999999999999999999999822 1 1111122211 1222211112 2345555555567
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSS 227 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~ 227 (439)
|+||+++|... ....++.++..| ++|.++..
T Consensus 259 D~vid~~g~~~------------------~~~~~~~l~~~G---~iv~~G~~ 289 (363)
T 3uog_A 259 DHILEIAGGAG------------------LGQSLKAVAPDG---RISVIGVL 289 (363)
T ss_dssp EEEEEETTSSC------------------HHHHHHHEEEEE---EEEEECCC
T ss_pred eEEEECCChHH------------------HHHHHHHhhcCC---EEEEEecC
Confidence 99999998311 234455555544 88888753
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00083 Score=55.93 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=47.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+++|+|.|+ |.+|..+++.|.+.|++|++.+|+.+ ......+.. ++... +. +++.++++++ |+
T Consensus 20 ~~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~-----~~~~~a~~~---~~~~~--~~---~~~~~~~~~~--Di 83 (144)
T 3oj0_A 20 GGNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNID-----HVRAFAEKY---EYEYV--LI---NDIDSLIKNN--DV 83 (144)
T ss_dssp CCCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHH-----HHHHHHHHH---TCEEE--EC---SCHHHHHHTC--SE
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHH-----HHHHHHHHh---CCceE--ee---cCHHHHhcCC--CE
Confidence 3789999995 99999999999999999999998321 111111111 22222 22 2345556666 99
Q ss_pred EEEcccc
Q 013602 178 VMHLAAQ 184 (439)
Q Consensus 178 Vi~~Ag~ 184 (439)
||.+.+.
T Consensus 84 vi~at~~ 90 (144)
T 3oj0_A 84 IITATSS 90 (144)
T ss_dssp EEECSCC
T ss_pred EEEeCCC
Confidence 9998865
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.001 Score=64.21 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=59.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-----C-eEEEEECCCCCCChhHHHHHHHhhhc-CCeEEEEcccCCHHHHHHh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-----D-GVLGLDNFNDYYDPSLKKARQALLER-SGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-----~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~~~~~ 169 (439)
|.+++|.|.||||++|+.+++.|.+++ + +|+.+.+..+........ ...+.. ..+.+. |+ +.+.
T Consensus 7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~--~~~l~~~~~~~~~--~~-~~~~---- 77 (352)
T 2nqt_A 7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEH--HPHLTPLAHRVVE--PT-EAAV---- 77 (352)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGT--CTTCGGGTTCBCE--EC-CHHH----
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhh--cccccccceeeec--cC-CHHH----
Confidence 445799999999999999999999988 4 777776422211110000 000000 122222 22 2322
Q ss_pred hcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 013602 170 FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV 229 (439)
Q Consensus 170 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v 229 (439)
++++ |+||.+++... +..+++.+ +.|. ++|-+|+..-
T Consensus 78 ~~~~--DvVf~alg~~~------------------s~~~~~~~-~~G~--~vIDlSa~~R 114 (352)
T 2nqt_A 78 LGGH--DAVFLALPHGH------------------SAVLAQQL-SPET--LIIDCGADFR 114 (352)
T ss_dssp HTTC--SEEEECCTTSC------------------CHHHHHHS-CTTS--EEEECSSTTT
T ss_pred hcCC--CEEEECCCCcc------------------hHHHHHHH-hCCC--EEEEECCCcc
Confidence 3455 99999987532 34566666 6663 8999998653
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0032 Score=59.97 Aligned_cols=116 Identities=11% Similarity=0.120 Sum_probs=70.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
.++|.|+|| |.+|..++..|+..|+ +|++.+++.+..+........... ......+... +| . ++++++ |
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t--~d---~-~al~~a--D 74 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS--NT---Y-DDLAGA--D 74 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE--CC---G-GGGTTC--S
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC--CC---H-HHhCCC--C
Confidence 468999998 9999999999999998 999998865422111111000000 0111111110 22 2 456777 9
Q ss_pred EEEEcccccCccccccC-----hhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 177 HVMHLAAQAGVRYAMQN-----PNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~-----~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+||.++|...- .... ..+....|..-...+.+.+.+..+...+|++|
T Consensus 75 ~Vi~a~g~p~k--~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 75 VVIVTAGFTKA--PGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp EEEECCSCSSC--TTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEEeCCCCCC--CCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999985321 1111 34567778888888888888776554666554
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0033 Score=59.58 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=71.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhC--CCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRR--GDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
|+|.|+|+ |.+|..++..|++. |++|++++++.+..+... ....... ......+.. .+|. ++ ++++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~-~~l~~~~~~~~~~~~i~~--t~d~---~~-l~~a-- 70 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKA-LDMYESGPVGLFDTKVTG--SNDY---AD-TANS-- 70 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHH-HHHHTTHHHHTCCCEEEE--ESCG---GG-GTTC--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHH-HhHHhhhhcccCCcEEEE--CCCH---HH-HCCC--
Confidence 57999998 99999999999985 799999999654221110 0000000 001111111 0232 22 5666
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||-+++.. ........+.+..|......+.+.+.+..+...+|.+|
T Consensus 71 DvViiav~~p--~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 71 DIVIITAGLP--RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp SEEEECCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred CEEEEeCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 9999998742 11122345778889888899999988887665777665
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0012 Score=67.49 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=28.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
+.+++++|||| |++|++++..|+++|++|++++|+
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~ 396 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRT 396 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECC
Confidence 56789999998 799999999999999999999993
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.003 Score=60.67 Aligned_cols=96 Identities=16% Similarity=0.128 Sum_probs=60.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhccc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVV 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 173 (439)
.+.+|||+|+ |.+|..+++.+...|+ +|++++++. .+.+....- .. ...|..+.+ .+.++. ..
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~---------~~~~~~~~l-a~-~v~~~~~~~~~~~~~~~~-~~ 230 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNP---------YRLAFARPY-AD-RLVNPLEEDLLEVVRRVT-GS 230 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCH---------HHHGGGTTT-CS-EEECTTTSCHHHHHHHHH-SS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH---------HHHHHHHHh-HH-hccCcCccCHHHHHHHhc-CC
Confidence 5679999999 9999999999999999 999999721 222222221 11 123544422 333333 33
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
.+|+||+++|... .....++.++..| ++|.++.
T Consensus 231 g~D~vid~~g~~~-----------------~~~~~~~~l~~~G---~iv~~g~ 263 (343)
T 2dq4_A 231 GVEVLLEFSGNEA-----------------AIHQGLMALIPGG---EARILGI 263 (343)
T ss_dssp CEEEEEECSCCHH-----------------HHHHHHHHEEEEE---EEEECCC
T ss_pred CCCEEEECCCCHH-----------------HHHHHHHHHhcCC---EEEEEec
Confidence 5799999987410 1234455555544 8888775
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0044 Score=59.18 Aligned_cols=114 Identities=14% Similarity=0.155 Sum_probs=70.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHh--hh-cCCeEEEEcccCCHHHHHHhhcccC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQAL--LE-RSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~-~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
.++|.|+|| |.+|..++..|+..|+ +|++.+++.+..+.......... .. ...+.. ..| . ++++++
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d------~-~al~~a- 83 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG-ENN------Y-EYLQNS- 83 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-ESC------G-GGGTTC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE-CCC------H-HHHCCC-
Confidence 368999997 9999999999999998 99999996543221111111110 00 112221 122 2 456677
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||-.+|... .......+....|..-...+.+.+.+..+...+|++|
T Consensus 84 -D~VI~avg~p~--k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 131 (328)
T 2hjr_A 84 -DVVIITAGVPR--KPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131 (328)
T ss_dssp -SEEEECCSCCC--CTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred -CEEEEcCCCCC--CCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999997532 1111223456778888888888888776554555554
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0018 Score=63.04 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=51.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+.+|||+|+ |.||..+++.+...|++|++++++.++ .+ ..+.+ +... ..|..+.+.++++.. .+|
T Consensus 193 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~-----~~-~a~~l---Ga~~-vi~~~~~~~~~~~~~--g~D 259 (369)
T 1uuf_A 193 GPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAK-----RE-AAKAL---GADE-VVNSRNADEMAAHLK--SFD 259 (369)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGG-----HH-HHHHH---TCSE-EEETTCHHHHHTTTT--CEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHH-----HH-HHHHc---CCcE-EeccccHHHHHHhhc--CCC
Confidence 35789999997 899999999999999999999973321 11 11112 2221 235666665555543 459
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+||+++|.
T Consensus 260 vvid~~g~ 267 (369)
T 1uuf_A 260 FILNTVAA 267 (369)
T ss_dssp EEEECCSS
T ss_pred EEEECCCC
Confidence 99999974
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0016 Score=60.49 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=28.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHh-CCCeEEEEEC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKR-RGDGVLGLDN 131 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~-~G~~V~~~~r 131 (439)
..++|.|+|++|.+|+.+++.+.+ .|++++++++
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d 38 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALE 38 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEEC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 447999999999999999998874 5788886654
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0037 Score=58.06 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
..+|+|+|+|+ |++|+.++..|++.|++|++.+|+
T Consensus 117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~ 151 (272)
T 1p77_A 117 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRT 151 (272)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECC
Confidence 57899999997 899999999999999999999993
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0044 Score=60.45 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=60.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC---CHH---HHHHhh
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN---DMA---LLKKLF 170 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~---d~~---~~~~~~ 170 (439)
.+.+|||+| +|.+|..+++.+...| .+|++++++. .+.+....-+...+ .|.. +.+ .+.++.
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~---------~~~~~~~~lGa~~v-i~~~~~~~~~~~~~v~~~~ 263 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSP---------NRLKLAEEIGADLT-LNRRETSVEERRKAIMDIT 263 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCH---------HHHHHHHHTTCSEE-EETTTSCHHHHHHHHHHHT
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCH---------HHHHHHHHcCCcEE-EeccccCcchHHHHHHHHh
Confidence 567999999 8999999999999999 6999999722 11222222233221 2433 222 233333
Q ss_pred cccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 171 DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
.+..+|+||+++|... .....++.++..| ++|.++.
T Consensus 264 ~g~g~Dvvid~~g~~~-----------------~~~~~~~~l~~~G---~iv~~G~ 299 (380)
T 1vj0_A 264 HGRGADFILEATGDSR-----------------ALLEGSELLRRGG---FYSVAGV 299 (380)
T ss_dssp TTSCEEEEEECSSCTT-----------------HHHHHHHHEEEEE---EEEECCC
T ss_pred CCCCCcEEEECCCCHH-----------------HHHHHHHHHhcCC---EEEEEec
Confidence 3335799999997411 1233455555544 8887764
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0086 Score=55.98 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=67.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCC--------------CCChhHHHHHH--Hhh-hcCCeEEEEc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFND--------------YYDPSLKKARQ--ALL-ERSGIFIVEG 158 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~--------------~~~~~~~~~~~--~~~-~~~~v~~~~~ 158 (439)
+...+|+|.| .|++|+++++.|+..|. +++++|.+.- -+......... ... ..-.++.+..
T Consensus 34 L~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~ 112 (292)
T 3h8v_A 34 IRTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY 112 (292)
T ss_dssp GGGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred HhCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence 4557999999 59999999999999995 7777776541 11111111111 111 1234566677
Q ss_pred ccCCHHHHHHhhcc---------cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 159 DINDMALLKKLFDV---------VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 159 Dl~d~~~~~~~~~~---------~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
++++.+.+.++++. ..+|+||++. +++. .-..+.++|.+.+. .+|+.+.
T Consensus 113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~---------Dn~~--------~R~~in~~c~~~~~--Pli~~gv 170 (292)
T 3h8v_A 113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCV---------DNFE--------ARMTINTACNELGQ--TWMESGV 170 (292)
T ss_dssp CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC---------SSHH--------HHHHHHHHHHHHTC--CEEEEEE
T ss_pred cCCcHHHHHHHhhhhcccccccCCCCCEEEECC---------cchh--------hhhHHHHHHHHhCC--CEEEeee
Confidence 78877777776521 2459999775 3222 22346677888774 5665543
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.011 Score=56.14 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=69.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHh---hh-cCCeEEEEcccCCHHHHHHhhccc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQAL---LE-RSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~-~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
|+|.|+|+ |.+|..++..|++.|+ +|++.+++.+. ........ .. .....+.. +|. +.++++
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~----~~~~~~~l~~~~~~~~~~~i~~---~d~----~~~~~a 68 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKR----AEGDALDLIHGTPFTRRANIYA---GDY----ADLKGS 68 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH----HHHHHHHHHHHGGGSCCCEEEE---CCG----GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHH----HHHHHHHHHhhhhhcCCcEEEe---CCH----HHhCCC
Confidence 57999997 9999999999999999 99999984321 11111110 00 01122221 232 345666
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||-+++... .......+....|......+++.+.+..+...+|.+|
T Consensus 69 --DvViiav~~~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 69 --DVVIVAAGVPQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp --SEEEECCCCCC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred --CEEEEccCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 99999987532 1112344677788888888988888776554566554
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0037 Score=60.54 Aligned_cols=77 Identities=23% Similarity=0.182 Sum_probs=50.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH--HHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM--ALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~--~~~~~~~~~~ 173 (439)
..+.+|||+|| |.+|...++.+... |++|++++++. .+.+....-+...+ .|..+. +.+.++-.+.
T Consensus 185 ~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~---------~~~~~~~~lGa~~v-i~~~~~~~~~v~~~~~g~ 253 (359)
T 1h2b_A 185 YPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKE---------EKLKLAERLGADHV-VDARRDPVKQVMELTRGR 253 (359)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSH---------HHHHHHHHTTCSEE-EETTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCH---------HHHHHHHHhCCCEE-EeccchHHHHHHHHhCCC
Confidence 35789999999 99999999998888 99999999721 12222222233221 355443 3444444333
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|+||+++|.
T Consensus 254 g~Dvvid~~G~ 264 (359)
T 1h2b_A 254 GVNVAMDFVGS 264 (359)
T ss_dssp CEEEEEESSCC
T ss_pred CCcEEEECCCC
Confidence 57999999974
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0088 Score=57.92 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=47.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHh-CCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC--HHHHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKR-RGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND--MALLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~~~~ 174 (439)
.+.+|||+||+|.+|...++.+.. .|.+|++++++. .+.+....-+...+ .|..+ .+.+.++ ..-.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~---------~~~~~~~~lGad~v-i~~~~~~~~~v~~~-~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRP---------ETQEWVKSLGAHHV-IDHSKPLAAEVAAL-GLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSH---------HHHHHHHHTTCSEE-ECTTSCHHHHHHTT-CSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCH---------HHHHHHHHcCCCEE-EeCCCCHHHHHHHh-cCCC
Confidence 577999999999999998887776 689999999821 12222222233222 23332 1233333 2336
Q ss_pred ccEEEEcccc
Q 013602 175 FTHVMHLAAQ 184 (439)
Q Consensus 175 ~d~Vi~~Ag~ 184 (439)
+|+||+++|.
T Consensus 240 ~Dvvid~~g~ 249 (363)
T 4dvj_A 240 PAFVFSTTHT 249 (363)
T ss_dssp EEEEEECSCH
T ss_pred ceEEEECCCc
Confidence 7999999873
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0033 Score=60.81 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=60.0
Q ss_pred CCEEEEECCCChHHHHH-HHHH-HhCCCe-EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH--HHHHhhccc
Q 013602 99 GISVLVTGAAGFVGTHV-SAAL-KRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA--LLKKLFDVV 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l-~~~L-~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~--~~~~~~~~~ 173 (439)
+.+|||+|| |.||... ++.+ ...|++ |++++++.+.. .+ .+....-+...+ |..+.+ .+.++ .+
T Consensus 173 ~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~---~~---~~~~~~lGa~~v--~~~~~~~~~i~~~-~g- 241 (357)
T 2b5w_A 173 PSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPD---PT---IDIIEELDATYV--DSRQTPVEDVPDV-YE- 241 (357)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSC---HH---HHHHHHTTCEEE--ETTTSCGGGHHHH-SC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccH---HH---HHHHHHcCCccc--CCCccCHHHHHHh-CC-
Confidence 379999999 9999999 8877 678987 99999843200 01 111122345544 554321 25555 44
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
.+|+||+++|... .....++.++..| ++|.++.
T Consensus 242 g~Dvvid~~g~~~-----------------~~~~~~~~l~~~G---~iv~~g~ 274 (357)
T 2b5w_A 242 QMDFIYEATGFPK-----------------HAIQSVQALAPNG---VGALLGV 274 (357)
T ss_dssp CEEEEEECSCCHH-----------------HHHHHHHHEEEEE---EEEECCC
T ss_pred CCCEEEECCCChH-----------------HHHHHHHHHhcCC---EEEEEeC
Confidence 6799999987410 1234455555544 8888765
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.01 Score=57.66 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=48.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-----HHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-----MALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~~~~~~ 170 (439)
..+.+|||+|+ |.||..+++.+...|+ +|++++++.. .. ...+ .-+...+ +|..+ .+.+.++.
T Consensus 191 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~-----~~-~~~~---~lGa~~v-i~~~~~~~~~~~~~~~~~ 259 (374)
T 1cdo_A 191 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPD-----KF-EKAK---VFGATDF-VNPNDHSEPISQVLSKMT 259 (374)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG-----GH-HHHH---HTTCCEE-ECGGGCSSCHHHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH-----HH-HHHH---HhCCceE-EeccccchhHHHHHHHHh
Confidence 35689999995 9999999999999998 7999987332 11 1111 1233221 34442 22344444
Q ss_pred cccCccEEEEcccc
Q 013602 171 DVVSFTHVMHLAAQ 184 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~ 184 (439)
.+ .+|+||+++|.
T Consensus 260 ~~-g~D~vid~~g~ 272 (374)
T 1cdo_A 260 NG-GVDFSLECVGN 272 (374)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCC
Confidence 43 67999999874
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0049 Score=55.06 Aligned_cols=66 Identities=15% Similarity=0.061 Sum_probs=45.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+|+|.|+| .|.+|..+++.|.+.|++|++.+|+. ...+.....++... +..++++++ |+
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~---------~~~~~~~~~g~~~~--------~~~~~~~~~--Dv 86 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNP---------KRTARLFPSAAQVT--------FQEEAVSSP--EV 86 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSH---------HHHHHHSBTTSEEE--------EHHHHTTSC--SE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCH---------HHHHHHHHcCCcee--------cHHHHHhCC--CE
Confidence 457899999 89999999999999999999999822 11222222344432 234556666 99
Q ss_pred EEEccc
Q 013602 178 VMHLAA 183 (439)
Q Consensus 178 Vi~~Ag 183 (439)
||.+..
T Consensus 87 Vi~av~ 92 (215)
T 2vns_A 87 IFVAVF 92 (215)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 998764
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0048 Score=58.66 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=51.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..|.+|||+||+|.+|...++.+...|++|++.++ ..+....+.+ +... ..|..+.+.+.+.++.+ |
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~-------~~~~~~~~~l---Ga~~-~i~~~~~~~~~~~~~g~--D 217 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-------KRNHAFLKAL---GAEQ-CINYHEEDFLLAISTPV--D 217 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEEC-------HHHHHHHHHH---TCSE-EEETTTSCHHHHCCSCE--E
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEec-------cchHHHHHHc---CCCE-EEeCCCcchhhhhccCC--C
Confidence 46789999999999999999999999999999986 1111112222 2221 23555555455555554 9
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+||+++|.
T Consensus 218 ~v~d~~g~ 225 (321)
T 3tqh_A 218 AVIDLVGG 225 (321)
T ss_dssp EEEESSCH
T ss_pred EEEECCCc
Confidence 99999873
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0016 Score=62.26 Aligned_cols=73 Identities=26% Similarity=0.249 Sum_probs=45.5
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH--HHHHhhcccCccEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA--LLKKLFDVVSFTHV 178 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~--~~~~~~~~~~~d~V 178 (439)
+|||+||+|.+|..+++.+...|++|++++++.++ .. ..+.+ +...+ .|..+.+ .+.++ ..-.+|+|
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~----~~--~~~~l---Ga~~~-i~~~~~~~~~~~~~-~~~~~d~v 220 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE----HD--YLRVL---GAKEV-LAREDVMAERIRPL-DKQRWAAA 220 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC----HH--HHHHT---TCSEE-EECC---------C-CSCCEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HH--HHHHc---CCcEE-EecCCcHHHHHHHh-cCCcccEE
Confidence 69999999999999999999999999999985432 11 11112 22211 3444432 22222 22257999
Q ss_pred EEcccc
Q 013602 179 MHLAAQ 184 (439)
Q Consensus 179 i~~Ag~ 184 (439)
|+++|.
T Consensus 221 id~~g~ 226 (328)
T 1xa0_A 221 VDPVGG 226 (328)
T ss_dssp EECSTT
T ss_pred EECCcH
Confidence 999974
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.018 Score=54.52 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=68.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHH--HHH-HHhhh-cCCeEEEEcccCCHHHHHHhhcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLK--KAR-QALLE-RSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~--~~~-~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
.|+|.|.|+ |.+|..++..|++.|+ +|++++|+.+ ... ... ..... .....+... ++. +.+++
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~----~~~~~~~~~~~~~~~~~~~~v~~~--~~~----~~~~~ 75 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKE----RVEAEVLDMQHGSSFYPTVSIDGS--DDP----EICRD 75 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHH----HHHHHHHHHHHTGGGSTTCEEEEE--SCG----GGGTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChh----HHHHHHHHHHhhhhhcCCeEEEeC--CCH----HHhCC
Confidence 478999997 9999999999999998 9999998321 111 000 01010 012222211 122 23455
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+ |+||-+++... ....+..+.+..|......+++.+.+......||.++
T Consensus 76 a--D~Vii~v~~~~--~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~ 124 (319)
T 1lld_A 76 A--DMVVITAGPRQ--KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 124 (319)
T ss_dssp C--SEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred C--CEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 5 99999987522 1223345677888888888888887765443444443
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.55 E-value=0.013 Score=57.02 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=48.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-----HHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-----MALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~~~~~~ 170 (439)
..+.+|||+|+ |.||..+++.+...|+ +|++++++.+ .. ...+. -+... .+|..+ .+.+.++.
T Consensus 190 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~-----~~-~~~~~---lGa~~-vi~~~~~~~~~~~~~~~~~ 258 (374)
T 2jhf_A 190 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKD-----KF-AKAKE---VGATE-CVNPQDYKKPIQEVLTEMS 258 (374)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG-----GH-HHHHH---TTCSE-EECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH-----HH-HHHHH---hCCce-EecccccchhHHHHHHHHh
Confidence 35689999995 9999999999999998 8999987332 11 11111 22221 134432 22344443
Q ss_pred cccCccEEEEcccc
Q 013602 171 DVVSFTHVMHLAAQ 184 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~ 184 (439)
.. .+|+||+++|.
T Consensus 259 ~~-g~D~vid~~g~ 271 (374)
T 2jhf_A 259 NG-GVDFSFEVIGR 271 (374)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCcEEEECCCC
Confidence 33 67999999974
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0032 Score=63.09 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=55.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCcc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFT 176 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d 176 (439)
..|+|+|.|+ |-+|+++++.|.++|++|++++++. ... ......-++.++.+|-++++.++++ ++++ |
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~-------~~~-~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~a--d 70 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENNDITIVDKDG-------DRL-RELQDKYDLRVVNGHASHPDVLHEAGAQDA--D 70 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCH-------HHH-HHHHHHSSCEEEESCTTCHHHHHHHTTTTC--S
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCH-------HHH-HHHHHhcCcEEEEEcCCCHHHHHhcCCCcC--C
Confidence 3578999995 9999999999999999999999822 111 1122334789999999999999887 4555 8
Q ss_pred EEEE
Q 013602 177 HVMH 180 (439)
Q Consensus 177 ~Vi~ 180 (439)
.+|-
T Consensus 71 ~~ia 74 (461)
T 4g65_A 71 MLVA 74 (461)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0091 Score=58.58 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=52.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC----HHHHHHhhc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND----MALLKKLFD 171 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~~~~~~~ 171 (439)
..+.+|||+|+ |.||...++.+...|+ +|++++++. .+.+....-+..+ +|..+ .+.+.++..
T Consensus 184 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~---------~~~~~a~~lGa~~--i~~~~~~~~~~~~~~~~~ 251 (398)
T 2dph_A 184 KPGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNP---------ERLKLLSDAGFET--IDLRNSAPLRDQIDQILG 251 (398)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCH---------HHHHHHHTTTCEE--EETTSSSCHHHHHHHHHS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCH---------HHHHHHHHcCCcE--EcCCCcchHHHHHHHHhC
Confidence 35789999996 9999999998888898 999999721 1222223334543 35443 345555555
Q ss_pred ccCccEEEEcccc
Q 013602 172 VVSFTHVMHLAAQ 184 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~ 184 (439)
+..+|+||+++|.
T Consensus 252 g~g~Dvvid~~g~ 264 (398)
T 2dph_A 252 KPEVDCGVDAVGF 264 (398)
T ss_dssp SSCEEEEEECSCT
T ss_pred CCCCCEEEECCCC
Confidence 4457999999974
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0097 Score=57.06 Aligned_cols=94 Identities=19% Similarity=0.082 Sum_probs=55.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC---eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD---GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+++|+|.||+|.+|+.+++.|.++++ +++.+.......... .-.+.. .++.+.+ . +.++++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~---------~~~g~~---i~~~~~~-~-~~~~~~-- 69 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM---------GFAESS---LRVGDVD-S-FDFSSV-- 69 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE---------EETTEE---EECEEGG-G-CCGGGC--
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCcc---------ccCCcc---eEEecCC-H-HHhcCC--
Confidence 36899999999999999999997765 455554211110000 001111 1122211 1 113455
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
|+||.+.+.. .+..+++.+.+.|. ++|-+|+.+
T Consensus 70 DvV~~a~g~~------------------~s~~~a~~~~~aG~--kvId~Sa~~ 102 (340)
T 2hjs_A 70 GLAFFAAAAE------------------VSRAHAERARAAGC--SVIDLSGAL 102 (340)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEETTCTT
T ss_pred CEEEEcCCcH------------------HHHHHHHHHHHCCC--EEEEeCCCC
Confidence 9999988641 13456777777775 788888765
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.013 Score=56.92 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=48.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-----HHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-----MALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~~~~~~ 170 (439)
..+.+|||+|+ |.||..+++.+...|+ +|++++++.+ .. ...+. -+...+ .|..+ .+.+.++.
T Consensus 194 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~-~~a~~---lGa~~v-i~~~~~~~~~~~~v~~~~ 262 (376)
T 1e3i_A 194 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGE-----KF-PKAKA---LGATDC-LNPRELDKPVQDVITELT 262 (376)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG-----GH-HHHHH---TTCSEE-ECGGGCSSCHHHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH-----HH-HHHHH---hCCcEE-EccccccchHHHHHHHHh
Confidence 35689999996 9999999999999998 8999987332 11 11111 222211 34432 22344444
Q ss_pred cccCccEEEEcccc
Q 013602 171 DVVSFTHVMHLAAQ 184 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~ 184 (439)
.+ .+|+||+++|.
T Consensus 263 ~~-g~Dvvid~~G~ 275 (376)
T 1e3i_A 263 AG-GVDYSLDCAGT 275 (376)
T ss_dssp TS-CBSEEEESSCC
T ss_pred CC-CccEEEECCCC
Confidence 44 67999999874
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0047 Score=59.20 Aligned_cols=76 Identities=22% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhc-ccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFD-VVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~-~~~~ 175 (439)
..+.+|||+|+ |.||...++.+...|++|++++++. .+.+....-+...+ .|..+.+..+.+.+ .-.+
T Consensus 165 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~---------~~~~~~~~lGa~~~-i~~~~~~~~~~~~~~~g~~ 233 (340)
T 3s2e_A 165 RPGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDD---------AKLNLARRLGAEVA-VNARDTDPAAWLQKEIGGA 233 (340)
T ss_dssp CTTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHTTCSEE-EETTTSCHHHHHHHHHSSE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCH---------HHHHHHHHcCCCEE-EeCCCcCHHHHHHHhCCCC
Confidence 45789999997 8999999999999999999998822 12222222232221 34444333332222 1156
Q ss_pred cEEEEccc
Q 013602 176 THVMHLAA 183 (439)
Q Consensus 176 d~Vi~~Ag 183 (439)
|+||.++|
T Consensus 234 d~vid~~g 241 (340)
T 3s2e_A 234 HGVLVTAV 241 (340)
T ss_dssp EEEEESSC
T ss_pred CEEEEeCC
Confidence 99999986
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.021 Score=54.09 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=69.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHh--hh-cCCeEEEEcccCCHHHHHHhhcccC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQAL--LE-RSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~-~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
.++|.|+|+ |.+|..++..|+..|+ +|++.+++.+..+.......... .. ...+.. .. | . ++++++
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~---d---~-~a~~~a- 73 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-TD---D---Y-ADISGS- 73 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ES---C---G-GGGTTC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-CC---C---H-HHhCCC-
Confidence 468999997 9999999999999998 99999986532221100000000 00 112221 12 2 2 345666
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
|+||-+++.... ......+.+..|......+++.+.+..+...+|++|.
T Consensus 74 -DiVi~avg~p~~--~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 74 -DVVIITASIPGR--PKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp -SEEEECCCCSSC--CSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred -CEEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 999999986321 1122334556677777788888877765435665654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0054 Score=59.60 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=48.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhc----
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFD---- 171 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~---- 171 (439)
..+.+|||+|+ |.+|...++.+...|+ +|++++++. . +....+.+ +... ..|..+.+..+.+.+
T Consensus 181 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~-----~-~~~~a~~l---Ga~~-vi~~~~~~~~~~i~~~~~~ 249 (370)
T 4ej6_A 181 KAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQA-----T-KRRLAEEV---GATA-TVDPSAGDVVEAIAGPVGL 249 (370)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCH-----H-HHHHHHHH---TCSE-EECTTSSCHHHHHHSTTSS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH-----H-HHHHHHHc---CCCE-EECCCCcCHHHHHHhhhhc
Confidence 35789999998 9999999999999999 888887621 1 11111212 2221 135544443333332
Q ss_pred --ccCccEEEEcccc
Q 013602 172 --VVSFTHVMHLAAQ 184 (439)
Q Consensus 172 --~~~~d~Vi~~Ag~ 184 (439)
+ .+|+||+++|.
T Consensus 250 ~~g-g~Dvvid~~G~ 263 (370)
T 4ej6_A 250 VPG-GVDVVIECAGV 263 (370)
T ss_dssp STT-CEEEEEECSCC
T ss_pred cCC-CCCEEEECCCC
Confidence 2 57999999873
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.002 Score=59.96 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=49.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
..+++|+|+|+ |++|+.++..|.+.|. +|++.+|+.++... +. ..+.. ...+++.+++++.
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~---------la-~~~~~-----~~~~~~~~~~~~a-- 176 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNN---------WS-LNINK-----INLSHAESHLDEF-- 176 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTT---------CC-SCCEE-----ECHHHHHHTGGGC--
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH---------HH-Hhccc-----ccHhhHHHHhcCC--
Confidence 56789999996 9999999999999998 89999994432111 11 12222 1345566777777
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+|||+...
T Consensus 177 DiVInaTp~ 185 (277)
T 3don_A 177 DIIINTTPA 185 (277)
T ss_dssp SEEEECCC-
T ss_pred CEEEECccC
Confidence 999998654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.023 Score=54.74 Aligned_cols=34 Identities=35% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r 131 (439)
..|.+|||+|+ |.||...++.+...|+ +|+++++
T Consensus 170 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~ 204 (356)
T 1pl8_A 170 TLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDL 204 (356)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECC
Confidence 35789999996 9999999999888999 8999987
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.026 Score=53.27 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=73.5
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|.|+|| |.+|..++..|+..|. +|++.+++.++............ .....+.+... +|. ++++++ |+|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~----~a~~~a--D~V 71 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS--NSY----EDMRGS--DIV 71 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE--SCG----GGGTTC--SEE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC--CCH----HHhCCC--CEE
Confidence 4889998 9999999999998887 69999986543221111111110 01112222220 222 357777 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|..||... ..-....+....|..-...+.+.+.+..+...+|++|
T Consensus 72 i~~ag~~~--k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (308)
T 2d4a_B 72 LVTAGIGR--KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116 (308)
T ss_dssp EECCSCCC--CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 99998632 2223445778889999999999998877665777775
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.017 Score=52.90 Aligned_cols=112 Identities=19% Similarity=0.165 Sum_probs=67.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------------CChhHHHHHHHhh-hcCC--eEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------------YDPSLKKARQALL-ERSG--IFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~~~~~~~~~~-~~~~--v~~~~ 157 (439)
+.+++|+|.|+ |++|+++++.|+..|. ++++++++.-. +............ -.+. +..+.
T Consensus 26 l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 104 (251)
T 1zud_1 26 LLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ 104 (251)
T ss_dssp HHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 45679999996 8899999999999997 67777664310 0111111111111 1234 44444
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
.+++ .+.+.++++++ |+||++.. +.. .-..+.++|.+.+. .+|..+..+.+|
T Consensus 105 ~~~~-~~~~~~~~~~~--DvVi~~~d---------~~~--------~r~~l~~~~~~~~~--p~i~~~~~g~~G 156 (251)
T 1zud_1 105 QRLT-GEALKDAVARA--DVVLDCTD---------NMA--------TRQEINAACVALNT--PLITASAVGFGG 156 (251)
T ss_dssp SCCC-HHHHHHHHHHC--SEEEECCS---------SHH--------HHHHHHHHHHHTTC--CEEEEEEEBTEE
T ss_pred ccCC-HHHHHHHHhcC--CEEEECCC---------CHH--------HHHHHHHHHHHhCC--CEEEEeccccce
Confidence 4443 46677888877 99998752 211 12356667777664 677776655444
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0083 Score=57.98 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=59.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
|++++|.|.||+|.+|+.+++.|.++.. +++++.+..+..... .. ....-.+.. ..|+.-.+ ++.++++
T Consensus 14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~-~~---~~~~~~~~v--~~dl~~~~--~~~~~~v-- 83 (359)
T 1xyg_A 14 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSM-ES---VFPHLRAQK--LPTLVSVK--DADFSTV-- 83 (359)
T ss_dssp -CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCH-HH---HCGGGTTSC--CCCCBCGG--GCCGGGC--
T ss_pred ccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCH-HH---hCchhcCcc--cccceecc--hhHhcCC--
Confidence 4457899999999999999999998864 888887643222111 10 000001110 13433222 3344555
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
|+||.+++... +......+ +.|. ++|-.|+..
T Consensus 84 DvVf~atp~~~------------------s~~~a~~~-~aG~--~VId~sa~~ 115 (359)
T 1xyg_A 84 DAVFCCLPHGT------------------TQEIIKEL-PTAL--KIVDLSADF 115 (359)
T ss_dssp SEEEECCCTTT------------------HHHHHHTS-CTTC--EEEECSSTT
T ss_pred CEEEEcCCchh------------------HHHHHHHH-hCCC--EEEECCccc
Confidence 99999986422 23455555 5564 888888854
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.012 Score=57.02 Aligned_cols=76 Identities=24% Similarity=0.200 Sum_probs=48.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-----HHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-----MALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~~~~~~ 170 (439)
..+.+|||+|+ |.||..+++.+...|+ +|++++++.+ .. ...+.+ +... ..|..+ .+.+.++.
T Consensus 189 ~~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~-----~~-~~~~~l---Ga~~-vi~~~~~~~~~~~~v~~~~ 257 (373)
T 2fzw_A 189 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKD-----KF-ARAKEF---GATE-CINPQDFSKPIQEVLIEMT 257 (373)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG-----GH-HHHHHH---TCSE-EECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH-----HH-HHHHHc---CCce-EeccccccccHHHHHHHHh
Confidence 35789999996 9999999999888998 7999987332 11 111112 2221 124432 22344444
Q ss_pred cccCccEEEEcccc
Q 013602 171 DVVSFTHVMHLAAQ 184 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~ 184 (439)
.+ .+|+||+++|.
T Consensus 258 ~~-g~D~vid~~g~ 270 (373)
T 2fzw_A 258 DG-GVDYSFECIGN 270 (373)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCc
Confidence 33 67999999874
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.015 Score=56.42 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=48.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC-----HHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND-----MALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~~~~~~ 170 (439)
..+.+|||+|+ |.||..+++.+...|+ +|++++++.+ .. ...+. -+...+ .|..+ .+.+.++.
T Consensus 190 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~-~~a~~---lGa~~v-i~~~~~~~~~~~~i~~~t 258 (373)
T 1p0f_A 190 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKD-----KF-PKAIE---LGATEC-LNPKDYDKPIYEVICEKT 258 (373)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG-----GH-HHHHH---TTCSEE-ECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHH-----HH-HHHHH---cCCcEE-EecccccchHHHHHHHHh
Confidence 35789999995 9999999998888898 7999987332 11 11111 222211 24332 22344444
Q ss_pred cccCccEEEEcccc
Q 013602 171 DVVSFTHVMHLAAQ 184 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~ 184 (439)
.+ .+|+||+++|.
T Consensus 259 ~g-g~Dvvid~~g~ 271 (373)
T 1p0f_A 259 NG-GVDYAVECAGR 271 (373)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCC
Confidence 44 67999999874
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0075 Score=57.98 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=59.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
+++|.|.||+|.||+.+++.|.++.. +++.+.+........... .... .+. ...++.+.+ + ++++ |+
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~--~~~~--~g~--~~~~~~~~~---~-~~~v--Dv 71 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFV--HPNL--RGR--TNLKFVPPE---K-LEPA--DI 71 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGT--CGGG--TTT--CCCBCBCGG---G-CCCC--SE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHh--Cchh--cCc--ccccccchh---H-hcCC--CE
Confidence 47899999999999999999998765 888777633221111000 0000 010 011223332 2 3445 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
||.+++... +..+++.+.+.|. ++|-+|+..
T Consensus 72 V~~a~g~~~------------------s~~~a~~~~~aG~--~VId~Sa~~ 102 (345)
T 2ozp_A 72 LVLALPHGV------------------FAREFDRYSALAP--VLVDLSADF 102 (345)
T ss_dssp EEECCCTTH------------------HHHTHHHHHTTCS--EEEECSSTT
T ss_pred EEEcCCcHH------------------HHHHHHHHHHCCC--EEEEcCccc
Confidence 999886421 3455666667774 888888854
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.059 Score=50.64 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=73.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.+++|.|+|| |.+|..++..|+.+|. +|++.+++.+ ......... ....+.+.. ..| . +.++++
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~dl~--~~~~~~i~~-t~d------~-~~l~~a-- 78 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG-TKGATMDLE--IFNLPNVEI-SKD------L-SASAHS-- 78 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHH--HHTCTTEEE-ESC------G-GGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHHHh--hhcCCCeEE-eCC------H-HHHCCC--
Confidence 3478999996 9999999999999998 9999998664 221111111 122234443 223 2 446777
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||..+|.. ..-....+.+..|..-...+++.+.+..+...+|++|
T Consensus 79 D~Vi~aag~~---~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~s 125 (303)
T 2i6t_A 79 KVVIFTVNSL---GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVAS 125 (303)
T ss_dssp SEEEECCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECS
T ss_pred CEEEEcCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 9999999873 2223445678888888899999988877665666666
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.023 Score=56.49 Aligned_cols=94 Identities=12% Similarity=0.145 Sum_probs=64.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC-C---eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC--H-HHHHHhhcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG-D---GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND--M-ALLKKLFDV 172 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~-~~~~~~~~~ 172 (439)
++|+|.| .|+||+.++..|+++. . +|++++......+. .+. .++.+...++++ . +.+.+++++
T Consensus 14 ~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~------~~~---~g~~~~~~~Vdadnv~~~l~aLl~~ 83 (480)
T 2ph5_A 14 NRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDV------AQQ---YGVSFKLQQITPQNYLEVIGSTLEE 83 (480)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCH------HHH---HTCEEEECCCCTTTHHHHTGGGCCT
T ss_pred CCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhH------Hhh---cCCceeEEeccchhHHHHHHHHhcC
Confidence 5799999 7999999999999875 4 79988875443211 111 145666666654 4 346678876
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
. |+|||.+-.. ....++++|.++|. .+|-++
T Consensus 84 ~--DvVIN~s~~~------------------~~l~Im~acleaGv--~YlDTa 114 (480)
T 2ph5_A 84 N--DFLIDVSIGI------------------SSLALIILCNQKGA--LYINAA 114 (480)
T ss_dssp T--CEEEECCSSS------------------CHHHHHHHHHHHTC--EEEESS
T ss_pred C--CEEEECCccc------------------cCHHHHHHHHHcCC--CEEECC
Confidence 3 9999855221 13578999999996 555544
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.033 Score=54.62 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH---HHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM---ALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~ 172 (439)
..|.+|||+|+ |.||...++.+...|+ +|++++++. .+....+.+ +...+ .|..+. +.+.++..+
T Consensus 212 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~------~~~~~~~~l---Ga~~v-i~~~~~~~~~~i~~~t~g 280 (404)
T 3ip1_A 212 RPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSE------VRRNLAKEL---GADHV-IDPTKENFVEAVLDYTNG 280 (404)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCH------HHHHHHHHH---TCSEE-ECTTTSCHHHHHHHHTTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH------HHHHHHHHc---CCCEE-EcCCCCCHHHHHHHHhCC
Confidence 35789999998 9999999999999999 899988621 111112222 22211 244333 344555544
Q ss_pred cCccEEEEcccc
Q 013602 173 VSFTHVMHLAAQ 184 (439)
Q Consensus 173 ~~~d~Vi~~Ag~ 184 (439)
..+|+||.++|.
T Consensus 281 ~g~D~vid~~g~ 292 (404)
T 3ip1_A 281 LGAKLFLEATGV 292 (404)
T ss_dssp CCCSEEEECSSC
T ss_pred CCCCEEEECCCC
Confidence 467999999874
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.016 Score=56.32 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=50.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC--C---HHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN--D---MALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d---~~~~~~~~ 170 (439)
..+.+|||+|+ |.||...++.+...|+ +|++++++.+ +.+....-+... ..|.. + .+.+.++.
T Consensus 192 ~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~---------~~~~a~~lGa~~-vi~~~~~~~~~~~~i~~~~ 260 (378)
T 3uko_A 192 EPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSK---------KYETAKKFGVNE-FVNPKDHDKPIQEVIVDLT 260 (378)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTT---------HHHHHHTTTCCE-EECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH---------HHHHHHHcCCcE-EEccccCchhHHHHHHHhc
Confidence 35779999998 9999999999999998 8999987432 111222223322 13433 1 23455555
Q ss_pred cccCccEEEEcccc
Q 013602 171 DVVSFTHVMHLAAQ 184 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~ 184 (439)
.+ .+|+||+++|.
T Consensus 261 ~g-g~D~vid~~g~ 273 (378)
T 3uko_A 261 DG-GVDYSFECIGN 273 (378)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCC
Confidence 55 78999999874
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.011 Score=54.79 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=31.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r 131 (439)
..+++++|+|+ |++|+.++..|++.|. +|++++|
T Consensus 118 l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R 152 (272)
T 3pwz_A 118 LRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANR 152 (272)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECS
T ss_pred ccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeC
Confidence 57899999996 8999999999999995 9999999
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.011 Score=55.06 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=32.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 132 (439)
..+++++|+|+ |++|+.++..|++.|. +|++.+|+
T Consensus 124 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~ 159 (281)
T 3o8q_A 124 LKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRT 159 (281)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECC
Confidence 57899999996 8999999999999996 99999993
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.013 Score=55.15 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=51.1
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
...+++|+|.|+ |.||+.+++.|...|.+|++.+|+. .+ .+.....++..+. .+++.+++++.
T Consensus 154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~-------~~--~~~~~~~g~~~~~-----~~~l~~~l~~a-- 216 (300)
T 2rir_A 154 TIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSS-------AH--LARITEMGLVPFH-----TDELKEHVKDI-- 216 (300)
T ss_dssp CSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSH-------HH--HHHHHHTTCEEEE-----GGGHHHHSTTC--
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCH-------HH--HHHHHHCCCeEEc-----hhhHHHHhhCC--
Confidence 367899999995 9999999999999999999999822 11 1111112344332 23567777777
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||++...
T Consensus 217 DvVi~~~p~ 225 (300)
T 2rir_A 217 DICINTIPS 225 (300)
T ss_dssp SEEEECCSS
T ss_pred CEEEECCCh
Confidence 999998754
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0062 Score=58.84 Aligned_cols=75 Identities=23% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+.+|||+|+ |.||...++.+...|++|++++++.+ +..... ..-+... ..|..+.+.+.++.. .+|+
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~------~~~~~~--~~lGa~~-vi~~~~~~~~~~~~~--g~D~ 247 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNK------KREEAL--QDLGADD-YVIGSDQAKMSELAD--SLDY 247 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTT------HHHHHH--TTSCCSC-EEETTCHHHHHHSTT--TEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChH------HHHHHH--HHcCCce-eeccccHHHHHHhcC--CCCE
Confidence 5789999995 99999999999889999999998432 111111 0112221 135556666666554 4599
Q ss_pred EEEcccc
Q 013602 178 VMHLAAQ 184 (439)
Q Consensus 178 Vi~~Ag~ 184 (439)
||+++|.
T Consensus 248 vid~~g~ 254 (357)
T 2cf5_A 248 VIDTVPV 254 (357)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999984
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.003 Score=61.12 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=49.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH-HHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM-ALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~~~~~~~~~~~ 175 (439)
..+.+|||+|+ |.||..+++.+...|++|++++++.++ .. ..+.+ +... ..|..+. +..+++.. .+
T Consensus 178 ~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~----~~--~~~~l---Ga~~-v~~~~~~~~~~~~~~~--~~ 244 (360)
T 1piw_A 178 GPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRK----RE--DAMKM---GADH-YIATLEEGDWGEKYFD--TF 244 (360)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTT----HH--HHHHH---TCSE-EEEGGGTSCHHHHSCS--CE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHH----HH--HHHHc---CCCE-EEcCcCchHHHHHhhc--CC
Confidence 35789999999 999999999998899999999985432 11 11112 2221 1344443 33333332 56
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||+++|.
T Consensus 245 D~vid~~g~ 253 (360)
T 1piw_A 245 DLIVVCASS 253 (360)
T ss_dssp EEEEECCSC
T ss_pred CEEEECCCC
Confidence 999999975
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.014 Score=54.63 Aligned_cols=70 Identities=19% Similarity=0.138 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+++|+|.| .|.||+.+++.|...|.+|++.+|+. .+ .+.....++..+. .+++.+++++. |
T Consensus 153 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~-------~~--~~~~~~~g~~~~~-----~~~l~~~l~~a--D 215 (293)
T 3d4o_A 153 IHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARES-------DL--LARIAEMGMEPFH-----ISKAAQELRDV--D 215 (293)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSH-------HH--HHHHHHTTSEEEE-----GGGHHHHTTTC--S
T ss_pred CCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCH-------HH--HHHHHHCCCeecC-----hhhHHHHhcCC--C
Confidence 6789999999 59999999999999999999999822 11 1111122444332 23566777777 9
Q ss_pred EEEEccc
Q 013602 177 HVMHLAA 183 (439)
Q Consensus 177 ~Vi~~Ag 183 (439)
+|+++..
T Consensus 216 vVi~~~p 222 (293)
T 3d4o_A 216 VCINTIP 222 (293)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9998874
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.021 Score=55.98 Aligned_cols=76 Identities=25% Similarity=0.222 Sum_probs=50.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC----HHHHHHhhc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND----MALLKKLFD 171 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~~~~~~~ 171 (439)
..+.+|||+|+ |.||...++.+...|+ +|++++++. .+.+....-+... +|..+ .+.+.++..
T Consensus 184 ~~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~---------~~~~~a~~lGa~~--i~~~~~~~~~~~v~~~t~ 251 (398)
T 1kol_A 184 GPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNP---------ARLAHAKAQGFEI--ADLSLDTPLHEQIAALLG 251 (398)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCH---------HHHHHHHHTTCEE--EETTSSSCHHHHHHHHHS
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCH---------HHHHHHHHcCCcE--EccCCcchHHHHHHHHhC
Confidence 35789999995 9999999999888998 688888721 2222222334443 34443 234555544
Q ss_pred ccCccEEEEcccc
Q 013602 172 VVSFTHVMHLAAQ 184 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~ 184 (439)
...+|+||+++|.
T Consensus 252 g~g~Dvvid~~G~ 264 (398)
T 1kol_A 252 EPEVDCAVDAVGF 264 (398)
T ss_dssp SSCEEEEEECCCT
T ss_pred CCCCCEEEECCCC
Confidence 4457999999985
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.024 Score=53.50 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=67.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhh-----hcCCeEEEEcccCCHHHHHHhhcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALL-----ERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
|+|.|+| .|.+|..++..|+++| ++|++.+|+.+. ......+.. ....+..... |. +.+++
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~---d~----~~~~~ 69 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAK----VKADQIDFQDAMANLEAHGNIVIN---DW----AALAD 69 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHH----HHHHHHHHHHHGGGSSSCCEEEES---CG----GGGTT
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHH----HHHHHHHHHhhhhhcCCCeEEEeC---CH----HHhCC
Confidence 6899999 7999999999999999 899999984321 111111111 0112333222 32 34566
Q ss_pred cCccEEEEcccccCccc--cccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 173 VSFTHVMHLAAQAGVRY--AMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~--~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+ |+||-+++...... ......+....|......+++.+.+..+...+|++|
T Consensus 70 a--DvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 70 A--DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp C--SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred C--CEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 6 99999887532100 111223456678878888888887766543555544
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0063 Score=58.92 Aligned_cols=76 Identities=22% Similarity=0.219 Sum_probs=53.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEccc----------------
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI---------------- 160 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl---------------- 160 (439)
..+.+|+|+|+ |-+|..+++.|...|++|++++|+.. +.+....-+..++.+|+
T Consensus 182 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~---------~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~ 251 (381)
T 3p2y_A 182 VKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPE---------VAEQVRSVGAQWLDLGIDAAGEGGYARELSEAE 251 (381)
T ss_dssp ECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGG---------GHHHHHHTTCEECCCC-------------CHHH
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHcCCeEEeccccccccccchhhhhHHH
Confidence 35679999996 99999999999999999999998332 11111122455544331
Q ss_pred --CCHHHHHHhhcccCccEEEEcccc
Q 013602 161 --NDMALLKKLFDVVSFTHVMHLAAQ 184 (439)
Q Consensus 161 --~d~~~~~~~~~~~~~d~Vi~~Ag~ 184 (439)
.+.+.+.++++++ |+||.++..
T Consensus 252 ~~~~~~~l~e~l~~a--DIVI~tv~i 275 (381)
T 3p2y_A 252 RAQQQQALEDAITKF--DIVITTALV 275 (381)
T ss_dssp HHHHHHHHHHHHTTC--SEEEECCCC
T ss_pred HhhhHHHHHHHHhcC--CEEEECCCC
Confidence 1245677888888 999988754
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.022 Score=51.77 Aligned_cols=83 Identities=20% Similarity=0.302 Sum_probs=48.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEE-ECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhc-ccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGL-DNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFD-VVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~-~~~~ 175 (439)
.+++|.|+|+ |.+|+.+++.+.+++++++++ +++........-....+... ... +.+|++.++.+.+.++ ..+.
T Consensus 2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~--~~D-VvIDft~p~a~~~~~~l~~g~ 77 (243)
T 3qy9_A 2 ASMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK--GAD-VAIDFSNPNLLFPLLDEDFHL 77 (243)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT--TCS-EEEECSCHHHHHHHHTSCCCC
T ss_pred CceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh--CCC-EEEEeCChHHHHHHHHHhcCC
Confidence 3579999999 999999999999987776664 44322000000000000000 222 2358888888777664 2245
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
++|+.+.|.
T Consensus 78 ~vVigTTG~ 86 (243)
T 3qy9_A 78 PLVVATTGE 86 (243)
T ss_dssp CEEECCCSS
T ss_pred ceEeCCCCC
Confidence 777776653
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.014 Score=53.16 Aligned_cols=74 Identities=20% Similarity=0.150 Sum_probs=50.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcc---cCc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDV---VSF 175 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~---~~~ 175 (439)
++|.|.|++|.+|+.+++.+.+. |++++++.+..+ .... ... .... +.+|.++++.+.+.++. .+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~----dl~~----~~~-~~~D-vvIDfT~p~a~~~~~~~a~~~g~ 70 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD----PLSL----LTD-GNTE-VVIDFTHPDVVMGNLEFLIDNGI 70 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC----CTHH----HHH-TTCC-EEEECSCTTTHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC----CHHH----Hhc-cCCc-EEEEccChHHHHHHHHHHHHcCC
Confidence 47999999999999999999866 899987765321 1111 111 1233 56788888877665543 356
Q ss_pred cEEEEccc
Q 013602 176 THVMHLAA 183 (439)
Q Consensus 176 d~Vi~~Ag 183 (439)
++|+-..|
T Consensus 71 ~~VigTTG 78 (245)
T 1p9l_A 71 HAVVGTTG 78 (245)
T ss_dssp EEEECCCC
T ss_pred CEEEcCCC
Confidence 88887665
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0087 Score=55.36 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=47.0
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
...||+|+|+|+++.+|+.++..|+.+|++|+++.+.. ..+.+.++..
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------------------------~~L~~~~~~A-- 204 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------------------------KDLSLYTRQA-- 204 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHTTC--
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHhhcC--
Confidence 37899999999999999999999999999999987621 1245666666
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||...|.
T Consensus 205 DIVI~Avg~ 213 (285)
T 3p2o_A 205 DLIIVAAGC 213 (285)
T ss_dssp SEEEECSSC
T ss_pred CEEEECCCC
Confidence 999988875
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.022 Score=54.45 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=57.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCC---CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRG---DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+++|.|.||+|.||+.+++.|.+++ .+|+++....+.+.... .....+.+...| ++ .++++
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~-------~~~~~i~~~~~~---~~----~~~~v-- 66 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR-------FNGKTVRVQNVE---EF----DWSQV-- 66 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE-------ETTEEEEEEEGG---GC----CGGGC--
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee-------ecCceeEEecCC---hH----HhcCC--
Confidence 4789999999999999999999984 46777663211111000 111122222222 11 23455
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
|+||-+.|.. .+....+.+.+.|. ++|-.|+..
T Consensus 67 DvVf~a~g~~------------------~s~~~a~~~~~~G~--~vId~s~~~ 99 (336)
T 2r00_A 67 HIALFSAGGE------------------LSAKWAPIAAEAGV--VVIDNTSHF 99 (336)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEECSSTT
T ss_pred CEEEECCCch------------------HHHHHHHHHHHcCC--EEEEcCCcc
Confidence 9999888641 13456666677775 888888864
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.018 Score=55.49 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
..|.+|||+||+|.+|...++.+...|++|+++++.
T Consensus 166 ~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~ 201 (357)
T 1zsy_A 166 QPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRD 201 (357)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecC
Confidence 357899999999999999999888889999988863
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.022 Score=54.79 Aligned_cols=99 Identities=15% Similarity=0.072 Sum_probs=60.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH---HHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM---ALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~ 172 (439)
..+.+|||+|+ |.||...++.+...|+ +|++++++. . +....+.+ +... ..|..+. +.+.++..+
T Consensus 165 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~-----~-~~~~~~~l---Ga~~-vi~~~~~~~~~~v~~~t~g 233 (352)
T 3fpc_A 165 KLGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRK-----H-CCDIALEY---GATD-IINYKNGDIVEQILKATDG 233 (352)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCH-----H-HHHHHHHH---TCCE-EECGGGSCHHHHHHHHTTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCH-----H-HHHHHHHh---CCce-EEcCCCcCHHHHHHHHcCC
Confidence 35789999995 9999999999988998 899998721 1 11111222 2221 1243333 334444444
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
..+|+||+++|... .....++.++..| ++|.++.
T Consensus 234 ~g~D~v~d~~g~~~-----------------~~~~~~~~l~~~G---~~v~~G~ 267 (352)
T 3fpc_A 234 KGVDKVVIAGGDVH-----------------TFAQAVKMIKPGS---DIGNVNY 267 (352)
T ss_dssp CCEEEEEECSSCTT-----------------HHHHHHHHEEEEE---EEEECCC
T ss_pred CCCCEEEECCCChH-----------------HHHHHHHHHhcCC---EEEEecc
Confidence 46799999987421 1234455555544 8887764
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.015 Score=56.81 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=53.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcc----------------c
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD----------------I 160 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D----------------l 160 (439)
..+.+|+|+|+ |-+|..+++.+...|++|++.+++.. +.+....-+..++..+ +
T Consensus 188 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~---------~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~ 257 (405)
T 4dio_A 188 VPAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPA---------AKEQVASLGAKFIAVEDEEFKAAETAGGYAKEM 257 (405)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTT---------HHHHHHHTTCEECCCCC----------------
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHH---------HHHHHHHcCCceeecccccccccccccchhhhc
Confidence 35579999996 99999999999999999999998432 1111111234443332 2
Q ss_pred CC------HHHHHHhhcccCccEEEEcccc
Q 013602 161 ND------MALLKKLFDVVSFTHVMHLAAQ 184 (439)
Q Consensus 161 ~d------~~~~~~~~~~~~~d~Vi~~Ag~ 184 (439)
++ .+.+.++++++ |+||+++.+
T Consensus 258 s~~~~~~~~~~l~e~l~~a--DVVI~tvli 285 (405)
T 4dio_A 258 SGEYQVKQAALVAEHIAKQ--DIVITTALI 285 (405)
T ss_dssp -CHHHHHHHHHHHHHHHTC--SEEEECCCC
T ss_pred chhhhhhhHhHHHHHhcCC--CEEEECCcC
Confidence 22 34788888888 999998764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.005 Score=59.27 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=47.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..|.+|||+|+ |.||...++.+...|++|++++++.++ ....+.+ +...+. .+.+.+.+ .+|
T Consensus 175 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~------~~~~~~l---Ga~~v~---~~~~~~~~-----~~D 236 (348)
T 3two_A 175 TKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHK------KQDALSM---GVKHFY---TDPKQCKE-----ELD 236 (348)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTT------HHHHHHT---TCSEEE---SSGGGCCS-----CEE
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHH------HHHHHhc---CCCeec---CCHHHHhc-----CCC
Confidence 45789999997 999999999999999999999885432 1111112 222222 34433222 569
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+||+++|.
T Consensus 237 ~vid~~g~ 244 (348)
T 3two_A 237 FIISTIPT 244 (348)
T ss_dssp EEEECCCS
T ss_pred EEEECCCc
Confidence 99999985
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.032 Score=53.21 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=59.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhC-CCeEEEEECCC---CCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDNFN---DYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
|++|.|.||||++|..+++.|.++ .+++..+.... ..+... ............+.+... .+.+ ++++++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~-~~~~p~~~~~~~~~v~~~--~~~~---~~~~~~- 76 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLI-SDLHPQLKGIVELPLQPM--SDIS---EFSPGV- 76 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBH-HHHCGGGTTTCCCBEEEE--SSGG---GTCTTC-
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCch-HHhCccccCccceeEecc--CCHH---HHhcCC-
Confidence 478999999999999999999985 56888776533 211111 111000001112333222 0222 233555
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
|+||-+.+.. .+..+.+.+.+.|. ++|-.|+..
T Consensus 77 -Dvvf~a~p~~------------------~s~~~~~~~~~~g~--~vIDlSa~f 109 (337)
T 3dr3_A 77 -DVVFLATAHE------------------VSHDLAPQFLEAGC--VVFDLSGAF 109 (337)
T ss_dssp -SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEECSSTT
T ss_pred -CEEEECCChH------------------HHHHHHHHHHHCCC--EEEEcCCcc
Confidence 9999887531 13455666667775 899999865
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.011 Score=58.12 Aligned_cols=76 Identities=22% Similarity=0.209 Sum_probs=50.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC-------------CH
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN-------------DM 163 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-------------d~ 163 (439)
..+++|+|+|+ |.+|..+++.+...|++|++++++.. ..+.. ..-+..++..|.. +.
T Consensus 170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~-----~~~~~----~~lGa~~~~~~~~~~~~~~~g~~~~~~~ 239 (401)
T 1x13_A 170 VPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPE-----VKEQV----QSMGAEFLELDFKEEAGSGDGYAKVMSD 239 (401)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGG-----GHHHH----HHTTCEECCC--------CCHHHHHHSH
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHH-----HHHHH----HHcCCEEEEecccccccccccchhhccH
Confidence 46789999995 99999999999999999999998332 11111 1124444433321 11
Q ss_pred -------HHHHHhhcccCccEEEEcccc
Q 013602 164 -------ALLKKLFDVVSFTHVMHLAAQ 184 (439)
Q Consensus 164 -------~~~~~~~~~~~~d~Vi~~Ag~ 184 (439)
+.+.+++.++ |+||++++.
T Consensus 240 ~~~~~~~~~l~e~~~~a--DvVI~~~~~ 265 (401)
T 1x13_A 240 AFIKAEMELFAAQAKEV--DIIVTTALI 265 (401)
T ss_dssp HHHHHHHHHHHHHHHHC--SEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCC--CEEEECCcc
Confidence 1466777776 999999754
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.07 Score=51.37 Aligned_cols=36 Identities=17% Similarity=0.026 Sum_probs=32.1
Q ss_pred CC-CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 98 NG-ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 98 ~~-~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
.| .+|||+||+|.+|...++.+...|++|++++++.
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~ 202 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDR 202 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCc
Confidence 56 8999999999999999998888999999998733
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.035 Score=52.67 Aligned_cols=67 Identities=18% Similarity=0.136 Sum_probs=46.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+|+|.|.| .|.+|..+++.|++.|++|++.+|+. ...+.....++... .++.+++++. |
T Consensus 29 ~~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~---------~~~~~l~~~g~~~~-------~~~~e~~~~a--D 89 (320)
T 4dll_A 29 PYARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTP---------ARAASLAALGATIH-------EQARAAARDA--D 89 (320)
T ss_dssp CCCSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCH---------HHHHHHHTTTCEEE-------SSHHHHHTTC--S
T ss_pred cCCCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCH---------HHHHHHHHCCCEee-------CCHHHHHhcC--C
Confidence 4568999998 69999999999999999999999822 12222222344321 2345666666 9
Q ss_pred EEEEcc
Q 013602 177 HVMHLA 182 (439)
Q Consensus 177 ~Vi~~A 182 (439)
+||-+.
T Consensus 90 vVi~~v 95 (320)
T 4dll_A 90 IVVSML 95 (320)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 988765
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.019 Score=56.51 Aligned_cols=72 Identities=25% Similarity=0.178 Sum_probs=48.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
..+++|+|.|+ |.+|..+++.|...|. +|++.+|+.. ......... +... .+. +++.+++.++
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~-----ra~~la~~~---g~~~--~~~---~~l~~~l~~a-- 228 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYE-----RAVELARDL---GGEA--VRF---DELVDHLARS-- 228 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHH-----HHHHHHHHH---TCEE--CCG---GGHHHHHHTC--
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHc---CCce--ecH---HhHHHHhcCC--
Confidence 57899999997 9999999999999998 9999998221 111111111 2332 222 3455666666
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||++.+.
T Consensus 229 DvVi~at~~ 237 (404)
T 1gpj_A 229 DVVVSATAA 237 (404)
T ss_dssp SEEEECCSS
T ss_pred CEEEEccCC
Confidence 999999764
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.013 Score=57.19 Aligned_cols=36 Identities=33% Similarity=0.338 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
..+++|+|+|+ |.+|..+++.+...|.+|++.+|+.
T Consensus 170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 170 VPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRA 205 (384)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999995 9999999999999999999999844
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.01 Score=55.92 Aligned_cols=32 Identities=25% Similarity=0.552 Sum_probs=29.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
+|+|.|.|+ |.+|..++..|++.|++|++.+|
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r 34 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQ 34 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCcEEEEEC
Confidence 468999995 99999999999999999999998
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.05 Score=51.79 Aligned_cols=36 Identities=36% Similarity=0.346 Sum_probs=30.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFN 133 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 133 (439)
..+++|+|.| .|++|+++++.|+..|. ++++++++.
T Consensus 32 L~~~~VlIvG-aGGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 32 IKNTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp HHTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred HhCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 4567999999 59999999999999996 677777654
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.023 Score=54.75 Aligned_cols=108 Identities=20% Similarity=0.164 Sum_probs=66.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------------CChhHHHHH---HHhhhcCCeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------------YDPSLKKAR---QALLERSGIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~~~~~~---~~~~~~~~v~~~~ 157 (439)
+.+++|+|.|+ |++|+++++.|+..|. ++++++++.-. +........ .+....-.++.+.
T Consensus 116 L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 194 (353)
T 3h5n_A 116 LKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIA 194 (353)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEE
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEee
Confidence 45679999995 9999999999999996 78888875411 011111111 1111123466677
Q ss_pred cccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 158 ~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
.++++...+.+ ++++ |+||++.. ++.. .-..+.++|.+.+. .+|+.+.
T Consensus 195 ~~i~~~~~~~~-~~~~--DlVvd~~D---------n~~~-------~r~~ln~~c~~~~~--p~i~~~~ 242 (353)
T 3h5n_A 195 LNINDYTDLHK-VPEA--DIWVVSAD---------HPFN-------LINWVNKYCVRANQ--PYINAGY 242 (353)
T ss_dssp CCCCSGGGGGG-SCCC--SEEEECCC---------CSTT-------HHHHHHHHHHHTTC--CEEEEEE
T ss_pred cccCchhhhhH-hccC--CEEEEecC---------ChHH-------HHHHHHHHHHHhCC--CEEEEEE
Confidence 77776654555 6665 99998752 2210 12345577888874 6776654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0016 Score=62.32 Aligned_cols=34 Identities=41% Similarity=0.518 Sum_probs=31.1
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
+|||+||+|.||..+++.+...|++|++++++.+
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~ 186 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE 186 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 7999999999999999999999999999998543
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.02 Score=55.15 Aligned_cols=32 Identities=31% Similarity=0.296 Sum_probs=28.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC-CeEEEEEC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDN 131 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r 131 (439)
++|.|.||+|.+|+.+++.|.+++ .+|+++.+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~ 41 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAA 41 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 689999999999999999998875 58888865
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.048 Score=52.62 Aligned_cols=95 Identities=20% Similarity=0.141 Sum_probs=55.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC---eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD---GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+++|.|.||||++|..+++.|.++++ ++..+.-....+.... .....+.+...| .+ .++++
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~-------~~~~~~~~~~~~---~~----~~~~~-- 65 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK-------FKDQDITIEETT---ET----AFEGV-- 65 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE-------ETTEEEEEEECC---TT----TTTTC--
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce-------ecCCCceEeeCC---HH----HhcCC--
Confidence 35899999999999999999999876 3444432111111110 000112222222 11 23555
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV 229 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v 229 (439)
|+||-+++.. .+......+.+.|. ++|-.|+..-
T Consensus 66 Dvvf~a~~~~------------------~s~~~a~~~~~~G~--~vIDlSa~~R 99 (366)
T 3pwk_A 66 DIALFSAGSS------------------TSAKYAPYAVKAGV--VVVDNTSYFR 99 (366)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEECSSTTT
T ss_pred CEEEECCChH------------------hHHHHHHHHHHCCC--EEEEcCCccc
Confidence 9999988631 13455666667775 8888888653
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.017 Score=53.77 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=33.7
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
...|++|+|.|+++-+|+.++..|+++|++|+++.|
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~ 197 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHS 197 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 378999999999999999999999999999999986
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.015 Score=53.81 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=46.8
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
...|++|+|.|+++-+|+.++..|+.+|++|+++.+.. ..+.+.++..
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------------------------~~L~~~~~~A-- 205 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------------------------TDLKSHTTKA-- 205 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SSHHHHHTTC--
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHhcccC--
Confidence 37899999999999999999999999999999887611 1245666666
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||...|.
T Consensus 206 DIVI~Avg~ 214 (285)
T 3l07_A 206 DILIVAVGK 214 (285)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999998875
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.028 Score=52.26 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r 131 (439)
..+++|+|+|+ |+.|+.++..|.+.|. +|++++|
T Consensus 120 ~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nR 154 (282)
T 3fbt_A 120 IKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTR 154 (282)
T ss_dssp CTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEES
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeC
Confidence 57899999995 8999999999999998 9999999
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.033 Score=55.96 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=48.1
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
...|++|+|.|+ |.||..+++.|...|++|++.+++. . +.+.....++.+ .+ +.++++++
T Consensus 271 ~l~GktV~IiG~-G~IG~~~A~~lka~Ga~Viv~d~~~-------~--~~~~A~~~Ga~~-----~~---l~e~l~~a-- 330 (494)
T 3ce6_A 271 LIGGKKVLICGY-GDVGKGCAEAMKGQGARVSVTEIDP-------I--NALQAMMEGFDV-----VT---VEEAIGDA-- 330 (494)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH-------H--HHHHHHHTTCEE-----CC---HHHHGGGC--
T ss_pred CCCcCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeCCH-------H--HHHHHHHcCCEE-----ec---HHHHHhCC--
Confidence 367899999995 9999999999999999999999821 1 111112234442 12 23456666
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||.+.+.
T Consensus 331 DvVi~atgt 339 (494)
T 3ce6_A 331 DIVVTATGN 339 (494)
T ss_dssp SEEEECSSS
T ss_pred CEEEECCCC
Confidence 999988753
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.045 Score=53.16 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=53.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+.+|+|+|.| .|.+|..+++.+.+.|++|++++.+.+.... .---.++..|..|.+.+.++++.+ |
T Consensus 10 ~~~~~IlIlG-~G~lg~~la~aa~~lG~~viv~d~~~~~p~~-----------~~ad~~~~~~~~d~~~l~~~~~~~--d 75 (377)
T 3orq_A 10 KFGATIGIIG-GGQLGKMMAQSAQKMGYKVVVLDPSEDCPCR-----------YVAHEFIQAKYDDEKALNQLGQKC--D 75 (377)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCTTCTTG-----------GGSSEEEECCTTCHHHHHHHHHHC--S
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCCChhh-----------hhCCEEEECCCCCHHHHHHHHHhC--C
Confidence 4678999999 5899999999999999999999874431110 011246678999999999999886 8
Q ss_pred EEE
Q 013602 177 HVM 179 (439)
Q Consensus 177 ~Vi 179 (439)
+|.
T Consensus 76 vi~ 78 (377)
T 3orq_A 76 VIT 78 (377)
T ss_dssp EEE
T ss_pred cce
Confidence 764
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.011 Score=54.67 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=28.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhC-CCeEEEE-EC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRR-GDGVLGL-DN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~-~r 131 (439)
|++++|.|+||+|.+|+.+++.+.+. +.+++++ +|
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~ 41 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDR 41 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCC
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 56789999999999999999999876 5677775 54
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.049 Score=52.78 Aligned_cols=76 Identities=12% Similarity=0.001 Sum_probs=49.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 173 (439)
..+.+|||+||+|.+|...++.+...|++|++.++ . . +....+.+ +... ..|..+.+ .+.++..+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~-~-----~-~~~~~~~l---Ga~~-vi~~~~~~~~~~v~~~t~g- 230 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCS-P-----H-NFDLAKSR---GAEE-VFDYRAPNLAQTIRTYTKN- 230 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC-G-----G-GHHHHHHT---TCSE-EEETTSTTHHHHHHHHTTT-
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC-H-----H-HHHHHHHc---CCcE-EEECCCchHHHHHHHHccC-
Confidence 35789999999999999999999999999999874 1 1 11122222 2221 12444433 33343333
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
++|+||+++|.
T Consensus 231 ~~d~v~d~~g~ 241 (371)
T 3gqv_A 231 NLRYALDCITN 241 (371)
T ss_dssp CCCEEEESSCS
T ss_pred CccEEEECCCc
Confidence 47999999974
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.013 Score=53.83 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=46.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..|++|+|.|+++-+|+.++..|+++|++|+++.+.. ..+.+.+++. |
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t------------------------------~~L~~~~~~A--D 195 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT------------------------------KDIGSMTRSS--K 195 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHHHS--S
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc------------------------------ccHHHhhccC--C
Confidence 6899999999999999999999999999999987611 2244566666 9
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+||...|.
T Consensus 196 IVI~Avg~ 203 (276)
T 3ngx_A 196 IVVVAVGR 203 (276)
T ss_dssp EEEECSSC
T ss_pred EEEECCCC
Confidence 99988875
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.022 Score=55.42 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=50.3
Q ss_pred CCCEEEEEC-CCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH---HHHHHhhccc
Q 013602 98 NGISVLVTG-AAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM---ALLKKLFDVV 173 (439)
Q Consensus 98 ~~~~VlItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~ 173 (439)
.+.+|||.| |+|.+|...++.+...|++|++++++. .+.+....-+...+ .|..+. +.+.++..+.
T Consensus 170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~---------~~~~~~~~lGa~~~-~~~~~~~~~~~v~~~t~~~ 239 (379)
T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQ---------EQADLLKAQGAVHV-CNAASPTFMQDLTEALVST 239 (379)
T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSH---------HHHHHHHHTTCSCE-EETTSTTHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHhCCCcEE-EeCCChHHHHHHHHHhcCC
Confidence 467899997 899999999999999999999999721 11222112222211 233333 3444444444
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|+||+++|.
T Consensus 240 g~d~v~d~~g~ 250 (379)
T 3iup_A 240 GATIAFDATGG 250 (379)
T ss_dssp CCCEEEESCEE
T ss_pred CceEEEECCCc
Confidence 57999999985
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.016 Score=53.56 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=46.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..||+|+|.|.++-+|+.++..|+.+|++|+++.+.. ..+.+.++.. |
T Consensus 159 l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T------------------------------~~L~~~~~~A--D 206 (286)
T 4a5o_A 159 LYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT------------------------------RDLADHVSRA--D 206 (286)
T ss_dssp CTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHHTC--S
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC------------------------------cCHHHHhccC--C
Confidence 6899999999999999999999999999999987611 1244566666 9
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
+||...|.
T Consensus 207 IVI~Avg~ 214 (286)
T 4a5o_A 207 LVVVAAGK 214 (286)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998875
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.025 Score=55.08 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=55.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+|+|||+|+ |.+|..+++.+.+.|++|++++..... +. . ..--..+.+|..|.+.+.++++..++|
T Consensus 9 ~~~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~~~--~~-----~----~~~d~~~~~~~~d~~~l~~~~~~~~~d 76 (391)
T 1kjq_A 9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADA--PA-----M----HVAHRSHVINMLDGDALRRVVELEKPH 76 (391)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTC--GG-----G----GGSSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCCCC--ch-----h----hhccceEECCCCCHHHHHHHHHHcCCC
Confidence 35689999986 789999999999999999999874321 00 0 001235667889999999999877789
Q ss_pred EEEEc
Q 013602 177 HVMHL 181 (439)
Q Consensus 177 ~Vi~~ 181 (439)
.|+..
T Consensus 77 ~v~~~ 81 (391)
T 1kjq_A 77 YIVPE 81 (391)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 98864
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.094 Score=51.85 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=31.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
..+.+|.|.| .|++|.-++..|++.|++|++++.+
T Consensus 19 ~~m~~IaViG-lGYVGLp~A~~~A~~G~~V~g~Did 53 (444)
T 3vtf_A 19 SHMASLSVLG-LGYVGVVHAVGFALLGHRVVGYDVN 53 (444)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHhCCCcEEEEECC
Confidence 3567899998 8999999999999999999999983
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.005 Score=58.52 Aligned_cols=33 Identities=39% Similarity=0.487 Sum_probs=30.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
++ |||+||+|.+|...++.+...|++|++++++
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~ 180 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGR 180 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45 9999999999999999999999999999974
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.039 Score=52.04 Aligned_cols=82 Identities=21% Similarity=0.099 Sum_probs=53.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+++|+|.|++..+|+.+++.|+..|.+|++++|+...... +................++.+.+.+.++++ |
T Consensus 175 l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~-----ra~~la~~~~~~t~~~~t~~~~L~e~l~~A--D 247 (320)
T 1edz_A 175 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-----RGESLKLNKHHVEDLGEYSEDLLKKCSLDS--D 247 (320)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-----SCCCSSCCCCEEEEEEECCHHHHHHHHHHC--S
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHh-----HHHHHhhhcccccccccccHhHHHHHhccC--C
Confidence 688999999987789999999999999999999874110000 000000000111111114457888999888 9
Q ss_pred EEEEccccc
Q 013602 177 HVMHLAAQA 185 (439)
Q Consensus 177 ~Vi~~Ag~~ 185 (439)
+||...|..
T Consensus 248 IVIsAtg~p 256 (320)
T 1edz_A 248 VVITGVPSE 256 (320)
T ss_dssp EEEECCCCT
T ss_pred EEEECCCCC
Confidence 999988753
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.029 Score=55.76 Aligned_cols=32 Identities=31% Similarity=0.633 Sum_probs=29.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
|+|.|.| .|++|..++..|++.|++|++++|+
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~ 32 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS 32 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4799998 7999999999999999999999983
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.027 Score=56.15 Aligned_cols=35 Identities=34% Similarity=0.401 Sum_probs=32.3
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.+.||+|+|||+ |.||+.+++.|...|++|++.++
T Consensus 262 ~L~GKtVvVtGa-GgIG~aiA~~Laa~GA~Viv~D~ 296 (488)
T 3ond_A 262 MIAGKVAVVAGY-GDVGKGCAAALKQAGARVIVTEI 296 (488)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS
T ss_pred cccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcC
Confidence 368999999997 59999999999999999999987
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.014 Score=55.07 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=32.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
..+|+|.|.| .|.+|..+++.|++.|++|++.+|+.
T Consensus 19 ~~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~ 54 (310)
T 3doj_A 19 SHMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTL 54 (310)
T ss_dssp CCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred ccCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 5668999998 69999999999999999999999954
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.035 Score=53.32 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=67.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCC---------------CCCChhHHHHHHHhhh--cCC--eEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFN---------------DYYDPSLKKARQALLE--RSG--IFIV 156 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~---------------~~~~~~~~~~~~~~~~--~~~--v~~~ 156 (439)
+...+|+|.| .|++|.++++.|+..|. +++++|.+. +-+..... ...+.+. .+. +..+
T Consensus 34 L~~~~VlivG-~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~-~~~~~l~~lnp~v~v~~~ 111 (346)
T 1y8q_A 34 LRASRVLLVG-LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAE-ASLERAQNLNPMVDVKVD 111 (346)
T ss_dssp HHTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHH-HHHHHHHHTCTTSEEEEE
T ss_pred HhCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHH-HHHHHHHhHCCCeEEEEE
Confidence 4567999999 59999999999999997 777776432 11111111 1111111 233 4555
Q ss_pred EcccCCHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 157 ~~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
..++.+ ...++++++ |+||.+. ++. ..-..+.++|.+.+. .+|...+.+.+|
T Consensus 112 ~~~~~~--~~~~~~~~~--dvVv~~~---------d~~--------~~r~~ln~~~~~~~i--p~i~~~~~G~~G 163 (346)
T 1y8q_A 112 TEDIEK--KPESFFTQF--DAVCLTC---------CSR--------DVIVKVDQICHKNSI--KFFTGDVFGYHG 163 (346)
T ss_dssp CSCGGG--CCHHHHTTC--SEEEEES---------CCH--------HHHHHHHHHHHHTTC--EEEEEEEEBTEE
T ss_pred ecccCc--chHHHhcCC--CEEEEcC---------CCH--------HHHHHHHHHHHHcCC--CEEEEeecccEE
Confidence 555543 234566666 9999764 222 123456677888774 888887766665
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.019 Score=53.41 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
+|+|.|.|+||.+|..+++.|.+.|++|++.+|
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r 43 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEI 43 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 469999999999999999999999999999988
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 439 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 8e-78 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 2e-76 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-71 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-67 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 2e-67 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 2e-66 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 3e-61 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 1e-60 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 1e-56 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-55 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 8e-55 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 9e-54 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 5e-53 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 4e-52 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 4e-49 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-44 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 1e-36 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 5e-28 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 3e-27 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 7e-23 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 2e-20 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 3e-18 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 1e-16 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 2e-16 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 2e-15 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 4e-15 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 3e-10 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 4e-07 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 3e-04 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 8e-04 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 0.001 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 0.002 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 0.003 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 243 bits (622), Expect = 8e-78
Identities = 80/353 (22%), Positives = 141/353 (39%), Gaps = 44/353 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
+L+TG AGF+G+ V + + D V+ +D Y +L+ + E + DI
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT--YAGNLESLSD-ISESNRYNFEHADI 59
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D A + ++F+ VMHLAA++ V ++ P +++ +NI G +LLEV +
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALG 119
Query: 221 --------IVWASSSSVYG---------LNTKVPFSEKDRTDQPASLYAATKKAGEEIAH 263
S+ VYG + +P + P+S Y+A+K + + +
Sbjct: 120 EDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 264 TYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYI 323
+ YGL YGP+ P+ + L K +PI+ G RD+ Y+
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDWLYV 236
Query: 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR 383
+D + + + +N+G + D+V + LL +
Sbjct: 237 EDHARALHMVVTEGKAG-------------ETYNIGGHNEKKNLDVVFTICDLLDEIVPK 283
Query: 384 NI-------MKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
R G + RELG+KP ++G++K V WYL+
Sbjct: 284 ATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLA 336
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 238 bits (608), Expect = 2e-76
Identities = 72/336 (21%), Positives = 136/336 (40%), Gaps = 37/336 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+TG AGFVG+H++ L G V +DNF +++ + ++ D+
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEH----WIGHENFELINHDVV 59
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
+ ++ + HLA+ A M NP + +N G +++L + K + +
Sbjct: 60 EPLYIE-------VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR--L 110
Query: 222 VWASSSSVYGLNTKVPFSEKDRTD----QPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 277
+ AS+S VYG P SE P + Y K+ E + + Y G+ + R
Sbjct: 111 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 170
Query: 278 FFTVYGPWGRPDMAYFF--FTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
F +GP + F L + + ++ G+ R F Y+ D+V G +A ++
Sbjct: 171 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGLVALMN 227
Query: 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVP 395
+ S NLGN + + +++ L+ ++ + D
Sbjct: 228 SNVSSP--------------VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS-EAQDDPQ 272
Query: 396 FTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
+I A+ LG++P L+ GL K + ++
Sbjct: 273 KRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 308
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 225 bits (575), Expect = 3e-71
Identities = 79/338 (23%), Positives = 138/338 (40%), Gaps = 23/338 (6%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN--DYYDPSLKKARQALLERS-GIFIVEG 158
+LVTG AGF+G+H L + D D + +A A ++ + V G
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
DI D L ++ ++H AA++ V ++ + + +N+ G +LL+ +A
Sbjct: 63 DIRDAGL--LARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 219 PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRF 278
+V S++ VYG ++E + P S YAA+K + +A Y+ YGL + R
Sbjct: 121 R-VVHVSTNQVYGSIDSGSWTESSPLE-PNSPYAASKAGSDLVARAYHRTYGLDVRITRC 178
Query: 279 FTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338
YGP+ P+ F ++L+ ++P++ G R++ + DD +G L
Sbjct: 179 CNNYGPYQHPEKLIPLFVTNLLDGGTLPLYG---DGANVREWVHTDDHCRGIALVLAGGR 235
Query: 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTH 398
++++G + +L IL L R G
Sbjct: 236 AG-------------EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYS 282
Query: 399 ANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGGKK 436
+ +RELGY+P GL + VRWY +
Sbjct: 283 LDGGKIERELGYRPQVSFADGLARTVRWYRENRGWWEP 320
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 217 bits (552), Expect = 1e-67
Identities = 89/347 (25%), Positives = 145/347 (41%), Gaps = 29/347 (8%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
VLVTG +G++G+H L + G V+ LDN + L + L VEGDI
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER--LGGKHPTFVEGDIR 60
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
+ AL+ ++ + V+H A V ++Q P Y +N+ G + L+ + AN +
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NF 119
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTGLRFFT 280
+++SS++VYG K+P+ E T P S Y +K E+I S+ LR+F
Sbjct: 120 IFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 281 VYGPWGRPDMAY-----------FFFTRDILNRKSIPIFESPDH---GTVARDFTYIDDI 326
G DM + + R S+ IF + GT RD+ ++ D+
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL 239
Query: 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM 386
G + A++ G ++NLG V D+V+ + +
Sbjct: 240 ADGHVVAMEKLANKPGV----------HIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 387 KLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433
R GD+P A+ S A REL ++ T L + W + G
Sbjct: 290 PR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQG 335
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 216 bits (551), Expect = 2e-67
Identities = 67/365 (18%), Positives = 116/365 (31%), Gaps = 50/365 (13%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKK--ARQALLERSGIFIVEGD 159
L+TG G G++++ L +G V G+ ++ + + GD
Sbjct: 4 ALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGD 63
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
++D + L ++ V V +L A + V + ++P + G + LLE + +
Sbjct: 64 LSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEK 123
Query: 220 A--IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 277
AS+S +YGL ++P E P S YA K I Y YG+
Sbjct: 124 KTRFYQASTSELYGLVQEIPQKETTPFY-PRSPYAVAKLYAYWITVNYRESYGMYACNGI 182
Query: 278 FFTVYGPWGRPDMAYFFFTRDILN-RKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336
F P TR I N + + + RD+ + D VK L
Sbjct: 183 LFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQ 242
Query: 337 AEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM---------- 386
+ F + V V + L +K +
Sbjct: 243 EQP--------------EDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVS 288
Query: 387 --------------------KLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+ R +V + + A +LG+KP L+ + + V
Sbjct: 289 VTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVAN 348
Query: 427 YLSYY 431
L
Sbjct: 349 DLEAA 353
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 214 bits (544), Expect = 2e-66
Identities = 91/338 (26%), Positives = 150/338 (44%), Gaps = 24/338 (7%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
L+TG AGF+G+++ L + V+GLDNF + +L + R + E+ +
Sbjct: 19 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGD 78
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
L +V+H AA V ++ +P + +NI G +++L ++A Q
Sbjct: 79 IRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQS-F 137
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
+A+SSS YG + +P E P S YA TK E A ++ YG S GLR+F V
Sbjct: 138 TYAASSSTYGDHPGLPKVEDTIGK-PLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNV 196
Query: 282 YGPWGRPDMAYFF----FTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337
+G P+ AY +T ++ + I G +RDF YI++ V+ L A
Sbjct: 197 FGRRQDPNGAYAAVIPKWTSSMIQGDDVYING---DGETSRDFCYIENTVQANLLAA--- 250
Query: 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKA----KRNIMKLPRNGD 393
A+ +V+N+ ++ L L L + + + R GD
Sbjct: 251 --------TAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGD 302
Query: 394 VPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
V + A+IS A + LGY P D+ G+ + WY+ +
Sbjct: 303 VRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMFL 340
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 200 bits (509), Expect = 3e-61
Identities = 85/343 (24%), Positives = 132/343 (38%), Gaps = 23/343 (6%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
VLVTG AG++G+H L G + DN ++ S+ R +L + I E D+
Sbjct: 4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVA--RLEVLTKHHIPFYEVDLC 61
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D L+K+F V+H A V + Q P Y H+NI G V LLE+ + N
Sbjct: 62 DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSK-F 120
Query: 222 VWASSSSVYGLNTKVPFSEK---DRTDQPASLYAATKKAGEEIAHTYN--HIYGLSLTGL 276
V++SS++VYG T+ P + P + Y TK A E I + L
Sbjct: 121 VFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAIL 180
Query: 277 RFFTVY----------GPWGRPD-MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDD 325
R+F P G P+ + + + R+ + IF +RD T I D
Sbjct: 181 RYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFG---DDYDSRDGTPIRD 237
Query: 326 IVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNI 385
+ A R +NLG+ V ++ + + +
Sbjct: 238 YIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKV 297
Query: 386 MKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYL 428
R GDV A A+REL ++ ++ K +W
Sbjct: 298 TG-RRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTT 339
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 199 bits (506), Expect = 1e-60
Identities = 61/342 (17%), Positives = 116/342 (33%), Gaps = 13/342 (3%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLER---SGIFIVEG 158
L+TG G G++++ L +G V G+ + ++ + + + + G
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYG 63
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
D+ D L K+ + V T + +L AQ+ V+ + + G + LL+ K
Sbjct: 64 DLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLI 123
Query: 219 PA--IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGL 276
+ AS+S +YG ++P E P S Y A K I + Y L
Sbjct: 124 NSVKFYQASTSELYGKVQEIPQKETTPFY-PRSPYGAAKLYAYWIVVNFREAYNLFAVNG 182
Query: 277 RFFTVYGPWGRPDMAYFFFTRDILNR-KSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
F P + +R + S + RD+ + D V+ L
Sbjct: 183 ILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQ 242
Query: 336 TAEKSTGSGGKK-----RGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP- 389
E R + ++G T + + K +
Sbjct: 243 NDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYY 302
Query: 390 RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
R +V F + + A+++L +KP +++ V +
Sbjct: 303 RPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELM 344
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 187 bits (476), Expect = 1e-56
Identities = 62/338 (18%), Positives = 121/338 (35%), Gaps = 41/338 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V + G G VG+ + L++RGD L L + E ++
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLL 41
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYA-MQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D + F V AA+ G A P +++ N+ +++ +
Sbjct: 42 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNK- 100
Query: 221 IVWASSSSVYGLNTKVPFSEKDRT----DQPASLYAATKKAGEEIAHTYNHIYGLSLTGL 276
+++ SS +Y K P +E + + YA K AG ++ +YN YG +
Sbjct: 101 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 160
Query: 277 RFFTVYGPWGRPDMAYFFFTRDILNRKSI------PIFESPDHGTVARDFTYIDDIVKGC 330
+YGP + +L R P GT R+F ++DD+
Sbjct: 161 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAAS 220
Query: 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR 390
+ ++ A + + + L N+G + +L + +++ K + +
Sbjct: 221 IHVMELAHEVW----LENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA-SK 275
Query: 391 NGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYL 428
P +++ +LG+ L+ GL +W+L
Sbjct: 276 PDGTPRKLLDVTRL-HQLGWYHEISLEAGLASTYQWFL 312
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 185 bits (470), Expect = 2e-55
Identities = 77/356 (21%), Positives = 138/356 (38%), Gaps = 43/356 (12%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDG--VLGLDNFNDYYDPSLKKARQALLERSGIFIVEG 158
+++VTG AGF+G++ + V LD KA + + +V G
Sbjct: 4 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG----NKANLEAILGDRVELVVG 59
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
DI D L+ KL ++H AA++ ++ +P+ ++H+N G +LLE + + +
Sbjct: 60 DIADAELVDKLAAK--ADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR 117
Query: 219 PAIVWASSSSVYG------------LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYN 266
S+ VYG F+ + + P+S Y++TK A + I +
Sbjct: 118 F--HHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN-PSSPYSSTKAASDLIVKAWV 174
Query: 267 HIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDI 326
+G+ T YGP+ + +IL ++ G RD+ + +D
Sbjct: 175 RSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY---GEGKNVRDWIHTNDH 231
Query: 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM 386
G A L G + L ILE++ + K + +
Sbjct: 232 STGVWAILTKGRMGETYLIGADGEKNNK------------EVLELILEKMGQPKDAYDHV 279
Query: 387 KLPRNGDVPFTHANISLAQRELGYKPT-TDLQTGLKKFVRWYL---SYYAGGKKAA 438
R G + S + ELG+ P TD GL++ ++WY ++ K+A
Sbjct: 280 T-DRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQDWWKAEKEAV 334
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 183 bits (465), Expect = 8e-55
Identities = 95/346 (27%), Positives = 149/346 (43%), Gaps = 31/346 (8%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKK----ARQALLERSGIFIVE 157
VLVTG AG++G+H L G + +DNF++ + R L + E
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217
DI D L++LF SF V+H A V ++Q P Y N+ G + LLE+ K
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV 124
Query: 218 QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTGL 276
+ +V++SS++VYG +P E T + Y +K EE+ + L
Sbjct: 125 KN-LVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLL 183
Query: 277 RFFTVYGP----------WGRPDM-AYFFFTRDILNRKSIPIFESPD---HGTVARDFTY 322
R+F G G P+ + I R+++ +F + GT RD+ +
Sbjct: 184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIH 243
Query: 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK 382
+ D+ KG +AAL ++ G R++NLG + V +V +E+ K
Sbjct: 244 VVDLAKGHIAALRKLKEQCGC----------RIYNLGTGTGYSVLQMVQAMEKASGKKIP 293
Query: 383 RNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYL 428
++ R GDV +AN SLAQ ELG+ L + RW
Sbjct: 294 YKVVA-RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQK 338
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 180 bits (456), Expect = 9e-54
Identities = 68/334 (20%), Positives = 112/334 (33%), Gaps = 22/334 (6%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
LVTG G G +++ L +G V GL + L I +GD+
Sbjct: 3 ALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRE---LGIEGDIQYEDGDMA 59
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D +++ V +LAAQ+ V + P + + G+ LLE + +P+
Sbjct: 60 DACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRF 119
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
AS+S ++GL E S Y K G I Y +GL + F
Sbjct: 120 YQASTSEMFGLIQAERQDENTPFYP-RSPYGVAKLYGHWITVNYRESFGLHASSGILFNH 178
Query: 282 YGPWGRPDMAYFFFTRDILNRKS-IPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKS 340
P + T + K + RD+ + D V+ L
Sbjct: 179 ESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQ----- 233
Query: 341 TGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNI---MKLPRNGDVPFT 397
+ + + + V D+ I + + + + R +V
Sbjct: 234 ---------QDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVL 284
Query: 398 HANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
N + AQR LG+KP T L ++ V L
Sbjct: 285 LGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRV 318
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 179 bits (455), Expect = 5e-53
Identities = 62/338 (18%), Positives = 123/338 (36%), Gaps = 35/338 (10%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+ +TGA GF+ +H++ LK G V+ D + + + D+
Sbjct: 18 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE---------FHLVDLR 68
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
M K+ + V + A G+ + N + +++N +++E +
Sbjct: 69 VMENCLKVTEGVDHVFNLA-ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI-KRF 126
Query: 222 VWASSSSVYGLNTKV------PFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTG 275
+ASS+ +Y ++ +P + K A EE+ YN +G+
Sbjct: 127 FYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRI 186
Query: 276 LRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH--GTVARDFTYIDDIVKGCLAA 333
RF +YGP+G + G R FT+ID+ V+G L
Sbjct: 187 GRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRL 246
Query: 334 LDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGD 393
+ + N+G+ V ++++ ++ + K I +P
Sbjct: 247 TKSDFR--------------EPVNIGSDEMVSMNEMAEMVLSFEEKKLP--IHHIPGPEG 290
Query: 394 VPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
V +++ +L + +LG+ P L+ GL+ W
Sbjct: 291 VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQI 328
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 176 bits (447), Expect = 4e-52
Identities = 69/339 (20%), Positives = 121/339 (35%), Gaps = 23/339 (6%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKK---ARQALLERSGIFIVEG 158
L+TG G G++++ L +G V GL + ++ + ++ + +
Sbjct: 4 ALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYA 63
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
D+ D + L++ DV+ V +LAAQ+ V + + P+ G + LLE ++
Sbjct: 64 DLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTID 123
Query: 219 PAIVW---ASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTG 275
+ SS +T P SE P S YAA+K A Y YGL
Sbjct: 124 SGRTVKYYQAGSSEMFGSTPPPQSETTPFH-PRSPYAASKCAAHWYTVNYREAYGLFACN 182
Query: 276 LRFFTVYGPWGRPDMAYFFFTRD---ILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLA 332
F P + TR I +F + +RD+ + D V+
Sbjct: 183 GILFNHESPRRGENFVTRKITRALGRIKVGLQTKLF--LGNLQASRDWGFAGDYVEAMWL 240
Query: 333 ALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNG 392
L +++ + G+T + L K + + + R
Sbjct: 241 MLQ----------QEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEID-QRYFRPA 289
Query: 393 DVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
+V + S A+ LG+KP + +K V L
Sbjct: 290 EVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELA 328
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 168 bits (425), Expect = 4e-49
Identities = 65/349 (18%), Positives = 124/349 (35%), Gaps = 39/349 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+TG GF+G+++++ +G ++ DN + L V GDI
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA---TDNLHWLSSLGNFEFVHGDIR 59
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
+ + +L HLA Q + ++ NP N+ G ++LLE + N I
Sbjct: 60 NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNI 119
Query: 222 VWASSSSVYGLNTKVPFSEKDRTD---------------QPASLYAATKKAGEEIAHTYN 266
+++S++ VYG + ++E + S Y +K A ++ Y
Sbjct: 120 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 179
Query: 267 HIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL--------NRKSIPIFESPDHGTVAR 318
I+GL+ R ++YG + K I +G R
Sbjct: 180 RIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTIS---GNGKQVR 236
Query: 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLK 378
D + +D++ AL K G + + + +L +LE
Sbjct: 237 DVLHAEDMISLYFTALANVSKIRG---------NAFNIGGTIVNSLSLLELFKLLEDYCN 287
Query: 379 VKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
+ + + + R D A+I + + P + G++K W
Sbjct: 288 IDMRFTNLPV-RESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWT 335
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 158 bits (398), Expect = 1e-44
Identities = 71/384 (18%), Positives = 125/384 (32%), Gaps = 58/384 (15%)
Query: 102 VLVTGAAGFVGTHVSAAL-KRRGDGVLGLDNFNDYYDPSLKKARQALLERS--------- 151
VLV G AG++G+H AL + V+ +D+ + S + + R
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 152 -----GIFIVEGDINDMALLKKL------FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHS 200
+ GD+ + L + D V ++ N+ V
Sbjct: 65 PWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGI 124
Query: 201 NIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEE 260
LL C + + ++ ++T + + P S Y +K E
Sbjct: 125 LRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAER 184
Query: 261 IAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFF-------------------------F 295
+ YG+ LR+F G D+ +
Sbjct: 185 MIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTI 244
Query: 296 TRDILNRKSIPIFESPD---HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQ 352
D K +PIF + GT RD+ ++ D+ + ALD EK + K
Sbjct: 245 HEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFS-- 302
Query: 353 LRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKP 412
VFNLG + V +++ + + R GD + A A+ LG+KP
Sbjct: 303 --VFNLGTSRGYSVREVIEVARKTTGHPIPVRECG-RREGDPAYLVAASDKAREVLGWKP 359
Query: 413 TTDLQTGLKK-FVRWYLSY---YA 432
D + + ++ ++ YA
Sbjct: 360 KYDTLEAIMETSWKFQRTHPNGYA 383
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 135 bits (339), Expect = 1e-36
Identities = 65/347 (18%), Positives = 108/347 (31%), Gaps = 22/347 (6%)
Query: 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVE 157
G V VTG GF G +S L+ G V G + AR A G+
Sbjct: 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVA----DGMQSEI 62
Query: 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217
GDI D L + V H+AAQ VR + P +N+ G V LLE ++
Sbjct: 63 GDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG 122
Query: 218 QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNH---------I 268
A+V +S Y + ++ Y+ +K E + +Y +
Sbjct: 123 VKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQ 182
Query: 269 YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVK 328
+G ++ +R V G + I +P +
Sbjct: 183 HGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYL 242
Query: 329 GCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL 388
L T G + + A +
Sbjct: 243 LLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMV---------KYWGEGASWQLDGN 293
Query: 389 PRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGGK 435
+ + + S A+ +LG+ P +L T L+ V W+ ++ +G
Sbjct: 294 AHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGTD 340
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 112 bits (279), Expect = 5e-28
Identities = 63/369 (17%), Positives = 113/369 (30%), Gaps = 37/369 (10%)
Query: 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF-NDYYDPSLKK-------------AR 144
G V+V G G+ G + L ++ V +DN +D L +R
Sbjct: 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60
Query: 145 QALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIA- 203
L I + GDI D L + F V+H Q Y+M + + V++
Sbjct: 61 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 120
Query: 204 --GLVSLLEVCKNANPQPAIVWASSSSV------------YGLNTKVPFSEKDRTDQPAS 249
G +++L K + +V + + Q +S
Sbjct: 121 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 180
Query: 250 LYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFE 309
Y +K +G+ T L VYG + +
Sbjct: 181 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240
Query: 310 SPDHGTVARD----FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN--TSP 363
+ A +G L DT + + + RVFN S
Sbjct: 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSV 300
Query: 364 VPVSDLVSILERLLKVKAKRNIMKLPRN-GDVPFTHANISLAQRELGYKPTTDLQTGLKK 422
++ LV+ L + K+ + PR + + +A + ELG +P + L
Sbjct: 301 NELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL-MELGLEPHYLSDSLLDS 359
Query: 423 FVRWYLSYY 431
+ + + +
Sbjct: 360 LLNFAVQFK 368
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 109 bits (272), Expect = 3e-27
Identities = 58/356 (16%), Positives = 106/356 (29%), Gaps = 46/356 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ G GF+G H++ L R V GLD +D L VEGDI
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPH--------FHFVEGDI 54
Query: 161 NDMALLKKLFD---VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217
+ + + V V R ++ N+ + ++ K
Sbjct: 55 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIF 114
Query: 218 QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLT--- 274
S + ++P +Y+ +K+ + + Y GL T
Sbjct: 115 PSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFR 174
Query: 275 -----GLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329
G R + A +++ I + D G R FT I D ++
Sbjct: 175 PFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTDIRDGIEA 231
Query: 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL- 388
++ A + + + +L +L + R+
Sbjct: 232 LYRIIENAGNRCDGE---------IINIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 282
Query: 389 -------------PRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431
DV +I A R L ++P D+Q + + + ++L
Sbjct: 283 AGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 338
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 96.2 bits (237), Expect = 7e-23
Identities = 48/330 (14%), Positives = 93/330 (28%), Gaps = 29/330 (8%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
++VTG AGF+G+++ AL +G +L +DN D + +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD----------LNIADYM 51
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ L ++ F V + + + Y+ N L P
Sbjct: 52 DKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPF 111
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+ +S+++ G + S + Y+ +
Sbjct: 112 LYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 171
Query: 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKS 340
+ MA F + RDF Y+ D+ L
Sbjct: 172 GPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWF------- 224
Query: 341 TGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP---RNGDVPFT 397
+FNLG + K K + + P + FT
Sbjct: 225 -------LENGVSGIFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRYQAFT 276
Query: 398 HANISLAQRELGYKPTTDLQTGLKKFVRWY 427
A+++ + KP + G+ +++ W
Sbjct: 277 QADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 89.9 bits (221), Expect = 2e-20
Identities = 50/349 (14%), Positives = 89/349 (25%), Gaps = 41/349 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
VLVTGA GFV +HV L G V G +L+K A V D+
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLA-NLQKRWDAKYPGRFETAVVEDML 72
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
++ + + V + V I G ++ L
Sbjct: 73 KQGAYDEVIKGAAGVAHIA-----SVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRF 127
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQ-------------------PASLYAATKKAGEEIA 262
V SS+ + +YAA+K E A
Sbjct: 128 VLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAA 187
Query: 263 --HTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320
+ +L + G P+ + +++ + + + + +
Sbjct: 188 WKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA-LMPPQYY 246
Query: 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVK 380
DI L L + G + +++ +L K
Sbjct: 247 VSAVDIGLLHLGCLVLPQIERR-------------RVYGTAGTFDWNTVLATFRKLYPSK 293
Query: 381 AKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
F A + LG ++ +K V +
Sbjct: 294 TFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 342
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 82.9 bits (203), Expect = 3e-18
Identities = 49/350 (14%), Positives = 95/350 (27%), Gaps = 75/350 (21%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+ GA G++G HV+ A G L + S K + SG IV G I+
Sbjct: 6 ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID 65
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D + V + V + + NI A +
Sbjct: 66 DH-----------ASLVEAVKNVDVVISTVGSLQIESQVNI----------IKAIKEVGT 104
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V S +G + + + G+ T +
Sbjct: 105 VKRFFPSEFGNDVDNVHAVEPAKSVFEVKA---------KVRRAIEAEGIPYTYVSSNCF 155
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKST 341
G + R + + F +DI + A+D
Sbjct: 156 AGYFLRSLAQAGLTAPPRDKVVILGDGNARVV------FVKEEDIGTFTIKAVDDPRTLN 209
Query: 342 GSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM------------KLP 389
+ ++ + + +++LV++ E+ + ++ + P
Sbjct: 210 KT-----------LYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFP 258
Query: 390 RNGDVPFTHAN---------------ISLAQRELGYKPTTDLQTGLKKFV 424
N + +H+ + +Q K TT + L FV
Sbjct: 259 ANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTT-VDEYLSNFV 307
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 77.2 bits (188), Expect = 1e-16
Identities = 40/281 (14%), Positives = 74/281 (26%), Gaps = 40/281 (14%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
VLVTGA+G G V LK D + + GDI
Sbjct: 6 VLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGE--------ADVFIGDIT 57
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D + F + ++ L + +P + Q
Sbjct: 58 DADSINPAFQGI--DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQ 115
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIA-HTYNHIYGLSLTGLRFFT 280
+ A+ + V D P + + Y G T +R
Sbjct: 116 IDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGG 175
Query: 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKS 340
+ G + + + + + D+ + C+ AL E
Sbjct: 176 LLDKEG--------------GVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEE-- 219
Query: 341 TGSGGKKRGRAQLRVFNLGN---TSPVPVSDLVSILERLLK 378
A+ + F+LG+ + P D ++ ++
Sbjct: 220 ----------AKNKAFDLGSKPEGTSTPTKDFKALFSQVTS 250
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 77.5 bits (189), Expect = 2e-16
Identities = 36/350 (10%), Positives = 86/350 (24%), Gaps = 70/350 (20%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
VL+ G G++G + A G L + K ++ G ++E ++
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNID-KVQMLLYFKQLGAKLIEASLD 64
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D + A + + +I + L+E K A
Sbjct: 65 DH-------------QRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRF 111
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
+ + F + A + + + T +
Sbjct: 112 LPSE------------FGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMF 159
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKST 341
G + G V + DD+ + ++D +
Sbjct: 160 AGYFAGSLAQLDGHM-----MPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLN 214
Query: 342 GSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK------------LP 389
+ ++ + + +++ I ERL + + +
Sbjct: 215 KT-----------MYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDFLADMKDKSYE 263
Query: 390 RNGDVPFTH--------ANISLAQREL-------GYKPTTDLQTGLKKFV 424
+ N + + K T + + L+++V
Sbjct: 264 EKIVRCHLYQIFFRGDLYNFEIGPNAIEATKLYPEVKYVT-MDSYLERYV 312
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 74.5 bits (181), Expect = 2e-15
Identities = 46/330 (13%), Positives = 92/330 (27%), Gaps = 58/330 (17%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+TGA G +G + LK + V+ D + + DI
Sbjct: 4 ILITGANGQLGREIQKQLKGKNVEVIPTD------------------------VQDLDIT 39
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
++ + K F+ V++ AA V + + N G + + I
Sbjct: 40 NVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKN--LAAAAYSVGAEI 97
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V S+ V+ K P +E D + ++ + + +R +
Sbjct: 98 VQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGEN-----FVKALNPKYYIVRTAWL 152
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKS- 340
YG + + + T D+ + L +D
Sbjct: 153 YGDGNNFVKTMINLGK---THDELKVV-----HDQVGTPTSTVDLARVVLKVIDEKNYGT 204
Query: 341 ---TGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFT 397
T G + +F L + AKR P+ +
Sbjct: 205 FHCTCKGICSWYDFAVEIFRLTGIDV----KVTPCTTEEFPRPAKR-----PKY-----S 250
Query: 398 HANISLAQRELGYKPTTDLQTGLKKFVRWY 427
+ + G + + LK+++
Sbjct: 251 VLRNYMLELTTGDIT-REWKESLKEYIDLL 279
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 73.4 bits (178), Expect = 4e-15
Identities = 48/329 (14%), Positives = 92/329 (27%), Gaps = 37/329 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+ G G VG + +L G+ ++ LD + + GD +
Sbjct: 3 ILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKEF--------------------CGDFS 41
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
+ + + + +++ AA V A P N +
Sbjct: 42 NPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNAT--SVEAIAKAANETGAWV 99
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V S+ V+ +P+ E D P ++Y TK AGE+ + +
Sbjct: 100 VHYSTDYVFPGTGDIPWQETDA-TSPLNVYGKTKLAGEKALQDNCPKHL-IFRTSWVYAG 157
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKST 341
G M R L+ + +A + +
Sbjct: 158 KGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVA 217
Query: 342 GSGGKKRGRAQLRVFNLGNTS-PVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHAN 400
G A L + +++L ++ A R P N + N
Sbjct: 218 GGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASR-----PGN-----SRLN 267
Query: 401 ISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
QR + G+K+ + +
Sbjct: 268 TEKFQRNFDLIL-PQWELGVKRMLTEMFT 295
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 59.3 bits (142), Expect = 3e-10
Identities = 36/290 (12%), Positives = 61/290 (21%), Gaps = 51/290 (17%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+ V GA G G + G V + + L + + +G +
Sbjct: 6 IAVVGATGRQGASLIRVAAAVGHHVRAQVH-----SLK-GLIAEELQAIPNVTLFQGPLL 59
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
+ L G A N S IA L + K A
Sbjct: 60 NNVPLMD-------------TLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHY 106
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
+++S Y GL T +
Sbjct: 107 IYSSMPDHSLYGPWPAVPMWAPKFTV---------------ENYVRQLGLPSTFVYAGIY 151
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL-DTAEKS 340
+ F PD D+ L D +K
Sbjct: 152 NNNFTSLPYPLFQMELMPDGTFEWHAPFDPD--IPLPWLDAEHDVGPALLQIFKDGPQKW 209
Query: 341 TGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR 390
G L + + + R L + +++P+
Sbjct: 210 NG-----------HRIALT-FETLSPVQVCAAFSRALNRRVT--YVQVPK 245
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 4e-07
Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 25/199 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+ + GA G G A + G V L + R +V GD+
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS---------RLPSEGPRPAHVVVGDVL 56
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
A + K V+ L N S G +++ K +
Sbjct: 57 QAADVDKTVA--GQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDK-V 106
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTY-NHIYGLSLTGLRFFT 280
V +S+ + TKVP + TD ++ +++G + HI LTG T
Sbjct: 107 VACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTVT 166
Query: 281 VYGPWG-----RPDMAYFF 294
+ G + D+ +F
Sbjct: 167 LDGRGPSRVISKHDLGHFM 185
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (92), Expect = 3e-04
Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 9/137 (6%)
Query: 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVE 157
NG LVTGAA +G + AL +G V +D +N K A E ++
Sbjct: 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVD-WNLEAGVQCKAALHEQFEPQKTLFIQ 60
Query: 158 GDINDMALLKKLFDVV--SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVC--- 212
D+ D L+ F V F + L AGV +N + N+ ++S +
Sbjct: 61 CDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDY 119
Query: 213 --KNANPQPAIVWASSS 227
K + I+ SS
Sbjct: 120 MSKQNGGEGGIIINMSS 136
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 38.4 bits (89), Expect = 8e-04
Identities = 33/214 (15%), Positives = 66/214 (30%), Gaps = 17/214 (7%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
++TG +G ++ G V+ +D +KA +++ I + D +
Sbjct: 9 AIITGGTLGIGLAIATKFVEEGAKVMITGRHSD----VGEKAAKSVGTPDQIQFFQHDSS 64
Query: 162 DMALLKKLFDVV--SFTHVMHLAAQAGVRYAMQ----NPNSYVHSNIAGLVSLLEVCKNA 215
D KLFD +F V L AG+ + L + +
Sbjct: 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLG 124
Query: 216 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTG 275
+ + +N A Y A+K A ++ + L
Sbjct: 125 IQR---MKNKGLGASIINMSSIEGFVGDPSLGA--YNASKGAVRIMSKSAALDCALKDYD 179
Query: 276 LRFFTVYGPWGRPDMAYFFFTRD--ILNRKSIPI 307
+R TV+ + + + + + R P+
Sbjct: 180 VRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPM 213
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 0.001
Identities = 26/238 (10%), Positives = 49/238 (20%), Gaps = 39/238 (16%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
SV + GA+G G + + +G + L+ R + E
Sbjct: 16 SVFILGASGETGRVLLKEILEQGLFS-----------------KVTLIGRRKLTFDEEAY 58
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
++ F+ + G E +
Sbjct: 59 KNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA----------EGFVRVDRDYV 108
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+ A + G S K LY K E + R
Sbjct: 109 LKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRY---SVFRPGV 165
Query: 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338
+ + F S + + +V+ L +
Sbjct: 166 LLCDRQESRPGEWLV---------RKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPR 214
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 37.4 bits (85), Expect = 0.002
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGV 126
VL+ GA G G H+ +
Sbjct: 5 VLLAGATGLTGEHLLDRILSEPTLA 29
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 36.9 bits (85), Expect = 0.003
Identities = 31/256 (12%), Positives = 71/256 (27%), Gaps = 26/256 (10%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V++TG++ +G + + G V D + + ++ +A + I V D+
Sbjct: 7 VIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVT 66
Query: 162 DMALLKKLFD-----------VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSL-L 209
+ + + + +V+ A ++ N ++ +
Sbjct: 67 EASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQ 126
Query: 210 EVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY 269
+ ++ + SS V G + YA K A ++
Sbjct: 127 KTKEHLIKTKGEIVNVSSIVAGP----------QAHSGYPYYACAKAALDQYTRCTAIDL 176
Query: 270 GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329
G+R +V + + K S ++I
Sbjct: 177 I--QHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANI 234
Query: 330 C--LAALDTAEKSTGS 343
LA + + G
Sbjct: 235 IVFLADRNLSSYIIGQ 250
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 439 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.95 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.95 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.94 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.93 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.93 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.93 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.93 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.93 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.92 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.92 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.92 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.92 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.92 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.92 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.92 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.92 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.92 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.92 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.92 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.92 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.91 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.91 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.91 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.91 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.91 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.91 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.91 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.91 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.91 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.91 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.9 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.9 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.9 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.9 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.9 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.9 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.9 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.9 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.9 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.9 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.9 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.9 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.9 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.89 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.89 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.88 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.88 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.88 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.88 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.88 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.88 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.87 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.87 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.86 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.86 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.86 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.86 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.85 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.85 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.84 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.84 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.83 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.82 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.82 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.8 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.8 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.79 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.76 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.75 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.75 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.74 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.7 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.66 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.36 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.36 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.27 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.17 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.09 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.04 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.98 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.96 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.94 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.91 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.91 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.85 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.82 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.77 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.7 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.7 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.68 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.65 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.59 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.59 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.58 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.55 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.53 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.53 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.52 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.46 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.4 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.37 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.33 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.32 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.3 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.2 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.19 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.19 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.17 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.16 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.15 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.07 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.03 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.0 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.97 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.96 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.88 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.71 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.7 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.69 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.68 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.68 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.58 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.56 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.51 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.48 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.44 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.43 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.43 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.33 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.23 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.23 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.2 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.16 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.16 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.14 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.12 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.08 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.02 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.97 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.92 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.92 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.89 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.86 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.82 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.71 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.71 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.68 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.67 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 95.67 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.66 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.64 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.57 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.51 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.49 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.48 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.45 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.4 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.37 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 95.28 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.2 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.15 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.14 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.13 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.13 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.0 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 94.92 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.88 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.81 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 94.81 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.8 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.76 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.65 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.54 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 94.52 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 94.47 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.44 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.33 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.23 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.22 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 94.19 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.19 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.19 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.17 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.17 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 94.05 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.97 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 93.86 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 93.81 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 93.79 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 93.73 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 93.71 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.53 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.36 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 93.26 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 93.24 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.24 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 93.21 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 93.08 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.92 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 92.73 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 92.63 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.52 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 92.48 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 92.33 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 92.22 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 91.91 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 91.77 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 91.7 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 91.69 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 91.58 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 91.58 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 91.57 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 91.41 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 91.36 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 91.32 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 91.31 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 91.21 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.13 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 90.99 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 90.87 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 90.69 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 90.62 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 90.27 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 90.15 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 90.05 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 89.93 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 89.81 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 89.7 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 89.54 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 89.24 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 89.09 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 88.96 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 88.9 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 88.81 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 87.77 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 87.74 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 87.56 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 87.44 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 87.27 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 87.23 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 87.11 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 85.83 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 85.56 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 85.25 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 85.15 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 85.01 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 84.82 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 84.78 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 84.1 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 83.89 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 83.56 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 83.31 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.92 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 82.39 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 82.18 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 82.16 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 82.12 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 81.86 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 81.42 | |
| d1x74a1 | 359 | 2-methylacyl-CoA racemase Mcr {Mycobacterium tuber | 80.59 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 80.54 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 80.37 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 80.32 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.29 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 80.26 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 80.03 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.2e-49 Score=384.47 Aligned_cols=316 Identities=20% Similarity=0.236 Sum_probs=254.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHH--HHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKA--RQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
|+|||||||||||++|+++|+++|++|++++|............ ........+++++++|++|.++++++++++.+|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 78999999999999999999999999999999654322221111 1122344689999999999999999999999999
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ--PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~--~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK 255 (439)
|||+||..+...+.+++..++++|+.||.+|+++|++.+.. .+||++||++|||.....+++|+++. .|.++|+.+|
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~-~P~~~Y~~sK 160 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAK 160 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCC-CCCSHHHHHH
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCC-CCCChHHHHH
Confidence 99999998877778899999999999999999999987644 37999999999998888899998877 6889999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCCh---HHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHH
Q 013602 256 KAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMA---YFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLA 332 (439)
Q Consensus 256 ~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 332 (439)
+++|.+++.+.++++++++++||++||||+..++.. +..++..+..++...+.. +++.+.++|+|++|+|++++.
T Consensus 161 ~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~--g~~~~~r~~~~v~D~~~a~~~ 238 (357)
T d1db3a_ 161 LYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL--GNMDSLRDWGHAKDYVKMQWM 238 (357)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEE--SCTTCEECCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEE--CCCCeeecceeechHHHHHHH
Confidence 999999999999999999999999999998765543 334445555666554432 688999999999999999999
Q ss_pred HHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccC------------------------
Q 013602 333 ALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL------------------------ 388 (439)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~------------------------ 388 (439)
+++... ++.|||++++++|+.|+++.+.+.+|........+.
T Consensus 239 ~~~~~~--------------~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (357)
T d1db3a_ 239 MLQQEQ--------------PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVII 304 (357)
T ss_dssp TTSSSS--------------CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEE
T ss_pred HHhCCC--------------CCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeE
Confidence 886532 278999999999999999999999986544321110
Q ss_pred ------CCCCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 389 ------PRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 389 ------~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
.++.+...+.+|++|++++|||+|+++++|+|+++++++.+..+
T Consensus 305 ~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~k 354 (357)
T d1db3a_ 305 AVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAK 354 (357)
T ss_dssp EECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred eeccccCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 12344555678999999999999999999999999988877644
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=2.9e-47 Score=368.04 Aligned_cols=309 Identities=26% Similarity=0.435 Sum_probs=270.0
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCe------EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDG------VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~------V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
|+|||||||||||++|+++|+++|+. |+.+++......... ........++.++.+|+.+...+.......
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRAN---LAPVDADPRLRFVHGDIRDAGLLARELRGV 77 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGG---GGGGTTCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhH---hhhhhcCCCeEEEEeccccchhhhcccccc
Confidence 68999999999999999999999974 566665433222211 112223468999999999999999887766
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAA 253 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~ 253 (439)
|+|+|+|+.........++...+++|+.|+.+++++|++.+.. +||++||.++||.....+++|+++. .|.+.|+.
T Consensus 78 --d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~-~~I~~Ss~~~yg~~~~~~~~E~~~~-~p~~~Y~~ 153 (322)
T d1r6da_ 78 --DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAA 153 (322)
T ss_dssp --CEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBCTTSCC-CCCSHHHH
T ss_pred --ceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCc-eEEEeecceeecCCCCCCCCCCCCC-CCCCHHHH
Confidence 9999999987777777888899999999999999999999864 9999999999999888899998876 78899999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHH
Q 013602 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAA 333 (439)
Q Consensus 254 sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 333 (439)
+|.++|.+++.+.++++++++++||++||||++.++.+++.++..++.++++.++ +++.+.++|+|++|+|++++.+
T Consensus 154 sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~---~~g~~~r~~i~v~D~a~ai~~~ 230 (322)
T d1r6da_ 154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLY---GDGANVREWVHTDDHCRGIALV 230 (322)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEE---TTSCCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEe---cCCCeEEccEEHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888899999999999999887 6889999999999999999999
Q ss_pred HhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCcc
Q 013602 334 LDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPT 413 (439)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~ 413 (439)
++.... +++||+++++++++.|+++.+.+.+|.+.+......++..+.....+|++|+++.|||+|+
T Consensus 231 ~~~~~~-------------~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~ 297 (322)
T d1r6da_ 231 LAGGRA-------------GEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQ 297 (322)
T ss_dssp HHHCCT-------------TCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCC
T ss_pred HhCCCC-------------CCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCC
Confidence 987653 2799999999999999999999999988776555556666677778999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHc
Q 013602 414 TDLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 414 ~~l~e~l~~~v~~~~~~~ 431 (439)
++++|||+++++||++|.
T Consensus 298 ~~~eegI~~~i~w~~~n~ 315 (322)
T d1r6da_ 298 VSFADGLARTVRWYRENR 315 (322)
T ss_dssp SCHHHHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHHhH
Confidence 999999999999999864
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=2.6e-47 Score=374.26 Aligned_cols=312 Identities=24% Similarity=0.394 Sum_probs=258.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEE-ECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGL-DNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
|+||||||+||||++|+++|+++|++|+++ ++........ .........+++++++|++|.+.+.++++..++|+|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V 77 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLE---SLSDISESNRYNFEHADICDSAEITRIFEQYQPDAV 77 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGG---GGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHH---HHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEE
Confidence 689999999999999999999999976554 4432222111 111233456899999999999999999999899999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCC--------CCeEEEecCCcccCCCCCCCC---------CCC
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP--------QPAIVWASSSSVYGLNTKVPF---------SEK 241 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~--------~~~~V~~SS~~v~g~~~~~~~---------~e~ 241 (439)
||+||......+..++..++++|+.||.+++++|++.+. .++||++||..+||.....+. .++
T Consensus 78 ihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e 157 (361)
T d1kewa_ 78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred EECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCccc
Confidence 999998777777889999999999999999999987642 238999999999996554322 223
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
+.+..|.+.|+.+|.++|.++..+.++++++++++||++||||++..+.+++.++..+++|+++.++ +++++.|+|+
T Consensus 158 ~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~---g~g~~~r~~i 234 (361)
T d1kewa_ 158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDWL 234 (361)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEE---TTSCCEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEe---CCCCeEEeCE
Confidence 3334688999999999999999999999999999999999999988888889999999999998887 6889999999
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccc-------cCCCCCCC
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM-------KLPRNGDV 394 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~-------~~~~~~~~ 394 (439)
|++|+|++++.+++.... +++|||+++.++++.|+++.+.+.++........ ...+.++.
T Consensus 235 ~v~D~a~ai~~~~~~~~~-------------~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (361)
T d1kewa_ 235 YVEDHARALHMVVTEGKA-------------GETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHD 301 (361)
T ss_dssp EHHHHHHHHHHHHHHCCT-------------TCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCC
T ss_pred EHHHHHHHHHHHHhcCCC-------------CCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCC
Confidence 999999999999987653 2799999999999999999999887643322111 11234566
Q ss_pred CcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 395 PFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 395 ~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
....+|++|++++|||+|+++++|+|+++++||+++
T Consensus 302 ~~~~~d~~k~~~~lgw~P~~~l~e~i~~ti~w~~~n 337 (361)
T d1kewa_ 302 RRYAIDAGKISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp CBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred ceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHh
Confidence 677889999999999999999999999999999876
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-47 Score=369.20 Aligned_cols=303 Identities=24% Similarity=0.411 Sum_probs=251.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
.|+||||||+||||++++++|+++|++|++++|......... ........+.....|+ ++.++.+ +|+|
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~----~~~~~~~~~d~~~~~~-----~~~~~~~--~d~V 69 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV----EHWIGHENFELINHDV-----VEPLYIE--VDQI 69 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT----GGGTTCTTEEEEECCT-----TSCCCCC--CSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHH----HHhcCCCceEEEehHH-----HHHHHcC--CCEE
Confidence 378999999999999999999999999999997443211111 1112223444444444 4445544 5999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC----CCCCCChHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDR----TDQPASLYAAT 254 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~----~~~p~~~Y~~s 254 (439)
||+|+......+..++...+++|+.|+.+|+++|++.+. ++|++||.++||.....+..|+.. +..|.+.|+.+
T Consensus 70 ihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~s 147 (312)
T d2b69a1 70 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEG 147 (312)
T ss_dssp EECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHH
T ss_pred EECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHH
Confidence 999998776667788999999999999999999999884 999999999999877777776542 23578899999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC--ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD--MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLA 332 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 332 (439)
|.++|.+++.+++.+|++++++||++||||+...+ .+++.++..++.|+++.++ +++.+.++|+|++|++++++.
T Consensus 148 K~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~---~~g~~~r~~i~v~D~~~~~~~ 224 (312)
T d2b69a1 148 KRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGLVA 224 (312)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEE---SSSCCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEe---CCCCeeEccEEHHHHHHHHHH
Confidence 99999999999999999999999999999987543 4678889999999999887 688999999999999999999
Q ss_pred HHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCc
Q 013602 333 ALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKP 412 (439)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p 412 (439)
+++.... ++||++++.++++.|+++++.+.+|.+.++.+.+. ..++.....+|++|+++.|||+|
T Consensus 225 ~~~~~~~--------------~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lgw~p 289 (312)
T d2b69a1 225 LMNSNVS--------------SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSE-AQDDPQKRKPDIKKAKLMLGWEP 289 (312)
T ss_dssp HHTSSCC--------------SCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECC-CTTCCCCCCBCCHHHHHHHCCCC
T ss_pred HHhhccC--------------CceEecCCcccchhhHHHHHHHHhCCCCceEECCC-CCCCCCeeeECHHHHHHHHCCCC
Confidence 8865431 68999999999999999999999998888776653 44566677889999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHcc
Q 013602 413 TTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 413 ~~~l~e~l~~~v~~~~~~~~ 432 (439)
+++++|+|+++++||+++++
T Consensus 290 ~~~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 290 VVPLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998865
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.6e-46 Score=360.55 Aligned_cols=319 Identities=27% Similarity=0.419 Sum_probs=264.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+||||||+||||++|+++|+++|++|++++|.......... ..+.....++.++++|++|.+.+.++++..++|+||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP--VIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHH--HHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHH--HHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 679999999999999999999999999999986654443322 222334568999999999999999999988889999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+||......+..++...+++|+.||.+++++|++.+.. +||++||.++|+.....+..|++....|...|+.+|.++|
T Consensus 79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~-~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e 157 (338)
T d1udca_ 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHH
T ss_pred ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCC-EEEecCcceEEccccccccccccccCCCcchHHHHHhhhh
Confidence 999987777777889999999999999999999999865 9999999999998887777777777688999999999999
Q ss_pred HHHHHHHhH-hCCcEEEEeeccccCCCCCC----------CChHHHHHHHHHcC-CCCceeecC---CCCcceeeeeeHH
Q 013602 260 EIAHTYNHI-YGLSLTGLRFFTVYGPWGRP----------DMAYFFFTRDILNR-KSIPIFESP---DHGTVARDFTYID 324 (439)
Q Consensus 260 ~~~~~~~~~-~gi~~~ilrpg~v~G~~~~~----------~~~~~~~~~~~~~g-~~~~~~~~~---~~~~~~~~~i~v~ 324 (439)
.++.++..+ .+++++++||++||||+... ...+..++..+..+ .++.++..+ .++.+.++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~ 237 (338)
T d1udca_ 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_dssp HHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHH
T ss_pred HHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEe
Confidence 999987666 48999999999999986431 23455555555443 345554211 2477899999999
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHH
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLA 404 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~ 404 (439)
|++.++..+....... ..+++||+++++++|+.|+++.+.+.+|.+.++.+.+. +.++.....+|++|+
T Consensus 238 D~~~~~~~~~~~~~~~----------~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~ 306 (338)
T d1udca_ 238 DLADGHVVAMEKLANK----------PGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-REGDLPAYWADASKA 306 (338)
T ss_dssp HHHHHHHHHHHHHTTC----------CEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECC-CTTCCSBCCBCCHHH
T ss_pred ehhhhccccccccccc----------cCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCC-CCCCCCEeeECHHHH
Confidence 9999988887765542 12389999999999999999999999998888776654 445666778999999
Q ss_pred HHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 405 QRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 405 ~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
++.|||+|.++++|+|+++++||++|.+
T Consensus 307 ~~~lgwkp~~~l~egi~~ti~w~~~~~~ 334 (338)
T d1udca_ 307 DRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHCCCcCCCHHHHHHHHHHHHHhchh
Confidence 9999999999999999999999999854
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=5e-46 Score=362.19 Aligned_cols=318 Identities=29% Similarity=0.449 Sum_probs=268.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHH--hhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQA--LLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
+..|+|||||||||||++|+++|.++|++|++++|............... ......+.++.+|+.|...+.......
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~- 92 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV- 92 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC-
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc-
Confidence 45689999999999999999999999999999998554333222222211 123368999999999999988888877
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
++|+|+++......+..++...+++|+.|+.+|+++|++.+.. +||++||.++||.....+++|+++. .|.+.|+.+
T Consensus 93 -~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 169 (341)
T d1sb8a_ 93 -DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVEDTIG-KPLSPYAVT 169 (341)
T ss_dssp -SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCc-eEEEcccceeeCCCCCCCccCCCCC-CCCCcchHH
Confidence 9999999987777778889999999999999999999999965 9999999999999888899888776 789999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGC 330 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 330 (439)
|.++|.++..+.+.++++++++||++||||+..+. ..+..++..++.|+++.++ +++.+.++|+|++|++.++
T Consensus 170 K~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~---g~g~~~r~~i~v~D~~~a~ 246 (341)
T d1sb8a_ 170 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQAN 246 (341)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEc---CCCCEEEEEEEEeccchhh
Confidence 99999999999999999999999999999986544 3567788999999999988 6889999999999999999
Q ss_pred HHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccc----cCCCCCCCCcccCChHHHHH
Q 013602 331 LAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM----KLPRNGDVPFTHANISLAQR 406 (439)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~----~~~~~~~~~~~~~d~~k~~~ 406 (439)
..++...... .+++||+++++..|+.|+++.+.+.++.+...... ...+.++.....+|++|+++
T Consensus 247 ~~~~~~~~~~-----------~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 315 (341)
T d1sb8a_ 247 LLAATAGLDA-----------RNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAK 315 (341)
T ss_dssp HHHHTCCGGG-----------CSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHH
T ss_pred hhhhhccccc-----------cceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHH
Confidence 9998776543 23899999999999999999999999855321111 11234556667789999999
Q ss_pred HcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 407 ELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 407 ~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
.|||+|+++++++|+++++||+++++
T Consensus 316 ~LGw~p~~sl~~gi~~ti~wy~~~~k 341 (341)
T d1sb8a_ 316 LLGYAPKYDVSAGVALAMPWYIMFLK 341 (341)
T ss_dssp HTCCCCCCCHHHHHHHHHHHHHHHTC
T ss_pred HHCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999864
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=6.4e-45 Score=350.96 Aligned_cols=312 Identities=22% Similarity=0.216 Sum_probs=262.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|||||||||||++|+++|+++||+|++++|......... .......+++.++.+|++|.+.+.+++....+++++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~---l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 77 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWR---LRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVY 77 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHH---HHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHH---HHHhcccCCcEEEEccccChHHhhhhhccccccccc
Confidence 68999999999999999999999999999999765433211 122223468999999999999999999998889999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+|+.........++..++.+|+.|+.+++++|++.+..++|++.||..+||.......+|+++. .|.+.|+.+|.++|
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 156 (321)
T d1rpna_ 78 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPF-YPRSPYGVAKLYGH 156 (321)
T ss_dssp ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred cccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCc-cccChhHHHHHHHH
Confidence 99988777767788899999999999999999999998879999999999998888888887766 78899999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChH---HHHHHHHHcCCCCc-eeecCCCCcceeeeeeHHHHHHHHHHHHh
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAY---FFFTRDILNRKSIP-IFESPDHGTVARDFTYIDDIVKGCLAALD 335 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~---~~~~~~~~~g~~~~-~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 335 (439)
.++..+.++++++++++||+++|||....+... ..++..+..++... .+ +++++.++|+|++|+|++++.+++
T Consensus 157 ~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~---g~g~~~r~~i~v~D~~~~~~~~~~ 233 (321)
T d1rpna_ 157 WITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRL---GNVDAKRDWGFAGDYVEAMWLMLQ 233 (321)
T ss_dssp HHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE---SCTTCEEECEEHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEE---CCCCeEEccEEeHHHHHHHHHHHh
Confidence 999999999999999999999999987655433 33444455555444 34 688999999999999999999998
Q ss_pred hchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccC---CCCCCCCcccCChHHHHHHcCCCc
Q 013602 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL---PRNGDVPFTHANISLAQRELGYKP 412 (439)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~---~~~~~~~~~~~d~~k~~~~LG~~p 412 (439)
.+.. +.||+++++.+++.++++.+.+.+|.+.+...... .++++......|++|+++.|||+|
T Consensus 234 ~~~~--------------~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P 299 (321)
T d1rpna_ 234 QDKA--------------DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKP 299 (321)
T ss_dssp SSSC--------------CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCC
T ss_pred cCCc--------------CCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCc
Confidence 6542 67999999999999999999999997654333222 234556677889999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHcc
Q 013602 413 TTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 413 ~~~l~e~l~~~v~~~~~~~~ 432 (439)
+++++|+|+++++|+.++.+
T Consensus 300 ~~~l~e~i~~tv~~~l~~~~ 319 (321)
T d1rpna_ 300 RTSLDELIRMMVEADLRRVS 319 (321)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999988754
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=4.9e-45 Score=355.92 Aligned_cols=310 Identities=22% Similarity=0.317 Sum_probs=257.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|+|||||||||||++|+++|+++|++|.+++++....... ..........+++++.+|++|.+.+.++++.. |.|
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~--~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~--~~v 77 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN--KANLEAILGDRVELVVGDIADAELVDKLAAKA--DAI 77 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGTGGGCSSSEEEEECCTTCHHHHHHHHTTC--SEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcccc--HHHHHHhhcCCeEEEEccCCCHHHHHHHHhhh--hhh
Confidence 68999999999999999999999998766665532211111 11112233468999999999999999999987 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC------------CCCCCCCCCCCC
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT------------KVPFSEKDRTDQ 246 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~------------~~~~~e~~~~~~ 246 (439)
+|+|+......+..++...+++|+.|+.++++++++.+. ++|++||..+||... ...+.|++.. .
T Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~--k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~-~ 154 (346)
T d1oc2a_ 78 VHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY-N 154 (346)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCC-C
T ss_pred hhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc--cccccccceEecccCccccccccccCcccccccCCCC-C
Confidence 999998777667788899999999999999999999985 999999999998421 1233344433 6
Q ss_pred CCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHH
Q 013602 247 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDI 326 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dv 326 (439)
|.+.|+.+|+++|.+++.+.++++++++++||++||||+......+..++.....+..+.++ +++.+.++|+|++|+
T Consensus 155 p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~---~~g~~~r~~i~v~D~ 231 (346)
T d1oc2a_ 155 PSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY---GEGKNVRDWIHTNDH 231 (346)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEE---TTSCCEEECEEHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEe---CCCCccccccchhhH
Confidence 78999999999999999999989999999999999999988778888888888899988887 689999999999999
Q ss_pred HHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHH
Q 013602 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQR 406 (439)
Q Consensus 327 a~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 406 (439)
|++++.++..+.. ++.||++++++.++.++++.+.+.++.+.........+.++.....+|++|+++
T Consensus 232 a~a~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 298 (346)
T d1oc2a_ 232 STGVWAILTKGRM-------------GETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRD 298 (346)
T ss_dssp HHHHHHHHHHCCT-------------TCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHH
T ss_pred HHHHHHHHhhccc-------------CccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHHH
Confidence 9999998876653 279999999999999999999999997654433333445555667789999999
Q ss_pred HcCCCccC-cHHHHHHHHHHHHHHHc
Q 013602 407 ELGYKPTT-DLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 407 ~LG~~p~~-~l~e~l~~~v~~~~~~~ 431 (439)
.|||+|++ +|+|||+++++||++|.
T Consensus 299 ~LGw~P~~t~l~e~i~~ti~w~~~n~ 324 (346)
T d1oc2a_ 299 ELGWTPQFTDFSEGLEETIQWYTDNQ 324 (346)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHTH
T ss_pred HHCCCCcCCCHHHHHHHHHHHHHHHH
Confidence 99999986 69999999999999864
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-43 Score=343.18 Aligned_cols=322 Identities=29% Similarity=0.432 Sum_probs=262.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC----ChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY----DPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
|+|||||||||||++|+++|+++|++|++++|..... ...............++.++++|++|.+.+.+++.+..+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 82 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF 82 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccccc
Confidence 6899999999999999999999999999998744322 112222223334567899999999999999999999988
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK 255 (439)
++++|+||..+...+..++...+++|+.|+.++++++++.+.. +||++||+.+||........++.....+.++|+.+|
T Consensus 83 ~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~-~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~~k 161 (346)
T d1ek6a_ 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSK 161 (346)
T ss_dssp EEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHHH
T ss_pred ccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcc-cccccccceeeeccccccccccccccccCChHHHHH
Confidence 9999999988777778889999999999999999999999966 999999999999877665555555556788999999
Q ss_pred HHHHHHHHHHHhH-hCCcEEEEeeccccCCCCC----------CCChHHHHHHHHH-cCCCCceeec---CCCCcceeee
Q 013602 256 KAGEEIAHTYNHI-YGLSLTGLRFFTVYGPWGR----------PDMAYFFFTRDIL-NRKSIPIFES---PDHGTVARDF 320 (439)
Q Consensus 256 ~a~E~~~~~~~~~-~gi~~~ilrpg~v~G~~~~----------~~~~~~~~~~~~~-~g~~~~~~~~---~~~~~~~~~~ 320 (439)
..+|..++++.+. .++..+++||+++|||... ....+..+...+. ++..+.++.. ..++.+.++|
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdf 241 (346)
T d1ek6a_ 162 FFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241 (346)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECE
T ss_pred HHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeE
Confidence 9999999998775 4899999999999998642 2234444444433 4555555421 1356788999
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHAN 400 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d 400 (439)
+|++|+|.++..++...... ..+++|||++++.+++.|+++.+.+.+|.+.++.+.+ .++++.....+|
T Consensus 242 i~v~D~a~~~~~~~~~~~~~----------~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~-~~~~e~~~~~~d 310 (346)
T d1ek6a_ 242 IHVVDLAKGHIAALRKLKEQ----------CGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA-RREGDVAACYAN 310 (346)
T ss_dssp EEHHHHHHHHHHHHHHHTTT----------CCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEEC-CCTTCCSEECBC
T ss_pred EEEEeccchhhhhccccccc----------cCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECC-CCCCCCCEeeEC
Confidence 99999999999887665532 2348999999999999999999999999988876655 455677778899
Q ss_pred hHHHHHHcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 401 ISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 401 ~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
.+|+++.|||+|+++++|+|+++++||++|-+-
T Consensus 311 ~~k~~~~lgw~p~~slee~I~~~i~w~~~n~~~ 343 (346)
T d1ek6a_ 311 PSLAQEELGWTAALGLDRMCEDLWRWQKQNPSG 343 (346)
T ss_dssp CHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCcCCCHHHHHHHHHHHHHhCHhh
Confidence 999999999999999999999999999988653
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-43 Score=345.24 Aligned_cols=315 Identities=19% Similarity=0.210 Sum_probs=255.1
Q ss_pred CEE-EEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHH---HHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 100 ISV-LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKK---ARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 100 ~~V-lItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
|+| ||||||||||++|+++|+++||+|++++|.........-. .........+++++.+|++|.+.+.+++.+..+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 467 9999999999999999999999999999966433221111 011112235899999999999999999999999
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ--PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAA 253 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~--~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~ 253 (439)
++++|+|+.........++...+++|+.||.++++++++.+.. ++||++||++|||.....+++|+++. .|.++|+.
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~-~P~~~Yg~ 159 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF-YPRSPYGA 159 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCC-CCCSHHHH
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCC-CCCCHHHH
Confidence 9999999987777777888889999999999999999988754 38999999999998888889998877 78999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHH----HHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHH
Q 013602 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYF----FFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329 (439)
Q Consensus 254 sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a 329 (439)
||+++|.++..+.++++++++++||++||||+........ .+......+.+...+ +++.+.++|+|++|++.+
T Consensus 160 sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~---g~g~~~r~~i~v~D~~~a 236 (347)
T d1t2aa_ 160 AKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL---GNLDAKRDWGHAKDYVEA 236 (347)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEE---SCTTCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeec---CCCcceeeeeEecHHHHH
Confidence 9999999999999889999999999999999876554332 334444556666666 688999999999999999
Q ss_pred HHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccC--------------------C
Q 013602 330 CLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKL--------------------P 389 (439)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~--------------------~ 389 (439)
+..+++.... +.|+++.+...++.+....+...++........+. .
T Consensus 237 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (347)
T d1t2aa_ 237 MWLMLQNDEP--------------EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYY 302 (347)
T ss_dssp HHHHHHSSSC--------------CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGS
T ss_pred HHHHhhcCCC--------------ccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCC
Confidence 9999886542 57999999999999999999999987644322211 0
Q ss_pred CCCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 390 RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 390 ~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
+..+.....+|++|++++|||+|+++++|+|+++++|..+.++
T Consensus 303 rp~~~~~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~~~~~k 345 (347)
T d1t2aa_ 303 RPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 345 (347)
T ss_dssp CSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 1234445667999999999999999999999999988777654
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-43 Score=343.62 Aligned_cols=308 Identities=23% Similarity=0.347 Sum_probs=252.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHH-hhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKK-LFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~-~~~~~~~d~ 177 (439)
|+|||||||||||++++++|+++| ++|+++++.... .......++++++++|+++.+.+.+ +.+++ |+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~--------~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~--d~ 70 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA--------ISRFLNHPHFHFVEGDISIHSEWIEYHVKKC--DV 70 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG--------GGGGTTCTTEEEEECCTTTCSHHHHHHHHHC--SE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc--------hhhhccCCCeEEEECccCChHHHHHHHHhCC--Cc
Confidence 689999999999999999999999 589999884321 1122345789999999998776655 55555 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC------CCCCCCChH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKD------RTDQPASLY 251 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~------~~~~p~~~Y 251 (439)
|||+|+........+++...+.+|+.|+.++++++.+.+. +++++||..+|+........|.. +...|...|
T Consensus 71 Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~--~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y 148 (342)
T d2blla1 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK--RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 148 (342)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC--EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH
T ss_pred cccccccccccccccCCccccccccccccccccccccccc--cccccccccccccccccccccccccccccccCCCcchh
Confidence 9999998777777788889999999999999999999885 88899999999977665554432 223466889
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC--------CChHHHHHHHHHcCCCCceeecCCCCcceeeeeeH
Q 013602 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP--------DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYI 323 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v 323 (439)
+.+|.++|.++..+.+++|++++++||+.+|||.... ......++..++.|+++.++ +++++.++|+|+
T Consensus 149 ~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~g~~~r~~i~v 225 (342)
T d2blla1 149 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTDI 225 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEG---GGSCCEEECEEH
T ss_pred hhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCcccc---CCCCeeeeeccc
Confidence 9999999999999999999999999999999986432 23567888889999998886 688999999999
Q ss_pred HHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC-cccHHHHHHHHHHHhCCccccccccCCC------------
Q 013602 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS-PVPVSDLVSILERLLKVKAKRNIMKLPR------------ 390 (439)
Q Consensus 324 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~t~~el~~~l~~~~g~~~~~~~~~~~~------------ 390 (439)
+|+|++++.+++.+... ..+++|||++++ ++|+.|+++.+.+.++........+...
T Consensus 226 ~D~~~a~~~~~~~~~~~----------~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (342)
T d2blla1 226 RDGIEALYRIIENAGNR----------CDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYG 295 (342)
T ss_dssp HHHHHHHHHHHHCGGGT----------TTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC-------
T ss_pred ccccceeeeehhhcccc----------CCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccc
Confidence 99999999999876532 234899998765 5899999999999999776665544221
Q ss_pred --CCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 391 --NGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 391 --~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
..+..+..+|++|++++|||+|+++++|+|+++++||+++.+
T Consensus 296 ~~~~~~~~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~~ 339 (342)
T d2blla1 296 KGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 339 (342)
T ss_dssp -----CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred cccccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCcC
Confidence 123345567999999999999999999999999999999865
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.8e-43 Score=343.84 Aligned_cols=304 Identities=22% Similarity=0.314 Sum_probs=251.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
+.|+|||||||||||++|+++|+++|++|++++|....... .......+..+|+.|.+.+.++++++ |+
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~--d~ 82 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT---------EDMFCDEFHLVDLRVMENCLKVTEGV--DH 82 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC---------GGGTCSEEEECCTTSHHHHHHHHTTC--SE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh---------hhcccCcEEEeechhHHHHHHHhhcC--Ce
Confidence 56789999999999999999999999999999985442211 12246688999999999999999877 99
Q ss_pred EEEcccccCccc-cccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCC------CCCCCCCCh
Q 013602 178 VMHLAAQAGVRY-AMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEK------DRTDQPASL 250 (439)
Q Consensus 178 Vi~~Ag~~~~~~-~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~------~~~~~p~~~ 250 (439)
|||+|+...... ....+.....+|+.|+.++++++++.+.. +||++||..+|+.....+..|+ ..+..|.+.
T Consensus 83 Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~ 161 (363)
T d2c5aa1 83 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDA 161 (363)
T ss_dssp EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSH
T ss_pred EeecccccccccccccccccccccccchhhHHHHhHHhhCcc-ccccccccccccccccccccccccccccCCcCCCCCH
Confidence 999998755433 35677889999999999999999999965 9999999999997666555443 223467899
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCC-----hHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHH
Q 013602 251 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDM-----AYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDD 325 (439)
Q Consensus 251 Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~D 325 (439)
|+.+|+++|.+++++.+++|++++++||++||||++.... ....+............+ +++.+.++|+|++|
T Consensus 162 Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~rd~i~v~D 238 (363)
T d2c5aa1 162 FGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW---GDGLQTRSFTFIDE 238 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEE---SCSCCEECCEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCccccccccccccccccccccccccccc---CCCCeEEEEeehhH
Confidence 9999999999999999999999999999999999865322 223334444555555666 68899999999999
Q ss_pred HHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHH
Q 013602 326 IVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQ 405 (439)
Q Consensus 326 va~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~ 405 (439)
++++++.+++... +++||++++..+|+.|+++++.+..|.+.++...+.+ .+.....+|++|++
T Consensus 239 ~~~~~~~~~~~~~--------------~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~--~~~~~~~~d~ska~ 302 (363)
T d2c5aa1 239 CVEGVLRLTKSDF--------------REPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP--EGVRGRNSDNNLIK 302 (363)
T ss_dssp HHHHHHHHHHSSC--------------CSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC--CCCSBCEECCHHHH
T ss_pred HHHHHHHHHhCCC--------------CCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCCC--CCccccccCHHHHH
Confidence 9999999887543 2789999999999999999999999988877666543 44556678999999
Q ss_pred HHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 406 RELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 406 ~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
+.|||+|+++++|+|+++++||+++++
T Consensus 303 ~~LGw~p~~sleegi~~ti~w~~~~~~ 329 (363)
T d2c5aa1 303 EKLGWAPNMRLKEGLRITYFWIKEQIE 329 (363)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998865
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8e-43 Score=340.26 Aligned_cols=321 Identities=28% Similarity=0.388 Sum_probs=253.0
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|.|||||||||||++|+++|+++|++|+++++.......... ........+++++++|++|.+.++++++..++|+||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~--~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 79 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVA--RLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI 79 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHH--HHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHH--hHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence 679999999999999999999999999999875544332222 223334568999999999999999999988999999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC----CCCCCCCCCCCCCChHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTK----VPFSEKDRTDQPASLYAATK 255 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~----~~~~e~~~~~~p~~~Y~~sK 255 (439)
|+||.........++..+..+|+.|+.+++++|++.+.. +||++||..+||.... .++.|+.+. .|.+.|+.+|
T Consensus 80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~-~~i~~SS~~vyg~~~~~~~~~~~~e~~~~-~p~~~Y~~sK 157 (347)
T d1z45a2 80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYGHTK 157 (347)
T ss_dssp ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTTCCSBCTTSCC-CCCSHHHHHH
T ss_pred EccccccccccccCcccccccchhhhHHHHHHHHhcccc-eEEeecceeeecCcccCCCCCccccccCC-CCCChhHhHH
Confidence 999987777777888999999999999999999999865 9999999999996654 345565544 6889999999
Q ss_pred HHHHHHHHHHHhH--hCCcEEEEeeccccCCCCC----------CCChHHHHHHHHH-cCCCCceeecC---CCCcceee
Q 013602 256 KAGEEIAHTYNHI--YGLSLTGLRFFTVYGPWGR----------PDMAYFFFTRDIL-NRKSIPIFESP---DHGTVARD 319 (439)
Q Consensus 256 ~a~E~~~~~~~~~--~gi~~~ilrpg~v~G~~~~----------~~~~~~~~~~~~~-~g~~~~~~~~~---~~~~~~~~ 319 (439)
.++|.+++++.+. .+++++++||++|||+... ++..+..+...+. .+.++.++... .++...+|
T Consensus 158 ~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d 237 (347)
T d1z45a2 158 YAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 237 (347)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEEC
T ss_pred HHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeee
Confidence 9999999998764 4899999999999987431 2234545554443 34455554211 23456788
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHA 399 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 399 (439)
++++.|++.+++.+++....... ....+++||+++++++|+.|+++.+.+.+|.+.++.+.+. +.++.....+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 310 (347)
T d1z45a2 238 YIHVVDLAKGHIAALQYLEAYNE------NEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR-RAGDVLNLTA 310 (347)
T ss_dssp EEEHHHHHHHHHHHHHHHHHSCT------TCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC----------CCCCCB
T ss_pred eeeeecccccccccccccccccc------cccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCC-CCCCCCEeeE
Confidence 99999999999998876654321 1134589999999999999999999999998887765553 3456667789
Q ss_pred ChHHHHHHcCCCccCcHHHHHHHHHHHHHHHc
Q 013602 400 NISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 431 (439)
Q Consensus 400 d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~ 431 (439)
|++|++++|||+|.++++|+|+++++||++|.
T Consensus 311 d~sk~~~~lGw~p~~~lee~i~~ti~w~~~np 342 (347)
T d1z45a2 311 KPDRAKRELKWQTELQVEDSCKDLWKWTTENP 342 (347)
T ss_dssp CCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999999983
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=9.4e-42 Score=338.18 Aligned_cols=318 Identities=22% Similarity=0.285 Sum_probs=247.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC-------------CCC-ChhHHHHHHHhhhcCCeEEEEcccCCHH
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN-------------DYY-DPSLKKARQALLERSGIFIVEGDINDMA 164 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~-------------~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~ 164 (439)
||+|||||||||||++|+++|+++||+|+++|+.. ... ...............+++++.+|++|.+
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 68999999999999999999999999999997321 011 1111112223334568999999999999
Q ss_pred HHHHhhcccCccEEEEcccccCccccccC---hhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 165 LLKKLFDVVSFTHVMHLAAQAGVRYAMQN---PNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 165 ~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~---~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
.++++++++++|+|||+||......+..+ +..++.+|+.||.+++++|++.+..+++|+.||..+|+.... +..|.
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~-~~~~~ 159 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEG 159 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CBCSS
T ss_pred HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccc-ccccc
Confidence 99999999999999999998665554444 446889999999999999999998778999999998875432 11111
Q ss_pred -------------CCCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC-----------------Ch
Q 013602 242 -------------DRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD-----------------MA 291 (439)
Q Consensus 242 -------------~~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~-----------------~~ 291 (439)
..+..|.+.|+.+|+++|.+++.+.++++++++++||++||||+..+. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 239 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence 113357789999999999999999999999999999999999976432 24
Q ss_pred HHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHH
Q 013602 292 YFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVS 371 (439)
Q Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~ 371 (439)
+..++.....++++.++ +++.+.|+|+|++|++.+++.++++....+ ....++ .+++.+|+.|+++
T Consensus 240 i~~~~~~~~~~~~~~i~---g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g----------~~~~~~-~~~~~~si~el~~ 305 (393)
T d1i24a_ 240 LNRFCVQAAVGHPLTVY---GKGGQTRGYLDIRDTVQCVEIAIANPAKAG----------EFRVFN-QFTEQFSVNELAS 305 (393)
T ss_dssp HHHHHHHHHHTCCEEEE---TTSCCEEEEEEHHHHHHHHHHHHHSCCCTT----------CEEEEE-ECSEEEEHHHHHH
T ss_pred hhhhhHHhhcCCeeEEe---eecccccccccccchHHHHHHHHHhhcccc----------eeeeec-CCCCeeEHHHHHH
Confidence 67788889999999998 688999999999999999999998665421 011222 3456799999999
Q ss_pred HHHHHh---CCccccccccCCC-CCCCCcccCChHHHHHHcCCCccCcHHHHHHHHHHHHHHHcc
Q 013602 372 ILERLL---KVKAKRNIMKLPR-NGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYA 432 (439)
Q Consensus 372 ~l~~~~---g~~~~~~~~~~~~-~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 432 (439)
++.+.. +.+.+....+.++ ..+..++..|++|++ +|||+|+++++++++++++|++++.+
T Consensus 306 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~LGw~P~~~~~~~i~~~~~~~~~~k~ 369 (393)
T d1i24a_ 306 LVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFKD 369 (393)
T ss_dssp HHHHHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHhhCCCcceeeccCCCCCCCccEecCCHHHHH-HcCCccccCHHHHHHHHHHHHHHHHH
Confidence 998875 4444444333333 355566778899996 59999999999999999999988754
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=7.7e-42 Score=331.63 Aligned_cols=317 Identities=21% Similarity=0.244 Sum_probs=251.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHH---HHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLK---KARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.|+|||||||||||++|+++|+++||+|++++|..+......- ...........+.++.+|+++.+++.+.++..++
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~ 80 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 80 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence 3799999999999999999999999999999996653322211 0111122346789999999999999999999899
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcC----CCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChH
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN----PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLY 251 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~----~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y 251 (439)
|+|||+|+........+++...+.+|+.|+.++++++++.. ...++++.||+.+|+... .+++|+++. .|.+.|
T Consensus 81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~-~~~~E~~~~-~p~~~Y 158 (339)
T d1n7ha_ 81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP-PPQSETTPF-HPRSPY 158 (339)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC-SSBCTTSCC-CCCSHH
T ss_pred chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC-CCCCCCCCC-CCcchh
Confidence 99999999877766778899999999999999999987532 233788888888876543 467777766 789999
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHH---HHHHHcCCCCceeecCCCCcceeeeeeHHHHHH
Q 013602 252 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFF---TRDILNRKSIPIFESPDHGTVARDFTYIDDIVK 328 (439)
Q Consensus 252 ~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~ 328 (439)
+.+|+++|.++..+.+.++++++++||++||||+...+.....+ +.....+....++. +++.+.++|+|++|+|.
T Consensus 159 ~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~--g~~~~~rd~~~v~D~a~ 236 (339)
T d1n7ha_ 159 AASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL--GNLQASRDWGFAGDYVE 236 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEE--SCTTCEEECEEHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEe--CCCCccccceeeehHHH
Confidence 99999999999999999999999999999999987655543333 23333344333332 67899999999999999
Q ss_pred HHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccc---cCCCCCCCCcccCChHHHH
Q 013602 329 GCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM---KLPRNGDVPFTHANISLAQ 405 (439)
Q Consensus 329 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~---~~~~~~~~~~~~~d~~k~~ 405 (439)
++..+++.+.. ..+++..+...+..++++.+.+.++........ ...++++......|++|++
T Consensus 237 ~~~~~~~~~~~--------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak 302 (339)
T d1n7ha_ 237 AMWLMLQQEKP--------------DDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAK 302 (339)
T ss_dssp HHHHHHTSSSC--------------CEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHH
T ss_pred HHHHHHhcCCC--------------CccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHH
Confidence 99999987653 567778888999999999999999976543222 1123455666778999999
Q ss_pred HHcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 406 RELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 406 ~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
+.|||+|+++++|||+++++||.+..++
T Consensus 303 ~~LGw~P~~~le~gi~~ti~~~~~~~~~ 330 (339)
T d1n7ha_ 303 EVLGWKPQVGFEKLVKMMVDEDLELAKR 330 (339)
T ss_dssp HHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988654
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=6.4e-41 Score=331.06 Aligned_cols=325 Identities=23% Similarity=0.378 Sum_probs=251.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHh-CCCeEEEEECCCCCC-----ChhHHHHHHHh---------hhcCCeEEEEcccCCH
Q 013602 99 GISVLVTGAAGFVGTHVSAALKR-RGDGVLGLDNFNDYY-----DPSLKKARQAL---------LERSGIFIVEGDINDM 163 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~-----~~~~~~~~~~~---------~~~~~v~~~~~Dl~d~ 163 (439)
+|+||||||+||||++|+++|++ .|++|+++++..... ........... .....+.++.+|++|.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 57999999999999999999986 689999998532211 11111111111 1124688999999999
Q ss_pred HHHHHhhcccC-ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC------
Q 013602 164 ALLKKLFDVVS-FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKV------ 236 (439)
Q Consensus 164 ~~~~~~~~~~~-~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~------ 236 (439)
+.++++++..+ +|+|||+|+........+++...+++|+.++.++++++++.+.. +++++||..+|+.....
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC-----CC
T ss_pred HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCc-ccccccccccccccccccccccc
Confidence 99999998764 49999999987776677788889999999999999999999965 99999999988754432
Q ss_pred -CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCC---------hHHHHHHHHH------
Q 013602 237 -PFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDM---------AYFFFTRDIL------ 300 (439)
Q Consensus 237 -~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~---------~~~~~~~~~~------ 300 (439)
++.|++.. .|.+.|+.+|+++|.++.++.+.+|++++++||+++|||+..... .++.++..++
T Consensus 161 ~~~~e~~~~-~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~ 239 (383)
T d1gy8a_ 161 EPIDINAKK-SPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPD 239 (383)
T ss_dssp CCBCTTSCC-BCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC
T ss_pred cccccccCC-CCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhcccc
Confidence 34444444 688999999999999999999999999999999999999876432 2333333322
Q ss_pred ----------cCCCCceeecC---CCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHH
Q 013602 301 ----------NRKSIPIFESP---DHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVS 367 (439)
Q Consensus 301 ----------~g~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~ 367 (439)
.+.++.++... ++|.+.|+|+|++|+|++++.+++....... ......+++|||++++++++.
T Consensus 240 ~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~----~~~~~~~~i~Ni~s~~~~s~~ 315 (383)
T d1gy8a_ 240 QRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGP----NDKSKYFSVFNLGTSRGYSVR 315 (383)
T ss_dssp -----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCT----TTGGGSEEEEEESCSCCEEHH
T ss_pred ccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccc----cccccCccEEEeCCCCceeHH
Confidence 23444444211 3478889999999999999999987654321 112234589999999999999
Q ss_pred HHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHHHcCCCccCcHHHHHHHH-HHHHHHH
Q 013602 368 DLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKF-VRWYLSY 430 (439)
Q Consensus 368 el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~-v~~~~~~ 430 (439)
|+++++.+.+|.+.++...+ .+.++.....+|++|++++|||+|+++++|+|+++ +.|+++|
T Consensus 316 el~~~i~~~~~~~~~~~~~~-~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~ 378 (383)
T d1gy8a_ 316 EVIEVARKTTGHPIPVRECG-RREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH 378 (383)
T ss_dssp HHHHHHHHHHCCCCCEEEEC-CCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCceEECC-CCCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhC
Confidence 99999999999887766554 45567777888999999999999999999999887 5777766
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-41 Score=323.05 Aligned_cols=299 Identities=20% Similarity=0.342 Sum_probs=243.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
.|+|||||||||||++|+++|+++|+.|+++++.. ++|+.|.+.+.++++...+|.|
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~d~v 58 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQV 58 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch-----------------------hccccCHHHHHHHHhhcCCCEE
Confidence 47899999999999999999999999998876511 2699999999999998889999
Q ss_pred EEcccccCcc-ccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC----CCCCChHHH
Q 013602 179 MHLAAQAGVR-YAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRT----DQPASLYAA 253 (439)
Q Consensus 179 i~~Ag~~~~~-~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~----~~p~~~Y~~ 253 (439)
+|+|+..+.. ....++...+++|+.||.+++++|++.+.. +|||+||.++||.....++.|+.+. ..+.++|+.
T Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~-~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~ 137 (315)
T d1e6ua_ 59 YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAI 137 (315)
T ss_dssp EECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHH
T ss_pred EEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHH
Confidence 9999875432 334566788999999999999999999865 9999999999998877777776543 223457999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCC---------hHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDM---------AYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 254 sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
+|+++|.+++.+.+++|++++++||++||||++.... ....+......+..+.++ +++.+.++|+|++
T Consensus 138 sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~~~v~ 214 (315)
T d1e6ua_ 138 AKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVW---GSGTPMREFLHVD 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEE---SCSCCEECEEEHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEc---CCCceEEEEEEee
Confidence 9999999999999999999999999999999875432 112234445566666666 6788999999999
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHH
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLA 404 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~ 404 (439)
|++.++..+++....... .........++++.+.+.++.++++.+.+.+|.+..+.+.+. +.++.....+|++|+
T Consensus 215 d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~-~~~~~~~~~~d~sk~ 289 (315)
T d1e6ua_ 215 DMAAASIHVMELAHEVWL----ENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS-KPDGTPRKLLDVTRL 289 (315)
T ss_dssp HHHHHHHHHHHSCHHHHH----HTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT-SCCCCSBCCBCCHHH
T ss_pred hhHHHHHHhhhhcccccc----ccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCC-CCCCCceeccCHHHH
Confidence 999999999876643210 001123378999999999999999999999998887766553 334555567899999
Q ss_pred HHHcCCCccCcHHHHHHHHHHHHHHH
Q 013602 405 QRELGYKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 405 ~~~LG~~p~~~l~e~l~~~v~~~~~~ 430 (439)
+ +|||+|+++++|+|+++++||++|
T Consensus 290 k-~Lg~~p~~~l~e~i~~ti~w~~~N 314 (315)
T d1e6ua_ 290 H-QLGWYHEISLEAGLASTYQWFLEN 314 (315)
T ss_dssp H-HTTCCCCCCHHHHHHHHHHHHHHT
T ss_pred H-HcCCCCCCCHHHHHHHHHHHHHHc
Confidence 6 699999999999999999999987
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=1.7e-40 Score=321.26 Aligned_cols=311 Identities=22% Similarity=0.359 Sum_probs=248.8
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMH 180 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~ 180 (439)
+|||||||||||++|+++|+++|++|+++++....... ..........+++++.+|++|.+++.++++++++|+|||
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~---~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih 78 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGAT---DNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH 78 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHH---HHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccch---hHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEe
Confidence 69999999999999999999999999999864432211 112222345789999999999999999999999999999
Q ss_pred cccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCC---------------CCCCC
Q 013602 181 LAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSE---------------KDRTD 245 (439)
Q Consensus 181 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e---------------~~~~~ 245 (439)
+|+.........++...+++|+.||.+|++++.+.+..++|++.|+..+++.....+..+ +....
T Consensus 79 ~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T d1orra_ 79 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL 158 (338)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred ecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcc
Confidence 999877766777899999999999999999999999875666666666665443322111 11122
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCC---CChHHHHHHHHHc-----CCCCceeecCCCCcce
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRP---DMAYFFFTRDILN-----RKSIPIFESPDHGTVA 317 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~---~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~ 317 (439)
.|.+.|+.+|...|.++....+.+++...++++..+||+.... ......++..+++ ++++.++ +++.+.
T Consensus 159 ~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~ 235 (338)
T d1orra_ 159 DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTIS---GNGKQV 235 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEE---SSSCCE
T ss_pred ccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEe---CCCcee
Confidence 4678999999999999999999999999999999999876532 2344555555443 5667776 688999
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecC--CCcccHHHHHHHHHHHhCCccccccccCCCCCCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN--TSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVP 395 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~ 395 (439)
++|+|++|++++++.+++...... +++|++.. +..+++.|++..+.+..+.+.++...+ .+.++..
T Consensus 236 r~~~~v~D~~~~~~~~l~~~~~~~-----------~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~-~~~~~~~ 303 (338)
T d1orra_ 236 RDVLHAEDMISLYFTALANVSKIR-----------GNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP-VRESDQR 303 (338)
T ss_dssp EECEEHHHHHHHHHHHHHTHHHHT-----------TCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEEC-CCSSCCS
T ss_pred EeeecccchhhHHHHHHhcccccc-----------CccccccccccccccHHHHHHHHHHHHCCCceeEeCC-CCCCCcC
Confidence 999999999999999998766532 38999965 457899999999999999887776655 3445566
Q ss_pred cccCChHHHHHHcCCCccCcHHHHHHHHHHHHHH
Q 013602 396 FTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429 (439)
Q Consensus 396 ~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~~~~~ 429 (439)
.+..|++|+++.|||+|+++++|+|+++++||+.
T Consensus 304 ~~~~d~~k~~~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 304 VFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp EECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred eeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence 6778999999999999999999999999999975
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=4e-40 Score=321.61 Aligned_cols=323 Identities=21% Similarity=0.236 Sum_probs=254.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
.++|+|||||||||||++|++.|+++|++|++++|+........ .......+++++.+|++|++++.++++...+|
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~----~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~ 81 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLF----ETARVADGMQSEIGDIRDQNKLLESIREFQPE 81 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHH----HHTTTTTTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHH----hhhhcccCCeEEEeeccChHhhhhhhhhchhh
Confidence 36799999999999999999999999999999999766443321 11122458999999999999999999999999
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~ 256 (439)
+|+|+|+......+.+++...+.+|+.|+.++++++++.+....+++.||..+++........+++.+..|..+|+.+|.
T Consensus 82 ~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k~ 161 (356)
T d1rkxa_ 82 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKG 161 (356)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHH
T ss_pred hhhhhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccccCCCCccccccc
Confidence 99999998777777788999999999999999999999887767777777666655444433344444478899999999
Q ss_pred HHHHHHHHHHhH---------hCCcEEEEeeccccCCCCCC-CChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHH
Q 013602 257 AGEEIAHTYNHI---------YGLSLTGLRFFTVYGPWGRP-DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDI 326 (439)
Q Consensus 257 a~E~~~~~~~~~---------~gi~~~ilrpg~v~G~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dv 326 (439)
+.|..+..++.+ +++.++++||+++|||++.. ..++..++..+..+..+. + +.+.+.++|+|++|+
T Consensus 162 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~-~---~~~~~~~~~~~v~D~ 237 (356)
T d1rkxa_ 162 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVI-I---RNPHAIRPWQHVLEP 237 (356)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEE-C---SCTTCEECCEETHHH
T ss_pred cchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCceE-E---eeccccccccccccc
Confidence 999999887764 47889999999999998643 345566777666555543 3 578899999999999
Q ss_pred HHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCCCCCcccCChHHHHH
Q 013602 327 VKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQR 406 (439)
Q Consensus 327 a~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 406 (439)
+.++..++.......... ..+..++...+..++..++++.+.+.++.+..+......++.+.....+|++|+++
T Consensus 238 ~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~ 311 (356)
T d1rkxa_ 238 LSGYLLLAQKLYTDGAEY------AEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKM 311 (356)
T ss_dssp HHHHHHHHHHHHHTCGGG------CSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHH
T ss_pred cchhhhhhhhhccccccc------ccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHH
Confidence 999999988765432100 01133444446789999999999999998877766555556677778899999999
Q ss_pred HcCCCccCcHHHHHHHHHHHHHHHccC
Q 013602 407 ELGYKPTTDLQTGLKKFVRWYLSYYAG 433 (439)
Q Consensus 407 ~LG~~p~~~l~e~l~~~v~~~~~~~~~ 433 (439)
+|||+|+++++++|+++++||+++.+.
T Consensus 312 ~LGw~P~~~l~egi~~ti~wyk~~~~~ 338 (356)
T d1rkxa_ 312 QLGWHPRWNLNTTLEYIVGWHKNWLSG 338 (356)
T ss_dssp HHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCcCCCHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999987664
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=2.2e-37 Score=291.80 Aligned_cols=275 Identities=19% Similarity=0.193 Sum_probs=238.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|||||||||||++|+++|.++|++|++++|. .+|++|.+++++++++.++|+||
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~------------------------~~D~~d~~~~~~~l~~~~~d~vi 57 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQ------------------------DLDITNVLAVNKFFNEKKPNVVI 57 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT------------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeech------------------------hccCCCHHHHHHHHHHcCCCEEE
Confidence 679999999999999999999999999999981 15999999999999999999999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+|+......+...+......|+..+.++.+.++.... .++++||..+|+.....+..|++.+ .+...|+.+|.+.|
T Consensus 58 h~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~~~ss~~v~~~~~~~~~~e~~~~-~~~~~~~~~k~~~e 134 (281)
T d1vl0a_ 58 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQISTDYVFDGEAKEPITEFDEV-NPQSAYGKTKLEGE 134 (281)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCSCCSSCBCTTSCC-CCCSHHHHHHHHHH
T ss_pred eeccccccccccccchhhcccccccccccccccccccc--cccccccceeeeccccccccccccc-cchhhhhhhhhHHH
Confidence 99998777777788888999999999999999988874 8999999999998888889988877 68899999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchh
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
.++++ .+.+++++||++||||+.+ ....++..+..+..+..+ ++..++|+|++|+++++..+++....
T Consensus 135 ~~~~~----~~~~~~i~R~~~vyG~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~D~~~~~~~~~~~~~~ 202 (281)
T d1vl0a_ 135 NFVKA----LNPKYYIVRTAWLYGDGNN---FVKTMINLGKTHDELKVV-----HDQVGTPTSTVDLARVVLKVIDEKNY 202 (281)
T ss_dssp HHHHH----HCSSEEEEEECSEESSSSC---HHHHHHHHHHHCSEEEEE-----SSCEECCEEHHHHHHHHHHHHHHTCC
T ss_pred HHHHH----hCCCccccceeEEeCCCcc---cccchhhhhccCCceeec-----CCceeccchhhhhhhhhhhhhhhccc
Confidence 98876 4889999999999999754 566777778888877775 36889999999999999999987653
Q ss_pred ccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCC----CCCcccCChHHHHHHcCCCccCc
Q 013602 340 STGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNG----DVPFTHANISLAQRELGYKPTTD 415 (439)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~----~~~~~~~d~~k~~~~LG~~p~~~ 415 (439)
++||+++++.+|+.|+++.+.+.+|.+.++..++..... .+.+..+|++|+++.|||+|. +
T Consensus 203 --------------g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~-~ 267 (281)
T d1vl0a_ 203 --------------GTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-E 267 (281)
T ss_dssp --------------EEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-B
T ss_pred --------------CceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCC-C
Confidence 699999999999999999999999988777655422111 123445799999999999998 8
Q ss_pred HHHHHHHHHHHHH
Q 013602 416 LQTGLKKFVRWYL 428 (439)
Q Consensus 416 l~e~l~~~v~~~~ 428 (439)
++|||+++++|++
T Consensus 268 ~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 268 WKESLKEYIDLLQ 280 (281)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999974
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=9.2e-37 Score=296.55 Aligned_cols=306 Identities=19% Similarity=0.161 Sum_probs=220.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
++||+||||||+||||++|+++|+++|++|+++.|+.++.. ................++.+|+.|.+++.+++.++ |
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~ 85 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLA-NLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA--A 85 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC--S
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHH-HHHHhhhccccccccEEEeccccchhhhhhhcccc--h
Confidence 57899999999999999999999999999999999432100 00000111112234456889999999999999988 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC---C-CCCCCC-----------
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNT---K-VPFSEK----------- 241 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~---~-~~~~e~----------- 241 (439)
+|+|+|+.... ..++...+..|+.||.+++++|.+.+..++||++||+++++... . ....|+
T Consensus 86 ~v~~~a~~~~~---~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 162 (342)
T d1y1pa1 86 GVAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAK 162 (342)
T ss_dssp EEEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHH
T ss_pred hhhhhcccccc---cccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccc
Confidence 99999997543 35567888999999999999999876566999999976543211 1 111121
Q ss_pred ----CCCCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCC---CChHHHHHHHHHcCCCCceeecCC
Q 013602 242 ----DRTDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRP---DMAYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 242 ----~~~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
..+..|.+.|+.+|.++|.+++.+.+++ +++++++||+.+|||...+ ......++..+++++.....
T Consensus 163 ~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~---- 238 (342)
T d1y1pa1 163 TLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL---- 238 (342)
T ss_dssp HSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH----
T ss_pred cccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCccc----
Confidence 1122455789999999999999998876 5788899999999986432 23566778888888877664
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCCCC
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNG 392 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~ 392 (439)
.+...++|+|++|+|++++.++++.... +.|++++++.+|+.|++++|.+.++...-....+.....
T Consensus 239 ~~~~~~~~v~v~Dva~~~i~~l~~~~~~-------------g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~~~~~ 305 (342)
T d1y1pa1 239 ALMPPQYYVSAVDIGLLHLGCLVLPQIE-------------RRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQD 305 (342)
T ss_dssp HTCCSEEEEEHHHHHHHHHHHHHCTTCC-------------SCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred CCccceeeeeHHHHHHHHHHhhcCcccc-------------ceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCccCcc
Confidence 4556789999999999999998876532 456688889999999999999998532111111111111
Q ss_pred CCCcccCChHHHHHHcCCCccCcHHHHHHHHHH
Q 013602 393 DVPFTHANISLAQRELGYKPTTDLQTGLKKFVR 425 (439)
Q Consensus 393 ~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~v~ 425 (439)
..........+..+.|||.|.++++|+|+++++
T Consensus 306 ~~~~~~~~s~~~~k~lg~~~~~~lee~i~d~I~ 338 (342)
T d1y1pa1 306 LSKFDTAPSLEILKSLGRPGWRSIEESIKDLVG 338 (342)
T ss_dssp CCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHC
T ss_pred cccccchHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 111111223455577999999999999999976
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-34 Score=273.83 Aligned_cols=293 Identities=23% Similarity=0.360 Sum_probs=202.8
Q ss_pred EEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHH-HHHhhcc---cCcc
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMAL-LKKLFDV---VSFT 176 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-~~~~~~~---~~~d 176 (439)
||||||+||||++|+++|+++|+ +|+++++...... ... .... . ..|..+.+. ....... ..++
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~----~~~--~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~ 70 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK----FVN--LVDL-N----IADYMDKEDFLIQIMAGEEFGDVE 70 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG----GHH--HHTS-C----CSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcch----hhc--cccc-c----hhhhccchHHHHHHhhhhcccchh
Confidence 89999999999999999999995 7988875332110 001 1111 1 122223222 2222221 2458
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~ 256 (439)
+|+|.|+.... ...+.......|+.++.+++++++..+. ++|+.||..+|+........++... .|.+.|+.+|.
T Consensus 71 ~i~~~aa~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~i--~~v~~ss~~~~~~~~~~~~~~~~~~-~~~~~Y~~~K~ 145 (307)
T d1eq2a_ 71 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKF 145 (307)
T ss_dssp EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCSSGGGC-CCSSHHHHHHH
T ss_pred hhhhhcccccc--cccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccc
Confidence 99999986433 3456667888899999999999999986 6788888777776655555544443 67899999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHH
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLA 332 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 332 (439)
++|.++.++.++++++++++||++||||+.... .....+...+..++...++. +++...++|+|++|++.++..
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~r~~~~v~d~~~~~~~ 223 (307)
T d1eq2a_ 146 LFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFE--GSENFKRDFVYVGDVADVNLW 223 (307)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC---------------CBCEEEHHHHHHHHHH
T ss_pred hhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeec--CccceeeeeeecccHHHHHHH
Confidence 999999999999999999999999999976533 34556677777777665532 567888999999999999999
Q ss_pred HHhhchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCccccccccCCC---CCCCCcccCChHHHHHHcC
Q 013602 333 ALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR---NGDVPFTHANISLAQRELG 409 (439)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~---~~~~~~~~~d~~k~~~~LG 409 (439)
+++.... +.||+++++.+|+.|+++++.+..+ +..+.+.+.+. .........|++|+++.+|
T Consensus 224 ~~~~~~~--------------~~~~~~~~~~~si~~i~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~ 288 (307)
T d1eq2a_ 224 FLENGVS--------------GIFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGY 288 (307)
T ss_dssp HHHHCCC--------------EEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHHTTC
T ss_pred Hhhhccc--------------cccccccccchhHHHHHHHHHHhcC-CCCeeEeeCCccCCCCCceeeecCHHHHHHHHC
Confidence 9886542 7899999999999999999988765 33444443322 2334455679999999999
Q ss_pred CCccCcHHHHHHHHHHHH
Q 013602 410 YKPTTDLQTGLKKFVRWY 427 (439)
Q Consensus 410 ~~p~~~l~e~l~~~v~~~ 427 (439)
|+|.++++|||+++++|+
T Consensus 289 ~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 289 DKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp CCCCCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999999996
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.5e-33 Score=264.55 Aligned_cols=286 Identities=17% Similarity=0.174 Sum_probs=222.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|||||||||||++|+++|.++|+.| .+++... .+.+|++|.+.+++++++.+||+||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~--------------------~~~~Dl~~~~~~~~~i~~~~~D~Vi 59 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSK--------------------EFCGDFSNPKGVAETVRKLRPDVIV 59 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCS--------------------SSCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCc--------------------cccCcCCCHHHHHHHHHHcCCCEEE
Confidence 679999999999999999999999754 4454221 1347999999999999999999999
Q ss_pred EcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 013602 180 HLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 259 (439)
Q Consensus 180 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E 259 (439)
|+||......+..++...+.+|+.++.++++++++.+. +++++||..+|+.....++.|++++ .|.+.|+.+|.++|
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~~ss~~~~~~~~~~~~~E~~~~-~p~~~y~~~k~~~e 136 (298)
T d1n2sa_ 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYSTDYVFPGTGDIPWQETDAT-SPLNVYGKTKLAGE 136 (298)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEEEGGGSCCCTTCCBCTTSCC-CCSSHHHHHHHHHH
T ss_pred EecccccccccccCccccccccccccccchhhhhcccc--ccccccccccccCCCCCCCcccccc-CCCchHhhhhhhhh
Confidence 99998877778889999999999999999999998874 8999999999998888888888877 78899999999999
Q ss_pred HHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchh
Q 013602 260 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 260 ~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
.+++.. .....++|++..|+..+. .....+...+..+..+... +...++++|+.|+++++..+++....
T Consensus 137 ~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~i~~~~~ 205 (298)
T d1n2sa_ 137 KALQDN----CPKHLIFRTSWVYAGKGN--NFAKTMLRLAKERQTLSVI-----NDQYGAPTGAELLADCTAHAIRVALN 205 (298)
T ss_dssp HHHHHH----CSSEEEEEECSEECSSSC--CHHHHHHHHHHHCSEEEEE-----CSCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred hhHHhh----hcccccccccceeeccCC--ccchhhhhhhcccceeecc-----cceeecccccchHHHHHHHHHhhhhc
Confidence 988774 445677777776654332 2333455556666665553 45788999999999999988875443
Q ss_pred ccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcc---cccc-ccCCCC------CCCCcccCChHHHHHHcC
Q 013602 340 STGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKA---KRNI-MKLPRN------GDVPFTHANISLAQRELG 409 (439)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~---~~~~-~~~~~~------~~~~~~~~d~~k~~~~LG 409 (439)
.. ..+++||+++++.++..|+++.+.+..+... .... .+.+.. ..+.+..+|++|+++.||
T Consensus 206 ~~---------~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~ 276 (298)
T d1n2sa_ 206 KP---------EVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFD 276 (298)
T ss_dssp CG---------GGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHT
T ss_pred cc---------cccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHC
Confidence 21 1338999999999999999999988765322 1111 011111 012244689999999999
Q ss_pred CCccCcHHHHHHHHHHHHHHH
Q 013602 410 YKPTTDLQTGLKKFVRWYLSY 430 (439)
Q Consensus 410 ~~p~~~l~e~l~~~v~~~~~~ 430 (439)
|+|. ++++||+++++++...
T Consensus 277 ~~~~-~~~~gl~~~i~~~~~~ 296 (298)
T d1n2sa_ 277 LILP-QWELGVKRMLTEMFTT 296 (298)
T ss_dssp CCCC-BHHHHHHHHHHHHHSC
T ss_pred CCCC-cHHHHHHHHHHHHHhh
Confidence 9998 8999999999998753
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.95 E-value=1.4e-27 Score=226.93 Aligned_cols=247 Identities=15% Similarity=0.141 Sum_probs=182.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+++|||||||||||++++++|+++|++|++++|+........ ..........+++++++|+.|.+.+.+++++. +.+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~-~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~--~~~ 79 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDK-VQMLLYFKQLGAKLIEASLDDHQRLVDALKQV--DVV 79 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHH-HHHHHHHHTTTCEEECCCSSCHHHHHHHHTTC--SEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhH-HHHHhhhccCCcEEEEeecccchhhhhhccCc--chh
Confidence 467999999999999999999999999999999766544332 22334445678999999999999999999988 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAG 258 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~ 258 (439)
+|+++.... ..|..++.++++++.+.+.. ++|+.||.+++..... .+..+...|...|.+.
T Consensus 80 ~~~~~~~~~-----------~~~~~~~~~~l~~a~~~~~~-~~v~~Ss~g~~~~~~~-------~~~~~~~~~~~~~~~~ 140 (312)
T d1qyda_ 80 ISALAGGVL-----------SHHILEQLKLVEAIKEAGNI-KRFLPSEFGMDPDIME-------HALQPGSITFIDKRKV 140 (312)
T ss_dssp EECCCCSSS-----------STTTTTHHHHHHHHHHSCCC-SEEECSCCSSCTTSCC-------CCCSSTTHHHHHHHHH
T ss_pred hhhhhhccc-----------ccchhhhhHHHHHHHHhcCC-cEEEEeeccccCCCcc-------cccchhhhhhHHHHHH
Confidence 999875322 13555677889999988865 7788888776543221 1224556777777776
Q ss_pred HHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 259 EEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 259 E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
+.+.. ..+++++++||+.+||+....... .+......+..+.++ ++++..++|+|++|+|++++.+++++.
T Consensus 141 ~~~~~----~~~~~~~i~r~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~l~~~~ 211 (312)
T d1qyda_ 141 RRAIE----AASIPYTYVSSNMFAGYFAGSLAQ--LDGHMMPPRDKVLIY---GDGNVKGIWVDEDDVGTYTIKSIDDPQ 211 (312)
T ss_dssp HHHHH----HTTCCBCEEECCEEHHHHTTTSSC--TTCCSSCCSSEECCB---TTSCSEEEEECHHHHHHHHHHHTTCGG
T ss_pred HHhhc----ccccceEEeccceeecCCccchhh--HHHHhhhcccccccc---cccccccceeeHHHHHHHHHHHhcCcc
Confidence 66543 469999999999999975432111 011112234444454 678899999999999999999998876
Q ss_pred hccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccccccc
Q 013602 339 KSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK 387 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~ 387 (439)
... +..|++++++.+|+.|+++.+.+.+|.+.+...++
T Consensus 212 ~~~-----------~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~ 249 (312)
T d1qyda_ 212 TLN-----------KTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249 (312)
T ss_dssp GSS-----------SEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred ccC-----------ceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECC
Confidence 432 13566666788999999999999999887766554
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.95 E-value=1.1e-27 Score=226.55 Aligned_cols=243 Identities=19% Similarity=0.172 Sum_probs=178.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+|+|||||||||||++++++|+++|++|++++|+...................++.++.+|+.+.+.+.+.++.. +.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~ 79 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV--DV 79 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC--SE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc--ee
Confidence 3578999999999999999999999999999999877655444444444555678999999999999999999987 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKA 257 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a 257 (439)
|+|+++.. +..++.+++++++..+.. ++++.||....... .....+...+...+..
T Consensus 80 vi~~~~~~---------------~~~~~~~~~~a~~~~~~~-~~~~~s~~~~~~~~--------~~~~~~~~~~~~~~~~ 135 (307)
T d1qyca_ 80 VISTVGSL---------------QIESQVNIIKAIKEVGTV-KRFFPSEFGNDVDN--------VHAVEPAKSVFEVKAK 135 (307)
T ss_dssp EEECCCGG---------------GSGGGHHHHHHHHHHCCC-SEEECSCCSSCTTS--------CCCCTTHHHHHHHHHH
T ss_pred eeeccccc---------------ccchhhHHHHHHHHhccc-cceeeecccccccc--------cccccccccccccccc
Confidence 99998753 223456788888888865 88888876543211 1111223345555555
Q ss_pred HHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhc
Q 013602 258 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337 (439)
Q Consensus 258 ~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 337 (439)
.+.++. +.+++++++||+++||++.... ..+.....++.....+ +.+++.++|+|++|+|++++.+++.+
T Consensus 136 ~~~~~~----~~~~~~~i~r~~~v~g~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~~~~~~l~~~ 205 (307)
T d1qyca_ 136 VRRAIE----AEGIPYTYVSSNCFAGYFLRSL---AQAGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTIKAVDDP 205 (307)
T ss_dssp HHHHHH----HHTCCBEEEECCEEHHHHTTTT---TCTTCSSCCSSEEEEE---TTSCCEEEEECHHHHHHHHHTTSSCG
T ss_pred ccchhh----ccCCCceecccceecCCCccch---hhhhhhhhhcccceee---ecccccccCCcHHHHHHHHHHHhcCh
Confidence 555444 4599999999999999865421 1112223344444444 67899999999999999999999877
Q ss_pred hhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccccccc
Q 013602 338 EKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK 387 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~ 387 (439)
.... +.+|++++++.+|+.|+++.+.+.+|.+.++..+|
T Consensus 206 ~~~~-----------~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~ 244 (307)
T d1qyca_ 206 RTLN-----------KTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244 (307)
T ss_dssp GGTT-----------EEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred hhcC-----------ceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECC
Confidence 6422 14566677889999999999999999887766554
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.5e-26 Score=204.35 Aligned_cols=193 Identities=16% Similarity=0.031 Sum_probs=151.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
|.+|+|+||||||+||++++++|+++|++|++++|+.++.. .....+++++.+|++|.+++.++++++ |
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~---------~~~~~~~~~~~gD~~d~~~l~~al~~~--d 69 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP---------SEGPRPAHVVVGDVLQAADVDKTVAGQ--D 69 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC---------SSSCCCSEEEESCTTSHHHHHHHHTTC--S
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc---------cccccccccccccccchhhHHHHhcCC--C
Confidence 46789999999999999999999999999999999544321 223468999999999999999999998 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~ 256 (439)
+|||++|..... + ..+++..++.++++++++++.. |||++||.++++..... + .....|...|.
T Consensus 70 ~vi~~~g~~~~~----~---~~~~~~~~~~~l~~aa~~~~v~-r~i~~ss~~~~~~~~~~-------~-~~~~~~~~~~~ 133 (205)
T d1hdoa_ 70 AVIVLLGTRNDL----S---PTTVMSEGARNIVAAMKAHGVD-KVVACTSAFLLWDPTKV-------P-PRLQAVTDDHI 133 (205)
T ss_dssp EEEECCCCTTCC----S---CCCHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCTTCS-------C-GGGHHHHHHHH
T ss_pred EEEEEeccCCch----h---hhhhhHHHHHHHHHHHHhcCCC-eEEEEeeeeccCCCccc-------c-ccccccchHHH
Confidence 999999863221 1 1246778999999999999965 99999999987643321 1 22357889999
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhh
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
++|.++++ .|+++++|||+.+++.... +. .... .++.....|++++|+|++++.++++
T Consensus 134 ~~e~~l~~----~~~~~tiirp~~~~~~~~~--------------~~-~~~~---~~~~~~~~~i~~~DvA~~~~~~l~~ 191 (205)
T d1hdoa_ 134 RMHKVLRE----SGLKYVAVMPPHIGDQPLT--------------GA-YTVT---LDGRGPSRVISKHDLGHFMLRCLTT 191 (205)
T ss_dssp HHHHHHHH----TCSEEEEECCSEEECCCCC--------------SC-CEEE---SSSCSSCSEEEHHHHHHHHHHTTSC
T ss_pred HHHHHHHh----cCCceEEEecceecCCCCc--------------cc-EEEe---eCCCCCCCcCCHHHHHHHHHHHhCC
Confidence 99988764 5999999999999864322 11 2222 2456667899999999999999987
Q ss_pred ch
Q 013602 337 AE 338 (439)
Q Consensus 337 ~~ 338 (439)
+.
T Consensus 192 ~~ 193 (205)
T d1hdoa_ 192 DE 193 (205)
T ss_dssp ST
T ss_pred CC
Confidence 66
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.4e-25 Score=205.11 Aligned_cols=201 Identities=12% Similarity=0.059 Sum_probs=155.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
|.+|+|||||||||||++++++|+++|. +|++++|+....... ....+....+|+.+.+++.++++++
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~---------~~~~i~~~~~D~~~~~~~~~~~~~~- 81 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE---------AYKNVNQEVVDFEKLDDYASAFQGH- 81 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG---------GGGGCEEEECCGGGGGGGGGGGSSC-
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc---------ccceeeeeeeccccccccccccccc-
Confidence 6778999999999999999999999994 899999966433221 2347888889999999999999988
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAAT 254 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~s 254 (439)
|+|||+||.... ..+...+.++|+.++.+++++|++.+.. +||++||.++++ .+.+.|+.+
T Consensus 82 -d~vi~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~v~-~fi~~Ss~~~~~--------------~~~~~Y~~~ 142 (232)
T d2bkaa1 82 -DVGFCCLGTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSSKGADK--------------SSNFLYLQV 142 (232)
T ss_dssp -SEEEECCCCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHH
T ss_pred -cccccccccccc---ccchhhhhhhcccccceeeecccccCcc-ccccCCcccccc--------------CccchhHHH
Confidence 999999986422 2345577899999999999999999965 999999998753 345789999
Q ss_pred HHHHHHHHHHHHhHhCC-cEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHH
Q 013602 255 KKAGEEIAHTYNHIYGL-SLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAA 333 (439)
Q Consensus 255 K~a~E~~~~~~~~~~gi-~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 333 (439)
|..+|..+.+ .++ +++|||||.|||++... .....+...++...+ ........|+++|+|++++.+
T Consensus 143 K~~~E~~l~~----~~~~~~~IlRP~~i~G~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~I~~~dvA~a~i~~ 209 (232)
T d2bkaa1 143 KGEVEAKVEE----LKFDRYSVFRPGVLLCDRQES-RPGEWLVRKFFGSLP--------DSWASGHSVPVVTVVRAMLNN 209 (232)
T ss_dssp HHHHHHHHHT----TCCSEEEEEECCEEECTTGGG-SHHHHHHHHHHCSCC--------TTGGGGTEEEHHHHHHHHHHH
T ss_pred HHHhhhcccc----ccccceEEecCceeecCCCcC-cHHHHHHHHHhhccC--------CcccCCCeEEHHHHHHHHHHH
Confidence 9999998766 366 48999999999987652 222233444444322 222334579999999999988
Q ss_pred Hhhchh
Q 013602 334 LDTAEK 339 (439)
Q Consensus 334 l~~~~~ 339 (439)
+..+..
T Consensus 210 ~~~~~~ 215 (232)
T d2bkaa1 210 VVRPRD 215 (232)
T ss_dssp HTSCCC
T ss_pred HhcCcc
Confidence 876653
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=8e-25 Score=200.88 Aligned_cols=225 Identities=20% Similarity=0.161 Sum_probs=164.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
.+||++|||||+++||++++++|+++|++|++.+|+.+ +.........++.++.+|++|.++++++++++ ++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~-------~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS-------DLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH-------HHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH-------HHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999321 11111123357899999999999999999988 68
Q ss_pred cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 176 d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p 247 (439)
|++|||||..... .+.++++..+++|+.++..+.+++. +.+...++|++||...+. ....
T Consensus 76 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~~ 143 (242)
T d1cyda_ 76 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV------------TFPN 143 (242)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTT
T ss_pred eEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc------------cCCc
Confidence 9999999975432 2345567899999999888877653 223334999999976532 1133
Q ss_pred CChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
...|+.+|.+.+.+++.++.++ |+++++|.||.|..+.......-..+...+....+... +...+
T Consensus 144 ~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R------------~~~pe 211 (242)
T d1cyda_ 144 LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRK------------FAEVE 211 (242)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSS------------CBCHH
T ss_pred cccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcCCCCC------------CcCHH
Confidence 5789999999999999999884 89999999999976521100000122333333332222 46689
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
|+|.+++.++...... ..|+++.+.+|-
T Consensus 212 eva~~v~fL~S~~s~~----------itG~~i~vDGG~ 239 (242)
T d1cyda_ 212 DVVNSILFLLSDRSAS----------TSGGGILVDAGY 239 (242)
T ss_dssp HHHHHHHHHHSGGGTT----------CCSSEEEESTTG
T ss_pred HHHHHHHHHhCchhcC----------cCCceEEeCcch
Confidence 9999999988654432 345899987763
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.8e-24 Score=198.88 Aligned_cols=224 Identities=19% Similarity=0.187 Sum_probs=164.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+ ..........++..+.+|++|.++++++++++ ++
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~-------~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA-------DLDSLVRECPGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH-------HHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH-------HHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 68999999999999999999999999999999999321 11111122357899999999999999999987 78
Q ss_pred cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 176 d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p 247 (439)
|++|||||..... .+.++++..+++|+.++..+.+++.+ .+...+||++||..... ....
T Consensus 78 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------~~~~ 145 (244)
T d1pr9a_ 78 DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------AVTN 145 (244)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTT
T ss_pred eEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc------------cccc
Confidence 9999999985432 23456678999999998777776532 22234999999976532 1133
Q ss_pred CChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
...|+.+|.+.+.+++.++.++ |+++++|.||.|..+.......-......+....+... +...+
T Consensus 146 ~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R------------~~~pe 213 (244)
T d1pr9a_ 146 HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGK------------FAEVE 213 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTTCS------------CBCHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCCCCC------------CcCHH
Confidence 5789999999999999999884 89999999999987632111111123333444333222 56789
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
|+|.+++.++...... ..|+++.+.+|
T Consensus 214 evA~~v~fL~S~~a~~----------itG~~i~vDGG 240 (244)
T d1pr9a_ 214 HVVNAILFLLSDRSGM----------TTGSTLPVEGG 240 (244)
T ss_dssp HHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred HHHHHHHHHhCchhCC----------cCCcEEEECcc
Confidence 9999999988654432 34588988765
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=3.2e-24 Score=196.81 Aligned_cols=222 Identities=16% Similarity=0.113 Sum_probs=165.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|++|||||+++||++++++|+++|++|++.+|+.+ . ..+.....++.++.+|++|+++++++++.+
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~-------~-l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG-------P-LREAAEAVGAHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH-------H-HHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH-------H-HHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999321 1 112223447889999999999999988776
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN---PQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|++|||||..... .+.++++..+++|+.|+.++.+++.+.. ...+++++||.+..+
T Consensus 75 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~------------- 141 (242)
T d1ulsa_ 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG------------- 141 (242)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC-------------
T ss_pred cCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccC-------------
Confidence 789999999975432 3345677899999999888888764321 123777888765432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
......|+.+|.+.+.+++.++.++ |+++++|.||.|..+-... ........+....+... +.
T Consensus 142 ~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~--~~~~~~~~~~~~~pl~R------------~~ 207 (242)
T d1ulsa_ 142 NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK--VPEKVREKAIAATPLGR------------AG 207 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS--SCHHHHHHHHHTCTTCS------------CB
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhc--CCHHHHHHHHhcCCCCC------------CC
Confidence 1346789999999999999999885 8999999999998764331 11233344444444333 45
Q ss_pred eHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 322 YIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
..+|+|.+++.++...... ..|+++.+.+|..
T Consensus 208 ~pedia~~v~fL~S~~s~~----------itG~~i~vDGG~t 239 (242)
T d1ulsa_ 208 KPLEVAYAALFLLSDESSF----------ITGQVLFVDGGRT 239 (242)
T ss_dssp CHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhchhhCC----------CCCcEEEECCCcc
Confidence 6799999999988654432 3458999887653
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.93 E-value=2.2e-24 Score=198.63 Aligned_cols=226 Identities=10% Similarity=0.027 Sum_probs=157.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|++|||||+++||+++++.|+++|++|++.+|+.. .... ........++.++.+|++|+++++++++.+
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~----~~~~-~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 77 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA----PEAE-AAIRNLGRRVLTVKCDVSQPGDVEAFGKQVIST 77 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC----HHHH-HHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch----HHHH-HHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999543 1111 111122357889999999999999988765
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||..... .+.++++..+++|+.|+..+.+++ ++.+. .+||++||.....
T Consensus 78 ~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~Iv~isS~~~~~------------ 144 (247)
T d2ew8a1 78 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGW-GRIINLTSTTYWL------------ 144 (247)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGGS------------
T ss_pred cCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCC-CCccccccchhcc------------
Confidence 789999999985432 234567789999999987777765 44443 3999999976532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
+......|+.+|.+.+.+++.++.++ |+++++|.||.|..+...... ...... .......+ ..-+
T Consensus 145 ~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~-~~~~~~-~~~~~~~~----------l~r~ 212 (247)
T d2ew8a1 145 KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASA-LSAMFD-VLPNMLQA----------IPRL 212 (247)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------CTTSS----------SCSC
T ss_pred cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccc-cchhHH-HHHHHhcc----------CCCC
Confidence 11345789999999999999999884 899999999999876432110 000000 01111011 1124
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 213 ~~pedvA~~v~fL~S~~s~~----------itG~~i~vDGG~ 244 (247)
T d2ew8a1 213 QVPLDLTGAAAFLASDDASF----------ITGQTLAVDGGM 244 (247)
T ss_dssp CCTHHHHHHHHHHTSGGGTT----------CCSCEEEESSSC
T ss_pred CCHHHHHHHHHHHhCchhcC----------CcCCeEEECCCE
Confidence 56799999999988654432 345899887763
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.92 E-value=2e-24 Score=200.40 Aligned_cols=230 Identities=12% Similarity=0.052 Sum_probs=165.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
++||++|||||+++||++++++|+++|++|++.+|+.+ ...+...+.. ....+.++++|++|+++++++++.+
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~----~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE----DEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAI 80 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH----HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999542 1111111221 2246788999999999999888765
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|++|||||..... .+.++++..+++|+.++.++.+++ ++.+..++||++||.+...
T Consensus 81 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~---------- 150 (261)
T d1geea_ 81 KEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI---------- 150 (261)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS----------
T ss_pred HHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc----------
Confidence 789999999985432 235566789999999977777665 4444444799999976532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
+......|+.+|.+.+.+++.++.++ ||++++|.||.|..|.......-......+.+..+...
T Consensus 151 --~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R----------- 217 (261)
T d1geea_ 151 --PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGY----------- 217 (261)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSS-----------
T ss_pred --cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCCCC-----------
Confidence 11335789999999999999999885 89999999999976632100000122223333333222
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+...+|+|.+++.++...... ..|+++.+.+|..+
T Consensus 218 -~~~pediA~~v~fL~S~~s~~----------itG~~i~vDGG~sl 252 (261)
T d1geea_ 218 -IGEPEEIAAVAAWLASSEASY----------VTGITLFADGGMTL 252 (261)
T ss_dssp -CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred -CCCHHHHHHHHHHHhCchhcC----------CcCCeEEECCCeeC
Confidence 456899999999988654432 34589999887543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.3e-24 Score=200.61 Aligned_cols=228 Identities=16% Similarity=0.118 Sum_probs=163.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++|++|||||+++||+++++.|+++|++|++.+|+.+. ..+...+.. ...++.++.+|++|+++++++++.+
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~----~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEE----ASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK 78 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999994321 111111111 2346888999999999999988775
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|++|||||..... .+.++++..+++|+.++..+.+++. +.+ ..+||++||.....
T Consensus 79 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i~S~~~~~---------- 147 (251)
T d1vl8a_ 79 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGSLTVEE---------- 147 (251)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECCGGGTC----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc-cccccccccchhcc----------
Confidence 789999999975432 2455667899999999888887764 333 34999999854311
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
........|+.+|.+.+.+++.++.++ |+++++|.||.|-.+.......-......+.+..+...
T Consensus 148 -~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R----------- 215 (251)
T d1vl8a_ 148 -VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGR----------- 215 (251)
T ss_dssp -CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSS-----------
T ss_pred -ccCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCCC-----------
Confidence 011235689999999999999999884 89999999999977643210000123333444433322
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 216 -~~~pedvA~~v~fL~S~~a~~----------itG~~i~vDGG~ 248 (251)
T d1vl8a_ 216 -TGVPEDLKGVAVFLASEEAKY----------VTGQIIFVDGGW 248 (251)
T ss_dssp -CBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred -CCCHHHHHHHHHHHhCchhCC----------CcCcEEEeCcCe
Confidence 355799999999988654432 345899987764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.92 E-value=1.6e-24 Score=200.79 Aligned_cols=231 Identities=14% Similarity=0.113 Sum_probs=164.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+..+..... ........++.++.+|++|+++++++++.+
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAA-VLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999943211111111 111112347889999999999999888775
Q ss_pred --CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|++|||||+.... .+.++++..+++|+.|+.++.+++. +.+ ..+||++||...+-
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~----------- 148 (258)
T d1iy8a_ 81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIR----------- 148 (258)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS-----------
T ss_pred hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccccHhhcc-----------
Confidence 689999999975321 2345667899999999888887663 334 33999999976532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCC------CCChHHHHHHHHHcCCCCceeecCCC
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGR------PDMAYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
.......|+.+|.+.+.+++.++.++ ||++++|.||.|..|... .......+...+.+..+...
T Consensus 149 -~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R------ 221 (258)
T d1iy8a_ 149 -GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKR------ 221 (258)
T ss_dssp -BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCS------
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCCC------
Confidence 11345789999999999999999884 899999999999765210 00001122333333333322
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+...+|+|.+++.++...... ..|+++.+.+|..
T Consensus 222 ------~~~p~dvA~~v~fL~S~~s~~----------itG~~i~VDGG~s 255 (258)
T d1iy8a_ 222 ------YGEAPEIAAVVAFLLSDDASY----------VNATVVPIDGGQS 255 (258)
T ss_dssp ------CBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTTT
T ss_pred ------CcCHHHHHHHHHHHhCchhcC----------CcCceEEcCcchh
Confidence 466899999999998654432 3458999988754
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.92 E-value=5.4e-24 Score=195.28 Aligned_cols=219 Identities=19% Similarity=0.125 Sum_probs=161.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+ ..+...+.. ...+.++++|++|+++++++++.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE-----EGKAMAAEL-ADAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHT-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH-----HHHHHHHHh-hCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999332 111111112 346889999999999999888765
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||..... .+.++++..+++|+.++.++.+.+ ++.+. .+||++||...+.
T Consensus 78 ~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~Ii~isS~~~~~------------ 144 (244)
T d1nffa_ 78 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGR-GSIINISSIEGLA------------ 144 (244)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS------------
T ss_pred hCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCc-ceEEecccccccc------------
Confidence 689999999985442 234556789999999988877765 34442 3999999976532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..|.... .+-... .....-+
T Consensus 145 ~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~--------------~~~~~~-----~~pl~R~ 205 (244)
T d1nffa_ 145 GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW--------------VPEDIF-----QTALGRA 205 (244)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT--------------SCTTCS-----CCSSSSC
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhh--------------hhHHHH-----hccccCC
Confidence 11345789999999999999999885 8999999999997763220 000000 0111236
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
...+|+|.+++.++...... ..|+++.+.+|-.
T Consensus 206 ~~p~diA~~v~fL~s~~s~~----------itG~~i~vDGG~~ 238 (244)
T d1nffa_ 206 AEPVEVSNLVVYLASDESSY----------STGAEFVVDGGTV 238 (244)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred CCHHHHHHHHHHHhChhhCC----------CcCCEEEECCCee
Confidence 78899999999998654432 3458999877643
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=1.2e-24 Score=200.33 Aligned_cols=225 Identities=16% Similarity=0.088 Sum_probs=162.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
.+||++|||||+++||+++++.|+++|++|++.+|+.+. . +.....+..++++|++|.++++++++.+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~-----~----~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 73 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-----K----EVAEAIGGAFFQVDLEDERERVRFVEEAAYA 73 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-----H----HHHHHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH-----H----HHHHHcCCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999995431 1 1112235678999999999999888775
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||..... .++++++..+++|+.|+.++.+++. +.+ ..+||++||...+.
T Consensus 74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Ii~isS~~~~~------------ 140 (248)
T d2d1ya1 74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASVQGLF------------ 140 (248)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTS------------
T ss_pred cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc-cccccccccccccc------------
Confidence 789999999975442 2345567899999999888887764 333 23999999976532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC----CChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP----DMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|-.|.... ..........+....+.
T Consensus 141 ~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pl----------- 209 (248)
T d2d1ya1 141 AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHAL----------- 209 (248)
T ss_dssp BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTT-----------
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCCC-----------
Confidence 11345789999999999999999884 8999999999987641100 00000011111111111
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
.-+...+|+|.+++.++...... ..|+++.+.+|-..+
T Consensus 210 -~R~~~pedia~~v~fL~S~~s~~----------itG~~i~vDGG~tas 247 (248)
T d2d1ya1 210 -RRLGKPEEVAEAVLFLASEKASF----------ITGAILPVDGGMTAS 247 (248)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGB
T ss_pred -CCCcCHHHHHHHHHHHhCchhcC----------CCCcEEEcCcCcccc
Confidence 12567899999999998654432 345899998775443
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.92 E-value=2.3e-24 Score=197.06 Aligned_cols=215 Identities=14% Similarity=0.075 Sum_probs=159.2
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.++|++|||||+++||++++++|+++|++|++.+|+.+. ..++..+++|++|+++++++++.+
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~--------------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 69 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA--------------PKGLFGVEVDVTDSDAVDRAFTAVEE 69 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC--------------CTTSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch--------------hcCceEEEEecCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999996542 236788999999999999888776
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|++|||||..... .+.++++..+++|+.++..+.+.+ ++.+. .+||++||.....
T Consensus 70 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-g~Iv~isS~~~~~----------- 137 (237)
T d1uzma1 70 HQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKF-GRMIFIGSVSGLW----------- 137 (237)
T ss_dssp HHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCCCC-------------
T ss_pred hcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCC-CceEEEcchhhcc-----------
Confidence 689999999975432 234566789999999977776654 44553 3999999976532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..+.... ........+.+..+.. -
T Consensus 138 -~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~--~~~~~~~~~~~~~pl~------------R 202 (237)
T d1uzma1 138 -GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA--LDERIQQGALQFIPAK------------R 202 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH--SCHHHHHHHGGGCTTC------------S
T ss_pred -CCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhc--cCHHHHHHHHhcCCCC------------C
Confidence 11345789999999999999999884 8999999999997652110 0011222222222222 2
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 203 ~~~pedvA~~v~fL~S~~s~~----------itG~~i~vdGG 234 (237)
T d1uzma1 203 VGTPAEVAGVVSFLASEDASY----------ISGAVIPVDGG 234 (237)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhcC----------CcCCeEEECCC
Confidence 467899999999988654432 34589988776
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=3.9e-24 Score=196.34 Aligned_cols=223 Identities=14% Similarity=0.080 Sum_probs=162.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++||+++||||+++||+++++.|+++|++|++.+|+.+ ..+...+.. ..++.++.+|++|.++++++++.+
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~-----~l~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN-----GAQAISDYL-GANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHHh-CCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 57999999999999999999999999999999999332 111111222 346788999999999998888765
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||..... .+.++++..+++|+.++..+.+++ ++.+. .+||++||...+.
T Consensus 76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~II~isS~~~~~------------ 142 (243)
T d1q7ba_ 76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRH-GRIITIGSVVGTM------------ 142 (243)
T ss_dssp TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHH------------
T ss_pred cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCC-CEeeeecchhhcC------------
Confidence 689999999975443 234556789999999988887776 34442 3999999965432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|-.+.... ........+.+..+... +
T Consensus 143 ~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl~R------------~ 208 (243)
T d1q7ba_ 143 GNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRA--LSDDQRAGILAQVPAGR------------L 208 (243)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--SCHHHHHHHHTTCTTSS------------C
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhh--hhhhHHHHHHhcCCCCC------------C
Confidence 11345789999999999999999884 8999999999996542110 11122233333333222 4
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 209 ~~pedvA~~v~fL~S~~s~~----------itGq~i~vdGG~ 240 (243)
T d1q7ba_ 209 GGAQEIANAVAFLASDEAAY----------ITGETLHVNGGM 240 (243)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred CCHHHHHHHHHHHhCchhcC----------CcCCeEEECCCe
Confidence 66899999999998654432 345899987764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.1e-24 Score=199.68 Aligned_cols=226 Identities=15% Similarity=0.158 Sum_probs=165.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
++||++|||||+++||++++++|+++|++|++.+|+.+. ..+...+.. ....+.++++|++|+++++++++.+
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA----ANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999994321 111111111 2347889999999999999888765
Q ss_pred ---CccEEEEcccccCcc---ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR---YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~---~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||..... .+.++++..+++|+.|+.++.+.+ ++.+. .+||++||...+.
T Consensus 85 ~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-g~Ii~isS~~~~~------------ 151 (255)
T d1fmca_ 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG-GVILTITSMAAEN------------ 151 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTC------------
T ss_pred HcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccc-cccccccccchhc------------
Confidence 789999999975432 345566789999999988777765 34443 3899999976532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..+..... .-......+.+..+... +
T Consensus 152 ~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~-~~~e~~~~~~~~~pl~R------------~ 218 (255)
T d1fmca_ 152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV-ITPEIEQKMLQHTPIRR------------L 218 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-CCHHHHHHHHHTCSSCS------------C
T ss_pred cccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhcc-CCHHHHHHHHhcCCCCC------------C
Confidence 11345799999999999999999884 89999999999976521100 11223333444333322 4
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
...+|+|.+++.++...... ..|+++.+.+|.
T Consensus 219 g~pedvA~~v~fL~S~~s~~----------itG~~i~vDGG~ 250 (255)
T d1fmca_ 219 GQPQDIANAALFLCSPAASW----------VSGQILTVSGGG 250 (255)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHhCchhcC----------CcCCEEEECcCc
Confidence 56799999999998654432 345899998875
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.92 E-value=1.1e-23 Score=194.49 Aligned_cols=224 Identities=11% Similarity=0.065 Sum_probs=163.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|++|||||+++||++++++|+++|++|++.+|+.+ .......+.. ...++.++.+|++|+++++++++.+
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~----~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK----SCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH----HHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999432 1111111211 2246889999999999999988765
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|++|||||..... .+.++++..+++|+.++..+.+++ ++.+. .+||++||...+.
T Consensus 84 ~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~~~~~----------- 151 (251)
T d2c07a1 84 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY-GRIINISSIVGLT----------- 151 (251)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHH-----------
T ss_pred hcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCC-eEEEEECCHHhcC-----------
Confidence 789999999975432 234566789999999987777765 34443 3999999966532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..+.... ....+...+....+...
T Consensus 152 -~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~--~~~~~~~~~~~~~pl~R------------ 216 (251)
T d2c07a1 152 -GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK--ISEQIKKNIISNIPAGR------------ 216 (251)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-------CCHHHHHHHHTTCTTSS------------
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccc--cCHHHHHHHHhcCCCCC------------
Confidence 11345789999999999999999884 8999999999998764331 12234444444443332
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 217 ~~~pedvA~~v~fL~S~~s~~----------itG~~i~vDGG 248 (251)
T d2c07a1 217 MGTPEEVANLACFLSSDKSGY----------INGRVFVIDGG 248 (251)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhCC----------CcCcEEEECCC
Confidence 456899999999988655432 34588988776
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.92 E-value=5.5e-24 Score=197.04 Aligned_cols=227 Identities=15% Similarity=0.128 Sum_probs=163.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+ .... ..+.. ..++.++.+|++|+++++++++.+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~----~l~~-~~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLE----AARA-TAAEI-GPAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHH----HHHH-HHHHH-CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHH-HHHHh-CCceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999432 1111 11112 357889999999999999988775
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||..... .+.++++..+++|+.|+..+.+++. +.+...+||++||.+.+-
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------------ 144 (256)
T d1k2wa_ 77 WGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR------------ 144 (256)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------
T ss_pred hCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc------------
Confidence 789999999975432 2345567899999999888877642 233234999999976532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHH-----------HHHHHHHcCCCCceee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYF-----------FFTRDILNRKSIPIFE 309 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~-----------~~~~~~~~g~~~~~~~ 309 (439)
.......|+.+|.+.+.+++.++.++ ||++++|.||.|-.|... .... .....+....+..
T Consensus 145 ~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Plg--- 219 (256)
T d1k2wa_ 145 GEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWD--GVDAKFADYENLPRGEKKRQVGAAVPFG--- 219 (256)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHH--HHHHHHHHHHTCCTTHHHHHHHHHSTTS---
T ss_pred ccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhh--hhhhhhhhhccCChHHHHHHHHhcCCCC---
Confidence 11345789999999999999999884 899999999999876321 0000 1111111121221
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
-+...+|+|.+++.++...... ..|+++.+.+|..+|
T Consensus 220 ---------R~~~p~evA~~v~fL~S~~a~~----------iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 220 ---------RMGRAEDLTGMAIFLATPEADY----------IVAQTYNVDGGNWMS 256 (256)
T ss_dssp ---------SCBCHHHHHHHHHHTTSGGGTT----------CCSCEEEESTTSSCC
T ss_pred ---------CCcCHHHHHHHHHHHhCchhCC----------ccCceEEECcchhhC
Confidence 2466899999999887544422 345899998876543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.92 E-value=1.9e-23 Score=192.73 Aligned_cols=223 Identities=15% Similarity=0.084 Sum_probs=160.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++||++|||||+++||++++++|+++|++|++.+|+.+ ......+.. ...+.++++|++|+++++++++.+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~-----~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE-----EGAATAREL-GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTT-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH-----HHHHHHHHh-CCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999332 111111111 346889999999999999988765
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||..... ...++++..+++|+.++.++.+++. +.+ ..+||++||...+.
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~isS~~~~~------------ 143 (254)
T d1hdca_ 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSAAGLM------------ 143 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS------------
T ss_pred cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeecccccchhcc------------
Confidence 789999999985432 2345566899999999888877763 444 23999999976532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..+ +............. ......-+
T Consensus 144 ~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~----------~~~~~~~~~~~~~~----~~~pl~R~ 209 (254)
T d1hdca_ 144 GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP----------MTAETGIRQGEGNY----PNTPMGRV 209 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH----------HHHHHTCCCSTTSC----TTSTTSSC
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCc----------cchhcCHHHHHHHH----hCCCCCCC
Confidence 11345789999999999999999884 899999999999754 11111111111111 00001112
Q ss_pred -eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 -TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 -i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+..+|+|.+++.++...... ..|+++.+.+|-
T Consensus 210 g~~PedvA~~v~fL~S~~a~~----------itG~~i~vDGG~ 242 (254)
T d1hdca_ 210 GNEPGEIAGAVVKLLSDTSSY----------VTGAELAVDGGW 242 (254)
T ss_dssp B-CHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred CCCHHHHHHHHHHHhchhhCC----------CCCceEEeCCCc
Confidence 34799999999998654432 345899998864
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.4e-23 Score=193.21 Aligned_cols=223 Identities=15% Similarity=0.078 Sum_probs=161.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
.+||++|||||+++||+++++.|+++|++|++.+|+.+ ..........++.++.+|++|.++++++++.+
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~-------~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES-------GGRALEQELPGAVFILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH-------HHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH-------HHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999321 11111112357899999999999999988775
Q ss_pred --CccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|++|||||..... .+.++++..+++|+.|+.++.+++. +.+ .+||++||...+-
T Consensus 77 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--G~Ii~isS~~~~~----------- 143 (250)
T d1ydea1 77 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ--GNVINISSLVGAI----------- 143 (250)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCHHHHH-----------
T ss_pred cCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC--CCCcccccccccc-----------
Confidence 789999999964321 2344567899999999887777663 433 3999999966532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCC----CCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGR----PDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..|... ................+...
T Consensus 144 -~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R-------- 214 (250)
T d1ydea1 144 -GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGR-------- 214 (250)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSS--------
T ss_pred -cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCCCC--------
Confidence 11345789999999999999999984 899999999999654110 00001122222333333222
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+...+|+|.+++.++..... ..|+++.+.+|-.
T Consensus 215 ----~g~p~eva~~v~fL~Sda~~-----------itG~~i~vDGG~~ 247 (250)
T d1ydea1 215 ----MGQPAEVGAAAVFLASEANF-----------CTGIELLVTGGAE 247 (250)
T ss_dssp ----CBCHHHHHHHHHHHHHHCTT-----------CCSCEEEESTTTT
T ss_pred ----CCCHHHHHHHHHHHhCccCC-----------CcCCeEEECCCcc
Confidence 56689999999998753222 3458999887754
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.91 E-value=5.8e-24 Score=196.26 Aligned_cols=226 Identities=17% Similarity=0.123 Sum_probs=161.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+ .......+.....++.++.+|++|+++++++++.+
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD----VGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999432 11222222223457899999999999999888775
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||..... .+.++++..+++|+.|+..+.+++. +.+...+||++||...+-
T Consensus 80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~------------ 147 (251)
T d1zk4a1 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV------------ 147 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS------------
T ss_pred hCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec------------
Confidence 689999999985432 2345566899999999888888764 333223899999976431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhH-----hCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHI-----YGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~-----~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
.......|+.+|.+.+.+++.++.+ +||++++|.||.|..+...... -..... .....+++ .
T Consensus 148 ~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~-~~~~~~--~~~~~~pl----------~ 214 (251)
T d1zk4a1 148 GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLP-GAEEAM--SQRTKTPM----------G 214 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTST-THHHHH--TSTTTCTT----------S
T ss_pred cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcC-CHHHHH--HHHhCCCC----------C
Confidence 1133578999999999999988765 3799999999999765211000 001111 11111222 1
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
-+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 215 R~~~pedvA~~v~fL~S~~s~~----------itG~~i~vDGG 247 (251)
T d1zk4a1 215 HIGEPNDIAYICVYLASNESKF----------ATGSEFVVDGG 247 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCchhCC----------CcCcEEEECcc
Confidence 2567899999999988654432 34589988776
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.91 E-value=3e-24 Score=199.41 Aligned_cols=233 Identities=12% Similarity=0.100 Sum_probs=159.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
++||++|||||+++||++++++|+++|++|++.+|+.. ........+. ....++.++.+|++|.++++++++.+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~---~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA---AEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH---HHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 67999999999999999999999999999999998432 1111111111 12357889999999999999998775
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|++|||||..... .+.++++..+++|+.|+.++.+++ ++.+. .+||++||...+.
T Consensus 79 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Iv~isS~~~~~---------- 147 (260)
T d1x1ta1 79 RQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGF-GRIINIASAHGLV---------- 147 (260)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS----------
T ss_pred HHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCC-ceEeeccccccee----------
Confidence 789999999985432 234556789999999977776665 44443 3999999976532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCc----eeecCCCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIP----IFESPDHG 314 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~ 314 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|-.|.... ............ ........
T Consensus 148 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T d1x1ta1 148 --ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEK------QISALAEKNGVDQETAARELLSEK 219 (260)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------------CHHHH
T ss_pred --ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhh------hhhhhhhhcCCChHHHHHHHHHhc
Confidence 11345789999999999999999984 8999999999997663210 000000000000 00000000
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
....-+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 220 ~Pl~R~g~pediA~~v~fL~S~~a~~----------itG~~i~vDGG 256 (260)
T d1x1ta1 220 QPSLQFVTPEQLGGTAVFLASDAAAQ----------ITGTTVSVDGG 256 (260)
T ss_dssp CTTCCCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred CCCCCCcCHHHHHHHHHHHhChhhCC----------CcCCEEEECcc
Confidence 01123567899999999998654432 34589998776
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.91 E-value=3.2e-23 Score=192.28 Aligned_cols=227 Identities=16% Similarity=0.124 Sum_probs=162.7
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.++||++|||||+++||+++++.|+++|++|++.+|+.+. ......+.. ...++.++.+|++|+++++++++.+
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREA----LEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVV 77 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999994321 111111111 2346889999999999999888775
Q ss_pred ----CccEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|++|||||.... ..+.++++..+++|+.++..+.+++. +.+ ..+||++||...+.
T Consensus 78 ~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~~~--------- 147 (260)
T d1zema1 78 RDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTASMAGVK--------- 147 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHS---------
T ss_pred HHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhc-CCCCCeeechhhcc---------
Confidence 78999999997532 12345567899999999888877763 333 23999999966532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCC-------------C-CCChHHHHHHHHHcCC
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWG-------------R-PDMAYFFFTRDILNRK 303 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~-------------~-~~~~~~~~~~~~~~g~ 303 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..+.. . .......+...+....
T Consensus 148 ---~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T d1zema1 148 ---GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSV 224 (260)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTS
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcC
Confidence 11235789999999999999999885 89999999999976521 0 0011112233333333
Q ss_pred CCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 304 SIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 304 ~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+... +...+|+|.+++.++...... ..|+++.+.+|
T Consensus 225 Pl~R------------~g~pedvA~~v~fL~S~~s~~----------itG~~i~VDGG 260 (260)
T d1zema1 225 PMRR------------YGDINEIPGVVAFLLGDDSSF----------MTGVNLPIAGG 260 (260)
T ss_dssp TTSS------------CBCGGGSHHHHHHHHSGGGTT----------CCSCEEEESCC
T ss_pred CCCC------------CcCHHHHHHHHHHHhCchhcC----------ccCCeEEeCCC
Confidence 3322 456799999999998754432 34588887654
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=1.1e-23 Score=195.92 Aligned_cols=231 Identities=13% Similarity=0.098 Sum_probs=154.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+++|++|||||+++||++++++|+++|++|++.+|+.+..+....+.........++.++.+|++|.++++++++.+
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999443211111111111112346899999999999999988765
Q ss_pred --CccEEEEcccccCcc--------ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCC-cccCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR--------YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSS-SVYGLNTKVPF 238 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~--------~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~-~v~g~~~~~~~ 238 (439)
++|++|||||..... .+.++++..+++|+.++.++.+++. +.+. .+|+++|. +.+.
T Consensus 83 ~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g--~iI~~~S~~~~~~------- 153 (264)
T d1spxa_ 83 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKG--EIVNISSIASGLH------- 153 (264)
T ss_dssp HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEECCTTSSSS-------
T ss_pred hCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccC--cceeeeeeccccc-------
Confidence 789999999974321 1334567899999999877777664 3332 56665554 3221
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC-------ChHHHHHHHHHcCCCCcee
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD-------MAYFFFTRDILNRKSIPIF 308 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~-------~~~~~~~~~~~~g~~~~~~ 308 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|-.+..... .........+.+..+...
T Consensus 154 -----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R- 227 (264)
T d1spxa_ 154 -----ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGV- 227 (264)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSS-
T ss_pred -----cCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCCCC-
Confidence 11234679999999999999999884 89999999999976632210 001111222222222222
Q ss_pred ecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 309 ESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 309 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+...+|+|.+++.++..+... -..|+++.+.+|.
T Consensus 228 -----------~g~pedvA~~v~fL~S~~~s~---------~itG~~i~vDGG~ 261 (264)
T d1spxa_ 228 -----------MGQPQDIAEVIAFLADRKTSS---------YIIGHQLVVDGGS 261 (264)
T ss_dssp -----------CBCHHHHHHHHHHHHCHHHHT---------TCCSCEEEESTTG
T ss_pred -----------CcCHHHHHHHHHHHhCCcccC---------CccCceEEeCCCh
Confidence 456799999999998644221 1234899987764
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.91 E-value=2.8e-23 Score=192.47 Aligned_cols=225 Identities=15% Similarity=0.103 Sum_probs=163.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
+||.+|||||+++||++++++|+++|++|++.+|+.+. ..+...+.. ...++.++++|++|+++++++++.+
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~----l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEG----LRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVER 76 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999994321 111111111 2346889999999999999888765
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh------cCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN------ANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~------~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|++|||||..... .+.++++..+++|+.|+.++.+++.+ .+ ..+||++||...+.
T Consensus 77 ~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~-~g~Ii~i~S~~~~~---------- 145 (257)
T d2rhca1 77 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG-TGRIVNIASTGGKQ---------- 145 (257)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHT-EEEEEEECCGGGTS----------
T ss_pred hCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcC-Cccccccccccccc----------
Confidence 689999999975432 23456678999999999999988753 23 23899999976532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCC---------CCChHHHHHHHHHcCCCCceee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGR---------PDMAYFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~---------~~~~~~~~~~~~~~g~~~~~~~ 309 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|-.|... ...........+.+..+...
T Consensus 146 --~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~PlgR-- 221 (257)
T d2rhca1 146 --GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGR-- 221 (257)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTSS--
T ss_pred --ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCCC--
Confidence 11345789999999999999999985 799999999999654210 00111223333344333322
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 222 ----------~~~pedia~~v~fL~S~~s~~----------itG~~i~vDGG 253 (257)
T d2rhca1 222 ----------YVQPSEVAEMVAYLIGPGAAA----------VTAQALNVCGG 253 (257)
T ss_dssp ----------CBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTT
T ss_pred ----------CcCHHHHHHHHHHHhCchhcC----------CcCceEEECcC
Confidence 466899999999998654432 34589988775
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.91 E-value=3e-23 Score=193.49 Aligned_cols=230 Identities=14% Similarity=0.125 Sum_probs=163.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++||++|||||+++||++++++|+++|++|++.+|+.+ ...+...+......+.++.+|++|+++++++++.+
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD----HGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999432 12222223333456888999999999999988765
Q ss_pred --CccEEEEcccccCcc------ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR------YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~------~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|++|||||..... .+.++++..+++|+.|+..+.+++. +.+ ..++|++||...+-.
T Consensus 80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss~~~~~~--------- 149 (268)
T d2bgka1 80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSFTA--------- 149 (268)
T ss_dssp HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGTCC---------
T ss_pred cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCcccccccccccc---------
Confidence 789999999975432 1234567899999999888777663 334 239999998654321
Q ss_pred CCCCCCC-ChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC-hHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 242 DRTDQPA-SLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM-AYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 242 ~~~~~p~-~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
. .+. ..|+.+|.+.+.+++.++.++ |+++++|.||.|..|...... .-.............+.
T Consensus 150 --~-~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~--------- 217 (268)
T d2bgka1 150 --G-EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLK--------- 217 (268)
T ss_dssp --C-TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSC---------
T ss_pred --c-cccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccccC---------
Confidence 1 222 379999999999999999884 899999999999887432110 11111222111111111
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.-+...+|+|.+++.++...... ..|+++.+.+|-.
T Consensus 218 -gr~~~pedvA~~v~fL~S~~s~~----------itGq~i~VDGG~t 253 (268)
T d2bgka1 218 -GTLLRAEDVADAVAYLAGDESKY----------VSGLNLVIDGGYT 253 (268)
T ss_dssp -SCCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred -CCCcCHHHHHHHHHHHhChhhCC----------ccCceEEECcCcc
Confidence 11456899999999998654432 3458999988753
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.91 E-value=3.4e-23 Score=191.96 Aligned_cols=227 Identities=13% Similarity=0.100 Sum_probs=162.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+. ..+...+.. ....+.++.+|++|+++++++++.+
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKE----LNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN 81 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999994321 111112211 2346788999999999988877643
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|++|||||..... .+.++++..+++|+.++.++.+++. +.+ ..+||++||.....
T Consensus 82 ~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~---------- 150 (259)
T d2ae2a_ 82 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE-RGNVVFISSVSGAL---------- 150 (259)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS-SEEEEEECCGGGTS----------
T ss_pred HhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhc-cccccccccccccc----------
Confidence 589999999975432 2345667899999999888777664 333 34999999976532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCC---CCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGR---PDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..+... .+.........+....+...
T Consensus 151 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~R-------- 220 (259)
T d2ae2a_ 151 --AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRR-------- 220 (259)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCS--------
T ss_pred --ccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCCC--------
Confidence 11345789999999999999999884 899999999999765211 01111123333343333322
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 221 ----~g~pedvA~~v~fL~S~~s~~----------itG~~i~VDGG~ 253 (259)
T d2ae2a_ 221 ----MGEPKELAAMVAFLCFPAASY----------VTGQIIYVDGGL 253 (259)
T ss_dssp ----CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred ----CcCHHHHHHHHHHHhCchhCC----------CcCcEEEECCCe
Confidence 456799999999988654432 345889887764
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=1.9e-23 Score=193.62 Aligned_cols=227 Identities=14% Similarity=0.100 Sum_probs=150.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+++|++|||||+++||.++++.|+++|++|++.+|+.+. ..+...+. ....++.++.+|++|+++++++++.+
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~----l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYE----LNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999994321 11111111 12347899999999999988877653
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|++|||||..... .+.++++..+++|+.|+..+.+++. +.+. .+||++||....-
T Consensus 82 ~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Iv~isS~~~~~---------- 150 (259)
T d1xq1a_ 82 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGC-GNIIFMSSIAGVV---------- 150 (259)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CEEEEEC----------------
T ss_pred HhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccc-ccccccccccccc----------
Confidence 589999999975432 2345667899999999888877663 4443 3999999966431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCccee
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR 318 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..|..... ........+.... ...
T Consensus 151 --~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~-~~~~~~~~~~~~~------------pl~ 215 (259)
T d1xq1a_ 151 --SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV-YDDEFKKVVISRK------------PLG 215 (259)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------------
T ss_pred --cccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhh-chHHHHHHHHhCC------------CCC
Confidence 11345789999999999999999884 89999999999977632200 0001111111111 112
Q ss_pred eeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 319 DFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 319 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
-+...+|+|.+++.++...... ..|+++.+.+|-.
T Consensus 216 R~~~pedvA~~v~fL~S~~s~~----------iTG~~i~vDGG~s 250 (259)
T d1xq1a_ 216 RFGEPEEVSSLVAFLCMPAASY----------ITGQTICVDGGLT 250 (259)
T ss_dssp --CCGGGGHHHHHHHTSGGGTT----------CCSCEEECCCCEE
T ss_pred CCcCHHHHHHHHHHHhCchhcC----------CcCcEEEeCCCEE
Confidence 2567899999999888644432 3448888877643
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=8.1e-24 Score=193.07 Aligned_cols=230 Identities=20% Similarity=0.168 Sum_probs=161.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCe--EEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDG--VLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
++++|||||||||||+++++.|+++|++ |+.+.|+. .... ....+++++.+|++|.+.+.++++++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~---------~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~-- 69 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA---------QGKE-KIGGEADVFIGDITDADSINPAFQGI-- 69 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCH---------HHHH-HTTCCTTEEECCTTSHHHHHHHHTTC--
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCH---------HHHH-hccCCcEEEEeeeccccccccccccc--
Confidence 4679999999999999999999999976 55566611 1111 22358899999999999999999988
Q ss_pred cEEEEcccccCcccc-------------ccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVRYA-------------MQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~-------------~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
|.|||+|+....... .........+|+.|+.++++.+...... .+.+.|+...+.....
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~------- 141 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVGSMGGTNPDHP------- 141 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEEETTTTCTTCG-------
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccccc-ccccccccccCCCCcc-------
Confidence 999999986443211 2334567889999999999999888855 8888888766432110
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
........|...+.+.+.+ ..+.|++++++||+++|||....... +.+..... .....+|+|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ilRp~~v~g~~~~~~~~--------~~~~~~~~------~~~~~~~i~ 203 (252)
T d2q46a1 142 LNKLGNGNILVWKRKAEQY----LADSGTPYTIIRAGGLLDKEGGVREL--------LVGKDDEL------LQTDTKTVP 203 (252)
T ss_dssp GGGGGGCCHHHHHHHHHHH----HHHSSSCEEEEEECEEECSCTTSSCE--------EEESTTGG------GGSSCCEEE
T ss_pred cccccccchhhhhhhhhhh----hhcccccceeecceEEECCCcchhhh--------hhccCccc------ccCCCCeEE
Confidence 0112234566666555544 34469999999999999997542111 11111111 233457999
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC---cccHHHHHHHHHHHh
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS---PVPVSDLVSILERLL 377 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~t~~el~~~l~~~~ 377 (439)
++|+|++++.+++++.. .+++|||+++. ..++.|+.+++.+..
T Consensus 204 ~~Dva~a~~~~l~~~~~------------~g~~~~i~~~~~~~~~~~~~~~~lf~~i~ 249 (252)
T d2q46a1 204 RADVAEVCIQALLFEEA------------KNKAFDLGSKPEGTSTPTKDFKALFSQVT 249 (252)
T ss_dssp HHHHHHHHHHHTTCGGG------------TTEEEEEEECCTTTSCCCCCHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccc------------cCcEEEEeeCCCCCChhHHHHHHHHHHHH
Confidence 99999999999987663 33899998743 456777776665443
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.91 E-value=1.6e-22 Score=187.01 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=159.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
|.+|||||+++||++++++|+++|++|++.+|+.+. ......+.. ...++.++++|++|+++++++++.+
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDAT----AKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLG 77 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 567999999999999999999999999999994321 111111111 2347889999999999999888765
Q ss_pred CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|++|||||..... .+.++++..+++|+.|+.++.+++ ++.+...+||++||...+. ..
T Consensus 78 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~~ 145 (255)
T d1gega_ 78 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV------------GN 145 (255)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------CC
T ss_pred CccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc------------cC
Confidence 789999999975432 234556789999999988887765 3444334899999976532 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC---------CChHHHHHHHHHcCCCCceeecCCC
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP---------DMAYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
.....|+.+|.+.+.+++.++.++ |+++++|.||.|-.|.... ..........+.+..+..
T Consensus 146 ~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~------- 218 (255)
T d1gega_ 146 PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLG------- 218 (255)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTC-------
T ss_pred cccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCCC-------
Confidence 345789999999999999999884 8999999999986541100 000001112222222222
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
-+...+|+|.+++.++...... ..|+++.+.+|-.
T Consensus 219 -----R~~~peevA~~v~fL~S~~a~~----------itG~~i~vDGG~~ 253 (255)
T d1gega_ 219 -----RLSEPEDVAACVSYLASPDSDY----------MTGQSLLIDGGMV 253 (255)
T ss_dssp -----SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSSSS
T ss_pred -----CCcCHHHHHHHHHHHhCchhCC----------ccCcEEEecCCEE
Confidence 2566899999999988654432 3458999887643
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.90 E-value=3.9e-23 Score=190.79 Aligned_cols=227 Identities=16% Similarity=0.068 Sum_probs=159.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+ ...+ ..+.. .....++++|++|.++++++++.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~----~~~~-~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA----AGQQ-LAAEL-GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH----HHHH-HHHHH-CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHH-HHHHh-CCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998331 1111 11222 356888999999999999888776
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNAN--PQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~--~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|++|||||..... .+.++++..+++|+.++..+.+++.+.- ...+||++||...+- ..
T Consensus 78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~------------~~ 145 (253)
T d1hxha_ 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL------------PI 145 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS------------CC
T ss_pred hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc------------Cc
Confidence 689999999975432 2345567899999999888777764321 113999999976532 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh-----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCc-eeecCCCCcceee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY-----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIP-IFESPDHGTVARD 319 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~-----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~ 319 (439)
.....|+.+|.+.+.+++.++.++ +|++++|.||.|..+. ........... ...........-.
T Consensus 146 ~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~----------~~~~~~~~~~~~~~~~~~~~~~~gr 215 (253)
T d1hxha_ 146 EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPM----------MQASLPKGVSKEMVLHDPKLNRAGR 215 (253)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHH----------HHHHSCTTCCHHHHBCBTTTBTTCC
T ss_pred cccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHh----------HHhhCcchhhHHHHHhCccccccCC
Confidence 345789999999999999988764 4999999999997641 11111111000 0000000001113
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|+|.+++.++...... ..|+++++.+|
T Consensus 216 ~~~pedvA~~v~fL~S~~s~~----------itG~~i~VDGG 247 (253)
T d1hxha_ 216 AYMPERIAQLVLFLASDESSV----------MSGSELHADNS 247 (253)
T ss_dssp EECHHHHHHHHHHHHSGGGTT----------CCSCEEEESSS
T ss_pred CCCHHHHHHHHHHHhChhhCC----------CcCcEEEECcc
Confidence 677899999999988654432 34588988765
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.4e-23 Score=198.18 Aligned_cols=232 Identities=10% Similarity=0.097 Sum_probs=162.3
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.++||++|||||+++||++++++|+++|++|++.+|+.+..+....+...... ...++.++.+|++|+++++++++.+
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 37999999999999999999999999999999999944321111111111111 1347889999999999999888765
Q ss_pred -----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKN----ANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|++|||||..... .+.++++..+++|+.|+..+.+++.+ .+. .+||++||....+
T Consensus 89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~Ii~~ss~~~~~--------- 158 (297)
T d1yxma1 89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIVPTKAG--------- 158 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECCCCTTC---------
T ss_pred HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc-ccccccccccccc---------
Confidence 789999999974432 23456678999999998888887643 332 2788887754322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC--hHHHHHHHHHcCCCCceeecCCCCc
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM--AYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
......|+.+|.+.+.+++.++.++ ||++++|.||.|..+...... ....+.....+..+.
T Consensus 159 ----~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~pl---------- 224 (297)
T d1yxma1 159 ----FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPA---------- 224 (297)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTT----------
T ss_pred ----ccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCC----------
Confidence 1345789999999999999999885 899999999999876321110 000111111111111
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.-+...+|+|.+++.++...... ..|+++.+.+|..
T Consensus 225 --gR~g~pedvA~~v~fL~Sd~s~~----------iTG~~i~VDGG~s 260 (297)
T d1yxma1 225 --KRIGVPEEVSSVVCFLLSPAASF----------ITGQSVDVDGGRS 260 (297)
T ss_dssp --SSCBCTHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred --CCCcCHHHHHHHHHHHhCchhcC----------cCCcEEEeCcChh
Confidence 12556799999999998655432 3458999987753
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.90 E-value=1.7e-23 Score=195.70 Aligned_cols=234 Identities=12% Similarity=0.076 Sum_probs=160.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+..+....+.........++.++.+|++|+++++++++.+
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999432111111111111112246899999999999999888765
Q ss_pred --CccEEEEcccccCcc------ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR------YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~------~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
++|++|||||..... .+.++++..+++|+.++..+.+++. +.+ ..+|+++||.+...
T Consensus 82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~ii~~ss~~~~~---------- 150 (274)
T d1xhla_ 82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQ---------- 150 (274)
T ss_dssp HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSS----------
T ss_pred cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccc-cccccchhhhhccc----------
Confidence 689999999964322 1234567899999999888777764 333 33888888755321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCC---CCChHHHHHHHHH--cCCCCceeecCCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGR---PDMAYFFFTRDIL--NRKSIPIFESPDH 313 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~---~~~~~~~~~~~~~--~g~~~~~~~~~~~ 313 (439)
.......|+.+|.+.+.+++.++.++ ||++++|.||.|..|... .......-....+ ....+|+
T Consensus 151 --~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPl------ 222 (274)
T d1xhla_ 151 --AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPV------ 222 (274)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT------
T ss_pred --cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCC------
Confidence 11235689999999999999999884 899999999999766211 0001111111111 1222232
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhc-hhccCCCCCccCCCCCcEEEecCCCc
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTA-EKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.-+...+|+|.+++.++..+ ... ..|+++.+.+|..
T Consensus 223 ----gR~g~pediA~~v~fL~S~d~s~~----------itG~~i~vDGG~~ 259 (274)
T d1xhla_ 223 ----GHCGKPEEIANIIVFLADRNLSSY----------IIGQSIVADGGST 259 (274)
T ss_dssp ----SSCBCHHHHHHHHHHHHCHHHHTT----------CCSCEEEESTTGG
T ss_pred ----CCCcCHHHHHHHHHHHcCCccccC----------ccCcEEEeCcCHH
Confidence 11456899999999988532 321 3348999988753
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=7.7e-23 Score=189.45 Aligned_cols=230 Identities=15% Similarity=0.053 Sum_probs=161.2
Q ss_pred cCCCCEEEEECCCC--hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAG--FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.++||++|||||+| +||++++++|+++|++|++.+|+.. ................++++|++|.++++++++.+
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER----LRPEAEKLAEALGGALLFRADVTQDEELDALFAGV 80 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH----HHHHHHHhhhccCcccccccccCCHHHHHHHHHHH
Confidence 37899999999998 8999999999999999999888432 11222222223456788999999999999888764
Q ss_pred -----CccEEEEcccccCcc--------ccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR--------YAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~--------~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|++|||||..... ...+++...+++|+.++..+.+++..... ..+||++||.....
T Consensus 81 ~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~-------- 152 (256)
T d1ulua_ 81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK-------- 152 (256)
T ss_dssp HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS--------
T ss_pred HHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC--------
Confidence 689999999974321 12234557899999999999888754321 13899999976532
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..+..........+...+.+..+...
T Consensus 153 ----~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~R--------- 219 (256)
T d1ulua_ 153 ----VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRR--------- 219 (256)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHSTTSS---------
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCCCC---------
Confidence 11345789999999999999999984 89999999999987644322112233343443333322
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+...+|+|.+++.++...... ..|+++.+.+|..
T Consensus 220 ---~~~pedvA~~v~fL~S~~s~~----------itG~~i~VDGG~~ 253 (256)
T d1ulua_ 220 ---NITQEEVGNLGLFLLSPLASG----------ITGEVVYVDAGYH 253 (256)
T ss_dssp ---CCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred ---CcCHHHHHHHHHHHhCchhCC----------ccCCeEEECcCEe
Confidence 455799999999998755432 3458999887643
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.90 E-value=1.5e-23 Score=195.80 Aligned_cols=231 Identities=16% Similarity=0.132 Sum_probs=157.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh----hcCCeEEEEcccCCHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL----ERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+. ..+...+.. ....+.++.+|++|+++++++++.
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~----l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 78 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSER----LEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINS 78 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHH
Confidence 789999999999999999999999999999999994321 111122221 224689999999999999988876
Q ss_pred c-----CccEEEEcccccCccc--------cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecC-CcccCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVRY--------AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASS-SSVYGLNT 234 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~~--------~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS-~~v~g~~~ 234 (439)
+ ++|++|||||...... ..++++..+++|+.++..+.+++. +.+ . .+|+++| .+...
T Consensus 79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g-~iI~~~Ss~a~~~--- 153 (272)
T d1xkqa_ 79 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-G-EIVNVSSIVAGPQ--- 153 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C-EEEEECCGGGSSS---
T ss_pred HHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC-C-ccccccchhcccc---
Confidence 5 7899999999754321 122356789999999888877764 333 2 5555554 44221
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCC----CCChHHHHHHHHH-cCCCCc
Q 013602 235 KVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGR----PDMAYFFFTRDIL-NRKSIP 306 (439)
Q Consensus 235 ~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~----~~~~~~~~~~~~~-~g~~~~ 306 (439)
.......|+.+|.+.+.+++.++.++ ||++++|.||.|-.+... ++.....+..... ....++
T Consensus 154 ---------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~P 224 (272)
T d1xkqa_ 154 ---------AQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIP 224 (272)
T ss_dssp ---------CCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCT
T ss_pred ---------CCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCC
Confidence 11235789999999999999999884 899999999999765211 1111111111111 122233
Q ss_pred eeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcc
Q 013602 307 IFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPV 364 (439)
Q Consensus 307 ~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (439)
+ .-+...+|+|.+++.++...... ...|+++.+.+|..+
T Consensus 225 l----------gR~g~pediA~~v~fL~S~~as~---------~iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 225 I----------GAAGKPEHIANIILFLADRNLSF---------YILGQSIVADGGTSL 263 (272)
T ss_dssp T----------SSCBCHHHHHHHHHHHHCHHHHT---------TCCSCEEEESTTGGG
T ss_pred C----------CCCcCHHHHHHHHHHHhCcchhC---------CccCeEEEeCcCHHH
Confidence 2 11566899999999998543211 023489999887543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.90 E-value=9.3e-23 Score=186.91 Aligned_cols=224 Identities=17% Similarity=0.149 Sum_probs=163.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++||++|||||+++||++++++|+++|++|++.+|+.+ .. ....+. -..++.++++|++|+++++++++.+
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~----~~-~~~~~~-~~~~~~~~~~Dls~~~~i~~~~~~i~~~ 76 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER----LL-AEAVAA-LEAEAIAVVADVSDPKAVEAVFAEALEE 76 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HH-HHHHHT-CCSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HH-HHHHHH-cCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999332 11 111111 2357889999999999999988876
Q ss_pred --CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCCcccCCCCCCCCCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANPQP-AIVWASSSSVYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~-~~V~~SS~~v~g~~~~~~~~e~~~~~~ 246 (439)
++|++|||||..... .+.+++...+++|+.++.++.+++.+..... .++++||.+... ..
T Consensus 77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~-------------~~ 143 (241)
T d2a4ka1 77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-------------AF 143 (241)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-------------HH
T ss_pred hCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccc-------------cc
Confidence 689999999975432 2344566899999999999999886554333 555555544321 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeH
Q 013602 247 PASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYI 323 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v 323 (439)
....|+.+|.+.|.+++.+++++ |+++++|.||.|-.+... .........+.+..+... +...
T Consensus 144 ~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~--~~~~~~~~~~~~~~p~~r------------~~~p 209 (241)
T d2a4ka1 144 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA--GLPPWAWEQEVGASPLGR------------AGRP 209 (241)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGT--TSCHHHHHHHHHTSTTCS------------CBCH
T ss_pred CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHH--hhhHhHHHHHHhCCCCCC------------CcCH
Confidence 34689999999999999999985 799999999999765322 112233444444444333 4568
Q ss_pred HHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 324 DDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 324 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+|+|.+++.++...... ..|+++.+.+|..
T Consensus 210 ~dva~~v~fL~S~~s~~----------itG~~i~vDGG~s 239 (241)
T d2a4ka1 210 EEVAQAALFLLSEESAY----------ITGQALYVDGGRS 239 (241)
T ss_dssp HHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred HHHHHHHHHHhcchhCC----------CcCceEEeCCCcc
Confidence 99999999998655432 3458898887753
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.4e-23 Score=194.02 Aligned_cols=226 Identities=18% Similarity=0.146 Sum_probs=157.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh---hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+||++|||||+++||++++++|+++|++|++.+|+.+. ..+...+.. ...++.++.+|++|.++++++++.+
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEA----GVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV 77 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999994321 111111211 2347889999999999999888765
Q ss_pred ----CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHH----hcC--CCCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCK----NAN--PQPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~--~~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||... .++++..+++|+.++.++.+++. +.+ ...+||++||.+.+-
T Consensus 78 ~~~G~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~------------ 141 (254)
T d2gdza1 78 DHFGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM------------ 141 (254)
T ss_dssp HHHSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS------------
T ss_pred HHcCCcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc------------
Confidence 6899999999743 36788999999999777766653 322 123799999976532
Q ss_pred CCCCCChHHHHHHHHHHHHHH--HHhH---hCCcEEEEeeccccCCCCCCCC------hHHHHHHHHHcCCCCceeecCC
Q 013602 244 TDQPASLYAATKKAGEEIAHT--YNHI---YGLSLTGLRFFTVYGPWGRPDM------AYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~--~~~~---~gi~~~ilrpg~v~G~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
+......|+.+|.+.+.+++. ++.+ +|+++++|.||.|-.+-..... ........+... ++
T Consensus 142 ~~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~--~p------ 213 (254)
T d2gdza1 142 PVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDM--IK------ 213 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHH--HH------
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhc--CC------
Confidence 113456899999999999885 4544 4899999999998654110000 000000000000 01
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCcccHH
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVS 367 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~ 367 (439)
..-+...+|+|.+++.++.... ..|+++.+.+|..+.+.
T Consensus 214 ----~~r~~~pedvA~~v~fL~s~~~------------itG~~i~VdGG~~~~~~ 252 (254)
T d2gdza1 214 ----YYGILDPPLIANGLITLIEDDA------------LNGAIMKITTSKGIHFQ 252 (254)
T ss_dssp ----HHCCBCHHHHHHHHHHHHHCTT------------CSSCEEEEETTTEEEEC
T ss_pred ----CCCCcCHHHHHHHHHHHHcCCC------------CCCCEEEECCCCeeecc
Confidence 1124567999999999987543 23489999888765543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.90 E-value=8.8e-23 Score=189.31 Aligned_cols=230 Identities=18% Similarity=0.141 Sum_probs=162.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
+++||+||||||+++||++++++|+++|++|++.++.... .......+.. ...++.++.+|++|.++++++++..
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~---~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSK---AAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChH---HHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHH
Confidence 4899999999999999999999999999999998773321 1111111211 2347889999999999999888765
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecC-CcccCCCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASS-SSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS-~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||..... .+.++++..+++|+.+..++++++.++-. ..++++++| .+.+.
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~------------ 147 (259)
T d1ja9a_ 80 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT------------ 147 (259)
T ss_dssp HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC------------
T ss_pred HHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccccc------------
Confidence 689999999985432 23455678999999999888888764321 125666655 33321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCC-----------CCCCChHHHHHHHHHcCCCCceee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPW-----------GRPDMAYFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~-----------~~~~~~~~~~~~~~~~g~~~~~~~ 309 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..+- .........+...+.+..+...
T Consensus 148 ~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R-- 225 (259)
T d1ja9a_ 148 GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKR-- 225 (259)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSS--
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCCC--
Confidence 11345789999999999999999984 8999999999986531 1111112233344444444333
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+...+|+|.+++.++...... ..|+++.+.+|.
T Consensus 226 ----------~g~p~eVa~~v~fL~S~~a~~----------itG~~i~vDGG~ 258 (259)
T d1ja9a_ 226 ----------IGYPADIGRAVSALCQEESEW----------INGQVIKLTGGG 258 (259)
T ss_dssp ----------CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred ----------CcCHHHHHHHHHHHhCchhcC----------CcCceEEeCCCC
Confidence 466899999999998766532 345888887763
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.90 E-value=2.3e-22 Score=185.70 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=133.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC-CHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN-DMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~~~~~~~~~-- 173 (439)
+++|+||||||+++||.+++++|+++|++|++++|..+.. .............++.++.+|++ +.++++++++.+
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH--HHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999998866531 11112223334457899999998 666677766654
Q ss_pred ---CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA------NPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~------~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
++|+||||||.. .+++++..+++|+.|+.++.+++.+. +...+||++||...+. +
T Consensus 81 ~~g~iDilvnnAG~~----~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~------------~ 144 (254)
T d1sbya1 81 QLKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------------A 144 (254)
T ss_dssp HHSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS------------C
T ss_pred HcCCCCEEEeCCCCC----CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc------------C
Confidence 689999999964 35788999999999988888876432 2234899999976542 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCC
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGP 284 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~ 284 (439)
......|+.+|.+...+++.++.++ |+++++|.||.|..+
T Consensus 145 ~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~ 187 (254)
T d1sbya1 145 IHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTP 187 (254)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCc
Confidence 1345789999999999999999884 899999999999865
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.90 E-value=4.8e-23 Score=189.12 Aligned_cols=224 Identities=13% Similarity=0.039 Sum_probs=158.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
+.||||||+++||++++++|+++|++|++.+++... .......+. ....++.++++|++|.++++++++.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~---~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 78 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAK---AAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 479999999999999999999999999998763321 111111111 12347889999999999999888765
Q ss_pred CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTD 245 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~ 245 (439)
++|++|||||..... .+.++++..+++|+.++.++.+++ ++.+. .+||++||...+- ..
T Consensus 79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~~~~~------------~~ 145 (244)
T d1edoa_ 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIASVVGLI------------GN 145 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHH------------CC
T ss_pred CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCC-cEEEEEcChhhcC------------CC
Confidence 789999999975432 345566789999999987777766 34443 3999999966431 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeee
Q 013602 246 QPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTY 322 (439)
Q Consensus 246 ~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (439)
.....|+.+|.+.+.+++.++.++ |+++++|.||.|-.+.... ....+...+....+... +..
T Consensus 146 ~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl~R------------~~~ 211 (244)
T d1edoa_ 146 IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK--LGEDMEKKILGTIPLGR------------TGQ 211 (244)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT--TCHHHHHHHHTSCTTCS------------CBC
T ss_pred CCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHH--hhHHHHHHHHhcCCCCC------------CcC
Confidence 345789999999999999999985 8999999999997652110 11223333444433322 456
Q ss_pred HHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 323 IDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 323 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
.+|+|.+++.+...+... -..|+++.+.+|-
T Consensus 212 p~dvA~~v~fLa~S~~a~---------~itG~~i~vdGG~ 242 (244)
T d1edoa_ 212 PENVAGLVEFLALSPAAS---------YITGQAFTIDGGI 242 (244)
T ss_dssp HHHHHHHHHHHHHCSGGG---------GCCSCEEEESTTT
T ss_pred HHHHHHHHHHHHCCchhc---------CCcCCeEEeCCCe
Confidence 899999999885333221 1344889887763
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.90 E-value=7.8e-23 Score=189.75 Aligned_cols=236 Identities=12% Similarity=0.073 Sum_probs=166.2
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
..+||++|||||+++||++++++|+++|++|++.+|+.+.......+... ....++.++.+|++|+++++++++.+
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~--~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGK--EFGVKTKAYQCDVSNTDIVTKTIQQIDA 83 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHH--HHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--HhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999976533222221111 12357889999999999999888765
Q ss_pred ---CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 013602 174 ---SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKD 242 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~ 242 (439)
++|++|||||..... .+.++++..+++|+.|+.++.+++. +.+..++++..||...+...... -
T Consensus 84 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~-----~ 158 (260)
T d1h5qa_ 84 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS-----L 158 (260)
T ss_dssp HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE-----T
T ss_pred HhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccc-----c
Confidence 689999999975432 2345667899999999877776653 33334477777776553211100 0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 243 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 243 ~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
........|+.+|.+.+.+++.++.++ |+++++|.||.|-.+.... ....+...+....+...
T Consensus 159 ~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl~R------------ 224 (260)
T d1h5qa_ 159 NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAH--MDKKIRDHQASNIPLNR------------ 224 (260)
T ss_dssp TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG--SCHHHHHHHHHTCTTSS------------
T ss_pred ccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhc--cCHHHHHHHHhcCCCCC------------
Confidence 011235689999999999999999874 8999999999997653221 11233344444443333
Q ss_pred eeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 320 FTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+...+|+|.+++.++...... ..|+++.+.+|.
T Consensus 225 ~g~pedvA~~v~fL~S~~s~~----------itG~~i~VDGG~ 257 (260)
T d1h5qa_ 225 FAQPEEMTGQAILLLSDHATY----------MTGGEYFIDGGQ 257 (260)
T ss_dssp CBCGGGGHHHHHHHHSGGGTT----------CCSCEEEECTTG
T ss_pred CcCHHHHHHHHHHHhcchhCC----------CcCceEEECCCe
Confidence 455799999999988654432 345899988764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.90 E-value=2.1e-22 Score=186.30 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=160.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
++||+||||||+++||++++++|+++|++|++.+|+... ..+..++. .....+.++.+|++|.++++++++.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~----l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKE----LDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999994321 11111111 12356778999999999988877543
Q ss_pred ----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEK 241 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~ 241 (439)
.+|+||||||..... .+.+++...+++|+.++..+.+++. +.+ ..++|++||......
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~-~g~ii~isS~~~~~~--------- 149 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSIAGFSA--------- 149 (258)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCGGGTSC---------
T ss_pred HhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccc-ccccccccccccccc---------
Confidence 479999999975432 2345667899999999888887664 333 339999999776321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC----ChHHHHHHHHHcCCCCceeecCCCC
Q 013602 242 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD----MAYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 242 ~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
......|+.+|.+.+.+++.+++++ ||++++|.||.|..+..... .........+....+...
T Consensus 150 ---~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plgR------- 219 (258)
T d1ae1a_ 150 ---LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGR------- 219 (258)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTCS-------
T ss_pred ---cccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCCCC-------
Confidence 1345789999999999999999985 89999999999987642211 001123333333322222
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+...+|+|.+++.++...... ..|+.+.+.+|-
T Consensus 220 -----~~~pediA~~v~fL~S~~s~~----------itG~~i~vDGG~ 252 (258)
T d1ae1a_ 220 -----AGKPQEVSALIAFLCFPAASY----------ITGQIIWADGGF 252 (258)
T ss_dssp -----CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred -----CcCHHHHHHHHHHHhChhhCC----------CcCcEEEeCCCe
Confidence 567899999999998654432 344888887764
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.90 E-value=3.6e-22 Score=193.32 Aligned_cols=241 Identities=15% Similarity=0.071 Sum_probs=171.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH-HHHHhhcccCcc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA-LLKKLFDVVSFT 176 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~-~~~~~~~~~~~d 176 (439)
+.|+|+|||||||||++++++|+++|++|+++.|+.++ .........++++++++|+.|.. .+..+++.+ |
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~------~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~--~ 73 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG------LIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGA--H 73 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS------HHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTC--S
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch------hhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCC--c
Confidence 45899999999999999999999999999999996542 11222334568999999999854 577788877 8
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~ 256 (439)
.++++..... ..|+.++.++++++++.+.. ++|+.||........ ..+...|..+|.
T Consensus 74 ~~~~~~~~~~------------~~~~~~~~~~~~aa~~agv~-~~v~~Ss~~~~~~~~----------~~~~~~~~~~k~ 130 (350)
T d1xgka_ 74 LAFINTTSQA------------GDEIAIGKDLADAAKRAGTI-QHYIYSSMPDHSLYG----------PWPAVPMWAPKF 130 (350)
T ss_dssp EEEECCCSTT------------SCHHHHHHHHHHHHHHHSCC-SEEEEEECCCGGGTS----------SCCCCTTTHHHH
T ss_pred eEEeeccccc------------chhhhhhhHHHHHHHHhCCC-ceEEEeeccccccCC----------cccchhhhhhHH
Confidence 7777653211 13666788999999999976 777788765433211 134456778898
Q ss_pred HHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeH-HHHHHHHHHHHh
Q 013602 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYI-DDIVKGCLAALD 335 (439)
Q Consensus 257 a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v-~Dva~a~~~~l~ 335 (439)
..|.+..+ .+++++++||+.+++......... +.. .........+..|.+++..+.++++ +|+++++..++.
T Consensus 131 ~~~~~~~~----~~~~~~~vr~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~ 203 (350)
T d1xgka_ 131 TVENYVRQ----LGLPSTFVYAGIYNNNFTSLPYPL--FQM-ELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFK 203 (350)
T ss_dssp HHHHHHHT----SSSCEEEEEECEEGGGCBSSSCSS--CBE-EECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----hccCceeeeeceeecccccccccc--ccc-cccccccceeeecccCCCcceEEEeHHHHHHHHHHHHh
Confidence 88877665 488999999999887532211100 000 0011112233344567788888886 799999999997
Q ss_pred hchhccCCCCCccCCCCCcEEEecCCCcccHHHHHHHHHHHhCCcccccccc
Q 013602 336 TAEKSTGSGGKKRGRAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK 387 (439)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~ 387 (439)
+.... ..|+.|++++ +.+|+.|+++++.+.+|.+.++..+|
T Consensus 204 ~~~~~----------~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp 244 (350)
T d1xgka_ 204 DGPQK----------WNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVP 244 (350)
T ss_dssp HCHHH----------HTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECS
T ss_pred CChhh----------cCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECC
Confidence 65322 1238999987 67999999999999999988776555
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=2.4e-22 Score=183.39 Aligned_cols=216 Identities=15% Similarity=0.051 Sum_probs=154.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
+++|+||||||+++||+++++.|+++|++|++.+|+. +.+...+.+++.+|+++. ++.+++++ ++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~------------~~l~~~~~~~~~~Dv~~~--~~~~~~~~g~i 67 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE------------ELLKRSGHRYVVCDLRKD--LDLLFEKVKEV 67 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH------------HHHHHTCSEEEECCTTTC--HHHHHHHSCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH------------HHHHhcCCcEEEcchHHH--HHHHHHHhCCC
Confidence 5789999999999999999999999999999999931 122334667889999864 44455544 56
Q ss_pred cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 176 d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p 247 (439)
|++|||||..... .+.++++..+++|+.++..+.+++ ++.+. .++|++||..... ....
T Consensus 68 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~-G~ii~i~S~~~~~------------~~~~ 134 (234)
T d1o5ia_ 68 DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGW-GRIVAITSFSVIS------------PIEN 134 (234)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS------------CCTT
T ss_pred cEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccc-ccccccccccccc------------cccc
Confidence 9999999974432 234556788999999987777765 34443 3999999976532 1134
Q ss_pred CChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHH
Q 013602 248 ASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~ 324 (439)
...|+.+|.+.+.+++.++.++ |+++++|.||.+..+..... .-......+.+.-+... +...+
T Consensus 135 ~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~-~~~~~~~~~~~~~pl~R------------~~~pe 201 (234)
T d1o5ia_ 135 LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKEL-LSEEKKKQVESQIPMRR------------MAKPE 201 (234)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHH-SCHHHHHHHHTTSTTSS------------CBCHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhh-cCHHHHHHHHhcCCCCC------------CcCHH
Confidence 5789999999999999999885 89999999999976632100 00112233333333222 56689
Q ss_pred HHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 325 DIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 325 Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
|+|.+++.++...... ..|+++.+.+|-
T Consensus 202 diA~~v~fL~S~~s~~----------itG~~i~vDGG~ 229 (234)
T d1o5ia_ 202 EIASVVAFLCSEKASY----------LTGQTIVVDGGL 229 (234)
T ss_dssp HHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred HHHHHHHHHhChhhcC----------CcCcEEEECccc
Confidence 9999999988654432 345899987763
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=9.4e-23 Score=183.33 Aligned_cols=191 Identities=15% Similarity=0.103 Sum_probs=135.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
.|+|||||||||||++++++|+++|+ +|+++.|.... .... +..+..|..++.+.+.. .+|
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------------~~~~---~~~~~~d~~~~~~~~~~-~~d 64 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------------EHPR---LDNPVGPLAELLPQLDG-SID 64 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------------CCTT---EECCBSCHHHHGGGCCS-CCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------------hccc---ccccccchhhhhhcccc-chh
Confidence 37999999999999999999999998 66666663221 1122 33455555544443322 359
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKK 256 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~ 256 (439)
+|||++|... ....+...+..+|+.++.+++++|++.+.. ++|++||.++++ .+.+.|..+|.
T Consensus 65 ~vi~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~-~~i~~Ss~~~~~--------------~~~~~y~~~K~ 127 (212)
T d2a35a1 65 TAFCCLGTTI--KEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGADA--------------KSSIFYNRVKG 127 (212)
T ss_dssp EEEECCCCCH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHHHH
T ss_pred eeeeeeeeec--cccccccccccchhhhhhhccccccccccc-cccccccccccc--------------ccccchhHHHH
Confidence 9999998632 233556788999999999999999998865 999999988764 34578999999
Q ss_pred HHHHHHHHHHhHhCC-cEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHh
Q 013602 257 AGEEIAHTYNHIYGL-SLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335 (439)
Q Consensus 257 a~E~~~~~~~~~~gi-~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 335 (439)
.+|..+++ .++ +++++||+.|||+....... . .+ ...+..+ ....+.+||++|+|++++.+++
T Consensus 128 ~~E~~l~~----~~~~~~~I~Rp~~v~G~~~~~~~~--~----~~-~~~~~~~-----~~~~~~~i~v~DvA~ai~~~~~ 191 (212)
T d2a35a1 128 ELEQALQE----QGWPQLTIARPSLLFGPREEFRLA--E----IL-AAPIARI-----LPGKYHGIEACDLARALWRLAL 191 (212)
T ss_dssp HHHHHHTT----SCCSEEEEEECCSEESTTSCEEGG--G----GT-TCCCC---------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhccc----cccccceeeCCcceeCCcccccHH--H----HH-HHHHhhc-----cCCCCcEEEHHHHHHHHHHHHc
Confidence 99988765 366 59999999999997652111 0 11 1111111 0122356999999999999988
Q ss_pred hchh
Q 013602 336 TAEK 339 (439)
Q Consensus 336 ~~~~ 339 (439)
++..
T Consensus 192 ~~~~ 195 (212)
T d2a35a1 192 EEGK 195 (212)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6553
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.88 E-value=1.2e-21 Score=183.20 Aligned_cols=224 Identities=14% Similarity=0.169 Sum_probs=156.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
++||+||||||+++||++++++|+++|++|++.+|+.+ ...+...+ ....+.++.+|++|.++++++++.+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~l~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE----RLAELETD--HGDNVLGIVGDVRSLEDQKQAASRCVAR 76 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH--HGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHH--cCCCeeEEecccccHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999432 11111111 2357899999999999998888764
Q ss_pred --CccEEEEcccccCccc-----cc----cChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCC
Q 013602 174 --SFTHVMHLAAQAGVRY-----AM----QNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~-----~~----~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~ 238 (439)
++|++|||||...... .. ++++..+++|+.|+..+.+++ ++.+ .++|++||...+-
T Consensus 77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--g~iI~i~S~~~~~------- 147 (276)
T d1bdba_ 77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR--GNVIFTISNAGFY------- 147 (276)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTS-------
T ss_pred hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC--CCceeeeechhcc-------
Confidence 7899999999743321 11 235688999999977777665 3444 2888888855321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh--CCcEEEEeeccccCCCCCCCC--------hHHHHHHHHHcCCCCcee
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY--GLSLTGLRFFTVYGPWGRPDM--------AYFFFTRDILNRKSIPIF 308 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~--gi~~~ilrpg~v~G~~~~~~~--------~~~~~~~~~~~g~~~~~~ 308 (439)
.......|+.+|.+.+.+++.++.++ ++++++|.||.|..+-..+.. ....+...+....+...
T Consensus 148 -----~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR- 221 (276)
T d1bdba_ 148 -----PNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGR- 221 (276)
T ss_dssp -----TTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTSS-
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCCC-
Confidence 11235689999999999999999885 599999999999765321110 00112222223323222
Q ss_pred ecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 309 ESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 309 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
+...+|+|.+++.++..+... -..|+++++.+|
T Consensus 222 -----------~g~peeva~~v~fL~S~~~a~---------~itG~~i~VDGG 254 (276)
T d1bdba_ 222 -----------MPEVEEYTGAYVFFATRGDAA---------PATGALLNYDGG 254 (276)
T ss_dssp -----------CCCGGGGSHHHHHHHCHHHHT---------TCSSCEEEESSS
T ss_pred -----------CcCHHHHHHHHHHHcCCcccC---------CeeCcEEEECcC
Confidence 445799999999887533211 134489998776
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.88 E-value=3.3e-21 Score=179.88 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=161.7
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
.+++||++|||||+++||++++++|+++|++|++.+|+... .......+. .....+.++.+|++|++++.++++.+
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~---~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~ 90 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE---SAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEA 90 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchH---HHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHH
Confidence 34889999999999999999999999999999999984321 111111111 12356889999999999999888765
Q ss_pred -----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDR 243 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~ 243 (439)
++|++|||||..... ...+++...+++|+.++..+.+++...-. .+++++++|..... .
T Consensus 91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~-----------~ 159 (272)
T d1g0oa_ 91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA-----------K 159 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC-----------S
T ss_pred HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc-----------c
Confidence 689999999975443 23445568899999999999998865432 23788887754211 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCC----------CCCChHHHHH-HHHHcCCCCceee
Q 013602 244 TDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWG----------RPDMAYFFFT-RDILNRKSIPIFE 309 (439)
Q Consensus 244 ~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~----------~~~~~~~~~~-~~~~~g~~~~~~~ 309 (439)
.......|+.+|++.+.+++.++.++ ||++++|.||.|-.+.. .......... .......+..
T Consensus 160 ~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Plg--- 236 (272)
T d1g0oa_ 160 AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLR--- 236 (272)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTC---
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccCCCC---
Confidence 11345679999999999999999884 89999999999965410 0000000111 1111222221
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
-+...+|+|.+++.++...... ..|+++.+.+|.
T Consensus 237 ---------R~~~peevA~~v~fL~s~~s~~----------itG~~i~vDGG~ 270 (272)
T d1g0oa_ 237 ---------RVGLPIDIARVVCFLASNDGGW----------VTGKVIGIDGGA 270 (272)
T ss_dssp ---------SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred ---------CCcCHHHHHHHHHHHhCchhcC----------ccCceEeECCCC
Confidence 2577899999999998754432 345889888774
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.9e-22 Score=183.66 Aligned_cols=203 Identities=14% Similarity=0.036 Sum_probs=149.4
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
+...||++|||||+++||++++++|+++|++|++.+|+.++ ......+. ....++.++.+|++|.++++++++.+
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~----l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHG----LEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 34789999999999999999999999999999999994432 11111111 12357889999999999999888754
Q ss_pred -----CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|++|||||...... ..+.++..+++|+.|+.++.+++ ++.+ ..+||++||...+.
T Consensus 79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~~~~~--------- 148 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGHV--------- 148 (244)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-CC---------
T ss_pred HHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecchhcC---------
Confidence 6899999999865432 34455689999999987777765 4444 34999999977532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh------CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCC
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY------GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~------gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
+......|+.||++.+.+.+.++.++ |+++++|.||.|-.+... ......
T Consensus 149 ---~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~--------------~~~~~~------- 204 (244)
T d1yb1a_ 149 ---SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIK--------------NPSTSL------- 204 (244)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTT--------------CTHHHH-------
T ss_pred ---CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhh--------------CcCccc-------
Confidence 11234789999999999999998862 799999999998655221 000011
Q ss_pred cceeeeeeHHHHHHHHHHHHhhch
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
...+..+|+|+.++..+....
T Consensus 205 ---~~~~~pe~va~~i~~~~~~~~ 225 (244)
T d1yb1a_ 205 ---GPTLEPEEVVNRLMHGILTEQ 225 (244)
T ss_dssp ---CCCCCHHHHHHHHHHHHHTTC
T ss_pred ---cCCCCHHHHHHHHHHHHhcCC
Confidence 123457999999998776544
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=8.7e-22 Score=182.14 Aligned_cols=213 Identities=16% Similarity=0.109 Sum_probs=150.0
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh---hcCCeEEEEcccCCHHHHHHhhcc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
..++|+||||||+++||+++++.|+++|++|++.+|+.+ .......+.. ....+.++++|++|+++++++++.
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~----~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~ 82 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG----NIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSA 82 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999432 1111112111 124688899999999999998877
Q ss_pred c-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCC-CCeEEEecCCcccCCCCCCCC
Q 013602 173 V-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANP-QPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 173 ~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~-~~~~V~~SS~~v~g~~~~~~~ 238 (439)
+ ++|++|||||..... .+.++++..+++|+.++..+.+++ ++.+. ..+||++||.+.+..
T Consensus 83 ~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~------ 156 (257)
T d1xg5a_ 83 IRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV------ 156 (257)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC------
T ss_pred HHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCC------
Confidence 6 689999999975432 335566789999999987776665 34332 349999999765321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhH-----hCCcEEEEeeccccCCCCC--CCChHHHHHHHHHcCCCCceeecC
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHI-----YGLSLTGLRFFTVYGPWGR--PDMAYFFFTRDILNRKSIPIFESP 311 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~-----~gi~~~ilrpg~v~G~~~~--~~~~~~~~~~~~~~g~~~~~~~~~ 311 (439)
.+......|+.+|.+.+.+++.++.+ +|+++++|.||.+-.+... .+... ......
T Consensus 157 ----~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~----~~~~~~--------- 219 (257)
T d1xg5a_ 157 ----LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDP----EKAAAT--------- 219 (257)
T ss_dssp ----CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCH----HHHHHH---------
T ss_pred ----CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhH----HHHHhc---------
Confidence 01123456999999999999999875 3799999999988654110 00000 011110
Q ss_pred CCCcceeeeeeHHHHHHHHHHHHhhch
Q 013602 312 DHGTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 312 ~~~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
.....++..+|+|.+++.++..+.
T Consensus 220 ---~~~~r~~~pedvA~~v~fL~s~~a 243 (257)
T d1xg5a_ 220 ---YEQMKCLKPEDVAEAVIYVLSTPA 243 (257)
T ss_dssp ---HC---CBCHHHHHHHHHHHHHSCT
T ss_pred ---CCCCCCcCHHHHHHHHHHHhCChh
Confidence 111235778999999999987665
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.1e-21 Score=178.24 Aligned_cols=224 Identities=16% Similarity=0.115 Sum_probs=163.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-Cc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-SF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 175 (439)
++||++|||||+++||+++++.|+++|++|++.+|+.+ ..++.....++....+|+.+.+.++.+.+.. ++
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~--------~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i 75 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES--------KLQELEKYPGIQTRVLDVTKKKQIDQFANEVERL 75 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH--------HHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHHHhccCCceeeeeccccccccccccccccc
Confidence 78999999999999999999999999999999999321 1222334568889999999999888888776 68
Q ss_pred cEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQP 247 (439)
Q Consensus 176 d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p 247 (439)
|++|||||..... .+.++++..+++|+.++..+.+++. +.+ ..+||++||.... ..+...
T Consensus 76 d~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~-~g~Ii~isS~~~~-----------~~~~~~ 143 (245)
T d2ag5a1 76 DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSVASS-----------VKGVVN 143 (245)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTT-----------TBCCTT
T ss_pred eeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCC-Cceeeeeechhhc-----------cCCccc
Confidence 9999999986543 2344567899999999888877664 333 2399999985420 011134
Q ss_pred CChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCC----CChHHHHHHHHHcCCCCceeecCCCCcceeee
Q 013602 248 ASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRP----DMAYFFFTRDILNRKSIPIFESPDHGTVARDF 320 (439)
Q Consensus 248 ~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (439)
...|+.+|.+.+.+++.++.++ |+++++|.||.|..|.... ......+...+....+... +
T Consensus 144 ~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R------------~ 211 (245)
T d2ag5a1 144 RCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGR------------F 211 (245)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSS------------C
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCCC------------C
Confidence 5789999999999999999985 8999999999998753110 0011122333333333222 5
Q ss_pred eeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 321 TYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 321 i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
...+|+|.++..++...... ..|+++.+.+|.
T Consensus 212 ~~pedva~~v~fL~s~~s~~----------iTG~~i~VDGG~ 243 (245)
T d2ag5a1 212 ATAEEIAMLCVYLASDESAY----------VTGNPVIIDGGW 243 (245)
T ss_dssp EEHHHHHHHHHHHHSGGGTT----------CCSCEEEECTTG
T ss_pred cCHHHHHHHHHHHhChhhCC----------CcCceEEeCCCc
Confidence 67899999999998755432 345899988764
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.88 E-value=1.6e-21 Score=178.44 Aligned_cols=200 Identities=16% Similarity=0.174 Sum_probs=147.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCe-------EEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDG-------VLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFD 171 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~-------V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~ 171 (439)
+.||||||+++||++++++|+++|++ |++.+|+.+ .......+.. ....+.++.+|++|.++++++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~----~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~ 77 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAA----DLEKISLECRAEGALTDTITADISDMADVRRLTT 77 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHH----HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 35899999999999999999999997 888888332 1111112211 22467889999999999998887
Q ss_pred cc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCC
Q 013602 172 VV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 172 ~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~ 238 (439)
.+ ++|++|||||..... .+.++++..+++|+.|+..+.+++ ++.+. .+||++||...+.
T Consensus 78 ~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Ii~isS~~~~~------- 149 (240)
T d2bd0a1 78 HIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS-GHIFFITSVAATK------- 149 (240)
T ss_dssp HHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS-------
T ss_pred HHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCC-CceEEEechhhcC-------
Confidence 65 689999999975432 235566789999999977777766 34443 3999999976532
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCc
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGT 315 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..+.... .. ..
T Consensus 150 -----~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~--------------~~---------~~ 201 (240)
T d2bd0a1 150 -----AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGK--------------VD---------DE 201 (240)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCC--------------CC---------ST
T ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhh--------------cC---------Hh
Confidence 11345789999999999999998884 8999999999997763210 00 01
Q ss_pred ceeeeeeHHHHHHHHHHHHhhchh
Q 013602 316 VARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 316 ~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
....+...+|+|++++.++..+..
T Consensus 202 ~~~~~~~PedvA~~v~~l~s~~~~ 225 (240)
T d2bd0a1 202 MQALMMMPEDIAAPVVQAYLQPSR 225 (240)
T ss_dssp TGGGSBCHHHHHHHHHHHHTSCTT
T ss_pred hHhcCCCHHHHHHHHHHHHcCCcc
Confidence 111245679999999999887653
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=1.9e-22 Score=190.75 Aligned_cols=204 Identities=16% Similarity=0.040 Sum_probs=145.3
Q ss_pred cccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCC-----hhHHHHHHHhhhcCCeEEEEcccCCHHHHHH
Q 013602 94 VRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD-----PSLKKARQALLERSGIFIVEGDINDMALLKK 168 (439)
Q Consensus 94 ~~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~-----~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~ 168 (439)
|...+||++|||||+++||++++++|+++|++|++.+|+.+... ........+ .. .......+|++|.+++++
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~d~~~~~~~~~ 79 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEE-IR-RRGGKAVANYDSVEAGEK 79 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHH-HH-HTTCEEEEECCCGGGHHH
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHH-Hh-hcccccccccchHHHHHH
Confidence 34578999999999999999999999999999999998765321 111111111 12 234556788888877666
Q ss_pred hhccc-----CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCC
Q 013602 169 LFDVV-----SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTK 235 (439)
Q Consensus 169 ~~~~~-----~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~ 235 (439)
+++.+ ++|++|||||+.... .+.++++..+++|+.|+.++.+++ ++++. .+||++||...+-
T Consensus 80 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~IV~isS~~~~~---- 154 (302)
T d1gz6a_ 80 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNY-GRIIMTASASGIY---- 154 (302)
T ss_dssp HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHH----
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCC-cEEEEeCChhhcC----
Confidence 66543 689999999985442 234556789999999988877775 44443 3999999965421
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCC
Q 013602 236 VPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPD 312 (439)
Q Consensus 236 ~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 312 (439)
.......|+.+|.+.+.+++.++.++ ||++++|.||.+-.+... ..
T Consensus 155 --------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~---~~-------------------- 203 (302)
T d1gz6a_ 155 --------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTET---VM-------------------- 203 (302)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGG---GS--------------------
T ss_pred --------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhh---cC--------------------
Confidence 11345789999999999999999984 899999999976432111 00
Q ss_pred CCcceeeeeeHHHHHHHHHHHHhh
Q 013602 313 HGTVARDFTYIDDIVKGCLAALDT 336 (439)
Q Consensus 313 ~~~~~~~~i~v~Dva~a~~~~l~~ 336 (439)
......++..+|+|.+++.++..
T Consensus 204 -~~~~~~~~~PedvA~~v~fL~S~ 226 (302)
T d1gz6a_ 204 -PEDLVEALKPEYVAPLVLWLCHE 226 (302)
T ss_dssp -CHHHHHHSCGGGTHHHHHHHTST
T ss_pred -cHhhHhcCCHHHHHHHHHHHcCC
Confidence 01112234569999999988753
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.87 E-value=5.8e-22 Score=182.91 Aligned_cols=218 Identities=12% Similarity=0.057 Sum_probs=153.9
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----Cc
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-----SF 175 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~~ 175 (439)
++|||||+++||+.+++.|+++|++|++.+|+.+..+ +.. .. ...+..+|++|.++++++++.+ ++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~----~~~-~~----~~~~~~~dv~~~~~~~~~~~~~~~~~G~i 72 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKD----ELE-AF----AETYPQLKPMSEQEPAELIEAVTSAYGQV 72 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH----HHH-HH----HHHCTTSEECCCCSHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH----HHH-hh----hCcEEEeccCCHHHHHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999998543211 111 11 1123468888888777776654 68
Q ss_pred cEEEEcccccCc-----cccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 013602 176 THVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 176 d~Vi~~Ag~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~ 246 (439)
|++|||||.... ..+.++++..+++|+.++.++.+++ ++.+. .+||++||...+.. ..
T Consensus 73 DiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~-G~IV~isS~~~~~~------------~~ 139 (252)
T d1zmta1 73 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKS-GHIIFITSATPFGP------------WK 139 (252)
T ss_dssp CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCSTTTSC------------CT
T ss_pred CEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccccc-ceeecccccccccc------------cc
Confidence 999999996432 1234556789999999987777765 44442 39999999775431 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCC------hHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 247 PASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDM------AYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
....|+.+|.+.+.+++.++.++ |+++++|.||.|..+...... ........+.+..+...
T Consensus 140 ~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~R---------- 209 (252)
T d1zmta1 140 ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQR---------- 209 (252)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSS----------
T ss_pred cccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCCC----------
Confidence 34689999999999999999885 899999999999876432111 01123333333333322
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 210 --~g~pedvA~~v~fL~S~~s~~----------iTG~~i~vdGG~ 242 (252)
T d1zmta1 210 --LGTQKELGELVAFLASGSCDY----------LTGQVFWLAGGF 242 (252)
T ss_dssp --CBCHHHHHHHHHHHHTTSCGG----------GTTCEEEESTTC
T ss_pred --CcCHHHHHHHHHHHhCchhcC----------CcCCeEEECCCc
Confidence 456899999999998655432 345899998764
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.86 E-value=7.9e-21 Score=179.38 Aligned_cols=230 Identities=10% Similarity=0.052 Sum_probs=158.2
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
..+||++|||||+|+||++++++|+++|++|++++|+.... .....+. .....+.++.+|++|.++++++++..
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l----~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~ 97 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVL----KATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSEL 97 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHH----HHHHHHHHHhcCCceEEEEecccChHHHHHHhhhh
Confidence 47899999999999999999999999999999999944311 1111111 12357889999999999998877654
Q ss_pred -----CccEEEEcccccCcccc----ccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 -----SFTHVMHLAAQAGVRYA----MQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 -----~~d~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
++|++|||||....... ..+....+.+|..+...+...+ ........++.+||.....
T Consensus 98 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~--------- 168 (294)
T d1w6ua_ 98 IKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET--------- 168 (294)
T ss_dssp HHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH---------
T ss_pred hhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh---------
Confidence 78999999997544322 2334567888888866665543 2333333777777755321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCC-ChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPD-MAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..+..... ...........+..+...
T Consensus 169 ---~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~R--------- 236 (294)
T d1w6ua_ 169 ---GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGR--------- 236 (294)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTSS---------
T ss_pred ---cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCCCC---------
Confidence 11235679999999999999999885 89999999999987643211 011123333444433332
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+...+|+|.++..++...... ..|+++.+.+|..
T Consensus 237 ---~~~pediA~~v~fL~sd~s~~----------itG~~i~vDGG~~ 270 (294)
T d1w6ua_ 237 ---LGTVEELANLAAFLCSDYASW----------INGAVIKFDGGEE 270 (294)
T ss_dssp ---CBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTHH
T ss_pred ---CCCHHHHHHHHHHHhCchhcC----------CCCcEEEECCChh
Confidence 456899999999998654432 3458999988753
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=3.7e-21 Score=178.25 Aligned_cols=172 Identities=18% Similarity=0.161 Sum_probs=131.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHh---CCCeEEEEECCCCCCChhHHHHHHHhh---hcCCeEEEEcccCCHHHHHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKR---RGDGVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
++||+++||||+++||++++++|++ +|++|++.+|+.+. ......+.. ...++.++.+|++|++++++++
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~----l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~ 79 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESM----LRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLL 79 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHH----HHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHH----HHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHH
Confidence 7899999999999999999999986 79999999994321 111111111 2346889999999999988887
Q ss_pred ccc---------CccEEEEcccccCcc----c---cccChhHHHHHHHHHHHHHHHHHHhcCC-----CCeEEEecCCcc
Q 013602 171 DVV---------SFTHVMHLAAQAGVR----Y---AMQNPNSYVHSNIAGLVSLLEVCKNANP-----QPAIVWASSSSV 229 (439)
Q Consensus 171 ~~~---------~~d~Vi~~Ag~~~~~----~---~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-----~~~~V~~SS~~v 229 (439)
+.+ .+|++|||||..... . ..++++..+++|+.++..+.+++.+.-. ..+||++||...
T Consensus 80 ~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~ 159 (259)
T d1oaaa_ 80 SAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCA 159 (259)
T ss_dssp HHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGG
T ss_pred HHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 432 468999999974321 1 2234567899999999999998864321 238999999765
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH-hCCcEEEEeeccccCC
Q 013602 230 YGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI-YGLSLTGLRFFTVYGP 284 (439)
Q Consensus 230 ~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~-~gi~~~ilrpg~v~G~ 284 (439)
+. +......|+.+|.+.+.+++.++.+ .|+++++|.||.|..+
T Consensus 160 ~~------------~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 160 LQ------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp TS------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred cC------------CCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCH
Confidence 32 1134678999999999999999887 4899999999999765
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.4e-21 Score=179.41 Aligned_cols=173 Identities=17% Similarity=0.146 Sum_probs=128.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChh--HHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS--LKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~--~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
.|.||||||+++||+++++.|+++|++|+.+.+.....+.. ..+...+. ....++.++.+|++|.++++++++.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 36789999999999999999999998766554322211111 11111111 23357899999999999999988775
Q ss_pred -CccEEEEcccccCcc----ccccChhHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 174 -SFTHVMHLAAQAGVR----YAMQNPNSYVHSNIAGLVSLLEVC----KNANPQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~----~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
.+|++|||||..... .+.++++..+++|+.|+.++.+++ ++.+. .+||++||.+..- +
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~-G~Iv~isS~~g~~------------~ 148 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGS-GRVLVTGSVGGLM------------G 148 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEEGGGTS------------C
T ss_pred cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCC-CceEEEechhhcC------------C
Confidence 689999999975543 234556789999999987777765 44553 3999999976431 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCC
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGP 284 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~ 284 (439)
......|+.+|++.+.+++.++.++ |+++++|.||.|-.+
T Consensus 149 ~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 149 LPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 1345789999999999999999884 899999999999765
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.86 E-value=2e-20 Score=172.17 Aligned_cols=174 Identities=18% Similarity=0.100 Sum_probs=130.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHH---hCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 98 NGISVLVTGAAGFVGTHVSAALK---RRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~---~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
.||+||||||+++||.+++++|+ ++|++|++.+|+.+..+.. ........++.++.+|++|+++++++++.+
T Consensus 1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~ 76 (248)
T d1snya_ 1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL----EDLAKNHSNIHILEIDLRNFDAYDKLVADIE 76 (248)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH----HHHHHHCTTEEEEECCTTCGGGHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHH----HHHHhcCCcEEEEEEEeccHHHHHHHHhhhH
Confidence 36899999999999999999997 4799999999987654322 111223468999999999999988877642
Q ss_pred ------CccEEEEcccccCcc--c---cccChhHHHHHHHHHHHHHHHHHH----hc----------CCCCeEEEecCCc
Q 013602 174 ------SFTHVMHLAAQAGVR--Y---AMQNPNSYVHSNIAGLVSLLEVCK----NA----------NPQPAIVWASSSS 228 (439)
Q Consensus 174 ------~~d~Vi~~Ag~~~~~--~---~~~~~~~~~~~Nv~gt~~ll~~~~----~~----------~~~~~~V~~SS~~ 228 (439)
++|++|||||+.... . ..++.+..+++|+.|+..+.+++. +. ....++|++||..
T Consensus 77 ~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~ 156 (248)
T d1snya_ 77 GVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL 156 (248)
T ss_dssp HHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred HHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 689999999975432 1 223355789999999877777653 21 1134899999964
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCC
Q 013602 229 VYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGP 284 (439)
Q Consensus 229 v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~ 284 (439)
-.- . ..+......|+.||++...+++.++.++ |+++++|+||.|-.+
T Consensus 157 g~~--~-------~~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 157 GSI--Q-------GNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp GCS--T-------TCCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred ccc--C-------CCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCC
Confidence 210 0 0111235689999999999999998874 899999999999765
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.85 E-value=2.2e-20 Score=172.12 Aligned_cols=203 Identities=14% Similarity=0.069 Sum_probs=138.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
|+.|+||||||+++||.+++++|+++|+ .|++.+|+.+..+ ........++.++.+|++|.++++++++.+
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~------~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~ 74 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT------ELKSIKDSRVHVLPLTVTCDKSLDTFVSKVG 74 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH------HHHTCCCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHH------HHHHhhCCceEEEEEecCCHHHHHHHHHHHH
Confidence 3568999999999999999999999996 6888898554321 112223457999999999999988887654
Q ss_pred ------CccEEEEcccccCccc-----cccChhHHHHHHHHHHHHHHHHHH----hcC----------CCCeEEEecCCc
Q 013602 174 ------SFTHVMHLAAQAGVRY-----AMQNPNSYVHSNIAGLVSLLEVCK----NAN----------PQPAIVWASSSS 228 (439)
Q Consensus 174 ------~~d~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~----------~~~~~V~~SS~~ 228 (439)
.+|+||||||+..... ..++.+..+++|+.|+.++.+++. +.+ ...++|++|+..
T Consensus 75 ~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~ 154 (250)
T d1yo6a1 75 EIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL 154 (250)
T ss_dssp HHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGG
T ss_pred HHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccc
Confidence 4899999999754321 233456799999999887777653 221 123788888754
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCC
Q 013602 229 VYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSI 305 (439)
Q Consensus 229 v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~ 305 (439)
.+-.... ......+...|+.||++...+++.++.++ |+++++|+||.|-.+-. +..
T Consensus 155 ~~~~~~~-----~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~---------------~~~- 213 (250)
T d1yo6a1 155 GSITDNT-----SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG---------------GKN- 213 (250)
T ss_dssp GCSTTCC-----STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------------
T ss_pred ccccCCc-----ccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCC---------------CCC-
Confidence 4321110 01111344579999999999999999874 89999999999864311 000
Q ss_pred ceeecCCCCcceeeeeeHHHHHHHHHHHHhhchh
Q 013602 306 PIFESPDHGTVARDFTYIDDIVKGCLAALDTAEK 339 (439)
Q Consensus 306 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 339 (439)
..+..++.++.++..+.....
T Consensus 214 -------------~~~~~e~~a~~~~~~~~~~~~ 234 (250)
T d1yo6a1 214 -------------AALTVEQSTAELISSFNKLDN 234 (250)
T ss_dssp ------------------HHHHHHHHHHHTTCCG
T ss_pred -------------CCCCHHHHHHHHHHHHhcCCC
Confidence 023468888888888876543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=9.2e-21 Score=177.15 Aligned_cols=183 Identities=19% Similarity=0.116 Sum_probs=129.4
Q ss_pred CCEE-EEECCCChHHHHHHHHHHhC-CCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc---
Q 013602 99 GISV-LVTGAAGFVGTHVSAALKRR-GDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV--- 173 (439)
Q Consensus 99 ~~~V-lItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 173 (439)
||+| |||||+++||.+++++|+++ |++|++.+|+.+..+...... .....++.++.+|++|.++++++++.+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l---~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~ 78 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL---QAEGLSPRFHQLDIDDLQSIRALRDFLRKE 78 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH---HHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH---HhcCCcEEEEEEecCCHHHHHHHHHHHHHh
Confidence 5555 89999999999999999986 899999999543221111111 112357899999999999999888765
Q ss_pred --CccEEEEcccccCcccc----ccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccC-CCCCCC--------
Q 013602 174 --SFTHVMHLAAQAGVRYA----MQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYG-LNTKVP-------- 237 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g-~~~~~~-------- 237 (439)
++|++|||||+...... .++.+..+++|+.|+..+.+++...- ...+||++||..... .....+
T Consensus 79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~ 158 (275)
T d1wmaa1 79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRS 158 (275)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHC
T ss_pred cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcc
Confidence 79999999998644322 23455789999999999999886432 112999999954321 000000
Q ss_pred --C------------------CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh-------CCcEEEEeeccccCC
Q 013602 238 --F------------------SEKDRTDQPASLYAATKKAGEEIAHTYNHIY-------GLSLTGLRFFTVYGP 284 (439)
Q Consensus 238 --~------------------~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~-------gi~~~ilrpg~v~G~ 284 (439)
. ........+...|+.||++...+++.+++++ |+++++|+||.|-.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 159 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 232 (275)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred cccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence 0 0000111345789999999999988777653 899999999999654
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.84 E-value=4e-20 Score=171.22 Aligned_cols=208 Identities=22% Similarity=0.164 Sum_probs=147.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV---- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 173 (439)
+.+||||||+|+||.+++++|+++|+ +|+++.|+....+...............+.++.+|++|.++++++++.+
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~ 88 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDV 88 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccccc
Confidence 45999999999999999999999999 5787888543333222221111122356899999999999999988765
Q ss_pred CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 013602 174 SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPAS 249 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~ 249 (439)
++|.||||||...... ..++....+++|+.|+.++.+++...+.. +||++||....- ......
T Consensus 89 ~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~-~iv~~SS~a~~~------------g~~~~~ 155 (259)
T d2fr1a1 89 PLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLT-AFVLFSSFASAF------------GAPGLG 155 (259)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCS-EEEEEEEHHHHT------------CCTTCT
T ss_pred cccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCc-eEeeecchhhcc------------CCcccH
Confidence 5899999999755432 23344578899999999999988877644 999999965431 113467
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHH
Q 013602 250 LYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKG 329 (439)
Q Consensus 250 ~Y~~sK~a~E~~~~~~~~~~gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a 329 (439)
.|+.+|.+.+.+.++++.+ |+++++|+||.+.+++..... ....++. .+ ...+..++++++
T Consensus 156 ~YaAaka~l~~la~~~~~~-Gi~v~~I~pg~~~~~g~~~~~-----~~~~~~~----------~G---~~~~~~~~~~~~ 216 (259)
T d2fr1a1 156 GYAPGNAYLDGLAQQRRSD-GLPATAVAWGTWAGSGMAEGP-----VADRFRR----------HG---VIEMPPETACRA 216 (259)
T ss_dssp TTHHHHHHHHHHHHHHHHT-TCCCEEEEECCBC-----------------CTT----------TT---EECBCHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhC-CCCEEECCCCcccCCccccch-----HHHHHHh----------cC---CCCCCHHHHHHH
Confidence 8999999999999988765 999999999998876432110 0000000 11 235678999999
Q ss_pred HHHHHhhch
Q 013602 330 CLAALDTAE 338 (439)
Q Consensus 330 ~~~~l~~~~ 338 (439)
+..++....
T Consensus 217 l~~~l~~~~ 225 (259)
T d2fr1a1 217 LQNALDRAE 225 (259)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 999887654
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=1.7e-19 Score=166.87 Aligned_cols=229 Identities=12% Similarity=0.076 Sum_probs=161.3
Q ss_pred CCCCEEEEECCCC--hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAG--FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
++||+||||||+| +||+++++.|+++|++|++.+|+.. .................+..|+.+.+++.+.++..
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK----LKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELG 78 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT----THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhh
Confidence 6899999999999 8999999999999999999999643 12222222223456788899999998877777554
Q ss_pred ----CccEEEEcccccCcccc---------ccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVRYA---------MQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFS 239 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~~---------~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~ 239 (439)
++|++||||+....... .+.....+.+|+.+...+.+++.... ..+.||++||.+...
T Consensus 79 ~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~-------- 150 (258)
T d1qsga_ 79 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-------- 150 (258)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS--------
T ss_pred hcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc--------
Confidence 68999999987544321 11223567788888888888776432 123788888866421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcc
Q 013602 240 EKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTV 316 (439)
Q Consensus 240 e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (439)
+......|+.+|.+.+.+++.++.++ |+++++|+||.|..+...................+...
T Consensus 151 ----~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R--------- 217 (258)
T d1qsga_ 151 ----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR--------- 217 (258)
T ss_dssp ----BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSS---------
T ss_pred ----CCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCCCCC---------
Confidence 11345789999999999999999985 79999999999987754322222233333333333322
Q ss_pred eeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 317 ARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 317 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
+...+|+|.++..++...... ..|+++.+.+|-.
T Consensus 218 ---~~~peeia~~v~fL~s~~s~~----------itG~~i~vDGG~~ 251 (258)
T d1qsga_ 218 ---TVTIEDVGNSAAFLCSDLSAG----------ISGEVVHVDGGFS 251 (258)
T ss_dssp ---CCCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTGG
T ss_pred ---CcCHHHHHHHHHHHhCchhcC----------ccCceEEECcCHH
Confidence 456899999999998654432 4458999987754
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.1e-19 Score=165.17 Aligned_cols=209 Identities=11% Similarity=0.103 Sum_probs=146.8
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc--
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV-- 173 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 173 (439)
+.+||++|||||+++||.+++++|+++|++|++++|+.+..+ ....+ -........+|+.+.+.+++.+...
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~----~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGE----AQAKK--LGNNCVFAPADVTSEKDVQTALALAKG 75 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHH----HHHHH--HCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH----HHHHH--hCCCccccccccccccccccccccccc
Confidence 378999999999999999999999999999999999664321 11111 2357888999999988777666543
Q ss_pred ---CccEEEEcccccCcc----------ccccChhHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCCcccC
Q 013602 174 ---SFTHVMHLAAQAGVR----------YAMQNPNSYVHSNIAGLVSLLEVCKNA---------NPQPAIVWASSSSVYG 231 (439)
Q Consensus 174 ---~~d~Vi~~Ag~~~~~----------~~~~~~~~~~~~Nv~gt~~ll~~~~~~---------~~~~~~V~~SS~~v~g 231 (439)
..|.++++++..... .+.+.++..+++|+.++.++.+++.+. ....+||++||...+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~ 155 (248)
T d2o23a1 76 KFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE 155 (248)
T ss_dssp HHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred ccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc
Confidence 579999888763321 112345678999999999999887542 1123899999976542
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCcee
Q 013602 232 LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIF 308 (439)
Q Consensus 232 ~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~ 308 (439)
+......|+.+|.+.+.+++.++.++ |+++++|.||.|..+.... ....+...+.+.. ++.
T Consensus 156 ------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~--pl~ 219 (248)
T d2o23a1 156 ------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS--LPEKVCNFLASQV--PFP 219 (248)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------CHHHHTC--SSS
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhc--CCHHHHHHHHhcC--CCC
Confidence 11346789999999999999999985 8999999999997663221 0111111122221 110
Q ss_pred ecCCCCcceeeeeeHHHHHHHHHHHHh
Q 013602 309 ESPDHGTVARDFTYIDDIVKGCLAALD 335 (439)
Q Consensus 309 ~~~~~~~~~~~~i~v~Dva~a~~~~l~ 335 (439)
.-+...+|+|.+++.++.
T Consensus 220 ---------~R~g~peevA~~v~fL~s 237 (248)
T d2o23a1 220 ---------SRLGDPAEYAHLVQAIIE 237 (248)
T ss_dssp ---------CSCBCHHHHHHHHHHHHH
T ss_pred ---------CCCcCHHHHHHHHHHHHh
Confidence 114578999999998875
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.2e-19 Score=168.77 Aligned_cols=205 Identities=15% Similarity=0.120 Sum_probs=145.9
Q ss_pred cccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh--hhcCCeEEEEcccCCHHHHHHhhc
Q 013602 94 VRARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDINDMALLKKLFD 171 (439)
Q Consensus 94 ~~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~ 171 (439)
|..++||++|||||+++||++++++|+++|++|++++|+.+ ...+...+. .....+..+.+|+.+.+.+...++
T Consensus 9 ~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~----~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 84 (269)
T d1xu9a_ 9 PEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE----TLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVA 84 (269)
T ss_dssp GGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHH
Confidence 34479999999999999999999999999999999999432 112222221 233567789999999988877766
Q ss_pred cc-----CccEEEEcccccCccc----cccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCC
Q 013602 172 VV-----SFTHVMHLAAQAGVRY----AMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYGLNTKVPF 238 (439)
Q Consensus 172 ~~-----~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g~~~~~~~ 238 (439)
.. .+|+++||||...... +.++....+++|+.++..+.+.+. +.+ .++|++||.+.+-
T Consensus 85 ~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~--G~ii~isS~~~~~------- 155 (269)
T d1xu9a_ 85 QAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN--GSIVVVSSLAGKV------- 155 (269)
T ss_dssp HHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEGGGTS-------
T ss_pred HHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC--CcceEeccchhcC-------
Confidence 54 5799999999754332 233445789999999777666653 333 3999999976532
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhHh-----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCC
Q 013602 239 SEKDRTDQPASLYAATKKAGEEIAHTYNHIY-----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDH 313 (439)
Q Consensus 239 ~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~-----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (439)
+......|+.||++.+.+++.++.++ +++++.|.||.|-.+ +......+..
T Consensus 156 -----~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~----------~~~~~~~~~~--------- 211 (269)
T d1xu9a_ 156 -----AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE----------TAMKAVSGIV--------- 211 (269)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH----------HHHHHSCGGG---------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc----------HHHHhccCCc---------
Confidence 11345799999999999999998873 589999999998653 2222222211
Q ss_pred CcceeeeeeHHHHHHHHHHHHhhch
Q 013602 314 GTVARDFTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 314 ~~~~~~~i~v~Dva~a~~~~l~~~~ 338 (439)
.......+++|+.++..+....
T Consensus 212 ---~~~~~~~e~~a~~i~~~~~~~~ 233 (269)
T d1xu9a_ 212 ---HMQAAPKEECALEIIKGGALRQ 233 (269)
T ss_dssp ---GGGCBCHHHHHHHHHHHHHTTC
T ss_pred ---cccCCCHHHHHHHHHHHhhcCC
Confidence 1123557899999887765433
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.82 E-value=1.2e-19 Score=165.57 Aligned_cols=194 Identities=14% Similarity=0.091 Sum_probs=138.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhc------
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFD------ 171 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~------ 171 (439)
+||+||||||+|+||+++++.|+++|++|+++++.... .......+.+|..+.++.+.+.+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE-------------EASASVIVKMTDSFTEQADQVTAEVGKLL 67 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT-------------TSSEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc-------------cccccceeecccCcHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999985432 11233455666665555443332
Q ss_pred -ccCccEEEEcccccCcc-----ccccChhHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCC
Q 013602 172 -VVSFTHVMHLAAQAGVR-----YAMQNPNSYVHSNIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSEKDRT 244 (439)
Q Consensus 172 -~~~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~ 244 (439)
..++|++|||||..... ...++++..+++|+.++.++.+++.+.. ...+||++||.+.+. .
T Consensus 68 ~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------~ 135 (236)
T d1dhra_ 68 GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD------------G 135 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------C
T ss_pred CCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC------------C
Confidence 22589999999953321 1234456789999999988888875431 123999999976542 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHh-----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceee
Q 013602 245 DQPASLYAATKKAGEEIAHTYNHIY-----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARD 319 (439)
Q Consensus 245 ~~p~~~Y~~sK~a~E~~~~~~~~~~-----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (439)
......|+.||.+.+.+++.++.++ |+++++|.||.|..| +......... .-.
T Consensus 136 ~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~----------~~~~~~~~~~------------~~~ 193 (236)
T d1dhra_ 136 TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP----------MNRKSMPEAD------------FSS 193 (236)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH----------HHHHHSTTSC------------GGG
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC----------cchhhCccch------------hhc
Confidence 1335789999999999999998774 699999999999765 2222211111 123
Q ss_pred eeeHHHHHHHHHHHHhhch
Q 013602 320 FTYIDDIVKGCLAALDTAE 338 (439)
Q Consensus 320 ~i~v~Dva~a~~~~l~~~~ 338 (439)
|+..+|+|+.+..++....
T Consensus 194 ~~~pe~va~~~~~l~s~~~ 212 (236)
T d1dhra_ 194 WTPLEFLVETFHDWITGNK 212 (236)
T ss_dssp SEEHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHhCCCc
Confidence 6778999999999886544
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.80 E-value=5.3e-19 Score=161.14 Aligned_cols=192 Identities=14% Similarity=0.130 Sum_probs=134.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHH-------hhcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKK-------LFDV 172 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~-------~~~~ 172 (439)
.+||||||+++||++++++|+++|++|++++|+.... ......+.+|+.+.+.... .++.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ-------------ADSNILVDGNKNWTEQEQSILEQTASSLQG 69 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT-------------SSEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc-------------ccccceeccccCchhHHHHHHHHHHHHhcC
Confidence 4799999999999999999999999999999955321 1223345566665544332 2223
Q ss_pred cCccEEEEcccccCcc-cc----ccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 013602 173 VSFTHVMHLAAQAGVR-YA----MQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWASSSSVYGLNTKVPFSEKDRTDQ 246 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~-~~----~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~SS~~v~g~~~~~~~~e~~~~~~ 246 (439)
-++|+||||||..... .. .+.++..+++|+.++.++.+++.+... ..+||++||...+. +..
T Consensus 70 g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~------------~~~ 137 (235)
T d1ooea_ 70 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG------------PTP 137 (235)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------CCT
T ss_pred CCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC------------Ccc
Confidence 3689999999964321 11 233456799999999888888764321 13999999976542 113
Q ss_pred CCChHHHHHHHHHHHHHHHHhHh-----CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeee
Q 013602 247 PASLYAATKKAGEEIAHTYNHIY-----GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFT 321 (439)
Q Consensus 247 p~~~Y~~sK~a~E~~~~~~~~~~-----gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 321 (439)
....|+.+|.+.+.+++.++.++ +++++.|+||.+..+ +.+....... ...|+
T Consensus 138 ~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~----------~~~~~~~~~~------------~~~~~ 195 (235)
T d1ooea_ 138 SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP----------MNRKWMPNAD------------HSSWT 195 (235)
T ss_dssp TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH----------HHHHHSTTCC------------GGGCB
T ss_pred cccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc----------chhhhCcCCc------------cccCC
Confidence 45799999999999999998774 679999999998653 2222222211 12367
Q ss_pred eHHHHHHHHHHHHhhch
Q 013602 322 YIDDIVKGCLAALDTAE 338 (439)
Q Consensus 322 ~v~Dva~a~~~~l~~~~ 338 (439)
..+|+++.++.++..+.
T Consensus 196 ~~~~va~~~~~~l~~~~ 212 (235)
T d1ooea_ 196 PLSFISEHLLKWTTETS 212 (235)
T ss_dssp CHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHHhcCcc
Confidence 78999999887665544
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.80 E-value=4.6e-18 Score=158.44 Aligned_cols=228 Identities=12% Similarity=0.050 Sum_probs=149.6
Q ss_pred CCCCEEEEECCCC--hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGAAG--FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
++||++|||||+| +||.+++++|+++|++|++++|+.. ................++.+|+++.+++.++++.+
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~----~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES----LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVK 78 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT----THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHH
Confidence 6899999999877 8999999999999999999999632 11222222223456778899999999988877654
Q ss_pred ----CccEEEEcccccCccccc-----cChhHHHHH---HHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCC
Q 013602 174 ----SFTHVMHLAAQAGVRYAM-----QNPNSYVHS---NIAGLVSLLEVCKNAN-PQPAIVWASSSSVYGLNTKVPFSE 240 (439)
Q Consensus 174 ----~~d~Vi~~Ag~~~~~~~~-----~~~~~~~~~---Nv~gt~~ll~~~~~~~-~~~~~V~~SS~~v~g~~~~~~~~e 240 (439)
.+|++|||+|........ ........+ +......+.....+.. ....++++|+.+..+.
T Consensus 79 ~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~-------- 150 (274)
T d2pd4a1 79 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKY-------- 150 (274)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB--------
T ss_pred HHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeecccccccc--------
Confidence 689999999975443221 222222222 2223444444443322 2225666666654321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcce
Q 013602 241 KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVA 317 (439)
Q Consensus 241 ~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (439)
......|+.+|.+.+.+++.++.++ |+++++|.||.+..+...................+...
T Consensus 151 ----~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r---------- 216 (274)
T d2pd4a1 151 ----MAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRK---------- 216 (274)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSS----------
T ss_pred ----cccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhhhccC----------
Confidence 1345689999999999999998885 89999999999987643211111222222222222222
Q ss_pred eeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 318 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 318 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
+...+|+|.+++.++...... ..|+++.+.+|.
T Consensus 217 --~~~pedIA~~v~fL~S~~s~~----------itG~~i~vDGG~ 249 (274)
T d2pd4a1 217 --NVSLEEVGNAGMYLLSSLSSG----------VSGEVHFVDAGY 249 (274)
T ss_dssp --CCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred --CcCHHHHHHHHHHHhChhhCC----------CcCceEEECCCh
Confidence 456899999999998755432 345899998875
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.79 E-value=4e-18 Score=159.60 Aligned_cols=226 Identities=10% Similarity=-0.008 Sum_probs=149.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEE-----------------EEccc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFI-----------------VEGDI 160 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~-----------------~~~Dl 160 (439)
..+|||||+++||++++++|+++|++|++.+|.... .......+.. ....... ..+|+
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv 79 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAA---EANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV 79 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCB
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHH---HHHHHHHHHHhhcCCceEEEEeecccccccccccccccccC
Confidence 478999999999999999999999999998874321 1111111111 1223333 45568
Q ss_pred CCHHHHHHhhccc-----CccEEEEcccccCcccc----ccCh--------------hHHHHHHHHHHHHHHHHHHh---
Q 013602 161 NDMALLKKLFDVV-----SFTHVMHLAAQAGVRYA----MQNP--------------NSYVHSNIAGLVSLLEVCKN--- 214 (439)
Q Consensus 161 ~d~~~~~~~~~~~-----~~d~Vi~~Ag~~~~~~~----~~~~--------------~~~~~~Nv~gt~~ll~~~~~--- 214 (439)
++.++++++++.+ ++|++|||||....... .+++ ...+.+|+.++..+.+++.+
T Consensus 80 ~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 159 (284)
T d1e7wa_ 80 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA 159 (284)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhh
Confidence 8999888888654 68999999997543211 1111 13678999998888887542
Q ss_pred ------cCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCC
Q 013602 215 ------ANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPW 285 (439)
Q Consensus 215 ------~~~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~ 285 (439)
.+...++|+++|..... +......|+.+|.+.+.+++.++.++ |+++++|.||.+-...
T Consensus 160 ~~~~~~~~~~~~ii~~~s~~~~~------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~ 227 (284)
T d1e7wa_ 160 GTPAKHRGTNYSIINMVDAMTNQ------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD 227 (284)
T ss_dssp TSCGGGSCSCEEEEEECCTTTTS------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG
T ss_pred hhHHHhcCCCCcccccccccccC------------CccceeeeccccccchhhhHHHHHHhCCccccccccccccccccc
Confidence 12223788888766421 12345789999999999999999884 8999999999743222
Q ss_pred CCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCccc
Q 013602 286 GRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSPVP 365 (439)
Q Consensus 286 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t 365 (439)
. .............+. . + -+...+|+|.+++.++...... ..|+++.+.+|-.++
T Consensus 228 ~----~~~~~~~~~~~~~pl--~-----~----R~~~peeiA~~v~fL~S~~s~~----------itG~~i~VDGG~sl~ 282 (284)
T d1e7wa_ 228 D----MPPAVWEGHRSKVPL--Y-----Q----RDSSAAEVSDVVIFLCSSKAKY----------ITGTCVKVDGGYSLT 282 (284)
T ss_dssp G----SCHHHHHHHHTTCTT--T-----T----SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGC
T ss_pred c----CCHHHHHHHHhcCCC--C-----C----CCCCHHHHHHHHHHHhCchhcC----------ccCCeEEECcChhcc
Confidence 1 122344444443332 1 0 1456899999999998654432 345899998876544
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.76 E-value=2.4e-17 Score=155.22 Aligned_cols=231 Identities=11% Similarity=-0.013 Sum_probs=148.1
Q ss_pred cccCCCCEEEEECCCC--hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHH--h--hh---------cCCe-EEEE
Q 013602 94 VRARNGISVLVTGAAG--FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQA--L--LE---------RSGI-FIVE 157 (439)
Q Consensus 94 ~~~~~~~~VlItGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~--~~---------~~~v-~~~~ 157 (439)
+..++||++|||||+| +||+++++.|+++|++|++.+|+.. ....... . .. .... ....
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA-----LNIFETSLRRGKFDQSRVLPDGSLMEIKKVYP 77 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH-----HHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEE
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh-----hhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhh
Confidence 3458999999999887 9999999999999999999998221 1100000 0 00 0011 1222
Q ss_pred cc--c------------------CCHHHHHHhhcc----c-CccEEEEcccccCc------cccccChhHHHHHHHHHHH
Q 013602 158 GD--I------------------NDMALLKKLFDV----V-SFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAGLV 206 (439)
Q Consensus 158 ~D--l------------------~d~~~~~~~~~~----~-~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~gt~ 206 (439)
+| + .+.++++++++. + ++|++|||||.... ..+.+++...+++|+.++.
T Consensus 78 ~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~ 157 (297)
T d1d7oa_ 78 LDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFV 157 (297)
T ss_dssp ECTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred hhhhccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhh
Confidence 22 2 222222333332 2 67999999997421 1234456789999999999
Q ss_pred HHHHHHHhcCCC-CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH----hCCcEEEEeeccc
Q 013602 207 SLLEVCKNANPQ-PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI----YGLSLTGLRFFTV 281 (439)
Q Consensus 207 ~ll~~~~~~~~~-~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~----~gi~~~ilrpg~v 281 (439)
.+.+++...... +.++.+++.+.... .......|+.+|.+.+.+++.++.+ +|+++++|.||.|
T Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i 226 (297)
T d1d7oa_ 158 SLLSHFLPIMNPGGASISLTYIASERI-----------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPL 226 (297)
T ss_dssp HHHHHHGGGEEEEEEEEEEECGGGTSC-----------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_pred hhhhHHHHHhhcCCcceeeeehhhccc-----------ccccccceecccccccccccccchhccccceEEecccccccc
Confidence 999988654322 25556665443211 1134568999999999988876665 4899999999999
Q ss_pred cCCCCCCCChHHHHHHHHHcCCCCceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 282 ~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
..+..........+.....+.-+... +...+|+|.+++.++...... ..|+++.+.+|
T Consensus 227 ~T~~~~~~~~~~~~~~~~~~~~PlgR------------~~~peevA~~v~fL~S~~a~~----------itGq~i~vDGG 284 (297)
T d1d7oa_ 227 GSRAAKAIGFIDTMIEYSYNNAPIQK------------TLTADEVGNAAAFLVSPLASA----------ITGATIYVDNG 284 (297)
T ss_dssp BCCCSSCCSHHHHHHHHHHHHSSSCC------------CBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTT
T ss_pred cchhhhhccCCHHHHHHHHhCCCCCC------------CCCHHHHHHHHHHHhCchhcC----------CcCceEEECcC
Confidence 88765533333444444444433322 456899999999998654432 34588988776
Q ss_pred C
Q 013602 362 S 362 (439)
Q Consensus 362 ~ 362 (439)
-
T Consensus 285 ~ 285 (297)
T d1d7oa_ 285 L 285 (297)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=2.3e-17 Score=150.42 Aligned_cols=212 Identities=18% Similarity=0.143 Sum_probs=147.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc----C
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----S 174 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----~ 174 (439)
.|++|||||+++||++++++|+++|++|++.+|+.+ ..+....++|+++.....++.... .
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~---------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 65 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE---------------GEDLIYVEGDVTREEDVRRAVARAQEEAP 65 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC---------------SSSSEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc---------------cccceEeeccccchhhhHHHHHhhhcccc
Confidence 489999999999999999999999999999999543 245678899999988766665442 4
Q ss_pred ccEEEEcccccCcc--------ccccChhHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCCcccCCCCCCC
Q 013602 175 FTHVMHLAAQAGVR--------YAMQNPNSYVHSNIAGLVSLLEVCKNA---------NPQPAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~--------~~~~~~~~~~~~Nv~gt~~ll~~~~~~---------~~~~~~V~~SS~~v~g~~~~~~ 237 (439)
.+.++++++..... ...+..+..+++|+.+..++...+... +...+||++||...+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~------ 139 (241)
T d1uaya_ 66 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE------ 139 (241)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH------
T ss_pred ccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc------
Confidence 56667766643221 112334578899999988777766422 1123899999976532
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceeecCCCC
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHG 314 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|..+..... ............+. . +
T Consensus 140 ------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~--~~~~~~~~~~~~~~--~-----~ 204 (241)
T d1uaya_ 140 ------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL--PEKAKASLAAQVPF--P-----P 204 (241)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS--CHHHHHHHHTTCCS--S-----C
T ss_pred ------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchh--hhhHHHHHHhcCCC--C-----C
Confidence 11346799999999999999999884 89999999999976532111 11222223333221 1 0
Q ss_pred cceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCC
Q 013602 315 TVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTS 362 (439)
Q Consensus 315 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (439)
-+...+|+|.+++.++.. .. ..|+++.+.+|-
T Consensus 205 ----R~g~pedvA~~v~fL~s~-~~-----------iTG~~i~VDGG~ 236 (241)
T d1uaya_ 205 ----RLGRPEEYAALVLHILEN-PM-----------LNGEVVRLDGAL 236 (241)
T ss_dssp ----SCCCHHHHHHHHHHHHHC-TT-----------CCSCEEEESTTC
T ss_pred ----CCcCHHHHHHHHHHHHhC-CC-----------CCCCEEEECCcc
Confidence 145689999999998863 22 344899987764
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.75 E-value=1.8e-17 Score=153.86 Aligned_cols=229 Identities=11% Similarity=-0.007 Sum_probs=148.6
Q ss_pred CCCCEEEEECC--CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-
Q 013602 97 RNGISVLVTGA--AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV- 173 (439)
Q Consensus 97 ~~~~~VlItGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 173 (439)
++||++||||| +.+||.+++++|+++|++|++.+|+.. ................+++|+++.+++.++++.+
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~-----~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~ 78 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL-----RLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVT 78 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH-----HHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH-----HHHHHHHHHcCCceeeEeeecccccccccccchhh
Confidence 78999999995 457999999999999999999998442 1111111222346778999999998776665543
Q ss_pred -------CccEEEEcccccCccc---------cccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCC
Q 013602 174 -------SFTHVMHLAAQAGVRY---------AMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVP 237 (439)
Q Consensus 174 -------~~d~Vi~~Ag~~~~~~---------~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g~~~~~~ 237 (439)
.+|+++||||...... ..+.....+.+|..........+........+|+++|.....
T Consensus 79 ~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~------ 152 (268)
T d2h7ma1 79 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR------ 152 (268)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS------
T ss_pred hccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc------
Confidence 4799999999753221 112223466777777777777766543232455555444321
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCC------CCCC----hHHHHHHHHHcCCC
Q 013602 238 FSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWG------RPDM----AYFFFTRDILNRKS 304 (439)
Q Consensus 238 ~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~------~~~~----~~~~~~~~~~~g~~ 304 (439)
.......|+.+|.+.+.+++.++.++ |+++++|.||.|-.+.. .... ....+.....+.-+
T Consensus 153 ------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 226 (268)
T d2h7ma1 153 ------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAP 226 (268)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCT
T ss_pred ------cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcCC
Confidence 11235689999999999999999885 89999999999865411 0000 01112222222222
Q ss_pred CceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 305 IPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 305 ~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
... -+...+|+|.++..++...... ..|+++.+.+|..
T Consensus 227 l~r-----------r~~~p~dva~~v~fL~Sd~a~~----------iTG~~i~vDGG~~ 264 (268)
T d2h7ma1 227 IGW-----------NMKDATPVAKTVCALLSDWLPA----------TTGDIIYADGGAH 264 (268)
T ss_dssp TCC-----------CTTCCHHHHHHHHHHHSSSCTT----------CCSEEEEESTTGG
T ss_pred CCC-----------CCCCHHHHHHHHHHHhCchhcC----------ccCCEEEECcCcc
Confidence 211 1345699999999998643321 3458899887754
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.74 E-value=1.3e-16 Score=147.51 Aligned_cols=225 Identities=10% Similarity=0.026 Sum_probs=144.9
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCC----HHHHHHhhccc---
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND----MALLKKLFDVV--- 173 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~~~~~~~~~--- 173 (439)
++|||||+++||++++++|+++|++|++.+|+.+........ .........+..+..|+.+ .+.+.++++..
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVA-ELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA 81 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH-HHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHH-HHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999954321111111 1111223466667766654 34455544432
Q ss_pred --CccEEEEcccccCcccc---------------ccChhHHHHHHHHHHHHHHHHHHhcC--------CCCeEEEecCCc
Q 013602 174 --SFTHVMHLAAQAGVRYA---------------MQNPNSYVHSNIAGLVSLLEVCKNAN--------PQPAIVWASSSS 228 (439)
Q Consensus 174 --~~d~Vi~~Ag~~~~~~~---------------~~~~~~~~~~Nv~gt~~ll~~~~~~~--------~~~~~V~~SS~~ 228 (439)
++|++|||||+...... .......+..|..+............ ....++.+|+..
T Consensus 82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (266)
T d1mxha_ 82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM 161 (266)
T ss_dssp HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence 68999999997543211 11122456666666555555543321 112666777655
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCC
Q 013602 229 VYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSI 305 (439)
Q Consensus 229 v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~ 305 (439)
... .......|+.||.+.+.+++.++.++ |++++.|.||.+..+...+ ..+...+.+..+.
T Consensus 162 ~~~------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~----~~~~~~~~~~~pl 225 (266)
T d1mxha_ 162 TDL------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP----QETQEEYRRKVPL 225 (266)
T ss_dssp GGS------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC----HHHHHHHHTTCTT
T ss_pred ccc------------cCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC----HHHHHHHHhcCCC
Confidence 432 11346789999999999999999884 8999999999987664332 2333444444332
Q ss_pred ceeecCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCCCc
Q 013602 306 PIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNTSP 363 (439)
Q Consensus 306 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 363 (439)
.. -+...+|+|.+++.++...... ..|+++.+.+|-.
T Consensus 226 ~r-----------~~~~peeva~~v~fL~s~~s~~----------itG~~i~vDGG~~ 262 (266)
T d1mxha_ 226 GQ-----------SEASAAQIADAIAFLVSKDAGY----------ITGTTLKVDGGLI 262 (266)
T ss_dssp TS-----------CCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred CC-----------CCCCHHHHHHHHHHHhCchhCC----------ccCCeEEECccHh
Confidence 11 1346899999999998765532 3458999887754
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.70 E-value=2.6e-16 Score=150.27 Aligned_cols=173 Identities=11% Similarity=0.037 Sum_probs=116.2
Q ss_pred CCEEEEEC--CCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhh----------cCCeEEEE---------
Q 013602 99 GISVLVTG--AAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE----------RSGIFIVE--------- 157 (439)
Q Consensus 99 ~~~VlItG--atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----------~~~v~~~~--------- 157 (439)
+|.+|||| ++.+||..+++.|+++|++|++.++.......... ...+... ........
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKN-YKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH-HHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHH-HHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 68999999 55799999999999999999999873321000000 0000000 00112222
Q ss_pred -----------cccCCHHHHHHhhccc-----CccEEEEcccccCc------cccccChhHHHHHHHHHHHHHHHHHHhc
Q 013602 158 -----------GDINDMALLKKLFDVV-----SFTHVMHLAAQAGV------RYAMQNPNSYVHSNIAGLVSLLEVCKNA 215 (439)
Q Consensus 158 -----------~Dl~d~~~~~~~~~~~-----~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~ 215 (439)
+|+++.++++++++.+ ++|++|||||.... ..+.+++...+++|+.++..+.+++.+.
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 2555655555555443 68999999996432 1234566789999999999998888654
Q ss_pred C-CCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhH----hCCcEEEEeeccccC
Q 013602 216 N-PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI----YGLSLTGLRFFTVYG 283 (439)
Q Consensus 216 ~-~~~~~V~~SS~~v~g~~~~~~~~e~~~~~~p~~~Y~~sK~a~E~~~~~~~~~----~gi~~~ilrpg~v~G 283 (439)
- ...+||++||.+.... .+ .....|+.+|.+.+.+++.++.+ +||++++|.||.|-.
T Consensus 161 m~~~GsIv~iss~~~~~~----------~p-~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T 222 (329)
T d1uh5a_ 161 MKPQSSIISLTYHASQKV----------VP-GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKS 222 (329)
T ss_dssp EEEEEEEEEEECGGGTSC----------CT-TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred cccccccccceeehhccc----------cc-ccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccc
Confidence 2 1238999998665321 01 12457999999999999998876 489999999998854
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.66 E-value=2.5e-15 Score=138.06 Aligned_cols=218 Identities=15% Similarity=0.120 Sum_probs=131.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhccc-----
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVV----- 173 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 173 (439)
||.||||||+++||++++++|+++|++|++++|+... ...|+.+.+.......+.
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~--------------------~~~d~~~~~~~~~~~~~~~~~~~ 60 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE--------------------VIADLSTAEGRKQAIADVLAKCS 60 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS--------------------EECCTTSHHHHHHHHHHHHTTCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH--------------------HHHHhcCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999984321 245777776655443221
Q ss_pred -CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccC-CCCCCCCCC-------
Q 013602 174 -SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCK----NANPQPAIVWASSSSVYG-LNTKVPFSE------- 240 (439)
Q Consensus 174 -~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~----~~~~~~~~V~~SS~~v~g-~~~~~~~~e------- 240 (439)
.+|+++||||... ..+.......+|..+...+.+... +... ..+.++++..... .....+...
T Consensus 61 ~~id~lv~~Ag~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 136 (257)
T d1fjha_ 61 KGMDGLVLCAGLGP---QTKVLGNVVSVNYFGATELMDAFLPALKKGHQ-PAAVVISSVASAHLAFDKNPLALALEAGEE 136 (257)
T ss_dssp TCCSEEEECCCCCT---TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGGSSCGGGCTTHHHHHHTCH
T ss_pred CCCcEEEEcCCCCC---cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CcceeeeeccccchhhhhhhhhhhccCCcE
Confidence 4799999998643 235566778889888777666543 3332 2566666533211 111000000
Q ss_pred --------CCCCCCCCChHHHHHHHHHHHHHHHHhHh---CCcEEEEeeccccCCCCCCCChHHHHHHHHHcCCCCceee
Q 013602 241 --------KDRTDQPASLYAATKKAGEEIAHTYNHIY---GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFE 309 (439)
Q Consensus 241 --------~~~~~~p~~~Y~~sK~a~E~~~~~~~~~~---gi~~~ilrpg~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~ 309 (439)
......+...|+.+|.+.+.+++.++.++ |+++++|.||.|-.|.......-..+...+.+. ..++
T Consensus 137 ~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~-~~Pl-- 213 (257)
T d1fjha_ 137 AKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKF-VPPM-- 213 (257)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------C-CCST--
T ss_pred EEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHHHHHhc-CCCC--
Confidence 00000112469999999999999998874 899999999999766322100000111111111 0111
Q ss_pred cCCCCcceeeeeeHHHHHHHHHHHHhhchhccCCCCCccCCCCCcEEEecCC
Q 013602 310 SPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGNT 361 (439)
Q Consensus 310 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (439)
.-+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 214 --------gR~g~p~eva~~v~fL~S~~s~~----------itG~~i~vDGG 247 (257)
T d1fjha_ 214 --------GRRAEPSEMASVIAFLMSPAASY----------VHGAQIVIDGG 247 (257)
T ss_dssp --------TSCCCTHHHHHHHHHHTSGGGTT----------CCSCEEEESTT
T ss_pred --------CCCcCHHHHHHHHHHHhCchhCC----------ccCceEEeCCC
Confidence 12456799999999998655432 34589988766
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.36 E-value=1.7e-13 Score=119.98 Aligned_cols=84 Identities=19% Similarity=0.157 Sum_probs=68.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.+++|+|+||||+|+||+.+++.|+++|++|++++|+.++. ............+....+|++|.+++++++.++
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i-- 93 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA----QAAADSVNKRFKVNVTAAETADDASRAEAVKGA-- 93 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH----HHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTC--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHH----HHHHHHHHhccchhhhhhhcccHHHHHHHhcCc--
Confidence 37899999999999999999999999999999999944321 111222223356778899999999999999987
Q ss_pred cEEEEccccc
Q 013602 176 THVMHLAAQA 185 (439)
Q Consensus 176 d~Vi~~Ag~~ 185 (439)
|+||||||..
T Consensus 94 Dilin~Ag~g 103 (191)
T d1luaa1 94 HFVFTAGAIG 103 (191)
T ss_dssp SEEEECCCTT
T ss_pred CeeeecCccc
Confidence 9999999864
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.36 E-value=2.2e-06 Score=69.87 Aligned_cols=114 Identities=20% Similarity=0.147 Sum_probs=79.7
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|.|+||+|.+|+.++..|+.+|. ++++++.+. ... ...+............ ........+.++++ |+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~-----~~~-~a~Dl~~~~~~~~~~~-~~~~~~~~~~~~~a--Div 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-----TPG-VAADLSHIETRATVKG-YLGPEQLPDCLKGC--DVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-----HHH-HHHHHTTSSSSCEEEE-EESGGGHHHHHTTC--SEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc-----cch-hhHHHhhhhhhcCCCe-EEcCCChHHHhCCC--CEE
Confidence 699999999999999999999984 788888732 111 1112211111111121 22345566777877 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|.+||.. +....+..+.++.|......+++.++++++...|+.+|
T Consensus 73 Vitag~~--~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 73 VIPAGVP--RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp EECCSCC--CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EECCCcC--CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9999962 33345667889999999999999999998876777776
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.27 E-value=2e-06 Score=70.33 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=73.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
++.|+|.|.|+ |.+|..++..|+.+| .+|++++++..........................|. +.++++
T Consensus 3 ~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-------~~~~~a- 73 (146)
T d1ez4a1 3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-------SDCKDA- 73 (146)
T ss_dssp TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-------GGGTTC-
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-------HHhccc-
Confidence 35679999995 999999999999988 5899999843211100000000011123344555553 234556
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||.+||... ....+..+.+..|..-...+.+.+.+.++...+|++|
T Consensus 74 -divvitag~~~--~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 74 -DLVVITAGAPQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp -SEEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred -cEEEEeccccc--CCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 99999998632 2334455778899999999999999998876666666
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.17 E-value=1.1e-05 Score=64.55 Aligned_cols=71 Identities=14% Similarity=0.330 Sum_probs=55.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~V 178 (439)
|+|+|+|+ |.+|+.+++.|.++|++|++++.+. .... ......++.++.+|.+|++.++++ +++. |.+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~-------~~~~-~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a--~~v 69 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDK-------DICK-KASAEIDALVINGDCTKIKTLEDAGIEDA--DMY 69 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH-------HHHH-HHHHHCSSEEEESCTTSHHHHHHTTTTTC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCCh-------hhhh-hhhhhhhhhhccCcccchhhhhhcChhhh--hhh
Confidence 68999997 9999999999999999999999822 1111 111234788999999999999988 4555 777
Q ss_pred EEc
Q 013602 179 MHL 181 (439)
Q Consensus 179 i~~ 181 (439)
+-+
T Consensus 70 v~~ 72 (132)
T d1lssa_ 70 IAV 72 (132)
T ss_dssp EEC
T ss_pred ccc
Confidence 754
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.09 E-value=6.3e-06 Score=67.15 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=75.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhh-----hcCCeEEEEcccCCHHHHHHhhcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALL-----ERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
|+|.|+||+|.+|..++..|+.+| .++.+++++.+.. .......+.. ....+.....--.|. +.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~--~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSIN--KLEGLREDIYDALAGTRSDANIYVESDENL----RIIDE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHH--HHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhH--hhhcccccchhcccccccCCccccCCcchH----HHhcc
Confidence 579999999999999999999998 4899999832210 0011111111 112233221111122 34555
Q ss_pred cCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
. |+||-+||.. +....+..+.++.|..-...+.+.+.+.+.. .++.+|
T Consensus 75 a--DvVVitAG~~--~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~-~iivVt 122 (145)
T d1hyea1 75 S--DVVIITSGVP--RKEGMSRMDLAKTNAKIVGKYAKKIAEICDT-KIFVIT 122 (145)
T ss_dssp C--SEEEECCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCCC-EEEECS
T ss_pred c--eEEEEecccc--cCCCCChhhhhhhhHHHHHHHHHHHhccCCC-eEEEEc
Confidence 6 9999999963 3333456788999999999999999988864 666554
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=1.9e-05 Score=64.18 Aligned_cols=113 Identities=16% Similarity=0.086 Sum_probs=74.8
Q ss_pred CEEEEECCCChHHHHHHHHHH-hCC--CeEEEEECCCCCCChhHHHHHHHhhhcC-CeE-EEEcccCCHHHHHHhhcccC
Q 013602 100 ISVLVTGAAGFVGTHVSAALK-RRG--DGVLGLDNFNDYYDPSLKKARQALLERS-GIF-IVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~-~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~v~-~~~~Dl~d~~~~~~~~~~~~ 174 (439)
|+|.|+|++|.+|++++..|+ +.+ .++.+++... .......+..... ... ....+-.+. +.+++.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-----~~~g~a~Dl~h~~~~~~~~~~~~~~~~----~~~~~a- 70 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-----VTPGVAVDLSHIPTAVKIKGFSGEDAT----PALEGA- 70 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-----THHHHHHHHHTSCSSCEEEEECSSCCH----HHHTTC-
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-----cchhHHHHHHCCccccCCcEEEcCCCc----cccCCC-
Confidence 689999999999999999886 434 6888888621 1111111211111 111 111122232 245566
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||.+||.. +....+..+.+..|..-...+.+.+.+.++...+|.+|
T Consensus 71 -DvvvitaG~~--~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 71 -DVVLISAGVR--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp -SEEEECCSCC--CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred -CEEEECCCcc--CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 9999999963 33445667889999999999999999998776777777
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.98 E-value=2.4e-05 Score=63.85 Aligned_cols=117 Identities=22% Similarity=0.181 Sum_probs=78.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
..+++|.|+|+ |.+|+.++..|+.+|. ++.+++++.+............. .....+.+...|. +.+++.
T Consensus 4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l~da 75 (148)
T d1ldna1 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDCRDA 75 (148)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGTTTC
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHhccc
Confidence 45679999997 9999999999998874 89999983322111100001000 1122344444443 345566
Q ss_pred CccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 174 SFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||.+||.. ........+.+..|..-...+.+.+.++++...||++|
T Consensus 76 --Dvvvitag~~--~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 76 --DLVVICAGAN--QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp --SEEEECCSCC--CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred --eeEEEecccc--cccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 9999999863 23334556788899999999999999998876777776
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.96 E-value=3.8e-05 Score=62.19 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=73.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
++|.|.|+ |.+|+.++..|+.+|. ++.+++++.+.......................+| . +.+++. |+
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~----~~~~~a--di 71 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---Y----SDVKDC--DV 71 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---G----GGGTTC--SE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---H----HHhCCC--ce
Confidence 46888997 9999999999999874 89999987665433222111111111223322222 2 345556 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
||-+||.. .....+..+.+..|..-...+.+.+++.++...+|.+|
T Consensus 72 vvitag~~--~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 72 IVVTAGAN--RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp EEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred EEEecccc--cCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 99999863 33345567889999999999999999998776777766
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.94 E-value=4.2e-05 Score=61.77 Aligned_cols=112 Identities=18% Similarity=0.045 Sum_probs=76.5
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHh----hhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQAL----LERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
+|.|+||+|.+|..++..|+.+|. ++.+++..... ....-...+. ...........|.. .+++.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~--~~~~g~a~Dl~~~~~~~~~~~i~~~~~~-------~~~~a- 71 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKE--DDTVGQAADTNHGIAYDSNTRVRQGGYE-------DTAGS- 71 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGH--HHHHHHHHHHHHHHTTTCCCEEEECCGG-------GGTTC-
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcc--cccceeecchhhcccccCCceEeeCCHH-------Hhhhc-
Confidence 699999999999999999999984 78888752110 0000011111 11233444444432 24555
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||-+||.. +....+..+.++.|..-...+.+.+++.++...++.+|
T Consensus 72 -DiVvitaG~~--~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 72 -DVVVITAGIP--RQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp -SEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred -CEEEEecccc--cccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 9999999963 33445667899999999999999999998876777776
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=5.2e-05 Score=61.17 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=75.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
|+|.|.|+ |.+|+.++..|+.++ .++.+++++.+........................| . +.+++. |+
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~----~~~~~a--di 70 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---Y----ADLKGS--DV 70 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---G----GGGTTC--SE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---H----HHhcCC--CE
Confidence 57999996 999999999998887 589999874322111111111111112234444333 2 235566 99
Q ss_pred EEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 178 VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 178 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
||-+||.. +.......+.+..|..-...+.+.+.+.++...++++|
T Consensus 71 vvitag~~--~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 71 VIVAAGVP--QKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp EEECCCCC--CCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEecccc--cCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 99999863 23334556788899999999999999998876777666
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.91 E-value=3.4e-05 Score=64.66 Aligned_cols=74 Identities=24% Similarity=0.153 Sum_probs=54.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
.|+|+|.|| |++|+.+++.|.++|++|++++|+.+ ........-........+..+.....+.+... |.+
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~-------~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~ 71 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLE-------SAKKLSAGVQHSTPISLDVNDDAALDAEVAKH--DLV 71 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHH-------HHHHHHTTCTTEEEEECCTTCHHHHHHHHTTS--SEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChH-------HHHHHHhcccccccccccccchhhhHhhhhcc--cee
Confidence 589999996 99999999999999999999999322 11211112244555666777888888888776 777
Q ss_pred EEcc
Q 013602 179 MHLA 182 (439)
Q Consensus 179 i~~A 182 (439)
+...
T Consensus 72 i~~~ 75 (182)
T d1e5qa1 72 ISLI 75 (182)
T ss_dssp EECS
T ss_pred Eeec
Confidence 7554
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.85 E-value=5e-05 Score=61.50 Aligned_cols=115 Identities=16% Similarity=0.111 Sum_probs=75.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHH-hhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQA-LLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
|+|.|+|+ |.+|+.++..|+.+| .++.+++++.............. ........+... .|. +.+++. |
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~----~~~~da--d 71 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY----ADTANS--D 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG----GGGTTC--S
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCH----HHhcCC--e
Confidence 57999996 999999999999998 58999998654221111110000 011123333322 222 335666 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+||-+||.. .....+..+.+..|..-...+.+.+.+.++...++++|
T Consensus 72 vvvitag~~--~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 72 IVIITAGLP--RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp EEEECCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred EEEEEEecC--CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 999999863 22334456788999999999999999988775666666
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.82 E-value=7.7e-05 Score=59.51 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=56.0
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHh-hcccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKL-FDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~V 178 (439)
|+++|.|+ |-+|+.+++.|.++|++|++++. .+...+.....+...+.+|.++++.+.++ ++++ |.|
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~---------d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a--~~v 68 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDI---------NEEKVNAYASYATHAVIANATEENELLSLGIRNF--EYV 68 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEES---------CHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecC---------cHHHHHHHHHhCCcceeeecccchhhhccCCccc--cEE
Confidence 56889985 99999999999999999999997 22233334456778889999999999887 6666 877
Q ss_pred EEcc
Q 013602 179 MHLA 182 (439)
Q Consensus 179 i~~A 182 (439)
|-..
T Consensus 69 i~~~ 72 (134)
T d2hmva1 69 IVAI 72 (134)
T ss_dssp EECC
T ss_pred EEEc
Confidence 7544
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.77 E-value=6e-05 Score=63.70 Aligned_cols=105 Identities=25% Similarity=0.272 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeE--EEEcccCCHHHHHHhhcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIF--IVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~--~~~~Dl~d~~~~~~~~~~~~ 174 (439)
..|.+|||+||+|++|...++.....|++|++.+++. .+.+.....+.. +..-|-...+.+.+......
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~---------~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~G 98 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD---------EKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDG 98 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH---------HHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCH---------HHHHHHHhhhhhhhcccccccHHHHHHHHhhcCC
Confidence 3578999999999999999999999999999999821 122222222322 22223333455555556557
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
+|+||++.|.. .....++.++..| +++.+.....|+
T Consensus 99 vd~v~D~vG~~------------------~~~~~~~~l~~~G---~~v~~G~~~~~~ 134 (182)
T d1v3va2 99 YDCYFDNVGGE------------------FLNTVLSQMKDFG---KIAICGAISVYN 134 (182)
T ss_dssp EEEEEESSCHH------------------HHHHHGGGEEEEE---EEEECCCGGGTT
T ss_pred CceeEEecCch------------------hhhhhhhhccCCC---eEEeecceeecc
Confidence 89999998731 0223444444444 888877666554
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.70 E-value=0.00016 Score=59.25 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=76.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+.++|.|.|+ |.+|+.++..|+.++ .++++++.+.+.............. ........ .+ ...++++++.
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~-~~----~~~~~~~~~a-- 77 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR-AE----YSYEAALTGA-- 77 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE-EE----CSHHHHHTTC--
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEe-cc----CchhhhhcCC--
Confidence 4578999997 999999999888888 4888888755432211111111110 11111111 11 1124556666
Q ss_pred cEEEEcccccCccc---cccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 176 THVMHLAAQAGVRY---AMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~---~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||-+||...... ...+..+.+..|..-...+++.+++.++...|+.+|
T Consensus 78 diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99999998743221 122456788899999999999999999875666666
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.70 E-value=0.00015 Score=60.59 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=74.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHh
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-------GVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~ 169 (439)
..+|.||||+|.||++++..|+..+. .+.+++.... .........+.. .......+.. + ....+.
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~--~~~l~g~~mdl~d~a~~~~~~~~~--~--~~~~~~ 97 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERS--FQALEGVAMELEDSLYPLLREVSI--G--IDPYEV 97 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHTTTCTTEEEEEE--E--SCHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccc--cchhcchhhhhcccccccccCccc--c--ccchhh
Confidence 35899999999999999999987531 4444544111 111111111111 1122222221 1 124567
Q ss_pred hcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEec
Q 013602 170 FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWAS 225 (439)
Q Consensus 170 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~S 225 (439)
+++. |+||-.||. .+.......+.+..|..-...+.+++.+... ..+++.+|
T Consensus 98 ~~~a--DvVvi~ag~--~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 98 FEDV--DWALLIGAK--PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp TTTC--SEEEECCCC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCC--ceEEEeecc--CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 7777 999999987 3445566778999999999999999998653 33566666
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.68 E-value=0.00017 Score=58.26 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=73.8
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
+|.|+|+ |.+|++++..|+.+|. ++.+++++......................+... .+. +.+++. |+|
T Consensus 3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~--~~~----~~~~da--DvV 73 (143)
T d1llda1 3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDP----EICRDA--DMV 73 (143)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCG----GGGTTC--SEE
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC--CCH----HHhhCC--cEE
Confidence 6899996 9999999999999984 8999987332110000000000001122222222 122 234555 999
Q ss_pred EEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 179 MHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 179 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|-+||.. +....+..+.+..|..-...+.+.+++.++...+|.+|
T Consensus 74 VitaG~~--~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 74 VITAGPR--QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp EECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEecccc--cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 9999963 33345566889999999999999999998876777766
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.65 E-value=0.00013 Score=59.70 Aligned_cols=116 Identities=15% Similarity=0.009 Sum_probs=71.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC----e---EEEEECCCCCCChhHHHHHHH--hhhcCCeEEEEcccCCHHHHHHhh
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD----G---VLGLDNFNDYYDPSLKKARQA--LLERSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~----~---V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
++|.|+||+|++|++++..|+..+. . ..++.- ............+ .........+...- ...+.+
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 78 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI--PQAMKALEGVVMELEDCAFPLLAGLEATD----DPKVAF 78 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC--GGGHHHHHHHHHHHHTTTCTTEEEEEEES----CHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcc--ccchhhHcCchhhhhccccccccccccCC----chhhhc
Confidence 5899999999999999999998763 1 122221 0000111111111 11122343333332 234666
Q ss_pred cccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCC-CCeEEEec
Q 013602 171 DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP-QPAIVWAS 225 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~V~~S 225 (439)
++. |+||-+||.. +....+..+.+..|..-...+.+.+.+..+ ...|+.+|
T Consensus 79 ~~a--dvViitaG~~--~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 79 KDA--DYALLVGAAP--RKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp TTC--SEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccc--cEEEeecCcC--CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 777 9999999973 334456678899999999999999988643 33566666
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=8.1e-05 Score=62.77 Aligned_cols=76 Identities=26% Similarity=0.316 Sum_probs=52.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~~ 174 (439)
.|.+|||+||+|.+|..+++.+...|.+|++++++. .+.+...+.+...+ .|..+.+ .+.+......
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~---------~~~~~l~~~Ga~~v-i~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD---------AKREMLSRLGVEYV-GDSRSVDFADEILELTDGYG 94 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH---------HHHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTCC
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeeccc---------cccccccccccccc-ccCCccCHHHHHHHHhCCCC
Confidence 567999999999999999999999999999999721 12223333343332 3445543 3444444456
Q ss_pred ccEEEEccc
Q 013602 175 FTHVMHLAA 183 (439)
Q Consensus 175 ~d~Vi~~Ag 183 (439)
+|++|++.|
T Consensus 95 ~d~v~d~~g 103 (183)
T d1pqwa_ 95 VDVVLNSLA 103 (183)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeccc
Confidence 799999987
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.59 E-value=3e-05 Score=65.28 Aligned_cols=101 Identities=20% Similarity=0.198 Sum_probs=61.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH-HHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM-ALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~~~~~~~~~~~ 175 (439)
..+.+|||+||+|++|...++-+...|.+|++.+++.++ ........... ++ |-.+. +...+....-++
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k------~~~~~~lGa~~--vi--~~~~~~~~~~~~~~~~gv 99 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE------HDYLRVLGAKE--VL--AREDVMAERIRPLDKQRW 99 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC------HHHHHHTTCSE--EE--ECC---------CCSCCE
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH------HHHHHhcccce--ee--ecchhHHHHHHHhhccCc
Confidence 356789999999999999999999999999999985442 11222222211 12 22221 223333344478
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
|+||++.|-.. ....++.++..| |+|.++...
T Consensus 100 D~vid~vgg~~------------------~~~~l~~l~~~G---riv~~G~~~ 131 (176)
T d1xa0a2 100 AAAVDPVGGRT------------------LATVLSRMRYGG---AVAVSGLTG 131 (176)
T ss_dssp EEEEECSTTTT------------------HHHHHHTEEEEE---EEEECSCCS
T ss_pred CEEEEcCCchh------------------HHHHHHHhCCCc---eEEEeeccc
Confidence 99999987421 123444444444 999888754
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.58 E-value=0.00022 Score=58.54 Aligned_cols=116 Identities=13% Similarity=0.132 Sum_probs=76.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
..++|.|.|+ |.+|..++..|+.+|. ++.+++++.+............. ...........|. +.+++.
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~-------~~~~~a- 89 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY-------SVTANS- 89 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG-------GGGTTC-
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch-------hhcccc-
Confidence 4568999996 9999999999999985 89999873321111100000100 0011222222222 234555
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||..||.. .....+..+.+..|..-...+.+.+++.++...+|++|
T Consensus 90 -diVVitAg~~--~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 90 -KIVVVTAGVR--QQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp -SEEEECCSCC--CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred -cEEEEecCCc--cccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999999963 23335566788899999999999999998876788777
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.55 E-value=7.1e-05 Score=61.60 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=74.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCCCCChhHHHHHHHhh----hcC-CeEEEEcccCCHHHHHHh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFNDYYDPSLKKARQALL----ERS-GIFIVEGDINDMALLKKL 169 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~----~~~-~v~~~~~Dl~d~~~~~~~ 169 (439)
+...+|.|+|+ |.+|..++..|+.+|. ++++++++.+.. .....+.. ... .......|. +.
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a----~g~alDl~~~~~~~~~~~~~~~~d~-------~~ 84 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKL----RGEALDLQHGSLFLSTPKIVFGKDY-------NV 84 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHH----HHHHHHHHHTTTTCSCCEEEEESSG-------GG
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhh----hccHHHHhCcchhcCCCeEEeccch-------hh
Confidence 45568999996 9999999999999984 899998733211 11111111 111 222222232 23
Q ss_pred hcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 170 FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 170 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+++. |+||..||... ....+..+.++.|..-...+.+.+++.++...++.+|
T Consensus 85 ~~~a--divvitag~~~--~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 85 SANS--KLVIITAGARM--VSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp GTTE--EEEEECCSCCC--CTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred hccc--cEEEEeccccc--CCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 4455 99999998632 2334455678889999999999999988877788777
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.00011 Score=61.60 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=51.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHH---HhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLK---KLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~---~~~~~~~ 174 (439)
.+.+|||+||+|.+|...++.+...|.+|++++++. .+.+...+-+...+ .|..+.+..+ +......
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~---------~~~~~~~~~Ga~~v-i~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE---------EGQKIVLQNGAHEV-FNHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH---------HHHHHHHHTTCSEE-EETTSTTHHHHHHHHHCTTC
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccc---------cccccccccCcccc-cccccccHHHHhhhhhccCC
Confidence 567999999999999999999999999999999721 11222222233222 3666554433 4444446
Q ss_pred ccEEEEccc
Q 013602 175 FTHVMHLAA 183 (439)
Q Consensus 175 ~d~Vi~~Ag 183 (439)
+|+|+++.|
T Consensus 98 ~d~v~d~~g 106 (174)
T d1yb5a2 98 IDIIIEMLA 106 (174)
T ss_dssp EEEEEESCH
T ss_pred ceEEeeccc
Confidence 899999886
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.53 E-value=0.00021 Score=57.57 Aligned_cols=115 Identities=18% Similarity=0.107 Sum_probs=73.6
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
|+|.|.|+ |.+|..++..|+.+| .++.+++++.+.............. .......... .|. +.+++. |
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~--~d~----~~~~~a--d 71 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADY----SLLKGS--E 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCG----GGGTTC--S
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccC--CCH----HHhccc--c
Confidence 68999996 999999999999888 4799998743221110000000000 1111222221 122 245555 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+||-.||.. +.+..+..+.+..|..-...+.+.+++.++...++.+|
T Consensus 72 iVvitag~~--~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 72 IIVVTAGLA--RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp EEEECCCCC--CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred EEEEecccc--CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 999999862 33344567888999999999999999988775666666
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.52 E-value=2.5e-05 Score=66.33 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=31.7
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
|||.|+||+|.+|++|++.|++.|++|++.+|+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 6799999999999999999999999999999944
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.46 E-value=0.00038 Score=56.25 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=72.0
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
|+|.|+|+ |.+|..++..|+.+| .++++++++.+.............. ..........| . +.+++. |
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d---~----~~l~~a--d 71 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---W----AALADA--D 71 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---G----GGGTTC--S
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC---H----HHhccc--c
Confidence 68999995 999999999999887 4899888743321111101111101 11223333333 2 234555 9
Q ss_pred EEEEcccccCccc--cccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 177 HVMHLAAQAGVRY--AMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~--~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+||-+||...... ...+..+.++.|..-...+.+.+++.++...||.+|
T Consensus 72 iVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 9999998632111 112234567889999999999999998876777776
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.40 E-value=0.00021 Score=57.58 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=68.0
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEE-EcccCCHHHHHHhhcccCcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIV-EGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~-~~Dl~d~~~~~~~~~~~~~d 176 (439)
++|.|+|+ |.+|..++..|+.++ .++.+++.+.+............. .......+. ..|.. .+++. |
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-------~~~~a--d 71 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-------DTANS--D 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-------GGTTC--S
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-------HhcCC--C
Confidence 58999996 999999999998887 488888875542111111110000 011122222 22222 23444 9
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+||-+||... ....+..+.+..|..-...+.+.+.+.++...++.+|
T Consensus 72 vvvitag~~~--~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 72 VIVVTSGAPR--KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp EEEECCSCC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred EEEEeeeccC--CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 9999998632 2234445677889999999999999988776666665
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00049 Score=57.88 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.++|+|+|.|+ |+.|+.++..|.+.|. ++++++|+.+..+..... ..+....-.......|+.+.+.+.+.+...
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF-AQRVNENTDCVVTVTDLADQQAFAEALASA-- 91 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHH-HHHHHHHSSCEEEEEETTCHHHHHHHHHTC--
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHH-HHHHHhhcCcceEeeecccccchhhhhccc--
Confidence 67899999995 9999999999999996 788899866543322211 112223334556678999999998888877
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+|||+...
T Consensus 92 diiIN~Tp~ 100 (182)
T d1vi2a1 92 DILTNGTKV 100 (182)
T ss_dssp SEEEECSST
T ss_pred ceeccccCC
Confidence 999999754
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.33 E-value=0.00064 Score=55.48 Aligned_cols=116 Identities=16% Similarity=0.063 Sum_probs=69.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhh
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD-------GVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLF 170 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~ 170 (439)
++|.|+||+|.+|++++..|+..+- .+++.+.+.. .........+.. .......+.. .+ ...+.+
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~--~~~~~~l~~~~~~~~~~~~~~~~~--~~--~~~~~~ 77 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM--MGVLDGVLMELQDCALPLLKDVIA--TD--KEEIAF 77 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHHTCCTTEEEEEE--ES--CHHHHT
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc--hhhhhhhhhhhccccccccccccc--Cc--cccccc
Confidence 5899999999999999999987542 3444443111 111111111111 1122222222 11 134566
Q ss_pred cccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCC-eEEEec
Q 013602 171 DVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP-AIVWAS 225 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~-~~V~~S 225 (439)
++. |+||-+||.. +....+..+.++.|..-...+.+.+.+..+.. .+|.+|
T Consensus 78 ~~~--dvVVitag~~--~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 78 KDL--DVAILVGSMP--RRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp TTC--SEEEECCSCC--CCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred CCc--eEEEEecccC--CCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 777 9999999863 33334555778999999999999887754332 455555
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.32 E-value=0.00068 Score=54.95 Aligned_cols=117 Identities=11% Similarity=0.139 Sum_probs=74.0
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHH-hhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQA-LLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+|-|.|+ |.+|+.++..|..++ .++.+++++.+............ ........+...| +. +.+++. |+
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~----~~~~~a--dv 74 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY----DDLAGA--DV 74 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG----GGGTTC--SE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc----cccCCC--cE
Confidence 58999995 999999998888777 48888887554221111111111 1111233333222 22 334455 99
Q ss_pred EEEcccccCcc-cc--ccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 178 VMHLAAQAGVR-YA--MQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 178 Vi~~Ag~~~~~-~~--~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
||-+||..... .+ ..+..+.+..|..-...+.+.+++..+...++++|
T Consensus 75 vvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 75 VIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp EEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99999964322 11 12355778999999999999999998876677766
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.30 E-value=0.0018 Score=53.45 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=49.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCe-EEEEccc--CCHHHHHHhhcc-
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGI-FIVEGDI--NDMALLKKLFDV- 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl--~d~~~~~~~~~~- 172 (439)
..+.+|+|+| .|.||...++.+...|.+|++++++. .+.+...+-+. ..+..|- .+.+.+.+.+..
T Consensus 25 ~~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~---------~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~ 94 (170)
T d1e3ja2 25 QLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSP---------RRLEVAKNCGADVTLVVDPAKEEESSIIERIRSA 94 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEc-ccccchhhHhhHhhhcccccccchHH---------HHHHHHHHcCCcEEEeccccccccchhhhhhhcc
Confidence 3567899998 69999999999999999999999821 12222222122 2222232 344444444432
Q ss_pred --cCccEEEEcccc
Q 013602 173 --VSFTHVMHLAAQ 184 (439)
Q Consensus 173 --~~~d~Vi~~Ag~ 184 (439)
..+|+||.++|.
T Consensus 95 ~g~g~D~vid~~g~ 108 (170)
T d1e3ja2 95 IGDLPNVTIDCSGN 108 (170)
T ss_dssp SSSCCSEEEECSCC
T ss_pred cccCCceeeecCCC
Confidence 257999999974
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.00061 Score=54.95 Aligned_cols=97 Identities=12% Similarity=-0.021 Sum_probs=55.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCC----CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRG----DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
||+|.|.||||++|+.+++.|+++. .+++.+.++....... ....-.....++.+.+. ++++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~---------~~~~~~~~~~~~~~~~~----~~~~- 66 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAP---------SFGGTTGTLQDAFDLEA----LKAL- 66 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCC---------GGGTCCCBCEETTCHHH----HHTC-
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccc---------cccCCceeeecccchhh----hhcC-
Confidence 4689999999999999999888764 2666666533321111 00111112223344433 3445
Q ss_pred ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 013602 175 FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSS 228 (439)
Q Consensus 175 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~ 228 (439)
|++|.+++.. -...+.+.+.+.+....+|=.||..
T Consensus 67 -DivF~a~~~~------------------~s~~~~~~~~~~g~~~~VID~Ss~f 101 (146)
T d1t4ba1 67 -DIIVTCQGGD------------------YTNEIYPKLRESGWQGYWIDAASSL 101 (146)
T ss_dssp -SEEEECSCHH------------------HHHHHHHHHHHTTCCCEEEECSSTT
T ss_pred -cEEEEecCch------------------HHHHhhHHHHhcCCCeecccCCccc
Confidence 9999888531 1445666677777522355555544
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.00098 Score=50.99 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=56.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
+.+.+|.|.| .|.+|+-++....+.|++|++++.+.+... ..-.-+++.+|..|.+.+.++...+.+|
T Consensus 9 ~~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~PA-----------~~va~~~i~~~~~d~~~l~~~~~~~~~D 76 (111)
T d1kjqa2 9 PAATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAPA-----------MHVAHRSHVINMLDGDALRRVVELEKPH 76 (111)
T ss_dssp TTCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCGG-----------GGGSSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCch-----------hhcCCeEEECCCCCHHHHHHHHHhhCCc
Confidence 4567899999 699999999999999999999997443111 1113467889999999999999776668
Q ss_pred EEE
Q 013602 177 HVM 179 (439)
Q Consensus 177 ~Vi 179 (439)
+|-
T Consensus 77 viT 79 (111)
T d1kjqa2 77 YIV 79 (111)
T ss_dssp EEE
T ss_pred eEE
Confidence 875
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.00038 Score=60.52 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=54.1
Q ss_pred cCCCCEEEEECC----------------CChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcc
Q 013602 96 ARNGISVLVTGA----------------AGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159 (439)
Q Consensus 96 ~~~~~~VlItGa----------------tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D 159 (439)
.+.||+||||+| ||..|.+||+++.++|++|+++.-.... ....++..+..
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~------------~~p~~~~~~~~- 69 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL------------PTPPFVKRVDV- 69 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC------------CCCTTEEEEEC-
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhccccc------------Cccccccccee-
Confidence 367888888875 7899999999999999999999863221 11235555543
Q ss_pred cCCHHHHH----HhhcccCccEEEEcccccCcc
Q 013602 160 INDMALLK----KLFDVVSFTHVMHLAAQAGVR 188 (439)
Q Consensus 160 l~d~~~~~----~~~~~~~~d~Vi~~Ag~~~~~ 188 (439)
.+.+++. +.+... |++|++|++..+.
T Consensus 70 -~t~~~m~~~~~~~~~~~--D~~i~aAAvsDf~ 99 (223)
T d1u7za_ 70 -MTALEMEAAVNASVQQQ--NIFIGCAAVADYR 99 (223)
T ss_dssp -CSHHHHHHHHHHHGGGC--SEEEECCBCCSEE
T ss_pred -hhhHHHHHHHHhhhccc--eeEeeeechhhhh
Confidence 4444443 334455 9999999987653
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.17 E-value=0.00026 Score=58.98 Aligned_cols=75 Identities=21% Similarity=0.192 Sum_probs=49.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+.+|||+||+|.+|...++.+...|.+|++.+++.++. ...+. -+...+ .|..+.. .+.-....+|
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~------~~~~~---lGa~~~-i~~~~~~--~~~~~~~g~D 93 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL------ALPLA---LGAEEA-ATYAEVP--ERAKAWGGLD 93 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS------HHHHH---TTCSEE-EEGGGHH--HHHHHTTSEE
T ss_pred CCCCEEEEEeccccchhhhhhhhccccccccccccccccc------ccccc---ccccee-eehhhhh--hhhhcccccc
Confidence 3678999999999999999999999999999999843321 11111 122221 2443332 2332333569
Q ss_pred EEEEccc
Q 013602 177 HVMHLAA 183 (439)
Q Consensus 177 ~Vi~~Ag 183 (439)
+||++.|
T Consensus 94 ~v~d~~G 100 (171)
T d1iz0a2 94 LVLEVRG 100 (171)
T ss_dssp EEEECSC
T ss_pred ccccccc
Confidence 9999876
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00028 Score=59.03 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=52.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhcccC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~~ 174 (439)
.+.+|||+||+|.+|..+++.+...|.+|++.+++. .+.+...+-+...+ .|..+++ .+.++-.+..
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~---------~k~~~~~~lGa~~v-i~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA---------QKAQSALKAGAWQV-INYREEDLVERLKEITGGKK 97 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH---------HHHHHHHHHTCSEE-EETTTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccch---------HHHHHHHhcCCeEE-EECCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999999999998822 11112112222222 3555544 3444444556
Q ss_pred ccEEEEcccc
Q 013602 175 FTHVMHLAAQ 184 (439)
Q Consensus 175 ~d~Vi~~Ag~ 184 (439)
+|+|+++.+.
T Consensus 98 ~d~v~d~~g~ 107 (179)
T d1qora2 98 VRVVYDSVGR 107 (179)
T ss_dssp EEEEEECSCG
T ss_pred eEEEEeCccH
Confidence 7999999874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.15 E-value=0.00095 Score=55.89 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=49.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCe-EEEEcccCCHHH----HHHhh
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGI-FIVEGDINDMAL----LKKLF 170 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~----~~~~~ 170 (439)
..|.+|||+|+ |.||...++.+...|+ +|++++++. .+.+...+-+. .++.-.=.+... +.+..
T Consensus 27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~---------~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 27 FAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSP---------NRLKLAEEIGADLTLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCH---------HHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCEEEEECC-Cccchhheeccccccccccccccccc---------ccccccccccceEEEeccccchHHHHHHHHHhh
Confidence 35789999996 9999999999999997 799998822 12222222222 233222223322 33333
Q ss_pred cccCccEEEEcccc
Q 013602 171 DVVSFTHVMHLAAQ 184 (439)
Q Consensus 171 ~~~~~d~Vi~~Ag~ 184 (439)
....+|+||.+.|.
T Consensus 97 ~~~g~Dvvid~vG~ 110 (182)
T d1vj0a2 97 HGRGADFILEATGD 110 (182)
T ss_dssp TTSCEEEEEECSSC
T ss_pred CCCCceEEeecCCc
Confidence 34467999999875
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.07 E-value=0.00088 Score=54.31 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=51.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHH-HHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALL-KKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~-~~~~~~~~~ 175 (439)
...++|.|.||.|.+|..+++.|.+.||+|.+.+|+... ..........+.+...++.....+ .++....+.
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~ 79 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------VAESILANADVVIVSVPINLTLETIERLKPYLTE 79 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------GHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-------ccchhhhhccccccccchhhheeeeecccccccC
Confidence 567899999999999999999999999999999995431 111222333444444444433332 223222222
Q ss_pred -cEEEEcccc
Q 013602 176 -THVMHLAAQ 184 (439)
Q Consensus 176 -d~Vi~~Ag~ 184 (439)
.++++++..
T Consensus 80 ~~iiiD~~Sv 89 (152)
T d2pv7a2 80 NMLLADLTSV 89 (152)
T ss_dssp TSEEEECCSC
T ss_pred CceEEEeccc
Confidence 467777653
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.03 E-value=0.0036 Score=47.85 Aligned_cols=95 Identities=11% Similarity=0.049 Sum_probs=65.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
.++|+|||.| .|-+|..-++.|++.|++|++.+.... +.........++.+..-+..+.+ +.++ +
T Consensus 10 l~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~d-----l~~~--~ 74 (113)
T d1pjqa1 10 LRDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFI-------PQFTVWANEGMLTLVEGPFDETL-----LDSC--W 74 (113)
T ss_dssp CBTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCC-------HHHHHHHTTTSCEEEESSCCGGG-----GTTC--S
T ss_pred eCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccCC-------hHHHHHHhcCCceeeccCCCHHH-----hCCC--c
Confidence 6789999999 599999999999999999999986332 23333445567888877665432 3344 6
Q ss_pred EEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 013602 177 HVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASS 226 (439)
Q Consensus 177 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS 226 (439)
.|+.+.+. .+ + ...+.+.|++.+ ..|++..
T Consensus 75 lv~~at~d---------~~----~----n~~i~~~a~~~~---ilVNv~D 104 (113)
T d1pjqa1 75 LAIAATDD---------DT----V----NQRVSDAAESRR---IFCNVVD 104 (113)
T ss_dssp EEEECCSC---------HH----H----HHHHHHHHHHTT---CEEEETT
T ss_pred EEeecCCC---------HH----H----HHHHHHHHHHcC---CEEEeCC
Confidence 67654321 11 1 235677788776 6788764
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.0069 Score=48.77 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=55.8
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhh-cccCccEEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLF-DVVSFTHVM 179 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~-~~~~~d~Vi 179 (439)
+|+|.|. |-+|..+++.|.++|++|++++.+. .......+.....++.++.+|.+|++.++++- +++ |.||
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~-----~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a--~~vi 76 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLP-----EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRC--RAIL 76 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCC-----HHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTC--SEEE
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccc-----hhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccC--CEEE
Confidence 6999996 8999999999999999999998732 22222233334568999999999999887764 334 7777
Q ss_pred Ecc
Q 013602 180 HLA 182 (439)
Q Consensus 180 ~~A 182 (439)
-+.
T Consensus 77 ~~~ 79 (153)
T d1id1a_ 77 ALS 79 (153)
T ss_dssp ECS
T ss_pred Ecc
Confidence 554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.97 E-value=0.0014 Score=54.60 Aligned_cols=97 Identities=22% Similarity=0.212 Sum_probs=60.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCe-EEEEcccCC---HHHHHHhhc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGI-FIVEGDIND---MALLKKLFD 171 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d---~~~~~~~~~ 171 (439)
..+.+|+|.|+ |.||...++.+...|+ +|++++++. .+.+...+-+. .++ |..+ .+.+.+...
T Consensus 26 ~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~---------~r~~~a~~lGa~~~i--~~~~~~~~~~v~~~t~ 93 (174)
T d1jqba2 26 EMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRP---------ICVEAAKFYGATDIL--NYKNGHIEDQVMKLTN 93 (174)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCH---------HHHHHHHHHTCSEEE--CGGGSCHHHHHHHHTT
T ss_pred CCCCEEEEEcC-Ccchhhhhhhhhcccccccccccchh---------hhHHHHHhhCccccc--cccchhHHHHHHHHhh
Confidence 35678999986 9999999999999997 788888721 12222112222 222 3333 334555555
Q ss_pred ccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 172 VVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
+..+|+||.++|... .....++.+++.+ +++.++
T Consensus 94 g~G~D~vid~~g~~~-----------------~~~~a~~~~~~~G---~iv~~G 127 (174)
T d1jqba2 94 GKGVDRVIMAGGGSE-----------------TLSQAVKMVKPGG---IISNIN 127 (174)
T ss_dssp TSCEEEEEECSSCTT-----------------HHHHHHHHEEEEE---EEEECC
T ss_pred ccCcceEEEccCCHH-----------------HHHHHHHHHhcCC---EEEEEe
Confidence 556899999998521 1234455556544 888776
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00037 Score=49.56 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=32.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
++.+|||+||+|++|...++.+...|++|++.+++.
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~ 66 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE 66 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence 567899999999999999999999999999998833
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.0077 Score=49.46 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=51.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCe-EEEEcccCCHHHHHHhhc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGI-FIVEGDINDMALLKKLFD--- 171 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~~~~~~~--- 171 (439)
..+.+|+|.|+ |.+|...++.+..+|. +|++.+++. .+.+...+-+. .++..+-.+.....+.+.
T Consensus 25 ~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~---------~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 25 TLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSA---------TRLSKAKEIGADLVLQISKESPQEIARKVEGQL 94 (171)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCH---------HHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred CCCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCH---------HHHHHHHHhCCcccccccccccccccccccccC
Confidence 35678999986 9999999999999998 799988721 12222222233 333444445555544443
Q ss_pred ccCccEEEEcccc
Q 013602 172 VVSFTHVMHLAAQ 184 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~ 184 (439)
...+|+||.+.|.
T Consensus 95 g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 95 GCKPEVTIECTGA 107 (171)
T ss_dssp TSCCSEEEECSCC
T ss_pred CCCceEEEeccCC
Confidence 2367999999874
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.71 E-value=0.0026 Score=51.96 Aligned_cols=72 Identities=28% Similarity=0.263 Sum_probs=50.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
+++++|||.|+ |.+|..+++.|.++|. +|++..|..+ +.. .....-+...+ +.+++.+.+.++
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~-------ka~-~l~~~~~~~~~-----~~~~~~~~l~~~-- 85 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYE-------RAV-ELARDLGGEAV-----RFDELVDHLARS-- 85 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHH-------HHH-HHHHHHTCEEC-----CGGGHHHHHHTC--
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHH-------HHH-HHHHhhhcccc-----cchhHHHHhccC--
Confidence 67899999996 9999999999999997 6888888221 111 11111133332 345677777777
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||++.+.
T Consensus 86 Divi~atss 94 (159)
T d1gpja2 86 DVVVSATAA 94 (159)
T ss_dssp SEEEECCSS
T ss_pred CEEEEecCC
Confidence 999999864
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.00037 Score=58.38 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 177 (439)
.+.+|||+||+|++|...++.....|++|++++++.++ ....+.+ +...+ .|..+. ...+.+.+...|.
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k------~~~~~~l---Gad~v-i~~~~~-~~~~~l~~~~~~~ 99 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST------HEYLKSL---GASRV-LPRDEF-AESRPLEKQVWAG 99 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG------HHHHHHH---TEEEE-EEGGGS-SSCCSSCCCCEEE
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH------HHHHHhh---ccccc-cccccH-HHHHHHHhhcCCe
Confidence 34589999999999999999999999999999983321 1112222 22222 232222 1223334445688
Q ss_pred EEEccc
Q 013602 178 VMHLAA 183 (439)
Q Consensus 178 Vi~~Ag 183 (439)
+|++.|
T Consensus 100 vvD~Vg 105 (177)
T d1o89a2 100 AIDTVG 105 (177)
T ss_dssp EEESSC
T ss_pred eEEEcc
Confidence 998876
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.0014 Score=54.06 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=51.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..|.+|+|.|+ |.||...++.+...|++|++++++.+ +....+.+ +... ..|..+.+......+.+ |
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~------~~~~a~~l---Gad~-~i~~~~~~~~~~~~~~~--D 95 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEA------KREAAKAL---GADE-VVNSRNADEMAAHLKSF--D 95 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGG------GHHHHHHH---TCSE-EEETTCHHHHHTTTTCE--E
T ss_pred CCCCEEEEecc-chHHHHHHHHhhcccccchhhccchh------HHHHHhcc---CCcE-EEECchhhHHHHhcCCC--c
Confidence 46789999996 99999999999999999999987332 11111222 2221 24666776666555555 9
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
++|.+.|.
T Consensus 96 ~vid~~g~ 103 (168)
T d1uufa2 96 FILNTVAA 103 (168)
T ss_dssp EEEECCSS
T ss_pred eeeeeeec
Confidence 99999874
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.68 E-value=0.0015 Score=52.51 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=27.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCC---eEEEEEC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGD---GVLGLDN 131 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~---~V~~~~r 131 (439)
++|.|.||||++|..+++.|.+++| ++..+..
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s 37 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS 37 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence 6899999999999999999987764 6776654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.68 E-value=0.0015 Score=53.99 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=49.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCe-EEEEcccCCHHHHHHhhc---
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGI-FIVEGDINDMALLKKLFD--- 171 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~~~~~~~--- 171 (439)
..+.+|+|+|++|.+|..+++.+...| .+|++.+++. .+.+...+-+. .++ |..+.+..++..+
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~---------~~~~~~~~~Ga~~~i--~~~~~~~~~~~~~~~~ 94 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE---------EAVEAAKRAGADYVI--NASMQDPLAEIRRITE 94 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH---------HHHHHHHHHTCSEEE--ETTTSCHHHHHHHHTT
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccch---------hhHHHHHHcCCceee--ccCCcCHHHHHHHHhh
Confidence 356799999999999999999999888 4888888721 12222222222 333 3344433333333
Q ss_pred ccCccEEEEcccc
Q 013602 172 VVSFTHVMHLAAQ 184 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~ 184 (439)
.-.+|++|.++|.
T Consensus 95 ~~~~d~vid~~g~ 107 (170)
T d1jvba2 95 SKGVDAVIDLNNS 107 (170)
T ss_dssp TSCEEEEEESCCC
T ss_pred cccchhhhccccc
Confidence 3357999999874
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.58 E-value=0.0045 Score=51.84 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=28.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEE-EEC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLG-LDN 131 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~-~~r 131 (439)
++.+|||+||+|++|...++.+...|.++++ .++
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~ 64 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICG 64 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEES
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccc
Confidence 3478999999999999999999889986555 444
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.56 E-value=0.00014 Score=60.44 Aligned_cols=37 Identities=38% Similarity=0.434 Sum_probs=33.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
.+.+|||+||+|++|...++.....|++|++.+++.+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~ 59 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE 59 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHH
Confidence 4557999999999999999999999999999999554
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.0011 Score=54.85 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=48.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC-CHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN-DMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~~~~~~~~~~~ 175 (439)
..+.+|+|.|+ |.+|...++.+...|.+|++++++.++. ...+.+... .++ |.. +.+..++..+. +
T Consensus 26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~------~~a~~lGa~--~~i--~~~~~~~~~~~~~~~--~ 92 (168)
T d1piwa2 26 GPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKR------EDAMKMGAD--HYI--ATLEEGDWGEKYFDT--F 92 (168)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTH------HHHHHHTCS--EEE--EGGGTSCHHHHSCSC--E
T ss_pred CCCCEEEEECC-CCcchhHHHHhhhccccccccccchhHH------HHhhccCCc--EEe--eccchHHHHHhhhcc--c
Confidence 45789999996 9999999998888999999999854421 111112111 222 222 33344444444 4
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+++.+.+.
T Consensus 93 d~vi~~~~~ 101 (168)
T d1piwa2 93 DLIVVCASS 101 (168)
T ss_dssp EEEEECCSC
T ss_pred ceEEEEecC
Confidence 999998764
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.48 E-value=0.0076 Score=48.23 Aligned_cols=97 Identities=11% Similarity=-0.031 Sum_probs=55.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC----CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG----DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
|+|.|.||||++|..+++.|+++. .++..++.+...... ....+-.....+..+.+. ++++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~---------~~~~~~~~~~~~~~~~~~----~~~~-- 65 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPA---------PNFGKDAGMLHDAFDIES----LKQL-- 65 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBC---------CCSSSCCCBCEETTCHHH----HTTC--
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccc---------cccCCcceeeecccchhh----hccc--
Confidence 579999999999999999888653 356655543221111 000111111112233333 3555
Q ss_pred cEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 013602 176 THVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSV 229 (439)
Q Consensus 176 d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v 229 (439)
|+||.+.... -+..+.+.+.+.+....+|=.||..-
T Consensus 66 DvvF~alp~~------------------~s~~~~~~l~~~g~~~~VIDlSsdfR 101 (147)
T d1mb4a1 66 DAVITCQGGS------------------YTEKVYPALRQAGWKGYWIDAASTLR 101 (147)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTCCSEEEESSSTTT
T ss_pred cEEEEecCch------------------HHHHHhHHHHHcCCceEEEeCCcccc
Confidence 9999887421 14466777777775335777777654
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.44 E-value=0.0055 Score=52.01 Aligned_cols=32 Identities=31% Similarity=0.633 Sum_probs=29.5
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
|+|.|.| .|++|..++..|++.|++|++.|.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 6799997 7999999999999999999999973
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.43 E-value=0.012 Score=48.61 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=29.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
|+|.|.|+ |-+|..++..|.++|++|++.+|
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r 32 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDI 32 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEEC
Confidence 78999996 99999999999999999999999
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.016 Score=42.21 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=48.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..+|+|+|.|. |..|..+++.|.++|++|++.+........ ... ...+.+..... +.+ .+.++ |
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-------~~~-~~~~~~~~~~~-~~~----~~~~~--d 66 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGL-------DKL-PEAVERHTGSL-NDE----WLMAA--D 66 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTG-------GGS-CTTSCEEESBC-CHH----HHHHC--S
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhH-------HHH-hhccceeeccc-chh----hhccC--C
Confidence 57899999996 999999999999999999999975432211 111 23444444443 222 23344 8
Q ss_pred EEEEcccc
Q 013602 177 HVMHLAAQ 184 (439)
Q Consensus 177 ~Vi~~Ag~ 184 (439)
.||-.-|+
T Consensus 67 ~vi~SPGi 74 (93)
T d2jfga1 67 LIVASPGI 74 (93)
T ss_dssp EEEECTTS
T ss_pred EEEECCCC
Confidence 88887765
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.33 E-value=0.0049 Score=51.28 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=27.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhC-CCeEEEEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRR-GDGVLGLD 130 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~ 130 (439)
|++|.|.||||++|.++++.|.++ ..++..+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 578999999999999999999998 45776554
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.23 E-value=0.0078 Score=46.19 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=41.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC---ChhHHHHHHHhhhcCCeEEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY---DPSLKKARQALLERSGIFIV 156 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~v~~~ 156 (439)
.++|+|.|| |++|-++|..|.+.|.+|+++.|...-. ++.......+.+...++.++
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~ 81 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIV 81 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECC-chHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEE
Confidence 478999995 9999999999999999999999865432 33333333444444555554
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.23 E-value=0.014 Score=47.49 Aligned_cols=31 Identities=29% Similarity=0.697 Sum_probs=29.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
|+|.|.| .|.+|..+++.|.+.|++|++.+|
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~ 31 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSR 31 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEEC
Confidence 6799998 599999999999999999999998
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.0029 Score=51.62 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=31.7
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
|+|+|.|+ |.+|..++..|++.|++|.+++|+..
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 68999997 99999999999999999999999664
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.16 E-value=0.012 Score=48.52 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=45.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEE-ECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHH---HHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGL-DNFNDYYDPSLKKARQALLERSGIFIVEGDINDMAL---LKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---~~~~~~~ 172 (439)
..+.+|+|.|+ |.||...++.+...|.+++++ +++ ..+....+... -.+++ |..+.+. +.++..+
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~------~~k~~~a~~~G--a~~~i--~~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIV------ESRLELAKQLG--ATHVI--NSKTQDPVAAIKEITDG 95 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESC------HHHHHHHHHHT--CSEEE--ETTTSCHHHHHHHHTTS
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccH------HHHHHHHHHcC--CeEEE--eCCCcCHHHHHHHHcCC
Confidence 45779999997 999999999998889866554 541 11111112221 22343 4444333 3333333
Q ss_pred cCccEEEEcccc
Q 013602 173 VSFTHVMHLAAQ 184 (439)
Q Consensus 173 ~~~d~Vi~~Ag~ 184 (439)
.+|+||.+.|.
T Consensus 96 -g~D~vid~~G~ 106 (174)
T d1f8fa2 96 -GVNFALESTGS 106 (174)
T ss_dssp -CEEEEEECSCC
T ss_pred -CCcEEEEcCCc
Confidence 67999999874
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.011 Score=48.63 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.++|+|+|.| +|+.+++++..|.+.|.+|+++.|
T Consensus 16 ~~~k~vlIlG-aGGaarai~~al~~~g~~i~I~nR 49 (170)
T d1nyta1 16 RPGLRILLIG-AGGASRGVLLPLLSLDCAVTITNR 49 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCEEEEEC-CcHHHHHHHHHhcccceEEEeccc
Confidence 5789999999 599999999999999999999999
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.14 E-value=0.039 Score=44.65 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=62.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh---------hcCCeEEEEcccCCHHHHHHh
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---------ERSGIFIVEGDINDMALLKKL 169 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---------~~~~v~~~~~Dl~d~~~~~~~ 169 (439)
+++|.|.| .|-+|+.+++.|+++||+|++.+|+..+ ........ ......++..-+.+.+.++.+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~-----~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v 74 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSA-----VDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGL 74 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHH-----HHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhh-----hhhhhhhhccccchhhhhccccCeeeecccchhhHHHH
Confidence 46899998 7999999999999999999999983321 11111000 012334555556666766666
Q ss_pred hccc-------C-ccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q 013602 170 FDVV-------S-FTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVW 223 (439)
Q Consensus 170 ~~~~-------~-~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~ 223 (439)
+... . =+++|++... +|+ -+..+.+.+++.+. +|+-
T Consensus 75 ~~~~~~~~~~l~~g~iiid~st~--------~p~--------~~~~~~~~~~~~gi--~~~d 118 (162)
T d3cuma2 75 YLDDDGLLAHIAPGTLVLECSTI--------APT--------SARKIHAAARERGL--AMLD 118 (162)
T ss_dssp HHSTTCHHHHSCTTCEEEECSCC--------CHH--------HHHHHHHHHHHTTC--EEEE
T ss_pred HhccccccccCCCCCEEEECCCC--------CHH--------HHHHHHHHHHHCCC--cEEe
Confidence 5432 2 2567766543 122 24567777777775 6664
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.12 E-value=0.0083 Score=48.93 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=30.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..+.+|+|.|+ |.||...++.+...|.+|+++++
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~ 59 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDI 59 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcCCccceecc
Confidence 35779999986 99999999999999999999998
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.08 E-value=0.012 Score=49.22 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=30.8
Q ss_pred CCCEEEE-ECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 98 NGISVLV-TGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 98 ~~~~VlI-tGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
.|.+|+| +||+|.+|...++.....|.+|+++.|..+
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~ 65 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP 65 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEeccc
Confidence 4556666 699999999999999999999999998443
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.02 E-value=0.033 Score=45.72 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=48.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC--CHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN--DMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d~~~~~~~~~~~ 173 (439)
..|.+|+|.|+ |.||...++.+...|+ +|++.+++.. +....+... ...++...-. ..+.+.+.....
T Consensus 27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~------r~~~a~~~G--a~~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 27 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGE------KFPKAKALG--ATDCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG------GHHHHHHTT--CSEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchH------HHHHHHHhC--CCcccCCccchhhhhhhHhhhhcC
Confidence 45679999985 9999999999999998 5666666221 111122211 1223322221 233444444455
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|++|.++|.
T Consensus 98 G~d~vie~~G~ 108 (174)
T d1e3ia2 98 GVDYSLDCAGT 108 (174)
T ss_dssp CBSEEEESSCC
T ss_pred CCcEEEEeccc
Confidence 78999999985
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.97 E-value=0.022 Score=43.93 Aligned_cols=60 Identities=22% Similarity=0.358 Sum_probs=41.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC----ChhHHHHHHHhhhcCCeEEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY----DPSLKKARQALLERSGIFIVE 157 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~v~~~~ 157 (439)
..+++|+|.| .|++|.++|..|.++|.+|+++.+..... ++.......+.+...+++++.
T Consensus 28 ~~~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~ 91 (123)
T d1nhpa2 28 PEVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIAT 91 (123)
T ss_dssp TTCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEE
T ss_pred cCCCEEEEEC-ChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEe
Confidence 4568999999 59999999999999999999999865432 222223333334444555544
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.92 E-value=0.021 Score=43.96 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=42.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCC----hhHHHHHHHhhhcCCeEEEE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD----PSLKKARQALLERSGIFIVE 157 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~v~~~~ 157 (439)
..++|+|.| .|++|-++|..|.++|.+|+++.+...... +.......+.+...+++++.
T Consensus 29 ~~~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~ 91 (121)
T d1d7ya2 29 PQSRLLIVG-GGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRF 91 (121)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEE
T ss_pred cCCeEEEEC-cchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEe
Confidence 458999999 599999999999999999999999775332 22222233344455666543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.92 E-value=0.018 Score=43.96 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=31.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
++++|.| .|++|-++|..|.+.|.+|+++.|...
T Consensus 23 ~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIG-GGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEEC-CCccceeeeeeecccccEEEEEEecce
Confidence 7899999 599999999999999999999998664
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.89 E-value=0.035 Score=45.66 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=50.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEE-cccCC-HHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVE-GDIND-MALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~Dl~d-~~~~~~~~~~~ 173 (439)
..|.+|+|+|+ |++|...++.+...| .+|++++++.+ +....+.... ..++. -|-.+ .+.+.+.....
T Consensus 28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~------kl~~Ak~~GA--~~~in~~~~~~~~~~~~~~~~g~ 98 (176)
T d1d1ta2 28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKD------KFEKAMAVGA--TECISPKDSTKPISEVLSEMTGN 98 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG------GHHHHHHHTC--SEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHH------HHHHHHhcCC--cEEECccccchHHHHHHHHhccc
Confidence 46779999995 999999999999999 48999998332 1112222211 12221 12221 34455555555
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|++|.+.|.
T Consensus 99 G~d~vi~~~g~ 109 (176)
T d1d1ta2 99 NVGYTFEVIGH 109 (176)
T ss_dssp CCCEEEECSCC
T ss_pred cceEEEEeCCc
Confidence 67999999875
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.86 E-value=0.018 Score=47.33 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=48.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh-hcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL-ERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.++|+|+|.| +|+.++.++..|.+.+.+|+++.|+.+ ..+...+.. ....+.....|-.+ .. ..
T Consensus 16 ~~~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~-----~a~~l~~~~~~~~~~~~~~~~~~~-------~~--~~ 80 (171)
T d1p77a1 16 RPNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFS-----KTKELAERFQPYGNIQAVSMDSIP-------LQ--TY 80 (171)
T ss_dssp CTTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHH-----HHHHHHHHHGGGSCEEEEEGGGCC-------CS--CC
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHH-----HHHHHHHHHhhccccchhhhcccc-------cc--cc
Confidence 5789999999 599999999999998899999999432 111111222 22344555444221 22 44
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+|||+...
T Consensus 81 diiIN~tp~ 89 (171)
T d1p77a1 81 DLVINATSA 89 (171)
T ss_dssp SEEEECCCC
T ss_pred ceeeecccc
Confidence 999999764
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.016 Score=44.87 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=40.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC---ChhHHHHHHHhhhcCCeEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY---DPSLKKARQALLERSGIFIV 156 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~v~~~ 156 (439)
|+++|.| .|+||-+++..|.+.|.+|+++.|...-. ++.......+.+.+.+++++
T Consensus 23 k~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~ 81 (125)
T d3grsa2 23 GRSVIVG-AGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVL 81 (125)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEc-CCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEE
Confidence 7899999 59999999999999999999999976432 33333333444445555554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.71 E-value=0.0079 Score=48.93 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=44.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVM 179 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi 179 (439)
|+|-|.| .|.+|+.+++.|++.|++|++.+|+. ...+.....+... .++..+++++. |+||
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~---------~~~~~~~~~~~~~-------~~~~~e~~~~~--d~ii 61 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNP---------EAIADVIAAGAET-------ASTAKAIAEQC--DVII 61 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCH---------HHHHHHHHTTCEE-------CSSHHHHHHHC--SEEE
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCc---------chhHHHHHhhhhh-------cccHHHHHhCC--CeEE
Confidence 5799998 69999999999999999999999822 1222222223332 12345666666 8888
Q ss_pred Ecc
Q 013602 180 HLA 182 (439)
Q Consensus 180 ~~A 182 (439)
-+-
T Consensus 62 ~~v 64 (161)
T d1vpda2 62 TML 64 (161)
T ss_dssp ECC
T ss_pred EEc
Confidence 765
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.71 E-value=0.025 Score=43.24 Aligned_cols=57 Identities=26% Similarity=0.438 Sum_probs=41.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCC---CChhHHHHHHHhhhcCCeEEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDY---YDPSLKKARQALLERSGIFIV 156 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~v~~~ 156 (439)
.++++|.| .|+||-++|..|.+.|.+|+++.+...- .++.......+.+.+.+++++
T Consensus 22 p~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~ 81 (119)
T d3lada2 22 PGKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKIL 81 (119)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEE
T ss_pred CCeEEEEC-CChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceee
Confidence 37899999 5999999999999999999999986642 233333334444444555544
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.02 Score=44.10 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=31.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
++++|.| .|+||-++|..|.+.|.+|+++.+...
T Consensus 24 ~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 24 KRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CeEEEEC-CCchHHHHHHHHHhhCcceeEEEeccc
Confidence 6899999 599999999999999999999998553
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.67 E-value=0.0073 Score=49.85 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=48.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECCCCCCChhHHHHHHHhhhcCCeE-EEE-cccCC-HHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIF-IVE-GDIND-MALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~~~-~Dl~d-~~~~~~~~~~ 172 (439)
..|.+|+|.|+ |++|...+..+...| .+|++.+++.+ +.+ .....+.. .+. -|-.+ .+.+.+....
T Consensus 27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~-----k~~----~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (176)
T d2jhfa2 27 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKD-----KFA----KAKEVGATECVNPQDYKKPIQEVLTEMSN 96 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG-----GHH----HHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHH-----HHH----HHHHhCCeeEEecCCchhHHHHHHHHHhc
Confidence 46789999998 789999999999998 48888887332 111 11122222 221 12222 2334444444
Q ss_pred cCccEEEEcccc
Q 013602 173 VSFTHVMHLAAQ 184 (439)
Q Consensus 173 ~~~d~Vi~~Ag~ 184 (439)
-.+|++|.+.|.
T Consensus 97 ~G~D~vid~~G~ 108 (176)
T d2jhfa2 97 GGVDFSFEVIGR 108 (176)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCCEEEecCCc
Confidence 467999999875
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.67 E-value=0.014 Score=45.53 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=27.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLD 130 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~ 130 (439)
|+|.|.|++|-.|+.+++.+.++|+++++..
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~i 31 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKV 31 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEE
Confidence 5799999999999999999999999887653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.66 E-value=0.02 Score=44.12 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=39.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC--CCChhHHHHHHHhhhcCCeEEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND--YYDPSLKKARQALLERSGIFIVE 157 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~v~~~~ 157 (439)
++++|.| .|+||-++|..|.+.|.+|+++.|+.- ..++.......+.+...+++++.
T Consensus 21 ~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~ 79 (122)
T d1h6va2 21 GKTLVVG-ASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIR 79 (122)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEE
T ss_pred CeEEEEC-CCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEE
Confidence 5799999 599999999999999999999998531 22222333333344445555543
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.64 E-value=0.025 Score=46.56 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=30.2
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
.+|-|.| -|-+|..+++.|++.|++|++.+|+.
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~ 35 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTV 35 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 4789999 69999999999999999999999954
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.57 E-value=0.028 Score=46.44 Aligned_cols=73 Identities=21% Similarity=0.167 Sum_probs=47.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhc----C--CeEEEEcccCCHHHHHHhhccc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLER----S--GIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~----~--~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
|+|.|.| +|-.|.+++..|++.|++|++.+|..+ +...+.... + .......++.-.+++.+++++.
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~~V~l~~r~~~-------~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a 72 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGNEVRIWGTEFD-------TEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENA 72 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCCEEEEECCGGG-------HHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEeccc-------HHHHHHHhhhhhhhhhcchhccccccccccHHHHHhcc
Confidence 6899999 599999999999999999999998221 111111111 1 1111122233356678888888
Q ss_pred CccEEEEcc
Q 013602 174 SFTHVMHLA 182 (439)
Q Consensus 174 ~~d~Vi~~A 182 (439)
|+||...
T Consensus 73 --d~Ii~av 79 (180)
T d1txga2 73 --EVVLLGV 79 (180)
T ss_dssp --SEEEECS
T ss_pred --chhhccc
Confidence 9988754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.51 E-value=0.027 Score=46.06 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=47.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcC-CeEEEEcccCCHHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERS-GIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.+.+|+|.|+ |.+|...++.+...|. .|++.+++. .+.+...+- ..+++.-+=.+.+.+.+......+
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~---------~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKE---------EKLKLAERLGADHVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSH---------HHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchh---------HHHHHHhhcccceeecCcccHHHHHHHhhCCCCc
Confidence 5679999985 9999999999988886 666666611 122222222 233443322223344444444468
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+||.++|.
T Consensus 102 d~vid~~g~ 110 (172)
T d1h2ba2 102 NVAMDFVGS 110 (172)
T ss_dssp EEEEESSCC
T ss_pred eEEEEecCc
Confidence 999999984
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.021 Score=43.49 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=31.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
++|+|.| .|++|-+++..|.+.|.+|+++.|...
T Consensus 22 ~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 22 ERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEC-CChhhHHHHHHhhccccEEEEEeecch
Confidence 6899999 599999999999999999999998664
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.48 E-value=0.043 Score=45.94 Aligned_cols=77 Identities=25% Similarity=0.213 Sum_probs=50.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCH---HHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDM---ALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~ 172 (439)
..|.+|+|.|+ |.+|...+..+...|. +|++.++ .+.+.+...+-+...+. |-.+. +.+.++...
T Consensus 24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~---------~~~rl~~a~~~Ga~~~~-~~~~~~~~~~i~~~t~g 92 (195)
T d1kola2 24 GPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDL---------NPARLAHAKAQGFEIAD-LSLDTPLHEQIAALLGE 92 (195)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEES---------CHHHHHHHHHTTCEEEE-TTSSSCHHHHHHHHHSS
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecc---------cchhhHhhhhccccEEE-eCCCcCHHHHHHHHhCC
Confidence 46789999985 9999888888878887 7778876 12233333333444432 32322 345555566
Q ss_pred cCccEEEEcccc
Q 013602 173 VSFTHVMHLAAQ 184 (439)
Q Consensus 173 ~~~d~Vi~~Ag~ 184 (439)
...|++|.+.|.
T Consensus 93 ~g~D~vid~vG~ 104 (195)
T d1kola2 93 PEVDCAVDAVGF 104 (195)
T ss_dssp SCEEEEEECCCT
T ss_pred CCcEEEEECccc
Confidence 678999999884
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.45 E-value=0.0063 Score=47.52 Aligned_cols=68 Identities=24% Similarity=0.187 Sum_probs=49.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhh-cccCccEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLF-DVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~-~~~~~d~V 178 (439)
|+|+|.|. |-+|..+++.| +|++|++++.+.+ ..+.....++.++.+|.+|++.++++- +++ +.+
T Consensus 1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~---------~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A--~~v 66 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDEN---------VRKKVLRSGANFVHGDPTRVSDLEKANVRGA--RAV 66 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTT---------HHHHHHHTTCEEEESCTTSHHHHHHTTCTTC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchH---------HHHHHHhcCccccccccCCHHHHHHhhhhcC--cEE
Confidence 57899995 88999999999 4677888876332 122223468999999999999888853 333 777
Q ss_pred EEc
Q 013602 179 MHL 181 (439)
Q Consensus 179 i~~ 181 (439)
|-+
T Consensus 67 i~~ 69 (129)
T d2fy8a1 67 IVN 69 (129)
T ss_dssp EEC
T ss_pred EEe
Confidence 644
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.40 E-value=0.027 Score=43.25 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=40.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC--ChhHHHHHHHhhhcCCeEEEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY--DPSLKKARQALLERSGIFIVE 157 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~v~~~~ 157 (439)
.++++|.| .|++|-++|..|.++|.+|+++.|...-. ++.......+.+...+++++.
T Consensus 32 ~~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~ 91 (122)
T d1xhca2 32 SGEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFL 91 (122)
T ss_dssp HSEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEEC
T ss_pred CCcEEEEC-CcHHHHHHHHHhhcccceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEe
Confidence 47899999 59999999999999999999999865432 222223333334445666543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.37 E-value=0.024 Score=46.43 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=45.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcc--cCCHHHHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD--INDMALLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D--l~d~~~~~~~~~~~ 173 (439)
..|.+|+|.|+ |++|...++.+...|. .|++.+++. ...+ ..+.+.. ..++..+ -.+.+...+.....
T Consensus 27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~-----~k~~-~ak~lGa--~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINK-----DKFA-RAKEFGA--TECINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG-----GGHH-HHHHHTC--SEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccH-----HHHH-HHHHhCC--cEEEeCCchhhHHHHHHHHHcCC
Confidence 45779999997 7899999999999996 455555522 1111 1222221 2222221 12223333333334
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
.+|+||.+.|.
T Consensus 98 g~D~vid~~G~ 108 (176)
T d2fzwa2 98 GVDYSFECIGN 108 (176)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEeeecCCC
Confidence 67999999874
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.28 E-value=0.018 Score=47.82 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=44.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~ 161 (439)
..||+|.|.| .|-||+.+++.|..-|.+|++.+|+.............+......+..+.+-++
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~ 103 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLN 103 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCS
T ss_pred ccCceEEEec-cccccccceeeeeccccccccccccccccceeeeechhhhhhccchhhcccccc
Confidence 6889999999 699999999999999999999999664332211111122333445555555443
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.20 E-value=0.013 Score=48.05 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=29.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEEC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDN 131 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r 131 (439)
.+++|+|.|+ |+.|++++..|.+.|. +|.++.|
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR 49 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYAR 49 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecc
Confidence 5678999995 9999999999999996 8999998
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.15 E-value=0.024 Score=43.06 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=39.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC---ChhHHHHHHHhhhcCCeEEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY---DPSLKKARQALLERSGIFIV 156 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~v~~~ 156 (439)
.++++|.| .|++|-++|..|.+.|.+|+++.+...-. ++...+...+.+...+++++
T Consensus 21 p~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~ 80 (115)
T d1lvla2 21 PQHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALH 80 (115)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEEC-CCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEE
Confidence 37899999 59999999999999999999998865432 22223333333444455544
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.14 E-value=0.014 Score=47.39 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=55.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
.-+|+|.| .|-.|..-++.....|..|+++|.+.+ .. ...+......+++. ..+.+.+++.++++ |+|
T Consensus 32 pa~V~ViG-aGvaG~~A~~~A~~lGA~V~~~D~~~~-----~l-~~l~~~~~~~~~~~---~~~~~~l~~~~~~a--Div 99 (168)
T d1pjca1 32 PGKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVE-----RL-SYLETLFGSRVELL---YSNSAEIETAVAEA--DLL 99 (168)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHH-----HH-HHHHHHHGGGSEEE---ECCHHHHHHHHHTC--SEE
T ss_pred CcEEEEEC-CChHHHHHHHHHhhCCCEEEEEeCcHH-----HH-HHHHHhhcccceee---hhhhhhHHHhhccC--cEE
Confidence 35899999 499999999999999999999998221 11 11122222334443 45788899999988 999
Q ss_pred EEcccccC
Q 013602 179 MHLAAQAG 186 (439)
Q Consensus 179 i~~Ag~~~ 186 (439)
|.++-+.+
T Consensus 100 I~aalipG 107 (168)
T d1pjca1 100 IGAVLVPG 107 (168)
T ss_dssp EECCCCTT
T ss_pred EEeeecCC
Confidence 99987643
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.13 E-value=0.011 Score=49.19 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC-CeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r 131 (439)
.+..+|.|.||||++|..+++.|.++- .++..+.-
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S 38 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTA 38 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEEC
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEec
Confidence 456789999999999999999999885 46666654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.13 E-value=0.14 Score=37.21 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=46.7
Q ss_pred CCCCEEEEECCCChHH-HHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVG-THVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG-~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
...|+|.+.| -|++| +.||+.|.++|+.|.+.|+..+ +.... +...++.+...+-. + .+++.
T Consensus 6 ~~~~~ihfiG-igG~GMs~LA~~L~~~G~~VsGSD~~~~-------~~~~~-L~~~Gi~v~~g~~~--~----~i~~~-- 68 (96)
T d1p3da1 6 RRVQQIHFIG-IGGAGMSGIAEILLNEGYQISGSDIADG-------VVTQR-LAQAGAKIYIGHAE--E----HIEGA-- 68 (96)
T ss_dssp TTCCEEEEET-TTSTTHHHHHHHHHHHTCEEEEEESCCS-------HHHHH-HHHTTCEEEESCCG--G----GGTTC--
T ss_pred hhCCEEEEEE-ECHHHHHHHHHHHHhCCCEEEEEeCCCC-------hhhhH-HHHCCCeEEECCcc--c----cCCCC--
Confidence 3568899998 46677 6779999999999999998432 12222 22357776654432 2 12333
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|.||...|+
T Consensus 69 d~vV~S~AI 77 (96)
T d1p3da1 69 SVVVVSSAI 77 (96)
T ss_dssp SEEEECTTS
T ss_pred CEEEECCCc
Confidence 888888775
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.00 E-value=0.051 Score=41.39 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=33.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
..+++|+|.| .|+||-++|..|.+.|.+|.++.|...
T Consensus 20 ~~~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 20 EPGSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CCCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhcchhheEeeccch
Confidence 3468999999 599999999999999999999998654
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.022 Score=50.88 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=23.4
Q ss_pred CCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 107 AAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 107 atG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
.||-.|.++|+.|..+|++|+.+.+.
T Consensus 44 SSGk~G~alA~~~~~~Ga~V~li~g~ 69 (290)
T d1p9oa_ 44 SSGRRGATSAEAFLAAGYGVLFLYRA 69 (290)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CchHHHHHHHHHHHHcCCEEEEEecC
Confidence 46889999999999999999999764
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.045 Score=44.15 Aligned_cols=69 Identities=20% Similarity=0.134 Sum_probs=49.1
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.+.||+|.|.| .|.||+.+|+.|...|.+|++.+.+ ..+..+. ...+.++. .+++++...
T Consensus 21 ~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~d-------p~~al~A--~~dG~~v~--------~~~~a~~~a-- 80 (163)
T d1li4a1 21 MIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEID-------PINALQA--AMEGYEVT--------TMDEACQEG-- 80 (163)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC-------HHHHHHH--HHTTCEEC--------CHHHHTTTC--
T ss_pred eecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecc-------cchhHHh--hcCceEee--------ehhhhhhhc--
Confidence 37899999999 8999999999999999999999882 1111111 12233333 245666666
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|++|-+.|.
T Consensus 81 divvtaTGn 89 (163)
T d1li4a1 81 NIFVTTTGC 89 (163)
T ss_dssp SEEEECSSC
T ss_pred cEEEecCCC
Confidence 888877764
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.81 E-value=0.0073 Score=48.86 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=22.2
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD 124 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~ 124 (439)
+|.|.||||++|.++++.|.++.+
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCS
T ss_pred EEEEECCCcHHHHHHHHHHHcCCC
Confidence 799999999999999999988864
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.81 E-value=0.08 Score=42.08 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=29.4
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
|+|.|.| .|-+|+.+++.|+++|++|++.++..
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~ 33 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGR 33 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCch
Confidence 5789998 69999999999999999999988743
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.80 E-value=0.045 Score=42.66 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=33.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDY 135 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~ 135 (439)
..++|+|.| .|++|-++|..|.+.|.+|+++.+....
T Consensus 34 ~~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~~~ 70 (133)
T d1q1ra2 34 ADNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAARV 70 (133)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred cCCEEEEEC-CchHHHHHHHHHHhhCcceeeeeecccc
Confidence 468999999 5999999999999999999999986653
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.76 E-value=0.032 Score=46.37 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=31.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
+-++|.|.|+ |.+|..++..++..|++|++.+++.
T Consensus 3 ~I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3468999996 9999999999999999999999954
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.65 E-value=0.059 Score=43.46 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=29.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.+.+|+|.|+ |.||...++.+...|++|++.++
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~ 59 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDI 59 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECS
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCC
Confidence 5679999975 99999999999999999999987
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.025 Score=45.86 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..||+|+|.|.+.-+|+-++..|.++|++|+.+..
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~ 69 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHR 69 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred cccceEEEEeccccccHHHHHHHHHhhcccccccc
Confidence 68999999999999999999999999999988865
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.026 Score=46.99 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
..+++|.|.| .|.||+.+++.|..-|.+|+..++..
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIEN 77 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred ccceEEEEee-cccchhhhhhhcccccceEeeccccc
Confidence 6789999998 79999999999999999999999843
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.47 E-value=0.038 Score=42.46 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=32.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDY 135 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~ 135 (439)
.++++|.| .|+||-++|..|.+.|.+|+++.|....
T Consensus 25 p~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 25 PKKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp CSEEEESC-CSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 36899999 5999999999999999999999986643
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.44 E-value=0.055 Score=41.69 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=31.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
.++++|.| .|+||-++|..|.+.|.+|+++.+...
T Consensus 26 p~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 37899999 599999999999999999999988553
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.33 E-value=0.074 Score=43.06 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=28.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC--eEEEEEC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDN 131 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r 131 (439)
||+|+|.| .|.+|..+++.|.+.|+ +|++.++
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~ 34 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDI 34 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 46899998 59999999999999996 7888887
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.23 E-value=0.014 Score=48.88 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
+.+++|.|.| +|-.|.+++..|.+.|++|++.+|+
T Consensus 5 ~~m~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~ 39 (189)
T d1n1ea2 5 LYLNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMN 39 (189)
T ss_dssp CCEEEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred ceeceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEec
Confidence 5667899999 5999999999999999999999983
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.22 E-value=0.011 Score=48.80 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
.++|+|+|.| +|+.++.++..|.+.| +|+++.|+.
T Consensus 16 ~~~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~ 50 (177)
T d1nvta1 16 VKDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTV 50 (177)
T ss_dssp CCSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred cCCCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhh
Confidence 6889999999 6999999999998777 999999943
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=94.19 E-value=0.2 Score=40.76 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=29.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
|+|-|.| .|-+|..+++.|++.|++|++.+|
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr 32 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNR 32 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEEC
Confidence 5688998 899999999999999999999998
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.19 E-value=0.053 Score=44.37 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=48.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCeE-EEEcccCC--HHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIF-IVEGDIND--MALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~~~~Dl~d--~~~~~~~~~~ 172 (439)
..|.+|+|.|+ |++|...++.+...|. +|++.+++.+ +.+...+-+.. ++...-.| .+.+.+....
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~---------kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKD---------KFPKAIELGATECLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG---------GHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHH---------HHHHHHHcCCcEEEcCCCchhHHHHHHHHhcC
Confidence 46789999996 9999999999999996 6888877322 11111122322 33221122 2334444444
Q ss_pred cCccEEEEcccc
Q 013602 173 VSFTHVMHLAAQ 184 (439)
Q Consensus 173 ~~~d~Vi~~Ag~ 184 (439)
-..|++|.++|.
T Consensus 96 ~G~d~vid~~g~ 107 (174)
T d1p0fa2 96 GGVDYAVECAGR 107 (174)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCcEEEEcCCC
Confidence 467999999874
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.19 E-value=0.019 Score=45.92 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
+++|+|||+|| |.+|..-++.|++.|.+|++++-
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 68999999997 99999999999999999999974
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.018 Score=48.22 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=32.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
.-++|.|.|+ |.+|..++..++..|++|++.+++.+
T Consensus 3 ~IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 3 IVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred eeEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChH
Confidence 4479999996 99999999999999999999999553
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.042 Score=44.77 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=33.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
..||+|.|.|.+.-+|+-++..|+++|+.|+.+..
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~ 71 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHS 71 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred cccceEEEEecCCccchHHHHHHHhccCceEEEec
Confidence 68999999999999999999999999999999876
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.11 Score=41.28 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=29.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHhC--CCeEEEEECCC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRR--GDGVLGLDNFN 133 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~--G~~V~~~~r~~ 133 (439)
||+|.|.|+||-||..+..-+.+. .++|.++.=..
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~ 37 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK 37 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 578999999999999999988876 47888886433
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.97 E-value=0.063 Score=43.74 Aligned_cols=83 Identities=20% Similarity=0.105 Sum_probs=52.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFT 176 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 176 (439)
..||+|+|.|-+.-+|+-++..|+++|+.|+.+........ . +...........-.+.-...+.+.+..... |
T Consensus 27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~lk~~~~~a--D 99 (171)
T d1edza1 27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKF-T----RGESLKLNKHHVEDLGEYSEDLLKKCSLDS--D 99 (171)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEE-E----SCCCSSCCCCEEEEEEECCHHHHHHHHHHC--S
T ss_pred CCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccccccc-c----cccceeeeeeccccccccchhHHhhccccC--C
Confidence 78999999999999999999999999999997765210000 0 000000001111111113466788888777 9
Q ss_pred EEEEcccccC
Q 013602 177 HVMHLAAQAG 186 (439)
Q Consensus 177 ~Vi~~Ag~~~ 186 (439)
+||..+|...
T Consensus 100 IvIsavG~p~ 109 (171)
T d1edza1 100 VVITGVPSEN 109 (171)
T ss_dssp EEEECCCCTT
T ss_pred EEEEccCCCc
Confidence 9998887643
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=93.81 E-value=0.048 Score=44.78 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=27.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCC-CeEEEEECC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNF 132 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r~ 132 (439)
|++|.|.||||++|..+++.|.++- .++..+..+
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~ 35 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSR 35 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeecc
Confidence 4689999999999999999999875 466666543
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=93.79 E-value=0.094 Score=42.72 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=66.4
Q ss_pred CCEEEEECCCChHHHH--HHHHHHhC----CCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhc
Q 013602 99 GISVLVTGAAGFVGTH--VSAALKRR----GDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFD 171 (439)
Q Consensus 99 ~~~VlItGatG~IG~~--l~~~L~~~----G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~ 171 (439)
.|+|.|.|| |.+|.. ++..|+.. +.++++.+++.++.+.......... .......+.. ....+++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~-----~td~~eaL~ 75 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK-----TMNLDDVII 75 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE-----ESCHHHHHT
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEE-----eCChhhccc
Confidence 368999996 888865 44445543 4699999984432111111111100 0112222221 123566778
Q ss_pred ccCccEEEEcccccCccccccChh------------------------HHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 172 VVSFTHVMHLAAQAGVRYAMQNPN------------------------SYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 172 ~~~~d~Vi~~Ag~~~~~~~~~~~~------------------------~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
++ |+||+.++.........+.. ....-|+.-...+++.+++..+...+|++|
T Consensus 76 da--d~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T 151 (171)
T d1obba1 76 DA--DFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA 151 (171)
T ss_dssp TC--SEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CC--CeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence 77 99999987643221100000 001247777888999999988776788777
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=93.73 E-value=0.036 Score=46.49 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
..|++|.|.| .|-||+.+++.|..-|.+|++.++.
T Consensus 41 l~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~ 75 (197)
T d1j4aa1 41 VRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIF 75 (197)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred ccCCeEEEec-ccccchhHHHhHhhhcccccccCcc
Confidence 6789999999 7999999999999999999999873
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=93.71 E-value=0.087 Score=44.13 Aligned_cols=35 Identities=31% Similarity=0.515 Sum_probs=32.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
.++|++|+|-| -|-+|+++++.|.+.|.+|++.+.
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~ 58 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADT 58 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecc
Confidence 37899999999 799999999999999999998876
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.53 E-value=0.048 Score=46.86 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
..|+|+|.| .|..|..+|..|.++|++|.++.|.
T Consensus 5 ~~~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLG-SGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 457899999 4999999999999999999999984
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.072 Score=43.81 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=34.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDY 135 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~ 135 (439)
..+|+|+|.| .|..|...|..|+++||+|+++.+....
T Consensus 41 ~~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 41 VQKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCCcEEEEEC-ccHHHHHHHHHHHhhccceEEEeccCcc
Confidence 5678999999 5999999999999999999999997643
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=93.26 E-value=0.28 Score=39.60 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=60.7
Q ss_pred CEEEEECCCChHHHH-HHHHHHhC-----CCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhcc
Q 013602 100 ISVLVTGAAGFVGTH-VSAALKRR-----GDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDV 172 (439)
Q Consensus 100 ~~VlItGatG~IG~~-l~~~L~~~-----G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~ 172 (439)
.+|.|.||.+ +|.. ++..|+.+ +.+|++.|.+.++.+.......... ........... ...++++++
T Consensus 4 ~KI~iIGaGs-v~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~eal~~ 77 (167)
T d1u8xx1 4 FSIVIAGGGS-TFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAFTD 77 (167)
T ss_dssp EEEEEECTTS-SSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHHSS
T ss_pred ceEEEECCCh-hhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-----CChhhccCC
Confidence 4788999844 4543 44455543 2489999884432111111111100 01122222211 125667777
Q ss_pred cCccEEEEcccccCccccccChhHHHH--------------------HHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 173 VSFTHVMHLAAQAGVRYAMQNPNSYVH--------------------SNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 173 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~--------------------~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
. |+||+.||...... ...++.+. -|+.-...+++..++..+...++++|
T Consensus 78 A--D~Vvitag~~~~~g--~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~T 146 (167)
T d1u8xx1 78 V--DFVMAHIRVGKYAM--RALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYS 146 (167)
T ss_dssp C--SEEEECCCTTHHHH--HHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred C--CEEEECCCcCCCCc--eeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 7 99999998743221 11112222 24445667777778888776777777
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.24 E-value=0.19 Score=40.76 Aligned_cols=121 Identities=13% Similarity=0.130 Sum_probs=65.9
Q ss_pred CEEEEECC-CChHHHHHHHHHHhCC----CeEEEEECCCCCCChhHHHHHH-HhhhcCCeEEEEcccCCHHHHHHhhccc
Q 013602 100 ISVLVTGA-AGFVGTHVSAALKRRG----DGVLGLDNFNDYYDPSLKKARQ-ALLERSGIFIVEGDINDMALLKKLFDVV 173 (439)
Q Consensus 100 ~~VlItGa-tG~IG~~l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 173 (439)
++|.|.|| +.+.+..++..+.... -++.+.+.+.+........... ......+.......-+|. .+++++.
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~---~~al~ga 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDR---RRALDGA 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCH---HHHHTTC
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCc---hhhcCCC
Confidence 57889996 4466666666665442 3888888744321110001001 111112222222233343 4566777
Q ss_pred CccEEEEcccccCcccccc----------------Ch--hHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 174 SFTHVMHLAAQAGVRYAMQ----------------NP--NSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 174 ~~d~Vi~~Ag~~~~~~~~~----------------~~--~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
|+||++|+......... .+ .....-|+.-...+++..++..+...++++|
T Consensus 79 --DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 79 --DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp --SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred --CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 99999998743211100 01 1223457777888888888988876777766
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.24 E-value=0.5 Score=40.41 Aligned_cols=113 Identities=26% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------------CChhHHHHHHHh-hhcCCeEEEEcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------------YDPSLKKARQAL-LERSGIFIVEGD 159 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~~~~~~~~~-~~~~~v~~~~~D 159 (439)
....+|+|.| .|++|++++..|++.|. +++++|.+.-. +........... .-.+.+.+...+
T Consensus 28 L~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~ 106 (247)
T d1jw9b_ 28 LKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN 106 (247)
T ss_dssp HHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhh
Confidence 3457999999 59999999999999997 66666643310 111111111111 112444444443
Q ss_pred cC-CHHHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 160 IN-DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 160 l~-d~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
.. +.+.....+... |+||.+.. + ...-..+-++|.+.+. .+|+.+..+.+|
T Consensus 107 ~~~~~~~~~~~~~~~--divid~~d---------~--------~~~~~~in~~~~~~~i--p~i~g~~~~~~g 158 (247)
T d1jw9b_ 107 ALLDDAELAALIAEH--DLVLDCTD---------N--------VAVRNQLNAGCFAAKV--PLVSGAAIRMEG 158 (247)
T ss_dssp SCCCHHHHHHHHHTS--SEEEECCS---------S--------HHHHHHHHHHHHHHTC--CEEEEEEEBTEE
T ss_pred hhhhhcccccccccc--ceeeeccc---------h--------hhhhhhHHHHHHHhCC--Cccccccccccc
Confidence 32 345556666666 88887652 1 1223355667777775 677766554444
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=93.21 E-value=0.023 Score=47.56 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=34.1
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
...||+|.|.| -|-||+.+++.|..-|.+|++.++...
T Consensus 46 eL~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~ 83 (193)
T d1mx3a1 46 RIRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLS 83 (193)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred eeeCceEEEec-cccccccceeeeeccccceeeccCccc
Confidence 47899999999 799999999999999999999998443
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.08 E-value=0.22 Score=38.61 Aligned_cols=30 Identities=27% Similarity=0.159 Sum_probs=24.8
Q ss_pred EEEEECCCChHHHHHHHHHHhC-CCeEEEEE
Q 013602 101 SVLVTGAAGFVGTHVSAALKRR-GDGVLGLD 130 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~-G~~V~~~~ 130 (439)
+|.|.|++|-.|+.+++.+.+. ++++.+..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~ 31 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAEL 31 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 6899999999999999988765 56766654
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.92 E-value=0.16 Score=40.70 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=51.5
Q ss_pred ccCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 95 RARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 95 ~~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
....||+|+|.| =|.+|+-+|+.|...|.+|++... .+.......-.+.++.. ++++++..
T Consensus 19 ~~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~---------DPi~alqA~mdGf~v~~--------~~~a~~~a- 79 (163)
T d1v8ba1 19 FLISGKIVVICG-YGDVGKGCASSMKGLGARVYITEI---------DPICAIQAVMEGFNVVT--------LDEIVDKG- 79 (163)
T ss_dssp CCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECS---------CHHHHHHHHTTTCEECC--------HHHHTTTC-
T ss_pred ceecCCEEEEec-ccccchhHHHHHHhCCCEEEEEec---------CchhhHHHHhcCCccCc--------hhHccccC-
Confidence 347899999999 899999999999999999999987 12222222234555543 35666666
Q ss_pred ccEEEEccccc
Q 013602 175 FTHVMHLAAQA 185 (439)
Q Consensus 175 ~d~Vi~~Ag~~ 185 (439)
|++|-..|..
T Consensus 80 -Di~vTaTGn~ 89 (163)
T d1v8ba1 80 -DFFITCTGNV 89 (163)
T ss_dssp -SEEEECCSSS
T ss_pred -cEEEEcCCCC
Confidence 8888777653
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.73 E-value=0.48 Score=36.27 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=28.7
Q ss_pred CCCEEEEECCC---ChHHHHHHHHHHhCC-CeEEEEEC
Q 013602 98 NGISVLVTGAA---GFVGTHVSAALKRRG-DGVLGLDN 131 (439)
Q Consensus 98 ~~~~VlItGat---G~IG~~l~~~L~~~G-~~V~~~~r 131 (439)
+-++|.|.|++ +..|..+.+.|.+.| .+|+.+..
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP 44 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNI 44 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECS
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEecc
Confidence 44799999998 899999999987766 68988864
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=92.63 E-value=0.14 Score=42.75 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=34.8
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDY 135 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~ 135 (439)
...+|+|.|.| .|-||+.+++.|..-|.+|++.++....
T Consensus 42 ~l~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~ 80 (199)
T d1dxya1 42 ELGQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMK 80 (199)
T ss_dssp CGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred cccceeeeeee-cccccccccccccccceeeeccCCccch
Confidence 36789999999 7999999999999999999999986643
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.52 E-value=0.13 Score=39.33 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=54.8
Q ss_pred CCCCEEEEECCCC----------hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHH
Q 013602 97 RNGISVLVTGAAG----------FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALL 166 (439)
Q Consensus 97 ~~~~~VlItGatG----------~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~ 166 (439)
.+.|+|||.|+.. +-+.+.++.|.+.|++++++..+...-.++. .-..-+...--..+.+
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~----------d~aD~lYfePlt~e~v 74 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDP----------EMADATYIEPIHWEVV 74 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCG----------GGSSEEECSCCCHHHH
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcCh----------hhcceeeeecCCHHHH
Confidence 4568999999733 7799999999999999999987554322211 0111233344568899
Q ss_pred HHhhcccCccEEEEccc
Q 013602 167 KKLFDVVSFTHVMHLAA 183 (439)
Q Consensus 167 ~~~~~~~~~d~Vi~~Ag 183 (439)
.++++..+||.|+-..|
T Consensus 75 ~~Ii~~E~pd~il~~~G 91 (127)
T d1a9xa3 75 RKIIEKERPDAVLPTMG 91 (127)
T ss_dssp HHHHHHHCCSEEECSSS
T ss_pred HHHHHHhCcCCeEEEee
Confidence 99999999999885544
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=92.48 E-value=0.064 Score=44.64 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
..++++.|.| -|.||+.+++.|..-|.+|+..++..
T Consensus 45 l~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~ 80 (191)
T d1gdha1 45 LDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHR 80 (191)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred ecccceEEee-cccchHHHHHHHHhhccccccccccc
Confidence 6789999999 79999999999999999999998743
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.33 E-value=0.064 Score=45.11 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=49.0
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCC-ChhHHHHHHHhhhcCCeEEEEc-ccCCHHHHHHhhcccCccE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY-DPSLKKARQALLERSGIFIVEG-DINDMALLKKLFDVVSFTH 177 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~~~~-Dl~d~~~~~~~~~~~~~d~ 177 (439)
|+|++.| ++.+|..+.+.|.+.|++|.++.-..+.. .........+.....++.++.. |+.+++ +.+.++..++|+
T Consensus 1 Mkiv~~~-~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~-~~~~i~~~~~Dl 78 (203)
T d2blna2 1 MKTVVFA-YHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPL-WVERIAQLSPDV 78 (203)
T ss_dssp CEEEEEE-CHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHH-HHHHHHHTCCSE
T ss_pred CeEEEEe-cCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchh-hhhhhhhhcccc
Confidence 5788886 67789999999999999997765322211 0000000112222335666554 555544 556667778999
Q ss_pred EEEccc
Q 013602 178 VMHLAA 183 (439)
Q Consensus 178 Vi~~Ag 183 (439)
+|...+
T Consensus 79 ii~~g~ 84 (203)
T d2blna2 79 IFSFYY 84 (203)
T ss_dssp EEEESC
T ss_pred eeeeec
Confidence 886653
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.22 E-value=0.1 Score=41.59 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=29.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
|+|.|.| .|-+|+++++.|.+.|++|++.+|+
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~ 32 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSS 32 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcCh
Confidence 5789998 7999999999999999999999883
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.91 E-value=0.092 Score=45.87 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
+|+|+|.| .|.-|...|.+|+++|++|+++.+..
T Consensus 1 ~KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 58999999 59999999999999999999998744
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=91.77 E-value=0.13 Score=44.26 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=31.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
..++|+|.|| |..|..+|..|+++|++|+++.|...
T Consensus 3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4578999995 99999999999999999999998543
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=91.70 E-value=0.18 Score=39.94 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=28.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC-CeEEEEEC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDN 131 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r 131 (439)
|+|.+.|+ |-+|.++++.|++.| ++|++.+|
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r 32 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANR 32 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECS
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeC
Confidence 57999985 999999999998887 89999998
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=91.69 E-value=0.23 Score=40.95 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=33.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
...+++|.|.| .|.||+.+++.|..-|.+|...++..
T Consensus 41 ~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 41 DLEAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred eccccceeecc-ccccchhhhhhhhccCceEEEEeecc
Confidence 36789999999 79999999999999999999999854
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.58 E-value=0.11 Score=42.52 Aligned_cols=75 Identities=24% Similarity=0.199 Sum_probs=50.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEccc-------------------
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI------------------- 160 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl------------------- 160 (439)
-+|+|.|| |-.|.+-++-....|+.|.++|.+... ++...+..-.++..+.
T Consensus 30 a~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~---------~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~ 99 (183)
T d1l7da1 30 ARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAAT---------KEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEE 99 (183)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTT---------HHHHHHTTCEECCC---------------------
T ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHH---------HHHHHHhhcceEEEeccccccccccccchhhcCHH
Confidence 48999995 999999999999999999999984431 1111222223332221
Q ss_pred ---CCHHHHHHhhcccCccEEEEcccccC
Q 013602 161 ---NDMALLKKLFDVVSFTHVMHLAAQAG 186 (439)
Q Consensus 161 ---~d~~~~~~~~~~~~~d~Vi~~Ag~~~ 186 (439)
...+.+.+.+++. |+||-.|-+.+
T Consensus 100 ~~~~~~~~l~~~l~~a--DlVI~talipG 126 (183)
T d1l7da1 100 FRKKQAEAVLKELVKT--DIAITTALIPG 126 (183)
T ss_dssp --CCHHHHHHHHHTTC--SEEEECCCCTT
T ss_pred HHHHHHHHHHHHHHhh--hhheeeeecCC
Confidence 1234566667777 99999887644
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.58 E-value=0.14 Score=43.61 Aligned_cols=38 Identities=32% Similarity=0.345 Sum_probs=34.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDY 135 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~ 135 (439)
...++|+|.| .|..|...|..|+++|++|+++.+....
T Consensus 47 ~~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 47 KNKDSVLIVG-AGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred cCCceEEEEc-ccHHHHHHHHHHHHhccceeeEeecccc
Confidence 5678999999 5999999999999999999999986654
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=91.57 E-value=0.31 Score=41.47 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=32.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
++|++|+|-| -|-+|+++++.|.+.|++|++.+.
T Consensus 37 l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~ 70 (230)
T d1leha1 37 LEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDV 70 (230)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecc
Confidence 7899999999 799999999999999999999876
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.41 E-value=0.28 Score=38.77 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.8
Q ss_pred CCCEEEEE-CCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 98 NGISVLVT-GAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 98 ~~~~VlIt-GatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
.++.|+|. .+.||||.++|..|+++|.+|+++.+..
T Consensus 38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~ 74 (156)
T d1djqa2 38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 74 (156)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence 45666665 3469999999999999999999999844
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.36 E-value=0.35 Score=36.28 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=28.0
Q ss_pred CCEEEEECCCChHHHHHHHHHH---hCCCeEEEEECCCC
Q 013602 99 GISVLVTGAAGFVGTHVSAALK---RRGDGVLGLDNFND 134 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~---~~G~~V~~~~r~~~ 134 (439)
.++++|.|| |++|-++|..|. .+|.+|+++.|...
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 478999996 999999996655 44568999998554
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.11 Score=50.26 Aligned_cols=112 Identities=17% Similarity=0.087 Sum_probs=64.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------------CChhHHHHHHHhhh--cCC--eEEE
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------------YDPSLKKARQALLE--RSG--IFIV 156 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~~~~~~~~~~~--~~~--v~~~ 156 (439)
+...+|+|.|+ |++|.++++.|+..|. +++++|.+.-. +.. ......+.+. .+. +.++
T Consensus 23 L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~-ka~~~~~~L~~lNp~v~i~~~ 100 (529)
T d1yova1 23 LESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN-RAEAAMEFLQELNSDVSGSFV 100 (529)
T ss_dssp HHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSB-HHHHHHHHHHTTCTTSBCCEE
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCH-HHHHHHHHHHHhCCCCcEEEE
Confidence 34468999996 8999999999999995 67777653310 011 1111111111 122 3334
Q ss_pred EcccCCH-HHHHHhhcccCccEEEEcccccCccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 013602 157 EGDINDM-ALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYG 231 (439)
Q Consensus 157 ~~Dl~d~-~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~SS~~v~g 231 (439)
..++.+. +...++++++ |+||.+.. |......+.++|++.+. .+|.+.+.+.||
T Consensus 101 ~~~~~~~~~~~~~~~~~~--dvVv~~~~-----------------~~~~~~~l~~~c~~~~i--p~i~~~~~G~~G 155 (529)
T d1yova1 101 EESPENLLDNDPSFFCRF--TVVVATQL-----------------PESTSLRLADVLWNSQI--PLLICRTYGLVG 155 (529)
T ss_dssp SSCHHHHHHSCGGGGGGC--SEEEEESC-----------------CHHHHHHHHHHHHHHTC--CEEEEEEETTEE
T ss_pred cCCchhhhhhHHHHhcCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEeccCCEE
Confidence 3332211 1112344555 88886542 12223457788888875 789998888877
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.31 E-value=0.092 Score=43.10 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=30.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFND 134 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~ 134 (439)
+|+|+|.| .|..|...|..|.++|+ +|+++.+...
T Consensus 4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLG-AGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 57899999 59999999999999998 5999998553
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=91.21 E-value=0.37 Score=36.30 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=53.8
Q ss_pred CCCEEEEECCCC----------hHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHH
Q 013602 98 NGISVLVTGAAG----------FVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLK 167 (439)
Q Consensus 98 ~~~~VlItGatG----------~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~ 167 (439)
+.++|||.|+.. +-+.+.++.|.+.|++++++..+.+.-.++.. -..-+...--..+.+.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~d----------~aD~lYfeplt~e~v~ 72 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYD----------TSDRLYFEPVTLEDVL 72 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTT----------SSSEEECCCCSHHHHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcChh----------hcCceEEccCCHHHHH
Confidence 457999999633 77999999999999999999876554332211 1112233344678899
Q ss_pred HhhcccCccEEEEccc
Q 013602 168 KLFDVVSFTHVMHLAA 183 (439)
Q Consensus 168 ~~~~~~~~d~Vi~~Ag 183 (439)
++++..+||.|+-..|
T Consensus 73 ~Ii~~E~p~~ii~~~G 88 (121)
T d1a9xa4 73 EIVRIEKPKGVIVQYG 88 (121)
T ss_dssp HHHHHHCCSEEECSSS
T ss_pred HHHHHhCCCEEEeehh
Confidence 9998889998875443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.13 E-value=0.3 Score=39.31 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=46.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCCCChhHHHHHHHhhhcCCe-EEEEcc-cC-CHHHHHHhhcc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGI-FIVEGD-IN-DMALLKKLFDV 172 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~D-l~-d~~~~~~~~~~ 172 (439)
..+.+|+|.|+ |++|...+..+...|. +|++.+++.+ +.+ ... .-+. .++.-+ -. ..+.+.+....
T Consensus 27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~-----rl~-~a~---~~GAd~~in~~~~~~~~~~~~~~~~~ 96 (175)
T d1cdoa2 27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPD-----KFE-KAK---VFGATDFVNPNDHSEPISQVLSKMTN 96 (175)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG-----GHH-HHH---HTTCCEEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHH-----HHH-HHH---HcCCcEEEcCCCcchhHHHHHHhhcc
Confidence 46779999995 7788888888888876 6777776222 111 111 2222 233221 11 12445555545
Q ss_pred cCccEEEEcccc
Q 013602 173 VSFTHVMHLAAQ 184 (439)
Q Consensus 173 ~~~d~Vi~~Ag~ 184 (439)
..+|++|.+.|.
T Consensus 97 ~G~d~vid~~G~ 108 (175)
T d1cdoa2 97 GGVDFSLECVGN 108 (175)
T ss_dssp SCBSEEEECSCC
T ss_pred CCcceeeeecCC
Confidence 467999999974
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.99 E-value=0.15 Score=45.75 Aligned_cols=35 Identities=29% Similarity=0.528 Sum_probs=31.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
.|+|+|.| +|.-|..+|..|+++|++|.++.....
T Consensus 2 ~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 47999999 599999999999999999999987554
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.87 E-value=0.16 Score=41.81 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=32.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
...+|++.|.| .|.||+.+++.|..-|.+|++.++.
T Consensus 41 ~l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~ 76 (184)
T d1ygya1 41 EIFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPY 76 (184)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred cccceeeeecc-ccchhHHHHHHhhhccceEEeecCC
Confidence 36789999999 6999999999999999999999874
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=90.69 E-value=0.1 Score=45.47 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=28.7
Q ss_pred EEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
|+|.| .|.+|..+|.+|+++|.+|+++++..
T Consensus 7 vvIIG-aGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIG-GGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 99999 59999999999999999999999843
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=90.62 E-value=0.51 Score=35.21 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=37.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHh---CCCeEEEEECCCCCC---ChhHHHHHHHhhhcCCeEEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKR---RGDGVLGLDNFNDYY---DPSLKKARQALLERSGIFIV 156 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~---~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~v~~~ 156 (439)
.++++|.| .|++|-++|..|.+ .|.+|.++.|...-. ++.......+.+...++.++
T Consensus 18 p~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~ 80 (117)
T d1feca2 18 PKRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVR 80 (117)
T ss_dssp CSEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEE
T ss_pred CCeEEEEC-CChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEE
Confidence 37899999 49999999976554 488999999866432 22333333344444555544
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=90.27 E-value=0.14 Score=45.46 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=32.4
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
..+.|+|+|.| +|..|...|..|.++|++|+++.+..
T Consensus 27 ~~~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 27 TSNPKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CSSCCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34568999999 59999999999999999999998733
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=90.15 E-value=0.087 Score=42.53 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=26.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHhC-CCeEEEEE
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRR-GDGVLGLD 130 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~ 130 (439)
.++|.|.|++|-+|+.+++.+.+. +.++.+..
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~ 36 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAAL 36 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 468999999999999999999876 56666554
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.05 E-value=0.6 Score=41.00 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=32.5
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
.+++++|+|-| -|-+|+++++.|.+.|++|++++..
T Consensus 33 ~L~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD~ 68 (293)
T d1hwxa1 33 GFGDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGES 68 (293)
T ss_dssp SSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEcc
Confidence 37899999999 6999999999999999999998753
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=0.53 Score=36.29 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=38.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHH----hCCCeEEEEECCCCCC----ChhHHHHHHHhhhcCCeEEE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALK----RRGDGVLGLDNFNDYY----DPSLKKARQALLERSGIFIV 156 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~----~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~v~~~ 156 (439)
..++++|.|| |++|-+++..|. +.|.+|+++.+..... .........+.+...+++++
T Consensus 36 ~~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~ 101 (137)
T d1m6ia2 36 EVKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM 101 (137)
T ss_dssp HCSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 3579999995 999999999886 3589999998866432 22222333344444555554
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.81 E-value=0.39 Score=44.90 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=50.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-eEEEEECCCCC---------------CChhHHHHH---HHhhhcCCeEEEEc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDY---------------YDPSLKKAR---QALLERSGIFIVEG 158 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~~~~~~---~~~~~~~~v~~~~~ 158 (439)
...+|||.|+ |++|.++++.|+..|. ++.++|.+.-. +........ +.....-.+..+..
T Consensus 36 ~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 114 (426)
T d1yovb1 36 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN 114 (426)
T ss_dssp HHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred hcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence 3468999996 8899999999999997 78888764410 011111111 11112235666666
Q ss_pred ccCCHHHHHHhhcccCccEEEEcc
Q 013602 159 DINDMALLKKLFDVVSFTHVMHLA 182 (439)
Q Consensus 159 Dl~d~~~~~~~~~~~~~d~Vi~~A 182 (439)
++.+.. .++++++ |+||++.
T Consensus 115 ~i~~~~--~~~~~~~--DlVi~~~ 134 (426)
T d1yovb1 115 KIQDFN--DTFYRQF--HIIVCGL 134 (426)
T ss_dssp CGGGBC--HHHHTTC--SEEEECC
T ss_pred cccchH--HHHHHhc--chheecc
Confidence 666543 3567776 9999775
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=89.70 E-value=0.16 Score=40.71 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=30.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC--eEEEEECCCC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGD--GVLGLDNFND 134 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~ 134 (439)
.||+|+|.|| |++|-.++..|.+.+. +|+++.+...
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 4789999995 9999999999999885 7888877553
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=89.54 E-value=0.54 Score=33.44 Aligned_cols=68 Identities=22% Similarity=0.228 Sum_probs=45.0
Q ss_pred CEEEEECCCChHHH-HHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEE
Q 013602 100 ISVLVTGAAGFVGT-HVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHV 178 (439)
Q Consensus 100 ~~VlItGatG~IG~-~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~V 178 (439)
|+|-++|- |++|- .||+.|.++|+.|.+.|+..+ + ..+.+...++.+..+ .+++. +++ .|.|
T Consensus 2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~-------~-~t~~L~~~Gi~i~~g--h~~~~----i~~--~d~v 64 (89)
T d1j6ua1 2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEET-------E-RTAYLRKLGIPIFVP--HSADN----WYD--PDLV 64 (89)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCC-------H-HHHHHHHTTCCEESS--CCTTS----CCC--CSEE
T ss_pred cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCC-------h-hHHHHHHCCCeEEee--ecccc----cCC--CCEE
Confidence 67888884 66665 789999999999999998432 1 222344557766544 22222 233 4999
Q ss_pred EEcccc
Q 013602 179 MHLAAQ 184 (439)
Q Consensus 179 i~~Ag~ 184 (439)
|...++
T Consensus 65 V~SsAI 70 (89)
T d1j6ua1 65 IKTPAV 70 (89)
T ss_dssp EECTTC
T ss_pred EEecCc
Confidence 988876
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=89.24 E-value=1 Score=35.29 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=28.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHhC--CCeEEEEEC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRR--GDGVLGLDN 131 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~--G~~V~~~~r 131 (439)
.|+|.|.|+||-||..+..-+.+. .++|+++.=
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa 36 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA 36 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 379999999999999999999876 478888864
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=89.09 E-value=0.43 Score=39.72 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=55.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhH----HHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSL----KKARQALLERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
.|+|++.| ++-++..+.+.|.+.|++|.++.-..++..... ...........++.+...+..+.+...+.++..+
T Consensus 3 ~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (206)
T d1fmta2 3 SLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQ 81 (206)
T ss_dssp CCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHTT
T ss_pred CcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhhc
Confidence 47899998 678899999999999999887764332211110 0111222334567777777777777888888888
Q ss_pred ccEEEEccc
Q 013602 175 FTHVMHLAA 183 (439)
Q Consensus 175 ~d~Vi~~Ag 183 (439)
+|++|-..+
T Consensus 82 ~d~~v~~~~ 90 (206)
T d1fmta2 82 ADVMVVVAY 90 (206)
T ss_dssp CSEEEEESC
T ss_pred ceEEEeecc
Confidence 998776554
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=88.96 E-value=0.17 Score=43.98 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=29.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
|+|+|.|| |.-|...|.+|.++|++|+++.+..
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 57999995 9999999999999999999998743
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.90 E-value=0.22 Score=41.75 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=29.4
Q ss_pred EEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
|+|.| +|.-|...|..|+++|++|.++.+...
T Consensus 8 viViG-aG~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 89999 699999999999999999999998553
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.81 E-value=0.73 Score=37.85 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=54.0
Q ss_pred CCCEEE-EECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhh--hcCCeEEEEcccCCHHHHHHhhcccC
Q 013602 98 NGISVL-VTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL--ERSGIFIVEGDINDMALLKKLFDVVS 174 (439)
Q Consensus 98 ~~~~Vl-ItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~~ 174 (439)
.+.+++ +|.|+|+.-.++.+.+ . +.+|+++|++. ..-...++.+ ...++.++.++..+...+.+-+....
T Consensus 23 ~~~~~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~-----~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~ 95 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDS-----EVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEK 95 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHC-T-TCEEEEEESCH-----HHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSC
T ss_pred CCCEEEEecCCCcHHHHHHHhcC-C-CCeEEEeechH-----HHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCC
Confidence 334444 7888888888888776 3 46899999932 2222222222 13579999999988777666554446
Q ss_pred ccEEEEcccccC
Q 013602 175 FTHVMHLAAQAG 186 (439)
Q Consensus 175 ~d~Vi~~Ag~~~ 186 (439)
+|.|+--.|+.+
T Consensus 96 vdgIl~DlGvSs 107 (192)
T d1m6ya2 96 VDGILMDLGVST 107 (192)
T ss_dssp EEEEEEECSCCH
T ss_pred cceeeeccchhH
Confidence 699888877743
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.77 E-value=0.21 Score=41.31 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=26.8
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
|+|.|.| .|++|..++..| ++|++|++.|-+
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din 31 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDIL 31 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSC
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECC
Confidence 6799997 899999999766 579999999973
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=87.74 E-value=0.26 Score=34.16 Aligned_cols=34 Identities=24% Similarity=0.118 Sum_probs=30.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
+|+|.|.| +|.+|+-++..-.+.|.+|++++-+.
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 37899999 69999999999999999999999643
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=87.56 E-value=2.6 Score=31.14 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=27.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
||+|||.=-+-.+-..+...|.+.|++|+..+.
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~ 33 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEAT 33 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEEC
Confidence 688999988889999999999889998876543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=87.44 E-value=0.24 Score=43.05 Aligned_cols=31 Identities=35% Similarity=0.567 Sum_probs=28.6
Q ss_pred EEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 102 VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
|+|.| .|.+|..+|.+|+++|++|+++.+..
T Consensus 6 vvIIG-aGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVG-AGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 89999 59999999999999999999999844
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.27 E-value=0.64 Score=38.58 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=46.9
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCC-hhHHHHHHHhhhcCCeEEE------EcccCCHHHHHHhhcc
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD-PSLKKARQALLERSGIFIV------EGDINDMALLKKLFDV 172 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~v~~~------~~Dl~d~~~~~~~~~~ 172 (439)
|+|++.| ++..|..+.+.|.+.|++|.++.-..++.. ...-. ......++.++ .-+..+++.+ +.++.
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~---~~a~~~~ipv~~~~~~~~~~~~~~~~~-~~l~~ 75 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLG---LEAEKDGVPVFKYSRWRAKGQALPDVV-AKYQA 75 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHH---HHHHHHTCCEEECSCCEETTEECHHHH-HHHHT
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhh---hhHHhcCCcccccccccccccccHHHH-HHHHH
Confidence 6788898 678999999999999999987653222111 11111 11112233332 2344455544 45566
Q ss_pred cCccEEEEccc
Q 013602 173 VSFTHVMHLAA 183 (439)
Q Consensus 173 ~~~d~Vi~~Ag 183 (439)
.++|++|-.+.
T Consensus 76 ~~~Dliv~~~~ 86 (203)
T d2bw0a2 76 LGAELNVLPFC 86 (203)
T ss_dssp TCCSEEEESSC
T ss_pred hCCCceEEeec
Confidence 78899887653
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.23 E-value=0.19 Score=44.04 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=28.8
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
+|+|.|| |-.|..+|..|.++|++|.++.+.
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~ 34 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQ 34 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5999995 899999999999999999999883
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=87.11 E-value=0.39 Score=41.19 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
+++++|+|-| -|-+|+++++.|.+.|++|++++..
T Consensus 29 l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD~ 63 (242)
T d1v9la1 29 IEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSDI 63 (242)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeecc
Confidence 7899999999 7999999999999999999988853
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.83 E-value=0.45 Score=41.82 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=30.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
+..+|+|+| .|.-|...|.+|.++|++|+++-...
T Consensus 4 ~~~kViVIG-aG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIG-SGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEEC-CBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 345799999 59999999999999999999996533
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=85.56 E-value=2.9 Score=33.70 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=59.8
Q ss_pred CCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhcccCccEEEEcccccC
Q 013602 107 AAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAG 186 (439)
Q Consensus 107 atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~Vi~~Ag~~~ 186 (439)
||-|-|.|. +.+++++-+|++++|+. ..-. ..+.....++.+++.+..+.+........-++|.|+---|+.+
T Consensus 25 ~T~G~GGhs-~~iL~~~~~viaiD~D~-----~ai~-~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs 97 (182)
T d1wg8a2 25 ATLGGAGHA-RGILERGGRVIGLDQDP-----EAVA-RAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSS 97 (182)
T ss_dssp TTCTTSHHH-HHHHHTTCEEEEEESCH-----HHHH-HHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCH
T ss_pred eCCCCcHHH-HHHhcccCcEEEEhhhh-----hHHH-HHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEccCCH
Confidence 454555564 45556677999999933 1111 1222345689999999888766655444345698888778754
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 013602 187 VRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWAS 225 (439)
Q Consensus 187 ~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~V~~S 225 (439)
.. .+++.+.+...-.......+..+..+ +++.++
T Consensus 98 ~q--ld~~~re~~~~~~~L~~~~~~lk~gg---~~~ii~ 131 (182)
T d1wg8a2 98 FH--LDDPSDELNALKEFLEQAAEVLAPGG---RLVVIA 131 (182)
T ss_dssp HH--HHCGGTHHHHHHHHHHHHHHHEEEEE---EEEEEE
T ss_pred HH--hhcchHHHHHHHHHHHHHHhhhCCCC---eEEEEe
Confidence 32 34444444433222233333333322 666555
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.25 E-value=0.07 Score=45.39 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=24.3
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEE
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLG 128 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~ 128 (439)
|+|+|.| .|-+|..+|.+|+++|++|++
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~~v~v 28 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYHSVLQ 28 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHTTTSS
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCceE
Confidence 6899999 599999999999999986443
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=85.15 E-value=3 Score=32.42 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=24.8
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
+|-+.| .|-+|..+++.|++.|+.| +.+|
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~~~-~~~~ 30 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFPTL-VWNR 30 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSCEE-EECS
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCCEE-EEeC
Confidence 588889 6999999999999999866 5666
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=85.01 E-value=0.51 Score=37.83 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=28.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
+++|+|.| .|++|-+++..|.+.|.+|.++.+..
T Consensus 3 ~~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 3 NDNVVIVG-TGLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCEEEEC-CcHHHHHHHHHHHHcCCceEEEEecC
Confidence 57899999 59999999999999998876665544
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=84.82 E-value=0.36 Score=42.40 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=28.5
Q ss_pred EEEEECCCChHHHHHHHHHHhCCC-eEEEEECCC
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFN 133 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 133 (439)
.|+|.| .|.+|..+|.+|+++|. +|++++++.
T Consensus 3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 599999 59999999999999996 699999853
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=84.78 E-value=0.42 Score=41.27 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 131 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r 131 (439)
+++++|+|-| -|-+|.++++.|.+.|++|++++.
T Consensus 34 l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 34 LVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp STTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence 6889999999 799999999999999999998875
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=84.10 E-value=0.56 Score=41.46 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=32.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
++.-.|+|.|| |..|..++.+|.++|.+|+++.+..+
T Consensus 5 ~~~~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 5 PEEVDVLVVGA-GFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp CSEEEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCCCCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 34567999995 99999999999999999999998554
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=83.89 E-value=2.9 Score=32.75 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=21.8
Q ss_pred CCEEEEECCCChHHHHHH-HHHHhC-CCeEEEEE
Q 013602 99 GISVLVTGAAGFVGTHVS-AALKRR-GDGVLGLD 130 (439)
Q Consensus 99 ~~~VlItGatG~IG~~l~-~~L~~~-G~~V~~~~ 130 (439)
..+|.|.| +|+||..+. +.|... ..++++++
T Consensus 4 kirvaIIG-aG~ig~~~~~~~l~~~~~~el~ava 36 (157)
T d1nvmb1 4 KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMV 36 (157)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEE
Confidence 36899999 899999754 444444 34677765
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.56 E-value=0.47 Score=41.90 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=30.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFND 134 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 134 (439)
..|+|.| +|.-|..+|.+|++.|++|.++.+...
T Consensus 2 ~dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 2 YDYIIVG-SGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEEEC-CSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred ccEEEEC-CcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4699999 599999999999999999999987553
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=83.31 E-value=0.45 Score=34.96 Aligned_cols=37 Identities=19% Similarity=0.101 Sum_probs=32.0
Q ss_pred cCCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCC
Q 013602 96 ARNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 96 ~~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 133 (439)
...+|+|+|.| +|--|..++.+|++.+.+|+...|..
T Consensus 29 ~f~gK~VlVVG-~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 29 LFVGESVLVVG-GASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp GGTTCCEEEEC-SSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred hcCCCeEEEEC-CCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 36889999999 68999999999999988888777744
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.92 E-value=3.8 Score=32.62 Aligned_cols=31 Identities=26% Similarity=0.508 Sum_probs=26.0
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC-CeEEEEEC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDN 131 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r 131 (439)
++|.|-| -|-||+.+++.|.++. .+|+++..
T Consensus 3 irIaING-fGRIGR~v~Ral~~~~dieiVaINd 34 (172)
T d2czca2 3 VKVGVNG-YGTIGKRVAYAVTKQDDMELIGITK 34 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred EEEEEEC-CCHHHHHHHHHHHhCCCceEEEEec
Confidence 5899999 6999999999998775 57777764
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=82.18 E-value=1.8 Score=34.37 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=26.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhC-CCeEEEEEC
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRR-GDGVLGLDN 131 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~-G~~V~~~~r 131 (439)
+..+|.|.| .|.+|+..++.|.+. +.++++++.
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~ 35 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFS 35 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEe
Confidence 456899999 599999999999876 567776654
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=82.16 E-value=0.62 Score=42.04 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=28.6
Q ss_pred EEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Q 013602 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF 132 (439)
Q Consensus 101 ~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~ 132 (439)
-|+|+| +|+-|..+|.+|++.|++|.++-+-
T Consensus 4 ~VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIG-TGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEeC-cCHHHHHHHHHHHHCcCeEEEEecC
Confidence 389999 7999999999999999999999874
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=82.12 E-value=0.74 Score=39.06 Aligned_cols=74 Identities=11% Similarity=0.006 Sum_probs=47.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHh-hhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL-LERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
..+++||=.||..|. ++..|+++|.+|++++.+.. .....+... ....++.++.+|+.+.+ +. -.+
T Consensus 36 ~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~----ml~~A~~~~~~~~~~v~~~~~d~~~~~-----~~-~~f 102 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQE----MLSEAENKFRSQGLKPRLACQDISNLN-----IN-RKF 102 (246)
T ss_dssp CCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHH----HHHHHHHHHHHTTCCCEEECCCGGGCC-----CS-CCE
T ss_pred CCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchh----hhhhccccccccCccceeeccchhhhc-----cc-ccc
Confidence 456789999976553 67788889999999987221 111112111 12347899999987643 11 256
Q ss_pred cEEEEccc
Q 013602 176 THVMHLAA 183 (439)
Q Consensus 176 d~Vi~~Ag 183 (439)
|+|+...+
T Consensus 103 D~i~~~~~ 110 (246)
T d1y8ca_ 103 DLITCCLD 110 (246)
T ss_dssp EEEEECTT
T ss_pred cccceeee
Confidence 99986544
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=81.86 E-value=0.85 Score=40.68 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCCC
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFND 134 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~~ 134 (439)
+..|+|+|.| .|.-|...|..|+++| ++|+++.|...
T Consensus 2 ~~~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 2 PTIRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CSCCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 3568999999 4999999999999887 69999998654
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=81.42 E-value=0.57 Score=40.60 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=32.3
Q ss_pred CCCCEEEEECCCChHHHHH-----HHHHHhCCCeEEEEECCC
Q 013602 97 RNGISVLVTGAAGFVGTHV-----SAALKRRGDGVLGLDNFN 133 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l-----~~~L~~~G~~V~~~~r~~ 133 (439)
..+++|+|+.|-||+|+.+ +..|+++|++|.+++-+.
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp 58 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP 58 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4678899998899999986 789999999999999854
|
| >d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: 2-methylacyl-CoA racemase Mcr species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.59 E-value=2.4 Score=38.03 Aligned_cols=79 Identities=18% Similarity=0.110 Sum_probs=55.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHH---HHHHhhccc
Q 013602 97 RNGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMA---LLKKLFDVV 173 (439)
Q Consensus 97 ~~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 173 (439)
++|-+||=.+ ...-|-...+.|+..|++|+=+-+-.. ...........+=+-+.+|+.+++ .+.++++++
T Consensus 4 L~girVld~~-~~~agp~~~~~lad~GA~VikvE~p~~------~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~a 76 (359)
T d1x74a1 4 LSGLRVVELA-GIGPGPHAAMILGDLGADVVRIDRPSS------VDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKA 76 (359)
T ss_dssp TTTCEEEEEC-CSTHHHHHHHHHHHTTCEEEEEECC-----------CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEcC-CchHHHHHHHHHHHhCCEEEEECCCCC------CCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhhC
Confidence 6788888766 567788999999999999999975211 000001112346678899999876 477788888
Q ss_pred CccEEEEcccc
Q 013602 174 SFTHVMHLAAQ 184 (439)
Q Consensus 174 ~~d~Vi~~Ag~ 184 (439)
|+||+|--.
T Consensus 77 --Dv~i~n~~p 85 (359)
T d1x74a1 77 --DVLIEGYRP 85 (359)
T ss_dssp --SEEEECSCT
T ss_pred --CEEEecCCC
Confidence 999998754
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=80.54 E-value=1.4 Score=38.98 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=45.4
Q ss_pred CCCCEEE-EECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHHHhhhcCCeEEEEcccCCHHHHHHhhc-ccC
Q 013602 97 RNGISVL-VTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFD-VVS 174 (439)
Q Consensus 97 ~~~~~Vl-ItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~-~~~ 174 (439)
..+++|| +..+||.++-++ ++.|++|+.++.+....+...............++++..|+.+. +++..+ +-+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~a----a~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~--l~~~~~~~~~ 204 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVA----AAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF--IQREERRGST 204 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHH----HHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH--HHHHHHHTCC
T ss_pred cCCCeEEEecCCCcHHHHHH----HhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHh--HHHHhhcCCC
Confidence 3577898 666677666554 46799999998733211111111111112234689999987543 333332 346
Q ss_pred ccEEEEcc
Q 013602 175 FTHVMHLA 182 (439)
Q Consensus 175 ~d~Vi~~A 182 (439)
+|+||..-
T Consensus 205 fD~IilDP 212 (309)
T d2igta1 205 YDIILTDP 212 (309)
T ss_dssp BSEEEECC
T ss_pred CCEEEECC
Confidence 79999753
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=80.37 E-value=2.6 Score=37.23 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=45.0
Q ss_pred CCCCEEE-EECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHHH--HhhhcCCeEEEEcccCCHHHHHHhhc-c
Q 013602 97 RNGISVL-VTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQ--ALLERSGIFIVEGDINDMALLKKLFD-V 172 (439)
Q Consensus 97 ~~~~~Vl-ItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~v~~~~~Dl~d~~~~~~~~~-~ 172 (439)
..|++|| +..++|+++-++ ++.+.+|++++.+.. .....+. +...-.++.++.+|..+.. +.+.+ .
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~----a~g~~~V~~vD~s~~----al~~a~~n~~~ngl~~~~~i~~d~~~~~--~~~~~~~ 213 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHL----ALGFREVVAVDSSAE----ALRRAEENARLNGLGNVRVLEANAFDLL--RRLEKEG 213 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHH----HHHEEEEEEEESCHH----HHHHHHHHHHHTTCTTEEEEESCHHHHH--HHHHHTT
T ss_pred hCCCeeeccCCCCcHHHHHH----HhcCCcEEeecchHH----HHHHHHHHHHHcCCCCcceeeccHHHHh--hhhHhhh
Confidence 5688999 555567666544 345789999998432 1111111 1122246889999876532 22222 2
Q ss_pred cCccEEEEccc
Q 013602 173 VSFTHVMHLAA 183 (439)
Q Consensus 173 ~~~d~Vi~~Ag 183 (439)
.++|.||.+.-
T Consensus 214 ~~fD~Vi~DpP 224 (318)
T d1wxxa2 214 ERFDLVVLDPP 224 (318)
T ss_dssp CCEEEEEECCC
T ss_pred cCCCEEEEcCC
Confidence 35699998764
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=80.32 E-value=0.83 Score=37.26 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=28.1
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC--CeEEEEECCC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG--DGVLGLDNFN 133 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G--~~V~~~~r~~ 133 (439)
|+|+|.|| |++|-++|..|.+.+ .+|+++.|..
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 68999995 999999999998874 5899888754
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=80.29 E-value=0.66 Score=37.63 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=26.7
Q ss_pred CEEEEECCCChHHHHHHHHHHhCC-CeEEEEEC
Q 013602 100 ISVLVTGAAGFVGTHVSAALKRRG-DGVLGLDN 131 (439)
Q Consensus 100 ~~VlItGatG~IG~~l~~~L~~~G-~~V~~~~r 131 (439)
-+|.|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 2 IKVaING-fGRIGR~v~Ral~~~~dievVaInd 33 (178)
T d1b7go1 2 VNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAK 33 (178)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred eEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEEC
Confidence 4799999 7999999999999875 68888865
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=80.26 E-value=2.2 Score=35.25 Aligned_cols=75 Identities=25% Similarity=0.178 Sum_probs=46.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEECCCCCCChhHHHHH--HHhhhcCCeEEEEcccCCHHHHHHhhcccCc
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKAR--QALLERSGIFIVEGDINDMALLKKLFDVVSF 175 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 175 (439)
.+++||=.||..|. . +..|+++|.+|++++.+.+ .....+ .......++.++.+|..+.. +....+
T Consensus 15 ~~~rVLDiGcG~G~--~-~~~l~~~~~~v~gvD~s~~----~i~~A~~~~~~~~~~~i~~~~~d~~~l~-----~~~~~f 82 (231)
T d1vl5a_ 15 GNEEVLDVATGGGH--V-ANAFAPFVKKVVAFDLTED----ILKVARAFIEGNGHQQVEYVQGDAEQMP-----FTDERF 82 (231)
T ss_dssp SCCEEEEETCTTCH--H-HHHHGGGSSEEEEEESCHH----HHHHHHHHHHHTTCCSEEEEECCC-CCC-----SCTTCE
T ss_pred CcCEEEEecccCcH--H-HHHHHHhCCEEEEEECCHH----HHhhhhhccccccccccccccccccccc-----cccccc
Confidence 45799989865443 2 3557788999999987321 111111 12233468999999987642 223356
Q ss_pred cEEEEcccc
Q 013602 176 THVMHLAAQ 184 (439)
Q Consensus 176 d~Vi~~Ag~ 184 (439)
|+|+.+.+.
T Consensus 83 D~v~~~~~l 91 (231)
T d1vl5a_ 83 HIVTCRIAA 91 (231)
T ss_dssp EEEEEESCG
T ss_pred ccccccccc
Confidence 998877654
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.03 E-value=4.4 Score=31.60 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=28.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCeEEEEE
Q 013602 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLD 130 (439)
Q Consensus 98 ~~~~VlItGatG~IG~~l~~~L~~~G~~V~~~~ 130 (439)
+|++|.|.+.+|+.|--++..+.+.|-++--+.
T Consensus 2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l~ 34 (163)
T d2csua3 2 RGNKVAIMTNAGGPGVLTADELDKRGLKLATLE 34 (163)
T ss_dssp SSSEEEEEESCHHHHHHHHHHHHTTTCEECCCC
T ss_pred CCCeEEEEECChHHHHHHHHHHHHcCCccCCCC
Confidence 578999999999999999999999997775553
|