Citrus Sinensis ID: 013640

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQAAR
ccccccHHHHccccHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHEEcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEccccEEEEccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcc
cccccHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHccccccEEcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHcccccEEEccccEEEEccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccc
matydltqriapnldrhlVFPLLEFLqerqmypdeQILKSKIELLNKTNMVDYAMDIHKslyhtedvpqDMVERRVEVVARLKALEERAAPivsflqnpnsfqdlrandqhynLQMLHDRYQIGPDQIEALYQYAKFQFecgnysgaADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLkekvddpksftsplnQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEqnsykdpiTEFLACVYVNYDFDGAQKKMKECEEVilndpflgkrvedsnfatvplrDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNskldakidaksgtvimepthpnVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQAAR
matydltqriapnldrhLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQeqnsykdpiTEFLACVYVNYDFDGAQKKMKECEEVILndpflgkrvedsnfatvplrdEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEhaqtqaar
MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQAAR
******TQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQL****************MQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLL*********
*ATYDLTQRIAPNLDRHLVFPLLEFLQERQM**DEQILKSKIELLNKTNMVDYAMDIHK****************************RAAPIVSFLQN****************QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYK***************
MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQAAR
**TYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQ*****
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MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAxxxxxxxxxxxxxxxxxxxxxVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQAAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query439 2.2.26 [Sep-21-2011]
A7RWP6448 Eukaryotic translation in N/A no 0.949 0.930 0.560 1e-137
Q3T102445 Eukaryotic translation in yes no 0.968 0.955 0.532 1e-131
Q641X8445 Eukaryotic translation in yes no 0.968 0.955 0.532 1e-130
Q5R8K9445 Eukaryotic translation in yes no 0.968 0.955 0.532 1e-130
P60229445 Eukaryotic translation in yes no 0.968 0.955 0.532 1e-130
Q4R6G8445 Eukaryotic translation in N/A no 0.968 0.955 0.532 1e-130
P60228445 Eukaryotic translation in yes no 0.968 0.955 0.532 1e-130
Q6P7L9446 Eukaryotic translation in yes no 0.970 0.955 0.519 1e-130
Q05AY2446 Eukaryotic translation in N/A no 0.940 0.926 0.533 1e-130
Q1LUA8446 Eukaryotic translation in yes no 0.940 0.926 0.526 1e-129
>sp|A7RWP6|EIF3E_NEMVE Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis GN=v1g163572 PE=3 SV=1 Back     alignment and function desciption
 Score =  488 bits (1255), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/432 (56%), Positives = 314/432 (72%), Gaps = 15/432 (3%)

Query: 1   MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKS 60
           MA +DLT ++   LDRHLVFPLLEFL  +++Y + ++LK K++LL+ TNMVD+AMD++K 
Sbjct: 1   MAEHDLTSKMGCFLDRHLVFPLLEFLSVKEIYDEHELLKGKLDLLSNTNMVDFAMDVYKG 60

Query: 61  LYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPN-SFQDLRANDQHYNLQMLHD 119
           LY  E+VP  +VE+RVEVV  LK L+ +  PI++   +P  + Q     D     + L  
Sbjct: 61  LYPDEEVPTSLVEKRVEVVKELKDLQAQTEPIINCFSDPEFTAQVQSTRDGRQLFEYLER 120

Query: 120 RYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE-RRLSALWGKMAAEILM 178
            + I P+ ++ LY++AKFQ+ECGNYSGAA+YLY YRAL    +   L+ALWGK+A+EILM
Sbjct: 121 NHDIKPEMLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEILM 180

Query: 179 QNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDL-FN 237
           QNWD ALE+LN+LK+ ++   S    L  +Q R WL+HWSLF+FFNH  GR LIIDL   
Sbjct: 181 QNWDTALEDLNRLKDVIESNTS-AGTLQLLQERTWLIHWSLFVFFNHPKGRDLIIDLILY 239

Query: 238 QDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYV 297
           Q +YLNAIQT  PH+LRYL TA I NKRRRP  KD +KVIQQE  +Y+DPITEFL C+YV
Sbjct: 240 QPQYLNAIQTMCPHILRYLTTAVITNKRRRPVLKDLVKVIQQESYTYRDPITEFLECLYV 299

Query: 298 NYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQR 357
           N+DFDGAQKK++ECE V+LND FL           V  RD+F+ENARLFIFET+CRIHQ 
Sbjct: 300 NFDFDGAQKKLRECETVLLNDFFL-----------VACRDDFIENARLFIFETFCRIHQC 348

Query: 358 IDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKG 417
           I +++LAEKLN+  EEA+RWIVNLIRN+KLDAKID+K G V+M    P+VY+Q+I+ TK 
Sbjct: 349 ISISMLAEKLNMTPEEAERWIVNLIRNAKLDAKIDSKLGHVVMGVQAPSVYQQVIEKTKN 408

Query: 418 LSGRTYKLVGQL 429
           L  +T  L G +
Sbjct: 409 LQYKTQVLAGNI 420
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Nematostella vectensis (taxid: 45351)
>sp|Q3T102|EIF3E_BOVIN Eukaryotic translation initiation factor 3 subunit E OS=Bos taurus GN=EIF3E PE=2 SV=1 Back     alignment and function description
>sp|Q641X8|EIF3E_RAT Eukaryotic translation initiation factor 3 subunit E OS=Rattus norvegicus GN=Eif3e PE=2 SV=1 Back     alignment and function description
>sp|Q5R8K9|EIF3E_PONAB Eukaryotic translation initiation factor 3 subunit E OS=Pongo abelii GN=EIF3E PE=2 SV=2 Back     alignment and function description
>sp|P60229|EIF3E_MOUSE Eukaryotic translation initiation factor 3 subunit E OS=Mus musculus GN=Eif3e PE=1 SV=1 Back     alignment and function description
>sp|Q4R6G8|EIF3E_MACFA Eukaryotic translation initiation factor 3 subunit E OS=Macaca fascicularis GN=EIF3E PE=2 SV=1 Back     alignment and function description
>sp|P60228|EIF3E_HUMAN Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1 Back     alignment and function description
>sp|Q6P7L9|EIF3E_XENTR Eukaryotic translation initiation factor 3 subunit E OS=Xenopus tropicalis GN=eif3e PE=2 SV=1 Back     alignment and function description
>sp|Q05AY2|EI3EA_XENLA Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus laevis GN=eif3e-a PE=2 SV=1 Back     alignment and function description
>sp|Q1LUA8|EI3EB_DANRE Eukaryotic translation initiation factor 3 subunit E-B OS=Danio rerio GN=eif3eb PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
337733642439 eukaryotic translation initiation factor 1.0 1.0 0.995 0.0
224086948437 predicted protein [Populus trichocarpa] 0.995 1.0 0.895 0.0
449449799437 PREDICTED: eukaryotic translation initia 0.995 1.0 0.881 0.0
225441924437 PREDICTED: eukaryotic translation initia 0.995 1.0 0.876 0.0
356500541437 PREDICTED: eukaryotic translation initia 0.995 1.0 0.867 0.0
224137814437 predicted protein [Populus trichocarpa] 0.995 1.0 0.872 0.0
356534704437 PREDICTED: eukaryotic translation initia 0.995 1.0 0.867 0.0
297820522441 hypothetical protein ARALYDRAFT_486171 [ 0.988 0.984 0.860 0.0
18410687441 translation initiation factor eIF-3 subu 0.988 0.984 0.855 0.0
7689381441 eIF3e [Arabidopsis thaliana] 0.988 0.984 0.848 0.0
>gi|337733642|gb|AEI72270.1| eukaryotic translation initiation factor protein [Citrus trifoliata] Back     alignment and taxonomy information
 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/439 (99%), Positives = 438/439 (99%)

Query: 1   MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKS 60
           MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKS
Sbjct: 1   MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKS 60

Query: 61  LYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDR 120
           LYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQML+DR
Sbjct: 61  LYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDR 120

Query: 121 YQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQN 180
           YQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQN
Sbjct: 121 YQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQN 180

Query: 181 WDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDK 240
           WDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDK
Sbjct: 181 WDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDK 240

Query: 241 YLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYD 300
           YLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYD
Sbjct: 241 YLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYD 300

Query: 301 FDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDM 360
           FDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDM
Sbjct: 301 FDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDM 360

Query: 361 AVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSG 420
           AVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPT PNVYEQLIDHTKGLSG
Sbjct: 361 AVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTQPNVYEQLIDHTKGLSG 420

Query: 421 RTYKLVGQLLEHAQTQAAR 439
           RTYKLVGQLLEHAQTQAAR
Sbjct: 421 RTYKLVGQLLEHAQTQAAR 439

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224086948|ref|XP_002308015.1| predicted protein [Populus trichocarpa] gi|118488342|gb|ABK95989.1| unknown [Populus trichocarpa] gi|222853991|gb|EEE91538.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449449799|ref|XP_004142652.1| PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225441924|ref|XP_002284533.1| PREDICTED: eukaryotic translation initiation factor 3 subunit E [Vitis vinifera] Back     alignment and taxonomy information
>gi|356500541|ref|XP_003519090.1| PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Glycine max] Back     alignment and taxonomy information
>gi|224137814|ref|XP_002322658.1| predicted protein [Populus trichocarpa] gi|222867288|gb|EEF04419.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356534704|ref|XP_003535892.1| PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Glycine max] Back     alignment and taxonomy information
>gi|297820522|ref|XP_002878144.1| hypothetical protein ARALYDRAFT_486171 [Arabidopsis lyrata subsp. lyrata] gi|297323982|gb|EFH54403.1| hypothetical protein ARALYDRAFT_486171 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18410687|ref|NP_567047.1| translation initiation factor eIF-3 subunit 6 [Arabidopsis thaliana] gi|12407658|gb|AAG53613.1|AF285832_1 eukaryotic initiation factor 3E subunit [Arabidopsis thaliana] gi|14532578|gb|AAK64017.1| putative translation initiation factor 3 [Arabidopsis thaliana] gi|19310715|gb|AAL85088.1| putative translation initiation factor 3 [Arabidopsis thaliana] gi|332646115|gb|AEE79636.1| translation initiation factor eIF-3 subunit 6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7689381|gb|AAF67757.1|AF255679_1 eIF3e [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
TAIR|locus:2082593441 EIF3E "AT3G57290" [Arabidopsis 0.988 0.984 0.855 3e-204
UNIPROTKB|Q3T102445 EIF3E "Eukaryotic translation 0.968 0.955 0.532 4.6e-121
UNIPROTKB|E2R1J6445 EIF3E "Eukaryotic translation 0.968 0.955 0.532 4.6e-121
UNIPROTKB|P60228445 EIF3E "Eukaryotic translation 0.968 0.955 0.532 4.6e-121
UNIPROTKB|Q4R6G8445 EIF3E "Eukaryotic translation 0.968 0.955 0.532 4.6e-121
UNIPROTKB|Q5R8K9445 EIF3E "Eukaryotic translation 0.968 0.955 0.532 4.6e-121
MGI|MGI:99257445 Eif3e "eukaryotic translation 0.968 0.955 0.532 4.6e-121
RGD|1311521445 Eif3e "eukaryotic translation 0.968 0.955 0.532 4.6e-121
UNIPROTKB|F1S1G0446 EIF3E "Eukaryotic translation 0.968 0.952 0.526 8.5e-120
UNIPROTKB|Q6P7L9446 eif3e "Eukaryotic translation 0.970 0.955 0.519 8.5e-120
TAIR|locus:2082593 EIF3E "AT3G57290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1976 (700.6 bits), Expect = 3.0e-204, P = 3.0e-204
 Identities = 373/436 (85%), Positives = 405/436 (92%)

Query:     4 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYH 63
             YDLT  IAPNLDRHLVFP+ EFLQERQ+YPDEQILKSKI+LLN+TNMVDYAMDIHKSLYH
Sbjct:     8 YDLTPLIAPNLDRHLVFPIFEFLQERQLYPDEQILKSKIQLLNQTNMVDYAMDIHKSLYH 67

Query:    64 TEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQI 123
             TED PQ+MVERR EVVARLK+LEE AAP+VSFL NPN+ Q+LRA D+ YNLQML +RYQI
Sbjct:    68 TEDAPQEMVERRTEVVARLKSLEEAAAPLVSFLLNPNAVQELRA-DKQYNLQMLKERYQI 126

Query:   124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDI 183
             GPDQIEALYQYAKFQFECGNYSGAADYLYQYR LC+N ER LSALWGK+A+EILMQNWDI
Sbjct:   127 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRTLCSNLERSLSALWGKLASEILMQNWDI 186

Query:   184 ALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLN 243
             ALEELN+LKE +D  KSF+SPLNQ+Q+RIWLMHW L+IFFNHDNGRT IIDLFNQDKYLN
Sbjct:   187 ALEELNRLKEIIDS-KSFSSPLNQVQNRIWLMHWGLYIFFNHDNGRTQIIDLFNQDKYLN 245

Query:   244 AIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDG 303
             AIQT+APHLLRYLATAFIVNKRRRPQ K+FIKVIQQE  SYKDPI EFLACV+VNYDFDG
Sbjct:   246 AIQTSAPHLLRYLATAFIVNKRRRPQLKEFIKVIQQEHYSYKDPIIEFLACVFVNYDFDG 305

Query:   304 AQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVL 363
             AQKKMKECEEVI+NDPFLGKRVED NF+TVPLRDEFLENARLF+FETYC+IHQRIDM VL
Sbjct:   306 AQKKMKECEEVIVNDPFLGKRVEDGNFSTVPLRDEFLENARLFVFETYCKIHQRIDMGVL 365

Query:   364 AEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTY 423
             AEKLNLNYEEA+RWIVNLIR SKLDAKID++SGTVIMEPT PNV+EQLI+HTKGLSGRTY
Sbjct:   366 AEKLNLNYEEAERWIVNLIRTSKLDAKIDSESGTVIMEPTQPNVHEQLINHTKGLSGRTY 425

Query:   424 KLVGQLLEHAQTQAAR 439
             KLV QLLEH Q QA R
Sbjct:   426 KLVNQLLEHTQAQATR 441
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IPI
GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS
GO:0008180 "signalosome" evidence=IPI
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0006412 "translation" evidence=IMP
GO:0009640 "photomorphogenesis" evidence=RCA;IMP
GO:0009908 "flower development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006606 "protein import into nucleus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
UNIPROTKB|Q3T102 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1J6 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P60228 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R6G8 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R8K9 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
MGI|MGI:99257 Eif3e "eukaryotic translation initiation factor 3, subunit E" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311521 Eif3e "eukaryotic translation initiation factor 3, subunit E" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1G0 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P7L9 eif3e "Eukaryotic translation initiation factor 3 subunit E" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5ZLA5EIF3E_CHICKNo assigned EC number0.51680.96810.9550yesno
A7RWP6EIF3E_NEMVENo assigned EC number0.56010.94980.9308N/Ano
Q6DRI1EI3EA_DANRENo assigned EC number0.51230.97030.9551yesno
P60228EIF3E_HUMANNo assigned EC number0.53250.96810.9550yesno
P60229EIF3E_MOUSENo assigned EC number0.53250.96810.9550yesno
Q5R8K9EIF3E_PONABNo assigned EC number0.53250.96810.9550yesno
O61820EIF3E_CAEELNo assigned EC number0.40410.93840.9537yesno
Q05AY2EI3EA_XENLANo assigned EC number0.53360.94070.9260N/Ano
Q2UKS9EIF3E_ASPORNo assigned EC number0.43550.92020.8957yesno
Q6P7L9EIF3E_XENTRNo assigned EC number0.51910.97030.9551yesno
Q3T102EIF3E_BOVINNo assigned EC number0.53250.96810.9550yesno
O77410EIF3E_DROMENo assigned EC number0.46040.94530.9540yesno
Q6C0Q2EIF3E_YARLINo assigned EC number0.39120.92930.9691yesno
Q4R6G8EIF3E_MACFANo assigned EC number0.53250.96810.9550N/Ano
Q641X8EIF3E_RATNo assigned EC number0.53250.96810.9550yesno
P0CN50EIF3E_CRYNJNo assigned EC number0.40500.93160.8833yesno
Q29EX2EIF3E_DROPSNo assigned EC number0.46040.94530.9562yesno
Q3B8M3EI3EB_XENLANo assigned EC number0.51910.97030.9551N/Ano
B5DGH9EIF3E_SALSANo assigned EC number0.51230.97030.9573N/Ano
A5AAA4EIF3E_ASPNCNo assigned EC number0.44020.92250.8960yesno
Q5B973EIF3E_EMENINo assigned EC number0.43320.92020.9017yesno
Q1LUA8EI3EB_DANRENo assigned EC number0.52660.94070.9260yesno
Q4WY08EIF3E_ASPFUNo assigned EC number0.44490.92020.8957yesno
Q7QIL8EIF3E_ANOGANo assigned EC number0.45060.94980.9630yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
pfam09440133 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domai 2e-42
pfam01399100 pfam01399, PCI, PCI domain 9e-14
smart0075388 smart00753, PAM, PCI/PINT associated module 7e-11
smart0008888 smart00088, PINT, motif in proteasome subunits, In 7e-11
>gnl|CDD|220243 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain Back     alignment and domain information 
 Score =  145 bits (368), Expect = 2e-42
 Identities = 62/134 (46%), Positives = 95/134 (70%), Gaps = 1/134 (0%)

Query: 5   DLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHT 64
           DLTQ++AP LDRHL+FPLLEFL  + +Y ++++LK+K+ELL KTNM DY  D+ K LY  
Sbjct: 1   DLTQKLAPYLDRHLIFPLLEFLAGKGIYDEKELLKAKLELLKKTNMTDYVADLRKELYPD 60

Query: 65  EDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIG 124
           E++P ++  +R EV+  L+ L+E  API   L++P   ++LR +D+  NL+ L + + I 
Sbjct: 61  EEMPAELAAKRQEVLKELQELQEEVAPITKLLEDPEVIKNLR-SDKKANLEFLEEEHGIT 119

Query: 125 PDQIEALYQYAKFQ 138
            + + ALY++AKFQ
Sbjct: 120 SEMVNALYKFAKFQ 133

This is the N terminal domain of subunit 6 translation initiation factor eIF3. Length = 133
>gnl|CDD|216479 pfam01399, PCI, PCI domain Back     alignment and domain information
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module Back     alignment and domain information
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 439
KOG2758432 consensus Translation initiation factor 3, subunit 100.0
KOG0687393 consensus 26S proteasome regulatory complex, subun 100.0
COG5187412 RPN7 26S proteasome regulatory complex component, 100.0
PF09440133 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro 100.0
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 100.0
KOG0686466 consensus COP9 signalosome, subunit CSN1 [Posttran 99.73
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 99.61
PF01399105 PCI: PCI domain; InterPro: IPR000717 A homology do 99.6
smart0008888 PINT motif in proteasome subunits, Int-6, Nip-1 an 99.46
smart0075388 PAM PCI/PINT associated module. 99.46
KOG1463411 consensus 26S proteasome regulatory complex, subun 99.17
KOG2908380 consensus 26S proteasome regulatory complex, subun 98.66
COG5159421 RPN6 26S proteasome regulatory complex component [ 98.53
KOG1498439 consensus 26S proteasome regulatory complex, subun 98.03
KOG2753378 consensus Uncharacterized conserved protein, conta 97.71
COG5071439 RPN5 26S proteasome regulatory complex component [ 97.56
KOG2581493 consensus 26S proteasome regulatory complex, subun 97.1
KOG1076843 consensus Translation initiation factor 3, subunit 96.83
PF10075143 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro 96.52
KOG2072 988 consensus Translation initiation factor 3, subunit 96.48
KOG2582422 consensus COP9 signalosome, subunit CSN3 [Posttran 96.13
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 95.67
PF09756188 DDRGK: DDRGK domain; InterPro: IPR019153 This is a 94.41
KOG1497399 consensus COP9 signalosome, subunit CSN4 [Posttran 94.2
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 93.98
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 93.9
PRK15331165 chaperone protein SicA; Provisional 93.5
PRK1543178 ferrous iron transport protein FeoC; Provisional 93.29
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 92.75
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 92.44
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 92.41
KOG2688394 consensus Transcription-associated recombination p 91.91
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 91.68
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 91.45
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 91.35
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 90.62
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 90.61
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 90.41
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 90.29
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 90.22
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 90.13
PRK10803263 tol-pal system protein YbgF; Provisional 89.71
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 89.59
cd00189100 TPR Tetratricopeptide repeat domain; typically con 89.36
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 89.28
KOG3060289 consensus Uncharacterized conserved protein [Funct 88.62
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 88.53
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 88.4
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 88.31
PF1066860 Phage_terminase: Phage terminase small subunit; In 88.2
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 87.53
PF1337173 TPR_9: Tetratricopeptide repeat 87.24
cd00189100 TPR Tetratricopeptide repeat domain; typically con 87.24
TIGR02552135 LcrH_SycD type III secretion low calcium response 85.68
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 85.4
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 85.13
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 84.38
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 83.89
smart0034560 HTH_GNTR helix_turn_helix gluconate operon transcr 83.82
PRK11788389 tetratricopeptide repeat protein; Provisional 83.78
TIGR02552135 LcrH_SycD type III secretion low calcium response 83.49
PF1342844 TPR_14: Tetratricopeptide repeat 82.59
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 82.15
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 82.13
PRK10049765 pgaA outer membrane protein PgaA; Provisional 81.58
PRK11014141 transcriptional repressor NsrR; Provisional 80.57
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1e-141  Score=1039.39  Aligned_cols=423  Identities=62%  Similarity=1.023  Sum_probs=414.2

Q ss_pred             CCcccchhhhccccccccchhhHHHHhhcCCCCHHHHHHHHHHHHccCCCchHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 013640            1 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVA   80 (439)
Q Consensus         1 ~~~~dlt~~~~~~LD~hl~lpll~fl~~~~~y~~~~l~~a~~~llk~TnM~dy~~~~~~~l~~~~~~p~e~~~k~~ev~~   80 (439)
                      |++||||++|+|||||||+|||||||+.+++|++++++++++++|++|||+||+|++|+.+|.++++|++|.+||.+|++
T Consensus         1 m~~yDLT~~ia~fLDrHLifPLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p~a~~ekr~~Vla   80 (432)
T KOG2758|consen    1 MANYDLTQRIAQFLDRHLIFPLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMPNALVEKRTEVLA   80 (432)
T ss_pred             CCccchhHHHHHhHhhHHHHHHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccchHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCChhHHHHhhhcchh--ccHHHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 013640           81 RLKALEERAAPIVSFLQNPNSFQDLRANDQH--YNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALC  158 (439)
Q Consensus        81 ~l~~l~~~~~~~~~~~~~~e~~~~l~~~dk~--~n~~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~  158 (439)
                      ++++|+++++|++.+++||+++++|++ ||.  .|+++|+++|+||+|.++++|+||||+|+||||++|+++||+||.++
T Consensus        81 ~lkeLe~ev~piv~~le~Pd~~~~~~~-~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~  159 (432)
T KOG2758|consen   81 ELKELEEEVAPIVKVLENPDLIAALRS-DKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALV  159 (432)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHh-hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc
Confidence            999999999999999999999999999 555  99999999999999999999999999999999999999999999999


Q ss_pred             cccch-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhcCccchHHHHHHhc
Q 013640          159 TNSER-RLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFN  237 (439)
Q Consensus       159 ~~~~~-k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~~~~~~~~l~~l~~R~WllHwsLf~~fn~~~~~~~l~d~F~  237 (439)
                      .+.++ .++++|||+|+||+++|||.|++++.|||+.||+ +.|.+|..+++|||||+||||||||||++|++.++|+|+
T Consensus       160 ~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs-~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fl  238 (432)
T KOG2758|consen  160 SDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDS-KSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFL  238 (432)
T ss_pred             CCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc-cccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHc
Confidence            98877 7999999999999999999999999999999999 899999999999999999999999999999999999999


Q ss_pred             -cccchhHHHhhchhHHHHHHHHHHHh-cccccchHHHHHHHhhhccCCcchHHHHHHHhhhcCChhHHHHHHHHHHHHh
Q 013640          238 -QDKYLNAIQTNAPHLLRYLATAFIVN-KRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVI  315 (439)
Q Consensus       238 -~~~yl~~Iqt~~p~lLrYlvva~il~-~~r~~~l~~i~~vi~qe~~~Y~Dpit~f~~~lY~~fdF~~aq~~L~~~e~~i  315 (439)
                       .|.|+|+|||+|||+||||++|+|+| ++|++.+||+|+||+||.|+|+||+|+|++|+|++|||++||++|.+||+||
T Consensus       239 y~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl  318 (432)
T KOG2758|consen  239 YQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVL  318 (432)
T ss_pred             cCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence             67899999999999999999999999 5668889999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccccccccccccccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccC
Q 013640          316 LNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKS  395 (439)
Q Consensus       316 ~~D~FL~~~~~~~~~~~~~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~  395 (439)
                      .+||||           .++.++|+|+||++|||+|||||+||+|+|||++|||+++++|+||||+||++||+|||||+.
T Consensus       319 ~nDfFL-----------va~l~~F~E~ARl~ifEtfCRIHqcIti~mLA~kLnm~~eeaErwivnlIr~~rl~AkidSkl  387 (432)
T KOG2758|consen  319 VNDFFL-----------VALLDEFLENARLLIFETFCRIHQCITIDMLADKLNMDPEEAERWIVNLIRTARLDAKIDSKL  387 (432)
T ss_pred             hcchhH-----------HHHHHHHHHHHHHHHHHHHHHHHHheeHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhhcccc
Confidence            999999           899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEeCCCCchhHHHHHHhhhhhhhHHHHHHHHHHhhhhhh
Q 013640          396 GTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQ  436 (439)
Q Consensus       396 g~V~~~~~~~~~yqqvi~kt~~L~~R~q~L~~~i~~~~~~~  436 (439)
                      |+|+|++|+.|+|||+|++||+|++|+|.|+..+++..+.+
T Consensus       388 g~Vvmg~~~~s~~qQ~ie~tksLS~rsq~la~~lek~~~~~  428 (432)
T KOG2758|consen  388 GHVVMGHPTVSPHQQLIEKTKSLSFRSQNLAQQLEKKIQQK  428 (432)
T ss_pred             CceeecCCCCCHHHHHHHhccccchhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999987663

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3 Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins Back     alignment and domain information
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>smart00753 PAM PCI/PINT associated module Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only] Back     alignment and domain information
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8 Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues Back     alignment and domain information
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PRK15431 ferrous iron transport protein FeoC; Provisional Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK11014 transcriptional repressor NsrR; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 2e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 2e-05
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Length = 394 Back     alignment and structure
 Score = 97.2 bits (241), Expect = 2e-22
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 18/302 (5%)

Query: 135 AKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194
               F+   Y+ A     Q        + + + L      E    +    L +       
Sbjct: 106 IALYFDTALYTEALALGAQLLRELKKLDDK-NLLVEVQLLESKTYHALSNLPKARAALTS 164

Query: 195 VDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLR 254
                +      ++Q  + L    L      D            + + +     A   L+
Sbjct: 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLK 224

Query: 255 YLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEV 314
           Y+    I+  +     +     +    +       + +A           Q  +KE ++ 
Sbjct: 225 YMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKE 284

Query: 315 ILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEA 374
           +  D  +   +         L D  LE     I E Y R+     +A +AE + L   + 
Sbjct: 285 LAEDVIVQAHLGT-------LYDTMLEQNLCRIIEPYSRVQ----VAHVAESIQLPMPQV 333

Query: 375 QRWIVNLIRNSKLDAKIDAKSGTVIM--EPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEH 432
           ++ +  +I + K    +D   G +I+  E      YE++++  + +     K+V  L + 
Sbjct: 334 EKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMG----KVVDTLYQK 389

Query: 433 AQ 434
           A+
Sbjct: 390 AK 391
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Length = 84 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 100.0
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 99.96
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 99.86
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 99.73
4b4t_O393 26S proteasome regulatory subunit RPN9; hydrolase, 99.62
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 99.35
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 99.33
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 98.93
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 98.67
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 97.96
4b0z_A229 RPN12, 26S proteasome regulatory subunit RPN12; pr 97.01
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 95.83
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 95.42
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 95.17
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 94.61
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 94.54
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 94.46
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 94.32
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 94.25
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 93.71
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 93.65
3k9i_A117 BH0479 protein; putative protein binding protein, 93.49
1pc2_A152 Mitochondria fission protein; unknown function; NM 93.31
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 93.17
2kat_A115 Uncharacterized protein; NESG, structure, structur 93.11
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 92.92
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 92.92
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 92.92
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 92.91
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 92.88
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 92.81
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 92.75
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 92.66
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 92.57
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 92.54
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 92.43
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 92.41
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 92.39
3q49_B137 STIP1 homology and U box-containing protein 1; E3 92.33
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 92.23
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 92.17
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 92.11
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 92.07
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 91.94
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 91.93
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 91.86
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 91.85
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 91.84
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 91.82
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 91.69
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 91.66
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 91.66
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 91.64
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 91.57
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 91.48
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 91.32
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 91.3
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 91.26
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 91.17
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 91.1
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 90.98
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 90.91
2l6j_A111 TPR repeat-containing protein associated with HSP; 90.76
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 90.74
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 90.7
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 90.7
4eqf_A365 PEX5-related protein; accessory protein, tetratric 90.64
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 90.52
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 90.51
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 90.5
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 90.3
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 90.26
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 90.24
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 90.13
1qbj_A81 Protein (double-stranded RNA specific adenosine D 90.01
3u4t_A272 TPR repeat-containing protein; structural genomics 89.98
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 89.96
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 89.89
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 89.68
3q49_B137 STIP1 homology and U box-containing protein 1; E3 89.53
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 89.29
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 89.22
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 88.91
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 88.76
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 88.48
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 88.38
2heo_A67 Z-DNA binding protein 1; protein DLM1-Z-DNA comple 88.31
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 88.21
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 88.21
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 88.0
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 87.93
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 87.56
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 87.43
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 87.32
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 87.31
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 87.17
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 87.12
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 86.86
4i17_A228 Hypothetical protein; TPR repeats protein, structu 86.83
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 86.79
2gw1_A 514 Mitochondrial precursor proteins import receptor; 86.47
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 86.45
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 86.39
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 86.31
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 86.27
1rz4_A226 Eukaryotic translation initiation factor 3 subuni; 86.19
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 86.14
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 85.97
2gw1_A514 Mitochondrial precursor proteins import receptor; 85.95
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 85.85
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 85.75
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 85.72
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 85.7
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 85.52
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 84.91
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 84.8
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 84.61
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 84.58
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 83.8
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 83.8
2jt1_A77 PEFI protein; solution structure, winged helix-tur 83.72
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 83.54
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 83.45
3u3w_A293 Transcriptional activator PLCR protein; ternary co 83.28
4eqf_A365 PEX5-related protein; accessory protein, tetratric 83.28
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 83.24
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 82.8
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 82.69
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 82.5
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 82.23
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 82.11
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 81.91
4i17_A228 Hypothetical protein; TPR repeats protein, structu 81.79
1sfx_A109 Conserved hypothetical protein AF2008; structural 81.14
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 80.85
3q15_A378 PSP28, response regulator aspartate phosphatase H; 80.4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=2.4e-50  Score=417.85  Aligned_cols=387  Identities=11%  Similarity=0.157  Sum_probs=268.2

Q ss_pred             cccchhhHHHHhhcCCCCH---HHHHHHHHHHHccCCCchHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 013640           16 RHLVFPLLEFLQERQMYPD---EQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPI   92 (439)
Q Consensus        16 ~hl~lpll~fl~~~~~y~~---~~l~~a~~~llk~TnM~dy~~~~~~~l~~~~~~p~e~~~k~~ev~~~l~~l~~~~~~~   92 (439)
                      |.+-++.+.|+...+-.+.   ++.++..+++++.|||+|||..+++++.+....+.....++...+.....+.+.   +
T Consensus        22 P~~~la~~~f~l~~~~~~~~~~~~~~~~l~~~ik~~~ma~~y~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~---~   98 (429)
T 4b4t_R           22 PNYEVSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQE---L   98 (429)
T ss_dssp             --------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHSCCCCSCCSSCSHHHHHHHHHTTTTCCS---S
T ss_pred             CChHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccchhhhhhhhhhhhhhcchHHHH---H
Confidence            4555778888876654433   788999999999999999999999998754333333333333332221111110   1


Q ss_pred             HHhh--CChhHHHHhhhcchhccHHHHHH-hcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHH
Q 013640           93 VSFL--QNPNSFQDLRANDQHYNLQMLHD-RYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALW  169 (439)
Q Consensus        93 ~~~~--~~~e~~~~l~~~dk~~n~~~l~~-~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lw  169 (439)
                      ++.+  .+++..+.+.+     .+...++ +.| +.|++++.+++|+||++||||++|.+++..++..|++++.+++.+|
T Consensus        99 ~~~~~~~n~~~l~~l~~-----~~~~~~~~~~~-e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l  172 (429)
T 4b4t_R           99 YNELCKKNESKIKELNE-----KIQKLEEDDEG-ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVML  172 (429)
T ss_dssp             CTTTTCCSSCCHHHHHH-----HHHHHHHCCSC-CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHhhccc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            1111  11222222221     1233344 455 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhcCccchHHHHHHhccccchhHHHhhc
Q 013640          170 GKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNA  249 (439)
Q Consensus       170 g~la~eIl~~~w~~a~~~l~klke~id~~~~~~~~l~~l~~R~WllHwsLf~~fn~~~~~~~l~d~F~~~~yl~~Iqt~~  249 (439)
                      +.+++.++.+||..+...++|++.+++++++| .+...+....|++||+.   +++..+...|+|+|.+..+...+  .+
T Consensus       173 ~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~-~~~~~lk~~~gl~~l~~---r~f~~Aa~~f~e~~~t~~~~e~~--~~  246 (429)
T 4b4t_R          173 TIARLGFFYNDQLYVKEKLEAVNSMIEKGGDW-ERRNRYKTYYGIHCLAV---RNFKEAAKLLVDSLATFTSIELT--SY  246 (429)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCT-HHHHHHHHHHHHGGGGT---SCHHHHHHHHHHHHHHSCCSCHH--HH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhhhcCCCH-HHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHhccCCccchh--hH
Confidence            99999999999999999999999999997776 34556778889999986   45667888899988766555544  34


Q ss_pred             hhHHHHHHHHHHHhccccc----ch--HHHHHHHhhhccCCcchHHHHHHHhhhcCChhHHHHHHHHHHHHhcCCccccc
Q 013640          250 PHLLRYLATAFIVNKRRRP----QF--KDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGK  323 (439)
Q Consensus       250 p~lLrYlvva~il~~~r~~----~l--~~i~~vi~qe~~~Y~Dpit~f~~~lY~~fdF~~aq~~L~~~e~~i~~D~FL~~  323 (439)
                      ..++.|.+++++++.+|.+    ++  +++..+...+  +.-+++++|+.++|....++-++..+..+...+..|+||  
T Consensus       247 ~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~--p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l--  322 (429)
T 4b4t_R          247 ESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTT--AALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYL--  322 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTS--
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCC--hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHH--
Confidence            5688999999999998844    33  4455544443  123569999999999776555566677788899999999  


Q ss_pred             ccccccccccccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCC
Q 013640          324 RVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPT  403 (439)
Q Consensus       324 ~~~~~~~~~~~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~  403 (439)
                               ++|.++|.+++|..++.+||+||++|+|+.||+.||+|++++|+||++||.+|+|+||||+++|+|++++|
T Consensus       323 ---------~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~  393 (429)
T 4b4t_R          323 ---------NRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRP  393 (429)
T ss_dssp             ---------TTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCC
Confidence                     89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C--chhHHHHHHhhhhhhhHHHHHHHHHH
Q 013640          404 H--PNVYEQLIDHTKGLSGRTYKLVGQLL  430 (439)
Q Consensus       404 ~--~~~yqqvi~kt~~L~~R~q~L~~~i~  430 (439)
                      +  +++||++|++||.|++|+|+|+++|+
T Consensus       394 d~~~~~y~~~i~~gd~Ll~riqkl~~~i~  422 (429)
T 4b4t_R          394 DNKNAQYHLLVKQGDGLLTKLQKYGAAVR  422 (429)
T ss_dssp             -----------------------------
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8  58999999999999999999999986
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Back     alignment and structure
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Back     alignment and structure
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe} Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 439
d1ufma_84 a.4.5.47 (A:) COP9 signalosome complex subunit 4, 5e-14
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 84 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (158), Expect = 5e-14
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 335 LRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAK 394
           L    +E+  L   + Y  I        L   L +   +A++    +I   +++  ID  
Sbjct: 12  LDRAVIEHNLLSASKLYNNIT----FEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 67

Query: 395 SGTVIMEPTHPN 406
            G V  E    +
Sbjct: 68  DGIVHFETREAS 79

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
d1ufma_84 COP9 signalosome complex subunit 4, GSN4 {Mouse (M 99.26
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 95.13
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 92.76
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 91.95
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 91.76
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 90.98
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 89.68
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 89.67
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 89.11
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 87.49
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 85.89
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 85.74
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 85.68
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 85.6
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 85.04
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 84.91
d1j5ya165 Putative transcriptional regulator TM1602, N-termi 84.02
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 83.55
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 82.03
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 81.89
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 80.81
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=5e-12  Score=101.32  Aligned_cols=57  Identities=18%  Similarity=0.290  Sum_probs=53.2

Q ss_pred             HHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCCc
Q 013640          349 ETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHP  405 (439)
Q Consensus       349 e~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~~  405 (439)
                      ..+-++|.+|+|+.||+.||++++++|.||+++|.+++|+||||+++|+|+++++..
T Consensus        22 ~~is~~Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~e~   78 (84)
T d1ufma_          22 LSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA   78 (84)
T ss_dssp             HHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred             HHHHHhhceeeHHHHHHHHCCCHHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCCCc
Confidence            357788999999999999999999999999999999999999999999999988763
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure