Citrus Sinensis ID: 013627

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MKQHQELSKTNNMSHSTAATTTFRLRANSKTRESPKQEAGINGVSLSPELKARAKSVPADVKTNNISKSRRALILNKPKSAEGAVGSHKDDEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPPARAAATQKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDK
cHHHHHHHHcccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcc
ccccHHccccccccccccccccccEEccccccccccccccccEEEEcccccccccccccccccccccHccEEEEEccccccccccccccHcHEEEEEEEccccEEEEEccccccccccccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccHccccHHHHHHHHHHHcccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcc
mkqhqelsktnnmshstaaTTTFRlransktrespkqeagingvslsPELKAraksvpadvktnnisKSRRALILnkpksaegavgshkddevkvfgrslnrpvveqfarprrqrivdanpgkiedglMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQReavgeyqspkfKDVQKLIANKLEHSIVMTDaisetsintppsepkipirnaagverkpqaypsmpaplpppppprpparaaatqktpSFAQLYHSLTKqvekkdlpspvnqkrpavsiaHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEIssyrddtnvpFGAALKKMASLLDK
mkqhqelsktnnmshstaatttfrlransktrespkqeagingvslspelkaraksvpadvktnnisksrralilnkpksaegavgshkddevkvfgrslnrpvveqfarprrqrivdanpgkiedglmdKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKiaslssreqreavgeyqspkfkdVQKLIANKLEHSIVMTDAIsetsintppsepkipIRNAAGVERKPQAYPSMPAPLPPPPPPRPPARAAATQKTPSFAQLYHSLTKqvekkdlpspvnqkrpaVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAvlkhfkwpekkaDAMREAAVEYRDLKQLENEissyrddtnvpfGAALKKMASLLDK
MKQHQELSKTNNMSHSTAATTTFRLRANSKTRESPKQEAGINGVSLSPELKARAKSVPADVKTNNISKSRRALILNKPKSAEGAVGSHKDDEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDkkkkefeekLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKpqaypsmpaplpppppprpparaaaTQKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDK
************************************************************************************************************************************************NLVKDLQSEVFALKAEFVKA************************************************QKLIANKLEHSIVM******************************************************************************************AHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPE***********************************************
************************************************************************************************************************************************************************************************************************************************************************************************************************************IQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLL**
***************STAATTTFRLR***************NGVSLSPELKARAKSVPADVKTNNISKSRRALILNKP************DEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS***********QSPKFKDVQKLIANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKPQAYPSMPAPLP****************TPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDK
*********************************************************PAD***NNISKSRRALILNKPKSA***VGSHKDDEVKVFGRSLNRPVVEQFAR**********************KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS***********QSPKFKDVQKLIANKL*****************************************MPAPL****************K*PS*********K***********************SIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLD*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKQHQELSKTNNMSHSTAATTTFRLRANSKTRESPKQEAGINGVSLSPELKARAKSVPADVKTNNISKSRRALILNKPKSAEGAVGSHKDDEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKxxxxxxxxxxxxxxxxxxxxxVFAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPPARAAATQKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxTNVPFGAALKKMASLLDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query439 2.2.26 [Sep-21-2011]
Q9LI74 1004 Protein CHUP1, chloroplas no no 0.362 0.158 0.525 5e-42
>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  172 bits (436), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 114/160 (71%), Gaps = 1/160 (0%)

Query: 281 TQKTPSFAQLYHSLTKQVEKKD-LPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADI 339
             + P   + Y SL K+  KK+  PS ++      S A ++++GEI+NRS  LLA+KAD+
Sbjct: 718 VHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKADV 777

Query: 340 ETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMR 399
           ET+G F+ SL  +V A+++T+IEDLL FV WLD+ELS L DERAVLKHF WPE KADA+R
Sbjct: 778 ETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADALR 837

Query: 400 EAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDK 439
           EAA EY+DL +LE +++S+ DD N+    ALKKM  LL+K
Sbjct: 838 EAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEK 877
Required for the positioning and movement of chloroplasts. Interacts with profilin and actin independent of its polymerization status. Regulates chloroplast localization by anchoring chloroplasts to the plasma membrane and forming a bridge to the actin cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
359477354 551 PREDICTED: uncharacterized protein LOC10 0.879 0.700 0.600 1e-111
297736821 572 unnamed protein product [Vitis vinifera] 0.879 0.674 0.600 1e-111
356558493 576 PREDICTED: uncharacterized protein LOC10 0.963 0.734 0.521 6e-98
255556608532 conserved hypothetical protein [Ricinus 0.908 0.75 0.564 2e-95
356532863 562 PREDICTED: uncharacterized protein LOC10 0.970 0.758 0.531 1e-94
356545814 565 PREDICTED: uncharacterized protein LOC10 0.906 0.704 0.531 5e-93
357479207 574 Protein CHUP1 [Medicago truncatula] gi|3 0.947 0.724 0.506 2e-92
356565529 567 PREDICTED: uncharacterized protein LOC10 0.872 0.675 0.483 2e-87
297847080 567 hypothetical protein ARALYDRAFT_473964 [ 0.908 0.703 0.473 1e-86
449459796521 PREDICTED: uncharacterized protein LOC10 0.888 0.748 0.483 8e-84
>gi|359477354|ref|XP_002275219.2| PREDICTED: uncharacterized protein LOC100256278 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/403 (60%), Positives = 292/403 (72%), Gaps = 17/403 (4%)

Query: 41  INGVSL-SPELKARAKSVPADVKTNNISKSRRALILNKPKSAEGAVGSHK---DDEVKVF 96
           +NGVS  SP  + RA+S P  ++ NN  K+RR+L+LNKPKS + A+GS K    +EVKV 
Sbjct: 40  LNGVSSPSPAPRPRARSGP--LEMNNSHKARRSLLLNKPKSGDHALGSQKPRDAEEVKVM 97

Query: 97  GRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFA 156
           GRS NRPVV+Q A PRR       P   E    D K KE +EKL L +NL+ +LQSEV  
Sbjct: 98  GRSRNRPVVDQLA-PRR-------PS--EGPEPDDKTKELQEKLDLRQNLINNLQSEVLG 147

Query: 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLI 216
           LKAE  KAQS N EL+  N KL EDL AA AKI +L+SR+Q E+V EYQSPKFKD+QKLI
Sbjct: 148 LKAELDKAQSFNLELQSLNAKLTEDLAAALAKITALTSRQQEESVTEYQSPKFKDIQKLI 207

Query: 217 ANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPPA 276
           ANKLEH  +  +A +E S    PS   +P R    ++ + +  P    P PP PPP+PPA
Sbjct: 208 ANKLEHPKIKQEASNEASTVQAPSAASVP-RVPRAMDSQRKVPPCPAPPPPPLPPPQPPA 266

Query: 277 RAAATQKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIK 336
           RAAAT+K P+  + YHSLTK V K+D     N  +  VS AHSSIVGEIQNRSAH LAIK
Sbjct: 267 RAAATRKAPTLVEFYHSLTKGVGKRDFAQSGNHNKLVVSSAHSSIVGEIQNRSAHQLAIK 326

Query: 337 ADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKAD 396
           ADIETKG FIN LIQ+VLAA+Y+++ED+++FVDWLD ELS+LADERAVLKHFKWPEKKAD
Sbjct: 327 ADIETKGDFINGLIQRVLAASYSDMEDIVKFVDWLDNELSTLADERAVLKHFKWPEKKAD 386

Query: 397 AMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDK 439
           AMREAA+EYRDLK LE+E+S Y+D+ NVP G ALKKMA LLDK
Sbjct: 387 AMREAAIEYRDLKLLESEVSCYKDNANVPCGVALKKMAGLLDK 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297736821|emb|CBI26022.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356558493|ref|XP_003547541.1| PREDICTED: uncharacterized protein LOC100820086 [Glycine max] Back     alignment and taxonomy information
>gi|255556608|ref|XP_002519338.1| conserved hypothetical protein [Ricinus communis] gi|223541653|gb|EEF43202.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356532863|ref|XP_003534989.1| PREDICTED: uncharacterized protein LOC100809254 [Glycine max] Back     alignment and taxonomy information
>gi|356545814|ref|XP_003541329.1| PREDICTED: uncharacterized protein LOC100798183 [Glycine max] Back     alignment and taxonomy information
>gi|357479207|ref|XP_003609889.1| Protein CHUP1 [Medicago truncatula] gi|355510944|gb|AES92086.1| Protein CHUP1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356565529|ref|XP_003550992.1| PREDICTED: uncharacterized protein LOC100820135 [Glycine max] Back     alignment and taxonomy information
>gi|297847080|ref|XP_002891421.1| hypothetical protein ARALYDRAFT_473964 [Arabidopsis lyrata subsp. lyrata] gi|297337263|gb|EFH67680.1| hypothetical protein ARALYDRAFT_473964 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449459796|ref|XP_004147632.1| PREDICTED: uncharacterized protein LOC101205525 [Cucumis sativus] gi|449498773|ref|XP_004160629.1| PREDICTED: uncharacterized protein LOC101231677 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
TAIR|locus:2007755 558 AT1G48280 "AT1G48280" [Arabido 0.359 0.283 0.664 2.5e-81
TAIR|locus:2102385 1004 CHUP1 "CHLOROPLAST UNUSUAL POS 0.357 0.156 0.531 7.2e-45
TAIR|locus:2831359 642 AT4G18570 [Arabidopsis thalian 0.357 0.244 0.487 1.9e-36
TAIR|locus:2007477 392 AT1G07120 "AT1G07120" [Arabido 0.355 0.397 0.421 6.2e-33
TAIR|locus:2007755 AT1G48280 "AT1G48280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 550 (198.7 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
 Identities = 105/158 (66%), Positives = 131/158 (82%)

Query:   282 QKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIET 341
             QK+P  +QL+  L KQ   ++L   VN  +  V+ AH+SIVGEIQNRSAHL+AIKADIET
Sbjct:   280 QKSPPVSQLFQLLNKQDNSRNLSQSVNGNKSQVNSAHNSIVGEIQNRSAHLIAIKADIET 339

Query:   342 KGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREA 401
             KG FIN LIQKVL   ++++ED+++FVDWLDKEL++LADERAVLKHFKWPEKKAD ++EA
Sbjct:   340 KGEFINDLIQKVLTTCFSDMEDVMKFVDWLDKELATLADERAVLKHFKWPEKKADTLQEA 399

Query:   402 AVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDK 439
             AVEYR+LK+LE E+SSY DD N+ +G ALKKMA+LLDK
Sbjct:   400 AVEYRELKKLEKELSSYSDDPNIHYGVALKKMANLLDK 437
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2102385 CHUP1 "CHLOROPLAST UNUSUAL POSITIONING 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2831359 AT4G18570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007477 AT1G07120 "AT1G07120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 439
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 98.88
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 98.15
PF05308253 Mito_fiss_reg: Mitochondrial fission regulator; In 97.65
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 95.85
KOG1923 830 consensus Rac1 GTPase effector FRL [Signal transdu 95.8
PRK13729 475 conjugal transfer pilus assembly protein TraB; Pro 95.55
COG3883265 Uncharacterized protein conserved in bacteria [Fun 94.74
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 94.41
PRK1542279 septal ring assembly protein ZapB; Provisional 93.62
PRK13169110 DNA replication intiation control protein YabA; Re 93.59
COG4026290 Uncharacterized protein containing TOPRIM domain, 93.44
COG3883265 Uncharacterized protein conserved in bacteria [Fun 92.98
PRK10884206 SH3 domain-containing protein; Provisional 92.14
PRK11637428 AmiB activator; Provisional 92.07
KOG1923 830 consensus Rac1 GTPase effector FRL [Signal transdu 91.97
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 91.81
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 91.69
PF0882661 DMPK_coil: DMPK coiled coil domain like; InterPro: 91.69
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 91.68
KOG4603201 consensus TBP-1 interacting protein [Signal transd 90.92
COG5185622 HEC1 Protein involved in chromosome segregation, i 90.91
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 90.88
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 90.87
PRK13729475 conjugal transfer pilus assembly protein TraB; Pro 90.83
PRK11637428 AmiB activator; Provisional 90.76
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 90.56
PRK10884206 SH3 domain-containing protein; Provisional 90.38
KOG2391365 consensus Vacuolar sorting protein/ubiquitin recep 90.23
PF08172248 CASP_C: CASP C terminal; InterPro: IPR012955 This 90.01
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 89.75
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 89.07
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 88.96
COG307479 Uncharacterized protein conserved in bacteria [Fun 88.89
KOG2675480 consensus Adenylate cyclase-associated protein (CA 88.8
PRK0440675 hypothetical protein; Provisional 88.46
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 87.87
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 87.85
PRK09039343 hypothetical protein; Validated 87.84
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 87.6
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 87.33
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 87.33
COG4026290 Uncharacterized protein containing TOPRIM domain, 87.2
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 86.6
PF09304107 Cortex-I_coil: Cortexillin I, coiled coil; InterPr 86.35
PF1022480 DUF2205: Predicted coiled-coil protein (DUF2205); 86.06
PF0410269 SlyX: SlyX; InterPro: IPR007236 The SlyX protein h 86.01
KOG2264 907 consensus Exostosin EXT1L [Signal transduction mec 85.88
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 85.77
PF13851201 GAS: Growth-arrest specific micro-tubule binding 85.72
smart0033865 BRLZ basic region leucin zipper. 85.22
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 84.92
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 84.67
PF14282106 FlxA: FlxA-like protein 84.6
PF00038312 Filament: Intermediate filament protein; InterPro: 84.48
PRK0211973 hypothetical protein; Provisional 84.06
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 83.4
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 83.34
smart0033865 BRLZ basic region leucin zipper. 83.19
PF15290305 Syntaphilin: Golgi-localised syntaxin-1-binding cl 83.1
PF01213312 CAP_N: Adenylate cyclase associated (CAP) N termin 82.74
PF05308253 Mito_fiss_reg: Mitochondrial fission regulator; In 82.55
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 82.54
PF1154476 Spc42p: Spindle pole body component Spc42p; InterP 82.35
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 82.23
PF0882661 DMPK_coil: DMPK coiled coil domain like; InterPro: 82.03
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 81.99
COG4942 420 Membrane-bound metallopeptidase [Cell division and 81.9
PRK0029568 hypothetical protein; Provisional 81.61
KOG0709472 consensus CREB/ATF family transcription factor [Tr 81.51
PRK00888105 ftsB cell division protein FtsB; Reviewed 81.5
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 81.41
KOG2675480 consensus Adenylate cyclase-associated protein (CA 81.36
PF10805106 DUF2730: Protein of unknown function (DUF2730); In 81.11
COG2433652 Uncharacterized conserved protein [Function unknow 81.04
PRK0432574 hypothetical protein; Provisional 81.01
PF10211189 Ax_dynein_light: Axonemal dynein light chain; Inte 80.98
PF08006181 DUF1700: Protein of unknown function (DUF1700); In 80.82
PRK0279372 phi X174 lysis protein; Provisional 80.68
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 80.63
KOG1962216 consensus B-cell receptor-associated protein and r 80.54
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information 
Probab=98.88  E-value=3.7e-09  Score=115.69  Aligned_cols=31  Identities=29%  Similarity=0.485  Sum_probs=23.3

Q ss_pred             CCCCCCcccccCCCCCchhh-------HHhHHhhhhcc
Q 013627          269 PPPPRPPARAAATQKTPSFA-------QLYHSLTKQVE  299 (439)
Q Consensus       269 PpPp~p~~g~~~~~rsP~vv-------eLY~sLk~K~~  299 (439)
                      ||||||+.|+.|+...|+..       -|+++|++|+.
T Consensus       582 ppPPPpp~g~~Gg~ppPP~~gm~pmaPvlP~gLkpKK~  619 (1102)
T KOG1924|consen  582 PPPPPPPGGFLGGPPPPPPPGMFPMAPVLPFGLKPKKV  619 (1102)
T ss_pred             CCCcCCCCCCCCCCCCCCCCCcccccccCCCCCCcccc
Confidence            45555557787777777665       78999999985

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms] Back     alignment and domain information
>PRK04406 hypothetical protein; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) Back     alignment and domain information
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure Back     alignment and domain information
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function Back     alignment and domain information
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>PF14282 FlxA: FlxA-like protein Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK02119 hypothetical protein; Provisional Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp Back     alignment and domain information
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals Back     alignment and domain information
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK00295 hypothetical protein; Provisional Back     alignment and domain information
>KOG0709 consensus CREB/ATF family transcription factor [Transcription] Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms] Back     alignment and domain information
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK04325 hypothetical protein; Provisional Back     alignment and domain information
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility Back     alignment and domain information
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT) Back     alignment and domain information
>PRK02793 phi X174 lysis protein; Provisional Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.5 bits (130), Expect = 5e-08
 Identities = 51/428 (11%), Positives = 114/428 (26%), Gaps = 135/428 (31%)

Query: 88  HKDDEVKVFGRSLNRPVVEQFARPRRQRIV-DANPGKIEDGLMDK-KKKEFEEKLMLSEN 145
           H D E         + ++  F        V + +   ++D       K+E +  +M  + 
Sbjct: 6   HMDFETGEHQYQ-YKDILSVF----EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 146 ---------LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196
                     +   Q E+     +FV+      E+ + N K +   +  E +  S+    
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQ---KFVE------EVLRINYKFLMSPIKTEQRQPSM---- 107

Query: 197 QREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKP 256
                 E +   + D Q                      N    +P + +R A  +E +P
Sbjct: 108 MTRMYIEQRDRLYNDNQVF-----------------AKYNVSRLQPYLKLRQAL-LELRP 149

Query: 257 QAYPS---MP--------APLPPPPPPRPPARAAATQKTPSFAQLYHSLTKQVEKKDLPS 305
                   +           +           +   Q    F   + +L      + +  
Sbjct: 150 AKNVLIDGVLGSGKTWVALDV---------CLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 306 PVN----------QKRPAVSIAHSSIVGEIQNRSAHLLAIKA---------DIETKG--- 343
            +             R   S      +  IQ     LL  K          +++      
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 344 GF-IN----------SLIQKVLAAAYTNI-----------EDLLE-FVDWLDKELSSLAD 380
            F ++           +   + AA  T+I           +++    + +LD     L  
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 381 ER------------AVLKHFK-----WPEKKADAMREA------AVEYRDLKQLENEISS 417
           E               ++        W     D +          +E  + +++ + +S 
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 418 YRDDTNVP 425
           +    ++P
Sbjct: 381 FPPSAHIP 388
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 95.42
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 94.73
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 94.68
3qh9_A81 Liprin-beta-2; coiled-coil, dimerization, structur 93.02
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 91.07
4emc_A190 Monopolin complex subunit CSM1; RWD domain, kineto 90.0
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 89.42
2q6q_A74 Spindle POLE BODY component SPC42; SPC42P, budding 89.19
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 89.05
3he5_A49 Synzip1; heterodimeric coiled-coil, de novo protei 88.43
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 88.42
3bas_A89 Myosin heavy chain, striated muscle/general contro 88.31
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 88.16
3cve_A72 Homer protein homolog 1; coiled coil, alternative 87.96
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 87.68
2v4h_A110 NF-kappa-B essential modulator; transcription, met 87.28
3cvf_A79 Homer-3, homer protein homolog 3; coiled coil, alt 86.98
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 86.82
1wt6_A81 Myotonin-protein kinase; coiled-coil, kinase activ 86.78
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 86.64
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 86.44
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 86.41
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 86.33
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 85.93
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 85.55
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 85.38
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 85.22
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 84.11
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 83.66
3cvf_A79 Homer-3, homer protein homolog 3; coiled coil, alt 83.64
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 83.41
3trt_A77 Vimentin; cytoskeleton, intermediate filament, alp 82.92
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 82.85
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 82.7
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 82.67
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 82.6
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 82.36
3htk_A60 Structural maintenance of chromosomes protein 5; S 81.94
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 81.72
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 81.59
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 81.26
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 81.2
3cve_A72 Homer protein homolog 1; coiled coil, alternative 81.12
3iv1_A78 Tumor susceptibility gene 101 protein; coiled_COIL 80.86
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 80.74
4gkw_A167 Spindle assembly abnormal protein 6; double helix, 80.25
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 80.21
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 80.01
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
Probab=95.42  E-value=0.13  Score=42.31  Aligned_cols=58  Identities=16%  Similarity=0.109  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627          131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK  188 (439)
Q Consensus       131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ  188 (439)
                      .+-.+|++|++..=..|.-|+.+++.|+.++..+.+.++++......|..+..+++.+
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E   63 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ   63 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4667888898888888888888888888888888888888444333344444444433
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens} Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae} Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens} Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens} Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A* Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Back     alignment and structure
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus} Back     alignment and structure
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 81.11
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.11  E-value=1.2  Score=33.93  Aligned_cols=41  Identities=17%  Similarity=0.099  Sum_probs=29.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627          138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL  178 (439)
Q Consensus       138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkEL  178 (439)
                      +-|..+-+.|+.|+.++..+..+...++.+++.|..++..|
T Consensus        45 ~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L   85 (88)
T d1nkpa_          45 VILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL   85 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45777778888888888888777777776666666655544