Citrus Sinensis ID: 013653

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVSHHHIL
ccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccHHHHHHHHHHccccccccccccccccHHHHHHHHEEHHHHccccccc
ccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccEEEEEEcccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHccEEEEEEEEEEEHHEEEEccccc
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLttngtsshvLMFSEDlffiyllppiifnagFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFkqmnigtlkigdyLAIGAIFAATDSVCTlqvlnqdetpllYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGmdaldiekwrvvrdspgksvgVSAILLGLVLLGRAafvfplsflsnltkksshekiglKQQLTIWWAGLMRGAVSMALAYKQftssghtklhgnAIMITSTITVVLFSTVVSHHHIL
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVSHHHIL
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVSHHHIL
**********************VVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVSH****
*******************HKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVSHHHIL
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVSHHHIL
**************MLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVSHH**L
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oooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooo
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ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHo
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MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVSHHHIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query439 2.2.26 [Sep-21-2011]
Q84WG1503 Sodium/hydrogen exchanger yes no 0.986 0.860 0.831 0.0
Q56XP4 546 Sodium/hydrogen exchanger no no 0.974 0.783 0.806 0.0
Q68KI4 538 Sodium/hydrogen exchanger no no 0.977 0.797 0.776 0.0
Q8S397529 Sodium/hydrogen exchanger no no 0.970 0.805 0.621 1e-152
Q8R4D1 576 Sodium/hydrogen exchanger yes no 0.892 0.680 0.334 7e-51
Q4L208 575 Sodium/hydrogen exchanger yes no 0.892 0.681 0.334 9e-51
Q5ZJ75 574 Sodium/hydrogen exchanger yes no 0.886 0.677 0.327 2e-50
Q9Y2E8 581 Sodium/hydrogen exchanger yes no 0.895 0.676 0.330 1e-49
Q552S0 674 Sodium/hydrogen exchanger yes no 0.822 0.535 0.330 2e-46
Q8RWU6 535 Sodium/hydrogen exchanger no no 0.861 0.706 0.331 2e-45
>sp|Q84WG1|NHX3_ARATH Sodium/hydrogen exchanger 3 OS=Arabidopsis thaliana GN=NHX3 PE=2 SV=2 Back     alignment and function desciption
 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/433 (83%), Positives = 398/433 (91%)

Query: 1   MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGL 60
           M I LS ++E++ ++ +SDH SVVSMNLFVALLCACIV+GHLLEE RWMNESITALIIG 
Sbjct: 1   MVIGLSTMLEKTEALFASDHASVVSMNLFVALLCACIVLGHLLEETRWMNESITALIIGS 60

Query: 61  CTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG 120
           CTGIVILL + G SS +L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGA+G
Sbjct: 61  CTGIVILLISGGKSSRILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIG 120

Query: 121 TLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLV 180
           TLISFVIIS GA H F++MNIG L I DYLAIGAIF+ATDSVCTLQVLNQDETPLLYSLV
Sbjct: 121 TLISFVIISFGAKHLFEKMNIGDLTIADYLAIGAIFSATDSVCTLQVLNQDETPLLYSLV 180

Query: 181 FGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFII 240
           FGEGVVNDATSVVLFNAIQ FDL++IN +IAL+F G+FFYLFI ST LGV AGLLSAF+I
Sbjct: 181 FGEGVVNDATSVVLFNAIQRFDLTNINSAIALEFAGNFFYLFILSTALGVAAGLLSAFVI 240

Query: 241 KKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRV 300
           KKLY+GRHSTDREVALM+L+AYLSYMLAELF+LS ILTVFFCGIVMSHYTWHNVT+ S+V
Sbjct: 241 KKLYIGRHSTDREVALMMLLAYLSYMLAELFHLSSILTVFFCGIVMSHYTWHNVTDKSKV 300

Query: 301 TTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFV 360
           TTKH FA +SF+AEIFIFLYVGMDALDIEKW VVR+SPG+S+GVS+ILLGL+LLGRAAFV
Sbjct: 301 TTKHTFAAMSFLAEIFIFLYVGMDALDIEKWDVVRNSPGQSIGVSSILLGLILLGRAAFV 360

Query: 361 FPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMI 420
           FPLSFLSNLTK S  EKI LK+Q+TIWWAGLMRGAVSMALAY QFT+SGHTK+ GNAIMI
Sbjct: 361 FPLSFLSNLTKSSPDEKIDLKKQVTIWWAGLMRGAVSMALAYNQFTTSGHTKVLGNAIMI 420

Query: 421 TSTITVVLFSTVV 433
           TSTITVVLFSTVV
Sbjct: 421 TSTITVVLFSTVV 433
May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q56XP4|NHX2_ARATH Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2 Back     alignment and function description
>sp|Q68KI4|NHX1_ARATH Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2 Back     alignment and function description
>sp|Q8S397|NHX4_ARATH Sodium/hydrogen exchanger 4 OS=Arabidopsis thaliana GN=NHX4 PE=2 SV=2 Back     alignment and function description
>sp|Q8R4D1|SL9A8_MOUSE Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc9a8 PE=2 SV=1 Back     alignment and function description
>sp|Q4L208|SL9A8_RAT Sodium/hydrogen exchanger 8 OS=Rattus norvegicus GN=Slc9a8 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJ75|SL9A8_CHICK Sodium/hydrogen exchanger 8 OS=Gallus gallus PE=2 SV=1 Back     alignment and function description
>sp|Q9Y2E8|SL9A8_HUMAN Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4 Back     alignment and function description
>sp|Q552S0|NHE1_DICDI Sodium/hydrogen exchanger 1 OS=Dictyostelium discoideum GN=nhe1 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWU6|NHX6_ARATH Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
225432394 541 PREDICTED: sodium/hydrogen exchanger 2 [ 0.984 0.798 0.864 0.0
224110480526 sodium proton exchanger [Populus trichoc 0.954 0.796 0.873 0.0
255317075536 Na+/H+ exchanger 4 [Populus euphratica] 0.977 0.800 0.850 0.0
297833384 554 hypothetical protein ARALYDRAFT_896752 [ 0.986 0.781 0.838 0.0
52546974 546 Na+/H+ antiporter [Iris lactea] 0.949 0.763 0.853 0.0
54645913 541 nhx1 antiporter [Vitis vinifera] 0.984 0.798 0.841 0.0
449454460 553 PREDICTED: sodium/hydrogen exchanger 2-l 0.981 0.779 0.826 0.0
356564575533 PREDICTED: sodium/hydrogen exchanger 2-l 0.984 0.810 0.821 0.0
255551633 541 sodium/hydrogen exchanger, putative [Ric 0.986 0.800 0.829 0.0
38373525 541 Na+/H+ antiporter [Medicago sativa] gi|1 0.984 0.798 0.827 0.0
>gi|225432394|ref|XP_002277061.1| PREDICTED: sodium/hydrogen exchanger 2 [Vitis vinifera] gi|147792256|emb|CAN61480.1| hypothetical protein VITISV_010931 [Vitis vinifera] gi|297736919|emb|CBI26120.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/434 (86%), Positives = 405/434 (93%), Gaps = 2/434 (0%)

Query: 1   MAIELSNLMERSLSMLS-SDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIG 59
           M  EL +++ + L M+S SDH SVVSMNLFVALLCACIV+GHLLEE RWMNESITAL +G
Sbjct: 1   MGFELGSVVMK-LGMVSTSDHSSVVSMNLFVALLCACIVVGHLLEEYRWMNESITALALG 59

Query: 60  LCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAV 119
           LCTGI+ILLTT G SSH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGA+
Sbjct: 60  LCTGIIILLTTRGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAI 119

Query: 120 GTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSL 179
           GTLISF IIS GA+HFFK+M IG+L IGDYLA+GAIF+ATDSVCTLQVLNQDETPLLYSL
Sbjct: 120 GTLISFGIISLGAIHFFKKMKIGSLDIGDYLALGAIFSATDSVCTLQVLNQDETPLLYSL 179

Query: 180 VFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFI 239
           VFGEGVVNDATSVVLFNAIQSFDLSHI+ SIAL+F+G+F YLFI STMLGV AGLLSA+I
Sbjct: 180 VFGEGVVNDATSVVLFNAIQSFDLSHIDSSIALQFIGNFLYLFITSTMLGVFAGLLSAYI 239

Query: 240 IKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSR 299
           IKKLY GRHSTDREVA+MILMAYLSYMLAELFYLS ILTVFFCGIVMSHYTWHNVTESSR
Sbjct: 240 IKKLYFGRHSTDREVAIMILMAYLSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSR 299

Query: 300 VTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAF 359
           VTTKHAFATLSFVAEIFIFLYVGMDALDIEKWR V DSPGKS+GVS+ILLGLVL+GRAAF
Sbjct: 300 VTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSDSPGKSIGVSSILLGLVLVGRAAF 359

Query: 360 VFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIM 419
           VFPLSFLSNLTKKSS EKI +KQQ+TIWWAGLMRGAVSMALAY QFT +GHT+L GNAIM
Sbjct: 360 VFPLSFLSNLTKKSSSEKIHIKQQVTIWWAGLMRGAVSMALAYNQFTRAGHTQLRGNAIM 419

Query: 420 ITSTITVVLFSTVV 433
           ITSTI+VVLFSTVV
Sbjct: 420 ITSTISVVLFSTVV 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224110480|ref|XP_002315532.1| sodium proton exchanger [Populus trichocarpa] gi|222864572|gb|EEF01703.1| sodium proton exchanger [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255317075|gb|ACU01855.1| Na+/H+ exchanger 4 [Populus euphratica] Back     alignment and taxonomy information
>gi|297833384|ref|XP_002884574.1| hypothetical protein ARALYDRAFT_896752 [Arabidopsis lyrata subsp. lyrata] gi|297330414|gb|EFH60833.1| hypothetical protein ARALYDRAFT_896752 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|52546974|gb|AAU81619.1| Na+/H+ antiporter [Iris lactea] Back     alignment and taxonomy information
>gi|54645913|gb|AAV36562.1| nhx1 antiporter [Vitis vinifera] Back     alignment and taxonomy information
>gi|449454460|ref|XP_004144972.1| PREDICTED: sodium/hydrogen exchanger 2-like [Cucumis sativus] gi|449473748|ref|XP_004153971.1| PREDICTED: sodium/hydrogen exchanger 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356564575|ref|XP_003550527.1| PREDICTED: sodium/hydrogen exchanger 2-like [Glycine max] Back     alignment and taxonomy information
>gi|255551633|ref|XP_002516862.1| sodium/hydrogen exchanger, putative [Ricinus communis] gi|223543950|gb|EEF45476.1| sodium/hydrogen exchanger, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|38373525|gb|AAR19085.1| Na+/H+ antiporter [Medicago sativa] gi|166156939|gb|ABY83098.1| Na+/H+ antiporter [Medicago sativa subsp. x varia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
TAIR|locus:2081111503 NHX4 "sodium hydrogen exchange 0.986 0.860 0.831 7.7e-190
TAIR|locus:2114810 546 NHX2 "sodium hydrogen exchange 0.974 0.783 0.806 6.6e-184
TAIR|locus:2181246 538 NHX1 "Na+/H+ exchanger 1" [Ara 0.977 0.797 0.776 2.7e-178
TAIR|locus:2173972529 NHX3 "AT5G55470" [Arabidopsis 0.970 0.805 0.621 8e-140
FB|FBgn0026787 649 Nhe1 "Na[+]/H[+] hydrogen exch 0.911 0.616 0.348 4.2e-56
MGI|MGI:1924281 576 Slc9a8 "solute carrier family 0.886 0.675 0.343 4.3e-54
RGD|1308193 575 Slc9a8 "solute carrier family 0.886 0.676 0.343 5.5e-54
UNIPROTKB|Q4L208 575 Slc9a8 "Sodium/hydrogen exchan 0.886 0.676 0.343 5.5e-54
UNIPROTKB|Q5ZJ75 574 Q5ZJ75 "Sodium/hydrogen exchan 0.886 0.677 0.341 8.9e-54
UNIPROTKB|F1MWW1 585 LOC617800 "Sodium/hydrogen exc 0.883 0.663 0.342 1.5e-53
TAIR|locus:2081111 NHX4 "sodium hydrogen exchanger 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1840 (652.8 bits), Expect = 7.7e-190, P = 7.7e-190
 Identities = 360/433 (83%), Positives = 398/433 (91%)

Query:     1 MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGL 60
             M I LS ++E++ ++ +SDH SVVSMNLFVALLCACIV+GHLLEE RWMNESITALIIG 
Sbjct:     1 MVIGLSTMLEKTEALFASDHASVVSMNLFVALLCACIVLGHLLEETRWMNESITALIIGS 60

Query:    61 CTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG 120
             CTGIVILL + G SS +L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGA+G
Sbjct:    61 CTGIVILLISGGKSSRILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIG 120

Query:   121 TLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLV 180
             TLISFVIIS GA H F++MNIG L I DYLAIGAIF+ATDSVCTLQVLNQDETPLLYSLV
Sbjct:   121 TLISFVIISFGAKHLFEKMNIGDLTIADYLAIGAIFSATDSVCTLQVLNQDETPLLYSLV 180

Query:   181 FGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFII 240
             FGEGVVNDATSVVLFNAIQ FDL++IN +IAL+F G+FFYLFI ST LGV AGLLSAF+I
Sbjct:   181 FGEGVVNDATSVVLFNAIQRFDLTNINSAIALEFAGNFFYLFILSTALGVAAGLLSAFVI 240

Query:   241 KKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRV 300
             KKLY+GRHSTDREVALM+L+AYLSYMLAELF+LS ILTVFFCGIVMSHYTWHNVT+ S+V
Sbjct:   241 KKLYIGRHSTDREVALMMLLAYLSYMLAELFHLSSILTVFFCGIVMSHYTWHNVTDKSKV 300

Query:   301 TTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFV 360
             TTKH FA +SF+AEIFIFLYVGMDALDIEKW VVR+SPG+S+GVS+ILLGL+LLGRAAFV
Sbjct:   301 TTKHTFAAMSFLAEIFIFLYVGMDALDIEKWDVVRNSPGQSIGVSSILLGLILLGRAAFV 360

Query:   361 FPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMI 420
             FPLSFLSNLTK S  EKI LK+Q+TIWWAGLMRGAVSMALAY QFT+SGHTK+ GNAIMI
Sbjct:   361 FPLSFLSNLTKSSPDEKIDLKKQVTIWWAGLMRGAVSMALAYNQFTTSGHTKVLGNAIMI 420

Query:   421 TSTITVVLFSTVV 433
             TSTITVVLFSTVV
Sbjct:   421 TSTITVVLFSTVV 433
GO:0006812 "cation transport" evidence=IEA
GO:0006814 "sodium ion transport" evidence=IEA;ISS;RCA
GO:0006885 "regulation of pH" evidence=IEA
GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS
GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA
GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IMP
GO:0010351 "lithium ion transport" evidence=RCA
TAIR|locus:2114810 NHX2 "sodium hydrogen exchanger 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181246 NHX1 "Na+/H+ exchanger 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173972 NHX3 "AT5G55470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0026787 Nhe1 "Na[+]/H[+] hydrogen exchanger 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1924281 Slc9a8 "solute carrier family 9 (sodium/hydrogen exchanger), member 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308193 Slc9a8 "solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4L208 Slc9a8 "Sodium/hydrogen exchanger 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ75 Q5ZJ75 "Sodium/hydrogen exchanger 8" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWW1 LOC617800 "Sodium/hydrogen exchanger" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84WG1NHX3_ARATHNo assigned EC number0.83140.98630.8608yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
TIGR00840 559 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 4e-54
COG0025429 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport 4e-36
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 3e-32
TIGR00831 525 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo 4e-19
COG3263 574 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip 1e-08
PRK05326 562 PRK05326, PRK05326, potassium/proton antiporter; R 5e-08
TIGR00932273 TIGR00932, 2a37, transporter, monovalent cation:pr 0.001
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 Back     alignment and domain information 
 Score =  188 bits (480), Expect = 4e-54
 Identities = 117/396 (29%), Positives = 190/396 (47%), Gaps = 34/396 (8%)

Query: 47  RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQF 106
           R + ES+  ++ GL  G +I  + +             FF+YLLPPI+ +AG+ + ++ F
Sbjct: 33  RAVPESVLLIVYGLLVGGIIKASPHIDP---PTLDSSYFFLYLLPPIVLDAGYFMPQRNF 89

Query: 107 FRNFMTIMLFGAVGTLISFVIISAG--AVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164
           F N  +I++F  VGTLI+  +I      +          + + D L  G++ +A D V  
Sbjct: 90  FENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAV 149

Query: 165 LQVLNQ-DETPLLYSLVFGEGVVNDATSVVLFNAIQSF---DLSHINLSIALKFVGSFFY 220
           L V  +      LY ++FGE ++NDA +VVL+N    F       + +    +   SFF 
Sbjct: 150 LAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFV 209

Query: 221 LFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVF 280
           +     ++GV+ G L AFI +      H    E   + L++YLSY+ AE  +LSGIL + 
Sbjct: 210 VTCGGLLVGVVFGFLVAFITRFT---HHIRQIEPLFVFLISYLSYLFAETLHLSGILALI 266

Query: 281 FCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD---IEKWRVVRDS 337
           FCGI M  Y   N++  S+ T K+    LS ++E  IF+++G+  +       W  V   
Sbjct: 267 FCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFV--- 323

Query: 338 PGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVS 397
                      L   ++ R   V  LS+++N  +     +I  K QL I++AGL RGAV+
Sbjct: 324 --------VATLSFCVIYRVLGVRTLSWITNEFRP---VEIPYKDQLVIFYAGL-RGAVA 371

Query: 398 MALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVV 433
            ALA                + +T+T+ VV F+ + 
Sbjct: 372 FALAL----LLDEKIFPYKFLFVTTTLVVVFFTVIF 403

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles.This model is specific for the eukaryotic members members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 559
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form Back     alignment and domain information
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed Back     alignment and domain information
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 439
KOG1965 575 consensus Sodium/hydrogen exchanger protein [Inorg 100.0
TIGR00840 559 b_cpa1 sodium/hydrogen exchanger 3. This model is 100.0
TIGR00831 525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 100.0
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 100.0
KOG1966 670 consensus Sodium/hydrogen exchanger protein [Inorg 100.0
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 100.0
PRK05326 562 potassium/proton antiporter; Reviewed 100.0
COG3263 574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 100.0
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 100.0
KOG4505467 consensus Na+/H+ antiporter [Inorganic ion transpo 100.0
PRK03562 621 glutathione-regulated potassium-efflux system prot 99.96
PLN03159 832 cation/H(+) antiporter 15; Provisional 99.96
COG0475397 KefB Kef-type K+ transport systems, membrane compo 99.96
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 99.96
PRK03659 601 glutathione-regulated potassium-efflux system prot 99.95
PRK10669 558 putative cation:proton antiport protein; Provision 99.95
COG4651408 RosB Kef-type K+ transport system, predicted NAD-b 99.71
KOG1650 769 consensus Predicted K+/H+-antiporter [Inorganic io 99.59
PRK14853423 nhaA pH-dependent sodium/proton antiporter; Provis 99.05
TIGR00773373 NhaA Na+/H+ antiporter NhaA. These proteins are me 98.56
PF06965378 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP 97.44
PRK09560389 nhaA pH-dependent sodium/proton antiporter; Review 97.31
PRK14854383 nhaA pH-dependent sodium/proton antiporter; Provis 97.24
PRK09561388 nhaA pH-dependent sodium/proton antiporter; Review 97.22
PRK14856438 nhaA pH-dependent sodium/proton antiporter; Provis 97.12
PRK14855423 nhaA pH-dependent sodium/proton antiporter; Provis 97.11
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 96.78
COG3004390 NhaA Na+/H+ antiporter [Inorganic ion transport an 96.67
COG0385319 Predicted Na+-dependent transporter [General funct 94.94
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 94.53
COG2855334 Predicted membrane protein [Function unknown] 94.0
PF06826169 Asp-Al_Ex: Predicted Permease Membrane Region; Int 93.86
COG2431297 Predicted membrane protein [Function unknown] 93.11
PRK03659601 glutathione-regulated potassium-efflux system prot 92.69
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 92.41
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 92.41
PRK03562621 glutathione-regulated potassium-efflux system prot 92.01
PF03956191 DUF340: Membrane protein of unknown function (DUF3 91.86
TIGR00841286 bass bile acid transporter. Functionally character 91.82
COG0798342 ACR3 Arsenite efflux pump ACR3 and related permeas 91.51
COG0475397 KefB Kef-type K+ transport systems, membrane compo 91.35
TIGR00808254 malonate_madM malonate transporter, MadM subunit. 91.09
PRK04972558 putative transporter; Provisional 90.8
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 90.54
PRK10669558 putative cation:proton antiport protein; Provision 90.36
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 90.1
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 89.78
TIGR03802 562 Asp_Ala_antiprt aspartate-alanine antiporter. All 89.76
TIGR00832328 acr3 arsenical-resistance protein. The first prote 88.83
PLN03159 832 cation/H(+) antiporter 15; Provisional 88.64
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 87.77
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 87.71
PF05982327 DUF897: Domain of unknown function (DUF897) ; Inte 87.68
PRK03818 552 putative transporter; Validated 87.45
PRK04972 558 putative transporter; Provisional 86.5
TIGR00210398 gltS sodium--glutamate symport carrier (gltS). 85.97
TIGR03802562 Asp_Ala_antiprt aspartate-alanine antiporter. All 84.59
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 83.0
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.7e-58  Score=457.48  Aligned_cols=423  Identities=50%  Similarity=0.793  Sum_probs=376.0

Q ss_pred             ccchhHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhcc--ccchhHHHHHHHHHHHHHHHhhcCCCCc---ccc
Q 013653            4 ELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENR--WMNESITALIIGLCTGIVILLTTNGTSS---HVL   78 (439)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~--~iP~~~~~il~Gil~G~~~~~~~~~~~~---~~~   78 (439)
                      |++.-.|..++-.++||++.++++.++++++.+++.+|+++++|  ++|+.+..+++|+++|.+.++.+.+.++   ...
T Consensus        15 ~~~~~~~~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~   94 (575)
T KOG1965|consen   15 EIATDISSDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRIL   94 (575)
T ss_pred             hhccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeE
Confidence            34455566656668899999999999999999999999999755  8999999999999999999988887776   667


Q ss_pred             ccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhccc
Q 013653           79 MFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAA  158 (439)
Q Consensus        79 ~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~  158 (439)
                      .++|+.++.+.+|+++|++|++++.+.++||..++...+++|+.+++..++...|++.......+++|.+|+.+|+++||
T Consensus        95 ~f~~~~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSA  174 (575)
T KOG1965|consen   95 VFSPDLFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISA  174 (575)
T ss_pred             EecccHHHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcc
Confidence            89999999999999999999999999999999999999999999999999999888844333348999999999999999


Q ss_pred             ccHHHHHHHhcccCC-CcchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653          159 TDSVCTLQVLNQDET-PLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSA  237 (439)
Q Consensus       159 Tdp~~v~~il~~~~~-~~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~  237 (439)
                      |||+++++++||.+. |+++.+++|||++||++++++++.+.....++.+.....+.+..++..++++..+|+..|.+.+
T Consensus       175 TDPVtvLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA  254 (575)
T KOG1965|consen  175 TDPVTVLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISA  254 (575)
T ss_pred             cCchHHHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999997 5899999999999999999999999998777655555557899999999999999999999999


Q ss_pred             HHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHH
Q 013653          238 FIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFI  317 (439)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  317 (439)
                      +++|+.+.+ +.+..|..+.+.++|.+|++||.+|+||+++++.||++++++.++|.++++|...+|+|+.+++++|+++
T Consensus       255 ~~lK~~~l~-~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfI  333 (575)
T KOG1965|consen  255 LVLKFLYLR-RTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFI  333 (575)
T ss_pred             HHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999765 7789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcchhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccC-CCCCChhhhhhhhccCCCccHH
Q 013653          318 FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSS-HEKIGLKQQLTIWWAGLMRGAV  396 (439)
Q Consensus       318 Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~glpRG~v  396 (439)
                      |.|+|+...+.++|.+.      ...+.....++++++|++-+++++.+.|..||.+ .++++.|++..++|+|..||++
T Consensus       334 F~Y~Gl~~f~~~k~~~~------~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAv  407 (575)
T KOG1965|consen  334 FIYLGLSAFDFQKHVYK------SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAV  407 (575)
T ss_pred             HHHHhHHHhcccceeee------chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHH
Confidence            99999998888877653      2345566678899999999999999999988755 5669999999999999449999


Q ss_pred             HHHhhhccccccCCcCCchhhHHHHHhhhhhhhccccccc
Q 013653          397 SMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVSHH  436 (439)
Q Consensus       397 ~l~lA~~~~~~~~~~~~~~~~~i~~~~~~vVl~s~~v~g~  436 (439)
                      ++|+|.....+   .+...++++.+++..+|++|+++.|-
T Consensus       408 s~ALa~~~~~~---~~~~~~q~i~tttl~vVlfT~lv~Gg  444 (575)
T KOG1965|consen  408 SFALALGDFTD---SPHTGGQTIFTTTLVVVLFTVLVFGG  444 (575)
T ss_pred             HHHHHhhhccc---cccccccEEEEeeeeeeeeeeeeeCC
Confidence            99999864221   11125688999999999999999884

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>TIGR00773 NhaA Na+/H+ antiporter NhaA Back     alignment and domain information
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH Back     alignment and domain information
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters Back     alignment and domain information
>COG2431 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00808 malonate_madM malonate transporter, MadM subunit Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
2k3c_A33 TMIX peptide; membrane peptide, dodecylphosphochol 3e-04
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic} Length = 33 Back     alignment and structure
 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 13/26 (50%), Positives = 21/26 (80%)

Query: 261 AYLSYMLAELFYLSGILTVFFCGIVM 286
           +Y++Y+ AELF+LSGI+ +   G+VM
Sbjct: 3   SYMAYLSAELFHLSGIMALIASGVVM 28

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
1zcd_A388 Na(+)/H(+) antiporter 1; membrane protein; 3.45A { 99.48
2l0e_A33 Sodium/hydrogen exchanger 1; transmembrane helix, 98.0
2htg_A28 NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; 97.28
2k3c_A33 TMIX peptide; membrane peptide, dodecylphosphochol 96.75
2kbv_A28 Sodium/hydrogen exchanger 1; transmembrane, peptid 95.91
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 94.2
1y4e_A27 Sodium/hydrogen exchanger 1; NHE1 isoform, transme 90.83
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Back     alignment and structure
Probab=99.48  E-value=3.6e-13  Score=132.86  Aligned_cols=277  Identities=13%  Similarity=0.122  Sum_probs=183.5

Q ss_pred             hHHHHHhhHHHhhhhhhcCChHHH----HHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhc
Q 013653           83 DLFFIYLLPPIIFNAGFQVKKKQF----FRNFM--TIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF  156 (439)
Q Consensus        83 ~~~~~i~L~~ilF~~g~~~~~~~l----~~~~~--~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGail  156 (439)
                      +++-+..+.+.+|..|+|+|.+.+    |+..+  .....+..|+++++.+     |+.+      +.+.+.+.--+++.
T Consensus        61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~------~~~~~~~~~gw~ip  129 (388)
T 1zcd_A           61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF------NYADPITREGWAIP  129 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG------CCSSTTHHHHTSSS
T ss_pred             HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH------hcCChhhhhhhHHH
Confidence            467788899999999999999877    55444  3566777787776544     4444      55666677889999


Q ss_pred             ccccHHHHHHHhcccC--CC-cchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653          157 AATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG  233 (439)
Q Consensus       157 s~Tdp~~v~~il~~~~--~~-~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G  233 (439)
                      ++||.+..+.++...+  .| ..+..+.+.+.+||..++++..++.+   ++.+.   .....         .+ ..   
T Consensus       130 ~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~~---~~l~~---------~~-~~---  190 (388)
T 1zcd_A          130 AATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLSM---ASLGV---------AA-VA---  190 (388)
T ss_dssp             SCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCCH---HHHHH---------HH-HH---
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccH---HHHHH---------HH-HH---
Confidence            9999999999998776  45 57799999999999999999888743   22222   11110         01 11   


Q ss_pred             HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHH-HHH
Q 013653          234 LLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATL-SFV  312 (439)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  312 (439)
                      ....+.++|.    +.+.......+  ....++.+|..|.++.+|.+++|+++.+..+++.  ...++.++-.+.+ .++
T Consensus       191 ~~~~~~l~r~----~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~--~~~~~le~~l~p~v~~~  262 (388)
T 1zcd_A          191 IAVLAVLNLC----GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGR--SPAKRLEHVLHPWVAYL  262 (388)
T ss_dssp             HHHHHHHHHT----TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSS--CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHh----cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCC--CHHHHHHHHHHHHHHHH
Confidence            1112333333    22222222222  3366777899999999999999999996433221  2234455555554 468


Q ss_pred             HHHHH-HHHhhcchhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh-ccCCCCCChhhhhhhhc-c
Q 013653          313 AEIFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTK-KSSHEKIGLKQQLTIWW-A  389 (439)
Q Consensus       313 ~~~l~-Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~  389 (439)
                      +.|+| |...|..++... .+..    ....  ...+.+..+++|+++++..+++..+.+ -+.+++.+|||..-+++ +
T Consensus       263 ilPlFaFanaGv~l~~~~-~~~l----~~~~--~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~  335 (388)
T 1zcd_A          263 ILPLFAFANAGVSLQGVT-LDGL----TSIL--PLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILC  335 (388)
T ss_dssp             HHHHHHHHHCCCCCSSSC-CCTH----HHHS--STTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHT
T ss_pred             HHHHHHHHhcCeeecccc-hhhc----cChH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHh
Confidence            89999 999999984321 0000    0001  112234558999999888777754333 24466899999988777 6


Q ss_pred             CCCccHHHHHhhhccc
Q 013653          390 GLMRGAVSMALAYKQF  405 (439)
Q Consensus       390 glpRG~v~l~lA~~~~  405 (439)
                      | .|+.+++..+...+
T Consensus       336 g-igftmsL~Ia~laf  350 (388)
T 1zcd_A          336 G-IGFTMSIFIASLAF  350 (388)
T ss_dssp             T-CCHHHHHHHHHHHS
T ss_pred             c-cchHHHHHHHHHhc
Confidence            7 49999999987765
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens} Back     alignment and structure
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic} Back     alignment and structure
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic} Back     alignment and structure
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic} Back     alignment and structure
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00