Citrus Sinensis ID: 013613

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYPSPGLSSLDMNSNNIQARPSRLSQLFSAARSFRPSSLLDPNYRRSLLNELSASLTSPQPVASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRDTRDNLLRDNGSHFYGNDIEEQMIQAAIEASKQEASSGSGVVQRELELPEDDEFSRAISLSLKTAEQEKTIRGQGVKDRDRKLEVYDLVKEAEKTNNSTRKPGKSSVQEGAENMRSQSPMRYKSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGCSKYVQSDLDSNAGPGSSSGSRASSSVMAQQSLREQQDDEYLASLLADREKEMNALKEAESLQLSRDESQKKILEEEVVKLLSFGCLIYSPCSFVLKTTFLCYLKTLTV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEHHHHEEEccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHcccccccccccccccccccEEEEcEEEEcccccccccccccEEEEccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mtrptqetvdtftsitgASQSVALQKLEEYGGNLNEAVNAYFSeghrdilnptavaypypspglssldmnsnniqarpSRLSQLFSAArsfrpsslldpnyRRSLLNELSasltspqpvashtggvmglpaefsswneqpyhsgqmpydydgartssyhgrdtrdnllrdngshfygndIEEQMIQAAIEASKqeassgsgvvqrelelpeddeFSRAISLSLKTAEQEktirgqgvkdrdrkLEVYDLVKEAEktnnstrkpgkssvqegaenmrsqspmryksehdvnvhtqcskdafpanewggisskELDEAVMLEAALFGEAATGCSKYvqsdldsnagpgsssgsrassSVMAQQSLREQQDDEYLASLLADREKEMNALKEAESLQLSRDESQKKILEEEVVKLLSFgcliyspcsfvlkTTFLCYLKTLTV
Flexible Loop (DISEMBL)
mtrptqetvdtftsitgasqsVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYPSPGLSSLDMNSNNIQARPSRLSQLFSAARSfrpsslldpnYRRSLLNELSASLTSPQPVASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRDTRDNLLRDNGSHFYGNDIEEQMIQAAIEASKQEASSGSGVVQRELELPEDDEFSRAISlslktaeqektirgqgvkdrdrklEVYDLVkeaektnnstrkpgkssvqegaenmrsqSPMRYKSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGCSKYVQSDLDSNAGPGSSSGSRASSSVMAQQSLREQQDDEYLASLLADREKEMNALKEaeslqlsrdesQKKILEEEVVKLLSFGCLIYSPCSFVLKTTFLCYLKTLTV
Low Complexity Region (SEG)
MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYPSPGLSSLDMNSNNIQARPSRLSQLFSAARSFRPSSLLDPNYRRSLLNELSASLTSPQPVASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRDTRDNLLRDNGSHFYGNDIEEQMIQAAIEASKQEASSGSGVVQRELELPEDDEFSRAISLSLKTAEQEKTIRGQGVKDRDRKLEVYDLVKEAEKTNNSTRKPGKSSVQEGAENMRSQSPMRYKSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGCSKYVQSDLDsnagpgsssgsrasssVMAQQSLREQQDDEYLASLLADREKEMNALKEAESLQLSRDESQKKILEEEVVKLLSFGCLIYSPCSFVLKTTFLCYLKTLTV
Disordered region (IsUnstruct)
*********************VALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPY********************************************************************************************************************Y***************************************************************************************************************************FPANEWGGISSKELDEAVMLEAALFGEAATGCSKYV*******************************************************************ILEEEVVKLLSFGCLIYSPCSFVLKTTFLCYLKTL**
Disordered Region (DISOPRED)
********VDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH*******************S**************************PSSLLDPNYRRSLLNE**************TGGVMGL***************************SYHGRDTRDNLLRDNGSHFYGNDIEEQMI**********************************************************************************************************************EWGGISSKELDEAVMLEAALFGEAATGC*******************************************************************************LLSFGCLIYSPCSFVLKTTFLCYLKTLTV
Disordered Region (DISEMBL)
**********TFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYPSPGLSSLDMNSNNIQARPSRLSQLFSAARSFRPSSLLDPNYRRSLLNELSASLTSPQPVASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRDTRDNLLRDNGSHFYGNDIEEQMIQAAI**************QRELELPEDDEFSRAISLSLKTAEQEKTIRGQGVKDRDRKLEVYDLVKEA*****************************YKSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGCSKYVQSDL**************************QQDDEYLASLLADREKEMNALKEAESLQLSRDESQKKILEEEVVKLLSFGCLIYSPCSFVLKTTFLCYLKTLTV
Disordered Region (DISPRO)
****TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNP*********PGLSSLDMNSNNIQARPSRLSQLFSAARSFRPSSLLDPNYRRSLLNELSASLTSPQPVASHTGGVMGLPAEFSSWN******GQMPYDYDGARTSSYHGRDTRDNLLRDNGSHFYGNDIEEQMIQAAIEASKQ****************************************************************************************************************GISSKELDEAVMLEAALFGEAATGCSKYVQ******AGPGSSSGSRASSSVMAQQSLREQQDDEYLASLLADREKEMNALKEAESLQLSRDESQKKILEEEVVKLLSFGCLIYSPCSFVLKTTFLCYLKTLT*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYPSPGLSSLDMNSNNIQARPSRLSQLFSAARSFRPSSLLDPNYRRSLLNELSASLTSPQPVASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRDTRDNLLRDNGSHFYGNDIEEQMIQAAIEASKQEASSGSGVVQRELELPEDDEFSRAISLSLKTAEQEKTIRGQGVKDRDRKLEVYDLVKEAEKTNNSTRKPGKSSVQEGAENMRSQSPMRYKSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGCSKYVQSDLDSNAGPGSSSGSRASSSVMAQQSLREQQDDEYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVVKLLSFGCLIYSPCSFVLKTTFLCYLKTLTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
255541468	501	ara4-interacting protein, putative [Rici	0.838	0.734	0.458	2e-75
297742567	738	unnamed protein product [Vitis vinifera]	0.874	0.520	0.363	1e-49
225426846	624	PREDICTED: uncharacterized protein LOC10	0.874	0.615	0.365	2e-49
42570051	469	UBX domain-containing protein [Arabidops	0.733	0.686	0.382	3e-49
224058601	586	predicted protein [Populus trichocarpa]	0.899	0.674	0.343	5e-49
110743309	469	hypothetical protein [Arabidopsis thalia	0.733	0.686	0.382	9e-49
356563214	597	PREDICTED: uncharacterized protein LOC10	0.858	0.631	0.361	5e-48
297809459	563	hypothetical protein ARALYDRAFT_489990 [	0.867	0.676	0.334	8e-48
297810095	470	UBX domain-containing protein [Arabidops	0.722	0.674	0.378	6e-47
356514058	598	PREDICTED: uncharacterized protein LOC10	0.851	0.625	0.354	6e-47

>gi|255541468|ref|XP_002511798.1| ara4-interacting protein, putative [Ricinus communis] gi|223548978|gb|EEF50467.1| ara4-interacting protein, putative [Ricinus communis]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 195/425 (45%), Positives = 249/425 (58%), Gaps = 57/425 (13%)

Query: 1   MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHR---DIL------- 50
           M RPT +++DTF  ITGAS+S A++KLEEYGGNL+EA+NA+F E  R   DIL       
Sbjct: 1   MARPTADSIDTFMRITGASESHAVRKLEEYGGNLDEAINAHFGEVERNLYDILLKGNILC 60

Query: 51  -NPTAVAYPYPSPGLSSLDMNSNNIQARPSRLSQLFSAARSFRPSSLLDPNYRRSLLNEL 109
            NP + A P+     +      N  Q     +  L SAARSF+PS LLDP+YRR+LLN++
Sbjct: 61  TNPLSTASPH-----NDFVNTRNQTQDGSRGILPLLSAARSFKPSLLLDPSYRRNLLNQI 115

Query: 110 SASL-TSPQPVASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRDTRDNLL 168
            +S+ TS +P+ + TG        F++  +QPYHSG MP       TS  H      N+ 
Sbjct: 116 GSSVFTSREPLYTQTG-------RFNNGYQQPYHSGPMPALEHADGTSLSHDHQFHGNVS 168

Query: 169 RDNGSHFYGNDIEEQMIQAAIEASKQEASSGSGVVQRELELPEDDEFSRAISLSLKTAEQ 228
           R + ++ +GNDIEEQMIQ AIEASKQE  SG    QR   L  DDE   AISLSLKTA+Q
Sbjct: 169 RVHETNLHGNDIEEQMIQFAIEASKQEELSGHQ--QRHSHL-ADDELYHAISLSLKTAKQ 225

Query: 229 EKTIRGQGVKDRDRKLEVYDLVKEAEKTNNSTRKPGKSSVQEGAENMRSQSPMRYKSEHD 288
           E+ IR   ++D+ ++L V +    AEKTN+S  +PG SS Q GAE+   QS         
Sbjct: 226 EEAIRELTLEDQ-KQLVVRNSTGRAEKTNDSRWQPGSSSFQGGAEDFHEQS--------- 275

Query: 289 VNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGCS----KYVQSDLDSNAG 344
                           WGGISSKELDEA++LEAA+F E + G S        +  D   G
Sbjct: 276 ---------------LWGGISSKELDEAILLEAAIFAETSEGTSYQRAPQPPTTPDKIKG 320

Query: 345 P-GSSSGSRASSSVMAQQSLREQQDDEYLASLLADREKEMNALKEAESLQLSRDESQKKI 403
           P       R S SV+ Q+ L EQQDDEYLASLLADREKEMNALKE E+  +   ES  K+
Sbjct: 321 PYPQKVHCRPSPSVVEQRLLWEQQDDEYLASLLADREKEMNALKERETSYVKEGESPNKM 380

Query: 404 LEEEV 408
           L+E+ 
Sbjct: 381 LDEKA 385

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742567|emb|CBI34716.3| unnamed protein product [Vitis vinifera]

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 183/504 (36%), Positives = 241/504 (47%), Gaps = 120/504 (23%)

Query: 1   MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYP 60
           M  P QE +DTF SITGAS++VAL+KLEE+GG+LNEAVNA+FSEG R+I   T++A    
Sbjct: 115 MATPNQEAIDTFISITGASEAVALRKLEEHGGDLNEAVNAHFSEGDRNIARETSIA---- 170

Query: 61  SPGLSSLDMNSNNIQARPSRLSQLFSAARSFRPSSLLDPNY----RRSLLNELSASLTSP 116
           +P    +D++           S L SAA +  P SLLDP       RSL +   + LT  
Sbjct: 171 APQSDFMDIDDPIPVESQGPASSLLSAATNLNPLSLLDPLLDPSSNRSLFDS-DSDLTRR 229

Query: 117 QPVASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYH----------------- 159
            P  SH   V  +P EF   NE  + SG  P   D   T+  H                 
Sbjct: 230 GPSVSHPREVREIPIEFKDGNETSHQSGSTPTIEDVTDTAPAHEPEIRGAVMTVDEDDDD 289

Query: 160 ----------GRDT-RDNLLRD--------------NGSHFYGNDIEEQMIQAAIEASKQ 194
                     G++  RD+ L D              N    Y NDIEE+M++AAIEASK+
Sbjct: 290 IPTAPSAQGAGQNAQRDDTLGDSSHDGRSRPIVPGFNNLPDYANDIEEEMVRAAIEASKR 349

Query: 195 EASSG--------------SGVVQRELELPEDDEFSRAISLSLKTAEQEKTIRGQGVK-- 238
           E   G               G  QR   L ED   +RA+SLSLKTAEQEK +R QG +  
Sbjct: 350 EVEEGYSNQQFGAHNELSNPGPQQRPSHL-EDAALARAVSLSLKTAEQEKALREQGGEVG 408

Query: 239 ----DRDRKLEVYDLVKEAEKTNN----------STRKP----GKSSVQEGAENMRSQ-- 278
                 D   EV +L +E    N           ++ +P    G SS+Q+ AE++  Q  
Sbjct: 409 ASELGADSPAEVEEL-RELPAPNGRQGFGSLDKVTSSRPKLEAGSSSIQDEAEDIDEQPL 467

Query: 279 ------------------------SPMRYKSEHDVNVHTQCSKDAFPANEWGGISSKELD 314
                                   SP+      +V      +  AF ++EWGGISS+E D
Sbjct: 468 VRNRTRRMSSGSVESVKETEAIEVSPVSSPRRQNVGADPDPNGTAFHSDEWGGISSEEHD 527

Query: 315 EAVMLEAALFG----EAATGCSKYVQSDLDSNAGPGSSSGSRASSSVMAQQSLREQQDDE 370
           EAVMLEAALFG        G  +++   LD N  P +      S S+ AQ+ +REQQDD 
Sbjct: 528 EAVMLEAALFGGIPDHFGFGPHRFMHPGLDRNFPPIARP---PSPSLAAQRLIREQQDDA 584

Query: 371 YLASLLADREKEMNALKEAESLQL 394
           YLASL AD+EKE+ A +EAE+ +L
Sbjct: 585 YLASLQADQEKELKAKEEAEARRL 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426846|ref|XP_002276758.1| PREDICTED: uncharacterized protein LOC100251323 [Vitis vinifera]

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 184/504 (36%), Positives = 241/504 (47%), Gaps = 120/504 (23%)

Query: 1   MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYP 60
           M  P QE +DTF SITGAS++VAL+KLEE+GG+LNEAVNA+FSEG R+I   T++A    
Sbjct: 1   MATPNQEAIDTFISITGASEAVALRKLEEHGGDLNEAVNAHFSEGDRNIARETSIA---- 56

Query: 61  SPGLSSLDMNSNNIQARPSRLSQLFSAARSFRPSSLLDPNY----RRSLLNELSASLTSP 116
           +P    +D++           S L SAA +  P SLLDP       RSL +  S  LT  
Sbjct: 57  APQSDFMDIDDPIPVESQGPASSLLSAATNLNPLSLLDPLLDPSSNRSLFDSDS-DLTRR 115

Query: 117 QPVASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYH----------------- 159
            P  SH   V  +P EF   NE  + SG  P   D   T+  H                 
Sbjct: 116 GPSVSHPREVREIPIEFKDGNETSHQSGSTPTIEDVTDTAPAHEPEIRGAVMTVDEDDDD 175

Query: 160 ----------GRDT-RDNLLRD--------------NGSHFYGNDIEEQMIQAAIEASKQ 194
                     G++  RD+ L D              N    Y NDIEE+M++AAIEASK+
Sbjct: 176 IPTAPSAQGAGQNAQRDDTLGDSSHDGRSRPIVPGFNNLPDYANDIEEEMVRAAIEASKR 235

Query: 195 EASSG--------------SGVVQRELELPEDDEFSRAISLSLKTAEQEKTIRGQGVK-- 238
           E   G               G  QR   L ED   +RA+SLSLKTAEQEK +R QG +  
Sbjct: 236 EVEEGYSNQQFGAHNELSNPGPQQRPSHL-EDAALARAVSLSLKTAEQEKALREQGGEVG 294

Query: 239 ----DRDRKLEVYDLVKEAEKTNN----------STRKP----GKSSVQEGAENMRSQ-- 278
                 D   EV +L +E    N           ++ +P    G SS+Q+ AE++  Q  
Sbjct: 295 ASELGADSPAEVEEL-RELPAPNGRQGFGSLDKVTSSRPKLEAGSSSIQDEAEDIDEQPL 353

Query: 279 ------------------------SPMRYKSEHDVNVHTQCSKDAFPANEWGGISSKELD 314
                                   SP+      +V      +  AF ++EWGGISS+E D
Sbjct: 354 VRNRTRRMSSGSVESVKETEAIEVSPVSSPRRQNVGADPDPNGTAFHSDEWGGISSEEHD 413

Query: 315 EAVMLEAALFG----EAATGCSKYVQSDLDSNAGPGSSSGSRASSSVMAQQSLREQQDDE 370
           EAVMLEAALFG        G  +++   LD N  P +      S S+ AQ+ +REQQDD 
Sbjct: 414 EAVMLEAALFGGIPDHFGFGPHRFMHPGLDRNFPPIARP---PSPSLAAQRLIREQQDDA 470

Query: 371 YLASLLADREKEMNALKEAESLQL 394
           YLASL AD+EKE+ A +EAE+ +L
Sbjct: 471 YLASLQADQEKELKAKEEAEARRL 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570051|ref|NP_680549.3| UBX domain-containing protein [Arabidopsis thaliana] gi|66792624|gb|AAY56414.1| At4g00752 [Arabidopsis thaliana] gi|332656530|gb|AEE81930.1| UBX domain-containing protein [Arabidopsis thaliana]

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 201/363 (55%), Gaps = 41/363 (11%)

Query: 1   MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYP 60
           M  PT++ + ++ SITGAS+S+A+Q+LEE+G NL EA+NA+F +  R I + +++     
Sbjct: 1   MVSPTRDAIQSYMSITGASESLAIQRLEEHGNNLPEAINAHFRDVERSIYDDSSLDT--- 57

Query: 61  SPGLSSLDMNSNNIQAR-------------PSRLSQLFSAARSFRPSSLLDPNYRRSLLN 107
               S  ++  +N   R             P  L  + SAAR+FRPS LLDPNYRR++L 
Sbjct: 58  ---RSDYNVVEDNNHVRGSETRPVNESRPVPGALPSILSAARAFRPSLLLDPNYRRNILR 114

Query: 108 ELSASLTSPQP-VASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDG-ARTSSYHGRDTRD 165
           +LS S  S  P  +SHTG V G PA  S+W         +    DG AR S  +G     
Sbjct: 115 QLSGSALSGSPSPSSHTGEVTGFPAH-STWGNDHTRPPGLGAVGDGYARHSPSYGSQVHG 173

Query: 166 NLLRDNGSHFYGNDIEEQMIQAAIEASKQEASSG-------------SGVVQRELELPED 212
              RD  S  + ND EE+MI+AAIEASK++   G             S +  RE+   ED
Sbjct: 174 GTHRDADSPVHSNDAEEEMIRAAIEASKKDFQEGRLNTRYSLDNNPSSVLSPREVINRED 233

Query: 213 DEFSRAISLSLKTAEQEKTIRGQGVKDRDRKLEVYDLVKEAEKTNNSTR-KPGKSSVQEG 271
           ++ +RAIS+SL+  E E  +R Q  +   + +E +D  +    TN STR +PG SSVQ+ 
Sbjct: 234 EDIARAISMSLEMEEHESVLRDQLAEFMPQSVEHHDPCQ--SNTNESTRYQPGSSSVQDN 291

Query: 272 AENMRSQSPMRYKSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGC 331
            E+M  + P+   S+H  ++  Q S+ ++P  EWGGI SKEL EA+MLE A+FG  A   
Sbjct: 292 REDMNQKQPINSSSQHRHDL--QNSEGSYP-EEWGGIPSKELQEAIMLEKAIFGGVANES 348

Query: 332 SKY 334
           + +
Sbjct: 349 ASH 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058601|ref|XP_002299560.1| predicted protein [Populus trichocarpa] gi|222846818|gb|EEE84365.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 163/475 (34%), Positives = 234/475 (49%), Gaps = 80/475 (16%)

Query: 1   MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYP 60
           M RP QE +DTF SITG ++  A+ KLEE+GG+LN AVNA+FSEG R    P+  A   P
Sbjct: 1   MARPNQEAIDTFISITGVAEDAAVLKLEEHGGDLNAAVNAHFSEGDRSA-RPSIHA---P 56

Query: 61  SPGLSSLDMNSNNIQARPSRLSQ-LFSAARSFRPSSLLDPNYRRSLLNELSASLTSPQPV 119
              L  +D +   +   P R  Q L S + +     LLDP ++R +L    +  T+  P 
Sbjct: 57  QDDLMDIDGDPIEVAPPPRRNPQPLLSESVAMNRFPLLDPRFQRGVLG-TGSDFTNQAPF 115

Query: 120 ASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRD----------------- 162
            S    V  +P E    +E   HSG  P   D   T    G D                 
Sbjct: 116 VSQPREVREIPIEVKDGSEASGHSGHAPIIEDVTGTEHAQGPDIQGTVIIEDDDNDDIST 175

Query: 163 -----------TRDNLLRDNGSHF-----YGNDIEEQMIQAAIEASKQEAS--SGSGVVQ 204
                      +R   LR +   F     Y NDIEE+M++AAIEASK+E    + +G  Q
Sbjct: 176 YLNARATQRDSSRAGHLRPSAPEFDNLPYYSNDIEEEMVRAAIEASKREVQELTETGPQQ 235

Query: 205 RELELPEDDEFSRAISLSLKTAEQEKTIR---GQGVKDRDRKLEVYDLVKEAEKTNNSTR 261
           R+ ++ ED E    +SLSL+ A QEK +R   G+ ++++++  EV   ++++     +  
Sbjct: 236 RQPQV-EDAELEHVVSLSLRAALQEKALREQRGKALREQEKASEVG--IRKSYNGLLTQY 292

Query: 262 KP--GKSSVQEGAENMRSQSPMRYKSEH--------------------------DVNVHT 293
           +P  G SS+ + AE++  Q  +R++S                            ++  H 
Sbjct: 293 RPEAGSSSIHDEAEDVEEQPLIRHRSRQTSSGSMESAREAGVVEASPPSSPGRSNIGSHP 352

Query: 294 QCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGCS---KYVQSDLDSNAGP-GSSS 349
             + DAF ++EWGGISS+E DEAVMLEAA+FG    G      Y       N        
Sbjct: 353 LHNVDAF-SDEWGGISSEEHDEAVMLEAAMFGGIPEGTGYRLPYAPHHFMQNENNYPRPV 411

Query: 350 GSRASSSVMAQQSLREQQDDEYLASLLADREKEMNALKEAESLQLSRDESQKKIL 404
               S S+ AQ+ +REQQDDEYLASL ADREKEM A++EAE+ +L  + ++K  L
Sbjct: 412 PRPPSPSLQAQRIIREQQDDEYLASLAADREKEMKAIEEAEAHRLQEEVARKAAL 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743309|dbj|BAE99543.1| hypothetical protein [Arabidopsis thaliana]

 Score =  200 bits (509), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 199/363 (54%), Gaps = 41/363 (11%)

Query: 1   MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYP 60
           M  PT++ + ++ SITGAS+S+A+Q+LEE+G NL EA+NA+F +  R I + +++     
Sbjct: 1   MVSPTRDAIQSYMSITGASESLAIQRLEEHGNNLPEAINAHFRDVERSIYDDSSLDT--- 57

Query: 61  SPGLSSLDMNSNNIQAR-------------PSRLSQLFSAARSFRPSSLLDPNYRRSLLN 107
               S  ++  +N   R             P  L  + SAAR+FRPS LLDPNYRR++L 
Sbjct: 58  ---RSDYNVVEDNNHVRGSETRPVNESRPVPGALPSILSAARAFRPSLLLDPNYRRNILR 114

Query: 108 ELSASLTSPQP-VASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDG-ARTSSYHGRDTRD 165
           +LS S  S  P  +SHTG V G PA  S+W         +    DG AR S  +G     
Sbjct: 115 QLSGSALSGSPSPSSHTGEVTGFPAH-STWGNDHTRPPGLGAVGDGYARHSPSYGSQVHG 173

Query: 166 NLLRDNGSHFYGNDIEEQMIQAAIEASKQEASSG-------------SGVVQRELELPED 212
              RD  S  + ND EE+MI+AAIEASK+    G             S +  RE+   ED
Sbjct: 174 GTHRDADSPVHSNDAEEEMIRAAIEASKKNFQEGRLNTRYSLDNNPSSVLSPREVINRED 233

Query: 213 DEFSRAISLSLKTAEQEKTIRGQGVKDRDRKLEVYDLVKEAEKTNNSTR-KPGKSSVQEG 271
           ++ +RAIS+SL   E E  +R Q  +   + +E +D  +    TN STR +PG SSVQ+ 
Sbjct: 234 EDIARAISMSLGMEEHESVLRDQLAEFMPQSVEHHDPCQ--SNTNESTRYQPGSSSVQDN 291

Query: 272 AENMRSQSPMRYKSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGC 331
            E+M  + P+   S+H  ++  Q S+ ++P  EWGGI SKEL EA+MLE A+FG  A   
Sbjct: 292 REDMNQKQPINSSSQHRHDL--QNSEGSYP-EEWGGIPSKELQEAIMLEKAIFGGVANES 348

Query: 332 SKY 334
           + +
Sbjct: 349 ASH 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563214|ref|XP_003549859.1| PREDICTED: uncharacterized protein LOC100777000 isoform 1 [Glycine max]

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 173/479 (36%), Positives = 222/479 (46%), Gaps = 102/479 (21%)

Query: 1   MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDIL----NPTAVA 56
           M RP QE V+TF SITG +++VALQKLEE+GGNLNEAVNA+FSEG R++     N +AV 
Sbjct: 1   MARPNQEAVETFVSITGLTEAVALQKLEEHGGNLNEAVNAHFSEGDRNLTTGSRNSSAV- 59

Query: 57  YPYPSPGLSSLDMNSNNIQARPSRLSQLFSAARSFRPSSLLDPNYRRSLLNELSASLTSP 116
             +P      +D++  +    P   S L + A +  P SLLDP   R +      S T  
Sbjct: 60  --FPQDDF--MDIDDQHDAGIPRIPSLLPALAANVNPFSLLDPTIGRGIFGTRFDS-TIE 114

Query: 117 QPVASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRDTR------------ 164
            P  +H   V  +P E    ++    +G +P   D   T   HG D              
Sbjct: 115 APFVTHPREVREIPIEVKDGSQSTPQAGHVPSIEDVTGTVDAHGPDIHGTVIIDDEDDDD 174

Query: 165 -------------DNLLRDNGSHF--------------YGNDIEEQMIQAAIEASKQEAS 197
                          +L D   +               Y NDIEE+MI+AAIEASKQEA 
Sbjct: 175 IPPAQIAHQDEQTQKILADTSLNSSVRPSAPESENLPDYSNDIEEEMIRAAIEASKQEAE 234

Query: 198 --------------SGSGVVQRELELPEDDEFSRAISLSLKTAEQEKTIRGQGVKDRDRK 243
                         S SG   R+  L ED E + A+SLSLKTAEQEK +R  G  D    
Sbjct: 235 ENYRNHKLDRQIDLSESGSQPRQSYL-EDPELAHAVSLSLKTAEQEKALRVHG-GDSGSP 292

Query: 244 LEVYDLVKEA---EKTNNSTRKPGKSSVQEGAENMRSQSPMRYKSEHDVNVHTQCSKD-- 298
                   EA   E T+N   + G  S  + AE++  Q  +R +S H  +  T   KD  
Sbjct: 293 TAGPSKSSEAGLGEVTSNGRLQAGSLSFHDEAEDVEEQPLVRNRSRHMSSGSTGLGKDVE 352

Query: 299 ---------------------------AFPANEWGGISSKELDEAVMLEAALFGEAATGC 331
                                      +FP +EWGGISS+E DEAVMLEAA+FG    G 
Sbjct: 353 LAEASTLPSTATVTATQDSSNPHHNGNSFP-DEWGGISSEEHDEAVMLEAAMFGGIPEGT 411

Query: 332 S---KYVQSDLDSNAGPGSSSGSR-ASSSVMAQQSLREQQDDEYLASLLADREKEMNAL 386
                Y   +   N G       R  S S+ AQ+ +REQQDDEYLASL ADREKE+ A+
Sbjct: 412 GYHYGYAPHEFMQNRGFNPRPQYRPPSPSLAAQRLIREQQDDEYLASLQADREKELKAM 470

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809459|ref|XP_002872613.1| hypothetical protein ARALYDRAFT_489990 [Arabidopsis lyrata subsp. lyrata] gi|297318450|gb|EFH48872.1| hypothetical protein ARALYDRAFT_489990 [Arabidopsis lyrata subsp. lyrata]

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 233/466 (50%), Gaps = 85/466 (18%)

Query: 1   MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYP 60
           M  P QE +DTF SITGAS++VALQKLEE+ G+LN+AVNAYF EG R++++   V     
Sbjct: 1   MATPNQEAIDTFISITGASEAVALQKLEEHRGDLNQAVNAYFGEGDRNVVSEAPV----- 55

Query: 61  SPGLSSLD-MNSNNIQARPSRLSQLFSAARSF-RPSSLLDPNYRRSLLNELSASLTSPQP 118
              +S  D M+ +++   P     +F+AAR+  RP SLLD ++ RS+ +  +  L    P
Sbjct: 56  --NISRDDEMDIDDVIPAPQSPLSMFNAARTMGRPFSLLDSDFARSIFD--NDPLMPRPP 111

Query: 119 VASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRDTRDNLLRD-------- 170
             SH   V  +P E    +     S   P   D   T+      T+  ++ D        
Sbjct: 112 FVSHPREVRQIPIEVKDSSGPSGRSSDAPTIEDVTETTHVQAPATQGTVIIDEESDDDIP 171

Query: 171 -----------------NGSHFYGNDIEEQMIQAAIEASKQEA--SSGSGVVQRELELPE 211
                            N +  Y NDIEE+MI+AAIEASK+EA  S+   + +R   + +
Sbjct: 172 FAPMGRSRQDRPAGSEANNNQDY-NDIEEEMIRAAIEASKKEAEGSNNPLLEERPPHVED 230

Query: 212 DDEFSRAISLSLKTAEQEKTIRGQGVKDRDRKLEVYDLV-----KEAEKTNNSTRKPGK- 265
           DD+ ++A+++SLK+AE+E  +R QG+     ++   ++      ++ +  N     P   
Sbjct: 231 DDDIAKAVTMSLKSAEEE-VLRNQGLMPSTSEIGTSEMAVAQGPQDTQALNGRLAAPSSP 289

Query: 266 ------------------------SSVQEGAENMRSQSPMRYKSEHDVNVHTQCSKDAFP 301
                                   S     A+  RS+SP     E   +++       FP
Sbjct: 290 FDDDSDDVDEQPLVRHRPRRAASGSLAPPNADRSRSESP----EEEGASINPAERGSGFP 345

Query: 302 ANEWGGISSKELDEAVMLEAALFG---EAATGCSKYVQSDLDSNAGPGSSSGSRASSSVM 358
           + EWGGISS+E DEAVMLEAA+FG   E       Y+     +   P        S S+ 
Sbjct: 346 S-EWGGISSEEHDEAVMLEAAMFGGIPETGYNHRPYIPPQPWAQPRP-------PSPSLT 397

Query: 359 AQQSLREQQDDEYLASLLADREKEMNALKEAESLQLSRDESQKKIL 404
           AQ+ +REQQDDEYLASL ADR+KEM ++++AE+ QL  + ++K  L
Sbjct: 398 AQRLIREQQDDEYLASLQADRDKEMKSIRDAEARQLDEETARKAFL 443

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810095|ref|XP_002872931.1| UBX domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318768|gb|EFH49190.1| UBX domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 135/357 (37%), Positives = 197/357 (55%), Gaps = 40/357 (11%)

Query: 1   MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYP 60
           M  PT++ + ++ SITGAS+S+A+Q+LEE+G NL EA+N++F +  R I + +++     
Sbjct: 1   MVIPTRDAIQSYMSITGASESLAIQRLEEHGNNLPEAINSHFRDVERSIYDDSSLE---- 56

Query: 61  SPGLSSLDMNSNNIQAR-------------PSRLSQLFSAARSFRPSSLLDPNYRRSLLN 107
               S  ++  +N   R             P  L  + SAAR+FRPS LLDPNYRR++  
Sbjct: 57  --TRSDYNVVEDNNHVRGIETRPVNEPRPVPGALPSILSAARAFRPSLLLDPNYRRNIFR 114

Query: 108 ELSASLTSPQPVAS-HTGGVMGLPAEFSSWNEQPYHSGQMPYDYDG-ARTSSYHGRDTRD 165
           +LS S  S  P  S HTG V G PA     N+Q +   ++    DG AR S  +G     
Sbjct: 115 QLSGSALSGSPSPSPHTGEVTGFPAHSMWGNDQTHPPPRLGEVGDGYARHSPSYGSQVHG 174

Query: 166 NLLRDNGSHFYGNDIEEQMIQAAIEASKQEASSG-------------SGVVQRELELPED 212
              RD  S  + ND EE+MI+AAIEASK++   G             S +  RE+   ED
Sbjct: 175 GTHRDAESPVHSNDAEEEMIRAAIEASKKDFQEGRHNTRYSLDNDPSSVLSPREVINRED 234

Query: 213 DEFSRAISLSLKTAEQEKTIRGQGVKDRDRKLEVYDLVKEAEKTNNSTR-KPGKSSVQEG 271
           ++ +RAIS+SL+  E E  +R Q  +   + +E +D  +     N STR +PG SSVQ+ 
Sbjct: 235 EDIARAISMSLEMEEHENALREQLAEFMPQSVEHHDPCQ--SNANESTRYQPGSSSVQDK 292

Query: 272 AENMRSQSPMRYKSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAA 328
            E+M+ + P+   S+H  ++  Q  + ++P  EWGGI SKEL EA+MLE ALF   A
Sbjct: 293 REDMKQKQPINTSSQHRHDL--QNVEASYP-EEWGGIPSKELHEAIMLEKALFSGVA 346

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514058|ref|XP_003525724.1| PREDICTED: uncharacterized protein LOC100784059 [Glycine max]

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 169/477 (35%), Positives = 221/477 (46%), Gaps = 103/477 (21%)

Query: 1   MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDIL----NPTAVA 56
           M RP QE V+TF SITG  ++VALQKLEE+GGNLNEAVNA+F+EG R++     N +AV 
Sbjct: 1   MARPNQEAVETFVSITGLPEAVALQKLEEHGGNLNEAVNAHFTEGDRNLTTGSHNSSAV- 59

Query: 57  YPYPSPGLSSLDMNSNNIQARPSRLSQLFSA-ARSFRPSSLLDPNYRRSLLNELSASLTS 115
             +P      +D++  +    P R+  L  A A +  P SLLDP   R +      S T 
Sbjct: 60  --FPQDDF--MDIDDEHDAEIPRRIPPLLPASAANVNPFSLLDPTIGRGIFGTRFDS-TV 114

Query: 116 PQPVASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRDTRDNLL------- 168
             P  +H   V  +P E    ++    +G +P   D       HG D    ++       
Sbjct: 115 EAPFVTHPREVREIPIEVKDGSQSTPQAGHVPSIEDVTGNVDAHGPDIHGTVIIDDEDDE 174

Query: 169 ---------RDNGSHF-----------------------YGNDIEEQMIQAAIEASKQEA 196
                    +D  +H                        Y NDIEE+MI+AAIEASK+EA
Sbjct: 175 NIPPAQIAHQDEQTHKILADTSLNSSARPSAPESENLPDYSNDIEEEMIRAAIEASKREA 234

Query: 197 S--------------SGSGVVQRELELPEDDEFSRAISLSLKTAEQEKTIRGQGVKDRDR 242
                          S SG   R+  L ED E + A+SLSLKTAEQEK ++ QG  D   
Sbjct: 235 EENYRNHKLGRQIDLSESGSQPRQSYL-EDPELAHAVSLSLKTAEQEKALQVQG-GDSGS 292

Query: 243 KLEVYDLVKEA---EKTNNSTRKPGKSSVQEGAENMRSQSPMRYKSEHDVNVHTQCSKD- 298
                    EA   E T+N   + G  S  + AE++  Q  +R +S H  +      KD 
Sbjct: 293 PTAGPSKSSEAGLGEMTSNGRLQAGSLSFHDEAEDVEEQPLVRNRSRHTSSGSAGLDKDV 352

Query: 299 ----------------------------AFPANEWGGISSKELDEAVMLEAALFGEAATG 330
                                       +FP +EWGGISS+E DEAVMLEAA+FG    G
Sbjct: 353 ELAEASTLPSTATVTATQDTSNPHHNGNSFP-DEWGGISSEEHDEAVMLEAAMFGGIPEG 411

Query: 331 CS---KYVQSDLDSNAGPGSSSGSR-ASSSVMAQQSLREQQDDEYLASLLADREKEM 383
                 Y   +   N G       R  S S+ AQ+ +REQQDDEYLASL ADREKE+
Sbjct: 412 TGYRYGYAPHEFMQNRGFNPRPQYRPPSPSLAAQRLIREQQDDEYLASLQADREKEL 468

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
TAIR|locus:504955540	469	AT4G00752 "AT4G00752" [Arabido	0.571	0.535	0.413	2e-40
TAIR|locus:2139787	564	SAY1 [Arabidopsis thaliana (ta	0.592	0.460	0.326	1.9e-37
TAIR|locus:2127198	525	AT4G23040 "AT4G23040" [Arabido	0.510	0.426	0.346	3.3e-29
CGD|CAL0002292	593	orf19.3135 [Candida albicans (	0.116	0.086	0.339	0.00069

TAIR|locus:504955540 AT4G00752 "AT4G00752" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 113/273 (41%), Positives = 154/273 (56%)

Query:    72 NNIQARPSRLSQLFSAARSFRPSSLLDPNYRRSLLNELSASLTSPQPV-ASHTGGVMGLP 130
             N  +  P  L  + SAAR+FRPS LLDPNYRR++L +LS S  S  P  +SHTG V G P
Sbjct:    79 NESRPVPGALPSILSAARAFRPSLLLDPNYRRNILRQLSGSALSGSPSPSSHTGEVTGFP 138

Query:   131 AEFSSWNEQPYHSGQMPYDYDG-ARTSSYHGRDTRDNLLRDNGSHFYGNDIEEQMIQAAI 189
             A  S+W         +    DG AR S  +G        RD  S  + ND EE+MI+AAI
Sbjct:   139 AH-STWGNDHTRPPGLGAVGDGYARHSPSYGSQVHGGTHRDADSPVHSNDAEEEMIRAAI 197

Query:   190 EASKQEASSG------------SGVVQ-RELELPEDDEFSRAISLSLKTAEQEKTIRGQG 236
             EASK++   G            S V+  RE+   ED++ +RAIS+SL+  E E  +R Q 
Sbjct:   198 EASKKDFQEGRLNTRYSLDNNPSSVLSPREVINREDEDIARAISMSLEMEEHESVLRDQL 257

Query:   237 VKDRDRKLEVYDLVKEAEKTNNSTR-KPGKSSVQEGAENMRSQSPMRYKSEHDVNVHTQC 295
              +   + +E +D  +    TN STR +PG SSVQ+  E+M  + P+   S+H  ++  Q 
Sbjct:   258 AEFMPQSVEHHDPCQS--NTNESTRYQPGSSSVQDNREDMNQKQPINSSSQHRHDL--QN 313

Query:   296 SKDAFPANEWGGISSKELDEAVMLEAALFGEAA 328
             S+ ++P  EWGGI SKEL EA+MLE A+FG  A
Sbjct:   314 SEGSYP-EEWGGIPSKELQEAIMLEKAIFGGVA 345

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2139787 SAY1 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 96/294 (32%), Positives = 141/294 (47%)

Query:     1 MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDILNPTAVAYPYP 60
             M  P QE +DTF SITGAS +VALQKLEE+ G+LN+AVNAYFSEG R+++         P
Sbjct:     1 MATPNQEAIDTFISITGASDAVALQKLEEHRGDLNQAVNAYFSEGDRNVVREA------P 54

Query:    61 SPGLSSLDMNSNNIQARPSRLSQLFSAARSF-RPS-SLLDPNYRRSLLNELSASLTSPQP 118
                   +D++ + I A  S LS +F+AAR+  RP  SLLD ++ R + +  S  L    P
Sbjct:    55 VNDDDEMDID-DVIPAPQSPLS-MFNAARTIGRPPFSLLDSDFARRVFD--SDPLMPRPP 110

Query:   119 VASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRDTRDNLLRDNGSHFYGN 178
               SH   V  +P E    +     S   P   D   T+   G  T        G+     
Sbjct:   111 FVSHPREVRQIPIEVKDSSGPSGRSSDAPTIEDVTETAHVQGPVTTQ------GTVIIDE 164

Query:   179 DIEEQMIQAAIEASKQEASSGSGVVQRELELPE-DDEFSRA-ISLSLKTAE-------QE 229
             + ++ +  A +  S+Q+  +GS       +  + ++E  RA I  S K AE       +E
Sbjct:   165 ESDDDIPFAPMGRSRQDRPAGSVANNNNQDYNDIEEEMIRAAIEASKKEAEGSSNPLLEE 224

Query:   230 KTIRGQGVKDRDRKLEVYDLVKEAEKTNNSTRKPG-KSSVQE-GAENMRS-QSP 280
             + +  +   D D  + V   +K AE+     R  G K+S  E GA  + + Q P
Sbjct:   225 RPLHMED--DDDIAIAVTMSLKSAEE--EVLRSQGYKASTSEIGASAVTAAQGP 274

GO:0005737 "cytoplasm" evidence=ISM

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2127198 AT4G23040 "AT4G23040" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 3.3e-29, Sum P(2) = 3.3e-29
 Identities = 89/257 (34%), Positives = 129/257 (50%)

Query:   170 DNGSHFYGNDIEEQMIQAAIEASKQEASSG---SGVVQ---RELELPE-------DDEFS 216
             +N  H+  NDIEEQ+I+AAIEASK E       S  VQ   RE+   E       + E S
Sbjct:   172 NNMQHY--NDIEEQIIRAAIEASKMETGDDVTKSVTVQSAEREVLRSEGWKASSSEREAS 229

Query:   217 RAISLSLKTAEQEKTIR-----GQGVKDRDRKLEVYDLVKEAEKTNNSTRKPGKSSVQEG 271
               +S+ ++   +    R          D D   +  D V+E E+   S R P + +V   
Sbjct:   230 EMVSIPVQQGSRASNGRFAAPSSLSEDDDDDDDDDPDYVEEEEEPLVSHR-P-RRAVSGS 287

Query:   272 AENMRSQSPMRYKSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGC 331
               ++    P   ++E D  +H+  + + FP+ EWGGISS+E DEA+MLEAA+FG  +   
Sbjct:   288 RSSLNDDLPRSPEAE-DATIHSPGAGNGFPS-EWGGISSEEHDEAIMLEAAMFGGISE-- 343

Query:   332 SKYVQSDLDXXXXXXXXXXXXXXXXVMAQQSLREQQDDEYLASLLADREK-EMNALKEAE 390
             S+Y                      + AQ+ +REQQDDEYLASL ADR K E   L+E  
Sbjct:   344 SEYGVP----YAHYPQRTQRPPSPSLTAQRLIREQQDDEYLASLEADRVKAEARRLEEEA 399

Query:   391 SLQLSRDESQKKILEEE 407
             +   + +E+++K  EEE
Sbjct:   400 ARVEAIEEAKRK--EEE 414

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

CGD|CAL0002292 orf19.3135 [Candida albicans (taxid:5476)]

 Score = 77 (32.2 bits), Expect = 0.00069, Sum P(3) = 0.00069
 Identities = 18/53 (33%), Positives = 34/53 (64%)

Query:   361 QSLREQQDDEYLASLLADREKEMNALKEAESLQLSRDESQKKILEEEVVKLLS 413
             + +R++QDD YL SL  D+ K+   L+E  + +L+  +SQ +  +  ++KL+S
Sbjct:   400 RQIRQEQDDAYLRSLQQDKIKKEMRLQEENAQKLAEQKSQLR--QYYLLKLIS 450

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0000837 "Doa10p ubiquitin ligase complex" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0034389 "lipid particle organization" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	439
KOG1363	460	consensus Predicted regulator of the ubiquitin pat	99.92
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	99.33
KOG1364	356	consensus Predicted ubiquitin regulatory protein,	96.6
PF03943	51	TAP_C: TAP C-terminal domain; InterPro: IPR005637	96.36
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	95.88
smart00804	63	TAP_C C-terminal domain of vertebrate Tap protein.	95.17
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	95.09
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	94.8
PRK06369	115	nac nascent polypeptide-associated complex protein	92.98
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	92.3
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	92.12
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	90.8
smart00726	26	UIM Ubiquitin-interacting motif. Present in protea	89.49
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	89.29
PF02809	18	UIM: Ubiquitin interaction motif; InterPro: IPR003	87.44
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	86.44
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	86.04
PF02809	18	UIM: Ubiquitin interaction motif; InterPro: IPR003	83.94
smart00726	26	UIM Ubiquitin-interacting motif. Present in protea	83.58

>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]

Probab=99.92  E-value=5.3e-25  Score=225.55  Aligned_cols=342  Identities=17%  Similarity=0.087  Sum_probs=221.2

Q ss_pred             hCCChHHHHHHhhhcCCccCCCCCCCCCCCCCCCCccccCCCCCCCCCCcccchhhhhhhcC-CCCCCCChhhhhhhhhc
Q 013613           30 YGGNLNEAVNAYFSEGHRDILNPTAVAYPYPSPGLSSLDMNSNNIQARPSRLSQLFSAARSF-RPSSLLDPNYRRSLLNE  108 (439)
Q Consensus        30 h~wdL~~AVNAYy~~~~R~~~~~~~~p~~~~~dD~~~mdid~~~~~~~~~~~~~~~~aa~~~-~Pf~LLDP~f~r~lfd~  108 (439)
                      ++|||..||+.++...+-... ..   |+..++-...+++++..+.       ++.+.-..+ +||.++||.|...++++
T Consensus         2 ~~~d~~~~i~~~~~~~~~~~~-e~---~~~~~~~~~~~~~~~~~~~-------~~~~~r~~~~~~~~~vd~~~~~r~~~~   70 (460)
T KOG1363|consen    2 ANWDLVEAIEGVLPQEDGALS-EE---PMGEPGQNDDEDANQEAPP-------PLRPRRTIFADPFPVVDPDFNYRDDNV   70 (460)
T ss_pred             ccHhHHHHHhhcccccCcccc-cc---cccCCCccccccccCCCCC-------ccCCcccccCCccccccchhcccccCC
Confidence            579999999999888773332 11   1222222211444422222       112222222 99999999998888883


Q ss_pred             ccCCCCCCCCCCCCCCCccccCccccCCCCCCCCCCCCCccccCCcccccCCCCcccceEecCCCC--------------
Q 013613          109 LSASLTSPQPVASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRDTRDNLLRDNGSH--------------  174 (439)
Q Consensus       109 ~~s~~~~r~p~vshPrevreiPiEvkd~n~~~~~sg~~p~iedvt~t~~a~gp~v~gtvi~D~~~~--------------  174 (439)
                        ... .|+++|.|+.+++.+++.+++++.+.+++...++++||+-+.+.|+| .++.++.++.+.              
T Consensus        71 --~~~-~~~~~v~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~s~p~~~~~~~  146 (460)
T KOG1363|consen   71 --DVS-PRPNTVGESKEIRSNEGGVPSSNGLLGGWSDNRTTEDVLSLALSLLP-LQSIVGGDPSSGDNIVSTPQGDSRET  146 (460)
T ss_pred             --Ccc-cCCCcccccceeeccCCCccccccccccccccccccccchhhhhcCc-hhhccccCCCCCCccccCCcchHHHH
Confidence              222 89999999999999999999999999999999999999999999999 888888888310              


Q ss_pred             -------CCCCC----hHHHHHHHHHHHhhhhhhcCCCCcccccCCCCchHHHHHhhhchhHHHHHHHhhhcCcccCcch
Q 013613          175 -------FYGND----IEEQMIQAAIEASKQEASSGSGVVQRELELPEDDEFSRAISLSLKTAEQEKTIRGQGVKDRDRK  243 (439)
Q Consensus       175 -------~y~ND----iEeemiRaAIEASK~eaee~~~~~q~~~~~~eDdDLakAIsLS~ee~E~ek~lr~q~~~~~~~~  243 (439)
                             .|+-+    -.|-+.-++.+|++++ -+..+.----.++.                                 
T Consensus       147 f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~-~~~~~~l~~~~~~~---------------------------------  192 (460)
T KOG1363|consen  147 FVDNFGDRYGSELPSFYTDVLRNAFLEAFDRE-SEARKLLAIYLHDD---------------------------------  192 (460)
T ss_pred             HHHHHHHhcCCCCCccchhHHHHHHHHHHhhh-hhhheeeEEecCCC---------------------------------
Confidence                   33222    2456666777777776 33322111111111                                 


Q ss_pred             hhhhhhhhhhhhccCCCCCCCCCCccccccccccCCCCccCCc-------------------CccCCCCCCCCCCCCCCC
Q 013613          244 LEVYDLVKEAEKTNNSTRKPGKSSVQEGAENMRSQSPMRYKSE-------------------HDVNVHTQCSKDAFPANE  304 (439)
Q Consensus       244 ~~~~~~~~~~~~~~n~r~~~~~~~~qd~~edveeqplvr~rsr-------------------~~~~~~~q~~g~~fp~~E  304 (439)
                                .+..+..........+...+.+.+++|+.++..                   ....++....++.|| ..
T Consensus       193 ----------~~~~~~~F~~~iL~~e~v~~~l~~~~llw~~dvt~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP-~~  261 (460)
T KOG1363|consen  193 ----------KSDDTNVFCGQILCNEAVVDYLRENFLLWGWDVTESENLLVFNSLLNRSISSPAAVTNKASKSERFP-LV  261 (460)
T ss_pred             ----------CcccHHHHHHhhhhhHHHHHHHhhceeeecccccCchhhHHHHHHhhcccchhhhhhcchhhcccCc-hh
Confidence                      011111222222333333344445555555543                   122244444678999 99


Q ss_pred             cCCCchhhhhHHHHHHHHHhcccCCCCCccc-ccCCCCCCCCCCCCCCCCCchHHHHHHHHHhh-hHHHHHHHHhhHHHH
Q 013613          305 WGGISSKELDEAVMLEAALFGEAATGCSKYV-QSDLDSNAGPGSSSGSRASSSVMAQQSLREQQ-DDEYLASLLADREKE  382 (439)
Q Consensus       305 WGGIss~e~dea~mleaamfggipe~~~~y~-~~~~~~~~~~~~~~~~~psps~~aq~~LR~qQ-DeaYlaSL~ADqEKe  382 (439)
                      |++|.++.++|++|+..+|+|++..-  +|. .++..   -....+.+++.+.+.++|.++++| |++|++||+||+.|+
T Consensus       262 ~iv~~~~~~~Ell~~l~g~~~~~e~~--~~~~~~~~~---~~~~~q~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr~r~  336 (460)
T KOG1363|consen  262 RIVIGSRSPEELLRYLQGVTGVDEEM--TLLLVAFEE---EERRLQMRRSEQDEREARLALEQEQDDEYQASLEADRVRE  336 (460)
T ss_pred             hhhhcCCCHHHHHHHHHhcCCchHHH--HHHHhhhhh---hhHHHhhcccchhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999884  333 11110   011167788999999999888776 999999999999993


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhh--h----------------ceeEEEeeCCCceeeeeeeeeecccc
Q 013613          383 MNALKEAESLQLSRDESQKKILEEEVVKL--L----------------SFGCLIYSPCSFVLKTTFLCYLKTLT  438 (439)
Q Consensus       383 ~k~~~e~E~~~~~eee~~~k~~ee~~~k~--~----------------s~~~~~~~p~~~~~~~~f~~~~~~~~  438 (439)
                      ..+.+.++..++  +.+|+..+||++...  +                ..++.|++|+|+|+.|||+.-.|+.+
T Consensus       337 ~e~e~~~e~~r~--e~er~~~~ee~e~~R~~l~~es~lp~EP~a~~~~~~~l~iR~P~G~r~~RrF~~s~~~q~  408 (460)
T KOG1363|consen  337 AEAEQAAEEFRL--EKERKEEEEERETARQLLALESSLPPEPSASEEEAITVAIRLPSGTRLERRFLKSDKLQI  408 (460)
T ss_pred             HHHHHhhHHHHH--hhhhhhHHHHHHHHHHHHhhhccCCCCCCcCcccceeeEEECCCCCeeeeeeecccchhH
Confidence            333333333332  222222222222222  1                78999999999999999998777643

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=99.33  E-value=2.1e-12  Score=93.62  Aligned_cols=41  Identities=49%  Similarity=0.733  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      ++.|.+||+|||+++.+|++||+.++|||+.||+.||.+++
T Consensus         1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~~~~   41 (43)
T PF14555_consen    1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFDDGE   41 (43)
T ss_dssp             HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred             CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            57899999999999999999999999999999999999876

>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0045  Score=63.53  Aligned_cols=46  Identities=26%  Similarity=0.341  Sum_probs=41.1

Q ss_pred             cHHHHHHHHHhhC-CCHHHHHHHHHHhCCChHHHHHHhhhcCCccCC
Q 013613            5 TQETVDTFTSITG-ASQSVALQKLEEYGGNLNEAVNAYFSEGHRDIL   50 (439)
Q Consensus         5 ~~eaIqQFMsITG-ASeavA~qyLEeh~wdL~~AVNAYy~~~~R~~~   50 (439)
                      ..+.+.+||.||+ .+...|.+||+..+|||+.|||=||..+.-...
T Consensus         6 ~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~   52 (356)
T KOG1364|consen    6 QRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQV   52 (356)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccc
Confidence            4566899999999 999999999999999999999999999885444

>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1)

Probab=96.36  E-value=0.0026  Score=48.53  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE   44 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~   44 (439)
                      ++.|.+|+..||....=+.+.|++.+||++.|+..|-.-
T Consensus         1 q~mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l   39 (51)
T PF03943_consen    1 QEMVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFEEL   39 (51)
T ss_dssp             HHHHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            478999999999999999999999999999999999543

Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=95.88  E-value=0.017  Score=40.62  Aligned_cols=35  Identities=29%  Similarity=0.422  Sum_probs=31.6

Q ss_pred             cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHH
Q 013613            5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNA   40 (439)
Q Consensus         5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNA   40 (439)
                      +++.|++.|.. |.+...|++.|...+||++.||+-
T Consensus         2 ~~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~   36 (37)
T PF00627_consen    2 DEEKVQQLMEM-GFSREQAREALRACNGNVERAVDW   36 (37)
T ss_dssp             HHHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHH
T ss_pred             CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHh
Confidence            46889999999 999999999999999999999973

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>smart00804 TAP_C C-terminal domain of vertebrate Tap protein

Probab=95.17  E-value=0.04  Score=44.12  Aligned_cols=39  Identities=23%  Similarity=0.333  Sum_probs=35.9

Q ss_pred             cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613            5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFS   43 (439)
Q Consensus         5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~   43 (439)
                      +++.|.+|...||....=+.+.|+..+||++.|+..|-.
T Consensus        12 q~~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~   50 (63)
T smart00804       12 QQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTE   50 (63)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            456789999999999999999999999999999999944

The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.

>cd00194 UBA Ubiquitin Associated domain

Probab=95.09  E-value=0.058  Score=37.40  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=32.5

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhh
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYF   42 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy   42 (439)
                      ++.|++++++ |.+...|++.|+..+||++.|++-.|
T Consensus         2 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~d~~~A~~~L~   37 (38)
T cd00194           2 EEKLEQLLEM-GFSREEARKALRATNNNVERAVEWLL   37 (38)
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            4678899885 99999999999999999999998775

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=94.80  E-value=0.071  Score=36.85  Aligned_cols=36  Identities=28%  Similarity=0.461  Sum_probs=32.1

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhh
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYF   42 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy   42 (439)
                      .+.|++++++ |.+...|++.|+..+||++.|++-.|
T Consensus         2 ~~~v~~L~~m-Gf~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        2 EEKIDQLLEM-GFSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            4678898887 99999999999999999999998653

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=92.98  E-value=0.18  Score=44.96  Aligned_cols=38  Identities=32%  Similarity=0.413  Sum_probs=34.9

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHH
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNA   40 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNA   40 (439)
                      ..+.+.|+-.|.=||+|...|++.|++++|||-.||-.
T Consensus        74 ~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~  111 (115)
T PRK06369         74 EIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILK  111 (115)
T ss_pred             CCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHH
Confidence            46788999999999999999999999999999999864

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=92.30  E-value=0.23  Score=44.86  Aligned_cols=38  Identities=32%  Similarity=0.476  Sum_probs=34.6

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHH
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNA   40 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNA   40 (439)
                      ..+.+.|.=.|.=||+|...|++.|+++||||-+||-.
T Consensus        82 ~i~eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~  119 (122)
T COG1308          82 DISEEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMK  119 (122)
T ss_pred             CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHH
Confidence            36788899999999999999999999999999999864

>TIGR00264 alpha-NAC-related protein

Probab=92.12  E-value=0.25  Score=44.21  Aligned_cols=36  Identities=31%  Similarity=0.432  Sum_probs=33.5

Q ss_pred             CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHH
Q 013613            4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVN   39 (439)
Q Consensus         4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVN   39 (439)
                      .+.+.|+-.|.=||+|...|++.|++++|||-.||-
T Consensus        77 i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~  112 (116)
T TIGR00264        77 ITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIM  112 (116)
T ss_pred             CCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHH
Confidence            577889999999999999999999999999988885

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=90.80  E-value=0.19  Score=41.70  Aligned_cols=20  Identities=15%  Similarity=0.215  Sum_probs=18.6

Q ss_pred             ceeEEEeeCCCceeeeeeee
Q 013613          413 SFGCLIYSPCSFVLKTTFLC  432 (439)
Q Consensus       413 s~~~~~~~p~~~~~~~~f~~  432 (439)
                      +++|.|++|+|+||.|||..
T Consensus         4 ~~~I~iRlp~G~Rl~rrF~~   23 (85)
T cd01774           4 TVKIVFKLPNGTRVERRFLF   23 (85)
T ss_pred             eEEEEEECCCCCEEEEEeCC
Confidence            68999999999999999984

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00726 UIM Ubiquitin-interacting motif

Probab=89.49  E-value=0.2  Score=34.11  Aligned_cols=19  Identities=42%  Similarity=0.677  Sum_probs=14.7

Q ss_pred             CchHHHHHhhhchhHHHHH
Q 013613          211 EDDEFSRAISLSLKTAEQE  229 (439)
Q Consensus       211 eDdDLakAIsLS~ee~E~e  229 (439)
                      ||++|++||.||+.+.+..
T Consensus         2 EDe~Lq~Ai~lSl~e~e~~   20 (26)
T smart00726        2 EDEDLQLALELSLQEAEES   20 (26)
T ss_pred             hHHHHHHHHHHhHHHhhhc
Confidence            6777888888888877765

Present in proteasome subunit S5a and other ubiquitin-associated proteins.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=89.29  E-value=0.3  Score=40.17  Aligned_cols=20  Identities=20%  Similarity=0.183  Sum_probs=18.2

Q ss_pred             ceeEEEeeCCCceeeeeeee
Q 013613          413 SFGCLIYSPCSFVLKTTFLC  432 (439)
Q Consensus       413 s~~~~~~~p~~~~~~~~f~~  432 (439)
                      .++|.|+||+|.|++|||+.
T Consensus         4 ~~~i~iRlP~G~r~~rrF~~   23 (80)
T cd01771           4 ISKLRVRTPSGDFLERRFLG   23 (80)
T ss_pred             eEEEEEECCCCCEEEEEeCC
Confidence            47899999999999999974

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]

Probab=87.44  E-value=0.58  Score=29.58  Aligned_cols=16  Identities=38%  Similarity=0.410  Sum_probs=9.8

Q ss_pred             hHHHHHHHHHHHhhhh
Q 013613          180 IEEQMIQAAIEASKQE  195 (439)
Q Consensus       180 iEeemiRaAIEASK~e  195 (439)
                      .||+++++||+.|..+
T Consensus         2 ~Ed~~L~~Al~~S~~e   17 (18)
T PF02809_consen    2 DEDEDLQRALEMSLEE   17 (18)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhhhcc
Confidence            4566666666666553

In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=86.44  E-value=0.53  Score=39.54  Aligned_cols=20  Identities=5%  Similarity=-0.159  Sum_probs=17.7

Q ss_pred             eeEEEeeCCCceeeeeeeee
Q 013613          414 FGCLIYSPCSFVLKTTFLCY  433 (439)
Q Consensus       414 ~~~~~~~p~~~~~~~~f~~~  433 (439)
                      -+|.|++|+|+|++|||.+-
T Consensus         6 t~i~vRlP~G~r~~rrF~~~   25 (82)
T cd01773           6 ARLMLRYPDGKREQIALPEQ   25 (82)
T ss_pred             eEEEEECCCCCEEEEEeCCC
Confidence            47999999999999999853

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=86.04  E-value=0.28  Score=51.21  Aligned_cols=41  Identities=22%  Similarity=0.165  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      .+.|.+||.+||.|+..|+.||+..+||++.|...+|....
T Consensus         5 ~~~ls~f~~~t~~se~~~~~~l~s~~~d~~~a~~~~~~~~~   45 (380)
T KOG2086|consen    5 LDSLSEFRAVTGPSESRARFYLESIYWDREAAHRSELEAFA   45 (380)
T ss_pred             hhHHHHHhccCCCCccccccccccCCCchhhhhhhhccccc
Confidence            47899999999999999999999999999999988865543

>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]

Probab=83.94  E-value=0.4  Score=30.28  Aligned_cols=16  Identities=38%  Similarity=0.738  Sum_probs=14.1

Q ss_pred             CCchHHHHHhhhchhH
Q 013613          210 PEDDEFSRAISLSLKT  225 (439)
Q Consensus       210 ~eDdDLakAIsLS~ee  225 (439)
                      .||++|++||.||+++
T Consensus         2 ~Ed~~L~~Al~~S~~e   17 (18)
T PF02809_consen    2 DEDEDLQRALEMSLEE   17 (18)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhhhcc
Confidence            3688999999999986

In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.

>smart00726 UIM Ubiquitin-interacting motif

Probab=83.58  E-value=0.95  Score=30.87  Aligned_cols=21  Identities=38%  Similarity=0.371  Sum_probs=17.9

Q ss_pred             hHHHHHHHHHHHhhhhhhcCC
Q 013613          180 IEEQMIQAAIEASKQEASSGS  200 (439)
Q Consensus       180 iEeemiRaAIEASK~eaee~~  200 (439)
                      .||++|++||+.|..+++...
T Consensus         1 ~EDe~Lq~Ai~lSl~e~e~~~   21 (26)
T smart00726        1 DEDEDLQLALELSLQEAEESX   21 (26)
T ss_pred             ChHHHHHHHHHHhHHHhhhcc
Confidence            378999999999999887653

Present in proteasome subunit S5a and other ubiquitin-associated proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	439
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3bq3_A	270	Defective in cullin neddylation protein 1; ubiquit	9e-06
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 43/342 (12%), Positives = 99/342 (28%), Gaps = 104/342 (30%)

Query: 141 YHSGQMPYDYDGARTSSYHGRDT----RDNLLRDNGSHFYGNDIEEQMIQAAIEASKQEA 196
           +H   M  D++      Y  +D      D  + +    F   D+++ M ++ +  SK+E 
Sbjct: 2   HHHHHM--DFETGEHQ-YQYKDILSVFEDAFVDN----FDCKDVQD-MPKSIL--SKEE- 50

Query: 197 SSGSGVVQRELELPEDDEFSRAISLSLKTAEQEKTIR---GQGVKD-------------R 240
                 +   +   +    +  +  +L + +QE+ ++    + ++              R
Sbjct: 51  ------IDHIIMSKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 241 DRKLEVYDLVKEAEKTNNS---------TRKPGKSSVQEGAENMRSQSPMRYKSEHDVNV 291
              +     +++ ++  N          +R      +++    +R   P +      V +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR---PAKN-----VLI 155

Query: 292 H--TQCSK--------------DAFPAN-EWGGISSKELDEAVMLEAALFGEAATGCSKY 334
                  K                      W  + +    E V+                
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL---------L 206

Query: 335 VQSDLDSNAGPGSSSGSRASSSVMAQQSLREQQDDEYLASL--LAD-------------- 378
            Q D +  +    SS  +     +  +  R  +   Y   L  L +              
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 379 ------REKE-MNALKEAESLQLSRDESQKKILEEEVVKLLS 413
                 R K+  + L  A +  +S D     +  +EV  LL 
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Length = 46

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 1  MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEG 45
          M    Q+ +  F ++TGA +  A   LE  G +L  A+ +++ +G
Sbjct: 1  MAEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	439
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	99.25
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	99.05
2dzl_A	66	Protein FAM100B; UBA-like domain, structural genom	99.04
2dam_A	67	ETEA protein; KIAA0887, UBA-like domain, structura	99.0
3e21_A	45	HFAF1, FAS-associated factor 1; UBA, alternative s	98.76
3bq3_A	270	Defective in cullin neddylation protein 1; ubiquit	98.62
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	97.14
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	97.13
4gew_A	362	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	97.03
1q0v_A	81	Hydrophilic protein; has cysteine rich putative zi	96.37
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	96.22
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	96.08
1oai_A	59	Nuclear RNA export factor; nuclear transport, nucl	95.93
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	95.85
2jp7_A	57	MRNA export factor MEX67; solution MEX67, UBA, tra	95.44
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	95.19
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	95.19
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	95.18
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	95.07
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	94.54
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	94.5
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	94.44
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	94.4
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	94.38
2l2d_A	73	OTU domain-containing protein 7A; UBA fold, struct	94.2
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	94.02
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	93.88
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	93.87
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	93.09
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	93.01
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	92.84
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	92.67
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	92.34
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	92.1
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	90.86
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	90.69
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	90.58
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	90.38
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	90.33
2klz_A	52	Ataxin-3; UIM, ubiquitin-binding, hydrolase, neuro	89.06
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	85.01
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	84.98
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	81.98
2dna_A	67	Unnamed protein product; ubiquitin associated doma	81.54
1q0v_A	81	Hydrophilic protein; has cysteine rich putative zi	80.56

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=99.25  E-value=6.1e-12  Score=90.03  Aligned_cols=45  Identities=27%  Similarity=0.445  Sum_probs=40.9

Q ss_pred             CCCCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            1 MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         1 ma~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      |+. .++.|.+|++|||++..+|++||+.++|||+.||+.||..++
T Consensus         2 M~~-~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~~   46 (46)
T 1v92_A            2 AEE-RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGG   46 (46)
T ss_dssp             TTH-HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTCC
T ss_pred             ccc-HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence            444 677899999999999999999999999999999999998764

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.5e-10  Score=89.23  Aligned_cols=43  Identities=37%  Similarity=0.534  Sum_probs=40.4

Q ss_pred             CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      .+++.|+|||+|||+++.+|++||+.++|||+.||+.||..+.
T Consensus        14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~   56 (62)
T 2dal_A           14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGG   56 (62)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred             cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence            3567899999999999999999999999999999999999886

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1e-10  Score=91.73  Aligned_cols=40  Identities=20%  Similarity=0.324  Sum_probs=38.3

Q ss_pred             HHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            7 ETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         7 eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      +.|.+||+|||+++++|++||+.++|||+.||+.||..+.
T Consensus        19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~   58 (66)
T 2dzl_A           19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETN   58 (66)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence            7899999999999999999999999999999999998765

>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=3.4e-10  Score=88.73  Aligned_cols=42  Identities=26%  Similarity=0.335  Sum_probs=39.5

Q ss_pred             cHHHHHHHHHhhC-CCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            5 TQETVDTFTSITG-ASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         5 ~~eaIqQFMsITG-ASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      .++.|+|||+||| ++..+|++||+.|+|||+.||+.||...+
T Consensus        18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~   60 (67)
T 2dam_A           18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE   60 (67)
T ss_dssp             HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            4677999999999 99999999999999999999999999876

>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}

Probab=98.76  E-value=4.3e-09  Score=77.80  Aligned_cols=39  Identities=23%  Similarity=0.315  Sum_probs=34.8

Q ss_pred             cHHHHHHHHHhhCCCH-HHHHHHHHHhCCChHHHHHHhhh
Q 013613            5 TQETVDTFTSITGASQ-SVALQKLEEYGGNLNEAVNAYFS   43 (439)
Q Consensus         5 ~~eaIqQFMsITGASe-avA~qyLEeh~wdL~~AVNAYy~   43 (439)
                      .++.|.+|.+|||++. ..|+.||+.|+|||+.||+.||-
T Consensus         5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~   44 (45)
T 3e21_A            5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP   44 (45)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence            4677999999999996 99999999999999999999984

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=97.14  E-value=0.00062  Score=46.76  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=33.7

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhh
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYF   42 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy   42 (439)
                      .+.|+++|.+ |.+...|++.|..++||++.|++.+|
T Consensus         5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence            5789999999 99999999999999999999999764

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.13  E-value=0.00058  Score=58.38  Aligned_cols=41  Identities=27%  Similarity=0.473  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      ++.|++.|.+||+|+..|+..|.+++|||+.||+.+|....
T Consensus        40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~   80 (104)
T 1wj7_A           40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP   80 (104)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            56899999999999999999999999999999999997663

>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A

Probab=97.03  E-value=0.00033  Score=67.38  Aligned_cols=39  Identities=18%  Similarity=0.430  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE   44 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~   44 (439)
                      .++..+|-+|||+++++|.-||.+++|+|+.|||.||..
T Consensus        46 ~~~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~~   84 (362)
T 4gew_A           46 EQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYGS   84 (362)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHcCC
Confidence            345889999999999999999999999999999999944

>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A

Probab=96.37  E-value=0.0056  Score=50.45  Aligned_cols=57  Identities=35%  Similarity=0.407  Sum_probs=41.9

Q ss_pred             CChHHHHHHHHHHHhhhhhhcCC---C-Ccc---------cccCCCCchHHHHHhhhchhHHHHHHHhhh
Q 013613          178 NDIEEQMIQAAIEASKQEASSGS---G-VVQ---------RELELPEDDEFSRAISLSLKTAEQEKTIRG  234 (439)
Q Consensus       178 NDiEeemiRaAIEASK~eaee~~---~-~~q---------~~~~~~eDdDLakAIsLS~ee~E~ek~lr~  234 (439)
                      .+.+|+.||.||+.|=++.....   . ..+         .....+||+||..||..|+++.|..|--+.
T Consensus         8 ~~~eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASLrd~E~qK~~~~   77 (81)
T 1q0v_A            8 PEDEEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESLREAEEAKLRSE   77 (81)
T ss_dssp             CSSHHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCchHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999876552   1 111         012357799999999999999998875443

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.22  E-value=0.0066  Score=42.88  Aligned_cols=41  Identities=22%  Similarity=0.350  Sum_probs=37.3

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE   44 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~   44 (439)
                      .|+.++|++.|++ |-++..|++.|..++||++.|+|-.|+.
T Consensus         2 ~p~e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~~   42 (43)
T 2g3q_A            2 TPKSLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             CHHHHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence            5778999999997 9999999999999999999999988753

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.08  E-value=0.01  Score=48.79  Aligned_cols=43  Identities=28%  Similarity=0.481  Sum_probs=40.2

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      .+..+.|++.|.+ |.++..|++.|+..+||++.|++-.|+..+
T Consensus        27 ~~~ee~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~sh~~   69 (83)
T 1veg_A           27 SPSQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHHGG   69 (83)
T ss_dssp             CCCHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            3568999999998 999999999999999999999999999887

>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3

Probab=95.93  E-value=0.011  Score=45.52  Aligned_cols=39  Identities=15%  Similarity=0.285  Sum_probs=36.0

Q ss_pred             cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613            5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFS   43 (439)
Q Consensus         5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~   43 (439)
                      +++.|.+|+..||....=+.+.|+..+||++.|+..|-.
T Consensus         7 q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~   45 (59)
T 1oai_A            7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH   45 (59)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            566799999999999999999999999999999999943

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.85  E-value=0.013  Score=46.84  Aligned_cols=42  Identities=17%  Similarity=0.285  Sum_probs=38.2

Q ss_pred             CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      +.+++|++.|.+ |.++..|++.|+.++||++.||+-.|+..+
T Consensus        28 ~~ee~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~~~~   69 (73)
T 1vg5_A           28 ASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMSQSG   69 (73)
T ss_dssp             CCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred             ccHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            457899999997 899999999999999999999999998655

>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A

Probab=95.44  E-value=0.019  Score=44.09  Aligned_cols=40  Identities=15%  Similarity=0.121  Sum_probs=36.7

Q ss_pred             cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613            5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE   44 (439)
Q Consensus         5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~   44 (439)
                      +++.|.+|+..||....=+.+.|+..+||++.|+-.|-.-
T Consensus         6 q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~   45 (57)
T 2jp7_A            6 QLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQSS   45 (57)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            4677999999999999999999999999999999999553

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.19  E-value=0.034  Score=42.47  Aligned_cols=44  Identities=32%  Similarity=0.432  Sum_probs=39.9

Q ss_pred             CCCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            2 TRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         2 a~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      +.+..+.|++.|.+ |.++..|++.|...+||++.|++-.|+..+
T Consensus         6 ~~~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~~~~   49 (63)
T 2dak_A            6 SGPPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSHID   49 (63)
T ss_dssp             CCCCHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            35778999999997 999999999999999999999999998654

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.19  E-value=0.016  Score=42.46  Aligned_cols=39  Identities=15%  Similarity=0.179  Sum_probs=35.6

Q ss_pred             cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613            5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE   44 (439)
Q Consensus         5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~   44 (439)
                      ..+.|++.|.+ |-++..|++.|+..+||++.|++-.|+.
T Consensus         8 ~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~g   46 (49)
T 1ify_A            8 YETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG   46 (49)
T ss_dssp             HHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred             CHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            46789999998 8999999999999999999999998873

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.18  E-value=0.048  Score=43.21  Aligned_cols=43  Identities=30%  Similarity=0.463  Sum_probs=39.9

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      .+..+.|++.|.+ |-++..|++.|...+||++.||+-.|+.++
T Consensus        27 ~~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~~~~~   69 (73)
T 1wiv_A           27 DIDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFNNSG   69 (73)
T ss_dssp             SSCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence            4678899999998 999999999999999999999999998876

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.07  E-value=0.036  Score=42.88  Aligned_cols=43  Identities=23%  Similarity=0.390  Sum_probs=39.1

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      .+..++|++.|.+ |.+...|++.|..++||++.|++-.|+...
T Consensus         7 ~~~~~~I~~L~~M-GF~~~~a~~AL~~~~~nve~A~e~L~~~~~   49 (63)
T 1wji_A            7 GVDEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTSNK   49 (63)
T ss_dssp             SSCHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            4678899999996 999999999999999999999999998765

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.54  E-value=0.047  Score=44.61  Aligned_cols=42  Identities=19%  Similarity=0.263  Sum_probs=38.2

Q ss_pred             CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      ++.+.|+|+|.+ |.++..|++.|...+|||+.|++-.|+..+
T Consensus        20 ~n~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~   61 (85)
T 2dkl_A           20 IMSRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLEKKV   61 (85)
T ss_dssp             HHHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHTTSC
T ss_pred             cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHCcC
Confidence            357889999997 999999999999999999999999998766

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=94.50  E-value=0.069  Score=39.65  Aligned_cols=38  Identities=24%  Similarity=0.517  Sum_probs=34.4

Q ss_pred             HHHHHHHHHhhCC-CHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613            6 QETVDTFTSITGA-SQSVALQKLEEYGGNLNEAVNAYFSE   44 (439)
Q Consensus         6 ~eaIqQFMsITGA-SeavA~qyLEeh~wdL~~AVNAYy~~   44 (439)
                      .++|++.+.+ |- ++..|++.|...+||++.||+-.|+.
T Consensus        13 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~   51 (52)
T 2jy5_A           13 QQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGS   51 (52)
T ss_dssp             HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            4679999998 77 99999999999999999999998864

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=94.44  E-value=0.017  Score=42.30  Aligned_cols=41  Identities=22%  Similarity=0.316  Sum_probs=37.7

Q ss_pred             cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      .+++|++.+++ |.++..|++.|..++||++.|+|-.|+..+
T Consensus         4 e~eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~   44 (47)
T 1dv0_A            4 EKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQNF   44 (47)
T ss_dssp             CHHHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred             hHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence            46789999998 999999999999999999999999998765

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=94.40  E-value=0.067  Score=39.76  Aligned_cols=38  Identities=24%  Similarity=0.485  Sum_probs=34.0

Q ss_pred             HHHHHHHHhhCC-CHHHHHHHHHHhCCChHHHHHHhhhcC
Q 013613            7 ETVDTFTSITGA-SQSVALQKLEEYGGNLNEAVNAYFSEG   45 (439)
Q Consensus         7 eaIqQFMsITGA-SeavA~qyLEeh~wdL~~AVNAYy~~~   45 (439)
                      ++|++.+.+ |- +...|++.|...+||++.||+-.|+.+
T Consensus        13 ~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~~   51 (53)
T 2knz_A           13 QQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred             HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            459999998 56 999999999999999999999998754

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.38  E-value=0.057  Score=40.64  Aligned_cols=41  Identities=24%  Similarity=0.335  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhhCCCHH-HHHHHHHHhCCChHHHHHHhhhcCCc
Q 013613            6 QETVDTFTSITGASQS-VALQKLEEYGGNLNEAVNAYFSEGHR   47 (439)
Q Consensus         6 ~eaIqQFMsITGASea-vA~qyLEeh~wdL~~AVNAYy~~~~R   47 (439)
                      +++|++.+.+ |.+.. .+++.|+..+||++.||+-.|+.++.
T Consensus        10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~   51 (54)
T 2dah_A           10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSGP   51 (54)
T ss_dssp             HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence            5689999998 88555 56999999999999999999998874

>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}

Probab=94.20  E-value=0.078  Score=42.66  Aligned_cols=43  Identities=28%  Similarity=0.390  Sum_probs=37.5

Q ss_pred             cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCCccC
Q 013613            5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDI   49 (439)
Q Consensus         5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~R~~   49 (439)
                      .+..|..|+.-|||..-.|+..|+-.+|||..|+|.|  ++-|-+
T Consensus        17 mdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~--eqLrqv   59 (73)
T 2l2d_A           17 MDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDY--EQLRQV   59 (73)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH--HHHHHC
T ss_pred             HHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhH--HHHHHH
Confidence            4556889999999999999999999999999999999  555543

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.02  E-value=0.071  Score=41.17  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=38.2

Q ss_pred             CcHHHHHHHHHhhCCCHHHHHHHHHHhCC-ChHHHHHHhhhcCC
Q 013613            4 PTQETVDTFTSITGASQSVALQKLEEYGG-NLNEAVNAYFSEGH   46 (439)
Q Consensus         4 p~~eaIqQFMsITGASeavA~qyLEeh~w-dL~~AVNAYy~~~~   46 (439)
                      |..+.|+|.|.+ |-++..|++.|...+| |++.|+|-.|+..+
T Consensus        18 ~~e~~i~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewL~~~~~   60 (64)
T 2cpw_A           18 KHGSALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFSHSG   60 (64)
T ss_dssp             SCCCHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred             CCHHHHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence            556789999997 9999999999999999 99999999998765

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.88  E-value=0.15  Score=41.45  Aligned_cols=43  Identities=14%  Similarity=0.198  Sum_probs=39.4

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      .++.+.|+|.|.+ |-+...|++.|...+||++.|+|-.|+..+
T Consensus        27 ~~~e~~i~~L~~M-GF~~~~a~~AL~~t~~nve~A~ewL~~~~~   69 (83)
T 2dai_A           27 RVDEAALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIEHAE   69 (83)
T ss_dssp             SCCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            3678899999997 999999999999999999999999998765

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=93.87  E-value=0.08  Score=41.68  Aligned_cols=39  Identities=26%  Similarity=0.249  Sum_probs=35.6

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHh
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAY   41 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAY   41 (439)
                      ..+.+.|...+..||++...+.+.|++.+|||+.||.-.
T Consensus         7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L   45 (64)
T 2cp9_A            7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL   45 (64)
T ss_dssp             CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            356788999999999999999999999999999999755

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=93.09  E-value=0.11  Score=40.10  Aligned_cols=43  Identities=9%  Similarity=0.163  Sum_probs=38.5

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHh-CCChHHHHHHhhhcCC
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEY-GGNLNEAVNAYFSEGH   46 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh-~wdL~~AVNAYy~~~~   46 (439)
                      .++.+.|+|+|.+ |-+...|++.|... +||++.|++-.|+..+
T Consensus         7 ~~~~~~v~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewLl~~~~   50 (64)
T 1whc_A            7 GAELTALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLMEHED   50 (64)
T ss_dssp             CCCCCHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHc-CCCHHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence            4567899999996 99999999999999 6999999999998655

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.01  E-value=0.18  Score=36.23  Aligned_cols=40  Identities=13%  Similarity=0.274  Sum_probs=36.0

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE   44 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~   44 (439)
                      .+..+.|++.|.+ |-+...|++.|...+ |++.|++-.|+.
T Consensus         7 ~~~~~~v~~L~~M-GF~~~~a~~AL~~~~-n~e~A~~~L~~h   46 (47)
T 2ekk_A            7 GVNQQQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLTH   46 (47)
T ss_dssp             SSCHHHHHHHHHH-HCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHc-CCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence            4678899999996 999999999999996 999999988764

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.84  E-value=0.21  Score=39.64  Aligned_cols=43  Identities=12%  Similarity=0.096  Sum_probs=38.9

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCC-ChHHHHHHhhhcCC
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGG-NLNEAVNAYFSEGH   46 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~w-dL~~AVNAYy~~~~   46 (439)
                      .++.+.|+|.|.+ |.++..|++.|...++ |++.|+|-.|+..+
T Consensus         7 ~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~   50 (74)
T 2dag_A            7 GLDESVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMSHMD   50 (74)
T ss_dssp             SSCHHHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence            4688999999997 9999999999999985 89999999998665

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}

Probab=92.67  E-value=0.16  Score=42.82  Aligned_cols=37  Identities=32%  Similarity=0.482  Sum_probs=33.4

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHH
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVN   39 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVN   39 (439)
                      ..+.+.|+-.|+=||+|...|.+.|++++|||=.||-
T Consensus        63 ~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~   99 (102)
T 1tr8_A           63 EIPEDDIELVMNQTGASREDATRALQETGGDLAEAIM   99 (102)
T ss_dssp             CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHH
Confidence            4577889999999999999999999999999987774

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=92.34  E-value=0.23  Score=40.33  Aligned_cols=43  Identities=23%  Similarity=0.210  Sum_probs=38.5

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhC-CChHHHHHHhhhcCC
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYG-GNLNEAVNAYFSEGH   46 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~-wdL~~AVNAYy~~~~   46 (439)
                      .++.+.|++.|++ |.+...|++.|...+ ||++.|+|-.|+..+
T Consensus        27 ~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~   70 (84)
T 1vek_A           27 VANEEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLSHMD   70 (84)
T ss_dssp             CCCHHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHc-CCCHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            4578899999997 999999999999985 899999999998655

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=92.10  E-value=0.27  Score=39.48  Aligned_cols=40  Identities=18%  Similarity=0.403  Sum_probs=35.2

Q ss_pred             HHHHHHHHHhhCC-CHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            6 QETVDTFTSITGA-SQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         6 ~eaIqQFMsITGA-SeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      +++|++.+.+ |. +...+++.|+..+||++.||+-.|+..+
T Consensus        30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~   70 (74)
T 1vej_A           30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASG   70 (74)
T ss_dssp             HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence            4689999998 76 6788899999999999999999998655

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=90.86  E-value=0.43  Score=40.26  Aligned_cols=42  Identities=33%  Similarity=0.468  Sum_probs=38.2

Q ss_pred             CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      +..+.|++.|++ |.+...|++.|...+||++.|++-.|+..+
T Consensus        77 ~~e~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~e~L~~~~~  118 (126)
T 2lbc_A           77 PPEEIVAIITSM-GFQRNQAIQALRATNNNLERALDWIFSHPE  118 (126)
T ss_dssp             CCHHHHHHHHHH-TSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred             cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            677899999996 999999999999999999999999987544

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=90.69  E-value=0.49  Score=34.43  Aligned_cols=37  Identities=14%  Similarity=0.360  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhhCC-CHHHHHHHHHHhCCChHHHHHHhhh
Q 013613            6 QETVDTFTSITGA-SQSVALQKLEEYGGNLNEAVNAYFS   43 (439)
Q Consensus         6 ~eaIqQFMsITGA-SeavA~qyLEeh~wdL~~AVNAYy~   43 (439)
                      +++|++.+++ |. +...+++.|+..+||++.||+-.|+
T Consensus         8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~   45 (46)
T 2bwb_A            8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN   45 (46)
T ss_dssp             HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            4679999998 75 5777899999999999999998875

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=90.58  E-value=0.52  Score=36.04  Aligned_cols=39  Identities=13%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             HHHHHHHHHhhCC-CHHHHHHHHHHhCCChHHHHHHhhhcC
Q 013613            6 QETVDTFTSITGA-SQSVALQKLEEYGGNLNEAVNAYFSEG   45 (439)
Q Consensus         6 ~eaIqQFMsITGA-SeavA~qyLEeh~wdL~~AVNAYy~~~   45 (439)
                      +++|++.+++ |. +...+++.|+..+||++.||+-.|+.+
T Consensus        18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~~   57 (58)
T 1wr1_B           18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNGD   57 (58)
T ss_dssp             HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence            3579999998 75 577889999999999999999998753

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=90.38  E-value=0.49  Score=36.60  Aligned_cols=43  Identities=16%  Similarity=0.241  Sum_probs=38.4

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCC-ChHHHHHHhhhcCC
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGG-NLNEAVNAYFSEGH   46 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~w-dL~~AVNAYy~~~~   46 (439)
                      +++.+.|+|.|.. |-+...|++.|...++ +++.|+|-.|+..+
T Consensus         7 ~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~   50 (64)
T 2crn_A            7 GSSPSLLEPLLAM-GFPVHTALKALAATGRKTAEEALAWLHDHCN   50 (64)
T ss_dssp             CCSCSSHHHHHHT-SCCHHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence            5677889999995 9999999999999876 99999999998765

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=90.33  E-value=0.39  Score=38.08  Aligned_cols=41  Identities=20%  Similarity=0.414  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCCc
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHR   47 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~R   47 (439)
                      .+.|.+.+++ |-+...|.+.|++.++||+.|++=.|+..|-
T Consensus        20 ~e~V~~LvsM-GFs~~qA~kALKat~~NvErAaDWLFSH~D~   60 (63)
T 1wgn_A           20 RQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFAHSGP   60 (63)
T ss_dssp             HHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            3557777654 7999999999999999999999999999883

>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}

Probab=89.06  E-value=0.25  Score=37.77  Aligned_cols=33  Identities=42%  Similarity=0.563  Sum_probs=27.2

Q ss_pred             ChHHHHHHHHHHHhhhhhhcCCCCcccccCCCCch--HHHHHhhhch
Q 013613          179 DIEEQMIQAAIEASKQEASSGSGVVQRELELPEDD--EFSRAISLSL  223 (439)
Q Consensus       179 DiEeemiRaAIEASK~eaee~~~~~q~~~~~~eDd--DLakAIsLS~  223 (439)
                      |++|++++.|+.-|.++-            ..||+  ||.+||.||-
T Consensus         4 dEDEedlqrALalSRQE~------------dmEDeeadLrrAiqLSm   38 (52)
T 2klz_A            4 DEDEEDLQRALALSRQEI------------DMEDEEADLRRAIQLSM   38 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHH------------CCSSSHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHh------------ccchhHHHHHHHHHHHh
Confidence            678889999999998854            34555  9999999985

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=85.01  E-value=1.3  Score=37.79  Aligned_cols=41  Identities=20%  Similarity=0.428  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      +++|++.+.+=-.++..+++.|...+||++.||+-.|+.+.
T Consensus        67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~  107 (108)
T 2cwb_A           67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA  107 (108)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence            56788888876567899999999999999999999998764

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=84.98  E-value=1.4  Score=33.77  Aligned_cols=37  Identities=14%  Similarity=0.089  Sum_probs=32.5

Q ss_pred             CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHh
Q 013613            4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAY   41 (439)
Q Consensus         4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAY   41 (439)
                      +..+.|.+.|++ |.|...|+|.|...+||++.|-|-.
T Consensus        10 ~~~~~Ia~Lm~m-GFsr~~ai~AL~~a~nnve~AaniL   46 (52)
T 2ooa_A           10 NVDAKIAKLMGE-GYAFEEVKRALEIAQNNVEVARSIL   46 (52)
T ss_dssp             -CHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            456899999996 9999999999999999999998753

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=81.98  E-value=2.6  Score=32.40  Aligned_cols=39  Identities=18%  Similarity=0.072  Sum_probs=34.3

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhh
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYF   42 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy   42 (439)
                      .|..+.|.+.|++ |.|...|+|.|...+||++.|.|-..
T Consensus         7 ~~~e~~I~~L~~l-GF~r~~ai~AL~~a~nnve~Aa~iL~   45 (53)
T 2d9s_A            7 GQLSSEIERLMSQ-GYSYQDIQKALVIAHNNIEMAKNILR   45 (53)
T ss_dssp             SCSHHHHHHHHHH-TCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHc-CCCHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3566789999996 99999999999999999999988653

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=81.54  E-value=3  Score=33.00  Aligned_cols=40  Identities=18%  Similarity=0.183  Sum_probs=34.4

Q ss_pred             HHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            7 ETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         7 eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      ++|+|.+++=-.+....++.|+..+||++.||+-.|+..+
T Consensus        21 ~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~   60 (67)
T 2dna_A           21 KEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQG   60 (67)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            3788888875567777799999999999999999999877

>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A

Probab=80.56  E-value=0.55  Score=38.72  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=20.3

Q ss_pred             CChHHHHHHHHHHHhhhhhhcCCC
Q 013613          178 NDIEEQMIQAAIEASKQEASSGSG  201 (439)
Q Consensus       178 NDiEeemiRaAIEASK~eaee~~~  201 (439)
                      .++||++++|||+||=++.|+...
T Consensus        51 ~edeD~DLKAAIaASLrd~E~qK~   74 (81)
T 1q0v_A           51 EEEEDPDLKAAIQESLREAEEAKL   74 (81)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHH
Confidence            467789999999999999987644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	439
d1v92a_	46	a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-	6e-11

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 46

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.0 bits (133), Expect = 6e-11
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 1  MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEG 45
          M    Q+ +  F ++TGA +  A   LE  G +L  A+ +++ +G
Sbjct: 1  MAEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	439
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	99.39
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	96.81
d1oaia_	59	FG-binding, C-terminal domain of TAP {Human (Homo	95.88
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	95.19
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	93.86
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	93.83
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	93.8
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	93.51
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	93.49
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	92.53
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	92.34
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	92.27
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	81.15

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.4e-13  Score=99.79  Aligned_cols=46  Identities=28%  Similarity=0.473  Sum_probs=43.7

Q ss_pred             CCCCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            1 MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         1 ma~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      |+...++.|.|||+|||+|+.+|++||+.++|||+.||+.||.+++
T Consensus         1 ma~~~~~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~yfe~gg   46 (46)
T d1v92a_           1 MAEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGG   46 (46)
T ss_dssp             CTTHHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTCC
T ss_pred             CCccHHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHHhcCC
Confidence            7888899999999999999999999999999999999999998864

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=96.81  E-value=0.00074  Score=48.25  Aligned_cols=40  Identities=23%  Similarity=0.357  Sum_probs=33.9

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFS   43 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~   43 (439)
                      .|...+|+..+.+ |-++..|++.|++|+|||+.|+|....
T Consensus         2 tpk~~ai~eL~~M-GF~e~~A~~AL~k~~wnleaAtN~LLd   41 (43)
T d2g3qa1           2 TPKSLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD   41 (43)
T ss_dssp             CHHHHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             CcHHHHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            4667788888664 889999999999999999999997653

>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: FG-binding, C-terminal domain of TAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0053  Score=45.66  Aligned_cols=38  Identities=16%  Similarity=0.294  Sum_probs=35.6

Q ss_pred             cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhh
Q 013613            5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYF   42 (439)
Q Consensus         5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy   42 (439)
                      +++.|.+|...||....=+.+.|++.+||++.|+..|-
T Consensus         7 Qq~mv~~~s~~T~mn~e~s~~cLe~~~Wd~~~A~~~F~   44 (59)
T d1oaia_           7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT   44 (59)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            46779999999999999999999999999999999993

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.19  E-value=0.015  Score=46.89  Aligned_cols=40  Identities=28%  Similarity=0.493  Sum_probs=36.7

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcC
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEG   45 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~   45 (439)
                      ++.|+|.|.+||.|+..|.=.|-.+++||+.|||..+..+
T Consensus        33 ~~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lLEg~   72 (91)
T d1wj7a1          33 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN   72 (91)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHHHHhcC
Confidence            4578999999999999999999999999999999998654

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.86  E-value=0.054  Score=41.19  Aligned_cols=43  Identities=16%  Similarity=0.274  Sum_probs=38.7

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      .+++++|++.|.+ |.+...|++.|+.++||++.|||-.|+...
T Consensus        27 ~~~ee~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Ll~~~~   69 (73)
T d1vg5a_          27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMSQSG   69 (73)
T ss_dssp             CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred             CcCHHHHHHHHHh-CCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence            3678999999886 899999999999999999999999988765

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.83  E-value=0.052  Score=39.86  Aligned_cols=40  Identities=23%  Similarity=0.255  Sum_probs=36.4

Q ss_pred             CCCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHh
Q 013613            2 TRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAY   41 (439)
Q Consensus         2 a~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAY   41 (439)
                      |..+.+.|.+....||++.-...+.|++++||++.|++-.
T Consensus         1 a~is~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~L   40 (54)
T d1efub3           1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENM   40 (54)
T ss_dssp             CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4567889999999999999999999999999999999743

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.048  Score=40.22  Aligned_cols=43  Identities=23%  Similarity=0.390  Sum_probs=39.8

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      .++.+.|++.|.+ |-++..|++.|..+++|++.|||-.|+..+
T Consensus         7 ~~d~~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~~wL~~~~~   49 (63)
T d1wjia_           7 GVDEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTSNK   49 (63)
T ss_dssp             SSCHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred             ccCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            5678899999997 999999999999999999999999999866

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.028  Score=38.90  Aligned_cols=37  Identities=16%  Similarity=0.185  Sum_probs=32.7

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFS   43 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~   43 (439)
                      +++|++.|+ -|-++..|++.|.+++||++.|+|-.|+
T Consensus         5 e~~i~~L~~-MGF~~~~a~~AL~~~~~N~e~A~~~LlS   41 (41)
T d1oqya1           5 ETMLTEIMS-MGYERERVVAALRASYNNPHRAVEYLLT   41 (41)
T ss_dssp             HHHHHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            467888888 5999999999999999999999997653

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.49  E-value=0.048  Score=40.34  Aligned_cols=38  Identities=26%  Similarity=0.289  Sum_probs=34.4

Q ss_pred             CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHh
Q 013613            4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAY   41 (439)
Q Consensus         4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAY   41 (439)
                      .+.+.|.+....||++.....+.|++++||++.|++-.
T Consensus         3 ~s~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~L   40 (56)
T d1xb2b1           3 SSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWL   40 (56)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            35678999999999999999999999999999999753

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.53  E-value=0.084  Score=38.44  Aligned_cols=36  Identities=25%  Similarity=0.274  Sum_probs=32.9

Q ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHh
Q 013613            6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAY   41 (439)
Q Consensus         6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAY   41 (439)
                      -+.|.+....||++.-...+.|++++||++.|++-.
T Consensus         3 ~elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~L   38 (52)
T d1aipc1           3 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLL   38 (52)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            367999999999999999999999999999999743

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.34  E-value=0.14  Score=38.89  Aligned_cols=43  Identities=30%  Similarity=0.438  Sum_probs=39.1

Q ss_pred             CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      .+..++|++.|+ =|-++..|++.|...++|++.|||-.|+..+
T Consensus        27 ~~d~~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~Av~~Lls~~~   69 (73)
T d1wiva_          27 DIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNNSG   69 (73)
T ss_dssp             SSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence            467888999998 5899999999999999999999999998765

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.071  Score=39.60  Aligned_cols=41  Identities=20%  Similarity=0.421  Sum_probs=36.4

Q ss_pred             cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613            5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH   46 (439)
Q Consensus         5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~   46 (439)
                      .+++|++.|.+ |-++..|++.|..++||++.|||-.|+..+
T Consensus        19 de~~v~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Lls~~~   59 (63)
T d1wgna_          19 ERQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFAHSG   59 (63)
T ss_dssp             HHHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            46779999886 889999999999999999999999998654

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.15  E-value=0.44  Score=36.20  Aligned_cols=20  Identities=20%  Similarity=0.281  Sum_probs=18.6

Q ss_pred             ceeEEEeeCCCceeeeeeee
Q 013613          413 SFGCLIYSPCSFVLKTTFLC  432 (439)
Q Consensus       413 s~~~~~~~p~~~~~~~~f~~  432 (439)
                      .+.|.|++|+|.|+.|||..
T Consensus        16 ~~~i~iRlPdG~r~~r~F~~   35 (96)
T d2cr5a1          16 VVTVALRCPNGRVLRRRFFK   35 (96)
T ss_dssp             EEEEEEECTTSCEEEEEEES
T ss_pred             eEEEEEECCCCCEEEEEECC
Confidence            68999999999999999975