Citrus Sinensis ID: 013628
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 439 | ||||||
| 255539180 | 421 | conserved hypothetical protein [Ricinus | 0.952 | 0.992 | 0.727 | 0.0 | |
| 224086014 | 439 | predicted protein [Populus trichocarpa] | 0.972 | 0.972 | 0.703 | 1e-167 | |
| 225459856 | 434 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.983 | 0.646 | 1e-165 | |
| 297842379 | 435 | hypothetical protein ARALYDRAFT_895504 [ | 0.968 | 0.977 | 0.645 | 1e-154 | |
| 356509594 | 426 | PREDICTED: uncharacterized protein LOC10 | 0.956 | 0.985 | 0.622 | 1e-154 | |
| 356517940 | 426 | PREDICTED: uncharacterized protein LOC10 | 0.956 | 0.985 | 0.615 | 1e-152 | |
| 6573719 | 482 | T23E18.18 [Arabidopsis thaliana] | 0.970 | 0.883 | 0.643 | 1e-152 | |
| 15222990 | 434 | uncharacterized protein [Arabidopsis tha | 0.965 | 0.976 | 0.645 | 1e-151 | |
| 449455716 | 430 | PREDICTED: uncharacterized protein LOC10 | 0.945 | 0.965 | 0.612 | 1e-146 | |
| 125537836 | 445 | hypothetical protein OsI_05613 [Oryza sa | 0.767 | 0.757 | 0.55 | 1e-105 |
| >gi|255539180|ref|XP_002510655.1| conserved hypothetical protein [Ricinus communis] gi|223551356|gb|EEF52842.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/429 (72%), Positives = 358/429 (83%), Gaps = 11/429 (2%)
Query: 10 MQITRWVIDLDWRLLLLIIPPLSILVFLSLSSIPINPFSTFTPIKSFISNRTLTPTTTTS 69
M ITRW DLDWR LLLI PPLS L+F+S+SS PI+PFS+F P+ SF NRT T +
Sbjct: 1 MFITRWFSDLDWRFLLLIAPPLSFLIFISVSSTPISPFSSFPPLASFFFNRT-TAASLPL 59
Query: 70 TNSADFVISSPNGANPAAAQWKDELLRSRIAVCLVGGARRFELTGPSIIENILEVYPNAD 129
+ I S WKDEL RSRIAVCLVGGARRFELTGPSI++NIL VYPN+D
Sbjct: 60 NRTELLPIRS----------WKDELDRSRIAVCLVGGARRFELTGPSIVDNILNVYPNSD 109
Query: 130 LFLHSPLDKNAYKFSLLKLAPRLASVRIFEPKPLNETESQVRVLTAAHSPNGIQGLLQYF 189
LFLHSPLD+N++KFSLLK+A RLASVRIF+PKP+ ETESQVRVLTAA+SPNGIQGLLQYF
Sbjct: 110 LFLHSPLDQNSFKFSLLKIASRLASVRIFQPKPMPETESQVRVLTAANSPNGIQGLLQYF 169
Query: 190 NLVEGCLNMIEAYQKGNNFTYKWIVRTRVDGYWNLPLDPDNFIPDQYLVPPGSSFGGLND 249
NLVEGCL MIE YQ NNFTY WIVRTRVDGYWN PLDPDNFIP QYLVPPGS++GGLND
Sbjct: 170 NLVEGCLTMIEEYQTQNNFTYDWIVRTRVDGYWNAPLDPDNFIPGQYLVPPGSTYGGLND 229
Query: 250 RLGIGDLNTSIVALSRLSLIPQLDLAGFRQLNSETAFKAQLTTHHVPRLTKRLPFCIVTD 309
RLGIGD N SI+ALSRLS+IP+LD AGFR LNSET+FKAQLTTH VP +TKRLPFCIV+D
Sbjct: 230 RLGIGDFNVSIIALSRLSVIPKLDSAGFRMLNSETSFKAQLTTHGVPFVTKRLPFCIVSD 289
Query: 310 RKYGFPPSRFGVPVAAMSSKGPLSGAKCRPCTAVCRGSCVNDVMLSLYKGWSWTNWENGT 369
RKYGFPP+RFGVPVAA++S GPLSGAKCRPCT VC+GSCV +M L KGWSWTNWENGT
Sbjct: 290 RKYGFPPNRFGVPVAALASPGPLSGAKCRPCTPVCKGSCVGVIMQWLDKGWSWTNWENGT 349
Query: 370 LELCDARGGWESDWEEIFDRVAGKKLASARKKVRSLGVRRCVDDFNKMKRRAFSWEAPPP 429
L+LCDA WE+ WE +FD+VAGK+ A+ARK+V L +++CVDDF+ MKRRA W++PP
Sbjct: 350 LQLCDAHEDWENGWEILFDKVAGKQRAAARKRVWGLKLKQCVDDFSDMKRRAGKWDSPPV 409
Query: 430 EDICRLGLG 438
ED+CRLG+G
Sbjct: 410 EDMCRLGVG 418
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086014|ref|XP_002307778.1| predicted protein [Populus trichocarpa] gi|222857227|gb|EEE94774.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225459856|ref|XP_002285930.1| PREDICTED: uncharacterized protein LOC100262535 [Vitis vinifera] gi|302141669|emb|CBI18872.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297842379|ref|XP_002889071.1| hypothetical protein ARALYDRAFT_895504 [Arabidopsis lyrata subsp. lyrata] gi|297334912|gb|EFH65330.1| hypothetical protein ARALYDRAFT_895504 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356509594|ref|XP_003523532.1| PREDICTED: uncharacterized protein LOC100814333 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356517940|ref|XP_003527643.1| PREDICTED: uncharacterized protein LOC100786713 [Glycine max] | Back alignment and taxonomy information |
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| >gi|6573719|gb|AAF17639.1|AC009978_15 T23E18.18 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|15222990|ref|NP_177752.1| uncharacterized protein [Arabidopsis thaliana] gi|26451994|dbj|BAC43087.1| unknown protein [Arabidopsis thaliana] gi|28951023|gb|AAO63435.1| At1g76250 [Arabidopsis thaliana] gi|332197694|gb|AEE35815.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449455716|ref|XP_004145597.1| PREDICTED: uncharacterized protein LOC101216898 [Cucumis sativus] gi|449485275|ref|XP_004157120.1| PREDICTED: uncharacterized protein LOC101225904 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|125537836|gb|EAY84231.1| hypothetical protein OsI_05613 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 439 | ||||||
| TAIR|locus:2199782 | 434 | AT1G76250 [Arabidopsis thalian | 0.972 | 0.983 | 0.613 | 3.5e-139 |
| TAIR|locus:2199782 AT1G76250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
Identities = 265/432 (61%), Positives = 310/432 (71%)
Query: 10 MQITRWVIDLDWRXXXXXXX-XXXXXXXXXXXXXXXNPFSTFTPIKSFISNRXXXXXXXX 68
M ++R + D+D R +PF T P+++ I
Sbjct: 1 MYVSRRISDVDRRLLLLLIIPSLTLLVLISFSSLSLDPFPTLAPLRNLIYTHTLTVTDFT 60
Query: 69 ---XXNSADFVISSPNGANPAAAQWKDELLRSRIAVCLVGGARRFELTGPSIIENILEVY 125
++ + VI + N + ++EL++S+IAVCLVGGARRFELTGPSI+E IL VY
Sbjct: 61 VELSDSNPNDVIQAEEMENRRRRK-REELVKSKIAVCLVGGARRFELTGPSIMEKILRVY 119
Query: 126 PNADLFLHSPLDKNAYKFSLLKLAPRLASVRIFEPKPLNETESQVRVLTAAHSPNGIQGL 185
PNADLFL+SPLDKN++K LLK APRLA VRIFEPKP+NETE VRVLT +SPNGI+GL
Sbjct: 120 PNADLFLNSPLDKNSFKLRLLKDAPRLAWVRIFEPKPINETEPMVRVLTPMNSPNGIKGL 179
Query: 186 LQYFNLVEGCLNMIEAYQKGNNFTYKWIVRTRVDGYWNLPLDPDNFIPDQYLVPPGSSFG 245
LQYFNLVEGC+ MI+AYQ NNFTY WIVRTRVDGYW PLDP+ FIP QYLVPPGSS+G
Sbjct: 180 LQYFNLVEGCITMIKAYQNENNFTYDWIVRTRVDGYWADPLDPEYFIPGQYLVPPGSSYG 239
Query: 246 GLNDRLGIGDLNTSIVALSRLSLIPQLDLAGFRQLNSETAFKAQLTTHHVPRLTKRLPFC 305
GLNDR G+GDLNTS VALSRLSLIP LD AG LNSE+AFKAQLTT VP +TK LPFC
Sbjct: 240 GLNDRFGVGDLNTSTVALSRLSLIPDLDSAGLTHLNSESAFKAQLTTQRVPYVTKPLPFC 299
Query: 306 IVTDRKYGFPPSRFGVPVAAMSSKGPLSGAKCRPCTAVCRGSCVNDVMLSLYKGWSWTNW 365
I+TDR Y FPP R+GVPVAA+SS+GPL+GAKCRPCT C GSCV +VM L K WSWT W
Sbjct: 300 IMTDRTYDFPPYRYGVPVAALSSRGPLNGAKCRPCTVACNGSCVAEVMGKLNKEWSWTEW 359
Query: 366 ENGTLELCDARGGWESDWEEIFDRVAGKKLASARKKVRSLGVRRCVDDFNKMKRRAFSWE 425
EN T+ELCDA G WE WE+IFD AG+KLA ARK+V L RRCV++F M+ A WE
Sbjct: 360 ENETVELCDAHGEWEKGWEKIFDETAGEKLALARKRVGGLDSRRCVEEFENMRGMAVKWE 419
Query: 426 APPPEDICRLGL 437
AP E IC LGL
Sbjct: 420 APASEQICTLGL 431
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.436 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 439 407 0.00078 118 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 626 (67 KB)
Total size of DFA: 291 KB (2149 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.41u 0.10s 30.51t Elapsed: 00:00:01
Total cpu time: 30.41u 0.10s 30.51t Elapsed: 00:00:01
Start: Sat May 11 08:47:52 2013 End: Sat May 11 08:47:53 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 439 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 49.1 bits (116), Expect = 3e-06
Identities = 58/397 (14%), Positives = 117/397 (29%), Gaps = 115/397 (28%)
Query: 8 GTMQITRWVIDLDWRLLLLIIPPLSILVFLSLSSIPINPFSTFTPIKSFISN-------- 59
V+++ +LL I P + S S+I + S ++ + +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 60 ------------------RTLTPTTTTSTNSADFVISS----PNGANPAAAQWKDELLRS 97
+ L TT DF+ ++ + + + DE+ S
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-S 305
Query: 98 RIAVCLVGGARRFEL------TGP---SIIENILEVYPN-ADLFLHSPLDK--NAYKFSL 145
+ L R +L T P SII + D + H DK + SL
Sbjct: 306 LLLKYL--DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 146 LKLAP--------RLASVRIFE-----PKPL------NETESQVRV---------LTAAH 177
L P RL+ +F P L + +S V V L
Sbjct: 364 NVLEPAEYRKMFDRLS---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 178 SPNGIQGLLQ-YFNLVEGCLN-------MIEAYQKGNNFTYKWIVRTRVDGYW------- 222
+ Y L N +++ Y F ++ +D Y+
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 223 ---NLPLDPDNFIPDQYLVPPGSSFGGLNDRLGIGDLNTSIVALSRLSLIPQL-DLAGFR 278
+ +L F L ++ + S + S++ L L ++
Sbjct: 481 LKNIEHPERMTLFRMVFL-----DFRFLEQKI----RHDSTAWNASGSILNTLQQLKFYK 531
Query: 279 Q--LNSETAFKAQLTT--HHVPRLTKRL---PF-CIV 307
+++ ++ + +P++ + L + ++
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00