Citrus Sinensis ID: 013646

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MLNLVKPRFLLYQMVSKLPRKHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK
cccccccccccEEEEEEccccccccccEEEEEEEEcccccccccccccHHHHHHHHcccccccccHHHHHHHHHHcccEEEEEcccccEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccEEEcccccccEEEEEEEEcccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccEEEEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHcc
cccccccccccccEEEEccccccccccEEEEEEEEcccHHHcccccccHHHHHHHcccccEccccHHHHHHHHHHccccEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHHcEcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHccccccHHHcccccHHHHHHHHHHHccHHHEEEEEEcccHHHHHHHHHHHccccccccccccccccEccccEEEEccccccccEEEEEEEccccccccccHHHHHHHHHHHcEEEcccccccccccccHHHHHcccccccEEEEEEEEEEccccEEEEEEEEEcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccc
MLNLVKPRFLLYQMVSklprkhqwyspvaSISLYVGcgsiyespisfgTTHLLERMAFRSTRNRSHLRIVREVEAIggnvqasasreqmGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAgysgalanpllapesAINRLNSTLLEEFvaenytgprmvlaasgvehdqlvsvaepllsdlpsihpreepksvytggdyrcqadsgdqLTHFVLAFelpggwhkdkdaMTLTVLQMLLggggsfsaggpgkgmYSRLYRRVLnefpqvqsfsafsniynhsgmfgiqgttgsdFVSKAIDLAARELIsvatpgevdqVQLDRAKQSTKSAILMNLESrmvvsedigrqvltygerkpveHFLKTVEGVTAKDIASVAQKLLsspltmasygdvinvpsydavsskfksk
MLNLVKPRFLLYQMVSKLPRKHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVeaiggnvqasasreqMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPllsdlpsihpreepksvytGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISvatpgevdqvqldrakqstksailmnlesrmvvseDIGRQVltygerkpveHFLKTVEGVTAKDIASVAQKLLSSPLtmasygdvinvpsydavsskfksk
MLNLVKPRFLLYQMVSKLPRKHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLggggsfsaggpgkgMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK
***LVKPRFLLYQMVSKLPRKHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK***********SLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPL***************VYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEV**************AILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSY**********
*******RFLLYQMVSKLPRKHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLL*******************DYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSA*****GMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFK**
MLNLVKPRFLLYQMVSKLPRKHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYD*********
*LNLVKPRFLLYQMVSKLPRKHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFK**
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MLNLVKPRFLLYQMVSKLPRKHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query439 2.2.26 [Sep-21-2011]
P29677504 Mitochondrial-processing N/A no 0.938 0.817 0.756 0.0
Q9ZU25503 Probable mitochondrial-pr yes no 0.929 0.811 0.665 1e-154
O04308499 Probable mitochondrial-pr no no 0.929 0.817 0.657 1e-150
P11914482 Mitochondrial-processing yes no 0.897 0.817 0.353 9e-51
P22695453 Cytochrome b-c1 complex s yes no 0.895 0.867 0.326 1e-50
P97997474 Mitochondrial-processing N/A no 0.881 0.816 0.331 8e-49
Q9DB77453 Cytochrome b-c1 complex s yes no 0.904 0.876 0.305 4e-47
P32551452 Cytochrome b-c1 complex s yes no 0.904 0.878 0.302 2e-46
Q3SZ71490 Mitochondrial-processing yes no 0.908 0.814 0.299 1e-45
P23004453 Cytochrome b-c1 complex s no no 0.904 0.876 0.300 1e-45
>sp|P29677|MPPA_SOLTU Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1 Back     alignment and function desciption
 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/414 (75%), Positives = 365/414 (88%), Gaps = 2/414 (0%)

Query: 26  SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 85
           +P ASI LYV CGSIYE+P S+G THLLERMAF+ST NRSHLRIVRE+EAIGGNV ASAS
Sbjct: 93  NPAASIGLYVDCGSIYETPASYGATHLLERMAFKSTLNRSHLRIVREIEAIGGNVTASAS 152

Query: 86  REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLE 145
           RE M Y++DALKTYVP+MVE+L DCVRNP FLDWEV EQL KVK+EISE S NPQ LLLE
Sbjct: 153 REHMIYTYDALKTYVPQMVEMLADCVRNPAFLDWEVKEQLEKVKAEISEYSKNPQHLLLE 212

Query: 146 AIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAE 205
           A+HSAGY+G   N L+A E+ INRLNST+LEEFVAENYT PRMVLAASGVEH++ + VAE
Sbjct: 213 AVHSAGYAGPYGNSLMATEATINRLNSTVLEEFVAENYTAPRMVLAASGVEHEEFLKVAE 272

Query: 206 PLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQ 265
           PLLSDLP +   EEPK VY GGDYRCQAD+  ++THF LAFE+PGGW  +K++MTLTVLQ
Sbjct: 273 PLLSDLPKVATIEEPKPVYVGGDYRCQADA--EMTHFALAFEVPGGWMSEKESMTLTVLQ 330

Query: 266 MLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFV 325
           ML+GGGGSFSAGGPGKGMYSRLY RVLN++PQ+ +FSAFS+IYN++G+FGIQGTT SDF 
Sbjct: 331 MLMGGGGSFSAGGPGKGMYSRLYLRVLNQYPQIHAFSAFSSIYNNTGLFGIQGTTSSDFG 390

Query: 326 SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 385
            +A+D+A +ELI+VA P EVDQVQL+RAKQ+TKSAILMNLESRMV SEDIGRQ+LTYGER
Sbjct: 391 PQAVDVAVKELIAVANPSEVDQVQLNRAKQATKSAILMNLESRMVASEDIGRQLLTYGER 450

Query: 386 KPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK 439
            PVEHFLK ++ V+AKDIASV QKL+SSPLTMASYGDV+++PSYDAVSS+F+SK
Sbjct: 451 NPVEHFLKAIDAVSAKDIASVVQKLISSPLTMASYGDVLSLPSYDAVSSRFRSK 504
This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. Mediate formation of the complex between cytochromes c and c1.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 0EC: .EC: 2EC: .EC: 2
>sp|Q9ZU25|MPPA1_ARATH Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1 Back     alignment and function description
>sp|O04308|MPPA2_ARATH Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=MPPA2 PE=1 SV=1 Back     alignment and function description
>sp|P11914|MPPA_YEAST Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAS2 PE=1 SV=1 Back     alignment and function description
>sp|P22695|QCR2_HUMAN Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3 Back     alignment and function description
>sp|P97997|MPPA_BLAEM Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1 Back     alignment and function description
>sp|Q9DB77|QCR2_MOUSE Cytochrome b-c1 complex subunit 2, mitochondrial OS=Mus musculus GN=Uqcrc2 PE=1 SV=1 Back     alignment and function description
>sp|P32551|QCR2_RAT Cytochrome b-c1 complex subunit 2, mitochondrial OS=Rattus norvegicus GN=Uqcrc2 PE=1 SV=2 Back     alignment and function description
>sp|Q3SZ71|MPPB_BOVIN Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1 Back     alignment and function description
>sp|P23004|QCR2_BOVIN Cytochrome b-c1 complex subunit 2, mitochondrial OS=Bos taurus GN=UQCRC2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
225445041506 PREDICTED: mitochondrial-processing pept 0.938 0.814 0.823 0.0
356513189511 PREDICTED: mitochondrial-processing pept 0.936 0.804 0.818 0.0
356513191508 PREDICTED: mitochondrial-processing pept 0.936 0.809 0.818 0.0
356523720509 PREDICTED: mitochondrial-processing pept 0.936 0.807 0.815 0.0
255546263507 mitochondrial processing peptidase alpha 0.943 0.816 0.799 0.0
357520795510 Mitochondrial-processing peptidase subun 0.938 0.807 0.811 0.0
217075747510 unknown [Medicago truncatula] gi|3885152 0.938 0.807 0.806 0.0
225442426506 PREDICTED: mitochondrial-processing pept 0.938 0.814 0.777 0.0
449487989505 PREDICTED: mitochondrial-processing pept 0.938 0.815 0.791 0.0
449446550505 PREDICTED: mitochondrial-processing pept 0.938 0.815 0.789 0.0
>gi|225445041|ref|XP_002283310.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297738729|emb|CBI27974.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/414 (82%), Positives = 382/414 (92%), Gaps = 2/414 (0%)

Query: 26  SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 85
           +P ASI LYV CGSIYE+PISFG THLLERMAF+ST NRS+LR++REVEAIGGNV ASAS
Sbjct: 95  NPAASIGLYVDCGSIYETPISFGATHLLERMAFKSTINRSYLRVIREVEAIGGNVTASAS 154

Query: 86  REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLE 145
           REQMGY+FDALKTYVPEMVELLID VRNP FLDWEV+EQL KVK+EI E SNNPQ LLLE
Sbjct: 155 REQMGYTFDALKTYVPEMVELLIDSVRNPAFLDWEVSEQLEKVKAEIGEASNNPQGLLLE 214

Query: 146 AIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAE 205
           A+HSAGYSGALANPLLAPESAINRL+ST+LEEFVA NYT PRMVLAASGVEH++L+SVAE
Sbjct: 215 ALHSAGYSGALANPLLAPESAINRLDSTILEEFVALNYTAPRMVLAASGVEHEELLSVAE 274

Query: 206 PLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQ 265
           PLLSDLPS+   EEPKSVY GGDYRCQADSG   THF LAFE+PGGWHK+K+AMTLTVLQ
Sbjct: 275 PLLSDLPSVPRPEEPKSVYVGGDYRCQADSGK--THFALAFEVPGGWHKEKEAMTLTVLQ 332

Query: 266 MLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFV 325
           ML+GGGGSFSAGGPGKGMYSRLY RVLN +PQ+QSFSAF++IYN++G+FGIQ TTGSDFV
Sbjct: 333 MLMGGGGSFSAGGPGKGMYSRLYLRVLNTYPQIQSFSAFNSIYNNTGLFGIQATTGSDFV 392

Query: 326 SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 385
           SKAID+AA+EL++VATPG+VDQVQLDRAKQ+TK+A+LMNLESRMV SEDIGRQ+LTYGER
Sbjct: 393 SKAIDIAAKELVAVATPGQVDQVQLDRAKQTTKTAVLMNLESRMVASEDIGRQILTYGER 452

Query: 386 KPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK 439
           KPV+HFLK V+ VT KDIAS+ QKLLSSPLTMASYGDVI VPSY+ VSSKF+SK
Sbjct: 453 KPVDHFLKAVDEVTLKDIASITQKLLSSPLTMASYGDVIFVPSYENVSSKFQSK 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356513189|ref|XP_003525296.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356513191|ref|XP_003525297.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356523720|ref|XP_003530483.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|255546263|ref|XP_002514191.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] gi|223546647|gb|EEF48145.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357520795|ref|XP_003630686.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] gi|355524708|gb|AET05162.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|217075747|gb|ACJ86233.1| unknown [Medicago truncatula] gi|388515299|gb|AFK45711.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225442426|ref|XP_002283426.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297743169|emb|CBI36036.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449487989|ref|XP_004157901.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449446550|ref|XP_004141034.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
TAIR|locus:2034096503 AT1G51980 [Arabidopsis thalian 0.929 0.811 0.631 1.2e-136
TAIR|locus:2088309499 MPPalpha "mitochondrial proces 0.929 0.817 0.623 1.8e-133
ASPGD|ASPL0000062345570 AN1104 [Emericella nidulans (t 0.460 0.354 0.330 7.5e-54
GENEDB_PFALCIPARUM|PFE1155c534 PFE1155c "mitochondrial proces 0.906 0.745 0.330 5.6e-52
UNIPROTKB|Q8I3N3534 PFE1155c "Mitochondrial proces 0.906 0.745 0.330 5.6e-52
SGD|S000001066482 MAS2 "Larger subunit of the mi 0.886 0.807 0.330 2.2e-50
ZFIN|ZDB-GENE-030131-1269454 uqcrc2b "ubiquinol-cytochrome 0.908 0.878 0.316 2e-49
ZFIN|ZDB-GENE-030131-5809517 pmpca "peptidase (mitochondria 0.936 0.794 0.299 2.3e-48
UNIPROTKB|P22695453 UQCRC2 "Cytochrome b-c1 comple 0.904 0.876 0.317 3.7e-48
ZFIN|ZDB-GENE-040718-405460 uqcrc2a "ubiquinol-cytochrome 0.927 0.884 0.315 4.7e-48
TAIR|locus:2034096 AT1G51980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1338 (476.1 bits), Expect = 1.2e-136, P = 1.2e-136
 Identities = 260/412 (63%), Positives = 324/412 (78%)

Query:    26 SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 85
             +P ASI LYV CGSIYE+P   G THLLERMAF+ST NR+H R+VRE+EAIGGN  ASAS
Sbjct:    96 NPAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASAS 155

Query:    86 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLE 145
             REQM Y+ DALKTYVPEMVE+LID VRNP FLDWEVNE+L K+K EI+E++ NP   LLE
Sbjct:   156 REQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRKMKVEIAELAKNPMGFLLE 215

Query:   146 AIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAE 205
             AIHSAGYSG LA+PL APESA++RLN  LLEEF+ EN+T  RMVLAASGVEH++L+ VAE
Sbjct:   216 AIHSAGYSGPLASPLYAPESALDRLNGELLEEFMTENFTAARMVLAASGVEHEELLKVAE 275

Query:   206 PLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQ 265
             PL SDLP++ P+  PKS Y GGD+R    +G + THF +AFE+PG W+ +K+A+T TVLQ
Sbjct:   276 PLTSDLPNVPPQLAPKSQYVGGDFR--QHTGGEATHFAVAFEVPG-WNNEKEAVTATVLQ 332

Query:   266 MLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFV 325
             ML+              M+S LYRRVLNE+ +VQS +AF++I+N +G+FGI G +   F 
Sbjct:   333 MLMGGGGSFSAGGPGKGMHSWLYRRVLNEYQEVQSCTAFTSIFNDTGLFGIYGCSSPQFA 392

Query:   326 SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 385
             +KAI+LAA+EL  VA  G+V+Q  LDRAK +TKSA+LMNLESRM+ +EDIGRQ+LTYGER
Sbjct:   393 AKAIELAAKELKDVAG-GKVNQAHLDRAKAATKSAVLMNLESRMIAAEDIGRQILTYGER 451

Query:   386 KPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFK 437
             KPV+ FLK+V+ +T KDIA    K++S PLTM S+GDV+ VPSYD +SSKF+
Sbjct:   452 KPVDQFLKSVDQLTLKDIADFTSKVISKPLTMGSFGDVLAVPSYDTISSKFR 503
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0009060 "aerobic respiration" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2088309 MPPalpha "mitochondrial processing peptidase alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062345 AN1104 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE1155c PFE1155c "mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I3N3 PFE1155c "Mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
SGD|S000001066 MAS2 "Larger subunit of the mitochondrial processing protease (MPP)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1269 uqcrc2b "ubiquinol-cytochrome c reductase core protein IIb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5809 pmpca "peptidase (mitochondrial processing) alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P22695 UQCRC2 "Cytochrome b-c1 complex subunit 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-405 uqcrc2a "ubiquinol-cytochrome c reductase core protein IIa" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9DB77QCR2_MOUSENo assigned EC number0.30540.90430.8763yesno
P32551QCR2_RATNo assigned EC number0.30290.90430.8783yesno
P29677MPPA_SOLTU1, ., 1, 0, ., 2, ., 20.75600.93840.8174N/Ano
Q4W6B5MPPB_DICDI3, ., 4, ., 2, 4, ., 6, 40.31440.91110.8528yesno
P11914MPPA_YEAST3, ., 4, ., 2, 4, ., 6, 40.35370.89740.8174yesno
Q9ZU25MPPA1_ARATH3, ., 4, ., 2, 4, ., 6, 40.66500.92930.8111yesno
P22695QCR2_HUMANNo assigned EC number0.32680.89520.8675yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.640.991
3rd Layer3.4.240.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 3e-54
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 7e-42
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 2e-30
TIGR02110 696 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis 6e-04
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score =  186 bits (474), Expect = 3e-54
 Identities = 106/402 (26%), Positives = 172/402 (42%), Gaps = 31/402 (7%)

Query: 25  YSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 84
            +P  S+ ++V  GS  E     G  H LE MAF+ T       +    E +GG + A  
Sbjct: 35  TAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFT 94

Query: 85  SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLL 144
           S +   Y    L   + + ++LL D + NP F + EV  +   +  EI    ++P  L  
Sbjct: 95  SFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAF 154

Query: 145 EAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVS 202
           E +  A Y    L  P+L  E +I  +    L++F  + Y    MVL   G V+ +++V 
Sbjct: 155 ERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVE 214

Query: 203 VAEPLLSDLPSIHPREEPKSVYTGGDYRC-----QADSGDQLTHFVLAFELPGGWHKDKD 257
           + E    DLP   P  +       G  R            +     L +  P  +    D
Sbjct: 215 LIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDLEQAWLALGYPGP-DYDSPDD 273

Query: 258 AMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 317
              L +L  LLGG           G  SRL++ +  +     S S+FS+  + SG+F I 
Sbjct: 274 YAALLLLNGLLGG-----------GFSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSIY 322

Query: 318 GTTG-------SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMV 370
             T        ++ V + +    + L    T  E     LD AKQ     +L++L+S   
Sbjct: 323 AGTAPENPEKTAELVEEILKALKKGLKGPFTEEE-----LDAAKQLLIGLLLLSLDSPSS 377

Query: 371 VSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLS 412
           ++E +G+ +L  G    +E  L+ +E VT +D+ +VA+KLL+
Sbjct: 378 IAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLA 419

Length = 438
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 439
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
KOG2067472 consensus Mitochondrial processing peptidase, alph 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 100.0
PRK15101961 protease3; Provisional 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 100.0
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.98
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.96
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.91
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.91
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.9
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.89
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.86
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 99.86
PTZ004321119 falcilysin; Provisional 99.85
KOG0959974 consensus N-arginine dibasic convertase NRD1 and r 99.79
KOG2019998 consensus Metalloendoprotease HMP1 (insulinase sup 99.78
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 99.45
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 98.2
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 98.01
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 98.01
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 96.95
KOG0960 467 consensus Mitochondrial processing peptidase, beta 96.94
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 96.79
PHA03081 595 putative metalloprotease; Provisional 96.36
KOG2067472 consensus Mitochondrial processing peptidase, alph 95.92
KOG2583 429 consensus Ubiquinol cytochrome c reductase, subuni 85.17
PF0985131 SHOCT: Short C-terminal domain; InterPro: IPR01864 84.97
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=9.1e-60  Score=413.70  Aligned_cols=419  Identities=30%  Similarity=0.543  Sum_probs=385.7

Q ss_pred             hhhheeeecCC-----CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeee
Q 013646           10 LLYQMVSKLPR-----KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA   84 (439)
Q Consensus        10 ~~~~~~~~l~n-----~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~   84 (439)
                      |... +++|+|     +++++.+++.+++|+++|+++|++++.|.+||+|||.|+|+++++...+..++++.|+.+|++|
T Consensus        32 P~t~-vttL~NGlrVaTE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAyt  110 (467)
T KOG0960|consen   32 PETE-VTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYT  110 (467)
T ss_pred             Ccce-EEEcCCCcEEEeccCCCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhcccc
Confidence            3344 899999     8888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 013646           85 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP  163 (439)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~  163 (439)
                      +++.|.|..++.++++++++++|.|++.+..+.+.+|+++|..|+.|++....+......+.+++..| ++|++++++|+
T Consensus       111 SReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp  190 (467)
T KOG0960|consen  111 SREQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGP  190 (467)
T ss_pred             cccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccCh
Confidence            99999999999999999999999999999999999999999999999999988889999999999999 99999999999


Q ss_pred             hhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCC---CCC-CCCcccCCceEeecCCCCC
Q 013646          164 ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHP---REE-PKSVYTGGDYRCQADSGDQ  238 (439)
Q Consensus       164 ~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~  238 (439)
                      .+.|++|+.+||++|.+.+|.+.+|+++.+| ++++++.++++++||.++....   ++. +++.|.+.+++...+ ..+
T Consensus       191 ~enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd-~lP  269 (467)
T KOG0960|consen  191 SENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDD-DLP  269 (467)
T ss_pred             hhhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCceeeecCC-CCc
Confidence            9999999999999999999999999999999 9999999999999999765332   222 345578888877655 238


Q ss_pred             ceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEE
Q 013646          239 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG  318 (439)
Q Consensus       239 ~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~  318 (439)
                      .+++.+++.+++ | ++||+.++.+.+.++|....+.+||...+  ++|-+.+-+. .++-++.++...|.++|.|++|+
T Consensus       270 ~a~~AiAVEG~~-w-~~pD~~~l~van~iiG~wdr~~g~g~~~~--s~La~~~~~~-~l~~sfqsFnt~YkDTGLwG~y~  344 (467)
T KOG0960|consen  270 LAHIAIAVEGVS-W-AHPDYFALMVANTIIGNWDRTEGGGRNLS--SRLAQKIQQD-QLCHSFQSFNTSYKDTGLWGIYF  344 (467)
T ss_pred             hhheeeeEecCC-c-CCccHHHHHHHHHHhhhhhcccCCccCCc--cHHHHHHHHH-HHHHHHhhhhcccccccceeEEE
Confidence            999999999986 4 99999999999999999877777777555  9998888764 67888888889999999999999


Q ss_pred             ee-ChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Q 013646          319 TT-GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEG  397 (439)
Q Consensus       319 ~~-~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  397 (439)
                      .+ ++..++..+..+..++.++..  .+|+.|+++||++++.++.+.++...-.+..++++++.+|+..+..+..+.|++
T Consensus       345 V~~~~~~iddl~~~vl~eW~rL~~--~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grri~l~El~~rId~  422 (467)
T KOG0960|consen  345 VTDNLTMIDDLIHSVLKEWMRLAT--SVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRRIPLAELEARIDA  422 (467)
T ss_pred             EecChhhHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCcCChHHHHHHHhh
Confidence            99 788999999999999999987  499999999999999999999999999999999999989998999999999999


Q ss_pred             CCHHHHHHHHHHhhC-CCCeEEEecCCCCCCCHHHHHhhhh
Q 013646          398 VTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK  437 (439)
Q Consensus       398 vt~~dv~~~a~~~l~-~~~~~~v~g~~~~~~~~~~~~~~~~  437 (439)
                      ||.+||++++.+|+. .++.++.+||...+|+++.++..+.
T Consensus       423 vt~~~Vr~va~k~iyd~~iAia~vG~ie~lpdy~~irs~m~  463 (467)
T KOG0960|consen  423 VTAKDVREVASKYIYDKDIAIAAVGPIEGLPDYNRIRSGMS  463 (467)
T ss_pred             ccHHHHHHHHHHHhhcCCcceeeecccccCchHHHHhccch
Confidence            999999999999998 8899999999999999999987664

>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
1hr6_A475 Yeast Mitochondrial Processing Peptidase Length = 4 1e-49
3cwb_B441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 1e-48
3bcc_B422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 2e-47
1bcc_B422 Cytochrome Bc1 Complex From Chicken Length = 422 3e-47
1sqb_B453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 2e-44
1qcr_B423 Crystal Structure Of Bovine Mitochondrial Cytochrom 2e-44
1bgy_B439 Cytochrome Bc1 Complex From Bovine Length = 439 2e-44
1bcc_A446 Cytochrome Bc1 Complex From Chicken Length = 446 4e-42
1qcr_A446 Crystal Structure Of Bovine Mitochondrial Cytochrom 9e-38
1bgy_A446 Cytochrome Bc1 Complex From Bovine Length = 446 1e-37
1sqb_A480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 1e-37
3cwb_A446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 8e-36
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 1e-33
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 2e-33
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 3e-28
1ezv_B352 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 6e-12
3ami_A445 The Crystal Structure Of The M16b Metallopeptidase 2e-07
3amj_C437 The Crystal Structure Of The Heterodimer Of M16b Pe 2e-07
1kb9_A431 Yeast Cytochrome Bc1 Complex Length = 431 3e-05
1ezv_A430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 3e-05
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure 
Iteration: 1

 Score =  194 bits (492), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/403 (32%), Positives = 212/403 (52%), Gaps = 14/403 (3%)
Query: 29  ASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQ 88
           +++ LY+  GS +E     G TH+L+R+AF+ST +     +   +E +GGN Q ++SRE 
Sbjct: 27  SALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSREN 86
Query: 89  MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIH 148
           + Y        V +M++L+ + VR P   + E+ EQ    + EI EV   P+ +L E +H
Sbjct: 87  LMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLH 146
Query: 149 SAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPL 207
           +A YSG  L +PL+ P   I  ++   L ++  + YT    V A  GV H++ + +    
Sbjct: 147 TAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKY 206
Query: 208 LSDLPSIHPREEPK-SVYTGGDYRCQADS---GD--QLTHFVLAFE-LPGGWHKDKDAMT 260
           L D  S HP    K + YTGG+  C   +   G+  +L H  + FE LP       D   
Sbjct: 207 LGDWQSTHPPITKKVAQYTGGE-SCIPPAPVFGNLPELFHIQIGFEGLP---IDHPDIYA 262
Query: 261 LTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 320
           L  LQ LL              MYSRLY  VLN++  V++  AF++ Y+ SG+FGI  + 
Sbjct: 263 LATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSC 322
Query: 321 GSDFVSKAIDLAARELISVATPGE--VDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQ 378
                 +A+++ A+++ +     +  + + ++ RAK   KS++LMNLES++V  ED+GRQ
Sbjct: 323 IPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQ 382
Query: 379 VLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYG 421
           VL +G + PV   +  +E +   DI+ VA+ + +  +  A  G
Sbjct: 383 VLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNG 425
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 352 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex Length = 431 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-167
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 1e-165
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 1e-153
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 1e-151
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 1e-137
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 1e-108
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 1e-106
3eoq_A406 Putative zinc protease; two similar domains of bet 1e-87
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 2e-53
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 8e-53
3gwb_A434 Peptidase M16 inactive domain family protein; pept 2e-46
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 4e-36
3go9_A492 Insulinase family protease; IDP00573, structural g 3e-32
3ih6_A197 Putative zinc protease; bordetella pertussis toham 1e-15
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 4e-15
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 9e-14
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 4e-10
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
 Score =  475 bits (1224), Expect = e-167
 Identities = 119/408 (29%), Positives = 198/408 (48%), Gaps = 9/408 (2%)

Query: 25  YSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 84
           Y+P + I L++  GS YE+  + GT+HLL   +  +T+  S  +I R +EA+GG +  ++
Sbjct: 41  YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTS 100

Query: 85  SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLL 144
           +RE M Y+ + L+  V  ++E L++    P F  WEV     +++ + +    NPQ+ ++
Sbjct: 101 TRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVI 160

Query: 145 EAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVA 204
           E +H+A Y  ALAN L  P+  I ++    L ++V  ++T  RM L   GV H  L  VA
Sbjct: 161 ENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVA 220

Query: 205 EPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVL 264
           E  L+    +       + Y GG+ R Q      L H  L  E         +A   +VL
Sbjct: 221 EQFLNIRGGLGLSGAK-AKYHGGEIREQNGD--SLVHAALVAE--SAAIGSAEANAFSVL 275

Query: 265 QMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDF 324
           Q +LG G        G    S LY+ V     Q    SAF+  Y+ SG+FG    + +  
Sbjct: 276 QHVLGAG---PHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAAS 332

Query: 325 VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE 384
               I  A  ++ ++A  G +    +  AK   K+  LM++ES     +++G Q L  G 
Sbjct: 333 AGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGS 391

Query: 385 RKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 432
             P    L+ ++ V   D+ + A+K +S   +MA+ G++ + P  D +
Sbjct: 392 YTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 439
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Length = 197 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 100.0
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
3go9_A492 Insulinase family protease; IDP00573, structural g 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 99.97
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.97
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.92
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.44
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 98.23
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 98.21
3eoq_A 406 Putative zinc protease; two similar domains of bet 98.19
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 98.15
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 98.13
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 98.13
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 98.09
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 98.09
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 98.07
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 98.06
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 98.04
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 98.01
3go9_A492 Insulinase family protease; IDP00573, structural g 96.4
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-59  Score=463.56  Aligned_cols=424  Identities=33%  Similarity=0.527  Sum_probs=380.8

Q ss_pred             hhhheeeecCC-----CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeee
Q 013646           10 LLYQMVSKLPR-----KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA   84 (439)
Q Consensus        10 ~~~~~~~~l~n-----~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~   84 (439)
                      |.++ .++|+|     ..+.+.|.+++.+++++|+++|++++.|++||++||+|+||++++..++.+.++..|+.+|++|
T Consensus         4 ~~~~-~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t   82 (475)
T 1hr6_A            4 DNFK-LSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTS   82 (475)
T ss_dssp             TCCE-EEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEE
T ss_pred             CCce-EEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEE
Confidence            4445 689999     4455678999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 013646           85 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP  163 (439)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~  163 (439)
                      +.++|+|.+++++++++.+|+++.+++.+|.|++++|+++|+.+++|++...++|...+.+.+...+| ++||+++..|+
T Consensus        83 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~  162 (475)
T 1hr6_A           83 SRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICP  162 (475)
T ss_dssp             CSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCC
T ss_pred             ccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999889999999999999999 99999999999


Q ss_pred             hhhhccCCHHHHHHHHHhhCCCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCCC-CCCCCcccCCceEeecC----CCCC
Q 013646          164 ESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQAD----SGDQ  238 (439)
Q Consensus       164 ~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~  238 (439)
                      .+.|.+++.++|++||+++|.|+|++++|+|++++++.++++++|+.|+.+..+ ..+.+.+.+....+...    ....
T Consensus       163 ~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (475)
T 1hr6_A          163 RGLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPE  242 (475)
T ss_dssp             GGGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCC
T ss_pred             HHHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCcc
Confidence            999999999999999999999999999999999999999999999999865433 11122333333333311    2347


Q ss_pred             ceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEE
Q 013646          239 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG  318 (439)
Q Consensus       239 ~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~  318 (439)
                      ++.+.++|++++  ..+++.+++.|++.+||++++|+.||+|++++++||+.||++.|++|+++++...+.+.|.|.+++
T Consensus       243 ~~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~  320 (475)
T 1hr6_A          243 LFHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISL  320 (475)
T ss_dssp             CEEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEE
T ss_pred             ceEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEE
Confidence            889999999876  578899999999999999999999999999999999999999999999999888777889999999


Q ss_pred             eeChhhHHHHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 013646          319 TTGSDFVSKAIDLAARELISVAT---PGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTV  395 (439)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~l~~---~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  395 (439)
                      .++|+++.++++.+.+++.++.+   .| ++++||+++|+.++.++....+++..++..++..++..+.+.+..++.+.|
T Consensus       321 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  399 (475)
T 1hr6_A          321 SCIPQAAPQAVEVIAQQMYNTFANKDLR-LTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKI  399 (475)
T ss_dssp             EECGGGHHHHHHHHHHHHHTTTTCTTSC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred             EeCHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999999999999999987   66 999999999999999999999999999988888665466666688899999


Q ss_pred             hcCCHHHHHHHHHHhhCC----------CCeEEEecCCCCCCCHHHHHhhhh
Q 013646          396 EGVTAKDIASVAQKLLSS----------PLTMASYGDVINVPSYDAVSSKFK  437 (439)
Q Consensus       396 ~~vt~~dv~~~a~~~l~~----------~~~~~v~g~~~~~~~~~~~~~~~~  437 (439)
                      .+||++||++++++++..          +.+++++||...+|+.+++...+.
T Consensus       400 ~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~  451 (475)
T 1hr6_A          400 EDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG  451 (475)
T ss_dssp             HTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence            999999999999999974          789999999989999999987764
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 439
d1ppjb2204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 1e-41
d1hr6a2237 d.185.1.1 (A:234-470) Mitochondrial processing pep 3e-40
d1hr6b2217 d.185.1.1 (B:246-462) Mitochondrial processing pep 4e-40
d1ppja2209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 2e-38
d3cx5a2218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 9e-36
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 6e-27
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 3e-25
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 5e-21
d3cx5b2150 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 9e-18
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 4e-17
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 5e-17
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 3e-16
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 5e-13
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 2e-12
d2fgea2196 d.185.1.1 (A:798-993) Presequence protease 1, PREP 6e-06
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  144 bits (364), Expect = 1e-41
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 8/212 (3%)

Query: 221 KSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPG 280
           K+ Y GG+ R Q    D L H  L  E         +A   +VLQ +LG G     G   
Sbjct: 1   KAKYHGGEIREQNG--DSLVHAALVAESAA--IGSAEANAFSVLQHVLGAGPHVKRGS-- 54

Query: 281 KGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVA 340
               S LY+ V     Q    SAF+  Y+ SG+FG    + +      I  A  ++ ++A
Sbjct: 55  -NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIA 113

Query: 341 TPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTA 400
             G +    +  AK   K+  LM++ES     +++G Q L  G   P    L+ ++ V  
Sbjct: 114 -QGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVAD 172

Query: 401 KDIASVAQKLLSSPLTMASYGDVINVPSYDAV 432
            D+ + A+K +S   +MA+ G++ + P  D +
Sbjct: 173 ADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 204
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 100.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.98
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.97
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.97
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.97
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.96
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.96
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.93
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.86
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.8
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 99.62
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 99.04
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 98.81
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 98.71
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.69
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.59
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 98.56
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.54
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.53
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.44
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 98.42
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.41
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 98.39
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.34
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.31
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 98.15
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 98.12
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 97.97
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 97.53
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 97.38
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 95.84
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 94.62
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 91.62
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 88.64
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) alpha chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-35  Score=257.49  Aligned_cols=204  Identities=30%  Similarity=0.493  Sum_probs=195.9

Q ss_pred             hheeeecCC-----CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecC
Q 013646           12 YQMVSKLPR-----KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR   86 (439)
Q Consensus        12 ~~~~~~l~n-----~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~   86 (439)
                      ++ +++|+|     ..+.+++.+.+++++++|+++|+.+..|++|+++||+++|+++++..++.+.++..|+.++++++.
T Consensus         6 ~~-~~~L~NGl~v~~~~~~~~~~~v~l~~~~G~~~e~~~~~G~a~ll~~ll~~gt~~~~~~~~~~~~~~~g~~~~~~~~~   84 (220)
T d1hr6a1           6 FK-LSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSR   84 (220)
T ss_dssp             CE-EEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEECS
T ss_pred             ce-EEEcCCCCEEEEEeCCCCEEEEEEEEcccccccCCCCchHHHHHHHHHhccccccchHHHHHHHHHhcchhhhcccc
Confidence            44 799999     677778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChh
Q 013646           87 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES  165 (439)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~  165 (439)
                      +++.|.+++++++++.+|+++.+++.+|.|++++|+++|..+.++++...++|...+.+.++..+| ++||++++.|+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~l~ll~~~l~~p~~~~~~~~~ek~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~g~~~  164 (220)
T d1hr6a1          85 ENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRG  164 (220)
T ss_dssp             SCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGG
T ss_pred             cceeeeccccccccchhhhhhhHhhhcccchhhhhhhhcchhhhhhhhhhccchhhhhhhhccccccccCCcccccccHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             hhccCCHHHHHHHHHhhCCCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCC
Q 013646          166 AINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHP  216 (439)
Q Consensus       166 ~l~~i~~~~l~~~~~~~~~~~~~~l~ivG~~~~~~~~~i~~~~~~~~~~~~  216 (439)
                      .|++++.++|++||+++|.|+||+++|+|+++++++++++++|++||....
T Consensus       165 ~i~~it~~dl~~f~~~~y~~~n~~l~i~G~~~~~~~~~i~~~fg~~~~~~~  215 (220)
T d1hr6a1         165 LIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHP  215 (220)
T ss_dssp             GGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHhhCCHHHHHHHHHHhCCcccEEEEEECCCHHHHHHHHHHHhcCCCCCCC
Confidence            999999999999999999999999999998889999999999999987653
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure