Citrus Sinensis ID: 013655

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MGIKSDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHcccccccccccccHHHHccHcccccHccccccccccccccccHHHccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mgiksddekqtytVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPavqslwhlspnqeslITSVVFAGMLVGAYswgivsdnfgrrKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGlglgggpvlASWFlefipapnrgFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYsvtpesprylclkgrtAEARHVLEKIAKingtklpsgnlvsdWEHElqnksllssssneddttpkemardedSISEakemksedststlansnmGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTElnngqnkcvsnelqsgksrdinygdvfitsfaeFPGLLLAAAMVDRLGRKLSMSSMFfccciflvpllfqqpkglttgllFGARICITVTFTVVYVYapevshrs
Flexible Loop (DISEMBL)
mgiksddekqtyTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIakingtklpsGNLVSDWEHELqnksllssssneddttpkemardedsiseakemksedststlansNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS
Low Complexity Region (SEG)
MGIKSDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYlllffrclvglglgggpvlASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWllglsafpsslllllysVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKsllssssNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS
Disordered region (IsUnstruct)
***********YTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLP**NLV*****************************************************MGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNEL***KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAP******
Disordered Region (DISOPRED)
***********YTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWE***********************ARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHR*
Disordered Region (DISEMBL)
*********QTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSL************************************LANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS
Disordered Region (DISPRO)
**********TYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNL******************************************************MGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIKSDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	439	2.2.26 [Sep-21-2011]
Q940M4	500	Organic cation/carnitine	yes	no	0.945	0.83	0.639	1e-140
P30638	520	Putative transporter ZK63	yes	no	0.876	0.740	0.346	5e-72
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	no	0.861	0.689	0.376	1e-69
Q1JP63	548	Synaptic vesicle 2-relate	yes	no	0.856	0.686	0.370	1e-67
Q5R5T8	548	Synaptic vesicle 2-relate	yes	no	0.856	0.686	0.370	2e-67
Q8N4V2	548	Synaptic vesicle 2-relate	yes	no	0.856	0.686	0.370	2e-67
Q8BFT9	548	Synaptic vesicle 2-relate	yes	no	0.861	0.689	0.362	3e-63
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	no	0.856	0.686	0.365	4e-63
Q8N434	492	Putative transporter SVOP	no	no	0.856	0.764	0.287	1e-48
Q6PDF3	494	Putative transporter SVOP	no	no	0.861	0.765	0.275	4e-47

>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1

 Score =  499 bits (1286), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/430 (63%), Positives = 324/430 (75%), Gaps = 15/430 (3%)

Query: 7   DEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQE 66
           D    +TVDEA+V MGFGKFQ+ VLAYAGMGW++EAMEMMLLSFVGPAVQSLW+LS  QE
Sbjct: 3   DGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQE 62

Query: 67  SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126
           SLITSVVFAGML+GAYSWGIVSD  GRRKGF+ITA+VT  AG LSAF+PNY  L+  RCL
Sbjct: 63  SLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCL 122

Query: 127 VGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186
           VGLGLGGGPVLASW+LEFIPAP+RG WMV+F  FWTVGTI EA +AWLVMPRLGWRWLL 
Sbjct: 123 VGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLA 182

Query: 187 LSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSG-NLVSDWEHE 245
            S+ PSSLLLL Y  T ESPRYL L+GR AEA  +LEKIA++N T+LP G          
Sbjct: 183 FSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELETEL 242

Query: 246 LQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSP 305
            +NK++ +     ++T   +     ++++ +K +   D              +LL LLSP
Sbjct: 243 EENKNIPT-----ENTHLLKAGESGEAVAVSKIVLKADKEPGF---------SLLALLSP 288

Query: 306 ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSF 365
            L+K TLLLW+VFFGNAF+YYG+VLLTTELNN  N+C   E Q   S D+NY DVFI SF
Sbjct: 289 TLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVNYRDVFIASF 348

Query: 366 AEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTF 425
           AEFPGLL++AAMVDRLGRK SM+SM F CCIFL+PLL  Q   +TT LLFG RICI+  F
Sbjct: 349 AEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAF 408

Query: 426 TVVYVYAPEV 435
           TVVY+YAPE+
Sbjct: 409 TVVYIYAPEI 418

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score =  271 bits (694), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 152/439 (34%), Positives = 233/439 (53%), Gaps = 54/439 (12%)

Query: 4   KSDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSP 63
           +S D ++T+TVDEA+  +GFG+FQL +    GM W+++AMEMMLLS + PA+   W +S 
Sbjct: 59  RSPDSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISS 118

Query: 64  NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFF 123
            Q++L+T+ VF+GM++ +  WG + D FGRRKG   + +V    G++S  +P++Y+LLFF
Sbjct: 119 VQQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFF 178

Query: 124 RCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 183
           R L G G+GG P   + + EF+P   R   +V+ ++FW +G + EA +A+ VM   GWR 
Sbjct: 179 RGLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRA 238

Query: 184 LLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWE 243
           L+ LS+ P  +  +     PES R+    G    A   L+  A++N  +LP+G LVS  +
Sbjct: 239 LMFLSSLPLGIFAVASFWLPESARFDMASGHPERALETLQAAARMNRVQLPTGRLVSSTK 298

Query: 244 HELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILL 303
                                                  +S   +AN           LL
Sbjct: 299 ------------------------------------AGSESRGDIAN-----------LL 311

Query: 304 SPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDI-------N 356
           SP+L K+T+LLW ++   AFSYYG+VL TT L    ++C      +G   ++       +
Sbjct: 312 SPDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLTRSD 371

Query: 357 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFG 416
           Y D+  T+ AEFPGL++   +++  GRK +M+  +    IF   L F   +   T L+F 
Sbjct: 372 YFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFV 431

Query: 417 ARICITVTFTVVYVYAPEV 435
           AR  I+  F   YVY PEV
Sbjct: 432 ARAFISGAFQCAYVYTPEV 450

Caenorhabditis elegans (taxid: 6239)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score =  264 bits (674), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 166/441 (37%), Positives = 232/441 (52%), Gaps = 63/441 (14%)

Query: 5   SDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPN 64
           +DD   T+ V++A+  +GFGKFQ  +    G+ W+++AMEMM+LS + P +   W L   
Sbjct: 64  TDD---TFMVEDAVEAIGFGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSW 120

Query: 65  QESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFR 124
           Q +L+TSVVF GM+  +  WG VSD +GRR G  I+ I T   G+LSAFAP Y  +L  R
Sbjct: 121 QVALLTSVVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILVLR 180

Query: 125 CLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184
            LVG G+GG P   + + EF+P  +R   +++ + FW +GT+ E  +A  VMP LGWRWL
Sbjct: 181 GLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWRWL 240

Query: 185 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH 244
           L LSA P  L  +L    PES RY  L G   +A   L++IA  NG  +P G L+     
Sbjct: 241 LILSALPLMLFAILCFWLPESARYEVLSGNQEKALATLKRIATENGAPMPLGKLI----- 295

Query: 245 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS 304
                                ++R ED        K  D                  L S
Sbjct: 296 ---------------------VSRQED------RGKIRD------------------LFS 310

Query: 305 PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSRDI-------- 355
           P+   +TLLLW ++F NAFSYYGLVLLTTEL    + C +SN+ ++ K +          
Sbjct: 311 PQFRCTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTV 370

Query: 356 -NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLL 414
            +Y D+  T+ +EFPGLL+   ++DR+GRK +M+  F       + L     + + T  L
Sbjct: 371 EDYTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTVFL 430

Query: 415 FGARICITVTFTVVYVYAPEV 435
           F AR  I+  F   YVY PEV
Sbjct: 431 FIARAFISGGFQAAYVYTPEV 451

Xenopus laevis (taxid: 8355)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score =  257 bits (657), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 164/443 (37%), Positives = 234/443 (52%), Gaps = 67/443 (15%)

Query: 5   SDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPN 64
           +DD   T+ V++A+  +GFGKFQ  +    G+ W+++AMEMM+LS + P +   W L   
Sbjct: 64  TDD---TFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSW 120

Query: 65  QESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFR 124
           Q +L+TSVVF GM+  +  WG +SD +GR+ G  I+ + T   G+LSAFAP Y  +L  R
Sbjct: 121 QVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLR 180

Query: 125 CLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184
            LVG G+GG P   + + EF+P   R   +++ + FW +GT+ E  +A  VMP LGWRWL
Sbjct: 181 GLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWL 240

Query: 185 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH 244
           L LSA P  L  +L    PES RY  L G   +A   L++IA  NG  +P G L+     
Sbjct: 241 LILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI----- 295

Query: 245 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS 304
                                ++R ED        K  D                  L +
Sbjct: 296 ---------------------ISRQED------RGKMRD------------------LFT 310

Query: 305 PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR---------D 354
           P    +TLLLW ++F NAFSYYGLVLLTTEL    + C +S+  ++ +++         +
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSE 370

Query: 355 INYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF--FCCCIFLVPLLFQQPKGLTTG 412
            +Y D+  T+ +EFPG+L+   ++DRLGRK +M+  F  F  C  L  L     + + T 
Sbjct: 371 EDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLL--LFICVGRNMLTL 428

Query: 413 LLFGARICITVTFTVVYVYAPEV 435
           LLF AR  I+  F   YVY PEV
Sbjct: 429 LLFIARAFISGGFQAAYVYTPEV 451

Bos taurus (taxid: 9913)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score =  256 bits (655), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 164/443 (37%), Positives = 234/443 (52%), Gaps = 67/443 (15%)

Query: 5   SDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPN 64
           +DD   T+ V++A+  +GFGKFQ  +    G+ W+++AMEMM+LS + P +   W L   
Sbjct: 64  TDD---TFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSW 120

Query: 65  QESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFR 124
           Q +L+TSVVF GM+  +  WG +SD +GR+ G  I+ + T   G+LSAFAP Y  +L  R
Sbjct: 121 QVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLR 180

Query: 125 CLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184
            LVG G+GG P   + + EF+P   R   +++ + FW +GT+ E  +A  VMP LGWRWL
Sbjct: 181 GLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWL 240

Query: 185 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH 244
           L LSA P  L  +L    PES RY  L G   +A   L++IA  NG  +P G L+     
Sbjct: 241 LILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI----- 295

Query: 245 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS 304
                                ++R ED        K  D                  L +
Sbjct: 296 ---------------------ISRQED------RGKMRD------------------LFT 310

Query: 305 PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR---------D 354
           P    +TLLLW ++F NAFSYYGLVLLTTEL    + C +S+  ++ +++         +
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSE 370

Query: 355 INYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF--FCCCIFLVPLLFQQPKGLTTG 412
            +Y D+  T+ +EFPG+L+   ++DRLGRK +M+  F  F  C  L  L     + + T 
Sbjct: 371 EDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLL--LFICVGRNVLTL 428

Query: 413 LLFGARICITVTFTVVYVYAPEV 435
           LLF AR  I+  F   YVY PEV
Sbjct: 429 LLFIARAFISGGFQAAYVYTPEV 451

Pongo abelii (taxid: 9601)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score =  256 bits (655), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 164/443 (37%), Positives = 234/443 (52%), Gaps = 67/443 (15%)

Query: 5   SDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPN 64
           +DD   T+ V++A+  +GFGKFQ  +    G+ W+++AMEMM+LS + P +   W L   
Sbjct: 64  TDD---TFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSW 120

Query: 65  QESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFR 124
           Q +L+TSVVF GM+  +  WG +SD +GR+ G  I+ + T   G+LSAFAP Y  +L  R
Sbjct: 121 QVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLR 180

Query: 125 CLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184
            LVG G+GG P   + + EF+P   R   +++ + FW +GT+ E  +A  VMP LGWRWL
Sbjct: 181 GLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWL 240

Query: 185 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH 244
           L LSA P  L  +L    PES RY  L G   +A   L++IA  NG  +P G L+     
Sbjct: 241 LILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI----- 295

Query: 245 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS 304
                                ++R ED        K  D                  L +
Sbjct: 296 ---------------------ISRQED------RGKMRD------------------LFT 310

Query: 305 PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR---------D 354
           P    +TLLLW ++F NAFSYYGLVLLTTEL    + C +S+  ++ +++         +
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSE 370

Query: 355 INYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF--FCCCIFLVPLLFQQPKGLTTG 412
            +Y D+  T+ +EFPG+L+   ++DRLGRK +M+  F  F  C  L  L     + + T 
Sbjct: 371 EDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLL--LFICVGRNVLTL 428

Query: 413 LLFGARICITVTFTVVYVYAPEV 435
           LLF AR  I+  F   YVY PEV
Sbjct: 429 LLFIARAFISGGFQAAYVYTPEV 451

Homo sapiens (taxid: 9606)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score =  243 bits (619), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 160/441 (36%), Positives = 232/441 (52%), Gaps = 63/441 (14%)

Query: 5   SDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPN 64
           +DD   T+ V++A+  +GFG+FQ  +    G+ W+++AMEMM+LS + P +   W L   
Sbjct: 64  TDD---TFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSW 120

Query: 65  QESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFR 124
           Q +L+TSVVF GM+  +  WG +SD +GR+ G  I+ + T   G+LSAFAP Y  +L  R
Sbjct: 121 QVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLR 180

Query: 125 CLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184
            LVG G+GG P   + + EF+P   R   +++ + FW +GT+ E  +A  VMP LGWRWL
Sbjct: 181 GLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWL 240

Query: 185 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH 244
           L LSA P  L  +L    PES RY  L G   +A   L++IA  NG  +P G L+     
Sbjct: 241 LLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI----- 295

Query: 245 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS 304
                                ++R ED        K  D                  L +
Sbjct: 296 ---------------------ISRQED------RGKMRD------------------LFT 310

Query: 305 PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR---------D 354
           P    +TLLLW ++F NAFSYYGLVLLTTEL    + C +S+  ++ +++          
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSK 370

Query: 355 INYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLL 414
            +Y D+  T+ +EFPG+L+   ++DRLGRK +M+  F    +  + L     + + T LL
Sbjct: 371 EDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTLLL 430

Query: 415 FGARICITVTFTVVYVYAPEV 435
           F AR  I+  F   YVY PEV
Sbjct: 431 FIARAFISGGFQAAYVYTPEV 451

Mus musculus (taxid: 10090)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score =  242 bits (618), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 232/443 (52%), Gaps = 67/443 (15%)

Query: 5   SDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPN 64
           +DD   T+ V++A+  +GFG+FQ  +    G+ W+++AMEMM+LS + P +   W L   
Sbjct: 64  TDD---TFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSW 120

Query: 65  QESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFR 124
           Q +L+TSVVF GM+  +  WG +SD +GR+ G  I+   T   G+LSAFAP Y  +L  R
Sbjct: 121 QVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLR 180

Query: 125 CLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184
            LVG G+GG P   + + EF+P   R   +++ + FW +GT+ E  +A  VMP LGWRWL
Sbjct: 181 GLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWL 240

Query: 185 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH 244
           L LSA P  +  +L    PES RY  L G   +A   L++IA  NG  +P G L+     
Sbjct: 241 LLLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI----- 295

Query: 245 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS 304
                                ++R ED        K  D                  L +
Sbjct: 296 ---------------------ISRQED------RGKMRD------------------LFT 310

Query: 305 PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR---------D 354
           P    +TLLLW ++F NAFSYYGLVLLTTEL    + C +S+  ++ +++          
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSK 370

Query: 355 INYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF--FCCCIFLVPLLFQQPKGLTTG 412
            +Y D+  T+ +EFPG+L+   ++DRLGRK +M+  F  F  C  L  L     + + T 
Sbjct: 371 EDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLL--LFICIGRNVLTL 428

Query: 413 LLFGARICITVTFTVVYVYAPEV 435
           LLF AR  I+  F   YVY PEV
Sbjct: 429 LLFIARAFISGGFQAAYVYTPEV 451

Rattus norvegicus (taxid: 10116)

>sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 222/449 (49%), Gaps = 73/449 (16%)

Query: 7   DEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQE 66
            E +T+TV++A+ T+GFG+F + +    G   + EAME+ML++ V P ++  W L   Q 
Sbjct: 27  KEPKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQV 86

Query: 67  SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126
           +L+T++VF G +V +  +G+++D +GR K  LI+ +  +   LL++FAP+Y   +F R +
Sbjct: 87  ALVTTMVFFGYMVFSILFGLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTM 146

Query: 127 VGLGLGG---GPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 183
           VG G+ G   G ++ +   EF+P   RG+ + + Q FW  G++L  G+A +++P +GWRW
Sbjct: 147 VGCGVSGHSQGLIIKT---EFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRW 203

Query: 184 LLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWE 243
           L+ +++ P  +L++ +   PES R+    G T  A   LE++AK+N + +P G LV   E
Sbjct: 204 LIRVASIPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKLV---E 260

Query: 244 HELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILL 303
             L+ +                  R  D                              LL
Sbjct: 261 PVLEKR-----------------GRFAD------------------------------LL 273

Query: 304 SPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL--------NNGQNKCVSNELQSGKSRDI 355
             + +++TL +W+++ G +F+YYG++L + EL        +   +  V     SG+S+  
Sbjct: 274 DAKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSDSAVVVTGGDSGESQSP 333

Query: 356 NYGDVF---------ITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP 406
            Y  +F         I++  E     L    ++ LGR+LS+S    C  +F + L     
Sbjct: 334 CYCHMFAPSDYRTMIISTIGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTS 393

Query: 407 KGLTTGLLFGARICITVTFTVVYVYAPEV 435
                G LF  R  +   F  VY+Y  EV
Sbjct: 394 SAGLIGFLFMLRALVAANFNTVYIYTAEV 422

Homo sapiens (taxid: 9606)

>sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 219/453 (48%), Gaps = 75/453 (16%)

Query: 5   SDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPN 64
              E +T+TV++A+ T+GFG+F + +    G   + EAME+ML++ V P ++  W L   
Sbjct: 25  QQKETKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENW 84

Query: 65  QESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFR 124
           Q + +T++VF G +V +  +G+++D +GR K  L++ +  +   LL++F+P+Y   +F R
Sbjct: 85  QVAFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFLR 144

Query: 125 CLVGLGLGG---GPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW 181
            +VG G+ G   G ++ +   EF+P   RG+ + + Q FW  G++L   +A +V+P +GW
Sbjct: 145 TMVGCGVSGHAQGLIIKT---EFLPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGW 201

Query: 182 RWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSD 241
           RWL+ +++ P  +L++ +   PES R+    G T  A + LE IAK+N + +P G LV  
Sbjct: 202 RWLIRIASIPGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAKMNRSVMPEGQLV-- 259

Query: 242 WEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLI 301
            E  L+ +                  R  D                              
Sbjct: 260 -EPILEKR-----------------GRFAD------------------------------ 271

Query: 302 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL----------NNGQNKCVSNELQSGK 351
           LL  + +++TL +W+++ G +F+YYG++L + EL          +  + + V     SG+
Sbjct: 272 LLDSKYLRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPEVVETTGDSGE 331

Query: 352 SRDINYGDVF---------ITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL 402
                Y  +F         I++  E     L    ++ LGR+LS+S    C  +F + L 
Sbjct: 332 GLSPCYCHIFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLN 391

Query: 403 FQQPKGLTTGLLFGARICITVTFTVVYVYAPEV 435
                    G LF  R  +   F  +Y+Y  EV
Sbjct: 392 ICTSSAGLIGFLFMLRALVAANFNTIYIYTAEV 424

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
225443470	495	PREDICTED: synaptic vesicle 2-related pr	0.938	0.832	0.731	1e-160
356523480	558	PREDICTED: synaptic vesicle 2-related pr	0.927	0.729	0.662	1e-158
357467655	499	Synaptic vesicle 2-related protein [Medi	0.947	0.833	0.663	1e-153
147767934	461	hypothetical protein VITISV_042940 [Viti	0.861	0.819	0.699	1e-149
224095100	463	predicted protein [Populus trichocarpa]	0.876	0.831	0.613	1e-149
242039569	491	hypothetical protein SORBIDRAFT_01g02099	0.940	0.841	0.591	1e-146
90265074	489	H0702G05.6 [Oryza sativa Indica Group]	0.936	0.840	0.589	1e-145
297829842	500	hypothetical protein ARALYDRAFT_318077 [	0.945	0.83	0.662	1e-143
255544462	504	sugar transporter, putative [Ricinus com	0.945	0.823	0.629	1e-143
413934140	500	hypothetical protein ZEAMMB73_097319 [Ze	0.940	0.826	0.575	1e-143

>gi|225443470|ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera] gi|297735684|emb|CBI18371.3| unnamed protein product [Vitis vinifera]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 314/429 (73%), Positives = 355/429 (82%), Gaps = 17/429 (3%)

Query: 7   DEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQE 66
           DE   YTVD+A+V MGFG FQ+ VLAYAGMGWISEAMEMMLLSFVGPAVQS W LS ++E
Sbjct: 3   DESPNYTVDDALVAMGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWGLSSHEE 62

Query: 67  SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126
           SLITSVVFAGMLVGAYSWGIVSDN GRRKGFLITA+VTSAAG LSAFAPNY  L+  RCL
Sbjct: 63  SLITSVVFAGMLVGAYSWGIVSDNHGRRKGFLITAVVTSAAGFLSAFAPNYISLIILRCL 122

Query: 127 VGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186
           VGLGLGGGPVL+SWFLEFIPAPNRG WMVIF  FWTVGTILEA +AW VMP LGWRWLL 
Sbjct: 123 VGLGLGGGPVLSSWFLEFIPAPNRGTWMVIFSGFWTVGTILEASLAWCVMPTLGWRWLLA 182

Query: 187 LSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHEL 246
           LSA PS LLL+ Y VTPESPRYLCLKGRT EA  VLEKIA++N  +LP G LVSD  H++
Sbjct: 183 LSALPSLLLLIFYRVTPESPRYLCLKGRTTEALSVLEKIARMNRAELPPGILVSD--HQV 240

Query: 247 QNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPE 306
                 +S+ +ED    K ++ + DS S  K++          +SNMGGI++L +LLSP+
Sbjct: 241 GVPE--NSNPSEDM---KLLSPEADSGSSHKDI----------DSNMGGISSLFMLLSPK 285

Query: 307 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFA 366
           L++STLLLW+VFFGNAFSYYGLVLLT+ELNN QNKC   ELQS K++DINY DVFITSFA
Sbjct: 286 LLRSTLLLWMVFFGNAFSYYGLVLLTSELNNEQNKCGVAELQSEKTQDINYKDVFITSFA 345

Query: 367 EFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFT 426
           EFPGLLL+AA VD LGRKLSMS+MFF CCIFL+PL+F QP+GLTT LLFGARICITVTFT
Sbjct: 346 EFPGLLLSAATVDILGRKLSMSAMFFLCCIFLLPLVFHQPQGLTTALLFGARICITVTFT 405

Query: 427 VVYVYAPEV 435
           VVY+YAPE+
Sbjct: 406 VVYIYAPEI 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523480|ref|XP_003530366.1| PREDICTED: synaptic vesicle 2-related protein-like [Glycine max]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/439 (66%), Positives = 347/439 (79%), Gaps = 32/439 (7%)

Query: 4   KSDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSP 63
           ++  E  TYTVD+A+V +GFG FQ+ VLAYAG+GW+SEAMEMMLLSFVGPAVQ+ W+LS 
Sbjct: 72  RTGAEGPTYTVDDALVALGFGNFQILVLAYAGVGWVSEAMEMMLLSFVGPAVQTAWNLSA 131

Query: 64  NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFF 123
           ++ESLITSVVFAGML+GAYSWGIVSD  GRRKGFLITA VT+ AG LSAFAPNY  L+  
Sbjct: 132 HEESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFLITATVTALAGFLSAFAPNYIFLIVL 191

Query: 124 RCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 183
           R LVG+GLGGGPVL+SWFLEF+PAPNRG WMV+F  FWT+GTI EA +AW+VMP+LGWRW
Sbjct: 192 RSLVGIGLGGGPVLSSWFLEFVPAPNRGTWMVVFSAFWTLGTIFEASLAWIVMPKLGWRW 251

Query: 184 LLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWE 243
           LL LS+ P+S LLL Y VTPESPRYLCLKGRTA+A +VLEKIA++NG +LPSG LVS+ E
Sbjct: 252 LLALSSLPTSFLLLFYKVTPESPRYLCLKGRTADAINVLEKIARVNGRELPSGILVSEHE 311

Query: 244 HEL-------QNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGI 296
            EL       ++  LLS  +NED+  PK +                        SN+G I
Sbjct: 312 IELHKIDNPTEDARLLSPRTNEDE-HPKGIV-----------------------SNLGAI 347

Query: 297 TALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN 356
           ++LL+LLSP+L +STLLLW VFFGNAFSYYGLVLLTTEL NG +KC+S++LQ+ KS+D+ 
Sbjct: 348 SSLLVLLSPKLARSTLLLWAVFFGNAFSYYGLVLLTTEL-NGHSKCMSDKLQTEKSQDVR 406

Query: 357 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFG 416
           Y  VFI SFAE PGLLL+AA VD+LGRKLSMS MFF CCIFL+PLLF  P+GLTT  LF 
Sbjct: 407 YKSVFIASFAELPGLLLSAAAVDKLGRKLSMSIMFFMCCIFLLPLLFYLPEGLTTSFLFL 466

Query: 417 ARICITVTFTVVYVYAPEV 435
           ARICIT TFT+VY+YAPE+
Sbjct: 467 ARICITATFTIVYIYAPEM 485

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467655|ref|XP_003604112.1| Synaptic vesicle 2-related protein [Medicago truncatula] gi|355505167|gb|AES86309.1| Synaptic vesicle 2-related protein [Medicago truncatula]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/434 (66%), Positives = 342/434 (78%), Gaps = 18/434 (4%)

Query: 2   GIKSDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHL 61
           G + +    +YTVDEA++T+GFGKFQ+ VL YAG+GWISEAMEMMLLSFVGPAVQS W+L
Sbjct: 4   GEEVEGSSSSYTVDEALITLGFGKFQILVLIYAGIGWISEAMEMMLLSFVGPAVQSAWNL 63

Query: 62  SPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLL 121
           S +QES ITSVVFAGML+GAYSWGIVSD  GRRKGFLITA VT+ AG  S+ +PNY  LL
Sbjct: 64  SSHQESFITSVVFAGMLIGAYSWGIVSDQHGRRKGFLITATVTATAGFFSSLSPNYVSLL 123

Query: 122 FFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW 181
            FR LVGLGLGGGPVL+SWFLEF+PAPNRG WMV+F  FWTVGTI EA +AW+VMPRLGW
Sbjct: 124 VFRSLVGLGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGW 183

Query: 182 RWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSD 241
           RWLL LS+ P+S LLL Y +TPESPRYLCLKGRT EA  VLE I+++NG KLPSG LVSD
Sbjct: 184 RWLLALSSLPTSFLLLFYKMTPESPRYLCLKGRTTEAIDVLETISRLNGKKLPSGVLVSD 243

Query: 242 WEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLI 301
            + ELQ           D+ +       ED++  +   KSE  +     SN+GGI++L +
Sbjct: 244 NQIELQKI---------DNPS-------EDTVLLSPR-KSEVESPKGMISNLGGISSLRV 286

Query: 302 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVF 361
           LLSP+L +STLLLW VFFGNAFSYYGLVLLT+EL    +KC+ ++LQ+ KS+D++Y  VF
Sbjct: 287 LLSPKLSRSTLLLWAVFFGNAFSYYGLVLLTSELKR-NSKCIPDKLQTEKSQDVSYKGVF 345

Query: 362 ITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICI 421
           I SFAE PGLLL+A  VD+LGRKLSMS MFF CCIFL+PL F  P+ LTTGLLFGARICI
Sbjct: 346 IASFAELPGLLLSAVAVDKLGRKLSMSIMFFMCCIFLLPLTFYLPEDLTTGLLFGARICI 405

Query: 422 TVTFTVVYVYAPEV 435
           TVTFT+VY+YAPE+
Sbjct: 406 TVTFTIVYIYAPEI 419

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767934|emb|CAN64534.1| hypothetical protein VITISV_042940 [Vitis vinifera]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 300/429 (69%), Positives = 333/429 (77%), Gaps = 51/429 (11%)

Query: 7   DEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQE 66
           DE   YTVD+A+V MGFG FQ+ VLAYAGMGWISEAMEMMLLSFVGPAVQS W LS ++E
Sbjct: 3   DESPNYTVDDALVAMGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWGLSSHEE 62

Query: 67  SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126
           SLITSVVFAGMLVGAYSWGIVSDN GRRKGFLITA+VTSAAG LSAFAPNY  L+  RCL
Sbjct: 63  SLITSVVFAGMLVGAYSWGIVSDNHGRRKGFLITAVVTSAAGFLSAFAPNYISLIILRCL 122

Query: 127 VGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186
           VGLGLGGGPVL+SWFLEFIPAPNRG WMVIF  FWTVGTILEA +AW VMP LGWRWLL 
Sbjct: 123 VGLGLGGGPVLSSWFLEFIPAPNRGTWMVIFSGFWTVGTILEASLAWCVMPTLGWRWLLA 182

Query: 187 LSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHEL 246
           LSA PS LLL+ Y VTPESPRYLCLKGRT EA                           L
Sbjct: 183 LSALPSLLLLIFYRVTPESPRYLCLKGRTTEA---------------------------L 215

Query: 247 QNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPE 306
           ++  LLS               + DS S  K++          +SNMGGI++L +LLSP+
Sbjct: 216 KDMKLLSP--------------EADSGSSHKDI----------DSNMGGISSLFMLLSPK 251

Query: 307 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFA 366
           L++STLLLW+VFFGNAFSYYGLVLLT+ELNNGQNKC   ELQS K++DINY DVFITSFA
Sbjct: 252 LLRSTLLLWMVFFGNAFSYYGLVLLTSELNNGQNKCGVAELQSEKTQDINYKDVFITSFA 311

Query: 367 EFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFT 426
           EFPGLLL+AA VD LGRKLSMS+MFF CCIFL+PL+F QP+GLTT LLFGARICITVTFT
Sbjct: 312 EFPGLLLSAATVDILGRKLSMSAMFFLCCIFLLPLVFHQPQGLTTALLFGARICITVTFT 371

Query: 427 VVYVYAPEV 435
           VVY+YAPE+
Sbjct: 372 VVYIYAPEI 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095100|ref|XP_002310345.1| predicted protein [Populus trichocarpa] gi|222853248|gb|EEE90795.1| predicted protein [Populus trichocarpa]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/429 (61%), Positives = 315/429 (73%), Gaps = 44/429 (10%)

Query: 7   DEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQE 66
           D    YTVDEA+VT+GFGKFQ  VL YAGMGW+SEAME+M+LSFVGPAV S W L+ ++E
Sbjct: 3   DGGPRYTVDEALVTVGFGKFQFLVLLYAGMGWVSEAMEVMILSFVGPAVHSKWGLTSHEE 62

Query: 67  SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126
           SLIT+VVFAGMLVGAY+WG++SD +GRRKGF +TAI+TS AG LSAFAPNY  LL  RCL
Sbjct: 63  SLITTVVFAGMLVGAYTWGVISDKYGRRKGFFVTAIMTSVAGFLSAFAPNYIALLISRCL 122

Query: 127 VGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186
           VG G+GGGPVL +WFLEF+PAPNRG WMV+F  FWTVGTI E G+AW++MPRLGWRWLL 
Sbjct: 123 VGFGIGGGPVLLAWFLEFVPAPNRGTWMVVFSAFWTVGTIFEGGLAWIIMPRLGWRWLLA 182

Query: 187 LSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHEL 246
           LSA PS LLL+ Y++TPESPRYLCLKGR  EA  +L+KIAK+NG +LP G +V+  E EL
Sbjct: 183 LSALPSFLLLVFYTLTPESPRYLCLKGRKNEALIILKKIAKLNGKELPPGVVVAGNEIEL 242

Query: 247 QNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPE 306
           Q  + L                                              +LI+ SP 
Sbjct: 243 QGNNHLPE--------------------------------------------MLIIFSPR 258

Query: 307 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFA 366
           L++STLLLW+V F NAFSYYGLVLLTTELN+  N C   + QS K  +INY  VFITSFA
Sbjct: 259 LVRSTLLLWVVIFANAFSYYGLVLLTTELNDRSNTCHQTKKQSQKPANINYKQVFITSFA 318

Query: 367 EFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFT 426
           EFPGL+L+A ++DRLGRKLSM++MFF CCIFL+PL+  Q  G+TT LLFGAR CIT TFT
Sbjct: 319 EFPGLILSALVIDRLGRKLSMAAMFFVCCIFLLPLVVHQSTGVTTTLLFGARTCITGTFT 378

Query: 427 VVYVYAPEV 435
           +VY+YAPE+
Sbjct: 379 IVYIYAPEL 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039569|ref|XP_002467179.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] gi|241921033|gb|EER94177.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/431 (59%), Positives = 328/431 (76%), Gaps = 18/431 (4%)

Query: 6   DDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQ 65
           + +  +YTVD+A+++ GFG+FQ+ +L+YAG+G I+EAMEMMLLSFVGP+VQ  W L+ +Q
Sbjct: 3   EGQSASYTVDDALLSSGFGRFQILILSYAGIGLIAEAMEMMLLSFVGPSVQLEWKLTSHQ 62

Query: 66  ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRC 125
           ES+ITSVVF GML+GAYSWG+VSDN+GRR+GFL TAIVTS AG LSAFAPNY  L+  R 
Sbjct: 63  ESMITSVVFVGMLIGAYSWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYLSLISLRF 122

Query: 126 LVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLL 185
           LVG+GLGGGPVL SWFLEF+PAP RG WMV+F  FWTVGTILEA +AW VMP+ GWRWLL
Sbjct: 123 LVGIGLGGGPVLGSWFLEFVPAPTRGTWMVVFSAFWTVGTILEASLAWTVMPKFGWRWLL 182

Query: 186 GLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHE 245
            LSA PS LLLL Y++TPESPR+LC+KGRT EA  VLEK+A++N  +LPSG LVSD    
Sbjct: 183 ALSAIPSFLLLLFYAITPESPRFLCMKGRTTEAVDVLEKMARLNNVQLPSGRLVSD---- 238

Query: 246 LQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSP 305
            +N  L   S + + TT    A + D++SE +             S+ GGI ++  LL+P
Sbjct: 239 -KNIELDEVSGSSESTTLLSGAEESDNLSEDR------------GSDFGGIKSVGKLLAP 285

Query: 306 ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN-YGDVFITS 364
           +LI++TLLLW+ FFGNAF+YYG+VLLT+EL+NG   C   +++S  S + + Y +VFI+S
Sbjct: 286 KLIRATLLLWMAFFGNAFAYYGIVLLTSELSNGNRICAKQDVESVNSTNASLYKNVFISS 345

Query: 365 FAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVT 424
           FAE PG  L+A +VDR GRKLSM+SM F  C+FLVPL+F +   LT   LFGAR+CI+ +
Sbjct: 346 FAEIPGSFLSAMIVDRFGRKLSMASMLFTSCVFLVPLVFSRTDILTRISLFGARLCISAS 405

Query: 425 FTVVYVYAPEV 435
           FT+VY+YAPE+
Sbjct: 406 FTIVYIYAPEI 416

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 254/431 (58%), Positives = 325/431 (75%), Gaps = 20/431 (4%)

Query: 6   DDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQ 65
           +D+  TY+VD+A+++ GFG++Q+ +L+YAG+G I+EAMEMMLLSFVGP+VQ  W L+ +Q
Sbjct: 3   EDQSATYSVDDALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQ 62

Query: 66  ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRC 125
           ES+ITS+VF GML+GAY+WG+VSDN+GRR+GFL TAIVTS AG LSAFAPNY  L+  R 
Sbjct: 63  ESMITSIVFVGMLIGAYTWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYVSLISLRF 122

Query: 126 LVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLL 185
           LVG+GLGGGPVLASWFLEF+PAP RG WMV+F  FWTVGTI EA +AW VMP+ GWRWLL
Sbjct: 123 LVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFWTVGTIFEASLAWTVMPKFGWRWLL 182

Query: 186 GLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHE 245
            LSA PS +LLL Y +TPESPR+LC+KGR  EA  VLEK+A++N  +LPSG LVSD   E
Sbjct: 183 ALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDVLEKMARLNNVQLPSGRLVSDKNIE 242

Query: 246 LQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSP 305
           L         S  + TT    A ++D+I E K             S+ GG++ +  LLSP
Sbjct: 243 LDEL------STSESTTLLADAEEDDTIIEDKV------------SSFGGLS-VAKLLSP 283

Query: 306 ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN-YGDVFITS 364
           +LI++TLLLW+ FFGNAFSYYG+VLLT+EL+NG   C   E++S  S D + Y +VFI+S
Sbjct: 284 KLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKNVFISS 343

Query: 365 FAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVT 424
           FAE PG  L+A +VDR+GRKLSM+SM F  C+FL PL+F +   LT   LFGAR+CI+ +
Sbjct: 344 FAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARLCISAS 403

Query: 425 FTVVYVYAPEV 435
           FT+VY+YAPE+
Sbjct: 404 FTIVYIYAPEI 414

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829842|ref|XP_002882803.1| hypothetical protein ARALYDRAFT_318077 [Arabidopsis lyrata subsp. lyrata] gi|297328643|gb|EFH59062.1| hypothetical protein ARALYDRAFT_318077 [Arabidopsis lyrata subsp. lyrata]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/430 (66%), Positives = 334/430 (77%), Gaps = 15/430 (3%)

Query: 7   DEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQE 66
           D K  +TVD+A+V MGFGKFQL VLAYAGMGW++EAMEMMLLSFVGPAVQSLW+LS  +E
Sbjct: 3   DGKSRFTVDKALVAMGFGKFQLYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSAREE 62

Query: 67  SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126
           SLITSVVFAGML+GAYSWGIVSD  GRRKGF+ITA+VT  AG LSAF+PNY  L+  RCL
Sbjct: 63  SLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFIAGFLSAFSPNYMWLIILRCL 122

Query: 127 VGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186
           VGLGLGGGPVLASW+LEFIPAP+RG WMV+F  FWTVGTI EA +AW+VMP LGWRWLL 
Sbjct: 123 VGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWVVMPSLGWRWLLA 182

Query: 187 LSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHEL 246
           LS+ PSSLLLL Y  T ESPRYL L+GR AEA  +LEKIA++NGT+LP G L S+ E EL
Sbjct: 183 LSSVPSSLLLLFYRWTSESPRYLILQGRKAEALSILEKIARMNGTQLPPGVLSSELETEL 242

Query: 247 Q-NKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSP 305
           + NK+L   + N     P E+    ++++ +K +   D              +LL LLSP
Sbjct: 243 EDNKNL--PTENTHLLKPGEIG---EAVAVSKIVLKADKEPAF---------SLLALLSP 288

Query: 306 ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSF 365
            LIK TLLLW+VFFGNAF+YYG+VLLTTELNN  N+C   E Q G S D+NY DVFI SF
Sbjct: 289 TLIKRTLLLWIVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLGNSNDVNYKDVFIASF 348

Query: 366 AEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTF 425
           AEFPGLL++AAMVDRLGRK+SM+SM F CCIFL+PLL  Q   +TT LLFG RICI+  F
Sbjct: 349 AEFPGLLISAAMVDRLGRKVSMASMLFTCCIFLLPLLSHQSPFITTALLFGGRICISAAF 408

Query: 426 TVVYVYAPEV 435
           TVVY+YAPE+
Sbjct: 409 TVVYIYAPEI 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544462|ref|XP_002513292.1| sugar transporter, putative [Ricinus communis] gi|223547200|gb|EEF48695.1| sugar transporter, putative [Ricinus communis]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/429 (62%), Positives = 325/429 (75%), Gaps = 14/429 (3%)

Query: 7   DEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQE 66
           D +  YTVDEA+  +GFGKFQ+ VL YAG+GW SEAMEMMLLS +GPAVQ  W LS  ++
Sbjct: 3   DGRLVYTVDEALFAVGFGKFQVLVLLYAGLGWASEAMEMMLLSTIGPAVQQQWGLSSAKQ 62

Query: 67  SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126
           SLITS+VF GM++GAYSWG+VSD FGRR+GFL+TAI+TSAAGLLS+FAPNY  L+ FRCL
Sbjct: 63  SLITSMVFVGMMIGAYSWGLVSDKFGRRRGFLVTAIITSAAGLLSSFAPNYITLILFRCL 122

Query: 127 VGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186
           VGLGLGGGPVL +WFLEF+PAP RG WMVIFQ FWT+G I EA +AW++MPRL WRWLL 
Sbjct: 123 VGLGLGGGPVLLAWFLEFVPAPKRGTWMVIFQVFWTIGAISEAALAWIIMPRLSWRWLLA 182

Query: 187 LSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHEL 246
           ++A PS LLL+ Y++TPESPRYLCLKGR  +A  +LEK+AK+NG  LP G LV+D E EL
Sbjct: 183 VAALPSFLLLVFYTMTPESPRYLCLKGRKVDALGILEKVAKLNGKVLPPGVLVTDHELEL 242

Query: 247 QNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPE 306
           Q KSL      ED  T   + ++++ ++    M  +        SNMG   +LL LLSP 
Sbjct: 243 QEKSL----PVEDGNT--GLPQNDEDVNHPPPMWKD--------SNMGPFRSLLTLLSPR 288

Query: 307 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFA 366
           L +STLLLW+VFFGNAFSYYGLVLLTTELN+    C   ++Q   + D+NY DVFITSFA
Sbjct: 289 LARSTLLLWVVFFGNAFSYYGLVLLTTELNDRNRHCPLTQMQPQTAVDVNYKDVFITSFA 348

Query: 367 EFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFT 426
           E PG++LA   VDR GRKLSMS +FF C IFL+PL+  Q   LTT LLF ARI IT TFT
Sbjct: 349 EIPGIILAGLTVDRFGRKLSMSVVFFICGIFLLPLVVHQSATLTTALLFIARIFITDTFT 408

Query: 427 VVYVYAPEV 435
           VVYVYAPE+
Sbjct: 409 VVYVYAPEM 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413934140|gb|AFW68691.1| hypothetical protein ZEAMMB73_097319 [Zea mays]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/431 (57%), Positives = 326/431 (75%), Gaps = 18/431 (4%)

Query: 6   DDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQ 65
           + +  +YTVD+A+++ GFG+FQ+ +L+YAG+G I+EAMEMMLLSFVGP+VQ  W L+ +Q
Sbjct: 12  EGQSASYTVDDALLSSGFGRFQILILSYAGIGLIAEAMEMMLLSFVGPSVQLEWKLTSHQ 71

Query: 66  ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRC 125
           ES+ITSVVF GML+GAYSWG+VSDN+GRR+GFL TAI+TS AG  SAFAPNY  L+  R 
Sbjct: 72  ESMITSVVFVGMLIGAYSWGVVSDNYGRRRGFLFTAIMTSGAGFFSAFAPNYLSLISLRF 131

Query: 126 LVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLL 185
           LVG+GLGGGPVL SWFLEF+PAP RG WMV+F  FWTVGTILEA +AW +MP+ GWRWLL
Sbjct: 132 LVGIGLGGGPVLGSWFLEFVPAPTRGTWMVVFSAFWTVGTILEASLAWTIMPKFGWRWLL 191

Query: 186 GLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHE 245
            LSA PS LLLL Y++TPESPR+LC+KGRT EA  +LEK+A++N  +LPSG LVSD    
Sbjct: 192 ALSAVPSFLLLLFYAITPESPRFLCMKGRTTEAVDILEKMARLNNVQLPSGRLVSD---- 247

Query: 246 LQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSP 305
            +N  L   S + + TT    A + D+++E +             S+ GGI ++  LL+P
Sbjct: 248 -KNIELDEVSGSSESTTLLAGAEESDNLNEDQ------------GSDFGGIKSVGKLLAP 294

Query: 306 ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN-YGDVFITS 364
           +LI++TLLLW+ FFGNAF+YYG+VLLT+EL+NG   C   +++S  S + + Y +VFI+S
Sbjct: 295 KLIRATLLLWMAFFGNAFAYYGIVLLTSELSNGNRICAKEDVESVHSTNASLYKNVFISS 354

Query: 365 FAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVT 424
           FAE PG  L+A +VDR GRK SM+SM F  C+FL+PL+F +   LT   LFGAR+CI+ +
Sbjct: 355 FAEIPGSFLSAMIVDRFGRKRSMASMLFTSCVFLLPLVFSRTDILTRISLFGARLCISAS 414

Query: 425 FTVVYVYAPEV 435
           FT+VY+YAPE+
Sbjct: 415 FTIVYIYAPEI 425

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
TAIR|locus:2089270	500	NiaP "nicotinate transporter"	0.947	0.832	0.596	4.2e-127
WB|WBGene00014021	520	svop-1 [Caenorhabditis elegans	0.539	0.455	0.341	8.8e-63
UNIPROTKB|F1NIB3	554	SVOP "Uncharacterized protein"	0.528	0.418	0.349	2.6e-59
UNIPROTKB|E2QZ16	548	SVOP "Uncharacterized protein"	0.521	0.417	0.353	3.3e-59
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.521	0.474	0.353	3.3e-59
UNIPROTKB|G3MZU5	547	SVOP "Synaptic vesicle 2-relat	0.521	0.418	0.353	5.4e-59
UNIPROTKB|Q1JP63	548	SVOP "Synaptic vesicle 2-relat	0.521	0.417	0.353	5.4e-59
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.521	0.417	0.353	6.9e-59
UNIPROTKB|F1RGB1	548	SVOP "Uncharacterized protein"	0.521	0.417	0.353	1.4e-58
ZFIN|ZDB-GENE-060526-336	549	svopa "SV2 related protein hom	0.521	0.417	0.340	1.4e-58

TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)]

 Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
 Identities = 256/429 (59%), Positives = 297/429 (69%)

Query:     7 DEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQE 66
             D    +TVDEA+V MGFGKFQ+ VLAYAGMGW++EAMEMMLLSFVGPAVQSLW+LS  QE
Sbjct:     3 DGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQE 62

Query:    67 SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYXXXXXXXX 126
             SLITSVVFAGML+GAYSWGIVSD  GRRKGF+ITA+VT  AG LSAF+PNY         
Sbjct:    63 SLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCL 122

Query:   127 XXXXXXXXXXXASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWXXX 186
                        ASW+LEFIPAP+RG WMV+F  FWTVGTI EA +AWLVMPRLGWRW   
Sbjct:   123 VGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLA 182

Query:   187 XXXXXXXXXXXXXXVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHEL 246
                            T ESPRYL L+GR AEA  +LEKIA++N T+LP G L S+ E EL
Sbjct:   183 FSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELETEL 242

Query:   247 QNKXXXXXXXNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPE 306
             +          E+   P E      +  E+ E  +       A+   G   +LL LLSP 
Sbjct:   243 E----------ENKNIPTENTHLLKA-GESGEAVAVSKIVLKADKEPG--FSLLALLSPT 289

Query:   307 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFA 366
             L+K TLLLW+VFFGNAF+YYG+VLLTTELNN  N+C   E Q   S D+NY DVFI SFA
Sbjct:   290 LMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVNYRDVFIASFA 349

Query:   367 EFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFT 426
             EFPGLL++AAMVDRLGRK SM+SM F CCIFL+PLL  Q   +TT LLFG RICI+  FT
Sbjct:   350 EFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFT 409

Query:   427 VVYVYAPEV 435
             VVY+YAPE+
Sbjct:   410 VVYIYAPEI 418

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0090416 "nicotinate transporter activity" evidence=IDA

GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA

GO:2001142 "nicotinate transport" evidence=IDA

GO:2001143 "N-methylnicotinate transport" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

WB|WBGene00014021 svop-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 424 (154.3 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
 Identities = 81/237 (34%), Positives = 128/237 (54%)

Query:     4 KSDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSP 63
             +S D ++T+TVDEA+  +GFG+FQL +    GM W+++AMEMMLLS + PA+   W +S 
Sbjct:    59 RSPDSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISS 118

Query:    64 NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYXXXXX 123
              Q++L+T+ VF+GM++ +  WG + D FGRRKG   + +V    G++S  +P++Y     
Sbjct:   119 VQQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFF 178

Query:   124 XXXXXXXXXXXXXXASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 183
                            + + EF+P   R   +V+ ++FW +G + EA +A+ VM   GWR 
Sbjct:   179 RGLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRA 238

Query:   184 XXXXXXXXXXXXXXXXXVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVS 240
                                PES R+    G    A   L+  A++N  +LP+G LVS
Sbjct:   239 LMFLSSLPLGIFAVASFWLPESARFDMASGHPERALETLQAAARMNRVQLPTGRLVS 295

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1NIB3 SVOP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 394 (143.8 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
 Identities = 81/232 (34%), Positives = 121/232 (52%)

Query:     8 EKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQES 67
             ++ T+ V++A+  +GFGKFQ  +    G+ W+++AMEMM+LS + P +   W L   Q +
Sbjct:    70 KEDTFMVEDAVEAIGFGKFQWKLSVITGLAWMADAMEMMILSILAPQLHCEWRLPSWQVA 129

Query:    68 LITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYXXXXXXXXX 127
             L+TSVVF GM+  +  WG +SD +GR+ G  I+ + T   G+LS FAP Y          
Sbjct:   130 LLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSGFAPIYSWILVLRGLV 189

Query:   128 XXXXXXXXXXASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWXXXX 187
                        + + EF+P   R   +++ + FW +GT+ E  +A LVMP LGWRW    
Sbjct:   190 GFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVLVMPTLGWRWLLIL 249

Query:   188 XXXXXXXXXXXXXVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 239
                            PES RY  L G   +A   L++IA  NG  +P G L+
Sbjct:   250 SALPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 301

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 392 (143.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 81/229 (35%), Positives = 119/229 (51%)

Query:    11 TYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLIT 70
             T+ V++A+  +GFGKFQ  +    G+ W+++AMEMM+LS + P +   W L   Q +L+T
Sbjct:    67 TFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLT 126

Query:    71 SVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYXXXXXXXXXXXX 130
             SVVF GM+  +  WG +SD +GR+ G  I+ + T   G+LSAFAP Y             
Sbjct:   127 SVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFG 186

Query:   131 XXXXXXXASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWXXXXXXX 190
                     + + EF+P   R   +++ + FW +GT+ E  +A  VMP LGWRW       
Sbjct:   187 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLILSAV 246

Query:   191 XXXXXXXXXXVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 239
                         PES RY  L G   +A   L++IA  NG  +P G L+
Sbjct:   247 PLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 392 (143.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 81/229 (35%), Positives = 119/229 (51%)

Query:    11 TYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLIT 70
             T+ V++A+  +GFGKFQ  +    G+ W+++AMEMM+LS + P +   W L   Q +L+T
Sbjct:     2 TFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLT 61

Query:    71 SVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYXXXXXXXXXXXX 130
             SVVF GM+  +  WG +SD +GR+ G  I+ + T   G+LSAFAP Y             
Sbjct:    62 SVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFG 121

Query:   131 XXXXXXXASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWXXXXXXX 190
                     + + EF+P   R   +++ + FW +GT+ E  +A  VMP LGWRW       
Sbjct:   122 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLILSAV 181

Query:   191 XXXXXXXXXXVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 239
                         PES RY  L G   +A   L++IA  NG  +P G L+
Sbjct:   182 PLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 230

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 393 (143.4 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
 Identities = 81/229 (35%), Positives = 119/229 (51%)

Query:    11 TYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLIT 70
             T+ V++A+  +GFGKFQ  +    G+ W+++AMEMM+LS + P +   W L   Q +L+T
Sbjct:    66 TFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLT 125

Query:    71 SVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYXXXXXXXXXXXX 130
             SVVF GM+  +  WG +SD +GR+ G  I+ + T   G+LSAFAP Y             
Sbjct:   126 SVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFG 185

Query:   131 XXXXXXXASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWXXXXXXX 190
                     + + EF+P   R   +++ + FW +GT+ E  +A  VMP LGWRW       
Sbjct:   186 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAV 245

Query:   191 XXXXXXXXXXVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 239
                         PES RY  L G   +A   L++IA  NG  +P G L+
Sbjct:   246 PLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 294

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 393 (143.4 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
 Identities = 81/229 (35%), Positives = 119/229 (51%)

Query:    11 TYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLIT 70
             T+ V++A+  +GFGKFQ  +    G+ W+++AMEMM+LS + P +   W L   Q +L+T
Sbjct:    67 TFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLT 126

Query:    71 SVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYXXXXXXXXXXXX 130
             SVVF GM+  +  WG +SD +GR+ G  I+ + T   G+LSAFAP Y             
Sbjct:   127 SVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFG 186

Query:   131 XXXXXXXASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWXXXXXXX 190
                     + + EF+P   R   +++ + FW +GT+ E  +A  VMP LGWRW       
Sbjct:   187 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAV 246

Query:   191 XXXXXXXXXXVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 239
                         PES RY  L G   +A   L++IA  NG  +P G L+
Sbjct:   247 PLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 393 (143.4 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 81/229 (35%), Positives = 119/229 (51%)

Query:    11 TYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLIT 70
             T+ V++A+  +GFGKFQ  +    G+ W+++AMEMM+LS + P +   W L   Q +L+T
Sbjct:    67 TFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLT 126

Query:    71 SVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYXXXXXXXXXXXX 130
             SVVF GM+  +  WG +SD +GR+ G  I+ + T   G+LSAFAP Y             
Sbjct:   127 SVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFG 186

Query:   131 XXXXXXXASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWXXXXXXX 190
                     + + EF+P   R   +++ + FW +GT+ E  +A  VMP LGWRW       
Sbjct:   187 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAV 246

Query:   191 XXXXXXXXXXVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 239
                         PES RY  L G   +A   L++IA  NG  +P G L+
Sbjct:   247 PLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 392 (143.0 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
 Identities = 81/229 (35%), Positives = 119/229 (51%)

Query:    11 TYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLIT 70
             T+ V++A+  +GFGKFQ  +    G+ W+++AMEMM+LS + P +   W L   Q +L+T
Sbjct:    67 TFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLT 126

Query:    71 SVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYXXXXXXXXXXXX 130
             SVVF GM+  +  WG +SD +GR+ G  I+ + T   G+LSAFAP Y             
Sbjct:   127 SVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFG 186

Query:   131 XXXXXXXASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWXXXXXXX 190
                     + + EF+P   R   +++ + FW +GT+ E  +A  VMP LGWRW       
Sbjct:   187 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLLLSAV 246

Query:   191 XXXXXXXXXXVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 239
                         PES RY  L G   +A   L++IA  NG  +P G L+
Sbjct:   247 PLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-060526-336 svopa "SV2 related protein homolog a (rat)" [Danio rerio (taxid:7955)]

 Score = 384 (140.2 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
 Identities = 78/229 (34%), Positives = 121/229 (52%)

Query:    11 TYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLIT 70
             T+ V++A+  +GFG FQ  +    G+ W+++AMEMM+LS + P +   W L   + +L+T
Sbjct:    67 TFMVEDAVEAIGFGTFQWKLSILTGLSWMADAMEMMILSILAPQLHCEWALPSWEVALLT 126

Query:    71 SVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYXXXXXXXXXXXX 130
             SVVF GM++ +  WG +SD +GR+ G  ++ + T   G+LSAFAP Y             
Sbjct:   127 SVVFIGMMISSSLWGNISDKYGRKTGLKMSVLWTLFYGILSAFAPIYGWILFLRALVGFG 186

Query:   131 XXXXXXXASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWXXXXXXX 190
                     + + EF+P  +R   +++ + FW +GT+ E  +A LVMP LGWRW       
Sbjct:   187 IGGAPQSVTLYAEFLPMRSRATCILLIEIFWALGTVFEVLLAILVMPTLGWRWLLALSTI 246

Query:   191 XXXXXXXXXXVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 239
                         PES RY  L G   +A + L++IA  N   +P G L+
Sbjct:   247 PLFIFAFLCFWLPESARYDVLTGNQEKALNTLKRIAAENNVPMPLGKLI 295

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940M4	OCT7_ARATH	No assigned EC number	0.6395	0.9453	0.83	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	439
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	3e-72
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	8e-35
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-33
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-28
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-25
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-24
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	2e-20
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-18
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	9e-15
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	6e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-09
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-09
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	3e-09
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-08
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	9e-08
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	4e-07
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	4e-06
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	9e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-05
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	1e-05
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-04
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	3e-04
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	4e-04
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	0.002
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	0.003
COG2211	467	COG2211, MelB, Na+/melibiose symporter and related	0.003

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  235 bits (602), Expect = 3e-72
 Identities = 128/433 (29%), Positives = 200/433 (46%), Gaps = 72/433 (16%)

Query: 11  TYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFV--GPAVQSLWHLSPN---Q 65
            + VD+       G   L +    G+      ++    S+      + + W L      +
Sbjct: 70  RFMVDQWANPSLLGCEPLKLSD-LGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWK 128

Query: 66  ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRC 125
             L  S  F G+L+G++ +G +SD FGR+K  L++ +VT+ +G+L+AF+PNY + L FR 
Sbjct: 129 VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRL 188

Query: 126 LVGLGLGGGPVLASWF-LEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184
           LVG+G+GG  V A     EF+P   R     + Q F+++G +L   +A+ +     WRWL
Sbjct: 189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWL 245

Query: 185 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH 244
               + P+ L  LL    PESPR+L  +GR  EA  +L++IAKING KLP+         
Sbjct: 246 QLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAE-------- 297

Query: 245 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS 304
                 +LS S  +D                              +S+    + L +  +
Sbjct: 298 ------VLSLSLEKD-----------------------------LSSSKKQYSFLDLFRT 322

Query: 305 PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITS 364
           P L K+TL L +++F  AFSYYGLVL    L  G N                Y D+FI+ 
Sbjct: 323 PNLRKTTLCLMMLWFTTAFSYYGLVLDLGNL--GGN---------------IYLDLFISG 365

Query: 365 FAEFPGLLLAAAMVDRLGRKLSMSSMFFC--CCIFLVPLLFQQPKGLTTGLLFGARICIT 422
             E P  L+   ++DRLGR+ +M++        + L+  +      L T L    +  IT
Sbjct: 366 LVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGIT 425

Query: 423 VTFTVVYVYAPEV 435
             F +VY+Y  E+
Sbjct: 426 SAFQMVYLYTAEL 438

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score =  137 bits (345), Expect = 8e-35
 Identities = 92/345 (26%), Positives = 157/345 (45%), Gaps = 42/345 (12%)

Query: 4   KSDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSP 63
           ++D+E+     +  I   G G+FQ  +    G+  +++ +E+ ++ FV P+ +    +  
Sbjct: 142 RADEEELAQQYELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPD 201

Query: 64  NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFF 123
           + + ++  +V+ GM+VGA+ WG ++D  GR++  LI   V       S+F   Y   LF 
Sbjct: 202 SGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFC 261

Query: 124 RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR 182
           R L G G+GG  P++ S+F EF+    RG  +     FW +G I  A +AW ++P  GW 
Sbjct: 262 RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321

Query: 183 WLLG-------------LSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKIN 229
           + +G             + AFP    +   +  PESPR+    G+  EA  +L+ I   N
Sbjct: 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381

Query: 230 GTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDST---- 285
                          +   + + S +  +   T  +         E  E++S+  T    
Sbjct: 382 ------------MRAKGHPEKVFSVNHIK---TIHQ-------EDELIEIESDTGTWYQR 419

Query: 286 -STLANSNMGGI-TALLILLSPELIKSTLLLWLVFFGNAFSYYGL 328
               A S  GGI    L   +PE+ + T+ L  V+F  +F YYGL
Sbjct: 420 CFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGL 464

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  129 bits (327), Expect = 3e-33
 Identities = 96/397 (24%), Positives = 148/397 (37%), Gaps = 83/397 (20%)

Query: 61  LSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP--NYY 118
            S     LI S+   G L+G+   G + D FGR+K  LI  ++     LL  FA   ++Y
Sbjct: 43  ASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFY 102

Query: 119 LLLFFRCLVGLGLGGGPVLASWFL-EFIPAPNRGFWMVIFQTFWTVGTILEAGIAW---L 174
           +L+  R +VGLG+GG  VL   ++ E  P   RG    ++Q   T G ++ A I      
Sbjct: 103 MLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNK 162

Query: 175 VMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLP 234
                GWR  LGL   P+ LLL+     PESPR+L LKG+  EAR VL   AK+ G    
Sbjct: 163 YSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVL---AKLRGVSDV 219

Query: 235 SGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMG 294
                                        +E+  ++DS+  + E +            + 
Sbjct: 220 D----------------------------QEIQEEKDSLERSVEAEKASWLELFRGKTVR 251

Query: 295 GITALLILLSPELIKSTLLLWLVFFG-NAFSYYGLVLLTTELNNGQNKCVSNELQSGKSR 353
               + ++         L ++    G NA  YY   +                       
Sbjct: 252 QRLLMGVM---------LQIFQQLTGINAIFYYSPTIF---------------------E 281

Query: 354 DINYGDVFITSFAE----FPGLLLAAAMVDRLGRK----LSMSSMFFCCCIFLVPLLFQQ 405
            +   D  + +       F    +A  +VDR GR+    L  + M   C + L   L   
Sbjct: 282 TLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGM-AICFLVLGVALLGV 340

Query: 406 PKGLTTGLLFGARICITVTF------TVVYVYAPEVS 436
            K    G++    I + + F       V +V   E+ 
Sbjct: 341 AKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELF 377

Length = 449

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  114 bits (288), Expect = 3e-28
 Identities = 91/424 (21%), Positives = 150/424 (35%), Gaps = 63/424 (14%)

Query: 14  VDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVV 73
           V   I      ++Q   +  + +  + +  ++  + F  PA+ + W L P Q   + S  
Sbjct: 2   VQNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAG 61

Query: 74  FAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGG 133
             GM  GA  +G ++D  GRR+  L + ++ S   LL A A N   LL  R L GLGLGG
Sbjct: 62  LIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGG 121

Query: 134 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSA-FP 191
             P L +   E+ P   RG  + +    + +G  +   +A  ++P  GWR L  +    P
Sbjct: 122 LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181

Query: 192 SSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSL 251
             LLLLL    PES  +L  K R    R ++  IA                       +L
Sbjct: 182 LLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIA--------------PQMQAEAQSAL 226

Query: 252 LSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 311
               + +                                      +    L   +  + T
Sbjct: 227 PEQKATQG----------------------------------TKRSVFKALFQGKTARIT 252

Query: 312 LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGL 371
           +LLWL++F      Y L     +L           ++ G S  +      + +F    G 
Sbjct: 253 VLLWLLYFMLLVGVYFLTNWLPKL----------MVELGFSLSLAATGGALFNFGGVIGS 302

Query: 372 LLAAAMVDRLGRKLSMS-SMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 430
           ++   + DRLG +++    +       LV      P  L   L   A   +    + +Y 
Sbjct: 303 IIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLL-LGAIAGFFVNGGQSGLYA 361

Query: 431 YAPE 434
               
Sbjct: 362 LMAL 365

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  107 bits (270), Expect = 2e-25
 Identities = 99/392 (25%), Positives = 153/392 (39%), Gaps = 73/392 (18%)

Query: 65  QESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS---AFAPNYYLLL 121
              L+ S+   G  +GA   G +SD FGR+K  LI A++     +L    AFA +  +L+
Sbjct: 72  LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLI 131

Query: 122 FFRCLVGLGLGGGPVLASWFL-EFIPAPNRGFWMVIFQTFWTVGTILEAGI---AWLVMP 177
             R L+G+G+G    L   +L E  P   RG    ++Q   T G ++  G       +  
Sbjct: 132 VGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN 191

Query: 178 RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGN 237
            LGWR  LGL   P+ LL L     PESPR+L  KGR  EAR  L   A++ GT      
Sbjct: 192 TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSL---ARLRGTSGE--- 245

Query: 238 LVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTS-TLANSNMGGI 296
                + EL ++                   +   I  + E +S   +  +L +S     
Sbjct: 246 -----DKELLDE------------------LELIDIKRSIEKRSVQPSWGSLFSSTRRIR 282

Query: 297 TALLILLSPELIKSTLLLWLVFF--GNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRD 354
             L +          +L W   F   NA  YY   +        +N  VS +     S  
Sbjct: 283 RRLFL--------GVVLQWFQQFTGINAIMYYSPTIF-------ENAGVSTDHAFLVS-- 325

Query: 355 INYGDVFITSFAEFPGLLLAAAMVDRLGRK--LSMSSMFFCCCIFLVPLLFQQ---PKGL 409
                  I     F    +A  +VDR GR+  L + +     C+F++ +L          
Sbjct: 326 ------IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSK 379

Query: 410 TTGLLFGARICITVTF------TVVYVYAPEV 435
           ++G +    I + + F       V +V   E+
Sbjct: 380 SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEI 411

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  102 bits (255), Expect = 5e-24
 Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 1/169 (0%)

Query: 31  LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN 90
           L    +G+    ++  LLS   P +     LS +Q  LI S    G  +G+   G +SD 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 91  FGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN 149
           FGRR+  L+  ++ +   LL AFA + +LLL  R L+GLG G   P  A+   E+ P   
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120

Query: 150 RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL 198
           RG  + +F   + +G +L   +  L+   LGWRWL  + A    LL LL
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 92.6 bits (230), Expect = 2e-20
 Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 6/198 (3%)

Query: 36  MGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK 95
           +GW+ +A +  L++ V   V   + L+    + + S        GA  +G+  D +GRR 
Sbjct: 19  LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL 78

Query: 96  GFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWF-LEFIPAPNRGFWM 154
             + + ++ SA  L   FAP Y  +   R ++G+G+GG    ++ + +E  P   R    
Sbjct: 79  PMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKAS 138

Query: 155 VIFQTFWTVGTILEAGIAWLVMPRLG--WRWLLGLSAFPSSLLLLLYSVTPESPRYLCLK 212
            +  + + VG ++ A +  LV+P  G  WR L  +S  P    L L    PE+  +   K
Sbjct: 139 GLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDW---K 195

Query: 213 GRTAEARHVLEKIAKING 230
            + A    V   +  + G
Sbjct: 196 EKHAGKALVRTMVDILYG 213

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 84.8 bits (210), Expect = 4e-18
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 1/164 (0%)

Query: 36  MGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK 95
             +++     +L   +   +     +SP +  L+ +    G  +     G +SD FGRR+
Sbjct: 4   AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63

Query: 96  GFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWM 154
             LI  ++ +   LL  FA + +LLL  R L GLG G   P  A+   ++ P   RG  +
Sbjct: 64  VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRAL 123

Query: 155 VIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL 198
            +    + +G  L   +  L+    GWR    + A  + L  +L
Sbjct: 124 GLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVL 167

Length = 346

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 75.5 bits (186), Expect = 9e-15
 Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 36/185 (19%)

Query: 76  GMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF---------APNYYLLL---FF 123
           G ++G    G  S+ FGRR    I A++   + L SA+           N   +     +
Sbjct: 67  GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIY 126

Query: 124 RCLVGLGLGGGPVLAS-----WFLEFIPAPNRGF------WMVIFQT----FWTVGTILE 168
           R + G+G+G    LAS     +  E  PA  RG       + +IF      F        
Sbjct: 127 RIIGGIGVG----LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARS 182

Query: 169 AGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKI 228
              +WL     GWR++    A P+ L L+L    PE+PRYL  +G+  +A  +L    KI
Sbjct: 183 GDASWLNT--DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILR---KI 237

Query: 229 NGTKL 233
            G  L
Sbjct: 238 MGNTL 242

Length = 479

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 19/182 (10%)

Query: 34  AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR 93
           A +G++ +  + +L++ V   VQ  + L+  Q + + S  F     G    G + D +GR
Sbjct: 25  AWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGR 84

Query: 94  RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGG------GPVLASWFLEFIPA 147
           R   +I+ ++ S   L   FAP Y+ L   R ++G+G+ G        V+ SW     P 
Sbjct: 85  RLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW-----PK 139

Query: 148 PNR----GFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTP 203
             R    GF +  F    ++G ++ A +  LV+P  GWR L  +   P    L L    P
Sbjct: 140 HLRNKASGFLISGF----SIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLP 195

Query: 204 ES 205
           E+
Sbjct: 196 EA 197

Length = 496

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 6/185 (3%)

Query: 17  AIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAG 76
            ++        L  LA+  + +        LL+++   +Q +  LS  +  L+ S+   G
Sbjct: 168 LLLLFLLRLLLLLALAFFLLSFG----YYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLG 223

Query: 77  MLVGAYSWGIVSDNFGRRKGFL-ITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG- 134
            ++GA   G++SD  GRR+  L I  ++ +   LL A AP+  LLL    L+G GLG   
Sbjct: 224 GILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283

Query: 135 PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSL 194
           P L +   E  P   RG    +F TF ++G  L   +A L++   G+  +  + A  + L
Sbjct: 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343

Query: 195 LLLLY 199
             LL 
Sbjct: 344 AALLL 348

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 44/162 (27%), Positives = 64/162 (39%), Gaps = 16/162 (9%)

Query: 61  LSPNQESLITSVVFAGMLVGAYSWGIV---------SDNFGRRKGFLITAIVTSAAGLLS 111
           L P    L  S   AG L+ AY+ G+          +    RR+  L    +   + LLS
Sbjct: 36  LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS 95

Query: 112 AFAPNYYLLLFFRCLVGLGLGG-GPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAG 170
           A AP++ +LL  R L GL  G    + A+     +P   RG  + +  T  T+ T+L   
Sbjct: 96  ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVP 155

Query: 171 IAWLVMPRLGWRW------LLGLSAFPSSLLLLLYSVTPESP 206
           +   +    GWR       +L L A      LL  S    S 
Sbjct: 156 LGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSL 197

Length = 394

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 35/237 (14%)

Query: 16  EAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLW-----HLSPNQESLIT 70
           E   T  FG      +  AG+G+ +++ ++  +S V   +  ++      L  +  + + 
Sbjct: 3   EEADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVN 62

Query: 71  SVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNY------YLLLFFR 124
                G L G   +G ++D  GR++ + +  I+   A + S  +P          L F+R
Sbjct: 63  GSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWR 122

Query: 125 CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLV-------M 176
             +G+G+GG  P+ A    EF     RG  M         G +  A +A +V       +
Sbjct: 123 FWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSL 182

Query: 177 PRLG----------------WRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAE 217
                               WR L+G  A P+ L L      PE+PRY     +  E
Sbjct: 183 EAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVE 239

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 10/167 (5%)

Query: 47  LLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA 106
            LSF  P +Q    LS  Q   + S    G +VG +  G + D FG RK   +  ++   
Sbjct: 12  NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGV 71

Query: 107 AGLLSAFAPNYYLLLFFRCLVGLGL-----GGGPVLASWFLEFIPAPNRGFWMVIFQTFW 161
              L AFA  Y  L   R L+G        G   ++ASWF    PA  R   + IF +  
Sbjct: 72  FTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWF----PASERATAVSIFNSAQ 127

Query: 162 TVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESPR 207
            +G I+   +   ++    W+W   +      +  +L     P+ P+
Sbjct: 128 GLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 53.8 bits (129), Expect = 9e-08
 Identities = 38/176 (21%), Positives = 79/176 (44%), Gaps = 1/176 (0%)

Query: 34  AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR 93
           A +G++ +  + ML+ ++   +++   L+  + + + +  F G   G   +G+++D FGR
Sbjct: 23  AWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGR 82

Query: 94  RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWF-LEFIPAPNRGF 152
           +   + + +  S    LS  A    +L   R +VG+G+ G    AS + +E  P   +  
Sbjct: 83  KPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSK 142

Query: 153 WMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRY 208
                 + + +G I+ A          GWR    +   P  L++ + +  PES  +
Sbjct: 143 ASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEW 198

Length = 426

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 6/168 (3%)

Query: 60  HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYL 119
            L   Q     S    G+L GA   G ++D  GR++  +++  +     L +A A ++  
Sbjct: 46  GLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPS 105

Query: 120 LLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR 178
           LL  R L G+GLGG  P L +   E +    RG  + +       G  L + I  L    
Sbjct: 106 LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD 165

Query: 179 LGWR---WLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLE 223
             WR   ++ G+   P  L+ LL    PES  +    G   +   VL 
Sbjct: 166 AAWRHIFYVGGVG--PLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLR 211

Length = 406

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 76  GMLVGAYSWGIV---------SDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126
           G+L+  Y+ G +         +D FGR+   L+   +   +  + A + N  +L+  R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 127 VGLGLG-GGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLL 185
            G G        A+   +  P   RG  + +      +G +L   +  ++   LGWR   
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120

Query: 186 GLSAFPSSL-LLLLYSVTPES 205
              A  +    +LL  + PE+
Sbjct: 121 LFLAILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 34/163 (20%), Positives = 57/163 (34%), Gaps = 33/163 (20%)

Query: 42  AMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITA 101
            ++M L +F  P + +      +   +  ++   G   G   WG +SD +GRR   L+  
Sbjct: 20  GIDMYLPAF--PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGL 77

Query: 102 IVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPV---------------------LASW 140
            + + + L  A + N   LL  R +   G   G V                     L   
Sbjct: 78  FIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPV 137

Query: 141 FLEFIP--APNRGFWMV-------IFQTFWTVGTILEAGIAWL 174
                P  AP  G +++       IF      G +L A I ++
Sbjct: 138 LA-LAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI 179

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 33/172 (19%), Positives = 56/172 (32%), Gaps = 10/172 (5%)

Query: 28  LCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIV 87
              L   G           L +++ P ++S+   S +  SL+         +G    G +
Sbjct: 219 ATFLFMTGH--------FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRL 270

Query: 88  SDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPV-LASWFLEFIP 146
           +D   RR       ++  A   L+    +  L L    L G         L +      P
Sbjct: 271 ADRGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAP 330

Query: 147 APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL 198
                    +    + +G  L A +  LV+  LG+     + A    L LLL
Sbjct: 331 -DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLL 381

Length = 394

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 35/170 (20%), Positives = 59/170 (34%), Gaps = 14/170 (8%)

Query: 47  LLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA 106
             +   P +     LS     L+ S       +  +  G VSD    R    I  I+ + 
Sbjct: 13  NFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAI 72

Query: 107 AGLLSAFAPNYYLLLFFRCLVGL--GLGGGP---VLASWFLEFIPAPNRGFWMVIFQTFW 161
             L   F+ + +++     L G+  G+G  P    +  WF        RG W+  +    
Sbjct: 73  VNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWF----SRSERGTWVSFWNCSH 128

Query: 162 TVGTILEAGIAWLVMPRL-GWRWLLGLSAFP----SSLLLLLYSVTPESP 206
            VG  L   +    +  L  W W+  +        S +  LL   +P+S 
Sbjct: 129 NVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC 178

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 14/160 (8%)

Query: 46  MLLSFVGPAVQSLWHLSPNQESLITSV-VFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT 104
            L S +G  ++S + LS  Q+ L+ ++ +  G L+    +G ++D FG RK  +++ ++ 
Sbjct: 31  TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALL-RLPYGFLTDRFGGRKWTILSMLLL 89

Query: 105 SAAGLLSAFA---PNYYLLLFFRCLVGLGLG----GGPVLASWFLEFIPAPNRGFWMVIF 157
               L  AFA   P+ + LL    L+GL       G P  + +F    P   +G  + I 
Sbjct: 90  LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFF----PKEKQGLALGIA 145

Query: 158 QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL 197
                +G  +   +A LV    G+     ++      L +
Sbjct: 146 -GAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184

Length = 417

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 10/146 (6%)

Query: 293 MGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKS 352
           +  +  LL LL   L++  LLL L FF  +F YYGL+                    G S
Sbjct: 159 LAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQ---------EVLGLS 209

Query: 353 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLS-MSSMFFCCCIFLVPLLFQQPKGLTT 411
                  + +       G LL   + DRLGR+   +        + L+ L       L  
Sbjct: 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269

Query: 412 GLLFGARICITVTFTVVYVYAPEVSH 437
             L      +   F  +   A E++ 
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAP 295

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 4/136 (2%)

Query: 36  MGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK 95
           +  +        L    P  Q +  LS     L+  +      +G    G +SD  GRR+
Sbjct: 209 LALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRR 268

Query: 96  ---GFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGG-GPVLASWFLEFIPAPNRG 151
                L+  I+ +    L +   +   LL    L+G G G   P L +   +  P   RG
Sbjct: 269 RLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERG 328

Query: 152 FWMVIFQTFWTVGTIL 167
               ++ T  ++G  L
Sbjct: 329 TASGLYNTAGSLGGAL 344

Length = 346

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 62  SPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP--NYYL 119
           +    S++  +     ++GA  W  ++  FG+++ FL+  ++ +   +L  F P  + +L
Sbjct: 255 NAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWL 314

Query: 120 LLFFRCLVGLGLGG 133
            L    L G+GLG 
Sbjct: 315 FLVLVVLAGIGLGL 328

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 13/131 (9%)

Query: 85  GIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGP----VLASW 140
           G ++  FG R+ FLI+    +   LL   APN  L++ FR +   G GGGP      ++ 
Sbjct: 58  GWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVI--QGFGGGPLIPLSFSTL 115

Query: 141 FLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL------LGLSAFPSSL 194
              + P   RG  M I+     V   L   +   ++    WRW+      +G+     + 
Sbjct: 116 LNIY-PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAF 174

Query: 195 LLLLYSVTPES 205
            +L       S
Sbjct: 175 FILPRDKPAAS 185

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 48/188 (25%), Positives = 72/188 (38%), Gaps = 26/188 (13%)

Query: 60  HLSPNQESLITSVVFA-GML---VGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP 115
              P    L T   FA G L   +GA  +G   D  GR+K  +IT ++     LL    P
Sbjct: 27  SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLP 86

Query: 116 NY--------YLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTIL 167
           +Y         LLL  R + G  LGG    A+ +L     P +  +   FQ       +L
Sbjct: 87  SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLL 146

Query: 168 EAGIAWLVMPRL---------GWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEA 218
            A +  L++  L         GWR    +SA    + L L     E+P +       A+ 
Sbjct: 147 LAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVF-----EKAQE 201

Query: 219 RHVLEKIA 226
           +H  ++  
Sbjct: 202 KHKKKRGP 209

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 24  GKFQLCVLAYAGM-GWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAY 82
            K  L  LA   M G++  A +M L +F   A+Q+    S +  S   S+  AG  +G  
Sbjct: 4   SKGFLVYLAGLSMLGFL--ATDMYLPAF--KAIQADLQTSASAVSASLSLFLAGFALGQL 59

Query: 83  SWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFR 124
            WG +SD +GR+   L    + +   L   +  +   LL  R
Sbjct: 60  LWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLR 101

Length = 401

>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 67  SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP--NYYLLLFFR 124
            L+     AG+L+G   W  +   FG++K FLI  ++ +   LL  F P  +  L++   
Sbjct: 275 YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVAL 334

Query: 125 CLVGLGLGGGPVL 137
            + G+G G    L
Sbjct: 335 IIAGVGTGIANPL 347

Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	439
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	99.98
PRK12307	426	putative sialic acid transporter; Provisional	99.98
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.97
TIGR00898	505	2A0119 cation transport protein.	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.97
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.97
PRK03699	394	putative transporter; Provisional	99.97
PRK11663	434	regulatory protein UhpC; Provisional	99.97
PRK09952	438	shikimate transporter; Provisional	99.97
KOG0569	485	consensus Permease of the major facilitator superf	99.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.97
PRK15075	434	citrate-proton symporter; Provisional	99.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.96
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.96
TIGR00893	399	2A0114 d-galactonate transporter.	99.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.96
TIGR00900	365	2A0121 H+ Antiporter protein.	99.96
PRK03893	496	putative sialic acid transporter; Provisional	99.96
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.96
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.96
PRK09705	393	cynX putative cyanate transporter; Provisional	99.96
PRK10133	438	L-fucose transporter; Provisional	99.96
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.96
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.95
PRK05122	399	major facilitator superfamily transporter; Provisi	99.95
PRK10091	382	MFS transport protein AraJ; Provisional	99.95
KOG0254	513	consensus Predicted transporter (major facilitator	99.95
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.95
PRK12382	392	putative transporter; Provisional	99.95
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.95
PRK11043	401	putative transporter; Provisional	99.95
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.95
PRK10504	471	putative transporter; Provisional	99.95
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.94
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.94
PRK03633	381	putative MFS family transporter protein; Provision	99.94
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.94
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.94
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.94
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.94
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.94
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.94
PRK09874	408	drug efflux system protein MdtG; Provisional	99.94
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.94
TIGR00901	356	2A0125 AmpG-related permease.	99.94
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.94
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.93
PRK10054	395	putative transporter; Provisional	99.93
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.93
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.93
KOG2532	466	consensus Permease of the major facilitator superf	99.92
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.92
PRK15011	393	sugar efflux transporter B; Provisional	99.92
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.92
PRK11902	402	ampG muropeptide transporter; Reviewed	99.92
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.92
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.91
PRK11010	491	ampG muropeptide transporter; Validated	99.91
KOG2533	495	consensus Permease of the major facilitator superf	99.91
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.91
PRK09528	420	lacY galactoside permease; Reviewed	99.9
TIGR00805	633	oat sodium-independent organic anion transporter.	99.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.9
PTZ00207	591	hypothetical protein; Provisional	99.9
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.9
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.9
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.89
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.88
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.88
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.88
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.87
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.87
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.87
KOG2615	451	consensus Permease of the major facilitator superf	99.85
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.85
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.84
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.84
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.83
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.81
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.8
PF13347	428	MFS_2: MFS/sugar transport protein	99.8
PRK09669	444	putative symporter YagG; Provisional	99.79
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.76
PRK10429	473	melibiose:sodium symporter; Provisional	99.75
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.75
PRK11462	460	putative transporter; Provisional	99.74
PRK10642	490	proline/glycine betaine transporter; Provisional	99.71
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.7
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.69
PRK09848	448	glucuronide transporter; Provisional	99.69
COG2211	467	MelB Na+/melibiose symporter and related transport	99.68
KOG2563	480	consensus Permease of the major facilitator superf	99.67
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.66
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.62
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.61
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.6
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.6
PRK15011	393	sugar efflux transporter B; Provisional	99.6
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.58
PRK09528	420	lacY galactoside permease; Reviewed	99.58
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.58
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.58
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.58
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.56
PRK05122	399	major facilitator superfamily transporter; Provisi	99.55
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.54
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.54
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.53
PRK03545	390	putative arabinose transporter; Provisional	99.52
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.52
PRK09874	408	drug efflux system protein MdtG; Provisional	99.52
PRK10489	417	enterobactin exporter EntS; Provisional	99.51
PRK12382	392	putative transporter; Provisional	99.49
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.48
PRK03633	381	putative MFS family transporter protein; Provision	99.47
PRK03893	496	putative sialic acid transporter; Provisional	99.46
PRK09705	393	cynX putative cyanate transporter; Provisional	99.45
PRK03699	394	putative transporter; Provisional	99.45
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.44
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.44
TIGR00893	399	2A0114 d-galactonate transporter.	99.44
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.44
PRK09952	438	shikimate transporter; Provisional	99.43
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.43
PRK12307	426	putative sialic acid transporter; Provisional	99.42
TIGR00891	405	2A0112 putative sialic acid transporter.	99.42
KOG3626	735	consensus Organic anion transporter [Secondary met	99.42
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.41
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.4
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.4
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.4
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.4
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.39
TIGR00900	365	2A0121 H+ Antiporter protein.	99.39
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.38
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.38
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.38
PRK10504	471	putative transporter; Provisional	99.37
PRK11010	491	ampG muropeptide transporter; Validated	99.36
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.35
PRK11663	434	regulatory protein UhpC; Provisional	99.35
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.34
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.34
TIGR00895	398	2A0115 benzoate transport.	99.34
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.34
PRK15075	434	citrate-proton symporter; Provisional	99.34
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.33
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.32
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.31
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.31
KOG0569	485	consensus Permease of the major facilitator superf	99.3
PLN00028	476	nitrate transmembrane transporter; Provisional	99.29
PRK10054	395	putative transporter; Provisional	99.29
PRK11902	402	ampG muropeptide transporter; Reviewed	99.28
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.28
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.27
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.27
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.26
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.24
PRK10091	382	MFS transport protein AraJ; Provisional	99.24
TIGR00898	505	2A0119 cation transport protein.	99.24
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.24
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.23
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.22
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.2
PRK09848	448	glucuronide transporter; Provisional	99.19
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.19
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.19
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.18
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.18
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.18
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.18
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.17
PRK10429	473	melibiose:sodium symporter; Provisional	99.16
PRK10133	438	L-fucose transporter; Provisional	99.13
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.13
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.12
TIGR00901	356	2A0125 AmpG-related permease.	99.12
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.11
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.11
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.1
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.1
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.1
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.08
PRK09669	444	putative symporter YagG; Provisional	99.07
PRK11043	401	putative transporter; Provisional	99.05
PF13347	428	MFS_2: MFS/sugar transport protein	99.05
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.03
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.03
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.99
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.93
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.92
PRK11462	460	putative transporter; Provisional	98.92
COG2211	467	MelB Na+/melibiose symporter and related transport	98.9
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.88
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.87
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.84
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.83
KOG0637	498	consensus Sucrose transporter and related proteins	98.8
COG0477	338	ProP Permeases of the major facilitator superfamil	98.8
KOG3762	618	consensus Predicted transporter [General function	98.76
KOG2532	466	consensus Permease of the major facilitator superf	98.75
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.75
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.75
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.74
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.71
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.7
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.7
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.7
KOG0254	513	consensus Predicted transporter (major facilitator	98.69
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.68
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.65
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.61
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.58
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.48
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.46
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.42
PF12832	77	MFS_1_like: MFS_1 like family	98.41
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.4
KOG3762	618	consensus Predicted transporter [General function	98.38
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.36
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.35
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.34
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.3
PTZ00207	591	hypothetical protein; Provisional	98.16
COG3202	509	ATP/ADP translocase [Energy production and convers	98.15
KOG2533	495	consensus Permease of the major facilitator superf	98.13
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.1
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.98
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.84
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.82
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.81
KOG3810	433	consensus Micronutrient transporters (folate trans	97.79
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.78
KOG2615	451	consensus Permease of the major facilitator superf	97.78
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.73
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.71
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.63
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.59
KOG2563	480	consensus Permease of the major facilitator superf	97.42
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.3
TIGR00805	633	oat sodium-independent organic anion transporter.	97.29
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.28
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.16
PRK03612	521	spermidine synthase; Provisional	97.03
PF12832	77	MFS_1_like: MFS_1 like family	96.95
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.89
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.68
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.6
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.48
KOG3097	390	consensus Predicted membrane protein [Function unk	96.45
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.34
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.22
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	95.88
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	95.15
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.11
KOG3880	409	consensus Predicted small molecule transporter inv	94.01
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.74
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	93.61
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	93.56
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.11
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	91.97
COG0477	338	ProP Permeases of the major facilitator superfamil	89.69
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	89.38
KOG3810	433	consensus Micronutrient transporters (folate trans	89.26
KOG0637	498	consensus Sucrose transporter and related proteins	88.67
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	88.47
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	86.18
KOG2881	294	consensus Predicted membrane protein [Function unk	85.02
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	81.58
COG4262	508	Predicted spermidine synthase with an N-terminal m	80.98
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	80.49

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.6e-37  Score=312.22  Aligned_cols=408  Identities=25%  Similarity=0.452  Sum_probs=304.9

Q ss_pred             HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchh
Q 013655           15 DEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRR   94 (439)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r   94 (439)
                      ++..++.+.++++|.+++++.++.+..++....++..+|.+.++++++..+.+++.+++.++.+++++++|+++||+|||
T Consensus       153 d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR  232 (742)
T TIGR01299       153 ELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK  232 (742)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            33445667788899988888888888888888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013655           95 KGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW  173 (439)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~  173 (439)
                      ++++++.++.+++.++.+++++++.++++|++.|++.|.. ++..+++.|++|+++||+.+++...+..+|.++++.++.
T Consensus       233 ~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~  312 (742)
T TIGR01299       233 QCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW  312 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988 788899999999999999999999999999999998887


Q ss_pred             Hhhcc-------------cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCcc
Q 013655          174 LVMPR-------------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVS  240 (439)
Q Consensus       174 ~l~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (439)
                      .+...             .+||..+++.+++.++.+++.+++||+|+|...+++.+++.+.++++.+.++.....  . .
T Consensus       313 ~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~--~-~  389 (742)
T TIGR01299       313 AIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGH--P-E  389 (742)
T ss_pred             HHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCc--h-h
Confidence            66543             358999998888888887788889999999998999899988888876544321100  0 0


Q ss_pred             chhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccc-cchhhccccchhHHHHHHhhChHHHHHHHHHHHHHH
Q 013655          241 DWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSED-STSTLANSNMGGITALLILLSPELIKSTLLLWLVFF  319 (439)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  319 (439)
                       .....++.+.. +  .+++.     .+.+     +....... .....+......|.+++.++++++++.++++++.|+
T Consensus       390 -~~~~~~~~~~~-~--~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf  455 (742)
T TIGR01299       390 -KVFSVNHIKTI-H--QEDEL-----IEIE-----SDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWF  455 (742)
T ss_pred             -HHHHHHHHHHh-h--hhhhh-----hccc-----ccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHH
Confidence             00000000000 0  00000     0000     00000000 000011112233456888999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHhhcCC---C-----------------------------------------------------ccc
Q 013655          320 GNAFSYYGLVLLTTELNNGQ---N-----------------------------------------------------KCV  343 (439)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~---~-----------------------------------------------------~~~  343 (439)
                      +..+.||++..|.|.+....   .                                                     .|.
T Consensus       456 ~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (742)
T TIGR01299       456 TLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECT  535 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccc
Confidence            99999999999999764220   0                                                     000


Q ss_pred             cccc----------------------------------------ccCCCC---------CCchhhHHHHhhhhhhHHHHH
Q 013655          344 SNEL----------------------------------------QSGKSR---------DINYGDVFITSFAEFPGLLLA  374 (439)
Q Consensus       344 ~~~~----------------------------------------~~g~~~---------~~~~~~~~~~~i~~~~g~~~~  374 (439)
                      ....                                        ..|-+.         ...+....+.+++.++|.+++
T Consensus       536 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~  615 (742)
T TIGR01299       536 FDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVS  615 (742)
T ss_pred             eeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000                                        000000         011444667778899999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          375 AAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       375 g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      |+++||+|||+++.++.++.+++.+++.+.++....+++.++.+++.++.++..+++++|++|++
T Consensus       616 g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~  680 (742)
T TIGR01299       616 ALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSD  680 (742)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            99999999999999999999998887777666555555666777777788888999999999964

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=6e-36  Score=263.87  Aligned_cols=394  Identities=45%  Similarity=0.734  Sum_probs=330.8

Q ss_pred             HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 013655           14 VDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR   93 (439)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~   93 (439)
                      .+++....++.+++|...+....++....+.....+.+.|...+.+|.+..+..++......+..+++..+|.++|++||
T Consensus        63 v~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~gr  142 (528)
T KOG0253|consen   63 VDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGR  142 (528)
T ss_pred             ehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhc
Confidence            45666778899999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013655           94 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW  173 (439)
Q Consensus        94 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~  173 (439)
                      |+...+..+..++..++...++|+..+++.|.+.|+|.|+.|+..++-.|..|..+|+..+-.. ..+.+|.++...++.
T Consensus       143 r~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law  221 (528)
T KOG0253|consen  143 RKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAW  221 (528)
T ss_pred             chhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888889999999999999887777 999999999999999


Q ss_pred             HhhcccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccC
Q 013655          174 LVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLS  253 (439)
Q Consensus       174 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (439)
                      .++.++|||+.+...+++..+..+..+++||+|++...+++++++.+.++++.+.|+.+.|.+......+.+.++++   
T Consensus       222 ~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~---  298 (528)
T KOG0253|consen  222 GVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEE---  298 (528)
T ss_pred             HHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhh---
Confidence            99999999999999888888888889999999999999999999999999999999988776544322211111110   


Q ss_pred             CCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 013655          254 SSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT  333 (439)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (439)
                        ++-+                       +.+.++.++.+.   ...+++++..++.+++.+..||.+.+.||+......
T Consensus       299 --~~~~-----------------------~~~~~a~ke~rg---~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLltt  350 (528)
T KOG0253|consen  299 --SDLD-----------------------DSKSSAAKEVRG---GTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTT  350 (528)
T ss_pred             --hchh-----------------------hhhhcccccccc---chHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence              0000                       000111111111   677899999999999999999999999999998887


Q ss_pred             HhhcCCCccccc----c--cc----cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 013655          334 ELNNGQNKCVSN----E--LQ----SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF  403 (439)
Q Consensus       334 ~~~~~~~~~~~~----~--~~----~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  403 (439)
                      .+.+....|...    +  .+    ...+.+..+....+..+...+|.++.++++||+|||++|..++++++++.+.+..
T Consensus       351 elfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~  430 (528)
T KOG0253|consen  351 ELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTT  430 (528)
T ss_pred             HHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            776543322111    1  11    1234444577788888999999999999999999999999999999999999988


Q ss_pred             ccccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          404 QQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       404 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      +.+.....++.+...++.++.+.+.|+|+.|++|+.
T Consensus       431 c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTa  466 (528)
T KOG0253|consen  431 CKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTA  466 (528)
T ss_pred             hcCcchhHHHHHHHHHHHhchheEEEEecCcccchh
Confidence            887777778888899999999999999999999973

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4e-33  Score=252.48  Aligned_cols=346  Identities=21%  Similarity=0.219  Sum_probs=274.3

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 013655           22 GFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITA  101 (439)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~  101 (439)
                      ..+++|+++++.+.+++...++.+-..+...|.+.++.++|.+|.|++.+.+.+.+.++..+.|.++||.++|+.+.+++
T Consensus        22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL  101 (448)
T COG2271          22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH--HHhhcc
Q 013655          102 IVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA--WLVMPR  178 (439)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~--~~l~~~  178 (439)
                      +++++..++++++++.+.+.++.++.|...|.. |++...++.|+++++||+..++.+.+.++|+.+.|++.  +++..+
T Consensus       102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~  181 (448)
T COG2271         102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH  181 (448)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999 89999999999999999999999999999999999999  889888


Q ss_pred             cchhHHHHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCC
Q 013655          179 LGWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSN  257 (439)
Q Consensus       179 ~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (439)
                      .+||..|++.++++++..+. ++..+++|+..--. ..++       .+                               
T Consensus       182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP-~ie~-------~~-------------------------------  222 (448)
T COG2271         182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP-PIEE-------YR-------------------------------  222 (448)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CHHH-------hh-------------------------------
Confidence            89999999999888876554 56667776421100 0000       00                               


Q ss_pred             CCCCchhhhcccCCch-hHhhhccccccchhhccccchhH-HHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 013655          258 EDDTTPKEMARDEDSI-SEAKEMKSEDSTSTLANSNMGGI-TALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL  335 (439)
Q Consensus       258 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (439)
                                +++.+. +++++++           ..+.+ .-.+.++++   +..|.+++......+.-|++..|.|.|
T Consensus       223 ----------~d~~e~~~~~~~~~-----------~ls~~~i~~~YVL~N---k~iW~la~a~vfvYivR~gi~dW~p~Y  278 (448)
T COG2271         223 ----------GDPLEIYEEEKENE-----------GLTAWQIFVKYVLKN---KLIWLLALANVFVYVVRYGINDWGPLY  278 (448)
T ss_pred             ----------cCchhhhhhhccCC-----------CccHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence                      000000 0000000           00000 023334444   445677777777788889999999999


Q ss_pred             hcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHh--hhHHHHH-HHHHHHHHHHHHHhhcccc--chh
Q 013655          336 NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL--GRKLSMS-SMFFCCCIFLVPLLFQQPK--GLT  410 (439)
Q Consensus       336 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~-~~~~~~~~~~~~~~~~~~~--~~~  410 (439)
                      ..+.         .+++...+....+++-+++++|.+++||++||+  |||..+. ++.+...++.+.+...++.  ++.
T Consensus       279 L~e~---------k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~  349 (448)
T COG2271         279 LSEV---------KGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLD  349 (448)
T ss_pred             HHHh---------cCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHH
Confidence            9774         568888889999999999999999999999996  6776554 4555555566666665544  666


Q ss_pred             hhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          411 TGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       411 ~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      .++++++|+...+...+.-....|..|++
T Consensus       350 ~~~l~~iGf~IyGPqmLiGl~a~e~~pK~  378 (448)
T COG2271         350 AILLFIIGFLIYGPQMLIGLAAAEFVPKK  378 (448)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccccHh
Confidence            77788888888777777777777777753

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.2e-31  Score=265.35  Aligned_cols=364  Identities=21%  Similarity=0.312  Sum_probs=255.5

Q ss_pred             HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 013655           18 IVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLW-----HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG   92 (439)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G   92 (439)
                      .++.+..++++..+.++.++.+..+++....+...|.+.+++     +.+..+.+++.+...++..++++++|+++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~G   84 (502)
T TIGR00887         5 ADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLG   84 (502)
T ss_pred             hhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            355677888898898899999999999999999888876642     345667899999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcch------HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHH
Q 013655           93 RRKGFLITAIVTSAAGLLSAFAPN------YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGT  165 (439)
Q Consensus        93 ~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~  165 (439)
                      ||+++.++.++..++.++.+++++      ++.++++|++.|++.|.. +....++.|++|+++||+++++.+.+..+|.
T Consensus        85 rr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~  164 (502)
T TIGR00887        85 RKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI  164 (502)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence            999999999999999888888765      788999999999999998 7788999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc-----------------------ccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHH-HHHH
Q 013655          166 ILEAGIAWLVMP-----------------------RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAE-ARHV  221 (439)
Q Consensus       166 ~i~~~l~~~l~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  221 (439)
                      .+++.++.++..                       .++||..+.+.+++.++..+..+++||+|+|...+++.++ +.+.
T Consensus       165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~  244 (502)
T TIGR00887       165 LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD  244 (502)
T ss_pred             HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHH
Confidence            999988776532                       2479999998888888877778889999999877666543 4433


Q ss_pred             HHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHH
Q 013655          222 LEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLI  301 (439)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (439)
                      ..+..+.+..   +.      .++.++                        .++++  +          .   ...++++
T Consensus       245 ~~~~~~~~~~---~~------~~~~~~------------------------~~~~~--~----------~---~~~~~~~  276 (502)
T TIGR00887       245 MSAVLQVKIE---AE------PDEVEK------------------------ASTAV--E----------V---PKASWSD  276 (502)
T ss_pred             HHHHhccccc---cC------cccccc------------------------hhccc--c----------c---hhhhHHH
Confidence            3333211000   00      000000                        00000  0          0   0014555


Q ss_pred             hhCh----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCc------------hhhHHHHhh
Q 013655          302 LLSP----ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN------------YGDVFITSF  365 (439)
Q Consensus       302 l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------------~~~~~~~~i  365 (439)
                      ++++    +.++.++.....+++..+.+|+...+.|.+..+.+          .+...+            .....+..+
T Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (502)
T TIGR00887       277 FFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIG----------YSPPAATNNAYEELYKTAVGNLIIALA  346 (502)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHc----------CCCCccchhHHHHHHHHHHHHHHHHHH
Confidence            5532    23344444455566666777887777777764432          332211            112334455


Q ss_pred             hhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc---ccchhhhHHHH-HHhhhhheeeeeeeeccccccCC
Q 013655          366 AEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ---PKGLTTGLLFG-ARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       366 ~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      +.+++.++.++++||+|||++++.+.++++++.+++....   +........++ ..++..+..+..+.+.+|++|++
T Consensus       347 ~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~  424 (502)
T TIGR00887       347 GTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTR  424 (502)
T ss_pred             HHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchh
Confidence            6778999999999999999998888877776655444321   11111122222 22223345677888899999975

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=1.4e-30  Score=250.71  Aligned_cols=359  Identities=24%  Similarity=0.332  Sum_probs=256.8

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 013655           22 GFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITA  101 (439)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~  101 (439)
                      ..+++++..+....+.++..++......+..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~   89 (398)
T TIGR00895        10 PLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI   89 (398)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence            34556666677777777777888888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655          102 IVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG  180 (439)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g  180 (439)
                      ++.+++.++..+.++++.+++.+++.|++.+.. +...+++.|++|+++|++++++...+..+|..+++.+++++.+..|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  169 (398)
T TIGR00895        90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG  169 (398)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999988 7778999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhHHHHHHH-HHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCC
Q 013655          181 WRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNED  259 (439)
Q Consensus       181 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (439)
                      |+..+++.++..++. .+...++|++++....+ +.++..+..++.......+.                         +
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------------~  223 (398)
T TIGR00895       170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA-------------------------Q  223 (398)
T ss_pred             ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc-------------------------c
Confidence            999998886554444 44456677776443222 11221211111111000000                         0


Q ss_pred             CCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Q 013655          260 DTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQ  339 (439)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (439)
                      . .      .+    ++++..         +.   .....+.+++++..+..+..++..++....++....+.|.+..+ 
T Consensus       224 ~-~------~~----~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  279 (398)
T TIGR00895       224 S-A------LP----EQKATQ---------GT---KRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE-  279 (398)
T ss_pred             c-c------cc----cccccc---------ch---hhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            0 0      00    000000         00   00123334444444555555555555556666666666755433 


Q ss_pred             CcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHh
Q 013655          340 NKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARI  419 (439)
Q Consensus       340 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  419 (439)
                               .+.+....+.......++.++++++.+++.||+|||..+...........+......+.+......++.|+
T Consensus       280 ---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  350 (398)
T TIGR00895       280 ---------LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGF  350 (398)
T ss_pred             ---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence                     33666666788888889999999999999999999855444443333333333324455556667778888


Q ss_pred             hhhheeeeeeeeccccccCC
Q 013655          420 CITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       420 ~~~~~~~~~~~~~~e~~p~~  439 (439)
                      +.+...+..+++.+|.+|++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~  370 (398)
T TIGR00895       351 FVNGGQSGLYALMALFYPTA  370 (398)
T ss_pred             HHHHHHHHHHHHHhhcCCHH
Confidence            88888888999999998863

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=1.1e-30  Score=252.20  Aligned_cols=330  Identities=22%  Similarity=0.234  Sum_probs=252.7

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655           23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI  102 (439)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~  102 (439)
                      .++++|.++.+.++..+..+++....+...|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (406)
T PRK11551          9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA   88 (406)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            34577888888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655          103 VTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW  181 (439)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~  181 (439)
                      +.+++.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  168 (406)
T PRK11551         89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW  168 (406)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            99999888889999999999999999998887 77778999999999999999999999999999999999998888999


Q ss_pred             hHHHHHhHHHHHHHHH-HHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCC
Q 013655          182 RWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDD  260 (439)
Q Consensus       182 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (439)
                      +..|++.+++.++..+ ...++||++++...+.+.++.++                                        
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------------------------  208 (406)
T PRK11551        169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP----------------------------------------  208 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh----------------------------------------
Confidence            9999887766555544 34556776432111000000000                                        


Q ss_pred             CchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCC
Q 013655          261 TTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQN  340 (439)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (439)
                                                           ..+.+++++..+.....+..++.....++....|.|.+..+  
T Consensus       209 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--  249 (406)
T PRK11551        209 -------------------------------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG--  249 (406)
T ss_pred             -------------------------------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence                                                 01111111111122222333333444455566667777644  


Q ss_pred             cccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhh
Q 013655          341 KCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARIC  420 (439)
Q Consensus       341 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  420 (439)
                              .|.+....+.......++.++++++.|++.||+|||+.+..+.+..+++.+.+...++.+...+..++.+++
T Consensus       250 --------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  321 (406)
T PRK11551        250 --------QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF  321 (406)
T ss_pred             --------CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence                    336666778888888899999999999999999999998887777666666665555555555566667777


Q ss_pred             hhheeeeeeeeccccccCC
Q 013655          421 ITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       421 ~~~~~~~~~~~~~e~~p~~  439 (439)
                      .++..+..+++..|.+|++
T Consensus       322 ~~~~~~~~~~~~~~~~p~~  340 (406)
T PRK11551        322 VVGGQSVLYALAPLFYPTQ  340 (406)
T ss_pred             HHhHHHHHHHHHHHHcchh
Confidence            7777788888888888864

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=2.5e-30  Score=249.41  Aligned_cols=353  Identities=16%  Similarity=0.180  Sum_probs=242.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655           25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT  104 (439)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  104 (439)
                      |.+|..+..+++.+++++++....++..|.+.+++|+|..+.|++.+++.+++.+++++.|+++||+|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            45677788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc------
Q 013655          105 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP------  177 (439)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~------  177 (439)
                      +++.++.+++++++.+++.|++.|++.+.. +....++.|++|+++|++++++++.+.++|..+++++++++.+      
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  163 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA  163 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999999999988 6667889999999999999999999999999999999998864      


Q ss_pred             ccchhHHHHHhHHHHHHHHH-HHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCC
Q 013655          178 RLGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSS  256 (439)
Q Consensus       178 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (439)
                      ..|||..|++.+++.++..+ .++++||+|+...  .-.+++++..++..+.+..+.             ++.+      
T Consensus       164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~--~l~~~~~~~~~~~~~~~~~~~-------------~~~~------  222 (412)
T TIGR02332       164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK--WLDEEDKKALKEMIDNDQLTL-------------EQPE------  222 (412)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCC--CCCHHHHHHHHHHHHhccccc-------------cccc------
Confidence            46999999998877766544 4566788764210  001111111111100000000             0000      


Q ss_pred             CCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 013655          257 NEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN  336 (439)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (439)
                             +   +.+      ++             .......++.++++.    ++...+.+++....++....|.|.+.
T Consensus       223 -------~---~~~------~~-------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l  269 (412)
T TIGR02332       223 -------G---AFA------HA-------------AMPQRSMLREIFTPA----IMLYTLAYFCLTNTLSAINIWTPQIL  269 (412)
T ss_pred             -------c---ccc------cc-------------cccHHHHHHHhcChH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   0   000      00             000001344455432    34455555666667777888888888


Q ss_pred             cCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhhccccchhhhHHH
Q 013655          337 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLS-MSSMFFCCCIFLVPLLFQQPKGLTTGLLF  415 (439)
Q Consensus       337 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (439)
                      .+.+        .+.+...++.......++.++|+++.|+++||++||+. ......+.++.++......+.........
T Consensus       270 ~~~~--------~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (412)
T TIGR02332       270 QSFN--------QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGII  341 (412)
T ss_pred             HhcC--------CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            5421        23455556777888889999999999999999997664 33344344433322222222222222222


Q ss_pred             HHHhhhhheeeeeeeeccccccCC
Q 013655          416 GARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       416 ~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      +.+++.....+..++...|.+|++
T Consensus       342 ~~~~g~~~~~~~~~~~~~~~~~~~  365 (412)
T TIGR02332       342 MASMGSFSAMAIFWTTPDQSISLQ  365 (412)
T ss_pred             HHHHHhhhhhhHHHhhcccccchH
Confidence            223333333344445556677653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=4.3e-30  Score=247.97  Aligned_cols=351  Identities=20%  Similarity=0.277  Sum_probs=244.3

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655           23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI  102 (439)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~  102 (439)
                      .++++|+.+..+.++++..++.....++..|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            45677888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-
Q 013655          103 VTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-  180 (439)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-  180 (439)
                      +.+++.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  165 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD  165 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999988 7777899999999999999999999999999999999999888766 


Q ss_pred             -hhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCC
Q 013655          181 -WRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNED  259 (439)
Q Consensus       181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (439)
                       ||..|++.+++.++..+....+||++.+...+++.++..+   ..++..+++                           
T Consensus       166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---------------------------  215 (405)
T TIGR00891       166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRT---MVDILYGGE---------------------------  215 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhh---HHHHHhccc---------------------------
Confidence             9999988776666665555666776432211100000000   000000000                           


Q ss_pred             CCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Q 013655          260 DTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQ  339 (439)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (439)
                                 +..+.               ..++.....+... ++.+..+...................+.|.+..+ 
T Consensus       216 -----------~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  267 (405)
T TIGR00891       216 -----------HRIAN---------------IVMTLAAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKA-  267 (405)
T ss_pred             -----------hhhhh---------------hhhhhhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-
Confidence                       00000               0000000111100 1111112222222222222233333444544422 


Q ss_pred             CcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-hhccccchhhhHHHHHH
Q 013655          340 NKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPL-LFQQPKGLTTGLLFGAR  418 (439)
Q Consensus       340 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g  418 (439)
                              +.|.+....+...+...++.++++++.+++.||+|||+.+..+..+.++..+.+ ....+.+...+..++.+
T Consensus       268 --------~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (405)
T TIGR00891       268 --------DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ  339 (405)
T ss_pred             --------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence                    134666666777888889999999999999999999998887776654433322 23333333444445566


Q ss_pred             hhhhheeeeeeeeccccccCC
Q 013655          419 ICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       419 ~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      ++.++..+..+.+++|.+|++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~  360 (405)
T TIGR00891       340 MLVQGIWGILPKHLGEYFPTD  360 (405)
T ss_pred             HHHccchhhHHHHHhhhCCcc
Confidence            666666777778888988864

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.98  E-value=5.4e-30  Score=252.71  Aligned_cols=334  Identities=18%  Similarity=0.227  Sum_probs=231.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hHH-----HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 013655           28 LCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQ-ESL-----ITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITA  101 (439)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~-----~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~  101 (439)
                      +..+....+++++.+++...+++..|.+.++++.+.+. .++     ..++..++..+++++.|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34566677888999999999999999999998644322 122     247778999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcchHHH--------HHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013655          102 IVTSAAGLLSAFAPNYYL--------LLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA  172 (439)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~--------~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~  172 (439)
                      ++++++.++++++++++.        ++++|+++|++.|.. +...+++.|++|+++||++.++...+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999864        889999999999998 77789999999999999999999988888888887666


Q ss_pred             HHhh--------cccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhh
Q 013655          173 WLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH  244 (439)
Q Consensus       173 ~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (439)
                      ..+.        ..+|||..|++.+++.++..++...+||+|++...+++.++          .+++.            
T Consensus       175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~----------~~~~~------------  232 (490)
T PRK10642        175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQ----------GDREG------------  232 (490)
T ss_pred             HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhh----------hcccc------------
Confidence            5442        36899999999777666555556667887654311100000          00000            


Q ss_pred             hhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHh
Q 013655          245 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFS  324 (439)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                       .++                                .+          +   .++++++++. ++.+.......++....
T Consensus       233 -~~~--------------------------------~~----------~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~  265 (490)
T PRK10642        233 -LQD--------------------------------GP----------K---VSFKEIATKH-WRSLLTCIGLVIATNVT  265 (490)
T ss_pred             -ccc--------------------------------cc----------c---CCHHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence             000                                00          0   0344444432 23333333344455667


Q ss_pred             hhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-Hh-
Q 013655          325 YYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVP-LL-  402 (439)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~-~~-  402 (439)
                      +|....|.|.+....         .|.+............++.+++.++.|+++||+|||+.+..+.++..+..+. +. 
T Consensus       266 ~~~~~~~~p~~l~~~---------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  336 (490)
T PRK10642        266 YYMLLTYMPSYLSHN---------LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFIL  336 (490)
T ss_pred             HHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            777778888877331         2344444555666677888899999999999999999887776544332222 22 


Q ss_pred             -hccccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          403 -FQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       403 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                       ...+.....+..++.+++.+...+....+.+|++|++
T Consensus       337 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~  374 (490)
T PRK10642        337 INSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH  374 (490)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence             2222333334445555555555556667778888875

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.98  E-value=8.2e-30  Score=247.82  Aligned_cols=337  Identities=18%  Similarity=0.228  Sum_probs=238.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655           25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT  104 (439)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  104 (439)
                      ++++..+..+.+.++..++......+..|.+.+++|+|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            56666677788888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655          105 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW  183 (439)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~  183 (439)
                      +++.++.+++++++.++++|++.|++.+.. +....++.|++|+++|+++.++...+..+|.++++.+.+.+.+.++||.
T Consensus        94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~  173 (426)
T PRK12307         94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRA  173 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHH
Confidence            999999999999999999999999999887 7777889999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCch
Q 013655          184 LLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP  263 (439)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (439)
                      .|++..+..++........||++++..        +    +...  +.+               +.              
T Consensus       174 ~f~i~~~~~~~~~~~~~~~p~~~~~~~--------~----~~~~--~~~---------------~~--------------  210 (426)
T PRK12307        174 AFFVGLLPVLLVIYIRARAPESKEWEE--------A----KLSG--KGK---------------HS--------------  210 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCChHHHH--------h----hhhc--ccc---------------cc--------------
Confidence            998755443333222222333321100        0    0000  000               00              


Q ss_pred             hhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccc
Q 013655          264 KEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCV  343 (439)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (439)
                            ++..                   +.....++++++++..+.........+......+....+.|.+..+     
T Consensus       211 ------~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  260 (426)
T PRK12307        211 ------QSAW-------------------SVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-----  260 (426)
T ss_pred             ------ccch-------------------hhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence                  0000                   0000145556665554444433333333333334445566666543     


Q ss_pred             ccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHh--hh
Q 013655          344 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARI--CI  421 (439)
Q Consensus       344 ~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~  421 (439)
                           .|.+....+...+...++.++++++.|++.||+|||+.+..+.++.++..+.+....+........++++.  ..
T Consensus       261 -----~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (426)
T PRK12307        261 -----EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATN  335 (426)
T ss_pred             -----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhc
Confidence                 23555566777788889999999999999999999999888887776665544433222222222223332  22


Q ss_pred             hheeeeeeeeccccccCC
Q 013655          422 TVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       422 ~~~~~~~~~~~~e~~p~~  439 (439)
                      .+..+..+.++.|.+|++
T Consensus       336 ~~~~~~~~~~~~~~~p~~  353 (426)
T PRK12307        336 VGVGGLVPKFLYDYFPLE  353 (426)
T ss_pred             ccHhHHHHHHHHHhCcHH
Confidence            233344556678888863

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.1e-29  Score=233.65  Aligned_cols=318  Identities=21%  Similarity=0.245  Sum_probs=245.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Q 013655           26 FQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS  105 (439)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  105 (439)
                      ..+..++.+.++.|..+...+.+..++|.+.+++|+|....|++.++|.++..+++++...++||+.||++++....++.
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi   89 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI   89 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34555667777888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 013655          106 AAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL  184 (439)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~  184 (439)
                      ++.++.++++||+.++++|++.|+..|.. +...+...+..|+++|++++++...+..++.++|.+++.++.|.+|||..
T Consensus        90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~  169 (394)
T COG2814          90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT  169 (394)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999 77789999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCch
Q 013655          185 LGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP  263 (439)
Q Consensus       185 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (439)
                      |++.+++.++..+. +..+|  |+... +.+..+.                                             
T Consensus       170 F~~ia~l~ll~~~~~~~~lP--~~~~~-~~~~~~~---------------------------------------------  201 (394)
T COG2814         170 FLAIAVLALLALLLLWKLLP--PSEIS-GSLPGPL---------------------------------------------  201 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhCC--CccCC-CCCCcch---------------------------------------------
Confidence            99999888887665 56677  11000 0000000                                             


Q ss_pred             hhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccc
Q 013655          264 KEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCV  343 (439)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (439)
                                                       .....+++++..+......++++...+.  ..++..|.+.+.     
T Consensus       202 ---------------------------------~~~~~~l~~p~v~~~l~~t~l~~~g~F~--~ftYi~P~L~~v-----  241 (394)
T COG2814         202 ---------------------------------RTLLRLLRRPGVLLGLLATFLFMTGHFA--LYTYIRPFLESV-----  241 (394)
T ss_pred             ---------------------------------hHHHHHhcCchHHHHHHHHHHHHcchhh--hHHhHHHHHHHc-----
Confidence                                             0122234443333333333333332222  223334444332     


Q ss_pred             ccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc-cchhhhHHHHHHhhhh
Q 013655          344 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP-KGLTTGLLFGARICIT  422 (439)
Q Consensus       344 ~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~  422 (439)
                           .|++.+...+....++++.++|.+++|++.|| +.|+.+.....+.++..+.+.+..+ .+...+..++.|+...
T Consensus       242 -----~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~  315 (394)
T COG2814         242 -----AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFS  315 (394)
T ss_pred             -----cCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence                 44777777999999999999999999999999 8888888887777777776665544 4445555566666666


Q ss_pred             heeeeeeeecccccc
Q 013655          423 VTFTVVYVYAPEVSH  437 (439)
Q Consensus       423 ~~~~~~~~~~~e~~p  437 (439)
                      .......+..++..|
T Consensus       316 ~~~~~~~~~~a~~~p  330 (394)
T COG2814         316 PALQGLQTRLARLAP  330 (394)
T ss_pred             hhhhHHHHHhcccCC
Confidence            555555555555444

>TIGR00898 2A0119 cation transport protein

Probab=99.97  E-value=2.4e-30  Score=257.01  Aligned_cols=326  Identities=36%  Similarity=0.642  Sum_probs=250.2

Q ss_pred             HHHHHHhhhcCCC---chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 013655           50 FVGPAVQSLWHLS---PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL  126 (439)
Q Consensus        50 ~~~~~~~~~~~~s---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  126 (439)
                      ...+.+.++++++   ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4567788999999   8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCC
Q 013655          127 VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPES  205 (439)
Q Consensus       127 ~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  205 (439)
                      .|++.+.. +....++.|++|+++|+++.++...+..+|.++++.++..+.+   ||..+++.+++.++..+..+++||+
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~~es  266 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPES  266 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999997 7788999999999999999999999999999999998877643   9999999998888877777889999


Q ss_pred             chhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccc
Q 013655          206 PRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDST  285 (439)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (439)
                      |++...+++.+++.+..++..+.++.+.+.+        ..+.                     +  .+++.+.+++   
T Consensus       267 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~--------~~~~---------------------~--~~~~~~~~~~---  312 (505)
T TIGR00898       267 PRWLISQGRIEEALKILQRIAKINGKKLPAE--------VLSL---------------------S--LEKDLSSSKK---  312 (505)
T ss_pred             hHHHHHCCCHHHHHHHHHHHHHHcCCCCCHH--------HHhh---------------------h--hhhhhhhccC---
Confidence            9998888888777777776655443211100        0000                     0  0000000000   


Q ss_pred             hhhccccchhHHHHHHhhC-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHh
Q 013655          286 STLANSNMGGITALLILLS-PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITS  364 (439)
Q Consensus       286 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  364 (439)
                                ..+++++++ ++.++.++..++.++.....+|+...+.+.+.              .+   ......+.+
T Consensus       313 ----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~  365 (505)
T TIGR00898       313 ----------QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG--------------GN---IYLDLFISG  365 (505)
T ss_pred             ----------CCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC--------------CC---hHHHHHHHH
Confidence                      014566775 44455555666667777777777666554322              11   245556677


Q ss_pred             hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcccc--chhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          365 FAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPK--GLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       365 i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      +..+++.++.++++||+|||+.+..+.++.+++.+.+.+.++.  +......++.+++.+..++..+++.+|++|++
T Consensus       366 ~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  442 (505)
T TIGR00898       366 LVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV  442 (505)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence            8889999999999999999999999998888887777665443  33444555666777777888889999999963

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=1.7e-29  Score=238.93  Aligned_cols=305  Identities=14%  Similarity=0.063  Sum_probs=215.7

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHH
Q 013655           41 EAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLL  120 (439)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (439)
                      +...+..+++..|.+.+++|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......++++.+
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            34456677889999999999999999999999999999999999999999999988766555554444333333789999


Q ss_pred             HHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHH-HH
Q 013655          121 LFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL-LY  199 (439)
Q Consensus       121 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~-~~  199 (439)
                      ++.|++.|++.+...+....+.|++|+++|++++++.+.+..+|..+++++++++.+.+|||..|++.+++.++..+ .+
T Consensus        83 ~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903        83 LACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999866555666799999999999999999999999999999999999999999999997777666544 45


Q ss_pred             hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhc
Q 013655          200 SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEM  279 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (439)
                      +++||+|++..   +..+..    +                                                       
T Consensus       163 ~~lp~~p~~~~---~~~~~~----~-------------------------------------------------------  180 (368)
T TIGR00903       163 AALPALPFQAA---EGFGFK----D-------------------------------------------------------  180 (368)
T ss_pred             HHcCCCCCCCC---CCcchH----H-------------------------------------------------------
Confidence            66787754210   000000    0                                                       


Q ss_pred             cccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhh
Q 013655          280 KSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGD  359 (439)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  359 (439)
                                     ....++++++++.   ++...+.+++....+|+...|.|.+..+.          +++.. .+..
T Consensus       181 ---------------~~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~wlp~~L~~~----------g~s~~-~~~~  231 (368)
T TIGR00903       181 ---------------AVKEFGALAGRKD---LWIIGAILGFGVALFDNLAIWLEAALRPA----------GLEDI-AGDA  231 (368)
T ss_pred             ---------------HHHHHHHHHcChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCChH-HHHH
Confidence                           0003455665533   35555667777778888889999998542          24433 3334


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHhhhH---HH-HHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeecccc
Q 013655          360 VFITSFAEFPGLLLAAAMVDRLGRK---LS-MSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEV  435 (439)
Q Consensus       360 ~~~~~i~~~~g~~~~g~l~dr~grr---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~  435 (439)
                      ..+..+   .|.+..++++||..||   +. ......+.++..+.+....+.........+.+++....++..+++.+|.
T Consensus       232 ~~l~~~---~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  308 (368)
T TIGR00903       232 VALAIL---AGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKF  308 (368)
T ss_pred             HHHHHH---HHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence            444444   4444457888887543   33 2223444444444444444444444455566677777777788899999


Q ss_pred             ccCC
Q 013655          436 SHRS  439 (439)
Q Consensus       436 ~p~~  439 (439)
                      +|++
T Consensus       309 ~p~~  312 (368)
T TIGR00903       309 CDKE  312 (368)
T ss_pred             cchh
Confidence            9975

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=3.5e-29  Score=243.35  Aligned_cols=323  Identities=20%  Similarity=0.282  Sum_probs=218.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCchhhHH---HHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 013655           26 FQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWH---LSPNQESL---ITSVVFAGMLVGAYSWGIVSDNFGRRKGFLI   99 (439)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~g~---~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~   99 (439)
                      +++..+....+++++..++...+++..|.+.++++   .+..+.+.   +.++..++..++++++|+++||+|||+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            34455666677888999999999999999999984   45554444   4445555556999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcchHH--------HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Q 013655          100 TAIVTSAAGLLSAFAPNYY--------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAG  170 (439)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~  170 (439)
                      +.++++++.+++++++++.        .++++|+++|++.|.. +...+++.|++|+++||++.++...+...|..+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988763        5889999999999988 778899999999999999999998888888888877


Q ss_pred             HHHHhh--------cccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccch
Q 013655          171 IAWLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDW  242 (439)
Q Consensus       171 l~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (439)
                      +...+.        +.+|||..|++.+++.++...+...+||++++..        +    +.     ++          
T Consensus       179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~--------~----~~-----~~----------  231 (432)
T PRK10406        179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET--------R----AL-----KE----------  231 (432)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH--------h----hh-----cc----------
Confidence            655443        2579999999888877665544444555432100        0    00     00          


Q ss_pred             hhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHH
Q 013655          243 EHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNA  322 (439)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  322 (439)
                                                                        +   .+++++++++..+  .......+...
T Consensus       232 --------------------------------------------------~---~~~~~l~~~~~~~--~~~~~~~~~~~  256 (432)
T PRK10406        232 --------------------------------------------------A---GSLKGLWRNRRAF--IMVLGFTAAGS  256 (432)
T ss_pred             --------------------------------------------------c---ccHHHHHhhHHHH--HHHHHHHHHHH
Confidence                                                              0   0344455433222  22222223335


Q ss_pred             HhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 013655          323 FSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL  402 (439)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  402 (439)
                      ..+|....|.|.+..+.         .|.+....+....+..+...++.++.|+++||++||+.+..+.++.++....+.
T Consensus       257 ~~~~~~~~~lp~~l~~~---------~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~  327 (432)
T PRK10406        257 LCFYTFTTYMQKYLVNT---------AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPIL  327 (432)
T ss_pred             HHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence            56677777888776431         235554556666676777788889999999999999887766554433322121


Q ss_pred             --hc--cccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          403 --FQ--QPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       403 --~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                        ..  .+....+.+..+..++.+...+..+.+.+|.+|++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~  368 (432)
T PRK10406        328 SALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQ  368 (432)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence              11  12222222222222333333345667889999975

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.97  E-value=3.9e-29  Score=246.81  Aligned_cols=356  Identities=20%  Similarity=0.258  Sum_probs=239.7

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 013655           24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLW--------HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK   95 (439)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~   95 (439)
                      .+++.+..++..++.+..+++...+++..|.+.+++        +.+..+.+++.+.+.++..++++++|+++||+|||+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~   86 (479)
T PRK10077          7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (479)
T ss_pred             chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            455666777777888888888888888888888776        889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhc------------chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHH
Q 013655           96 GFLITAIVTSAAGLLSAFA------------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWT  162 (439)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~  162 (439)
                      +++++.++.+++.++.++.            +.++.++++|++.|++.|.. +...+++.|++|+++||+++++.+.+..
T Consensus        87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~  166 (479)
T PRK10077         87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII  166 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence            9999999988887776652            22567789999999999998 7788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh--------cccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCC
Q 013655          163 VGTILEAGIAWLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLP  234 (439)
Q Consensus       163 ~g~~i~~~l~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (439)
                      +|..+++.++..+.        +.+|||..|++.+++.++..+..+++||+|++...+++.+++++..++..+   ..  
T Consensus       167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~---~~--  241 (479)
T PRK10077        167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG---NT--  241 (479)
T ss_pred             HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcC---Ch--
Confidence            99999887766543        457899999988888777766677889998776555554444333332211   00  


Q ss_pred             CCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHH
Q 013655          235 SGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLL  314 (439)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  314 (439)
                            +.+...++                        ..+....+.           .    ..+.++.-.........
T Consensus       242 ------~~~~~~~~------------------------~~~~~~~~~-----------~----~~~~~~~~~~~~~~~~~  276 (479)
T PRK10077        242 ------LATQALQE------------------------IKHSLDHGR-----------K----TGGKLLMFGVGVIVIGV  276 (479)
T ss_pred             ------hHHHHHHH------------------------HHHHHHHhh-----------h----hhhhhcchhHHHHHHHH
Confidence                  00000000                        000000000           0    00011110000111111


Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 013655          315 WLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCC  394 (439)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  394 (439)
                      ....+.....++...++.|.+..+          .|.+...........++..+++.+++++++||+|||+.+..+.+++
T Consensus       277 ~~~~~~~~~~~~~~~~~~p~i~~~----------~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~  346 (479)
T PRK10077        277 MLSVFQQFVGINVVLYYAPEIFKT----------LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGM  346 (479)
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHH----------cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHH
Confidence            111222222333444555655433          2355444566666778888999999999999999999999999888


Q ss_pred             HHHHHHHhhc--ccc-c-hhhhHHHHHHhhhhh-eeeeeeeeccccccCC
Q 013655          395 CIFLVPLLFQ--QPK-G-LTTGLLFGARICITV-TFTVVYVYAPEVSHRS  439 (439)
Q Consensus       395 ~~~~~~~~~~--~~~-~-~~~~~~~~~g~~~~~-~~~~~~~~~~e~~p~~  439 (439)
                      +++.+.+...  .+. . ......++++++.+. ..|..+++++|.+|++
T Consensus       347 ~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  396 (479)
T PRK10077        347 AIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA  396 (479)
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh
Confidence            8877665432  121 1 222233344444433 3367789999999864

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.97  E-value=6.3e-30  Score=250.95  Aligned_cols=350  Identities=13%  Similarity=0.075  Sum_probs=236.7

Q ss_pred             HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 013655           19 VTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFL   98 (439)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~   98 (439)
                      .+....+..+.++..+.++++.....+...+...|.+.+++|+|..+.|++.+++.+++.+++++.|+++||+|||+++.
T Consensus        19 ~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~   98 (467)
T PRK09556         19 QRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLP   98 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHH
Confidence            33345566777888888889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhh-----cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013655           99 ITAIVTSAAGLLSAF-----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA  172 (439)
Q Consensus        99 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~  172 (439)
                      .+.++++++.++.++     +++++.+++.|++.|++.+.. +...+++.+++|+++||+++|+...+.++|.++++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~  178 (467)
T PRK09556         99 FLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA  178 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence            888887777665554     589999999999999999888 77778999999999999999999999999999999998


Q ss_pred             HHhhccc---chhHHHHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhh
Q 013655          173 WLVMPRL---GWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQN  248 (439)
Q Consensus       173 ~~l~~~~---g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (439)
                      .++.+..   +|+..|.+.+++.++..++ +++.+++|+.....  .++  +.   . .   +..             .+
T Consensus       179 ~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~--~~~--~~---~-~---~~~-------------~~  234 (467)
T PRK09556        179 LWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG--KAE--EI---F-G---EPI-------------SE  234 (467)
T ss_pred             HHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC--Chh--hc---c-c---Ccc-------------ch
Confidence            8776643   6999888877776655444 44445554211000  000  00   0 0   000             00


Q ss_pred             ccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHH-HHhhChHHHHHHHHHHHHHHHHHHhhhH
Q 013655          249 KSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL-LILLSPELIKSTLLLWLVFFGNAFSYYG  327 (439)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~  327 (439)
                                               +++.+.+++          .+....+ +..++++   .++..++..++....+++
T Consensus       235 -------------------------~~~~~~~~~----------~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~  276 (467)
T PRK09556        235 -------------------------EDKETESTD----------MTKWQIFVEYVLKNP---VIWLLCFANIFLYIVRIG  276 (467)
T ss_pred             -------------------------hhhcccccc----------CcHHHHHHHHHHcCh---HHHHHHHHHHHHHHHHHH
Confidence                                     000000000          0000011 1233333   234444555555556667


Q ss_pred             HHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--Hhhcc
Q 013655          328 LVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVP--LLFQQ  405 (439)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~--~~~~~  405 (439)
                      ...|.|.|..+.         .|.+...++...+...++.++|++++|+++||++||+.+.....+..+....  +...+
T Consensus       277 ~~~~~p~yl~~~---------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~  347 (467)
T PRK09556        277 IDNWSPVYAFQE---------LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHAT  347 (467)
T ss_pred             HHHHHHHHHHHc---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcC
Confidence            778888777432         3466666677778888899999999999999999888766554443333222  22222


Q ss_pred             ccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          406 PKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       406 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      +.+...+..++.|++..+..........|.+|++
T Consensus       348 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~  381 (467)
T PRK09556        348 SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKK  381 (467)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchh
Confidence            3333334455555443332222234556887763

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.97  E-value=9.9e-29  Score=243.62  Aligned_cols=358  Identities=24%  Similarity=0.288  Sum_probs=234.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--------chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655           33 YAGMGWISEAMEMMLLSFVGPAVQSLWHLS--------PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT  104 (439)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  104 (439)
                      ++.++.+...+.........+.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||++++++.++.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~  111 (481)
T TIGR00879        32 IAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLF  111 (481)
T ss_pred             HHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHH
Confidence            333444555666667777778887777766        899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc---chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH---HHhhc
Q 013655          105 SAAGLLSAFA---PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA---WLVMP  177 (439)
Q Consensus       105 ~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~---~~l~~  177 (439)
                      +++.++..+.   .+++.+++.|++.|++.+.. +....++.|++|+++|++++++.+.+..+|..+++.++   ....+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  191 (481)
T TIGR00879       112 VIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN  191 (481)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9888887554   34568999999999999988 66778999999999999999999999999999999999   66667


Q ss_pred             ccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCC
Q 013655          178 RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSN  257 (439)
Q Consensus       178 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (439)
                      ..+||..|++.++..++..+..+++||+|++...+++.++..+..++..   +.+.+    ..+..+..+.         
T Consensus       192 ~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~---------  255 (481)
T TIGR00879       192 TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLR---GTSGE----DKELLDELEL---------  255 (481)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHh---CCCCC----cHHHHHHHHH---------
Confidence            7899999999777777666667778988765444433333222221111   00000    0000000000         


Q ss_pred             CCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 013655          258 EDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNN  337 (439)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (439)
                                 .  +...+.+.          +..+..+......+++...+.++..++.++...........+.+.+..
T Consensus       256 -----------~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (481)
T TIGR00879       256 -----------I--DIKRSIEK----------RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE  312 (481)
T ss_pred             -----------H--HHHHHHHH----------hhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH
Confidence                       0  00000000          000011112333332222333344444444444434444455555543


Q ss_pred             CCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---cc-c------c
Q 013655          338 GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF---QQ-P------K  407 (439)
Q Consensus       338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~~-~------~  407 (439)
                      +          .|.+............++.++++++.|+++||+|||+.+..+.++++++.+.+.+   .. +      .
T Consensus       313 ~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (481)
T TIGR00879       313 N----------AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG  382 (481)
T ss_pred             H----------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence            3          3366656677888888899999999999999999999988887777776665541   11 1      1


Q ss_pred             chhhhHHHHHHhhh-hheeeeeeeeccccccCC
Q 013655          408 GLTTGLLFGARICI-TVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       408 ~~~~~~~~~~g~~~-~~~~~~~~~~~~e~~p~~  439 (439)
                      ........+.+.+. .+..+....++.|.+|++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  415 (481)
T TIGR00879       383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS  415 (481)
T ss_pred             HHHHHHHHHHHHHHHccccCeehhhhhccCChH
Confidence            22222222333333 233467777889998863

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=1.6e-28  Score=235.81  Aligned_cols=315  Identities=15%  Similarity=0.099  Sum_probs=220.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHH
Q 013655           28 LCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAA  107 (439)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~  107 (439)
                      |..++.+.+..+..........+..|.+.+++|.|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   87 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS   87 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            43344444433443344445566789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 013655          108 GLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG  186 (439)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~  186 (439)
                      .+.+.++++++.+++.|++.|++.+.. +...+++.+++|+++|++++|+...+.++|..++|++++.+.+.+|||..|+
T Consensus        88 ~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~  167 (390)
T PRK03545         88 HVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFL  167 (390)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHH
Confidence            999999999999999999999998877 6677899999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhh
Q 013655          187 LSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKE  265 (439)
Q Consensus       187 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (439)
                      +.+++.++..+. ...+|+.++     +++++                                                
T Consensus       168 ~~~~~~~l~~~~~~~~~~~~~~-----~~~~~------------------------------------------------  194 (390)
T PRK03545        168 AIGGGALITLLLLIKLLPLLPS-----EHSGS------------------------------------------------  194 (390)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCC-----CCcch------------------------------------------------
Confidence            988877665444 333454321     00000                                                


Q ss_pred             hcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccccc
Q 013655          266 MARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSN  345 (439)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (439)
                                                    ....++.++++..+......   ++....++....+.+.+..+       
T Consensus       195 ------------------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~-------  234 (390)
T PRK03545        195 ------------------------------LKSLPLLFRRPALVSLYLLT---VVVVTAHFTAYSYIEPFVQQ-------  234 (390)
T ss_pred             ------------------------------HHHHHHHHhCcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------
Confidence                                          00222334333332222221   11122222222333333322       


Q ss_pred             ccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHhhccccchhhhHHHHHHhhhhhe
Q 013655          346 ELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV-PLLFQQPKGLTTGLLFGARICITVT  424 (439)
Q Consensus       346 ~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~  424 (439)
                        +.|.+....+...+..+++.++++++.|++.||++||...... .+..+... .....++.+...+..++.|++....
T Consensus       235 --~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~  311 (390)
T PRK03545        235 --VAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAI-ALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCI  311 (390)
T ss_pred             --hcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcc
Confidence              1346666677788888899999999999999999988754443 33333333 3333444445555666777776555


Q ss_pred             eeeeeeeccccccC
Q 013655          425 FTVVYVYAPEVSHR  438 (439)
Q Consensus       425 ~~~~~~~~~e~~p~  438 (439)
                      .+.....+.|..|+
T Consensus       312 ~~~~~~~~~~~~~~  325 (390)
T PRK03545        312 GLAMQVKVLKLAPD  325 (390)
T ss_pred             hHHHHHHHHHhCCC
Confidence            55555555565553

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.97  E-value=2.8e-28  Score=239.20  Aligned_cols=338  Identities=13%  Similarity=0.085  Sum_probs=226.3

Q ss_pred             HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 013655           19 VTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFL   98 (439)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~   98 (439)
                      ++...++.+++.+......++........+.+..|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~  105 (476)
T PLN00028         26 RLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSA  105 (476)
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            33344555566666666777777777778888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh--
Q 013655           99 ITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM--  176 (439)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~--  176 (439)
                      .+.++++++.++.+++++++.++++|++.|++.+.......++.+++|+++||+++|+.+.+.++|..+++.+.+.+.  
T Consensus       106 ~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~  185 (476)
T PLN00028        106 FLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPL  185 (476)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988766444567899999999999999998777777777766655432  


Q ss_pred             --c-----ccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhc
Q 013655          177 --P-----RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNK  249 (439)
Q Consensus       177 --~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (439)
                        +     ..|||..|++.+++.++..+..++++++++    +++.+       +..+. .+.                 
T Consensus       186 ~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p----~~~~~-------~~~~~-~~~-----------------  236 (476)
T PLN00028        186 IKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLP----DGNYR-------ELKKS-GTM-----------------  236 (476)
T ss_pred             HHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCC----CCchh-------hHHhc-Ccc-----------------
Confidence              2     258999999988887776655555543321    00000       00000 000                 


Q ss_pred             cccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHH
Q 013655          250 SLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLV  329 (439)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (439)
                                                    +  +         .+....+++.++.+.   ++..++.++......+...
T Consensus       237 ------------------------------~--~---------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  272 (476)
T PLN00028        237 ------------------------------P--K---------DSFSKVLRYGVTNYR---TWILALTYGYSFGVELTMD  272 (476)
T ss_pred             ------------------------------c--c---------ccHHHHHHHHHcCch---hHHHHHHHHHHHHHHHHHH
Confidence                                          0  0         000012333333322   2233333333333334445


Q ss_pred             HHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHh
Q 013655          330 LLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK-------LSMSSMFFCCCIFLVPLL  402 (439)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr-------~~~~~~~~~~~~~~~~~~  402 (439)
                      .+.|.+..+         +.|.+...++...++..++.+++++++|+++||++||       .......++.++..+.+.
T Consensus       273 ~~~p~~l~~---------~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~  343 (476)
T PLN00028        273 NIIAEYFYD---------RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG  343 (476)
T ss_pred             hHHHHHHHH---------hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc
Confidence            556655532         1346766778888889999999999999999999875       223333333333333333


Q ss_pred             hccccchhhhHHHHHHhhhhheeeeeeeeccccccC
Q 013655          403 FQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       403 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      ..++.+...+.+++.+++.+...+..+.+.+++.|.
T Consensus       344 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  379 (476)
T PLN00028        344 RANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRR  379 (476)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChh
Confidence            333433344445555665555556666666666553

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=3.2e-28  Score=233.86  Aligned_cols=318  Identities=10%  Similarity=0.108  Sum_probs=238.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHH
Q 013655           27 QLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA  106 (439)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  106 (439)
                      +++..+..++.++..+......+...|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i   84 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL   84 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45556667777888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhHH
Q 013655          107 AGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-RLGWRWL  184 (439)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-~~g~~~~  184 (439)
                      +.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|+++++..+.+..+|..++|.+.+.+.+ ..|||..
T Consensus        85 ~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~  164 (394)
T PRK03699         85 AVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWV  164 (394)
T ss_pred             HHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            9999999999999999999999998877 6677888999999999999999999999999999999888764 5799999


Q ss_pred             HHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchh
Q 013655          185 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK  264 (439)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (439)
                      |.+.+++.++..++.+. .+.|+.   +++.+             +++                 +              
T Consensus       165 f~~~~~~~~~~~~~~~~-~~~p~~---~~~~~-------------~~~-----------------~--------------  196 (394)
T PRK03699        165 YACIGLVYVAIFILTLF-SEFPAL---GKHAP-------------KAD-----------------K--------------  196 (394)
T ss_pred             HHHHHHHHHHHHHHHHh-cCCccc---cccCc-------------ccc-----------------C--------------
Confidence            99888776665444332 222110   00000             000                 0              


Q ss_pred             hhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccc
Q 013655          265 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVS  344 (439)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (439)
                                   +                   ..+..++    +.++...+..++....++....|.|.+..+.     
T Consensus       197 -------------~-------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----  235 (394)
T PRK03699        197 -------------P-------------------VAKEKWG----IGVLFLAIAALLYILAQLTFISWVPEYAQKK-----  235 (394)
T ss_pred             -------------c-------------------cccccCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence                         0                   0000001    2223333444444455566677788777432     


Q ss_pred             cccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhhe
Q 013655          345 NELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVT  424 (439)
Q Consensus       345 ~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  424 (439)
                          .|.+....+...+...++..+|+++.|+++||++||+.+.....+.++....+...++.....+..++.|++.+..
T Consensus       236 ----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  311 (394)
T PRK03699        236 ----FGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAI  311 (394)
T ss_pred             ----cCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence                3467777778888888899999999999999999999888777776666665555555555555667777777777


Q ss_pred             eeeeeeecccccc
Q 013655          425 FTVVYVYAPEVSH  437 (439)
Q Consensus       425 ~~~~~~~~~e~~p  437 (439)
                      ++...++..|..|
T Consensus       312 ~~~~~~~~~~~~~  324 (394)
T PRK03699        312 YTTIITLGSQQTK  324 (394)
T ss_pred             HHHHHHHHHHHcc
Confidence            7766666666554

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.97  E-value=2e-28  Score=238.07  Aligned_cols=182  Identities=20%  Similarity=0.270  Sum_probs=161.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655           25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT  104 (439)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  104 (439)
                      ++++..+....+.++...+.....+...|.+.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            45556666677777777777778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655          105 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW  183 (439)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~  183 (439)
                      +++.++.+++++++.+++.|++.|++.|.. +....++.+++|+++|++++++.+.+.++|..+++.+.+++.+.+|||.
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~  178 (434)
T PRK11663         99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY  178 (434)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            999999999999999999999999998887 7777899999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHH-HHHhcccCCc
Q 013655          184 LLGLSAFPSSLLL-LLYSVTPESP  206 (439)
Q Consensus       184 ~~~~~~~~~~~~~-~~~~~~~~~~  206 (439)
                      .|++.+++.++.. +..++++|+|
T Consensus       179 ~f~~~~i~~~~~~~~~~~~~~~~p  202 (434)
T PRK11663        179 GMMIAGIIAIVVGLFLCWRLRDKP  202 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCH
Confidence            9998887665543 3445566654

>PRK09952 shikimate transporter; Provisional

Probab=99.97  E-value=6.8e-28  Score=234.40  Aligned_cols=327  Identities=17%  Similarity=0.199  Sum_probs=219.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhc--CCCchhhHHHH-----HHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 013655           27 QLCVLAYAGMGWISEAMEMMLLSFVGPA-VQSLW--HLSPNQESLIT-----SVVFAGMLVGAYSWGIVSDNFGRRKGFL   98 (439)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~g~~~-----~~~~~~~~~~~~~~g~l~dr~G~r~~~~   98 (439)
                      +++.+....+++++.+++....+++.|. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~   98 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence            3456667777889999999998888775 45555  67766 45543     3455667889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcchHH--------HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Q 013655           99 ITAIVTSAAGLLSAFAPNYY--------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEA  169 (439)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~  169 (439)
                      .+.++++++.+++++++++.        .++++|+++|++.|.. +....++.|++|+++||+..+....+..+|..++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~  178 (438)
T PRK09952         99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST  178 (438)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999986        5889999999999998 77778999999999999999999999999999988


Q ss_pred             HHHHHhh--------cccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccc
Q 013655          170 GIAWLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSD  241 (439)
Q Consensus       170 ~l~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (439)
                      .+..++.        +.+|||..|++.+++.++...+....||+|++...+.+.              ++.         
T Consensus       179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~--------------~~~---------  235 (438)
T PRK09952        179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQ--------------AAA---------  235 (438)
T ss_pred             HHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhc--------------ccc---------
Confidence            7776654        357999999988877655444444455554321100000              000         


Q ss_pred             hhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHH
Q 013655          242 WEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGN  321 (439)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  321 (439)
                                                            +++.             ...+.+++++..  ........++.
T Consensus       236 --------------------------------------~~~~-------------~~~~~l~~~~~~--~~~~~~~~~~~  262 (438)
T PRK09952        236 --------------------------------------KKRI-------------PVIEALLRHPGA--FLKIIALRLCE  262 (438)
T ss_pred             --------------------------------------cccC-------------CHHHHHHHchHH--HHHHHHHHHHH
Confidence                                                  0000             011112222211  22222233444


Q ss_pred             HHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 013655          322 AFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPL  401 (439)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  401 (439)
                      ...+|....|.+.+..+.         .|.+.........+.++..+++.++.|+++||+|||+.+..+.++.+++.+.+
T Consensus       263 ~~~~~~~~~~~~~y~~~~---------~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~  333 (438)
T PRK09952        263 LLTMYIVTAFALNYSTQN---------LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPF  333 (438)
T ss_pred             HHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            555666666776665321         22333322334445567778888999999999999998887766655543322


Q ss_pred             hh---ccc-cchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          402 LF---QQP-KGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       402 ~~---~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      ..   ..+ .+......++.+++.+...+..+++.+|.+|++
T Consensus       334 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~  375 (438)
T PRK09952        334 FMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGAS  375 (438)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcc
Confidence            22   122 222233344556666666777888999999974

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4.4e-28  Score=229.72  Aligned_cols=330  Identities=24%  Similarity=0.360  Sum_probs=237.0

Q ss_pred             hhhcC--CCchh----hHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHH
Q 013655           56 QSLWH--LSPNQ----ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF---APNYYLLLFFRCL  126 (439)
Q Consensus        56 ~~~~~--~s~~~----~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l  126 (439)
                      .+.+|  .+..+    .+.+.+++.+|.++|++..|+++||+|||..+.++.++..++.+++.+   .+++.+++++|++
T Consensus        46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i  125 (485)
T KOG0569|consen   46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI  125 (485)
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            44566  34333    366788999999999999999999999999999988887777766654   4789999999999


Q ss_pred             HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH-Hhh-cccchhHHHHHhHHHHHHHHHHHhccc
Q 013655          127 VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW-LVM-PRLGWRWLLGLSAFPSSLLLLLYSVTP  203 (439)
Q Consensus       127 ~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~-~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~  203 (439)
                      .|+..|.. ...+-++.|..|.+.||....+.+.+..+|.+++..++. .+. +.-.|++.+....+++++.++...++|
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~P  205 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLP  205 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999998 677789999999999999999999999999999977653 333 344599999999999999999999999


Q ss_pred             CCchhhhh-ccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhcccc
Q 013655          204 ESPRYLCL-KGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSE  282 (439)
Q Consensus       204 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (439)
                      |+|++... +++.+++++.++.++..++.+       ++.++..++.                        ++++..++ 
T Consensus       206 ESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~-------~~~e~~~~e~------------------------~~~~~~~~-  253 (485)
T KOG0569|consen  206 ESPKYLLIKKGDEEEARKALKFYRGKEDVE-------AEIEEMLREI------------------------EEEELEKK-  253 (485)
T ss_pred             CCcchHHHHcCCHHHHHHHHHHHhCCCcch-------hHHHHHHHHH------------------------HHhccccc-
Confidence            99999977 788888998888887532211       0000000000                        00000000 


Q ss_pred             ccchhhccccchhHHHHHHhhCh-HHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhH
Q 013655          283 DSTSTLANSNMGGITALLILLSP-ELIKSTLLLWLVFFGNAF-SYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDV  360 (439)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  360 (439)
                                  +..++++++++ ..++...+.+.+.+++.+ ..+....+...+..+          .|.+.+.+....
T Consensus       254 ------------~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~----------aG~~~~~a~~an  311 (485)
T KOG0569|consen  254 ------------KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT----------AGFTPEEAQYAN  311 (485)
T ss_pred             ------------cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH----------cCCCHHHHHHHH
Confidence                        11267777764 444444444444443332 223333333333332          458888888888


Q ss_pred             HHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc----cc--cc---hhhhHHHHHHhhh-hheeeeeee
Q 013655          361 FITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ----QP--KG---LTTGLLFGARICI-TVTFTVVYV  430 (439)
Q Consensus       361 ~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----~~--~~---~~~~~~~~~g~~~-~~~~~~~~~  430 (439)
                      ...++..++.++++.+++||+|||+.++.+..++.+..+.+...    ..  .|   ..++..+++.+++ .+..|+.+.
T Consensus       312 ~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~f  391 (485)
T KOG0569|consen  312 LGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWF  391 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHH
Confidence            89999999999999999999999999999999998887766531    11  11   1223333444333 344799999


Q ss_pred             eccccccCC
Q 013655          431 YAPEVSHRS  439 (439)
Q Consensus       431 ~~~e~~p~~  439 (439)
                      +.+|++|++
T Consensus       392 i~aELf~~~  400 (485)
T KOG0569|consen  392 IGAELFPQS  400 (485)
T ss_pred             HHHHhCCcc
Confidence            999999974

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.97  E-value=1.5e-27  Score=228.72  Aligned_cols=316  Identities=15%  Similarity=0.129  Sum_probs=223.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHH
Q 013655           27 QLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA  106 (439)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  106 (439)
                      .|..+..+....+......+.....+|.+.+++|+++.+.++..+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            45544444444444545555666678899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 013655          107 AGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLL  185 (439)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~  185 (439)
                      +.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+.++|..++|++++++.+.+|||..|
T Consensus        98 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f  177 (394)
T PRK10213         98 SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVF  177 (394)
T ss_pred             HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence            9999999999999999999999999988 777788999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHH-hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchh
Q 013655          186 GLSAFPSSLLLLLY-SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK  264 (439)
Q Consensus       186 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (439)
                      ++.+++.++..+.. ...||.++.     +. +..                                             
T Consensus       178 ~~~~~l~~~~~l~~~~~~p~~~~~-----~~-~~~---------------------------------------------  206 (394)
T PRK10213        178 NAAAVMGVLCIFWIIKSLPSLPGE-----PS-HQK---------------------------------------------  206 (394)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCcc-----cc-cch---------------------------------------------
Confidence            98877666544332 234443210     00 000                                             


Q ss_pred             hhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHhhcCCCccc
Q 013655          265 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLL-TTELNNGQNKCV  343 (439)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  343 (439)
                                                      .+....++++..+......+..+   ..++....+ .|.+..+     
T Consensus       207 --------------------------------~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~-----  246 (394)
T PRK10213        207 --------------------------------QNTFRLLQRPGVMAGMIAIFMSF---AGQFAFFTYIRPVYMNL-----  246 (394)
T ss_pred             --------------------------------hHHHHHhcCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh-----
Confidence                                            01223333333333222222222   222222222 3444422     


Q ss_pred             ccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhh
Q 013655          344 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITV  423 (439)
Q Consensus       344 ~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  423 (439)
                           .|.+.+..+......+++.+++.++.+++.||.+++.......+..+..+++....++.+......++.|++.+.
T Consensus       247 -----~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~  321 (394)
T PRK10213        247 -----AGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFAL  321 (394)
T ss_pred             -----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence                 346666667888888899999999999999996544434433333333334333444555555667777888777


Q ss_pred             eeeeeeeeccccccC
Q 013655          424 TFTVVYVYAPEVSHR  438 (439)
Q Consensus       424 ~~~~~~~~~~e~~p~  438 (439)
                      ..+...+++.+..|+
T Consensus       322 ~~~~~~~~~~~~~~~  336 (394)
T PRK10213        322 VPVGWSTWITRSLAD  336 (394)
T ss_pred             hhHHHHHHHHHHCcc
Confidence            777666666666553

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=2.7e-27  Score=230.20  Aligned_cols=323  Identities=19%  Similarity=0.247  Sum_probs=215.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHH-HHH-----HHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 013655           28 LCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLIT-SVV-----FAGMLVGAYSWGIVSDNFGRRKGFLITA  101 (439)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~-~~~-----~~~~~~~~~~~g~l~dr~G~r~~~~~~~  101 (439)
                      ++.....+++.+..+++....++..|.+.++++.+..+.+.+. +..     .++..+++++.|+++||+|||++++.+.
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   93 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTL   93 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHH
Confidence            4456677889999999999999999999999999887765433 222     2233468899999999999999999999


Q ss_pred             HHHHHHHHHHhhcchHH--------HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013655          102 IVTSAAGLLSAFAPNYY--------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA  172 (439)
Q Consensus       102 ~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~  172 (439)
                      ++.+++.++++++++++        .++++|++.|++.+.. +....++.|++|+++|++++++...+..+|..+++.++
T Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g  173 (434)
T PRK15075         94 SIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLG  173 (434)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999877        4689999999999988 66778999999999999999999998888888888777


Q ss_pred             HHh--------hcccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhh
Q 013655          173 WLV--------MPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH  244 (439)
Q Consensus       173 ~~l--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (439)
                      +.+        .+.+|||..|++..+...+........||++++          .   ++.    ++. +          
T Consensus       174 ~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~----------~---~~~----~~~-~----------  225 (434)
T PRK15075        174 YLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEF----------L---ARK----HRP-S----------  225 (434)
T ss_pred             HHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHH----------H---Hhh----hcc-c----------
Confidence            765        256899999987544322221111111221000          0   000    000 0          


Q ss_pred             hhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHh
Q 013655          245 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFS  324 (439)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                                                           .          +   ..++.+.++  ++.....+...+.....
T Consensus       226 -------------------------------------~----------~---~~~~~~~~~--~~~~~~~~~~~~~~~~~  253 (434)
T PRK15075        226 -------------------------------------M----------R---EIFRSLAAN--WRIVLAGMLMVAMTTVS  253 (434)
T ss_pred             -------------------------------------c----------c---cHHHHHHHh--HHHHHHHHHHHHHHHHH
Confidence                                                 0          0   011222211  12222223333444555


Q ss_pred             hhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HH-h
Q 013655          325 YYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV-PL-L  402 (439)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~-~~-~  402 (439)
                      ++....|.|.+..+.         .|.+............++.+++.++.|+++||+|||+.+..+..+..+..+ .+ .
T Consensus       254 ~~~~~~~~p~~l~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~  324 (434)
T PRK15075        254 FYLITVYTPTFGKTV---------LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW  324 (434)
T ss_pred             HHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            667777788777431         235555566777778888999999999999999999987776554433221 11 1


Q ss_pred             h-ccc-cchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          403 F-QQP-KGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       403 ~-~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      . ..+ ........++.+++.+...+..+.+..|.+|++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~  363 (434)
T PRK15075        325 LVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAE  363 (434)
T ss_pred             HHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCC
Confidence            1 112 112222234445555555565667788998874

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.96  E-value=2e-27  Score=226.43  Aligned_cols=316  Identities=14%  Similarity=0.060  Sum_probs=222.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Q 013655           25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQS-LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV  103 (439)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~  103 (439)
                      +..++.+.+..+.++..+..+..++++.+.+.+ ++|+|.++.+++.+++.+++.+++++.|++.||+|.|+++.++.++
T Consensus        30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll  109 (462)
T PRK15034         30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI  109 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            445567888888888899999999999888876 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc-----chHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh--
Q 013655          104 TSAAGLLSAFA-----PNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM--  176 (439)
Q Consensus       104 ~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~--  176 (439)
                      +++..++.+++     ++++.+++.|++.|++.+..++....+++++|+++||+++|+.....++|..+++++...+.  
T Consensus       110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~  189 (462)
T PRK15034        110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV  189 (462)
T ss_pred             HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999988876     89999999999999984433777889999999999999999997667777766655554422  


Q ss_pred             ---c-------------ccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCcc
Q 013655          177 ---P-------------RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVS  240 (439)
Q Consensus       177 ---~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (439)
                         +             ..+||.+.++..++.++..++.++..++++.    .+. .                       
T Consensus       190 ~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~----~~~-~-----------------------  241 (462)
T PRK15034        190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS----SRA-S-----------------------  241 (462)
T ss_pred             HHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----ccc-C-----------------------
Confidence               2             3347777777777666665554443322110    000 0                       


Q ss_pred             chhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHH
Q 013655          241 DWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFG  320 (439)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  320 (439)
                                                                             .......+|+   +.+|..++.+++
T Consensus       242 -------------------------------------------------------~~~~~~vlk~---~~~Wllslly~~  263 (462)
T PRK15034        242 -------------------------------------------------------IADQLPVLQR---LHLWLLSLLYLA  263 (462)
T ss_pred             -------------------------------------------------------HHHHHHHhCC---CchhHHHHHHHH
Confidence                                                                   0022223333   234566666666


Q ss_pred             HHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 013655          321 NAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVP  400 (439)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  400 (439)
                      ....|.+...+.|.+..+.           ++.........+..+...++++++|+++||+|+++++..+++.++++.+.
T Consensus       264 tFG~fvg~s~~lp~~~~~~-----------~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~  332 (462)
T PRK15034        264 TFGSFIGFSAGFAMLAKTQ-----------FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSAL  332 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----------cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            6666666676777776331           32222233344556778899999999999999999998888777666533


Q ss_pred             Hh-hcc-----ccchhhhHHHHHHhhhhheeeeeeeecccccc
Q 013655          401 LL-FQQ-----PKGLTTGLLFGARICITVTFTVVYVYAPEVSH  437 (439)
Q Consensus       401 ~~-~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p  437 (439)
                      +. ..+     +.+...+..+...++.+......+-+++++||
T Consensus       333 ~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~  375 (462)
T PRK15034        333 LFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFR  375 (462)
T ss_pred             HHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHh
Confidence            22 222     12333333333344455555566666666666

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.96  E-value=2.8e-28  Score=232.83  Aligned_cols=306  Identities=17%  Similarity=0.143  Sum_probs=219.5

Q ss_pred             HHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 013655           44 EMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFF  123 (439)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (439)
                      ..+..+++.|++.+++|+|..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (377)
T TIGR00890        18 YVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLT   97 (377)
T ss_pred             HHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH-hc
Q 013655          124 RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY-SV  201 (439)
Q Consensus       124 ~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~  201 (439)
                      |++.|++.+.. +.....+.+++| ++|+++.++...+.++|..+++++.+.+.+..|||..|++.+++.++..+.. ++
T Consensus        98 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890        98 YGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             HHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998876 555667778776 6799999999999999999888888888888899999999888777765554 34


Q ss_pred             ccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccc
Q 013655          202 TPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKS  281 (439)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (439)
                      ++++++... +++                ++                                    .+    +      
T Consensus       177 ~~~~~~~~~-~~~----------------~~------------------------------------~~----~------  193 (377)
T TIGR00890       177 IGYPPGQLI-KTN----------------IE------------------------------------VS----V------  193 (377)
T ss_pred             eecCchhcc-ccC----------------cc------------------------------------cc----h------
Confidence            443321000 000                00                                    00    0      


Q ss_pred             cccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHH
Q 013655          282 EDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVF  361 (439)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  361 (439)
                                   +....++.++++..+......   ++..........+.+.+..+          .+.+....+...+
T Consensus       194 -------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~  247 (377)
T TIGR00890       194 -------------KDYTVWEMLRTPQFWVLYLSF---FLNAVSGLLLIGLYKPYGQS----------LGLSDGFLVLAVS  247 (377)
T ss_pred             -------------hhhhHHHHHcCccHHHHHHHH---HHHhHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHH
Confidence                         000223334333333222222   22222222222223333322          2244444567778


Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccc--hhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          362 ITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKG--LTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       362 ~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      ...++.++++++.|++.||+|||+.+..+..+.+++.+.+.+.++..  ......++.+++.+...+....+++|.+|++
T Consensus       248 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~  327 (377)
T TIGR00890       248 ISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPA  327 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhh
Confidence            88899999999999999999999999888888888777665544322  2223445667777777777777888888764

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.96  E-value=3.6e-27  Score=232.83  Aligned_cols=367  Identities=14%  Similarity=0.091  Sum_probs=246.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHH
Q 013655           27 QLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA  106 (439)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  106 (439)
                      +|..+..++++.+....+..+.+..+|.+.+++|.+..+.+|+.+.+.++..++.+++|+++||+|||++++.+.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            45677788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 013655          107 AGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL  184 (439)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~  184 (439)
                      +.++++++++++.++++|+++|++.+.. +.....+.+.+ |+++|++++|+......+|..+||.+++++.+++|||+.
T Consensus        84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~  163 (495)
T PRK14995         84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV  163 (495)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence            9999999999999999999999998887 55666666665 678999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHH------HHHHHhCCCCCCCCCccchhhhhhhccccCCCCC
Q 013655          185 LGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLE------KIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSN  257 (439)
Q Consensus       185 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (439)
                      |++...+.++..++ .+++|+++....  ++.+.......      .........  .... ........- .       
T Consensus       164 f~i~~~~~~~~~~l~~~~l~~~~~~~~--~~~d~~g~~~~~~~~~~l~~~~~~~~--~~~~-~~~~~~~~~-~-------  230 (495)
T PRK14995        164 FLINVPIVLVVMGLTARYVPRQAGRRD--QPLNLGHALMLIVAILLLVYSAKTAL--KGFL-SLWVTSLTL-L-------  230 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCChHhHHHHHHHHHHHHHHHHhcc--ccCC-chHHHHHHH-H-------
Confidence            99887666655443 455676542211  11111000000      000000000  0000 000000000 0       


Q ss_pred             CCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 013655          258 EDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNN  337 (439)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (439)
                          ...-....  -...|...++             +..+ .++++++...   ...+..+.....+++...+.|.+.+
T Consensus       231 ----~~~~~l~~--f~~~e~~~~~-------------p~~~-~~lf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lq  287 (495)
T PRK14995        231 ----TGALLLGL--FIRTQLAASR-------------PMID-MRLFTHRIIL---SGVVMAMTAMITLVGFELLMAQELQ  287 (495)
T ss_pred             ----HHHHHHHH--HHHHHhcCCC-------------CCcC-HHHhCCcccH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                00000000  0000000000             0001 1244433322   2222233333334444455555543


Q ss_pred             CCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc---cccchhhhHH
Q 013655          338 GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ---QPKGLTTGLL  414 (439)
Q Consensus       338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  414 (439)
                      ..         .|.+...++.......++..++.++.|++.||+|+|+.+..+.++.+++.+++...   .+.+......
T Consensus       288 ~v---------~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  358 (495)
T PRK14995        288 FV---------HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLM  358 (495)
T ss_pred             HH---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            21         34677777888888899999999999999999999998888888777766555432   2333345567


Q ss_pred             HHHHhhhhheeeeeeeeccccccC
Q 013655          415 FGARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       415 ~~~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      ++.|++.+...+.....+.+..|+
T Consensus       359 ~l~G~g~g~~~~~~~~~~~~~~~~  382 (495)
T PRK14995        359 ALLGFSAASALLASTSAIMAAAPP  382 (495)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCH
Confidence            777888887777666666666664

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.96  E-value=7e-28  Score=231.50  Aligned_cols=331  Identities=17%  Similarity=0.154  Sum_probs=222.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHH
Q 013655           39 ISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYY  118 (439)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~  118 (439)
                      +....+....+...|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++..+.+++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~   83 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV   83 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHH
Confidence            45566667788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHH
Q 013655          119 LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL  197 (439)
Q Consensus       119 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~  197 (439)
                      .+++.|++.|++.+.. +....++.|++|+++|++++++.+...++|..+++.+++++.+..+||..|++.+++.++..+
T Consensus        84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  163 (399)
T TIGR00893        84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGV  163 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            9999999999999888 777799999999999999999999999999999999999999999999999988877776655


Q ss_pred             HH-hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHh
Q 013655          198 LY-SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEA  276 (439)
Q Consensus       198 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (439)
                      .. +..|++++...  ...++.++...+  . ...                           +         .    +++
T Consensus       164 ~~~~~~~~~~~~~~--~~~~~~~~~~~~--~-~~~---------------------------~---------~----~~~  198 (399)
T TIGR00893       164 LWLKFIPDPPQKAK--WLTEEEKYIVVG--G-LLA---------------------------E---------Q----QGK  198 (399)
T ss_pred             HhhheecCCCCccc--cCCHHHHhhcch--h-hcc---------------------------c---------c----ccc
Confidence            43 44555432110  000000000000  0 000                           0         0    000


Q ss_pred             hhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCc
Q 013655          277 KEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN  356 (439)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  356 (439)
                      ++.             +..+...++.++++..   +...+..+.....+.....+.|.+..+.         .+.+....
T Consensus       199 ~~~-------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~  253 (399)
T TIGR00893       199 GPS-------------TPKKYQIKELLKDRRV---WGLALGQFLVNIGLGFFLTWFPTYLVQE---------RGLSILEA  253 (399)
T ss_pred             ccc-------------CCCccchHHHhcCHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHH---------hcccHHHh
Confidence            000             0000133444444332   3333333444444445555566555331         23555566


Q ss_pred             hhhHHHHhhhhhhHHHHHHHHHHHhhhHH--HHHHHHH--HHH--HHHHHHhhc-cccchhhhHHHHHHhhhhheeeeee
Q 013655          357 YGDVFITSFAEFPGLLLAAAMVDRLGRKL--SMSSMFF--CCC--IFLVPLLFQ-QPKGLTTGLLFGARICITVTFTVVY  429 (439)
Q Consensus       357 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~--~~~~~~~--~~~--~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~  429 (439)
                      +.......++.+++.++.|++.||++||+  .......  ...  ......... .+...........+.+..+..+..+
T Consensus       254 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (399)
T TIGR00893       254 GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGW  333 (399)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHH
Confidence            77788888999999999999999999985  1111111  111  111111111 1122222223333333333678888


Q ss_pred             eeccccccCC
Q 013655          430 VYAPEVSHRS  439 (439)
Q Consensus       430 ~~~~e~~p~~  439 (439)
                      ++.+|.+|++
T Consensus       334 ~~~~~~~~~~  343 (399)
T TIGR00893       334 ALISDNAPGN  343 (399)
T ss_pred             HHHHhhcChh
Confidence            9999998864

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.5e-27  Score=214.50  Aligned_cols=324  Identities=19%  Similarity=0.175  Sum_probs=254.1

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655           23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI  102 (439)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~  102 (439)
                      .++.+++.+++..+.+...++.+..++++.+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.+
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~   87 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML   87 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence            44556677888888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc---hHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013655          103 VTSAAGLLSAFAP---NYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL  179 (439)
Q Consensus       103 ~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~  179 (439)
                      +..+..+..+++.   +++.+++++++.|++.+...+..+.+++++|++++|.++|+.. ..++|..+...++..+....
T Consensus        88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223          88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence            9999998888874   4569999999999999988888899999999999999999999 89999999999999998888


Q ss_pred             c---hhHHHHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCC
Q 013655          180 G---WRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSS  255 (439)
Q Consensus       180 g---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (439)
                      +   |+....+..+..++..++ ++...+.|......+.. +.                                     
T Consensus       167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~-~~-------------------------------------  208 (417)
T COG2223         167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ-LP-------------------------------------  208 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc-ch-------------------------------------
Confidence            8   999888888777776555 44444443210000000 00                                     


Q ss_pred             CCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 013655          256 SNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL  335 (439)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (439)
                                                               ..++.++++   +.+|...+.|+.....+.+...+.|.|
T Consensus       209 -----------------------------------------~~~~~v~~~---~~~W~lsllY~~tFG~Fvgfs~~l~~~  244 (417)
T COG2223         209 -----------------------------------------AQLKAVFSN---KDTWLLSLLYFATFGGFVGFSAYLPMY  244 (417)
T ss_pred             -----------------------------------------hHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                     022333322   445667777777777777777777777


Q ss_pred             hcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc-------ccc
Q 013655          336 NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ-------PKG  408 (439)
Q Consensus       336 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-------~~~  408 (439)
                      ..+         +.|.+...++.....+.+.+.+.|+++|+++||+|.++++...+..++++........       +..
T Consensus       245 ~~~---------~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~  315 (417)
T COG2223         245 LVT---------QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFV  315 (417)
T ss_pred             HHH---------hcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchH
Confidence            755         3557777778888899999999999999999999998888888888888777766543       233


Q ss_pred             hhhhHHHHHHhhhhheeeeeeeeccccccC
Q 013655          409 LTTGLLFGARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       409 ~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      ......+..+++.+......+.+++.++|.
T Consensus       316 ~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~  345 (417)
T COG2223         316 VFVAVFLALFVFAGLGNGSVFKMIPVIFPK  345 (417)
T ss_pred             HHHHHHHHHHHHhccCcchheeechHHHHh
Confidence            334445555566666667777777777764

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.96  E-value=2.5e-27  Score=225.35  Aligned_cols=321  Identities=14%  Similarity=0.106  Sum_probs=233.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc
Q 013655           35 GMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA  114 (439)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~  114 (439)
                      ....+...+......+..|.+..+++.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666777778888888999999999999999999999999999999999999999999999888888887777


Q ss_pred             c-----hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655          115 P-----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS  188 (439)
Q Consensus       115 ~-----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~  188 (439)
                      +     +++.+++.|++.|++.+.. +...+++.|+.|+++|++++++.+.+..+|..++|.+++++.+..|||..|++.
T Consensus        85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            6     9999999999999999988 777899999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcc
Q 013655          189 AFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMAR  268 (439)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (439)
                      ++..++..+..+.++.++...  +++.+..++..                                              
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------------------------------------------  196 (365)
T TIGR00900       165 AVGFAISALLIVSVRIPELAA--SEIQALSNAVL----------------------------------------------  196 (365)
T ss_pred             HHHHHHHHHHHHhcccccCCC--ccccccchhHH----------------------------------------------
Confidence            776666554444332211000  00000000000                                              


Q ss_pred             cCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhcCCCccccccc
Q 013655          269 DEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLV-LLTTELNNGQNKCVSNEL  347 (439)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  347 (439)
                                              ++....++.+++++..+......+...   ..+.... .+.|.+..+.        
T Consensus       197 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--------  241 (365)
T TIGR00900       197 ------------------------RDTREGIKFVLKNPLLRTLLLLALLFN---LVFAPAIVALFPYVQSKY--------  241 (365)
T ss_pred             ------------------------HHHHhHHHHHHcCcHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHH--------
Confidence                                    000013445555444433333222221   1111121 3334443210        


Q ss_pred             ccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc-cchhhhHHHHHHhhhhheee
Q 013655          348 QSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP-KGLTTGLLFGARICITVTFT  426 (439)
Q Consensus       348 ~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~  426 (439)
                       .+.+....+.......++.+++.++.+++.||++||+.+..+..+.+++.+.+.+.++ .+...+..++.|++.+...+
T Consensus       242 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  320 (365)
T TIGR00900       242 -LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINV  320 (365)
T ss_pred             -hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence             2255555677788888999999999999999999999988887777777666665553 55556677788888888888


Q ss_pred             eeeeeccccccCC
Q 013655          427 VVYVYAPEVSHRS  439 (439)
Q Consensus       427 ~~~~~~~e~~p~~  439 (439)
                      ...++..|.+|++
T Consensus       321 ~~~~~~~~~~~~~  333 (365)
T TIGR00900       321 PQGTLLQRRVPAE  333 (365)
T ss_pred             HHHHHHHHhCCHH
Confidence            8888888888863

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.96  E-value=4.6e-27  Score=233.07  Aligned_cols=183  Identities=26%  Similarity=0.457  Sum_probs=162.1

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Q 013655           24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV  103 (439)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~  103 (439)
                      ++.+++.+..++++++...+......+..|.+.+++|.|..+.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            35667777788888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 013655          104 TSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR  182 (439)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~  182 (439)
                      .+++.++..++++++.+++.|++.|++.+.. +....++.|++|+++|++++++...+..+|..++|.+.+++.+.++||
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  174 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR  174 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            9999999999999999999999999998887 777789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHhcccCCc
Q 013655          183 WLLGLSAFPSSLLLLLYSVTPESP  206 (439)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~  206 (439)
                      ..|++..+..++..+....+|+++
T Consensus       175 ~~f~~~~~~~~~~~~~~~~~p~~~  198 (496)
T PRK03893        175 ALFFIGILPIIFALWLRKNLPEAE  198 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCch
Confidence            999876554444443344455543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.96  E-value=4.7e-28  Score=229.18  Aligned_cols=321  Identities=23%  Similarity=0.329  Sum_probs=231.3

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc
Q 013655           36 MGWISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA  114 (439)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~  114 (439)
                      +..+..........+..| .+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~   82 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence            455666677777788888 8899999999999999999999999999999999999999999999999999996666666


Q ss_pred             chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHH
Q 013655          115 PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSS  193 (439)
Q Consensus       115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~  193 (439)
                      ++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|..++|.+++++.+..+||..|++.+++.+
T Consensus        83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~  162 (352)
T PF07690_consen   83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL  162 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred             hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence            78889999999999999888 77889999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCc
Q 013655          194 LLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS  272 (439)
Q Consensus       194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (439)
                      +..++ ..+++++++....+.+.++.                                                      
T Consensus       163 ~~~il~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------  188 (352)
T PF07690_consen  163 IAAILFILFLPEPPPPRERESPKESE------------------------------------------------------  188 (352)
T ss_dssp             HHHHHHHCCC---STTTT--SSTTTT------------------------------------------------------
T ss_pred             hhhhhHhhhhhhcccccccccccccc------------------------------------------------------
Confidence            87664 34444443211000000000                                                      


Q ss_pred             hhHhhhccccccchhhccccchhHH-HHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCC
Q 013655          273 ISEAKEMKSEDSTSTLANSNMGGIT-ALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGK  351 (439)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  351 (439)
                       ++++                .++. .++.+++++..+   ......+.....++....+.|.+..+         ..+.
T Consensus       189 -~~~~----------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~  239 (352)
T PF07690_consen  189 -SKKP----------------KPLKPGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQE---------VLGF  239 (352)
T ss_dssp             ---HH----------------HCCCH-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCH---------HHHC
T ss_pred             -cccc----------------cccccccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhh---------ccCC
Confidence             0000                0000 133444443332   12222222333334455556655322         1224


Q ss_pred             C-CCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc---cccchhhhHHHHHHhhhhheeee
Q 013655          352 S-RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ---QPKGLTTGLLFGARICITVTFTV  427 (439)
Q Consensus       352 ~-~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~  427 (439)
                      + ....+.......+..++++++.|++.||+++|+..........+..+.+...   ++........++.|++.+...+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  319 (352)
T PF07690_consen  240 SGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPI  319 (352)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4 3444667888888899999999999999998777766666666655555433   23355556777788888888999


Q ss_pred             eeeeccccccCC
Q 013655          428 VYVYAPEVSHRS  439 (439)
Q Consensus       428 ~~~~~~e~~p~~  439 (439)
                      ...+..|.+|++
T Consensus       320 ~~~~~~~~~~~~  331 (352)
T PF07690_consen  320 LFSLIQELVPPE  331 (352)
T ss_dssp             HHHHHHCCCHTC
T ss_pred             HHHHHHHhCCHH
Confidence            999999998864

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.96  E-value=4.4e-27  Score=225.51  Aligned_cols=312  Identities=15%  Similarity=0.195  Sum_probs=226.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch
Q 013655           37 GWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN  116 (439)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~  116 (439)
                      ..+..........+..|.+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++++
T Consensus        13 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   92 (385)
T TIGR00710        13 LSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN   92 (385)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            34555566677777889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655          117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL  195 (439)
Q Consensus       117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~  195 (439)
                      ++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..+++.+++++.+..+||..+++.++..++.
T Consensus        93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  172 (385)
T TIGR00710        93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL  172 (385)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            999999999999999988 7777899999999999999999999999999999999999999899999999888776665


Q ss_pred             HHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchh
Q 013655          196 LLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSIS  274 (439)
Q Consensus       196 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (439)
                      .+. .+..||+++..    ++++.+                                                       
T Consensus       173 ~~~~~~~~~~~~~~~----~~~~~~-------------------------------------------------------  193 (385)
T TIGR00710       173 SALIFFILPETLPYE----ARIQIS-------------------------------------------------------  193 (385)
T ss_pred             HHHHHHhCCCCCCCc----ccCCHH-------------------------------------------------------
Confidence            544 34445542110    000000                                                       


Q ss_pred             HhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCC
Q 013655          275 EAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRD  354 (439)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  354 (439)
                                         ..+..++++++++..+...+...   .....++....+.|.+..+         +.+.++.
T Consensus       194 -------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------~~g~~~~  242 (385)
T TIGR00710       194 -------------------TYFETFLLLLKSKMFWGYALIYG---ASFGGFFAFFSGAPFVYID---------IMGVSPS  242 (385)
T ss_pred             -------------------HHHHHHHHHHcCchhHHHHHHHH---HHHHHHHHHHHcChHHHHH---------HcCCCHH
Confidence                               00013334444333322222211   1122222233333433321         1235666


Q ss_pred             CchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-----cccchhhhHHHHHHhhhhheeeeee
Q 013655          355 INYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ-----QPKGLTTGLLFGARICITVTFTVVY  429 (439)
Q Consensus       355 ~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~  429 (439)
                      ..+.......++.++++++.|++.||+|+|+.+..+..+..++.+.+...     ..........++.|++.+...+...
T Consensus       243 ~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  322 (385)
T TIGR00710       243 VFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAM  322 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777888889999999999999999999998887777666655544332     1122333445566777777777777


Q ss_pred             eeccccccC
Q 013655          430 VYAPEVSHR  438 (439)
Q Consensus       430 ~~~~e~~p~  438 (439)
                      ....|..|+
T Consensus       323 ~~~~~~~~~  331 (385)
T TIGR00710       323 AYALEDFPH  331 (385)
T ss_pred             HHHhccCcc
Confidence            777777764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.96  E-value=5.2e-27  Score=225.15  Aligned_cols=295  Identities=16%  Similarity=0.143  Sum_probs=216.0

Q ss_pred             HHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 013655           46 MLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRC  125 (439)
Q Consensus        46 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (439)
                      ...++..|.+.+++|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.++.+++++++.+++.|+
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~  105 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL  105 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHhHHHHHHHHHHHhccc
Q 013655          126 LVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-GWRWLLGLSAFPSSLLLLLYSVTP  203 (439)
Q Consensus       126 l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~  203 (439)
                      +.|++.+.. +....++.+++| ++|++++|++..+..+|..+++.+++++.++. +||..+.+.++..++..+..+...
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  184 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS  184 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999987 666677888886 78999999999999999999999999988875 899988776655544433332221


Q ss_pred             CCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccc
Q 013655          204 ESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSED  283 (439)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (439)
                      ++.+      +.++            +.+                 .                              .  
T Consensus       185 ~~~~------~~~~------------~~~-----------------~------------------------------~--  197 (393)
T PRK09705        185 AREV------ASSH------------KTT-----------------T------------------------------T--  197 (393)
T ss_pred             cCCC------cccc------------CCC-----------------c------------------------------C--
Confidence            1100      0000            000                 0                              0  


Q ss_pred             cchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHH
Q 013655          284 STSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFIT  363 (439)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  363 (439)
                                    ..+.+++++    .+...+.+++....++....|.|.+..+          .|.+...++...+..
T Consensus       198 --------------~~~~l~~~~----~~~l~~~~~~~~~~~~~~~~~lp~~l~~----------~g~s~~~ag~~~~~~  249 (393)
T PRK09705        198 --------------PVRVVFTPR----AWTLGVYFGLINGGYASLIAWLPAFYIE----------IGASAQYSGSLLALM  249 (393)
T ss_pred             --------------CcccccCHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCChhhhhHHHHHH
Confidence                          000011121    2222333344455666777777777754          346777778888899


Q ss_pred             hhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeecccccc
Q 013655          364 SFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSH  437 (439)
Q Consensus       364 ~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p  437 (439)
                      +++.++|+++.+++.||++||+.+..+..+.+++.+++...++... ....++.+++.+..++.......+.+|
T Consensus       250 ~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~g~g~g~~~~~~~~~~~~~~~  322 (393)
T PRK09705        250 TLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLP-VLWAMVCGLGLGGAFPLCLLLALDHSV  322 (393)
T ss_pred             HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHhccchHHHHHHHHHhhcC
Confidence            9999999999999999999999888887777776655443332211 122345566666666655555555553

>PRK10133 L-fucose transporter; Provisional

Probab=99.96  E-value=2.1e-26  Score=223.30  Aligned_cols=324  Identities=14%  Similarity=0.107  Sum_probs=228.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655           25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT  104 (439)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  104 (439)
                      +.....+..+.+.++..++......+..|.+.+++|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~  101 (438)
T PRK10133         22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            33455566667777888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---hhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-c-
Q 013655          105 SAAGLLS---AFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-R-  178 (439)
Q Consensus       105 ~~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-~-  178 (439)
                      +++.+++   .++++++.++++|++.|++.|.. +...+++.++.++++|...+++.+....+|..+++.+++.+.. . 
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9998775   46789999999999999999988 6777888888777777778999999999999999998876431 0 


Q ss_pred             ------------------------cchhHHHHHhH-HHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCC
Q 013655          179 ------------------------LGWRWLLGLSA-FPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTK  232 (439)
Q Consensus       179 ------------------------~g~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (439)
                                              .+||.+|+... +..++..+. ....||.+.    +++.++..             
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~~~~~-------------  244 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHSDAKQ-------------  244 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----cccccccc-------------
Confidence                                    24565665433 322222222 222232110    00000000             


Q ss_pred             CCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHH
Q 013655          233 LPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTL  312 (439)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  312 (439)
                                                                                  .+.....+.+++++..+...
T Consensus       245 ------------------------------------------------------------~~~~~~~~~ll~~~~~~~~~  264 (438)
T PRK10133        245 ------------------------------------------------------------GSFSASLSRLARIRHWRWAV  264 (438)
T ss_pred             ------------------------------------------------------------cchhhhHHHHHhCchHHHHH
Confidence                                                                        00000233455444333322


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHhh-cCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHH
Q 013655          313 LLWLVFFGNAFSYYGLVLLTTELN-NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF  391 (439)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~  391 (439)
                      +..+   +.....++...|.+.+. ++         ..|.+....+.......++.++|+++++++.||+|+|+++..+.
T Consensus       265 l~~~---~~~~~~~~~~~~~~~~l~~~---------~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~  332 (438)
T PRK10133        265 LAQF---CYVGAQTACWSYLIRYAVEE---------IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA  332 (438)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHhhh---------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            2222   22233233333444442 11         13477777788889999999999999999999999999988887


Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeeccccccC
Q 013655          392 FCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      .+.++.++...+.++. .....+.+.|++.+..+|..++...|.+|+
T Consensus       333 ~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~  378 (438)
T PRK10133        333 LIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ  378 (438)
T ss_pred             HHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            7766665555444432 334566788999999999999988887765

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.96  E-value=1.6e-26  Score=225.97  Aligned_cols=183  Identities=16%  Similarity=0.183  Sum_probs=146.2

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Q 013655           24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV  103 (439)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~  103 (439)
                      ++++|.++...++............++..|++.++ |+|..+.+++.+.+.+++.+++++.|+++||+|||++++.+.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~  102 (452)
T PRK11273         24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  102 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence            34455555555555666666655667788888888 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc----chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHH-HHHHHHHhhc
Q 013655          104 TSAAGLLSAFA----PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTIL-EAGIAWLVMP  177 (439)
Q Consensus       104 ~~~~~~~~~~~----~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i-~~~l~~~l~~  177 (439)
                      .+++.+++++.    .+++.+++.|++.|++.+.. +.....+.+++|+++|++++|+.+.+.++|..+ +|.+...+..
T Consensus       103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~  182 (452)
T PRK11273        103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW  182 (452)
T ss_pred             HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99888888765    36888899999999998887 666778889999999999999999999998754 5544333333


Q ss_pred             ccchhHHHHHhHHHHHHH-HHHHhcccCCch
Q 013655          178 RLGWRWLLGLSAFPSSLL-LLLYSVTPESPR  207 (439)
Q Consensus       178 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~  207 (439)
                      ..|||..|++.+++.++. .+..+++||+|+
T Consensus       183 ~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~  213 (452)
T PRK11273        183 FNDWHAALYMPAFAAILVALFAFAMMRDTPQ  213 (452)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence            459999999888776664 344566677653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=7.1e-27  Score=222.51  Aligned_cols=328  Identities=16%  Similarity=0.177  Sum_probs=219.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655           32 AYAGMGWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL  110 (439)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  110 (439)
                      +..++.++..........++.|. +.+++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.++.+.++.+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~   83 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW   83 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34556666777777888888995 88999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhcc-hHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc----------cc
Q 013655          111 SAFAP-NYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP----------RL  179 (439)
Q Consensus       111 ~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~----------~~  179 (439)
                      ..+++ +++.+++.|++.|++.+...+..+++.+++|+++|+++.++...+.++|..+++.+++.+..          ..
T Consensus        84 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~  163 (366)
T TIGR00886        84 AGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHL  163 (366)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            99999 99999999999999866556667889999999999999999998788888777777766543          34


Q ss_pred             chhHHH-HHhHHHHHHH-HHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCC
Q 013655          180 GWRWLL-GLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSN  257 (439)
Q Consensus       180 g~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (439)
                      +||+.+ +..+++..+. .+.....+++|+..    ++ +.+.     +   ..                +..       
T Consensus       164 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~-----~---~~----------------~~~-------  207 (366)
T TIGR00886       164 AWGWAFVIVPAGILLLPALLIFFVGADTPPGK----PA-TGKL-----S---FK----------------GAR-------  207 (366)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhcccCCccc----cc-chhc-----c---cc----------------ccc-------
Confidence            899988 4434443333 33344455543210    00 0000     0   00                000       


Q ss_pred             CCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 013655          258 EDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNN  337 (439)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (439)
                            .   +.+   +                   +......+.++++..+   ...+..++....++....+.+.+..
T Consensus       208 ------~---~~~---~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  253 (366)
T TIGR00886       208 ------W---SVG---T-------------------GALGDQLKVFRDRHTW---ILALLYSVTFGSFLGVSSIFAMFFK  253 (366)
T ss_pred             ------c---ccc---c-------------------hhHHHHHHHHhccchh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0   000   0                   0000122233322222   2222222333333444455555553


Q ss_pred             CCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh--cc--ccchhhhH
Q 013655          338 GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF--QQ--PKGLTTGL  413 (439)
Q Consensus       338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~  413 (439)
                      +.         .|.+...++.......+..++++++.|++.||+|||+.+..+....+.+...+..  ..  +.+..+..
T Consensus       254 ~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (366)
T TIGR00886       254 DQ---------FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVL  324 (366)
T ss_pred             HH---------cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence            21         2356666677778888889999999999999999988777666665555444433  22  23333344


Q ss_pred             HHHHHhhhhheeeeeeeeccccccC
Q 013655          414 LFGARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       414 ~~~~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      ..+..++.+...+..+.+++|++|.
T Consensus       325 ~~~~~~~~g~~~~~~~~~~~~~~~~  349 (366)
T TIGR00886       325 FVALFFFSGAGNGSTFALVPHIFRR  349 (366)
T ss_pred             HHHHHHHhccccchhhhcchhhchh
Confidence            4555556666667777777787764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.96  E-value=1.3e-26  Score=227.74  Aligned_cols=288  Identities=16%  Similarity=0.174  Sum_probs=214.7

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------hcCCCchhhHHHHHHHHHHHHHH
Q 013655           23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQS----------------------LWHLSPNQESLITSVVFAGMLVG   80 (439)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~g~~~~~~~~~~~~~   80 (439)
                      ..+.++.+..++.+++...+.++...+...+.+.+                      +++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            45667778888888888888888888887777765                      78999999999999999999999


Q ss_pred             HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHH
Q 013655           81 AYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA--PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF  157 (439)
Q Consensus        81 ~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~  157 (439)
                      ++++|+++||+|||+++..+.++++++.++..++  .+++.+++.|++.|++.+.. +....++.|++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999999988888776543  56888999999999999998 77789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccc-chhHHHHHhHHHHHHHHHHHhc-ccCCchhhhhccchHHHHHHHHHHHHHhCCCCCC
Q 013655          158 QTFWTVGTILEAGIAWLVMPRL-GWRWLLGLSAFPSSLLLLLYSV-TPESPRYLCLKGRTAEARHVLEKIAKINGTKLPS  235 (439)
Q Consensus       158 ~~~~~~g~~i~~~l~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (439)
                      ..+..+|..+++++.+++.+.. |||..|++.+++.++..++++. .+++|+.....  .++.++   ...+...++   
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~---~i~~~~~~~---  244 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI--SKFEKK---YINSSLQGQ---  244 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC--CHHHHH---HHHhhcccc---
Confidence            9999999999999999999884 9999999988887776655444 44554321100  000000   000000000   


Q ss_pred             CCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHH
Q 013655          236 GNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLW  315 (439)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  315 (439)
                                                               ++...             ...+++++++++..   +...
T Consensus       245 -----------------------------------------~~~~~-------------~~~~~~~~~~~~~~---~~~~  267 (465)
T TIGR00894       245 -----------------------------------------KGSTR-------------QSLPIKAIPKSLPV---WAIW  267 (465)
T ss_pred             -----------------------------------------cCCCC-------------CCCCHHHHhcCHHH---HHHH
Confidence                                                     00000             00135556655433   4444


Q ss_pred             HHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhH
Q 013655          316 LVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK  384 (439)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr  384 (439)
                      +..++....++....|.|.+..+.         .|.+....+...++..++.+++.+++|+++||+++|
T Consensus       268 ~~~~~~~~~~~~~~~~lp~~l~~~---------~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       268 FAIFGHFWLYTILPTYLPTFISWV---------LRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---------hCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            455556666667777788776432         346666678888888999999999999999998754

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.95  E-value=1.4e-26  Score=229.11  Aligned_cols=361  Identities=15%  Similarity=0.142  Sum_probs=241.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013655           30 VLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL  109 (439)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  109 (439)
                      .+..+.++.+...++.....+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            34556677788888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655          110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS  188 (439)
Q Consensus       110 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~  188 (439)
                      +++++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+..+|..++|.+++++.++++||+.|++.
T Consensus        83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~  162 (485)
T TIGR00711        83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN  162 (485)
T ss_pred             HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence            9999999999999999999999988 777899999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHH-----H-HHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCC
Q 013655          189 AFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLE-----K-IAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDT  261 (439)
Q Consensus       189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (439)
                      +.+.++..++ .+..|++++..  +++.+.......     . .......+.. + ...+  .+                
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~~~~~~~~~-~-~~~~--~~----------------  220 (485)
T TIGR00711       163 VPIGIIVVVVAFFILPRDKPAA--SENFDFLGLLLLSVGLGSLLYGLSEGPER-G-WFDS--NE----------------  220 (485)
T ss_pred             hHHHHHHHHHHHHHcCCccccc--cCCCcHHHHHHHHHHHHHHHHHHhhCCCC-C-CCCc--hH----------------
Confidence            7776665444 34455543211  111111100000     0 0000000000 0 0000  00                


Q ss_pred             chhhhccc----CCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 013655          262 TPKEMARD----EDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNN  337 (439)
Q Consensus       262 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (439)
                      ........    ......+...++             +..+. .+++++.....   .+..+.....++....+.|.+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~  283 (485)
T TIGR00711       221 ILILSITGLVAIIAFVVWELTDDN-------------PLVDL-RLFKYRNFTIG---CVYMSLLGLGLYGSFYLLPLYLQ  283 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCC-------------CccCH-HHHcCCChHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000000    000000000000             00011 23333222222   22223333444444555565553


Q ss_pred             CCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh--cc--ccchhhhH
Q 013655          338 GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF--QQ--PKGLTTGL  413 (439)
Q Consensus       338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~  413 (439)
                      +.         .|.+...++.......++.+++.++.|++.||+|||+.+..+..+.+++.+.+.+  ..  +.+.....
T Consensus       284 ~~---------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (485)
T TIGR00711       284 QV---------LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALP  354 (485)
T ss_pred             Hh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence            31         3466666788888888999999999999999999999998888888877776652  12  22334445


Q ss_pred             HHHHHhhhhheeeeeeeeccccccC
Q 013655          414 LFGARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       414 ~~~~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      .++.|++.+..++.......+.+|+
T Consensus       355 ~~l~g~g~~~~~~~~~~~~~~~~~~  379 (485)
T TIGR00711       355 QFIRGFGMGCFFMPLTTIALSGLPP  379 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            6667777776665555555555664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.95  E-value=2.3e-26  Score=221.61  Aligned_cols=307  Identities=18%  Similarity=0.093  Sum_probs=215.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL  109 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  109 (439)
                      +....+..+...++..+..+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (399)
T PRK05122         17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGL   96 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHH
Confidence            334555566666777777777776 5688999999999999999999999999999999999999999999988877665


Q ss_pred             HHhhc--------chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655          110 LSAFA--------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG  180 (439)
Q Consensus       110 ~~~~~--------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g  180 (439)
                      .+.++        .+++.+++.|++.|++.+.. +....++.++.|+++|++++++...+..+|..+++++++++.+.+|
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  176 (399)
T PRK05122         97 LYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG  176 (399)
T ss_pred             HHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc
Confidence            54432        25678899999999999988 6667888999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCC
Q 013655          181 WRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDD  260 (439)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (439)
                      |+..+++..+..++..+.....|++++    + +. + +.                                        
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~-~-~~----------------------------------------  209 (399)
T PRK05122        177 LAGLGLLIMLLALLGLLLARPRPAVPP----V-KG-E-RL----------------------------------------  209 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCC----C-Cc-c-ch----------------------------------------
Confidence            999887766654443332222222110    0 00 0 00                                        


Q ss_pred             CchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCC
Q 013655          261 TTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQN  340 (439)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (439)
                                                           ++++.+++ .+....    ........+.....+.+.+..+. 
T Consensus       210 -------------------------------------~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-  246 (399)
T PRK05122        210 -------------------------------------PFRRVLGR-VWPYGM----GLALASIGFGTIATFITLYYAAR-  246 (399)
T ss_pred             -------------------------------------hHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHc-
Confidence                                                 11111111 011111    11111222233333444443221 


Q ss_pred             cccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhh
Q 013655          341 KCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARIC  420 (439)
Q Consensus       341 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  420 (439)
                               +.  ...+.......++.++++++.|++.||+|+|+.+..+..+.+++.+.+...++.+...+..++.|++
T Consensus       247 ---------~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  315 (399)
T PRK05122        247 ---------GW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG  315 (399)
T ss_pred             ---------cc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence                     12  2334556677788899999999999999999998888888777777666666655555667778888


Q ss_pred             hhheeeeeeeeccccccC
Q 013655          421 ITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       421 ~~~~~~~~~~~~~e~~p~  438 (439)
                      .+..++.......|.+|+
T Consensus       316 ~~~~~~~~~~~~~~~~~~  333 (399)
T PRK05122        316 FSLVFPALGVEAVKRVPP  333 (399)
T ss_pred             HHHHHHHHHHHHHHhCCH
Confidence            877777666666677664

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.95  E-value=1.6e-26  Score=221.08  Aligned_cols=297  Identities=15%  Similarity=0.094  Sum_probs=214.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL  110 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  110 (439)
                      ++......+..+.......+.+|.+.+++|.|..+.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            34445566667777778888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhH
Q 013655          111 SAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSA  189 (439)
Q Consensus       111 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~  189 (439)
                      .+++++++.+++.|++.|++.+.. +.....+.++.++++|++++++...+..+|..++|++++++.+..|||..|++.+
T Consensus        85 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~  164 (382)
T PRK10091         85 FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA  164 (382)
T ss_pred             HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence            999999999999999999999887 6666778899999999999999999999999999999999999899999999988


Q ss_pred             HHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcc
Q 013655          190 FPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMAR  268 (439)
Q Consensus       190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (439)
                      +..++..+. ...+||.++    +.+. +.++                                                
T Consensus       165 ~~~~~~~~~~~~~lp~~~~----~~~~-~~~~------------------------------------------------  191 (382)
T PRK10091        165 VFNIAVLASIYFWVPDIRD----EAKG-GLRE------------------------------------------------  191 (382)
T ss_pred             HHHHHHHHHHHHhCCCCCc----cccc-CHHH------------------------------------------------
Confidence            776665443 444565421    0000 0000                                                


Q ss_pred             cCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccc
Q 013655          269 DEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQ  348 (439)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (439)
                                                   .++.+.+++. +.....   .++.....+....+.+.+..+         .
T Consensus       192 -----------------------------~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~  229 (382)
T PRK10091        192 -----------------------------QFHFLRSPAP-WLIFAA---TMFGNAGVFAWFSYIKPYMMF---------I  229 (382)
T ss_pred             -----------------------------HHHHhcChHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHH---------h
Confidence                                         1111222221 111111   111111111111122222211         1


Q ss_pred             cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-ccccchhhhHHHHHHhhhh
Q 013655          349 SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF-QQPKGLTTGLLFGARICIT  422 (439)
Q Consensus       349 ~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~  422 (439)
                      .|.+....+...+...++.++++++.+++.||+|+|+.+..+..+.+++.+.+.. .++.+...+..++.+++..
T Consensus       230 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~  304 (382)
T PRK10091        230 SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLF  304 (382)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3466666788888999999999999999999999999888888777776655443 3333333334444444443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=2.1e-26  Score=228.09  Aligned_cols=323  Identities=27%  Similarity=0.352  Sum_probs=228.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHh
Q 013655           64 NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFL  142 (439)
Q Consensus        64 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~  142 (439)
                      ++.+++.+...++..+++++.|+++|++|||+.++++.++..++.++.++++|++.++++|++.|+|.|.. .+.+.+++
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            35589999999999999999999999999999999999999999999999999999999999999999999 77779999


Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHH
Q 013655          143 EFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHV  221 (439)
Q Consensus       143 ~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (439)
                      |..|++.||...+..+....+|..++..++....+. ++||..+.+..+++++..+..+++||+|++..++++.+++++.
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~  248 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRS  248 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHH
Confidence            999999999999999999999999985554444332 4899999999999988877788899999999999999999988


Q ss_pred             HHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHH
Q 013655          222 LEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLI  301 (439)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (439)
                      +.++...++.+         .+.+.++.+                    .+...+......+             ..+++
T Consensus       249 l~~l~g~~~~~---------~~~~~~~~~--------------------~~~~~~~~~~~~~-------------~~~~~  286 (513)
T KOG0254|consen  249 LKRLRGLSPED---------VEVELELLK--------------------IKLLVEAEVAEGK-------------ASWGE  286 (513)
T ss_pred             HHHHhCCCCcc---------hHHHHHHHH--------------------HHHHHhhhccccc-------------ccHHH
Confidence            88876522110         011110000                    0000000000000             03555


Q ss_pred             hhChHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHH
Q 013655          302 LLSPELIKSTLLLWLVFFGNA-FSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR  380 (439)
Q Consensus       302 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr  380 (439)
                      ++++..+++....+.....+. ..+....++.+.+....          |..... .....+.++..+++.+++.+++||
T Consensus       287 l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~----------g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~  355 (513)
T KOG0254|consen  287 LFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA----------GLKSDT-FLASIILGVVNFLGTLVATYLVDR  355 (513)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc----------CCCCch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665545555554333333222 22222223333333221          233222 566677778888999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhc----cc--------cchhh-hHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          381 LGRKLSMSSMFFCCCIFLVPLLFQ----QP--------KGLTT-GLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       381 ~grr~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~-~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      +|||+.++.+...+.++.+++...    ..        .+..+ ..++....+..+..|+.+.+.+|.+|.+
T Consensus       356 ~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~  427 (513)
T KOG0254|consen  356 FGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR  427 (513)
T ss_pred             hccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh
Confidence            999999999999998887766531    11        11222 2223333344555688889999999964

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.95  E-value=1.5e-25  Score=216.47  Aligned_cols=316  Identities=14%  Similarity=0.017  Sum_probs=222.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655           25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT  104 (439)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  104 (439)
                      +..+.....+.+..+...+......+..|.+.+++|.|..+.++..+.+.+++.+++++.|+++||+|||+++..+..+.
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            34455555566666666777777777888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655          105 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW  183 (439)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~  183 (439)
                      +++.++..++++++.+++.|++.|++.+.. +...+.+.|.+|+++|+++.++...+..+|..++|.+++++.+..+||.
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~  168 (406)
T PRK15402         89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRG  168 (406)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence            999999999999999999999999998887 6677888999999999999999988888999999999999999899999


Q ss_pred             HHHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCc
Q 013655          184 LLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTT  262 (439)
Q Consensus       184 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (439)
                      .+++.+++.++..+. .+..||+++..   +++.+.    ++                                      
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~--------------------------------------  203 (406)
T PRK15402        169 MFVLFAALAALSFFGLWRAMPETAGRV---GEKLSL----KE--------------------------------------  203 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCccc---cccccH----HH--------------------------------------
Confidence            999888777766554 34455542110   000000    00                                      


Q ss_pred             hhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcc
Q 013655          263 PKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC  342 (439)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (439)
                                                      ...+++.+++++..+......   +.....++....+.|.+..+    
T Consensus       204 --------------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~----  244 (406)
T PRK15402        204 --------------------------------LGRDYKLVLKNRRFVAGALAL---GLVSLPLLAWIALSPVILIS----  244 (406)
T ss_pred             --------------------------------HHHHHHHHHcCcHHHHHHHHH---HHHHHHHHHHHHHhHHHHHH----
Confidence                                            001344455444333222221   11112222222233433311    


Q ss_pred             cccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-----cccchhhhHHHHH
Q 013655          343 VSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ-----QPKGLTTGLLFGA  417 (439)
Q Consensus       343 ~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  417 (439)
                           +.+.+....+.......++.++|+++.+++.||+++|+.+..+.++.+++.+.+...     .+.+......++.
T Consensus       245 -----~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  319 (406)
T PRK15402        245 -----GEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLY  319 (406)
T ss_pred             -----HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence                 122444444555555667788999999999999999998888877766655554432     1233344556667


Q ss_pred             Hhhhhheeeeee
Q 013655          418 RICITVTFTVVY  429 (439)
Q Consensus       418 g~~~~~~~~~~~  429 (439)
                      +++.+...+...
T Consensus       320 g~g~~~~~~~~~  331 (406)
T PRK15402        320 AFGIGLANAGLY  331 (406)
T ss_pred             HHHHHHHhhhHH
Confidence            777666555443

>PRK12382 putative transporter; Provisional

Probab=99.95  E-value=5.5e-26  Score=218.41  Aligned_cols=304  Identities=15%  Similarity=0.079  Sum_probs=205.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH-
Q 013655           34 AGMGWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS-  111 (439)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~-  111 (439)
                      +.++.+..........+.+|. +.+++|.|..+.|++.+++.+++.++++++|+++||+|||++++.+.+..+++.+.. 
T Consensus        20 ~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~   99 (392)
T PRK12382         20 IAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYL   99 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            334445555556666666775 568899999999999999999999999999999999999999999887776654432 


Q ss_pred             --hh-----cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655          112 --AF-----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW  183 (439)
Q Consensus       112 --~~-----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~  183 (439)
                        .+     .++++.+++.|++.|++.+.. +...+++.++.|+++|++++++.+.+..+|..++|++++++.+.+||+.
T Consensus       100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  179 (392)
T PRK12382        100 LAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAA  179 (392)
T ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence              11     357889999999999999877 6666888999999999999999999999999999999999999899998


Q ss_pred             HHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCch
Q 013655          184 LLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP  263 (439)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (439)
                      .+.+..+..++........|+.++      ++++ ++                                           
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~-------------------------------------------  209 (392)
T PRK12382        180 LALTTMVLPLLAWAFNGTVRKVPA------HAGE-RP-------------------------------------------  209 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCC------Cccc-Cc-------------------------------------------
Confidence            766554443332222211121100      0000 00                                           


Q ss_pred             hhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccc
Q 013655          264 KEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCV  343 (439)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (439)
                                                    +.+...+.++++    . ...    ......+.....+.+.+..+.    
T Consensus       210 ------------------------------~~~~~~~~~~~~----~-~~~----~l~~~~~~~~~~~~~~~~~~~----  246 (392)
T PRK12382        210 ------------------------------SLWSVVGLIWKP----G-LGL----ALQGVGFAVIGTFVSLYFASK----  246 (392)
T ss_pred             ------------------------------hHHHHHHHHHHh----H-HHH----HHHHHHHhHHHHHHHHHHHhc----
Confidence                                          000011111111    1 111    111122222333344443221    


Q ss_pred             ccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhh
Q 013655          344 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITV  423 (439)
Q Consensus       344 ~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  423 (439)
                            +.+  ..+.......++.++++++.|++.||+|+|+.+..+..+.++..+.+.+.++.+...+..++.+++.+.
T Consensus       247 ------~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  318 (392)
T PRK12382        247 ------GWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSL  318 (392)
T ss_pred             ------CCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence                  122  234555667777889999999999999999998888888877777666665555555566777777777


Q ss_pred             eeeeeeeeccccccC
Q 013655          424 TFTVVYVYAPEVSHR  438 (439)
Q Consensus       424 ~~~~~~~~~~e~~p~  438 (439)
                      ..+...+...|.+|+
T Consensus       319 ~~~~~~~~~~~~~~~  333 (392)
T PRK12382        319 IFPALGVEVVKRVPS  333 (392)
T ss_pred             HHHHHHHHHHHhcCH
Confidence            677666666777764

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.95  E-value=1.4e-25  Score=215.57  Aligned_cols=318  Identities=13%  Similarity=0.088  Sum_probs=229.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL  110 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  110 (439)
                      +.+++..++..++......+..|.+++++|+|..+.|++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            44566677777888888889999999999999999999999999999999999999999999999999999999999887


Q ss_pred             Hhh---cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc--------
Q 013655          111 SAF---APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR--------  178 (439)
Q Consensus       111 ~~~---~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~--------  178 (439)
                      +..   .++++.+++.|++.|+|.|.. +...+++.+..|+++|++.+++.+.+.++|..++|.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            644   468999999999999999998 77778888999999999999999999999999999998877422        


Q ss_pred             ------------------cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCcc
Q 013655          179 ------------------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVS  240 (439)
Q Consensus       179 ------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (439)
                                        .+||.+|++.+++.++..++..+.+.++.    +.++++ +.                    
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~----~~~~~~-~~--------------------  219 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPAL----NHSDAK-QI--------------------  219 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----Cccccc-cc--------------------
Confidence                              36999998888776665444333221100    000000 00                    


Q ss_pred             chhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHH
Q 013655          241 DWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFG  320 (439)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  320 (439)
                                                            +.            +   ...+++++++..+...+..+++..
T Consensus       220 --------------------------------------~~------------~---~~~~~~~~~~~~~~~~l~~f~yvg  246 (410)
T TIGR00885       220 --------------------------------------SF------------S---ASLSRLARIRHYREGVIAQFFYVG  246 (410)
T ss_pred             --------------------------------------cc------------h---hhHHHHHhChhHHHHHHHHHHHHH
Confidence                                                  00            0   022234444333333333233322


Q ss_pred             HHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 013655          321 NAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVP  400 (439)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  400 (439)
                      .   ......+.+.+..+.+        .+.+...+....+....+..+|+++++++.||+++|+.+.++..++++..++
T Consensus       247 ~---e~~~~s~l~~y~~~~~--------~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll  315 (410)
T TIGR00885       247 V---QIMCWTFIIQYAVRLI--------PGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLG  315 (410)
T ss_pred             H---HHHHHHHHHHHHhhcc--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            2   2233344555543211        1122222344455555778999999999999999999988888888888777


Q ss_pred             HhhccccchhhhHHHHHHhhhhheeeeeeeeccccccC
Q 013655          401 LLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       401 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      ....++. .....+.+.+++.+..+|..++...+..++
T Consensus       316 ~~~~~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~  352 (410)
T TIGR00885       316 SIFAGGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQ  352 (410)
T ss_pred             HHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            7765553 345667778888888899888887776664

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11043 putative transporter; Provisional

Probab=99.95  E-value=3.7e-25  Score=213.32  Aligned_cols=307  Identities=13%  Similarity=0.128  Sum_probs=216.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchH
Q 013655           38 WISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNY  117 (439)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~  117 (439)
                      .....+......+..|.+.+++|.|+.+.+++.+++.++..++++++|+++||+|||+++..+..+.+++.++..+++++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   94 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA   94 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence            34444556666777788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHH
Q 013655          118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL  196 (439)
Q Consensus       118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~  196 (439)
                      +.+++.|++.|++.+.. +...+.+.|+++++++++..+.......+|..++|.+++++.+.+|||..|++.+++.++..
T Consensus        95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~  174 (401)
T PRK11043         95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI  174 (401)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            99999999999998877 55567889999999999999999999999999999999999999999999998887777766


Q ss_pred             HHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHh
Q 013655          197 LLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEA  276 (439)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (439)
                      +..++++++++.    ++.++.                                                          
T Consensus       175 ~~~~~~~~~~~~----~~~~~~----------------------------------------------------------  192 (401)
T PRK11043        175 LPTLRLKPSKKA----RKQSQD----------------------------------------------------------  192 (401)
T ss_pred             HHHHHcCCCCCc----cccchH----------------------------------------------------------
Confidence            655555543210    000000                                                          


Q ss_pred             hhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCc
Q 013655          277 KEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN  356 (439)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  356 (439)
                                         ..+++++++++..+.....   ..+....++....+.|.+.++          .|.+....
T Consensus       193 -------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~----------~g~s~~~~  240 (401)
T PRK11043        193 -------------------ALTFKQLLKSKTYLGNVLI---FAACSAAFFAWLTGSPFILEQ----------MGYSPADI  240 (401)
T ss_pred             -------------------HHHHHHHHcChhHHHHHHH---HHHHHHHHHHHHHHhHHHHHH----------cCCCHHHH
Confidence                               0033444443332222211   112222333334445555432          23555555


Q ss_pred             hhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---hh--ccccchhhhHHHHHHhhhhheeeeeeee
Q 013655          357 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPL---LF--QQPKGLTTGLLFGARICITVTFTVVYVY  431 (439)
Q Consensus       357 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~  431 (439)
                      +.......++.++|+++.+++.||+++|+.........+++.+.+   ..  .++.+.......+.+++.+..++.....
T Consensus       241 g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (401)
T PRK11043        241 GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQ  320 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666677888999999999999998887655544443333222   22  2223333344556677777777776666


Q ss_pred             ccccccC
Q 013655          432 APEVSHR  438 (439)
Q Consensus       432 ~~e~~p~  438 (439)
                      ..|..|+
T Consensus       321 ~~~~~~~  327 (401)
T PRK11043        321 ALRPFPQ  327 (401)
T ss_pred             HhhhCcc
Confidence            5555553

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.95  E-value=9.4e-27  Score=222.45  Aligned_cols=170  Identities=18%  Similarity=0.298  Sum_probs=150.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch
Q 013655           37 GWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN  116 (439)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~  116 (439)
                      .++..........+..|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   82 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS   82 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence            34566677778888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH-HHHHHhhcccchhHHHHHhHHHHHH
Q 013655          117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEA-GIAWLVMPRLGWRWLLGLSAFPSSL  194 (439)
Q Consensus       117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~-~l~~~l~~~~g~~~~~~~~~~~~~~  194 (439)
                      ++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..+++ .++..+.+..+||..|++.+++.++
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (379)
T TIGR00881        83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII  162 (379)
T ss_pred             HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            999999999999999988 77788999999999999999999999999999999 4677777788999999888877666


Q ss_pred             HHHH-HhcccCCc
Q 013655          195 LLLL-YSVTPESP  206 (439)
Q Consensus       195 ~~~~-~~~~~~~~  206 (439)
                      ..+. .++.++++
T Consensus       163 ~~~~~~~~~~~~~  175 (379)
T TIGR00881       163 VSLICFLLLRDSP  175 (379)
T ss_pred             HHHHHheeeCCCc
Confidence            5443 44555543

>PRK10504 putative transporter; Provisional

Probab=99.95  E-value=5.9e-25  Score=216.46  Aligned_cols=362  Identities=14%  Similarity=0.099  Sum_probs=231.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL  110 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  110 (439)
                      ++.++++.+...+......+..|.+.+++|.|..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   91 (471)
T PRK10504         12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLF   91 (471)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            45566677778888888888999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhH
Q 013655          111 SAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSA  189 (439)
Q Consensus       111 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~  189 (439)
                      +.++++++.+++.|++.|++.+.. +...+.+.|++|+++|+++.|+.....++|..++|.+++++.+..|||+.|.+..
T Consensus        92 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~  171 (471)
T PRK10504         92 CALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI  171 (471)
T ss_pred             HHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence            888999999999999999999988 7777889999999999999999999999999999999999999999999999877


Q ss_pred             HHHHHHHHHH-hcccCCchhhhhccchHHHHHHHH------HHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCc
Q 013655          190 FPSSLLLLLY-SVTPESPRYLCLKGRTAEARHVLE------KIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTT  262 (439)
Q Consensus       190 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (439)
                      ...++..+.. ...|+.+..   +.+.+.......      .....++.+. ... ........--.             
T Consensus       172 ~~~~l~~~~~~~~~~~~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-------------  233 (471)
T PRK10504        172 PVGIIGAIATLMLMPNYTMQ---TRRFDLSGFLLLAVGMATLTLALDGSKG-LGL-SPLAIAGLVAV-------------  233 (471)
T ss_pred             HHHHHHHHHHHHhCCCcccc---CCCCChHHHHHHHHHHHHHHHHHhcCCc-CCc-chHHHHHHHHH-------------
Confidence            6666554443 333443211   111111110000      0000000000 000 00000000000             


Q ss_pred             hhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcc
Q 013655          263 PKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC  342 (439)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (439)
                      ..-... . ...+++...+             +..+.+ +++++.+...+...+...   ..+.....+.|.+.+.    
T Consensus       234 ~~~~~~-~-~~~~~~~~~~-------------~~~~~~-l~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~----  290 (471)
T PRK10504        234 GVVALL-L-YLLHARNNNR-------------ALFSLK-LFRTRTFSLGLAGSFAGR---IGSGMLPFMTPVFLQI----  290 (471)
T ss_pred             HHHHHH-H-HHHHHhcCCC-------------CccCHH-HhcccchHHHHHHHHHHH---HHHHHHHHHHHHHHHH----
Confidence            000000 0 0000000000             000222 444443333333222222   2222222333433321    


Q ss_pred             cccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc-ccc--hhhhHHHHHHh
Q 013655          343 VSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ-PKG--LTTGLLFGARI  419 (439)
Q Consensus       343 ~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~g~  419 (439)
                           ..|.+....++......++.+++.++.+++.||+|||+++..+..+.++..+.+.+.. ..+  ......++.|+
T Consensus       291 -----~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  365 (471)
T PRK10504        291 -----GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGM  365 (471)
T ss_pred             -----HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence                 1235555667777777888888889999999999999999888887777665555432 111  22233455566


Q ss_pred             hhhheeeeeeeeccccccC
Q 013655          420 CITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       420 ~~~~~~~~~~~~~~e~~p~  438 (439)
                      +.+..++....+..+.+|+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~  384 (471)
T PRK10504        366 VNSTRFSSMNTLTLKDLPD  384 (471)
T ss_pred             HHHHHHHHHHHHHHHcCCH
Confidence            6666666666666666664

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.95  E-value=1.8e-25  Score=213.56  Aligned_cols=309  Identities=17%  Similarity=0.115  Sum_probs=209.9

Q ss_pred             HHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH-HHHHHHHHHHHHhhc
Q 013655           37 GWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLI-TAIVTSAAGLLSAFA  114 (439)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~-~~~~~~~~~~~~~~~  114 (439)
                      .++...+......+.+|. +.+++|.|..+.|++.+++.+...+.+++.|+++||+||||.++. +..+.+++.++.+++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   84 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN   84 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence            345556666666676665 567899999999999999999999999999999999999887654 555666677788889


Q ss_pred             chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhH--HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHH
Q 013655          115 PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFW--MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFP  191 (439)
Q Consensus       115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~--~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~  191 (439)
                      ++++.+++.|++.|.+.+.. +...++..|+.|+++|++.  .+....+.++|..++|++++++.+.+|||..|++.+++
T Consensus        85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~  164 (375)
T TIGR00899        85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA  164 (375)
T ss_pred             chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence            99999999998888777666 6666777888887777654  57888888999999999999999999999999998887


Q ss_pred             HHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccC
Q 013655          192 SSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDE  270 (439)
Q Consensus       192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (439)
                      .++..+. ++++||.|+...++.   + +           .                                       
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~---~-~-----------~---------------------------------------  190 (375)
T TIGR00899       165 FVLCGVLVWLFLPSYPRGAPGAL---T-R-----------L---------------------------------------  190 (375)
T ss_pred             HHHHHHHHHHhCCCcccCccccc---C-c-----------c---------------------------------------
Confidence            7666554 445676542100000   0 0           0                                       


Q ss_pred             CchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhcCCCccccccccc
Q 013655          271 DSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL-LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQS  349 (439)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (439)
                                                 +.++.++++..+.... .++.+.....    ...+.|.+..+         +.
T Consensus       191 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~  230 (375)
T TIGR00899       191 ---------------------------EVRGLLASRDTRLLFVACTLMWGCNIL----YIINMPLLIIH---------EL  230 (375)
T ss_pred             ---------------------------hhhhhhcCcchHHHHHHHHHHHHHHHH----HHhhhHHHHHH---------Hc
Confidence                                       0111122222222222 2222221111    12222333211         12


Q ss_pred             CCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeee
Q 013655          350 GKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVY  429 (439)
Q Consensus       350 g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  429 (439)
                      |.+....+.......+..+++.++.|++.||+|||+.+..+..+..+..+.+...++.+......++.+++.+...+...
T Consensus       231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  310 (375)
T TIGR00899       231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM  310 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555556666666667788899999999999999988877776666555554445555455555666777777677777


Q ss_pred             eeccccccCC
Q 013655          430 VYAPEVSHRS  439 (439)
Q Consensus       430 ~~~~e~~p~~  439 (439)
                      .+..|..|++
T Consensus       311 ~~~~~~~~~~  320 (375)
T TIGR00899       311 LYFQDLMPGR  320 (375)
T ss_pred             HHHHHhCcch
Confidence            7788887753

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.94  E-value=5.9e-25  Score=207.68  Aligned_cols=291  Identities=29%  Similarity=0.384  Sum_probs=240.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh
Q 013655           34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF  113 (439)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  113 (439)
                      +....+..........+..|.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~   83 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF   83 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            34556667777778888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655          114 APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS  192 (439)
Q Consensus       114 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~  192 (439)
                      .++++.+++.|++.|++.+.. +...+++.|++|+++|++.+++.+.+..+|..++|.+++.+.+..+|+..+++.+++.
T Consensus        84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
T cd06174          84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG  163 (352)
T ss_pred             hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999999999999988 7778999999999999999999999999999999999999999999999999888877


Q ss_pred             HHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCc
Q 013655          193 SLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS  272 (439)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (439)
                      ++..+...+++                                                                     
T Consensus       164 ~~~~~~~~~~~---------------------------------------------------------------------  174 (352)
T cd06174         164 LLLALLLLFLL---------------------------------------------------------------------  174 (352)
T ss_pred             HHHHHHHHHHH---------------------------------------------------------------------
Confidence            77665544432                                                                     


Q ss_pred             hhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCC
Q 013655          273 ISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKS  352 (439)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  352 (439)
                                                          +..+...+..+...........+.+.+..+.         .+.+
T Consensus       175 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  209 (352)
T cd06174         175 ------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV---------LGLS  209 (352)
T ss_pred             ------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---------cCCC
Confidence                                                0112222222333333334444445444321         1355


Q ss_pred             CCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeee
Q 013655          353 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKL-SMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVY  431 (439)
Q Consensus       353 ~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  431 (439)
                      ....+.......++..++.++.+++.||+|||+ .+..+..+..++.+.+...++.+...+..++.+++.+...+....+
T Consensus       210 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  289 (352)
T cd06174         210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTL  289 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHH
Confidence            556688888899999999999999999999999 9999999888888888777776677778888899999999999999


Q ss_pred             ccccccC
Q 013655          432 APEVSHR  438 (439)
Q Consensus       432 ~~e~~p~  438 (439)
                      ..|..|+
T Consensus       290 ~~~~~~~  296 (352)
T cd06174         290 ASELAPP  296 (352)
T ss_pred             HHhhcCH
Confidence            9999885

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.94  E-value=7e-25  Score=210.23  Aligned_cols=315  Identities=14%  Similarity=0.025  Sum_probs=216.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh
Q 013655           34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF  113 (439)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  113 (439)
                      .+++.+...+.........+.+.++++.+..+.+++.+.+.+++.+.++++|+++||+|||++++.+.++.+++.+++.+
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~   87 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF   87 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence            34555555555545555556678899999999999999999999999999999999999999999999999888877766


Q ss_pred             cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655          114 APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS  192 (439)
Q Consensus       114 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~  192 (439)
                      ..+.   ++.|+++|++.+.. +...+++.|++|+++|++++|+.+....+|..+||.+++++.+. .|+..+.+.+...
T Consensus        88 ~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~  163 (393)
T PRK11195         88 GIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIY  163 (393)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            6554   67899999999988 78889999999999999999999999999999999999999885 4777777666655


Q ss_pred             HHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCc
Q 013655          193 SLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS  272 (439)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (439)
                      ++..+..+.+||++....++  +.+.....++.                                               
T Consensus       164 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~-----------------------------------------------  194 (393)
T PRK11195        164 LLAALFNLFIPRLGARRPGQ--SWNPIALLRDF-----------------------------------------------  194 (393)
T ss_pred             HHHHHHHhcCCCCccccccc--CCCHHHHHHHH-----------------------------------------------
Confidence            55555556677654211000  00000000000                                               


Q ss_pred             hhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCC
Q 013655          273 ISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL-LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGK  351 (439)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  351 (439)
                                             +..++.+++++..+.... ..+.+.+.....+....|.+...             +.
T Consensus       195 -----------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------g~  238 (393)
T PRK11195        195 -----------------------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVAL-------------GI  238 (393)
T ss_pred             -----------------------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------CC
Confidence                                   002333444433333222 22233333333333334444332             35


Q ss_pred             CCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeee
Q 013655          352 SRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVY  431 (439)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  431 (439)
                      +....+......+++.++|.++.+++.||.++++.+..+.. .++..+.+.+.++.+......++.|++.+...+...+.
T Consensus       239 s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~  317 (393)
T PRK11195        239 TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNAL  317 (393)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            56667888888899999999999999999988887776653 33433334444444444555667777777666666666


Q ss_pred             ccccccC
Q 013655          432 APEVSHR  438 (439)
Q Consensus       432 ~~e~~p~  438 (439)
                      ..+..|+
T Consensus       318 ~q~~~~~  324 (393)
T PRK11195        318 LQHRGHV  324 (393)
T ss_pred             HHhhCcc
Confidence            6665543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.94  E-value=6.9e-25  Score=209.87  Aligned_cols=308  Identities=17%  Similarity=0.149  Sum_probs=212.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL  110 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  110 (439)
                      ++.+..+.+..........+..|.+.+++|.|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++..+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666777788888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhH
Q 013655          111 SAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSA  189 (439)
Q Consensus       111 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~  189 (439)
                      ..++++++.++++|++.|++.+.. +...+.+.+..++++|+++++..+.+.++|..+||.+++.+.+...|...+....
T Consensus        88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~  167 (381)
T PRK03633         88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGL  167 (381)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence            999999999999999999999887 6666777888899999999999999999999999999999877543433333221


Q ss_pred             HHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhccc
Q 013655          190 FPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARD  269 (439)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (439)
                      + ...... ..+.+.+++    +.++ +                +                                   
T Consensus       168 ~-~~~~~~-~~~~~~~~~----~~~~-~----------------~-----------------------------------  189 (381)
T PRK03633        168 V-LAAILP-LLFTRILNQ----QAEN-H----------------D-----------------------------------  189 (381)
T ss_pred             H-HHHHHH-HHHhcccCC----CCCC-C----------------C-----------------------------------
Confidence            1 111111 111111100    0000 0                0                                   


Q ss_pred             CCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccccccccc
Q 013655          270 EDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQS  349 (439)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (439)
                                   .             .+.+++++++..+......+.   ....+.....+.|.+..+          .
T Consensus       190 -------------~-------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lp~~~~~----------~  230 (381)
T PRK03633        190 -------------S-------------TSIWPMLKLRQARLGVNGCII---SGIVLGSLYGLMPLYLNH----------Q  230 (381)
T ss_pred             -------------C-------------CCHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHHHHH----------c
Confidence                         0             011122222222222111111   112222233345555533          2


Q ss_pred             CCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeee
Q 013655          350 GKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVY  429 (439)
Q Consensus       350 g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  429 (439)
                      |.+....+...+...++.+++++..|++.||+|+|+.+..+..+.+++.+.+.  .. .......++.+++.....|...
T Consensus       231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~l~g~~~~~~~p~~~  307 (381)
T PRK03633        231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ-AAMAPALFILGAAGFTLYPVAM  307 (381)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHhHHHHHH
Confidence            35555567777888889999999999999999999988887777766655443  11 1222334445555555667777


Q ss_pred             eeccccccC
Q 013655          430 VYAPEVSHR  438 (439)
Q Consensus       430 ~~~~e~~p~  438 (439)
                      +.+.|..|+
T Consensus       308 ~~~~~~~~~  316 (381)
T PRK03633        308 AWACEKVEH  316 (381)
T ss_pred             HHHHccCCH
Confidence            777777764

>TIGR00897 2A0118 polyol permease family

Probab=99.94  E-value=1.3e-24  Score=209.43  Aligned_cols=303  Identities=15%  Similarity=0.087  Sum_probs=198.8

Q ss_pred             HHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh---h-cchHHHHHH
Q 013655           47 LLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA---F-APNYYLLLF  122 (439)
Q Consensus        47 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~  122 (439)
                      ....+.+.+.+++|.|+.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+++.   . .++++.+++
T Consensus        31 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  110 (402)
T TIGR00897        31 LEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILL  110 (402)
T ss_pred             hHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHH
Confidence            333445566688999999999999999999999999999999999999999999998888766542   3 357888899


Q ss_pred             HHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHH-HHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH-H
Q 013655          123 FRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGT-ILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-Y  199 (439)
Q Consensus       123 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~-~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~-~  199 (439)
                      .|++.|++.+.. +.....+.+++|+++|++++|+.+.+.++|. .++|++++++.+.+||+..++......++..++ .
T Consensus       111 ~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  190 (402)
T TIGR00897       111 FYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIAL  190 (402)
T ss_pred             HHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence            999999998776 5566778899999999999999999999996 589999999998889766655443333333332 2


Q ss_pred             hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhc
Q 013655          200 SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEM  279 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (439)
                      ++.++.++... ++++++    .                                                         
T Consensus       191 ~~~~~~~~~~~-~~~~~~----~---------------------------------------------------------  208 (402)
T TIGR00897       191 FSNKDIFTPQH-MQTREK----F---------------------------------------------------------  208 (402)
T ss_pred             hccCCCCCccc-ccCCcc----h---------------------------------------------------------
Confidence            33333211000 000000    0                                                         


Q ss_pred             cccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhh
Q 013655          280 KSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGD  359 (439)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  359 (439)
                                   ++....++.+++++..   +...+..++....++....+.|.+..+          .|.+....+..
T Consensus       209 -------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~----------~g~s~~~~~~~  262 (402)
T TIGR00897       209 -------------SELGKAATILFTNPNV---LLGGMVRIINTIGLFGFAVFLPMFVAE----------LGFSTSEWLQI  262 (402)
T ss_pred             -------------hhHHHHHHHHHcChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCChhHHHHH
Confidence                         0000023445544432   333333444555566666777777643          33666666677


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHhh-----ccccchhhhHHHHHHhhhhheeeeeeeecc
Q 013655          360 VFITSFAEFPGLLLAAAMVDRLGRKLSMS-SMFFCCCIFLVPLLF-----QQPKGLTTGLLFGARICITVTFTVVYVYAP  433 (439)
Q Consensus       360 ~~~~~i~~~~g~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  433 (439)
                      .....++.++++++.|+++||++||+.+. .+.+.++++.+.+..     .++.+...+..++.|++.+...+. .....
T Consensus       263 ~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~  341 (402)
T TIGR00897       263 WGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFP  341 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            77788899999999999999999887653 333333332222221     123333445566666666554443 33445


Q ss_pred             ccccC
Q 013655          434 EVSHR  438 (439)
Q Consensus       434 e~~p~  438 (439)
                      |..|+
T Consensus       342 ~~~~~  346 (402)
T TIGR00897       342 TLAPK  346 (402)
T ss_pred             hhCcc
Confidence            55553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=3.9e-25  Score=220.17  Aligned_cols=323  Identities=31%  Similarity=0.477  Sum_probs=252.4

Q ss_pred             hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-
Q 013655           56 QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-  134 (439)
Q Consensus        56 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-  134 (439)
                      .+.+..+.....+..+++.+|..+|.+++|.++||+|||++++.+.++..++.++.++++|++.+++.|++.|++.+.. 
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence            3556678888899999999999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccc
Q 013655          135 PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGR  214 (439)
Q Consensus       135 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (439)
                      .+...++.|++++++|+.+..+ ......++.+++++++++..  +||+.+++..++.++.++.+++.||+|+|...+++
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~  266 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGR  266 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCc
Confidence            7788999999999999999999 77778888888888888877  89999999999998887777777899999999999


Q ss_pred             hHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccch
Q 013655          215 TAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMG  294 (439)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (439)
                      .+++.+.+++..+.++........       .+.                     .....+            .+.....
T Consensus       267 ~~~a~~~l~~~a~~n~~~~~~~~~-------~~~---------------------~~~~~~------------~~~~~~~  306 (521)
T KOG0255|consen  267 IDEAIKILKKIAKLNGRKLSVKEL-------LRL---------------------ELLLRP------------LKLLFTE  306 (521)
T ss_pred             hHHHHHHHHHHHhhcCCCCCcHHH-------HHH---------------------HHHhhH------------hhhhccC
Confidence            999888888877655221110000       000                     000000            0000000


Q ss_pred             hHHHHHHhhCh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHH
Q 013655          295 GITALLILLSP-ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLL  373 (439)
Q Consensus       295 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~  373 (439)
                      +...+.++++. +.++.++...+.++.....+|+.......+..                 ..+......+....++...
T Consensus       307 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~-----------------~~~~~~~~~~~~~~p~~~~  369 (521)
T KOG0255|consen  307 PKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGG-----------------NIYLNFTLSGLVELPAYFR  369 (521)
T ss_pred             CCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCc-----------------hHHHHHHHHHHHHhhHHHH
Confidence            11146677764 47788888888988888898888776654331                 1245566666688889999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccc---hhhhHHHHHHhhhhheeeeeeeeccccccC
Q 013655          374 AAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKG---LTTGLLFGARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       374 ~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      .+...|++|||..+..+..+..++++...+.....   ...+...+..++.+..+...+.+.+|++|+
T Consensus       370 ~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt  437 (521)
T KOG0255|consen  370 NGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT  437 (521)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence            99999999999999999999999888877654432   345556666666777777779999999986

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.94  E-value=2.4e-24  Score=207.08  Aligned_cols=169  Identities=22%  Similarity=0.209  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch
Q 013655           37 GWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN  116 (439)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~  116 (439)
                      ..+..........+..|.+.+++|.|..+.++..+.+.++..+++++.|+++||+|||+.++.+.++.+++.++..++++
T Consensus        11 ~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~   90 (392)
T PRK10473         11 LVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET   90 (392)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc
Confidence            33444455555567789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655          117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL  195 (439)
Q Consensus       117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~  195 (439)
                      ++.+++.|++.|++.+.. +...+++.|++|+++|+++.++.+....+|..++|.+++.+.+..+|+..+++.+++.++.
T Consensus        91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~  170 (392)
T PRK10473         91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILV  170 (392)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHH
Confidence            999999999999998887 6777899999999999999999999999999999999999888899999999888776665


Q ss_pred             HHH-HhcccCC
Q 013655          196 LLL-YSVTPES  205 (439)
Q Consensus       196 ~~~-~~~~~~~  205 (439)
                      .++ .+.+||+
T Consensus       171 ~~~~~~~~~~~  181 (392)
T PRK10473        171 LLLSLFILKET  181 (392)
T ss_pred             HHHHHHHcCCC
Confidence            444 4455554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.94  E-value=2.1e-25  Score=217.19  Aligned_cols=180  Identities=17%  Similarity=0.200  Sum_probs=148.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Q 013655           26 FQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS  105 (439)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  105 (439)
                      .++..++...+.+..............|.+.+ +|+|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            34555666666666666666666777787776 59999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHhhc----chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-cc
Q 013655          106 AAGLLSAFA----PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-RL  179 (439)
Q Consensus       106 ~~~~~~~~~----~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-~~  179 (439)
                      ++.++..+.    ++++.+.+.|++.|++.+.. +.....+.|++|+++||+++|+.+.+.++|..+++++.+...+ ..
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  182 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN  182 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence            888877654    46777888999999999887 6677888999999999999999999999999999988776544 46


Q ss_pred             chhHHHHHhHHHHHHHH-HHHhcccCCc
Q 013655          180 GWRWLLGLSAFPSSLLL-LLYSVTPESP  206 (439)
Q Consensus       180 g~~~~~~~~~~~~~~~~-~~~~~~~~~~  206 (439)
                      +||..|++.+++.++.. +.++++||+|
T Consensus       183 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       183 DWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            89999999888777654 4455566654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.94  E-value=1.8e-25  Score=216.58  Aligned_cols=312  Identities=15%  Similarity=0.062  Sum_probs=224.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh-----
Q 013655           38 WISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA-----  112 (439)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~-----  112 (439)
                      .+...+......+..|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+...     
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~  105 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL  105 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence            444555556667778888888999999999999999999999999999999999999998888777776655443     


Q ss_pred             hcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHH
Q 013655          113 FAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFP  191 (439)
Q Consensus       113 ~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~  191 (439)
                      ..++++.+++.|++.|++.+.. +...+.+.++.|+++|+++.++.....++|..+||.+++.+.+..+|++.+++.++.
T Consensus       106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~  185 (417)
T PRK10489        106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAG  185 (417)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            2567888999999999988876 666788899999999999999999999999999999999999888999999888877


Q ss_pred             HHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCC
Q 013655          192 SSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDED  271 (439)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (439)
                      .++..+..+.+|+.++..  +++. +.   .+                                                
T Consensus       186 ~~~~~~~~~~l~~~~~~~--~~~~-~~---~~------------------------------------------------  211 (417)
T PRK10489        186 TFITLLPLLRLPALPPPP--QPRE-HP---LR------------------------------------------------  211 (417)
T ss_pred             HHHHHHHHHhCCCCCCCC--cccc-cc---hH------------------------------------------------
Confidence            776666666666543210  0000 00   00                                                


Q ss_pred             chhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCC
Q 013655          272 SISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGK  351 (439)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  351 (439)
                                            +....++.+++++..+...+..+....    ......+.|.+..+.         .|.
T Consensus       212 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~---------~g~  256 (417)
T PRK10489        212 ----------------------SLLAGFRFLLASPVVGGIALLGGLLTM----ASAVRVLYPALADEV---------WQM  256 (417)
T ss_pred             ----------------------HHHHHHHHHHcChHHHHHHHHHHHHHH----HHhHHHhhHHHHHhc---------cCC
Confidence                                  000134444544443333322222111    223344556665431         235


Q ss_pred             CCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeee
Q 013655          352 SRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVY  431 (439)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  431 (439)
                      +....+...+...++.+++.++.+++.||.++++.+..+.++.++..+.+.+.++.+...+..++.|++.+...+...++
T Consensus       257 ~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  336 (417)
T PRK10489        257 GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTL  336 (417)
T ss_pred             ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566778888889999999999999999877777777777777776666655555555566667777776666666777


Q ss_pred             ccccccC
Q 013655          432 APEVSHR  438 (439)
Q Consensus       432 ~~e~~p~  438 (439)
                      +.|.+|+
T Consensus       337 ~~~~~p~  343 (417)
T PRK10489        337 LQTQTPD  343 (417)
T ss_pred             HHhhCCH
Confidence            8888775

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.94  E-value=5e-25  Score=215.14  Aligned_cols=346  Identities=10%  Similarity=0.029  Sum_probs=229.0

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655           23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI  102 (439)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~  102 (439)
                      .+.++|.++....+............+.+.|.+.+++|.|.++.+++.+.+.++..++.++.|+++||+|||++++.+.+
T Consensus        13 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~   92 (455)
T TIGR00892        13 DGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGL   92 (455)
T ss_pred             CCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHH
Confidence            34556766666666655544455556778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchHHHHHH-HHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655          103 VTSAAGLLSAFAPNYYLLLF-FRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG  180 (439)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g  180 (439)
                      +.+++.++++++++++.+++ .|++.|++.+.. ++....+.++++ ++|+++.|+.+.+..+|..++|++++++.+.+|
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892        93 LASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence            99999999999999888765 568999999876 666677788885 789999999999999999999999999999999


Q ss_pred             hhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCC
Q 013655          181 WRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDD  260 (439)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (439)
                      ||..|++.+++.++..+..+++.+.+...  +....+.         .++.  +.                      ++.
T Consensus       172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~---------~~~~--~~----------------------~~~  216 (455)
T TIGR00892       172 WRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS---------KEGL--PP----------------------DGS  216 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc---------cccC--CC----------------------CCc
Confidence            99999999887776655444432221100  0000000         0000  00                      000


Q ss_pred             CchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCC
Q 013655          261 TTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQN  340 (439)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (439)
                      ....   +.+        ..         .++..+...+ .+++++..+   ......+.....++....+.+.+..+  
T Consensus       217 ~~~~---~~~--------~~---------~~~~~~~~~~-~~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~~~~~--  270 (455)
T TIGR00892       217 TKKL---SKK--------ST---------AEKINRFLDF-SLFTHRGFL---VYLSGNVIMFLGFFAPIIFLVPYAKD--  270 (455)
T ss_pred             cccc---ccc--------ch---------hhhhhhhcch-HHhcCchHH---HHHHHHHHHHHHccchHHHHHHHHHH--
Confidence            0000   000        00         0000000012 233333322   22222333334444555555655533  


Q ss_pred             cccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHh--hhHHHHH--HHHHHHHHHHHHHhhccccchhhhHHHH
Q 013655          341 KCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL--GRKLSMS--SMFFCCCIFLVPLLFQQPKGLTTGLLFG  416 (439)
Q Consensus       341 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (439)
                              .+.+...++...+..+++.++++++.|++.||.  ++|+...  .+.++.+++.+.....++.+...+..++
T Consensus       271 --------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~  342 (455)
T TIGR00892       271 --------KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIF  342 (455)
T ss_pred             --------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence                    236666678888888999999999999999973  3333222  2333333444444445555555666778


Q ss_pred             HHhhhhheeeeeeeeccccccC
Q 013655          417 ARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       417 ~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      .|++.+...+..++++.|.+|+
T Consensus       343 ~G~~~g~~~~~~~~~~~~~~~~  364 (455)
T TIGR00892       343 FGLSFGSVGALLFEVLMDLVGA  364 (455)
T ss_pred             HHHHhchHHHHHHHHHHHHhhH
Confidence            8888887778888888888775

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.94  E-value=2.5e-24  Score=207.03  Aligned_cols=177  Identities=15%  Similarity=0.143  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 013655           29 CVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAG  108 (439)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  108 (439)
                      +.+++.........+......+..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.
T Consensus         8 ~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~   87 (394)
T PRK11652          8 NLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGT   87 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence            33444444444555666677777899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 013655          109 LLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGL  187 (439)
Q Consensus       109 ~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~  187 (439)
                      ++..++++++.+++.|++.|++.+.. +....+..|.+++++++++.++.+.+..+|..++|.+++++.+..|||..|++
T Consensus        88 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~  167 (394)
T PRK11652         88 LVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF  167 (394)
T ss_pred             HHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            99889999999999999999998876 55567788999999999999999999999999999999999998999999998


Q ss_pred             hHHHHHHHHH-HHhcccCC
Q 013655          188 SAFPSSLLLL-LYSVTPES  205 (439)
Q Consensus       188 ~~~~~~~~~~-~~~~~~~~  205 (439)
                      .++..++..+ ..++.||+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~  186 (394)
T PRK11652        168 LLLLGAGVTFSMARWMPET  186 (394)
T ss_pred             HHHHHHHHHHHHHHhCCcc
Confidence            8776655443 34555664

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.94  E-value=1.9e-24  Score=208.98  Aligned_cols=316  Identities=18%  Similarity=0.162  Sum_probs=216.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-----hHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHH
Q 013655           33 YAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQ-----ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAA  107 (439)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~  107 (439)
                      ..+++.+..........+++|.+.+++|.+..+     .|++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            344555666777777788889999999998655     488999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 013655          108 GLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGL  187 (439)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~  187 (439)
                      .++..+.++++.+++.|++.|++.+..+.....+.+.+|+++|+++.++...+..+|..++|.+++.+.+..+|+..|++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  177 (408)
T PRK09874         98 MVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI  177 (408)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            88888889999999999999998665566667888999999999999999999999999999999999998999999998


Q ss_pred             hHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhh
Q 013655          188 SAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEM  266 (439)
Q Consensus       188 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (439)
                      .+++.++..+. .++++++++..    ++++ ....++                                          
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~------------------------------------------  210 (408)
T PRK09874        178 TASVLFLCFLVTLFCIRENFQPV----SKKE-MLHMRE------------------------------------------  210 (408)
T ss_pred             HHHHHHHHHHHHHHHhccCcccc----cchh-hhHHHH------------------------------------------
Confidence            88777665554 34445432100    0000 000000                                          


Q ss_pred             cccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccc
Q 013655          267 ARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNE  346 (439)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (439)
                                                     ..+.+.+++.........+..   .........+.+.+..+..      
T Consensus       211 -------------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------  250 (408)
T PRK09874        211 -------------------------------VVTSLKNPKLVLSLFVTTLII---QVATGSIAPILTLYVRELA------  250 (408)
T ss_pred             -------------------------------HHHhCcCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh------
Confidence                                           111111122222121111111   1111111222232321110      


Q ss_pred             cccCCCCCC---chhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhh
Q 013655          347 LQSGKSRDI---NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITV  423 (439)
Q Consensus       347 ~~~g~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  423 (439)
                         +...+.   .+....+.+++.+++.+..|++.||+|||+.+..+..+.++..+.+.+.++.+...+..++.|++.+.
T Consensus       251 ---~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  327 (408)
T PRK09874        251 ---GNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGA  327 (408)
T ss_pred             ---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHh
Confidence               011111   23444556677888899999999999999999888887777766666555555555666677887777


Q ss_pred             eeeeeeeeccccccC
Q 013655          424 TFTVVYVYAPEVSHR  438 (439)
Q Consensus       424 ~~~~~~~~~~e~~p~  438 (439)
                      ..+...+...+..|+
T Consensus       328 ~~~~~~~~~~~~~~~  342 (408)
T PRK09874        328 LLPAVQTLLVYNSSN  342 (408)
T ss_pred             hHHHHHHHHHHhCCc
Confidence            776666655555543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.94  E-value=1.3e-24  Score=207.94  Aligned_cols=162  Identities=20%  Similarity=0.317  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 013655           44 EMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFF  123 (439)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (439)
                      ......+..|.+.+++|+|+.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM   85 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            34455678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH-Hhc
Q 013655          124 RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSV  201 (439)
Q Consensus       124 ~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~  201 (439)
                      |++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+||..|++.+++.++..+. .+.
T Consensus        86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (377)
T PRK11102         86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF  165 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998887 6777899999999999999999999999999999999999999899999998888777665444 445


Q ss_pred             ccCC
Q 013655          202 TPES  205 (439)
Q Consensus       202 ~~~~  205 (439)
                      .||+
T Consensus       166 ~~~~  169 (377)
T PRK11102        166 IPET  169 (377)
T ss_pred             CCcc
Confidence            5554

>TIGR00901 2A0125 AmpG-related permease

Probab=99.94  E-value=7.8e-25  Score=207.67  Aligned_cols=306  Identities=14%  Similarity=0.130  Sum_probs=212.6

Q ss_pred             HHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-----chhHH-HHHHHHHHHHHHHHHhhc---ch
Q 013655           46 MLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-----GRRKG-FLITAIVTSAAGLLSAFA---PN  116 (439)
Q Consensus        46 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----G~r~~-~~~~~~~~~~~~~~~~~~---~~  116 (439)
                      ...++..|.+.+++|+|.++.|+.... .+...+ .+++|+++||+     ||||. ++.+.++.+++..+.++.   .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            455677889999999999999999755 444444 89999999998     89887 466777777776666666   45


Q ss_pred             HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--------hhHHHHH
Q 013655          117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG--------WRWLLGL  187 (439)
Q Consensus       117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g--------~~~~~~~  187 (439)
                      .+.+....++.+++.+.. ++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+..+        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            666777777778777777 6777999999999999999999999999999999999999988888        9999999


Q ss_pred             hHHHHHHHHHHHhc-ccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhh
Q 013655          188 SAFPSSLLLLLYSV-TPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEM  266 (439)
Q Consensus       188 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (439)
                      .+++.++..+..++ .||+++.   +...++..   ++                                          
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~---~~------------------------------------------  194 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQED---ASVPKPLT---QA------------------------------------------  194 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCcc---cccchhHH---HH------------------------------------------
Confidence            88877776555443 4443110   00000000   00                                          


Q ss_pred             cccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccc
Q 013655          267 ARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNE  346 (439)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (439)
                                                  ....++++++++..+..+...+..++....++....+.+.+..+        
T Consensus       195 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------  238 (356)
T TIGR00901       195 ----------------------------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD--------  238 (356)
T ss_pred             ----------------------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence                                        00134445544432233333333444445555555566666533        


Q ss_pred             cccCCCCCCchhhHHHHh-hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-----------cccchhhhHH
Q 013655          347 LQSGKSRDINYGDVFITS-FAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ-----------QPKGLTTGLL  414 (439)
Q Consensus       347 ~~~g~~~~~~~~~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~  414 (439)
                        .|.+.+..+......+ +..++|.+++|++.||+|||+.+..+.++.++....+.+.           ++.+......
T Consensus       239 --~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (356)
T TIGR00901       239 --MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTI  316 (356)
T ss_pred             --cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHH
Confidence              2355555555555444 5678999999999999999998888887777665544332           1223344455


Q ss_pred             HHHHhhhhheeeeeeeeccccccCC
Q 013655          415 FGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       415 ~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      ++.+++.+...+...++..|.+|++
T Consensus       317 ~l~~~~~~~~~~~~~~~~~~~~p~~  341 (356)
T TIGR00901       317 TLEAVTGGLGTVAFVAFLSKLSNPK  341 (356)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCC
Confidence            6668888888899999999999975

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.94  E-value=2.7e-24  Score=206.59  Aligned_cols=313  Identities=22%  Similarity=0.266  Sum_probs=212.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhcC--CCchhhHHHHHH-----HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh
Q 013655           40 SEAMEMMLLSFVGPAVQSLWH--LSPNQESLITSV-----VFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA  112 (439)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~-----~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~  112 (439)
                      ...++.+..++..+.+.+++.  .+..+.+.+.+.     ..++..+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   83 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            456667777777777777654  445555554443     3344457889999999999999999999999999999999


Q ss_pred             hcchHH--------HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-------
Q 013655          113 FAPNYY--------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-------  176 (439)
Q Consensus       113 ~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~-------  176 (439)
                      ++++++        .+++.|++.|++.+.. +....++.|+.++++|++..++...+..+|..+++.+...+.       
T Consensus        84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~  163 (394)
T TIGR00883        84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA  163 (394)
T ss_pred             hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            988865        4788999999999888 777789999999999999999999999999999998876653       


Q ss_pred             -cccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCC
Q 013655          177 -PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSS  255 (439)
Q Consensus       177 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (439)
                       +.++||..|++.+++.++..+.....+|+++....+                ++.+..                     
T Consensus       164 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~---------------------  206 (394)
T TIGR00883       164 LLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ----------------EKHKKK---------------------  206 (394)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH----------------hccccc---------------------
Confidence             357899999887776666555544455543210000                000000                     


Q ss_pred             CCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 013655          256 SNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL  335 (439)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (439)
                                                              ..++++.++++. +.++......+.....++....+.|.+
T Consensus       207 ----------------------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (394)
T TIGR00883       207 ----------------------------------------RGPIRETLTKHR-KPFLLGLGLVIATTTTFYLITTYLPTY  245 (394)
T ss_pred             ----------------------------------------cCCHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                    001222332221 223333334444444555555666666


Q ss_pred             hcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHH-hh--ccccchhh
Q 013655          336 NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFL-VPL-LF--QQPKGLTT  411 (439)
Q Consensus       336 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~-~~~-~~--~~~~~~~~  411 (439)
                      ..+         +.+.+....+.......+...++.++.|++.||+|||+.+..+..+..+.. ..+ ..  .++.+...
T Consensus       246 ~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (394)
T TIGR00883       246 LTQ---------TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFF  316 (394)
T ss_pred             HHH---------hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            532         123555566777778888999999999999999999997765544443322 222 22  23334444


Q ss_pred             hHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          412 GLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       412 ~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      ...++.+++.+...+...++++|.+|++
T Consensus       317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~  344 (394)
T TIGR00883       317 FLVLGLALIGGMYTGPMGSFLPELFPTE  344 (394)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhCCcc
Confidence            5556677777777888889999999864

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.93  E-value=6.1e-24  Score=204.99  Aligned_cols=172  Identities=17%  Similarity=0.110  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh
Q 013655           34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF  113 (439)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  113 (439)
                      +.+..+..........+.+|.+.++++.+..+.++..+++.+++.+++++.|+++||+|||++++.+.++.+++.+++.+
T Consensus        21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  100 (413)
T PRK15403         21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF  100 (413)
T ss_pred             HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            34444555666677778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655          114 APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS  192 (439)
Q Consensus       114 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~  192 (439)
                      +++++.++++|+++|++.+.. +....++.|++|+++|++++++...+..+|..++|.+++.+.+..|||..|++.++..
T Consensus       101 a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~  180 (413)
T PRK15403        101 TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMG  180 (413)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999999999998765 4555778899999999999999999999999999999999998889999999988877


Q ss_pred             HHHHHH-HhcccCC
Q 013655          193 SLLLLL-YSVTPES  205 (439)
Q Consensus       193 ~~~~~~-~~~~~~~  205 (439)
                      ++..+. .+.+||+
T Consensus       181 ~i~~~~~~~~lp~~  194 (413)
T PRK15403        181 LIAFVGLLLAMPET  194 (413)
T ss_pred             HHHHHHHHHhCCCC
Confidence            776554 4456765

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=3.7e-24  Score=205.34  Aligned_cols=311  Identities=12%  Similarity=0.061  Sum_probs=212.9

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc
Q 013655           36 MGWISEAMEMMLLSFVG-PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA  114 (439)
Q Consensus        36 ~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~  114 (439)
                      +..++.........+++ +++.+++|+|..+.|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++..+.
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            34455555555555544 45667899999999999999999999999999999999999999999999999999889999


Q ss_pred             chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHH
Q 013655          115 PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSS  193 (439)
Q Consensus       115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~  193 (439)
                      ++++.+++++++.|.+.+.. +...++..|..|+++|++++|+.....++|..++|++++++.+ .+|+..|++.+++.+
T Consensus        94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~  172 (395)
T PRK10054         94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSA  172 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHH
Confidence            99999988898888776666 6677888999999999999999999999999999999999875 799999998887777


Q ss_pred             HHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCc
Q 013655          194 LLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS  272 (439)
Q Consensus       194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (439)
                      +..+. .+++|++++.    ++.++ .+   .                                                
T Consensus       173 i~~i~~~~~~~~~~~~----~~~~~-~~---~------------------------------------------------  196 (395)
T PRK10054        173 FPLVFIQIWVQRSEKA----IATET-GS---V------------------------------------------------  196 (395)
T ss_pred             HHHHHHHHHHhccccc----cccch-hh---h------------------------------------------------
Confidence            66444 3445544210    00000 00   0                                                


Q ss_pred             hhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCC
Q 013655          273 ISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL-LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGK  351 (439)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  351 (439)
                                             + ..+.+++++..+.... .++..+.    +.....+.+.+.....       +.+.
T Consensus       197 -----------------------~-~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~-------~~~~  241 (395)
T PRK10054        197 -----------------------W-SPSVLLQDKALLWFTCSGFLASFV----SGAFASCISQYVMVVA-------DSDF  241 (395)
T ss_pred             -----------------------h-hhhhhccCceehHHHHHHHHHHHH----HHHhhhhHHHHHHHhc-------ccch
Confidence                                   0 1122233222222222 2221111    1111112222221100       1223


Q ss_pred             CCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-cccchhhhHHHHHHhhhhheeeeeee
Q 013655          352 SRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ-QPKGLTTGLLFGARICITVTFTVVYV  430 (439)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~  430 (439)
                      +....+.......+..+...+..|.+.||.++|+.+..+..+.++..+.+.+. ++.+...+...+.+++.+...|....
T Consensus       242 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~  321 (395)
T PRK10054        242 AEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYM  321 (395)
T ss_pred             HHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            33334566667767777778889999999999999888887777776666543 34444455667777777776677666


Q ss_pred             eccccccC
Q 013655          431 YAPEVSHR  438 (439)
Q Consensus       431 ~~~e~~p~  438 (439)
                      .+.+..|+
T Consensus       322 ~~~~~~p~  329 (395)
T PRK10054        322 LIDHIAPP  329 (395)
T ss_pred             HHHHhCCc
Confidence            77776665

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.93  E-value=5.2e-26  Score=208.35  Aligned_cols=182  Identities=20%  Similarity=0.281  Sum_probs=167.5

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Q 013655           24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV  103 (439)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~  103 (439)
                      .+..+..+.++++....+.++.+.+....+.+.+.+|++++..|++.+.+.+.+.+++|++|+++||+.||+++.+|..+
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i  107 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI  107 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence            34456667778888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-h
Q 013655          104 TSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-W  181 (439)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~  181 (439)
                      +.++.++.+++..+|+++++|.+.|+|.+.+ +..+++++|.+|..+|++++++++.+..+|..+|.+.+..+.+..+ |
T Consensus       108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W  187 (493)
T KOG1330|consen  108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW  187 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence            9999999999999999999999999999999 8899999999999999999999999999999999999998887766 9


Q ss_pred             hHHHHHhHHHHHHHHHHH-hcccCC
Q 013655          182 RWLLGLSAFPSSLLLLLY-SVTPES  205 (439)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~-~~~~~~  205 (439)
                      |+.|...+++.++..++. ++.+|+
T Consensus       188 r~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  188 RWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             EEEEEeehHHHHHHHHHHHhhccCc
Confidence            999999999998876664 445554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=2.6e-23  Score=199.89  Aligned_cols=296  Identities=12%  Similarity=0.050  Sum_probs=205.3

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG  128 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  128 (439)
                      ++..+++.+++|+|..+.|++.+...+...+.++++|+++||+|||+++..+.++.+++.+++.+.++++.+++.|++.|
T Consensus        31 ~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g  110 (400)
T PRK11646         31 PLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSG  110 (400)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            33444667899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH-HhcccCCc
Q 013655          129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTPESP  206 (439)
Q Consensus       129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~  206 (439)
                      ++.+.. +...+++.+++|+++|++++|+.....++|..+||.+++++. .+||+..|++.++..++..++ .+..|+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~  189 (400)
T PRK11646        111 LGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYK  189 (400)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            998877 667788999999999999999999999999999999999998 689999999887776655433 33444321


Q ss_pred             hhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccch
Q 013655          207 RYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTS  286 (439)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (439)
                      .    +...++.                                                                    
T Consensus       190 ~----~~~~~~~--------------------------------------------------------------------  197 (400)
T PRK11646        190 L----STVRTPV--------------------------------------------------------------------  197 (400)
T ss_pred             c----cccchhh--------------------------------------------------------------------
Confidence            0    0000000                                                                    


Q ss_pred             hhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhh
Q 013655          287 TLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFA  366 (439)
Q Consensus       287 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~  366 (439)
                               ..+++.+++++............   ...+.....+.|.+..+.          +.+....+......++.
T Consensus       198 ---------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~----------~~~~~~~g~l~~~~~~~  255 (400)
T PRK11646        198 ---------REGMTRVLRDKRFVTYVLTLTGY---YMLAVQVMLMLPIMVNDI----------AGSPSAVKWMYAIEACL  255 (400)
T ss_pred             ---------HHHHHHHHcCchHHHHHHHHHHH---HHHHHHHHHhhhhhHHhh----------cCCchHHHHHHHHHHHH
Confidence                     00333344433222222221111   111112234456555332          23444445555666665


Q ss_pred             hhhHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          367 EFPGLLLAAAMV-DRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       367 ~~~g~~~~g~l~-dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      ...+....+++. ||++.++.+..+..+.+++.+.+...++.+...+...+.+.+.+...|...++..+..|++
T Consensus       256 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~  329 (400)
T PRK11646        256 SLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADAR  329 (400)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcc
Confidence            555554445555 4566566666777677776666655555544445556667777777777788888888753

>TIGR00896 CynX cyanate transporter

Probab=99.93  E-value=3.1e-24  Score=203.40  Aligned_cols=292  Identities=19%  Similarity=0.182  Sum_probs=206.0

Q ss_pred             HHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 013655           46 MLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRC  125 (439)
Q Consensus        46 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (439)
                      ...++.+|.+.+++|+|..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+.. ..++++.+++.|+
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~   95 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA   95 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence            445678899999999999999999999999999999999999999999999999998888877776 6788999999999


Q ss_pred             HHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc--chhHHHHHhHHHHHHHHHHHhcc
Q 013655          126 LVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL--GWRWLLGLSAFPSSLLLLLYSVT  202 (439)
Q Consensus       126 l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~  202 (439)
                      +.|++.+.. ......+.++++ ++|++++++.+.+.++|..+++.+.+.+.+..  +||..|...++..++...  .++
T Consensus        96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~  172 (355)
T TIGR00896        96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWI  172 (355)
T ss_pred             HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHh
Confidence            999998876 555667778775 68999999999999999999999999887765  399888776655443322  223


Q ss_pred             cCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhcccc
Q 013655          203 PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSE  282 (439)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (439)
                      |+.++      +.++             ++ +.                                            .  
T Consensus       173 ~~~~~------~~~~-------------~~-~~--------------------------------------------~--  186 (355)
T TIGR00896       173 PQVRR------RVAA-------------NQ-TT--------------------------------------------T--  186 (355)
T ss_pred             hhhcc------ccCC-------------CC-CC--------------------------------------------C--
Confidence            33210      0000             00 00                                            0  


Q ss_pred             ccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHH
Q 013655          283 DSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFI  362 (439)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  362 (439)
                      +             ...+++++++..+   ...+..++....++....+.|.+..+          .|.+....+...+.
T Consensus       187 ~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lp~~~~~----------~g~~~~~~g~~~~~  240 (355)
T TIGR00896       187 R-------------LTPVRIWRSPLAW---QVTVFFGLQSGLYYSLIGWLPAILIS----------HGASAATAGSLLAL  240 (355)
T ss_pred             C-------------CCCchhhcCHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHHH
Confidence            0             0111223332222   22222333444555566667766643          23666667888888


Q ss_pred             HhhhhhhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeeccc
Q 013655          363 TSFAEFPGLLLAAAMVDRL-GRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPE  434 (439)
Q Consensus       363 ~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e  434 (439)
                      ..++.++++++.|++.||+ +||..+..+.++.+++.+.+.+..+.... ...++.|++.+..++...+...+
T Consensus       241 ~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~  312 (355)
T TIGR00896       241 MQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFPLALTLIGL  312 (355)
T ss_pred             HHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHHHHHHHH
Confidence            9999999999999999999 56667777777777766655554332222 24566788887777765554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.93  E-value=2.1e-29  Score=246.75  Aligned_cols=344  Identities=29%  Similarity=0.455  Sum_probs=232.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHh--hhcCCC---------chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Q 013655           37 GWISEAMEMMLLSFVGPAVQ--SLWHLS---------PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS  105 (439)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~--~~~~~s---------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  105 (439)
                      +.+..+++....++..+...  ..++.+         ..+.++..+...++..+|++++|+++||+|||+.+.++.++..
T Consensus         8 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~   87 (451)
T PF00083_consen    8 GGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMI   87 (451)
T ss_pred             HHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence            34555666655555444333  222222         2356889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcc---hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc---
Q 013655          106 AAGLLSAFAP---NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR---  178 (439)
Q Consensus       106 ~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~---  178 (439)
                      ++.++..+++   +++.+.++|++.|++.|.. .....++.|..|+++||+..++.+.+..+|..++..++..+.+.   
T Consensus        88 i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~  167 (451)
T PF00083_consen   88 IGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDN  167 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999   9999999999999999998 77889999999999999999999999999998888777655433   


Q ss_pred             cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCC
Q 013655          179 LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNE  258 (439)
Q Consensus       179 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (439)
                      .+||..+.+.+++.++..+...++||+|+|...+++.+++++..++.++.+..+           ++.++++        
T Consensus       168 ~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~-----------~~~~~~~--------  228 (451)
T PF00083_consen  168 WGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIED-----------EEIEEIK--------  228 (451)
T ss_pred             ccccccccccccccccccccccccccccceeccccccccccccccccccccccc-----------ccccccc--------
Confidence            349999999999988887778889999999998888888777666543211100           0000000        


Q ss_pred             CCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHH-HHHHHHHHHHHHHHHHh-hhHHHHHHHHhh
Q 013655          259 DDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPEL-IKSTLLLWLVFFGNAFS-YYGLVLLTTELN  336 (439)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  336 (439)
                                  ++.+++++.               + .+++++++++. ++.+...+......... ++....+.+.+.
T Consensus       229 ------------~~~~~~~~~---------------~-~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~  280 (451)
T PF00083_consen  229 ------------AEKKESQES---------------K-ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIF  280 (451)
T ss_pred             ------------ccccccccc---------------c-eeeeeccccccccccccccccccccccccccccccccccccc
Confidence                        000000000               0 15666665432 33444433333333222 223333334433


Q ss_pred             cCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh--h---ccc----c
Q 013655          337 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL--F---QQP----K  407 (439)
Q Consensus       337 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~--~---~~~----~  407 (439)
                      ..          .+.+..  ........+...++.+++.+++||+|||+.+..+..+++++.+.+.  .   .+.    .
T Consensus       281 ~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (451)
T PF00083_consen  281 EN----------AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWS  348 (451)
T ss_pred             cc----------cccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            22          223333  3344455567778888888999999999999988888877766553  1   111    1


Q ss_pred             chhhhHHHHHHhhhh-heeeeeeeeccccccCC
Q 013655          408 GLTTGLLFGARICIT-VTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       408 ~~~~~~~~~~g~~~~-~~~~~~~~~~~e~~p~~  439 (439)
                      .....+..+...+.+ +..+..+.+.+|++|++
T Consensus       349 ~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~  381 (451)
T PF00083_consen  349 ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTK  381 (451)
T ss_pred             cccceeeeecccccccccccccccccccccccc
Confidence            222222333323333 55688889999999975

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.92  E-value=3.2e-23  Score=199.04  Aligned_cols=275  Identities=23%  Similarity=0.348  Sum_probs=215.1

Q ss_pred             hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhccCcc-
Q 013655           58 LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP--NYYLLLFFRCLVGLGLGGG-  134 (439)
Q Consensus        58 ~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~-  134 (439)
                      ++++|..+.+++.+.+++|+.+++++.|+++||+|.|+++..+.++.+++.++.+++.  +++.+++.|+++|++.|.. 
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~  146 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF  146 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence            5789999999999999999999999999999999999999999999999999998875  4567899999999999998 


Q ss_pred             hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHhHHHHHHHHHHHhcc-cCCchhhhhc
Q 013655          135 PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-LGWRWLLGLSAFPSSLLLLLYSVT-PESPRYLCLK  212 (439)
Q Consensus       135 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  212 (439)
                      ++...+..+|.|+++|++..++..++..+|.+++.+++|++.+. +||+..|++.++..++..++++++ .|+|...  +
T Consensus       147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h--~  224 (466)
T KOG2532|consen  147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH--P  224 (466)
T ss_pred             hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC--C
Confidence            88889999999999999999999999999999999999999998 999999999999999887775544 5555321  1


Q ss_pred             cchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhcccc
Q 013655          213 GRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSN  292 (439)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (439)
                      .-.++   +++.+.+...++.                                            .            + 
T Consensus       225 ~is~~---El~~I~~~k~~~~--------------------------------------------~------------~-  244 (466)
T KOG2532|consen  225 NISEK---ELKYIEKGKSEAH--------------------------------------------V------------K-  244 (466)
T ss_pred             CCCHH---HHHHHHhcccccc--------------------------------------------c------------C-
Confidence            11111   1112211000000                                            0            0 


Q ss_pred             chhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHH
Q 013655          293 MGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLL  372 (439)
Q Consensus       293 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~  372 (439)
                      +.+..+++.+++.+-.   +..++..++....++.+..+.|.|..+.         .+++....++..++..+...+..+
T Consensus       245 ~~~~vP~~~i~ts~~v---wai~~~~f~~~~~~~~l~~y~PtY~~~V---------L~f~v~~~G~~salP~l~~~~~k~  312 (466)
T KOG2532|consen  245 KKPPVPYKAILTSPPV---WAIWISAFGGNWGFYLLLTYLPTYLKEV---------LGFDVRETGFLSALPFLAMAIVKF  312 (466)
T ss_pred             CCCCCCHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHH---------hCCChhhhhHHHHHHHHHHHHHHH
Confidence            0012388889987544   5556666677777777888888888653         347777889999999999999999


Q ss_pred             HHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHhhccc
Q 013655          373 LAAAMVDRLGR---------KLSMSSMFFCCCIFLVPLLFQQP  406 (439)
Q Consensus       373 ~~g~l~dr~gr---------r~~~~~~~~~~~~~~~~~~~~~~  406 (439)
                      ++|.++||+-+         |..-.++....+++++.+.+.+.
T Consensus       313 ~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~  355 (466)
T KOG2532|consen  313 VAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD  355 (466)
T ss_pred             HHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC
Confidence            99999998744         44456777777777777776553

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.92  E-value=3e-23  Score=198.53  Aligned_cols=310  Identities=12%  Similarity=0.012  Sum_probs=219.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHH----HHHHHHHHHHHH
Q 013655           34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGF----LITAIVTSAAGL  109 (439)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~----~~~~~~~~~~~~  109 (439)
                      +.+.++..........+++|.+.+++|.|..++|++.+.+.+...++++++|.++||+||+...    ..+..+..+  .
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence            3445666666677888889999999999999999999999999999999999999999985433    222222221  2


Q ss_pred             HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655          110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS  188 (439)
Q Consensus       110 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~  188 (439)
                      ....+++++.+++.|++.|.+.+.. +...++..++  .++|++.+|....+.++|.+++|++++++.+.+|||..|.+.
T Consensus        87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            3346788999999999999887776 6666665553  477899999999999999999999999999999999998877


Q ss_pred             HHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcc
Q 013655          189 AFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMAR  268 (439)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (439)
                      ++..++..+ .+.++++++.   +++.++ .           +                                     
T Consensus       165 ~~~~~~~~~-~~~~~~~~~~---~~~~~~-~-----------~-------------------------------------  191 (382)
T TIGR00902       165 TAGLAFMLI-GFLIKPTIPP---KDAIPE-D-----------E-------------------------------------  191 (382)
T ss_pred             HHHHHHHHH-HHHcCCCCCC---Cccccc-c-----------c-------------------------------------
Confidence            655333332 2233332100   000000 0           0                                     


Q ss_pred             cCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccc
Q 013655          269 DEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQ  348 (439)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (439)
                              .   .             ...+.+++++++..+...+..++.   ...+.....+.+.+..+          
T Consensus       192 --------~---~-------------~~~~~~~~l~~~~~~~~l~~~~l~---~~~~~~~~~~~~~~l~~----------  234 (382)
T TIGR00902       192 --------S---Q-------------GDSAFIALLKNPMNLRFLAAVCLI---QGAHAAYYGFSAIYWQA----------  234 (382)
T ss_pred             --------c---c-------------cchhHHHHHcChHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----------
Confidence                    0   0             000344556555444443333322   22233333345555533          


Q ss_pred             cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeee
Q 013655          349 SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVV  428 (439)
Q Consensus       349 ~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  428 (439)
                      .|.+....+.......++.+++.++.+++.||+|+|+.+..+.+..++..+.+.+.++.+......++-++..+...+..
T Consensus       235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~  314 (382)
T TIGR00902       235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAA  314 (382)
T ss_pred             CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677677788888889999999999999999999999999999999998888877777777777888888888888877


Q ss_pred             eeeccccccC
Q 013655          429 YVYAPEVSHR  438 (439)
Q Consensus       429 ~~~~~e~~p~  438 (439)
                      ..++.+. |+
T Consensus       315 ~~~i~~~-~~  323 (382)
T TIGR00902       315 MRYIAAQ-PG  323 (382)
T ss_pred             HHHHHhC-CH
Confidence            7777766 54

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.92  E-value=5.2e-23  Score=197.60  Aligned_cols=167  Identities=16%  Similarity=0.183  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHH-HHHHHHHHHHHhhhhcchhHHH-HHHHHHHHHHHHHHhhc
Q 013655           38 WISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFA-GMLVGAYSWGIVSDNFGRRKGF-LITAIVTSAAGLLSAFA  114 (439)
Q Consensus        38 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~~-~~~~~~~~~~~~~~~~~  114 (439)
                      .++.........+.+| ++.+++|.|+++.|++.+...+ +..++.+++++ +||+||||.+ ..+.++.+++..+.+++
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~  102 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN  102 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence            4455555554455444 4678899999999999876655 55555555555 9999999875 45556666777777888


Q ss_pred             chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCch--hhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHH
Q 013655          115 PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNR--GFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFP  191 (439)
Q Consensus       115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r--g~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~  191 (439)
                      ++++.+++.+.+.|...+.. +....+..++.+++.|  +...++.+.+.++|.+++|++++++.+.+|||..|+..++.
T Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~  182 (393)
T PRK15011        103 RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVA  182 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence            88988766655444333344 5566777777666544  34557888999999999999999999999999999988877


Q ss_pred             HHHHHHH-HhcccCC
Q 013655          192 SSLLLLL-YSVTPES  205 (439)
Q Consensus       192 ~~~~~~~-~~~~~~~  205 (439)
                      .++..+. ++++||.
T Consensus       183 ~~~~~~~~~~~~~~~  197 (393)
T PRK15011        183 FIVCGVMVWLFLPSM  197 (393)
T ss_pred             HHHHHHHHHhhcCcc
Confidence            6665444 4556665

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.92  E-value=4.7e-24  Score=194.74  Aligned_cols=358  Identities=22%  Similarity=0.313  Sum_probs=248.3

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C-------CCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 013655           24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLW-H-------LSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK   95 (439)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~   95 (439)
                      .+++...+.+..++++...++.+.++.+.|.+...+ |       +++...+.+..+..+|.++|+++.|++.||+|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            456677788888999999999999999888776543 2       55677889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcc-------hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Q 013655           96 GFLITAIVTSAAGLLSAFAP-------NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTIL  167 (439)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i  167 (439)
                      ++...++++.++.+++++..       -.+.+.+.|++.|+|.|+- |...+..+|..-.++||...+.+....+.|...
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            99999999999988776642       1467889999999999999 767788899999999999998877777777776


Q ss_pred             HHHHHHHhhc----c-----------cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCC
Q 013655          168 EAGIAWLVMP----R-----------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTK  232 (439)
Q Consensus       168 ~~~l~~~l~~----~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (439)
                      |.+++-.+..    .           .=||..+.+.+++.+..+...+..||++++..-..++.+..  ..+    ..++
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a--~~d----~~k~  269 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQA--AGD----MKKV  269 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhh--hhc----cccc
Confidence            6666554421    1           12999999999998888888888899876542211111100  000    0000


Q ss_pred             CCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHH
Q 013655          233 LPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTL  312 (439)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  312 (439)
                      .+.     +.+++.+.                     +.+.+.              ++...  -.+...+..+..+..+
T Consensus       270 ~~~-----~~~~~~~~---------------------~~~~~~--------------~~~~~--~~F~~~f~~~hg~~Ll  307 (538)
T KOG0252|consen  270 LSV-----DIEAESTA---------------------ESDVPP--------------PSNSF--GLFSRLFLRWHGKHLL  307 (538)
T ss_pred             ccc-----ccchhhcc---------------------ccCCCC--------------ccccc--chHHHHHHHHHHHHHH
Confidence            000     00000000                     000000              00000  0233334333567788


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCc---------hhhHHHHhhhhhhHHHHHHHHHHHhhh
Q 013655          313 LLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN---------YGDVFITSFAEFPGLLLAAAMVDRLGR  383 (439)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------~~~~~~~~i~~~~g~~~~g~l~dr~gr  383 (439)
                      ..+..||...+.+|...++...+....+          ..+...         -....+.....++|..+...++|++||
T Consensus       308 gt~~~WFllDiafy~~nL~~s~I~~~ig----------~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGR  377 (538)
T KOG0252|consen  308 GTAGTWFLLDIAFYGQNLFQSVIFSAIG----------VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGR  377 (538)
T ss_pred             HHHHHHHhhhhhhhccccHHHHHHHhhc----------cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhh
Confidence            8899999999999999999888875432          222222         223334445566788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccc-----cchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          384 KLSMSSMFFCCCIFLVPLLFQQP-----KGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       384 r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      +++.+.+++++++..+.+....+     ....+...+...++..+.......+.+|.||++
T Consensus       378 k~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar  438 (538)
T KOG0252|consen  378 KYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR  438 (538)
T ss_pred             HHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence            99999999999999888875443     122223333444556677788999999999974

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.92  E-value=2.8e-22  Score=193.16  Aligned_cols=314  Identities=16%  Similarity=0.064  Sum_probs=210.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-----chhH-HHHHHHHHHHHHH
Q 013655           35 GMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-----GRRK-GFLITAIVTSAAG  108 (439)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----G~r~-~~~~~~~~~~~~~  108 (439)
                      ...++.++.........+|.+.++.|+|.+++|++..+...  .+..+++|+++||+     |||| .+..+.++.+++.
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            34567778888888888999999999999999999777766  58899999999999     8765 6788888888777


Q ss_pred             HHHhhc---chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhH
Q 013655          109 LLSAFA---PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-LGWRW  183 (439)
Q Consensus       109 ~~~~~~---~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-~g~~~  183 (439)
                      .+..+.   .+++.+.+..++.+++.+.. ++..+++.|+.|+++|+++.++...+.++|..+++.+++++.+. .|||.
T Consensus        83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~  162 (402)
T PRK11902         83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN  162 (402)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence            777776   35777777777777777777 77789999999999999999999999999999999999999885 59999


Q ss_pred             HHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCch
Q 013655          184 LLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP  263 (439)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (439)
                      .|++.++..++..+..++.||+++..   ++.++..+   +                                       
T Consensus       163 ~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~~---~---------------------------------------  197 (402)
T PRK11902        163 TYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSLGE---A---------------------------------------  197 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcccc---cccchhHH---H---------------------------------------
Confidence            99998887766655555566543210   00000000   0                                       


Q ss_pred             hhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccc
Q 013655          264 KEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCV  343 (439)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (439)
                                                     ....++++++++..+..+...+.+.......+.  ...+.+.+      
T Consensus       198 -------------------------------~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~~l~~------  238 (402)
T PRK11902        198 -------------------------------VVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGS--LSTTFLIR------  238 (402)
T ss_pred             -------------------------------HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHH--HHHHHHHH------
Confidence                                           001455566655544444433332221111111  11122221      


Q ss_pred             ccccccCCCCCCchhhHHHHh-hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---hhc-cccchhhhHH----
Q 013655          344 SNELQSGKSRDINYGDVFITS-FAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPL---LFQ-QPKGLTTGLL----  414 (439)
Q Consensus       344 ~~~~~~g~~~~~~~~~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~----  414 (439)
                          +.|.+.+..+......+ ++.++|.++++++.||+|+|+.+..+..+..+..+.+   ... ++.+......    
T Consensus       239 ----~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  314 (402)
T PRK11902        239 ----GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIEN  314 (402)
T ss_pred             ----hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence                13355555555554433 4678999999999999999988776666655543333   232 2323333222    


Q ss_pred             HHHHhhhhheeeeeeeeccccccC
Q 013655          415 FGARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       415 ~~~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      +..+++.+...+....++.+.+|.
T Consensus       315 ~~~g~~~~~~~~~~~~~~~~~~~~  338 (402)
T PRK11902        315 LCGGMGTAAFVALLMALCNRSFSA  338 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcH
Confidence            344555666667777777777664

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.92  E-value=8.3e-23  Score=195.50  Aligned_cols=304  Identities=11%  Similarity=0.003  Sum_probs=205.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchh----HHHHHHHHHHHHHHHHHhh
Q 013655           38 WISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRR----KGFLITAIVTSAAGLLSAF  113 (439)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r----~~~~~~~~~~~~~~~~~~~  113 (439)
                      ++..........+++|.+.+++|.|..++|++.+++.++..++++++|+++||+|||    +.+.++..+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            344445566777888888899999999999999999999999999999999999984    3332222221  2223344


Q ss_pred             cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655          114 APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS  192 (439)
Q Consensus       114 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~  192 (439)
                      .+++|.+++.|++.|++.+.. +...++..++  .++|+++.+....+.++|..+||++++++.+++|||..|++.++..
T Consensus        91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~  168 (382)
T PRK11128         91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGV  168 (382)
T ss_pred             cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence            578999999999999988777 6655666665  4568888999999999999999999999999999999998777655


Q ss_pred             HHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCc
Q 013655          193 SLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS  272 (439)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (439)
                      ++..+..++.||.++    +++.++.                                                      
T Consensus       169 ~~~~~~~~~~~~~~~----~~~~~~~------------------------------------------------------  190 (382)
T PRK11128        169 ASMLLGQLLRPTIMP----QGESRQQ------------------------------------------------------  190 (382)
T ss_pred             HHHHHHHHccCCCCC----ccccccc------------------------------------------------------
Confidence            544443333333210    0000000                                                      


Q ss_pred             hhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCC
Q 013655          273 ISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKS  352 (439)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  352 (439)
                            .++             ...+++++++++..+......+...   ..+.....+.+.+..+          .|.+
T Consensus       191 ------~~~-------------~~~~~~~i~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~----------~g~s  238 (382)
T PRK11128        191 ------ESA-------------GWPAWKALLKEPTVWRFLLCVSLLQ---GSHAAYYGFSAIYWQA----------AGYS  238 (382)
T ss_pred             ------ccc-------------ccchHHHHHcChhHHHHHHHHHHHH---HHhHhHHHHHHHHHHH----------CCCC
Confidence                  000             0004556666554443333222221   1122222233334322          3366


Q ss_pred             CCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeec
Q 013655          353 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYA  432 (439)
Q Consensus       353 ~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  432 (439)
                      ....+.......++.+++.++.+++.||+|+|+.+..+....++..+.+...++.+...+..++.|++.+...+....+.
T Consensus       239 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  318 (382)
T PRK11128        239 ASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYI  318 (382)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65667777788888899999999999999999999988888888777776666666666677777877776666555555


Q ss_pred             ccc
Q 013655          433 PEV  435 (439)
Q Consensus       433 ~e~  435 (439)
                      .+.
T Consensus       319 ~~~  321 (382)
T PRK11128        319 AAR  321 (382)
T ss_pred             HHC
Confidence            444

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.5e-23  Score=203.75  Aligned_cols=372  Identities=16%  Similarity=0.066  Sum_probs=255.6

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655           23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI  102 (439)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~  102 (439)
                      -.-+.|.+.+...+..+.........+.+.+.+.++++.+.++++|+.++......+.+|+.+.+.||+|.|.+.+.|.+
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            44567777777666666665556666778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchHHHHHHHH-HHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655          103 VTSAAGLLSAFAPNYYLLLFFR-CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG  180 (439)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g  180 (439)
                      +.+++.++.++++++|.+++.. ++.|+|.|.. .+....+. .+.+++|+.+.|+...+.++|.++-|++..++.+.+|
T Consensus       120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G  198 (509)
T KOG2504|consen  120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG  198 (509)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence            9999999999999999888766 8889999998 44444445 5567889999999999999999999999999999999


Q ss_pred             hhHHHHHhHHHHHHHHHHHhcccC-CchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCC
Q 013655          181 WRWLLGLSAFPSSLLLLLYSVTPE-SPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNED  259 (439)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (439)
                      ||..+++.+.+.+-.++....+++ .+.... +  .++..+.       ....         .+......+  ...+..+
T Consensus       199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~-~--~~~~~~~-------~~~~---------~~~~~~~~~--~~~~~~~  257 (509)
T KOG2504|consen  199 WRGALLIFGGISLNVLVAGALLRPLSPPKKP-N--EEKDLRN-------SAAS---------VESTPKPVE--LRISERD  257 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCc-h--hhhhhcc-------cccc---------ccccccccc--cccccCC
Confidence            999999988887766655444433 322111 1  0000000       0000         000000000  0000000


Q ss_pred             CCchhhhcccCCchhHhhhccccccchhhccccchhHHHH---HHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 013655          260 DTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL---LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN  336 (439)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (439)
                      ....+.  ..+++. +.++...+.+      ....+....   .++++.   +.++...+...+..+.++....+++.+.
T Consensus       258 ~~~~~~--~~~~~~-~~~~~~~~~~------~~~~~~~~~~~d~~ll~~---~~fl~~~~~~~~~~~g~~~p~~~l~~~~  325 (509)
T KOG2504|consen  258 SGLKKL--SLSNLA-TLKRGPDKWR------NSPLQAFLSMLDLSLLKD---PKFLLLALSNLFAYLGFNVPFVYLPSYA  325 (509)
T ss_pred             CCCCcc--cccchh-hhhhCCcccc------ccchhhhhhhhhHHHHcC---chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000  000000 0000000000      000000011   344544   3344444455566667777777777777


Q ss_pred             cCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHhhccccchhhhHH
Q 013655          337 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLG--RKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLL  414 (439)
Q Consensus       337 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (439)
                      ..          .+.+...++...++.++..++|+++.|++.|+..  ++.+..++.++.+++.+.+.+.++.+.+....
T Consensus       326 ~~----------~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~  395 (509)
T KOG2504|consen  326 KS----------LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFS  395 (509)
T ss_pred             hh----------cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            54          4488888899999999999999999999999977  56667788888888888888888888888889


Q ss_pred             HHHHhhhhheeeeeeeeccccccC
Q 013655          415 FGARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       415 ~~~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      .++|++.+.........+.|+.+.
T Consensus       396 ~~fG~~~g~~~~l~~~i~~~~~g~  419 (509)
T KOG2504|consen  396 ILFGFCVGSFSSLTPVILVDLVGL  419 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCh
Confidence            999999888777776666666553

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.91  E-value=3.2e-22  Score=196.78  Aligned_cols=172  Identities=20%  Similarity=0.258  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-----chhHH-HHHHHHHHH
Q 013655           32 AYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-----GRRKG-FLITAIVTS  105 (439)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----G~r~~-~~~~~~~~~  105 (439)
                      .......+..+.........+|.+.++.|.|..++|.. +.....+ ++.+++|+++||+     ||||. +..+.++.+
T Consensus        15 ~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~   92 (491)
T PRK11010         15 AILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL   92 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence            33445556777777788888999999999999999987 3333333 5889999999999     99886 667777777


Q ss_pred             HHHHHHhhc---chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccc
Q 013655          106 AAGLLSAFA---PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-RLG  180 (439)
Q Consensus       106 ~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-~~g  180 (439)
                      ++..++++.   ++++.+.+.+++.|++.+.. ++..++..|++|+++|+++.++...+..+|.++++.+..++.+ ..|
T Consensus        93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G  172 (491)
T PRK11010         93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG  172 (491)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            777776664   46888888999999988877 7777999999999999999999999999999999999999988 579


Q ss_pred             hhHHHHHhHHHHHHHHHHHhcccCC
Q 013655          181 WRWLLGLSAFPSSLLLLLYSVTPES  205 (439)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~  205 (439)
                      ||..|++.++..++..+..++.||+
T Consensus       173 Wr~~f~i~a~l~ll~~l~~~~~~e~  197 (491)
T PRK11010        173 WQGMYWLMAALLIPCIIATLLAPEP  197 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999888777766655556664

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.4e-22  Score=195.04  Aligned_cols=299  Identities=21%  Similarity=0.300  Sum_probs=218.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Q 013655           27 QLCVLAYAGMGWISEAMEMMLLSF-VGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS  105 (439)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  105 (439)
                      ...++..++..++........++. .+..+.++.+....+.+.+.+++.++++++.+++|.+.||++..+.+....+.++
T Consensus        43 dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~  122 (495)
T KOG2533|consen   43 DLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWG  122 (495)
T ss_pred             HHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHH
Confidence            344444455555555555544432 2223458888999999999999999999999999999999998898888888888


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh------hcc
Q 013655          106 AAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLV------MPR  178 (439)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l------~~~  178 (439)
                      +..++.....|++.+++.|++.|+..+.. |....++..|+.+++||..+|++.+..++|+++|++++..+      ...
T Consensus       123 ~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~  202 (495)
T KOG2533|consen  123 LFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL  202 (495)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence            88878777999999999999999999999 88889999999999999999999999999999999999886      345


Q ss_pred             cchhHHHHHhHHHHHHHHH-HHhcccCCchhhhhccchHHHHHHH-HHHHHHhCCCCCCCCCccchhhhhhhccccCCCC
Q 013655          179 LGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVL-EKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSS  256 (439)
Q Consensus       179 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (439)
                      .|||+.|++.++++++..+ +++++|+.|...  +-..+++++.. ++.++.+.+..                       
T Consensus       203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~--~fl~~~ek~~~~~~~~~~~~~~~-----------------------  257 (495)
T KOG2533|consen  203 AGWRWLFIIEGVITLVLGIVVFFFLPDNPSKA--WFLTDEEKELVVERLRESPSGGI-----------------------  257 (495)
T ss_pred             CCceeehhHHHHHHHHHHheEEEEecCChhhc--cccchHHHHHHHHHHHhccCCCc-----------------------
Confidence            7899999999988887654 567789887522  11111111111 11110000000                       


Q ss_pred             CCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 013655          257 NEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN  336 (439)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (439)
                                                        .++.++..+++.++.   +.++...+.+++.....++...|.|.+.
T Consensus       258 ----------------------------------~~~~~~~~~~~a~~d---p~vw~~~l~~~~~~lv~~~~~~~lpl~l  300 (495)
T KOG2533|consen  258 ----------------------------------ENKFKWKGFKEALKD---PGVWPFSLCYFFLKLVNYGFSYWLPLYL  300 (495)
T ss_pred             ----------------------------------ccccCHHHHHHHHhc---hhHHHHHHHHHHHhhccccHHHHHHHHH
Confidence                                              000112244444443   4556777777888888888889999888


Q ss_pred             cCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHH----hhhHHHHHHHHHHHHH
Q 013655          337 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR----LGRKLSMSSMFFCCCI  396 (439)
Q Consensus       337 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~~~~~~~~~~~~  396 (439)
                      .+ +        .+.+..++..+.+...++++++.+++|+++||    ..+|........+...
T Consensus       301 ~~-~--------~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~  355 (495)
T KOG2533|consen  301 KS-N--------GGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI  355 (495)
T ss_pred             Hc-C--------CCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            54 1        34677777888889999999999999999999    5566655544444433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.91  E-value=3.3e-22  Score=187.19  Aligned_cols=179  Identities=13%  Similarity=0.172  Sum_probs=151.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Q 013655           25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQ-ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV  103 (439)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~  103 (439)
                      .+++..+.++..+++..  .+...++..|++.+++|+|..+ .|.+.+++..+++++.+++|+++||+|.|+++.++.+.
T Consensus        24 ~W~~~~~~lC~fGF~~e--~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~  101 (511)
T TIGR00806        24 SWRVLVLYLCFYGFMAQ--FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALS  101 (511)
T ss_pred             chhHHHHHHHHHHHHHH--hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            34444444444443333  4566778889999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655          104 TSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW  183 (439)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~  183 (439)
                      +++..++.+++++++.+.+.|++.|++.|...+...++..++|+++|+++.|+...+..+|.+++++++++ ...+|||.
T Consensus       102 Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~  180 (511)
T TIGR00806       102 FVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWIS  180 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchh
Confidence            99999999999999999999999999999888667999999999999999999999999999999999999 55689987


Q ss_pred             HHH---HhHHHHHHHHHHHhcccCCc
Q 013655          184 LLG---LSAFPSSLLLLLYSVTPESP  206 (439)
Q Consensus       184 ~~~---~~~~~~~~~~~~~~~~~~~~  206 (439)
                      ...   +......+++++.+++|..+
T Consensus       181 y~~Ln~Isl~s~~~a~~~a~~LP~~~  206 (511)
T TIGR00806       181 YSTLNIISLVFMTFSVFLALFLKRPK  206 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            543   33344445566678888543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.90  E-value=3.9e-22  Score=193.40  Aligned_cols=320  Identities=15%  Similarity=0.028  Sum_probs=185.4

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh--
Q 013655           36 MGWISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA--  112 (439)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~--  112 (439)
                      +.+++.........++.| ++.+++|+|+.+.|++.+++.++..++++++|+++||+|||++++++..+.+++.....  
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   96 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY   96 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444 55666999999999999999999999999999999999999998876665554432211  


Q ss_pred             -hcch-----HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 013655          113 -FAPN-----YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLL  185 (439)
Q Consensus       113 -~~~~-----~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~  185 (439)
                       ..+.     .....+..++.|.+.... +....+. +.. .++++..+|......++|..++|++++++.+ .+|+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f  173 (420)
T PRK09528         97 VFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINF  173 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhH
Confidence             1111     111222333334333332 2222332 222 3456788899999999999999999999876 5899999


Q ss_pred             HHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhh
Q 013655          186 GLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKE  265 (439)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (439)
                      ++.+++.++..+..++.+++++.     +. +.++   + ..  +++                                 
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~---~-~~--~~~---------------------------------  208 (420)
T PRK09528        174 WLGSGSALILLVLLFFAKPDAPS-----TA-KVAN---A-LG--ANA---------------------------------  208 (420)
T ss_pred             HHHHHHHHHHHHHHhcccccccc-----hh-hhcc---c-hh--ccc---------------------------------
Confidence            88887777666555544332210     00 0000   0 00  000                                 


Q ss_pred             hcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhcCCCcccc
Q 013655          266 MARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL-LWLVFFGNAFSYYGLVLLTTELNNGQNKCVS  344 (439)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (439)
                                     .           +......+..++++..+...+ .......    +.....+.+.+..+..    
T Consensus       209 ---------------~-----------~~~~~~~~~~l~~~~~~~l~l~~~~~~~~----~~~~~~~~~~~~~~~~----  254 (420)
T PRK09528        209 ---------------S-----------AVSLKDALALLKLPKFWFLVLYVIGVACF----YDVFDQQFPNFFASFF----  254 (420)
T ss_pred             ---------------c-----------cccHHHHHHHccCCCeEeehHHHHHHHHH----HHHHHHHHHHHHHHHH----
Confidence                           0           000002333444332222222 1111111    1111111222221100    


Q ss_pred             cccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhhe
Q 013655          345 NELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVT  424 (439)
Q Consensus       345 ~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  424 (439)
                        .+.+.+....+...++..+...++.++.|++.||+|+|+.+..+.++.++..+++.+.++.+......++.+++.+..
T Consensus       255 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~  332 (420)
T PRK09528        255 --ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFL  332 (420)
T ss_pred             --hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence              001233333467777778888899999999999999999998888888887777776666665555566666666555


Q ss_pred             eeeeeeeccccccCC
Q 013655          425 FTVVYVYAPEVSHRS  439 (439)
Q Consensus       425 ~~~~~~~~~e~~p~~  439 (439)
                      .+....+++|.+|++
T Consensus       333 ~~~~~~~~~~~~~~~  347 (420)
T PRK09528        333 LVGVFKYITLNFDVR  347 (420)
T ss_pred             HHHHHHHHHHHcCcc
Confidence            555556666666653

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.90  E-value=6.8e-23  Score=206.10  Aligned_cols=302  Identities=13%  Similarity=0.109  Sum_probs=210.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 013655           32 AYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS  111 (439)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  111 (439)
                      +...+..+............++.+.++++++..+.|++.+.+.+++.++.++.|++.||+|||+.+.++.++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            34445666667777788888999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhcc---------------------------------------------------hHHHHHHHHHHHhhccCcc-hhhHH
Q 013655          112 AFAP---------------------------------------------------NYYLLLFFRCLVGLGLGGG-PVLAS  139 (439)
Q Consensus       112 ~~~~---------------------------------------------------~~~~~~~~~~l~G~~~g~~-~~~~~  139 (439)
                      ++.+                                                   .+..++++|+++|+|.+.. +...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            7642                                                   2456789999999999998 77889


Q ss_pred             HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc----------------------chhHHHHHhHHHHHHHHH
Q 013655          140 WFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL----------------------GWRWLLGLSAFPSSLLLL  197 (439)
Q Consensus       140 ~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~----------------------g~~~~~~~~~~~~~~~~~  197 (439)
                      ++.|++|+++|++++|++..+..+|.++|+++++++.+.+                      +|+..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887543                      277788888877777666


Q ss_pred             HHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhh
Q 013655          198 LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAK  277 (439)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (439)
                      .++++|++.+....+.+.+..+    + ...+..                                    +.++..+   
T Consensus       276 ~l~~~p~~lp~~~~~~~~~~~~----~-~~~~~~------------------------------------~~~~~~~---  311 (633)
T TIGR00805       276 PFFFFPKALPKEGKRVNVDVHE----T-EKLEKS------------------------------------EDKSRKK---  311 (633)
T ss_pred             HHHhCccccCCcccccchhhhh----h-hccccc------------------------------------ccccchh---
Confidence            6666666532100000000000    0 000000                                    0000000   


Q ss_pred             hccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCch
Q 013655          278 EMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINY  357 (439)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  357 (439)
                                .....++.+..++.+++++..   +...+..++....+++...|.|.+.++.         .+.+...++
T Consensus       312 ----------~~~~~~~~~~~~~~Ll~n~~f---~~~~l~~~~~~~~~~~~~~~lP~yl~~~---------~g~s~~~ag  369 (633)
T TIGR00805       312 ----------NSDITKDFPKIIKRLLCNPIY---MLVILAQVIDSLAFNGYITFLPKYLENQ---------YGISSAEAN  369 (633)
T ss_pred             ----------hhhhHHHHHHHHHHHHcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCCcHHHHH
Confidence                      000001112255667766543   3344444445555666777788777542         346666666


Q ss_pred             hhHHHHhh-hhhhHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHH
Q 013655          358 GDVFITSF-AEFPGLLLAAAMVDRLG--RKLSMSSMFFCCCIFLV  399 (439)
Q Consensus       358 ~~~~~~~i-~~~~g~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~  399 (439)
                      .......+ +.++|.+++|+++||++  .|+.+..+.++..+..+
T Consensus       370 ~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~  414 (633)
T TIGR00805       370 FLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL  414 (633)
T ss_pred             HHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence            66665555 56899999999999987  45666666666655543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.90  E-value=6.5e-22  Score=215.44  Aligned_cols=310  Identities=12%  Similarity=0.012  Sum_probs=208.7

Q ss_pred             HHHHHHHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh---hcchHHHHH
Q 013655           47 LLSFVGPAVQSLWHLSP--NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA---FAPNYYLLL  121 (439)
Q Consensus        47 ~~~~~~~~~~~~~~~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~  121 (439)
                      ....+.+.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++..   ..++++.++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  107 (1146)
T PRK08633         28 HKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAF  107 (1146)
T ss_pred             HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            33444555666666654  4478999999999999999999999999999999988876655554433   457899999


Q ss_pred             HHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc--------c-chhHHHHHhHH-
Q 013655          122 FFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR--------L-GWRWLLGLSAF-  190 (439)
Q Consensus       122 ~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~--------~-g~~~~~~~~~~-  190 (439)
                      ++|++.|++.+.. ++..+++.|++|+++|++++|+...+..+|.++|+++++++.+.        + +|.+.+.+..+ 
T Consensus       108 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  187 (1146)
T PRK08633        108 AVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLA  187 (1146)
T ss_pred             HHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Confidence            9999999999988 77789999999999999999999999999999999999998875        2 23333333332 


Q ss_pred             HHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccC
Q 013655          191 PSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDE  270 (439)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (439)
                      ..++.+++.+.+|+.+.....+.+. +..                                                   
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------------------------------------------  215 (1146)
T PRK08633        188 VAVLGLIFAYRLPKVPAAAPEVFDK-KKY---------------------------------------------------  215 (1146)
T ss_pred             HHHHHHHHHhcCcCCCCCCcccccc-ccc---------------------------------------------------
Confidence            2333334445556654211000000 000                                                   


Q ss_pred             CchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccC
Q 013655          271 DSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSG  350 (439)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  350 (439)
                                         +..+.....++.+++++..+..++.......   ..+....+.+.+...         ..|
T Consensus       216 -------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~g  264 (1146)
T PRK08633        216 -------------------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWF---ISQLAQANFPAYAKE---------VLG  264 (1146)
T ss_pred             -------------------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---HHHHHHHhhHHHHHH---------HhC
Confidence                               0000011145556655444433332222111   111222233333321         123


Q ss_pred             CCCC-CchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeee
Q 013655          351 KSRD-INYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVY  429 (439)
Q Consensus       351 ~~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  429 (439)
                      .+.. ..++..+...++.++|.++.+++.||+++++.+.++.++.+++.+.+.+..+.+..++..++.|++.+...+...
T Consensus       265 ~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  344 (1146)
T PRK08633        265 LDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLN  344 (1146)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            5555 557788888899999999999999999998888888877777777776666666666777788888887777778


Q ss_pred             eeccccccCC
Q 013655          430 VYAPEVSHRS  439 (439)
Q Consensus       430 ~~~~e~~p~~  439 (439)
                      +++.+..|++
T Consensus       345 ~~~~~~~p~~  354 (1146)
T PRK08633        345 ALIQFRAPEK  354 (1146)
T ss_pred             HHHhhcCCcc
Confidence            8888887753

>PTZ00207 hypothetical protein; Provisional

Probab=99.90  E-value=9.9e-22  Score=192.58  Aligned_cols=176  Identities=19%  Similarity=0.173  Sum_probs=135.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655           25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT  104 (439)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  104 (439)
                      ..+|..+........+.+. .+.++.+.+.+.+++|+|..+.+++.++. ....+++++.|++.||+|+|+++.++.+++
T Consensus        24 ~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4455555544444444433 34566778899999999999999998874 445567888999999999999999999999


Q ss_pred             HHHHHHHhhc------chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655          105 SAAGLLSAFA------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP  177 (439)
Q Consensus       105 ~~~~~~~~~~------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~  177 (439)
                      +++.++++++      ++++.+++.|++.|+|.+.. +.....+.+++| ++||++.|+...+.++|+.+.+.+...+..
T Consensus       102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998887      68999999999999998877 666677788886 789999999999999999865444444333


Q ss_pred             ccchhHHHHHhHHHHHHHHHH-HhcccC
Q 013655          178 RLGWRWLLGLSAFPSSLLLLL-YSVTPE  204 (439)
Q Consensus       178 ~~g~~~~~~~~~~~~~~~~~~-~~~~~~  204 (439)
                       .+|+..|++.+++.++..++ ..++++
T Consensus       181 -~~~~~~fl~l~vl~~vv~ll~~~~vr~  207 (591)
T PTZ00207        181 -DNTSAYFFFLMSFALVVGILAIVFMRL  207 (591)
T ss_pred             -HhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence             36888888777776665444 444433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.90  E-value=1.9e-21  Score=176.04  Aligned_cols=319  Identities=13%  Similarity=0.144  Sum_probs=240.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 013655           29 CVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAG  108 (439)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  108 (439)
                      ..+..+...++..++.......+.|.+.+.++++..+++++..+++.++.+.+++.|++.+|+|+|+.+++|+.++++++
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            33555566677778888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh---hcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc------
Q 013655          109 LLSA---FAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR------  178 (439)
Q Consensus       109 ~~~~---~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~------  178 (439)
                      .++.   ...++..++++.++.|.|.+.. ....+++....+++...+.+++.+.++++|..++|++++++..+      
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            9885   4567889999999999999999 78889999999998889999999999999999999999988762      


Q ss_pred             -------------cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhh
Q 013655          179 -------------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHE  245 (439)
Q Consensus       179 -------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (439)
                                   -.|+.+|...+...++..+.....+.+.      .+.++..                          
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~------~~~~~~~--------------------------  220 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPD------LQVAAPS--------------------------  220 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCc------CCccccc--------------------------
Confidence                         1266677766665555544443322110      0000000                          


Q ss_pred             hhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhh
Q 013655          246 LQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSY  325 (439)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                                                    +  .++             +.....++++++..+...+..+++...... 
T Consensus       221 ------------------------------~--~~~-------------~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva-  254 (422)
T COG0738         221 ------------------------------L--GAS-------------GSAGLSSLFQNKHLRLGVLAIFLYVGAEVA-  254 (422)
T ss_pred             ------------------------------c--ccc-------------ccchHHHHHhChHHHHHHHHHHHHHhHHHH-
Confidence                                          0  000             000345566666666555555555544433 


Q ss_pred             hHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc
Q 013655          326 YGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ  405 (439)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  405 (439)
                        ...|.+.+..+.         .|.+.+++....+.+.++.++||+++.++..|+...+.+....++..+.++...+.+
T Consensus       255 --~gsfl~~y~~~~---------~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~  323 (422)
T COG0738         255 --IGSFLVSYLEEL---------LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG  323 (422)
T ss_pred             --HHHHHHHHHHhc---------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Confidence              344455555331         345666778888999999999999999999999998888888777777666666665


Q ss_pred             ccchhhhHHHHHHhhhhheeeeeeeecccccc
Q 013655          406 PKGLTTGLLFGARICITVTFTVVYVYAPEVSH  437 (439)
Q Consensus       406 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p  437 (439)
                      + ...+..+++.|++++..+|..++...+..|
T Consensus       324 g-~v~~~~l~~ig~F~simfPTIfslal~~l~  354 (422)
T COG0738         324 G-VVALYALFLIGLFNSIMFPTIFSLALKNLG  354 (422)
T ss_pred             C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Confidence            5 445667788899999999998888777666

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.90  E-value=9.3e-22  Score=213.59  Aligned_cols=320  Identities=13%  Similarity=0.003  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHhhhcCCCc-hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH---HHHHHHHHHH
Q 013655           35 GMGWISEAMEMMLLSFVGP-AVQSLWHLSP-NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLI---TAIVTSAAGL  109 (439)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~---~~~~~~~~~~  109 (439)
                      ++..+...+.......+.. .+..+.+.+. ...++..+++.+.+++.++++|+++||+|||+++..   +.++.++..+
T Consensus        21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~  100 (1140)
T PRK06814         21 FFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAI  100 (1140)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444433333332 3333333332 457888889999999999999999999999997533   2222222222


Q ss_pred             HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655          110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS  188 (439)
Q Consensus       110 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~  188 (439)
                      .....++++.++++|+++|++.+.. ++..+++.+++++++|++++|+.+++.++|.++||++++++.+..+|+..|+..
T Consensus       101 ~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~  180 (1140)
T PRK06814        101 YGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL  180 (1140)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            3334489999999999999999988 888899999999999999999999999999999999999999999999998555


Q ss_pred             HHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcc
Q 013655          189 AFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMAR  268 (439)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (439)
                      ++..++.+++.+++|+++....  ....+ ....                                              
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~----------------------------------------------  211 (1140)
T PRK06814        181 MGIAVLGWLASLFIPKTGNAAP--DLKID-RNII----------------------------------------------  211 (1140)
T ss_pred             HHHHHHHHHHHhhCCCCCCCCC--CCeec-cchH----------------------------------------------
Confidence            5555555555666665432100  00000 0000                                              


Q ss_pred             cCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccc
Q 013655          269 DEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQ  348 (439)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (439)
                                              ++....++.+++++..+...+...   ...+.+.....+.|.+..+.         
T Consensus       212 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~---------  255 (1140)
T PRK06814        212 ------------------------RSTITLLKYAKADKRIWLAILGIS---WFWLVGAVVLSQLPLLAKET---------  255 (1140)
T ss_pred             ------------------------HHHHHHHHHHhcCchHHHHHHHHH---HHHHHHHHHHHHhHHHHHHH---------
Confidence                                    000114555555444433333222   22222233334455554321         


Q ss_pred             cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc--------------------cccc
Q 013655          349 SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ--------------------QPKG  408 (439)
Q Consensus       349 ~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--------------------~~~~  408 (439)
                      .|.+....+...+..+++.++|.++.|++.||.++++.+..+.++.+++.+.+.+.                    .+.+
T Consensus       256 ~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (1140)
T PRK06814        256 LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGW  335 (1140)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccH
Confidence            23555566888889999999999999999988776665554444444433322221                    3445


Q ss_pred             hhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          409 LTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       409 ~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      ...+..+++|++.+...+...+++.+.+|++
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  366 (1140)
T PRK06814        336 RILIDLFGLAAAGGLYIVPLFAALQAWANPA  366 (1140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc
Confidence            5556667778887777777888888888764

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.89  E-value=4.1e-21  Score=184.80  Aligned_cols=321  Identities=14%  Similarity=0.077  Sum_probs=192.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 013655           33 YAGMGWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS  111 (439)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  111 (439)
                      .+....++.........++.|. +.+++|.|+.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   85 (396)
T TIGR00882         6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPF   85 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            3334445555555555555554 456789999999999999999999999999999999999999987766655443322


Q ss_pred             ---hhcc-----hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 013655          112 ---AFAP-----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR  182 (439)
Q Consensus       112 ---~~~~-----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~  182 (439)
                         .+.+     .+...++.+++.|++.+.. +....+..+..  ++++..+|......++|..++|++++.+.+ .+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~  162 (396)
T TIGR00882        86 FIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQ  162 (396)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCch
Confidence               1221     2334566788888888776 55556665543  334567788888889999999999998765 5999


Q ss_pred             HHHHHhHHHHHHHHHHHhcc-cCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCC
Q 013655          183 WLLGLSAFPSSLLLLLYSVT-PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDT  261 (439)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (439)
                      ..|++.+++.++..++.+.. +++++.       ++.+    +..   +.+.                            
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~---~~~~----------------------------  200 (396)
T TIGR00882       163 IVFWLGSGFALILMLLLMFAKPKAPSS-------ATVA----NAL---GANA----------------------------  200 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhh----ccc---cccc----------------------------
Confidence            99998887777665544443 332110       0000    000   0000                            


Q ss_pred             chhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCc
Q 013655          262 TPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNK  341 (439)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (439)
                                       .             +.+..+.+++++++..+......   ++....+.....+.+.+..+.. 
T Consensus       201 -----------------~-------------~~~~~~~~~~l~~~~~~~~~l~~---~~~~~~~~~~~~~~~~y~~~~~-  246 (396)
T TIGR00882       201 -----------------S-------------AFSLKLALELFRQRKFWMFVLYV---VGVACVYDVFDQQFANFFTSFF-  246 (396)
T ss_pred             -----------------C-------------CCCHHHHHHHHcCCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc-
Confidence                             0             00001345555544333222221   1122222222222333321110 


Q ss_pred             ccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhh
Q 013655          342 CVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICI  421 (439)
Q Consensus       342 ~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  421 (439)
                           .+.+.+....+...+...+...++.+..+++.||+|||+.+.++..+.++...+....++.+......++.+++.
T Consensus       247 -----~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~  321 (396)
T TIGR00882       247 -----ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEV  321 (396)
T ss_pred             -----cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence                 001123333466677777888889999999999999999998888888887766666656555555555555554


Q ss_pred             hheeeeeeeecccccc
Q 013655          422 TVTFTVVYVYAPEVSH  437 (439)
Q Consensus       422 ~~~~~~~~~~~~e~~p  437 (439)
                      .........+..+..|
T Consensus       322 ~~~~~~~~~~~~~~~~  337 (396)
T TIGR00882       322 PFLLVGCFKYITSQFD  337 (396)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            4333333333333333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.88  E-value=6.4e-21  Score=186.33  Aligned_cols=321  Identities=14%  Similarity=0.111  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL  110 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  110 (439)
                      +..++++.+...++..+.....+.+..+..-|+...+++..+..+...+.++++|.++||++||++++.+.++.++..+.
T Consensus        12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~   91 (524)
T PF05977_consen   12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALL   91 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence            34455566666777777777777777777889999999999999999999999999999999999999988877655444


Q ss_pred             Hhh-----cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 013655          111 SAF-----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL  184 (439)
Q Consensus       111 ~~~-----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~  184 (439)
                      .++     ..+.+.+++..++.|++.+.. |...+.+.+..|+++...+.++.+...++...+||.++|.+...+|-...
T Consensus        92 L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~  171 (524)
T PF05977_consen   92 LAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAA  171 (524)
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            332     247889999999999999998 78889999999999999999999999999999999999999998999999


Q ss_pred             HHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchh
Q 013655          185 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK  264 (439)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (439)
                      |.+.++..++..+.....+.++.    + +..+.++..+.+                                       
T Consensus       172 f~inalsfl~~i~~l~~~~~~~~----~-~~~~~e~~~~~l---------------------------------------  207 (524)
T PF05977_consen  172 FLINALSFLISILALLRWKPPPP----P-SSLPRERFFSAL---------------------------------------  207 (524)
T ss_pred             HHHHHHHHHHHHHHHHHcccccc----c-cccchhhhhhhH---------------------------------------
Confidence            98888776665554444432211    0 000000000000                                       


Q ss_pred             hhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccc
Q 013655          265 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVS  344 (439)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (439)
                                                     ...++.+.+++..+..+.....+......++.   ..|.+..+.     
T Consensus       208 -------------------------------~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~a---LlPl~a~~~-----  248 (524)
T PF05977_consen  208 -------------------------------REGLRYVRSSPPLRSVLLRSFLFNLFASAVWA---LLPLFARDV-----  248 (524)
T ss_pred             -------------------------------HHHHHHHhcchHHHHHHHHHHHHHHhhhHHHH---hhhHHHHHH-----
Confidence                                           01455555555444444433333332222222   244443221     


Q ss_pred             cccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhhe
Q 013655          345 NELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVT  424 (439)
Q Consensus       345 ~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  424 (439)
                          .+.+...-++..+..+++.++|.++.+++.+|+++++.+..+.++.+++++.+.+.++.+...+.+++.|++....
T Consensus       249 ----l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~  324 (524)
T PF05977_consen  249 ----LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIA  324 (524)
T ss_pred             ----hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence                2234444488889999999999999999999999988888888888888888888888887778888888888777


Q ss_pred             eeeeeeeccccccC
Q 013655          425 FTVVYVYAPEVSHR  438 (439)
Q Consensus       425 ~~~~~~~~~e~~p~  438 (439)
                      .....+...+..|+
T Consensus       325 ~~~~~t~~Q~~~P~  338 (524)
T PF05977_consen  325 NSSLNTLVQLSVPD  338 (524)
T ss_pred             HHHHHHHHHHhCCH
Confidence            77666777776664

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.88  E-value=1.7e-20  Score=183.82  Aligned_cols=173  Identities=14%  Similarity=0.115  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLL-SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTSAAG  108 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~  108 (439)
                      ++.++...+...+..+.. .....++.+++|++..+.+++.+.+.....+..+++|+++|| +||||+++.+.++++++.
T Consensus        16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~   95 (489)
T PRK10207         16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY   95 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence            333334444444444444 445566778899999999999999998888889999999999 999999999999999999


Q ss_pred             HHHhhcchHH-HHHHHHHHHhhccCcc-hhhHHHHhhhcCCC--chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 013655          109 LLSAFAPNYY-LLLFFRCLVGLGLGGG-PVLASWFLEFIPAP--NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL  184 (439)
Q Consensus       109 ~~~~~~~~~~-~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~  184 (439)
                      +++.++++.. .++++|+++|+|.|.. +...+++.|.+|++  +|+++++++..+.++|..++|.+++++.+++|||..
T Consensus        96 ~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~  175 (489)
T PRK10207         96 FMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVT  175 (489)
T ss_pred             HHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence            9988877644 3558899999999998 77889999999887  458899999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHhccc
Q 013655          185 LGLSAFPSSLLLLLYSVTP  203 (439)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~  203 (439)
                      |++.++..++.++.+...+
T Consensus       176 F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        176 YNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             HHHHHHHHHHHHHHHHHcc
Confidence            9987655444444444433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.88  E-value=5.9e-20  Score=179.89  Aligned_cols=171  Identities=14%  Similarity=0.062  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hhh--cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHH
Q 013655           32 AYAGMGWISEAMEMMLLSFVGPAV-QSL--WHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTSAA  107 (439)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~  107 (439)
                      +.+....+...+..+...+.+|.+ .++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g   92 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            334445555555655555555555 455  89999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655          108 GLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN---RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW  183 (439)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~---rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~  183 (439)
                      .++.+++++++.+++.+++.|++.|.. +...+++++++|+++   |++++++...+.++|.++||.+++++.+.+||+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~  172 (475)
T TIGR00924        93 HFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHV  172 (475)
T ss_pred             HHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence            999999888888999999999999988 777789999998754   8889999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHhcc
Q 013655          184 LLGLSAFPSSLLLLLYSVT  202 (439)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~  202 (439)
                      .|.+.++..++..+.+++.
T Consensus       173 ~f~~~~~~~~~~~l~~~~~  191 (475)
T TIGR00924       173 GFNLAAVGMVIGLLTFFAG  191 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9998876665554444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.87  E-value=5.1e-20  Score=177.84  Aligned_cols=314  Identities=12%  Similarity=0.024  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHH-HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcch-hHHHHHHHHHHHHHHHHHhhcc
Q 013655           38 WISEAMEMMLL-SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR-RKGFLITAIVTSAAGLLSAFAP  115 (439)
Q Consensus        38 ~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~~  115 (439)
                      +++.+..+..+ +++.+++.+++|+|..+.|++.+++.++..++++++|+++||+|+ |+++.++.++.+++..+..+.+
T Consensus        11 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~   90 (418)
T TIGR00889        11 SFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVT   90 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444444444 555667778899999999999999999999999999999999965 7788888888888888888888


Q ss_pred             hHHHHHHHHHHHhhccCcc-hhhHHHH----h----hhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 013655          116 NYYLLLFFRCLVGLGLGGG-PVLASWF----L----EFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG  186 (439)
Q Consensus       116 ~~~~~~~~~~l~G~~~g~~-~~~~~~~----~----~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~  186 (439)
                      +++.+.+.|++.|++.+.. +...++.    .    |......|.+..|      .+|.+++|.+++.+....+|. +|+
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~  163 (418)
T TIGR00889        91 TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLY  163 (418)
T ss_pred             CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHH
Confidence            9999999999999977665 4433332    1    2222233445444      467888888888774333344 455


Q ss_pred             HhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhh
Q 013655          187 LSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEM  266 (439)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (439)
                      +.++..++..+..+.+||+|+..   ++++..   .++.                                         
T Consensus       164 ~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~---~~~~-----------------------------------------  196 (418)
T TIGR00889       164 ITAGSSALLGVFALTLPDIPVAK---STAKMS---IKVM-----------------------------------------  196 (418)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCc---cccccC---HHHH-----------------------------------------
Confidence            55555555555556667653210   000000   0000                                         


Q ss_pred             cccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccc
Q 013655          267 ARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNE  346 (439)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (439)
                                                 .+. +.+.+++++....+.+..+..   .........+.+.+..+.+.  ...
T Consensus       197 ---------------------------~~~-~~~~~~k~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~--~~~  243 (418)
T TIGR00889       197 ---------------------------LGL-DAFILFKNKRMAIFFFFSMLL---GAPLQITNIFGNGFLHEFGR--NPE  243 (418)
T ss_pred             ---------------------------hhh-hHHHHhcCCCeeeHHHHHHHH---HhHHHHHHHhHHHHHHHhcc--ccc
Confidence                                       000 122233333222222222221   11111122223333322110  000


Q ss_pred             cccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc-c---chhhhHHHHHHhhhh
Q 013655          347 LQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP-K---GLTTGLLFGARICIT  422 (439)
Q Consensus       347 ~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~g~~~~  422 (439)
                      ...+......+...++..+..+++.+..|+++||+|||+++..+.++.++....+....+ .   +..++..++.+++.+
T Consensus       244 ~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~  323 (418)
T TIGR00889       244 FADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFD  323 (418)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHH
Confidence            000112234478888888899999999999999999999999999988887665554322 1   233445666777777


Q ss_pred             heeeeeeeeccccccC
Q 013655          423 VTFTVVYVYAPEVSHR  438 (439)
Q Consensus       423 ~~~~~~~~~~~e~~p~  438 (439)
                      ...+....+++|.+|+
T Consensus       324 ~~~~~~~~~i~~~~p~  339 (418)
T TIGR00889       324 FFNISGSVFVEKEVPV  339 (418)
T ss_pred             HHHHHHHHHHHHHCCH
Confidence            7677777788888885

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.87  E-value=1.6e-20  Score=183.24  Aligned_cols=300  Identities=15%  Similarity=0.080  Sum_probs=198.8

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh----cchhH-HHHHHHHHHHHHHHHHhhcch------H
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN----FGRRK-GFLITAIVTSAAGLLSAFAPN------Y  117 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~G~r~-~~~~~~~~~~~~~~~~~~~~~------~  117 (439)
                      .+..+++.+++|+++.++|++.++..+..++..|+.|+++||    +|||| .++.+....+++.+++...++      .
T Consensus        20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            445677788899999999999999999999999999999998    67755 566777788877777766553      4


Q ss_pred             HHHHHHHHHHhhccCcc-hhhHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-------cccchhHHHHHh
Q 013655          118 YLLLFFRCLVGLGLGGG-PVLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-------PRLGWRWLLGLS  188 (439)
Q Consensus       118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~-------~~~g~~~~~~~~  188 (439)
                      +.+++.+++.+++.+.. .+..++..|.. ++++|++..++.+.+..+|..+++.+.+.+.       +..+|+..+.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~  179 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL  179 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence            45666777888887776 55567778877 4688999999999988888877766655544       246899999888


Q ss_pred             HHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhc
Q 013655          189 AFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMA  267 (439)
Q Consensus       189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (439)
                      +++.++..+. .+..+|+++.     ..++             ++                                   
T Consensus       180 ~~l~~~~~~~~~~~~~e~~~~-----~~~~-------------~~-----------------------------------  206 (437)
T TIGR00792       180 ALIGVVSLIICFFGTKERYSE-----IPKN-------------IE-----------------------------------  206 (437)
T ss_pred             HHHHHHHHHHHHcCCEecCCC-----CCcc-------------cc-----------------------------------
Confidence            8777766544 3444543210     0000             00                                   


Q ss_pred             ccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccccccc
Q 013655          268 RDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNEL  347 (439)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (439)
                       +                   +   .+....++.+++++..+......+.   ....++....+.+.+....        
T Consensus       207 -~-------------------~---~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------  252 (437)
T TIGR00792       207 -K-------------------K---LSLKQIFKALFKNDQLLILCLAYLF---YNLAFNIKNGVQVYYFTYV--------  252 (437)
T ss_pred             -c-------------------C---CCHHHHHHHHhCCHHHHHHHHHHHH---HHHHHHHHcchhheeEeee--------
Confidence             0                   0   0001145566665544333332222   2222222222233332111        


Q ss_pred             ccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc-ccchhhhHHHHHHhhhhheee
Q 013655          348 QSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ-PKGLTTGLLFGARICITVTFT  426 (439)
Q Consensus       348 ~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~  426 (439)
                       . .+....+....+..++.+++.++.++++||+|+|+++..+..+.+++.+.+.+.+ +.+...+..++.+++.+...+
T Consensus       253 -~-~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  330 (437)
T TIGR00792       253 -L-GDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTG  330 (437)
T ss_pred             -c-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHH
Confidence             1 1222335566667888999999999999999999999988888877776665543 334445556677777777778


Q ss_pred             eeeeecccccc
Q 013655          427 VVYVYAPEVSH  437 (439)
Q Consensus       427 ~~~~~~~e~~p  437 (439)
                      ..+++.+|..|
T Consensus       331 ~~~~~~~~~~~  341 (437)
T TIGR00792       331 LVWALVADTVD  341 (437)
T ss_pred             HHHHHHhhhhh
Confidence            78888777754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.87  E-value=6e-20  Score=163.85  Aligned_cols=297  Identities=17%  Similarity=0.149  Sum_probs=235.1

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 013655           42 AMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLL  121 (439)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (439)
                      -......+++++.+.+++|+|.+.+|+++++..+...+.+++..++..|+|.++.+..++++.+++.++-... +.+.++
T Consensus        25 R~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~  103 (395)
T COG2807          25 RPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLF  103 (395)
T ss_pred             chhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence            3445667888999999999999999999999999999999999999999999999999999999999888776 778888


Q ss_pred             HHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHhHHHHHHHHHHH
Q 013655          122 FFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-GWRWLLGLSAFPSSLLLLLY  199 (439)
Q Consensus       122 ~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~-g~~~~~~~~~~~~~~~~~~~  199 (439)
                      .+..+.|.+.+.. ...++++-+.+| ++-+..+|++....++|+.+++.+...+.++. |||..+.+.+++++++++.+
T Consensus       104 ~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~W  182 (395)
T COG2807         104 LGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIW  182 (395)
T ss_pred             HHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998 556677777776 56799999999999999999999998888877 79999999999988887776


Q ss_pred             hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhc
Q 013655          200 SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEM  279 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (439)
                      +.-..++     + .....            .                                                
T Consensus       183 lPq~~r~-----~-~~~~~------------~------------------------------------------------  196 (395)
T COG2807         183 LPQALRE-----Q-AASIA------------T------------------------------------------------  196 (395)
T ss_pred             hhhcccc-----c-ccccc------------c------------------------------------------------
Confidence            5321110     0 00000            0                                                


Q ss_pred             cccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhh
Q 013655          280 KSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGD  359 (439)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  359 (439)
                      +..               +-..++++   +..|.+.+.+..+...+|....|.|.+..+.          |.+.+.++..
T Consensus       197 ~~~---------------~~~~vw~~---~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~----------G~sa~~aG~l  248 (395)
T COG2807         197 KLV---------------SVRKVWRS---PLAWQVTLFMGLQSLLYYIVIGWLPAILIDR----------GLSAAEAGSL  248 (395)
T ss_pred             ccc---------------cccccccC---chhHHHHHHHHhhHHHHHHHHHHHHHHHHHc----------CCCHHHhhhH
Confidence            000               11123333   3345666667788999999999999999774          4999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeecccc
Q 013655          360 VFITSFAEFPGLLLAAAMVDRL-GRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEV  435 (439)
Q Consensus       360 ~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~  435 (439)
                      .++..+.+++..++...+.+|. .+|+.......++.++.+.+.+.+....... .+++|++.++.+|...+++...
T Consensus       249 lsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~r  324 (395)
T COG2807         249 LSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLR  324 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhh
Confidence            9999999999999999999975 5778888888888888888876655433333 5888888888888776655443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.85  E-value=3.4e-20  Score=165.76  Aligned_cols=121  Identities=21%  Similarity=0.237  Sum_probs=113.1

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcchh
Q 013655           57 SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPV  136 (439)
Q Consensus        57 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~  136 (439)
                      +..+.+..-.|++.+.+.+...+.++.+|.++||+|||.++.+|.+..++..++.+.+.|+..+++.|++.|+.-|...+
T Consensus        61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v  140 (451)
T KOG2615|consen   61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSV  140 (451)
T ss_pred             CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHH
Confidence            33445667789999999999999999999999999999999999999999999999999997777779999999999988


Q ss_pred             hHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655          137 LASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP  177 (439)
Q Consensus       137 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~  177 (439)
                      .-++++|..++++|+.+++.++...++|.++||.+++++.+
T Consensus       141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            99999999999999999999999999999999999999987

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.5e-21  Score=172.36  Aligned_cols=148  Identities=20%  Similarity=0.142  Sum_probs=137.2

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-h
Q 013655           57 SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-P  135 (439)
Q Consensus        57 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~  135 (439)
                      .+.+-+.+++|++.+...+...+.+++.|.+.||+|+|..+++|.+++..+.+++++.+++++++++|.++|+|.+.. .
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            345667889999999999999999999999999999999999999999999999999999999999999999999998 7


Q ss_pred             hhHHHHhhhcCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccC
Q 013655          136 VLASWFLEFIPAPN-RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPE  204 (439)
Q Consensus       136 ~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  204 (439)
                      +..+++++.+|+++ |++++|+...+.++|..+||+++|.+.+..|.+.+|++.++++++...+.+++-+
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence            77799999998865 7999999999999999999999999999999999999999999988777655533

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.84  E-value=1.9e-18  Score=168.58  Aligned_cols=165  Identities=24%  Similarity=0.278  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh
Q 013655           34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF  113 (439)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  113 (439)
                      +++......+........++++..++|-+ ....|+.+...++..++.++.|+++|.+|||.+++.+.++..++.+..+.
T Consensus        49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at  127 (599)
T PF06609_consen   49 FSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT  127 (599)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence            33333444445555566778888999865 66678889999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHH
Q 013655          114 APNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSS  193 (439)
Q Consensus       114 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~  193 (439)
                      ++|...++.+..+.|+|.|........++|..|.|.|+...++.....-+....++.++..+..+.+||+.|++.++...
T Consensus       128 A~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~  207 (599)
T PF06609_consen  128 AQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSG  207 (599)
T ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHH
Confidence            99999999999999999887766666689999999999888777766666666788888777777799999998888776


Q ss_pred             HHHHHH
Q 013655          194 LLLLLY  199 (439)
Q Consensus       194 ~~~~~~  199 (439)
                      +.+++.
T Consensus       208 i~~vl~  213 (599)
T PF06609_consen  208 IALVLI  213 (599)
T ss_pred             HHHHHH
Confidence            665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.84  E-value=1.7e-18  Score=166.28  Aligned_cols=272  Identities=13%  Similarity=-0.050  Sum_probs=179.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHH--HHHHHHHHHHHHHHHHH-hhhhcchhHHHHHHHHH-HHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLI--TSVVFAGMLVGAYSWGI-VSDNFGRRKGFLITAIV-TSA  106 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~~~~~~~~~~~~~~~g~-l~dr~G~r~~~~~~~~~-~~~  106 (439)
                      +..+...++.++.......+.+|.+.++.|.|.+++|++  .++..+...+.+|+.+. ..||+||||.+++...+ .+.
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            445566778899999999999999999999999999997  46678888888888844 79999999887555533 222


Q ss_pred             HHHHHh---hcch-HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655          107 AGLLSA---FAPN-YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW  181 (439)
Q Consensus       107 ~~~~~~---~~~~-~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~  181 (439)
                      +.....   ...+ ...++...++.++..+.. +....+..|..++++++...+....+..+|..+++.+.+++.+.+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            222222   1222 223333444444555555 56667788888888888888889898899999999999999999999


Q ss_pred             hHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCC
Q 013655          182 RWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDT  261 (439)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (439)
                      |..|++.++..++..+..++++++++.   +.+.++  +                                         
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~--~-----------------------------------------  196 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL--A-----------------------------------------  196 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch--h-----------------------------------------
Confidence            999999988877665555554433110   000000  0                                         


Q ss_pred             chhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCc
Q 013655          262 TPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNK  341 (439)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (439)
                                                       ...+++++++++..+......+.+.......+   .+.+.+..+   
T Consensus       197 ---------------------------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~l~~---  237 (390)
T TIGR02718       197 ---------------------------------RRASLFRFFRRPLAWSLLALALLSAMTAVSGF---GLSKLYLVD---  237 (390)
T ss_pred             ---------------------------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHH---HHhhHHHHh---
Confidence                                             00034445554443433333333332222222   233444433   


Q ss_pred             ccccccccCCCCCCchhhHHHHh-hhhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 013655          342 CVSNELQSGKSRDINYGDVFITS-FAEFPGLLLAAAMVDRLGRKLSMSSMFFCC  394 (439)
Q Consensus       342 ~~~~~~~~g~~~~~~~~~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  394 (439)
                             .|.+.+..+......+ +..+++.++.|++.||+|+|+.+..+..+.
T Consensus       238 -------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~  284 (390)
T TIGR02718       238 -------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA  284 (390)
T ss_pred             -------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                   3477777777666665 466778999999999999999888776655

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.83  E-value=1.4e-18  Score=171.20  Aligned_cols=162  Identities=13%  Similarity=0.067  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHHHHhh
Q 013655           36 MGWISEAMEMMLLSF-VGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTSAAGLLSAF  113 (439)
Q Consensus        36 ~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~  113 (439)
                      ...+...+..+.... ...++.+++|++..+.+++.+.+........+++|+++|| +|||+++..+.++.+++..++++
T Consensus        28 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~  107 (500)
T PRK09584         28 SIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW  107 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444 4445568899999999998888776666667899999999 59999999999999999888888


Q ss_pred             cc-hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhH
Q 013655          114 AP-NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN--RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSA  189 (439)
Q Consensus       114 ~~-~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~--rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~  189 (439)
                      ++ +.+.+.+.+++.|++.|.. +...+++.+++|+++  |+.++++++.+.++|..++|.+++++.+.+|||..|++.+
T Consensus       108 ~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~  187 (500)
T PRK09584        108 SGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV  187 (500)
T ss_pred             hcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            64 5666778899999999987 777788999998653  4567889999999999999999999999999999999877


Q ss_pred             HHHHHHHH
Q 013655          190 FPSSLLLL  197 (439)
Q Consensus       190 ~~~~~~~~  197 (439)
                      +..++..+
T Consensus       188 i~~~i~~i  195 (500)
T PRK09584        188 VGMLITVV  195 (500)
T ss_pred             HHHHHHHH
Confidence            65555443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.81  E-value=6.7e-18  Score=162.49  Aligned_cols=329  Identities=13%  Similarity=0.066  Sum_probs=200.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhh----hcchhHHHHHH-HHHHHHHHHHHhh
Q 013655           39 ISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSD----NFGRRKGFLIT-AIVTSAAGLLSAF  113 (439)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~G~r~~~~~~-~~~~~~~~~~~~~  113 (439)
                      +...+.+.....+.+.+.+++|.++...+++..+..+...+.+|+.|+++|    |+||||.++++ ....+++.+++++
T Consensus        14 ~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~   93 (477)
T TIGR01301        14 AGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGF   93 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence            333445555566666678899999999999999999999999999999999    59999998764 6666677777777


Q ss_pred             cchHH-----------------HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCch--hhHHHHHHHHHHHHHHHHHHHHH
Q 013655          114 APNYY-----------------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNR--GFWMVIFQTFWTVGTILEAGIAW  173 (439)
Q Consensus       114 ~~~~~-----------------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r--g~~~~~~~~~~~~g~~i~~~l~~  173 (439)
                      +++++                 .++++..+..++.... .+..+++.|..|+++|  +.+.++.+.+.++|.++++.+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~  173 (477)
T TIGR01301        94 AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA  173 (477)
T ss_pred             CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66542                 2233333445566666 6667899999998865  68999999999999999999988


Q ss_pred             Hh--hccc-------------chhHHHHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCC
Q 013655          174 LV--MPRL-------------GWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGN  237 (439)
Q Consensus       174 ~l--~~~~-------------g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (439)
                      +.  .+.+             +.+..|++.++..+++.++ .+..+|.|....  ++.++  +   +.            
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~--~~~~~--~---~~------------  234 (477)
T TIGR01301       174 YSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGS--DDFIN--S---EA------------  234 (477)
T ss_pred             HHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc--ccchh--h---hc------------
Confidence            64  2211             5678888888777776554 556677642110  00000  0   00            


Q ss_pred             CccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhC--hHHHHHHHHHH
Q 013655          238 LVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS--PELIKSTLLLW  315 (439)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~  315 (439)
                               ++                    .++ .+ +.            +..+   .-++.+.+  +..++..++-+
T Consensus       235 ---------~~--------------------~~~-~~-~~------------~~~~---~i~~~~~~mP~~m~~l~~vqf  268 (477)
T TIGR01301       235 ---------AP--------------------PSK-HG-EE------------AFFG---ELFGAFKYLPRPVWILLLVTC  268 (477)
T ss_pred             ---------cc--------------------ccc-cc-hh------------hhHH---HHHHHHHHCCHHHHHHHHHHH
Confidence                     00                    000 00 00            0000   02233332  23334444444


Q ss_pred             HHHHH-HHHhhhHHHHHHHHhhcCCCcccccccccCCCCC--CchhhHHHHhhhhhhHHHHHHHHHHHhhh-HHHHHHHH
Q 013655          316 LVFFG-NAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRD--INYGDVFITSFAEFPGLLLAAAMVDRLGR-KLSMSSMF  391 (439)
Q Consensus       316 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~i~~~~g~~~~g~l~dr~gr-r~~~~~~~  391 (439)
                      +.|+. ..+.+|........+....    +.. ...++..  ...+....+++...+.+++..++.+|+|+ |.....+.
T Consensus       269 fsW~a~f~~~~y~T~~vg~~v~~~~----~~~-~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~  343 (477)
T TIGR01301       269 LNWIAWFPFILFDTDWMGREVYGGS----VNQ-GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVN  343 (477)
T ss_pred             HHHHHHHHHHHhccHHHHHHHcCCC----Ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            44442 2222222222222222110    000 0000000  02344555566666777788889999984 67778887


Q ss_pred             HHHHHHHHHHhhccc---------------------cchhhhHHHHHHhhhhheeeeeeeecccccc
Q 013655          392 FCCCIFLVPLLFQQP---------------------KGLTTGLLFGARICITVTFTVVYVYAPEVSH  437 (439)
Q Consensus       392 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p  437 (439)
                      ++.+++++...+.++                     .+..++...+.|+.+...+...++++++..|
T Consensus       344 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~  410 (477)
T TIGR01301       344 IILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS  410 (477)
T ss_pred             HHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence            777777766654321                     1455666778889999999999999988877

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.80  E-value=6.7e-17  Score=156.23  Aligned_cols=165  Identities=14%  Similarity=0.112  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHHHHh
Q 013655           35 GMGWISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGLLSA  112 (439)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~  112 (439)
                      +...+...+..+....++| ++.+++|++..+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++..
T Consensus        15 ~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~   94 (493)
T PRK15462         15 VALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLG   94 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444544555 44567899999999999999999999999999999999 999999999999998887666


Q ss_pred             hcc-hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCC--chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655          113 FAP-NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP--NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS  188 (439)
Q Consensus       113 ~~~-~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~  188 (439)
                      ..+ +...+.+...+.++|.|.. +...+++.|.+|++  +|..++++...+.++|+.++|.+.+++.+.+||+..|.+.
T Consensus        95 ~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~ia  174 (493)
T PRK15462         95 ASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLA  174 (493)
T ss_pred             HhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHH
Confidence            533 2233444444555666766 66678899999876  7999999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHH
Q 013655          189 AFPSSLLLLLY  199 (439)
Q Consensus       189 ~~~~~~~~~~~  199 (439)
                      ++..++.++.+
T Consensus       175 aigm~l~li~~  185 (493)
T PRK15462        175 AVGMIAGLVIF  185 (493)
T ss_pred             HHHHHHHHHHH
Confidence            76555554443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.80  E-value=2.5e-18  Score=167.10  Aligned_cols=298  Identities=19%  Similarity=0.195  Sum_probs=208.4

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhh----hcchhHH-HHHHHHHHHHHHHHHhhc-c-------
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSD----NFGRRKG-FLITAIVTSAAGLLSAFA-P-------  115 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~G~r~~-~~~~~~~~~~~~~~~~~~-~-------  115 (439)
                      .++.+++.+.+|+++...|++..+..+..++..|+.|.++|    |+||||. ++.+..+.+++..++... |       
T Consensus        22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~  101 (428)
T PF13347_consen   22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA  101 (428)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence            45567788889999999999999999999999999999999    7997766 456778888887777655 4       


Q ss_pred             hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc-------chhHHHH
Q 013655          116 NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIP-APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-------GWRWLLG  186 (439)
Q Consensus       116 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~-------g~~~~~~  186 (439)
                      ....+.+..++..++.... .+..++..|..+ +++|.+..+....+..+|.++...+.+.+.+..       +|+....
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            1233456666668887777 556688899997 468999999999999998876666666554322       5888777


Q ss_pred             HhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhh
Q 013655          187 LSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKE  265 (439)
Q Consensus       187 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (439)
                      +.+++.++..++ .+..+|+++      +.++.+                                              
T Consensus       182 v~~iv~~v~~~i~~~~~ke~~~------~~~~~~----------------------------------------------  209 (428)
T PF13347_consen  182 VLAIVGLVFFLITFFFVKERSV------EVTEQE----------------------------------------------  209 (428)
T ss_pred             HHHHHHHHHhhhhhheeeeccc------cccccc----------------------------------------------
Confidence            777776665554 344444100      000000                                              


Q ss_pred             hcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHhhcCCCcccc
Q 013655          266 MARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLV-FFGNAFSYYGLVLLTTELNNGQNKCVS  344 (439)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (439)
                                               +..+-...++.+++++.++......++ ++..........++.....        
T Consensus       210 -------------------------~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl--------  256 (428)
T PF13347_consen  210 -------------------------KKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL--------  256 (428)
T ss_pred             -------------------------cccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh--------
Confidence                                     000000145666665544444443333 2333322222223333322        


Q ss_pred             cccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc--ccchhhhHHHHHHhhhh
Q 013655          345 NELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ--PKGLTTGLLFGARICIT  422 (439)
Q Consensus       345 ~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~  422 (439)
                            .+.+.......+..+..+++.++.++++||+|+|+++..+.++.+++.+.+.+..  +.+...+..++.|++.+
T Consensus       257 ------~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~  330 (428)
T PF13347_consen  257 ------GNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYG  330 (428)
T ss_pred             ------cCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhc
Confidence                  2223446666778888999999999999999999999999999999888877665  77778888899999999


Q ss_pred             heeeeeeeecccccc
Q 013655          423 VTFTVVYVYAPEVSH  437 (439)
Q Consensus       423 ~~~~~~~~~~~e~~p  437 (439)
                      ..+...+++.+|+.+
T Consensus       331 ~~~~~~~a~~ad~id  345 (428)
T PF13347_consen  331 AFFVIPWAMLADVID  345 (428)
T ss_pred             ccccccccccccchh
Confidence            999999999999876

>PRK09669 putative symporter YagG; Provisional

Probab=99.79  E-value=1.5e-17  Score=162.46  Aligned_cols=298  Identities=15%  Similarity=0.092  Sum_probs=184.3

Q ss_pred             HHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh----cchhHH-HHHHHHHHHHHHHHHhhcch------
Q 013655           48 LSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN----FGRRKG-FLITAIVTSAAGLLSAFAPN------  116 (439)
Q Consensus        48 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~-~~~~~~~~~~~~~~~~~~~~------  116 (439)
                      ..++.+++.+++|+|+..+|.+..+..+..++..|+.|+++||    +||||. ++.+....+++..+....++      
T Consensus        29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence            3455667888999999999999999999999999999999998    777554 55676777666655444432      


Q ss_pred             HHHHHHHHHHHhhccCcc-hhhHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-------ccchhHHHHH
Q 013655          117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-------RLGWRWLLGL  187 (439)
Q Consensus       117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-------~~g~~~~~~~  187 (439)
                      .+.+++..++.+.+.... .+..++.+|+. ++++|++..++...+..+|..+++.+...+..       ..+|+..+.+
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i  188 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMV  188 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            344555556666665555 55568888888 45779998888888888887777665443332       3467877777


Q ss_pred             hHHHHHHHHHHH-hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhh
Q 013655          188 SAFPSSLLLLLY-SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEM  266 (439)
Q Consensus       188 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (439)
                      .+++.++..+.. +..+|++..     +. +             +                                   
T Consensus       189 ~~ii~~v~~~~~~~~~~e~~~~-----~~-~-------------~-----------------------------------  214 (444)
T PRK09669        189 MGLLGVVLFFCCFFMTKERYTP-----EV-D-------------N-----------------------------------  214 (444)
T ss_pred             HHHHHHHHHHHHhCCeEEecCC-----CC-c-------------C-----------------------------------
Confidence            776665554433 333332100     00 0             0                                   


Q ss_pred             cccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccc
Q 013655          267 ARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNE  346 (439)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (439)
                                               ..+.+..++.+++++.++......+............   ...+....       
T Consensus       215 -------------------------~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~---~~y~~~~~-------  259 (444)
T PRK09669        215 -------------------------SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGA---TLYYVNYV-------  259 (444)
T ss_pred             -------------------------CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhh---hheeeeee-------
Confidence                                     0000114566666555444443333222111111111   11111110       


Q ss_pred             cccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc--cccchhhhHHHHHHhhhhhe
Q 013655          347 LQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ--QPKGLTTGLLFGARICITVT  424 (439)
Q Consensus       347 ~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~  424 (439)
                        . ...+..........+..+++.++.+++.||+|+|+.+..+.++.++..+.+.+.  ++.+...+..++.+++.+..
T Consensus       260 --~-~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  336 (444)
T PRK09669        260 --L-LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLT  336 (444)
T ss_pred             --c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence              0 112222344455567778899999999999999999887776655443333222  33444556667788888888


Q ss_pred             eeeeeeecccccc
Q 013655          425 FTVVYVYAPEVSH  437 (439)
Q Consensus       425 ~~~~~~~~~e~~p  437 (439)
                      .+..+++++|..+
T Consensus       337 ~~~~~am~ad~~d  349 (444)
T PRK09669        337 TPLQWSMFSDVVD  349 (444)
T ss_pred             HHHHHHHHHhhhh
Confidence            8888888888765

>TIGR00788 fbt folate/biopterin transporter

Probab=99.76  E-value=5.4e-17  Score=158.65  Aligned_cols=337  Identities=11%  Similarity=0.015  Sum_probs=207.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc-----hhHHHHHHHH
Q 013655           28 LCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG-----RRKGFLITAI  102 (439)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G-----~r~~~~~~~~  102 (439)
                      ...+.++...++..+..........+.+.+++|+|.++++...++..+...+- +++|.++||++     ||+.++++.+
T Consensus        25 ~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        25 RVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALK-PFAGVMSDTFPLFGYTKRWYLVLSGL  103 (468)
T ss_pred             chHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCccchHHHHHHHH
Confidence            33445555567788887445555666777789999999999999999999885 55999999997     6777777776


Q ss_pred             HH-HHHHHHHhhcchHH-HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHH---HHHHHHHHHHHHHHHHHHHHhh
Q 013655          103 VT-SAAGLLSAFAPNYY-LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWM---VIFQTFWTVGTILEAGIAWLVM  176 (439)
Q Consensus       103 ~~-~~~~~~~~~~~~~~-~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~---~~~~~~~~~g~~i~~~l~~~l~  176 (439)
                      +. +++....+..++.. ...+.+++.+++.+.. .+..+++.|..+ +++....   +......++|..+++.+++.+.
T Consensus       104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            66 34444444445543 3444778889998888 777799999988 5554433   3333445589999999999999


Q ss_pred             cccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCC
Q 013655          177 PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSS  256 (439)
Q Consensus       177 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (439)
                      +.++|+..|++.+++.++..+..++++|++.....+.+.++. .......                              
T Consensus       183 ~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~-~~~~~~~------------------------------  231 (468)
T TIGR00788       183 DKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLE-MNMALLT------------------------------  231 (468)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccch-hhhhhhh------------------------------
Confidence            999999999998888777766667777753100000000000 0000000                              


Q ss_pred             CCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHh
Q 013655          257 NEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKS-TLLLWLVFFGNAFSYYGLVLLTTEL  335 (439)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  335 (439)
                                    ....+               ..++........++++..+. ....++.+......  ....    +
T Consensus       232 --------------~~~~~---------------~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~--~~~~----f  276 (468)
T TIGR00788       232 --------------LGVLA---------------NVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGA--SGSV----F  276 (468)
T ss_pred             --------------hhHHH---------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCC--Ccee----E
Confidence                          00000               00000112223343333332 22222211110000  0000    0


Q ss_pred             hcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc----------c
Q 013655          336 NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ----------Q  405 (439)
Q Consensus       336 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----------~  405 (439)
                      .       ......|.++...+......+++.++|..+.+++.+|++.|+++.++.++.+++.+.....          +
T Consensus       277 ~-------~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~  349 (468)
T TIGR00788       277 C-------ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGIS  349 (468)
T ss_pred             E-------EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCC
Confidence            0       0001356888888899989999999999999999999999999999998888876543211          2


Q ss_pred             ccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          406 PKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       406 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      +.+......++.+++.+..+.....++.+..|++
T Consensus       350 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~  383 (468)
T TIGR00788       350 DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSG  383 (468)
T ss_pred             CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCC
Confidence            2233334455666666666666778888887764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.75  E-value=1.1e-16  Score=157.48  Aligned_cols=302  Identities=11%  Similarity=0.005  Sum_probs=180.6

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhh----hcch-hHHHHHHHHHHHHHHHHHhhcch------H
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSD----NFGR-RKGFLITAIVTSAAGLLSAFAPN------Y  117 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~G~-r~~~~~~~~~~~~~~~~~~~~~~------~  117 (439)
                      .++..++.+.+|+++..+|.+..+.-+..++..|+.|+++|    |+|| |+.++.+....+++..++...++      +
T Consensus        27 ~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~  106 (473)
T PRK10429         27 MYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQY  106 (473)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHH
Confidence            34556677888999999999999999999999999999999    5698 45566677777777655544331      2


Q ss_pred             HHHHHHHHHHhhccCcc-hhhHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-------ccchhHHHHHh
Q 013655          118 YLLLFFRCLVGLGLGGG-PVLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-------RLGWRWLLGLS  188 (439)
Q Consensus       118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-------~~g~~~~~~~~  188 (439)
                      ..+++..++.+++.... .+..++..|.. ++++|.+..++...+.++|+.+.+.+...+.+       ..+|+....+.
T Consensus       107 ~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~  186 (473)
T PRK10429        107 VFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVL  186 (473)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            34445556667777666 55668889988 57889999999777777776666555443322       12456555555


Q ss_pred             HHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhc
Q 013655          189 AFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMA  267 (439)
Q Consensus       189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (439)
                      +++.++..+. .+..+|.+.....+.+.                                                    
T Consensus       187 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~----------------------------------------------------  214 (473)
T PRK10429        187 IAFFIVSTIITLRNVHEVYSSDNQVSAE----------------------------------------------------  214 (473)
T ss_pred             HHHHHHHHHHHHcCceecCCcccccccc----------------------------------------------------
Confidence            5555444333 33344431100000000                                                    


Q ss_pred             ccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccccccc
Q 013655          268 RDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNEL  347 (439)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (439)
                      +                      +..+-...++.+++++.++......+...   ...+....+.+.+....        
T Consensus       215 ~----------------------~~~~~~~~~~~~~~n~~~~~ll~~~~~~~---~~~~~~~~~~~y~~~y~--------  261 (473)
T PRK10429        215 G----------------------SHLTLKDIVALIYKNDQLSCLLGMALAYN---IASNIINGFAIYYFTYV--------  261 (473)
T ss_pred             c----------------------cCCCHHHHHHHHhcCHHHHHHHHHHHHHH---HHHHHHhhheeeEEEEE--------
Confidence            0                      00000114555555544433333322222   22222222222222111        


Q ss_pred             ccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-----ccccchhhhHHHHHHhhhh
Q 013655          348 QSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF-----QQPKGLTTGLLFGARICIT  422 (439)
Q Consensus       348 ~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~  422 (439)
                        ..+....+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+..     ..+.+..++..++.+++.+
T Consensus       262 --~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~  339 (473)
T PRK10429        262 --IGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTA  339 (473)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Confidence              112222345555666888999999999999999999988777765554444322     2223444455566777778


Q ss_pred             heeeeeeeecccccc
Q 013655          423 VTFTVVYVYAPEVSH  437 (439)
Q Consensus       423 ~~~~~~~~~~~e~~p  437 (439)
                      ...+..+++.+|..+
T Consensus       340 ~~~~~~~am~ad~id  354 (473)
T PRK10429        340 LFWVLQVIMVADTVD  354 (473)
T ss_pred             HHHHHHHHHHhhhhh
Confidence            777877888888754

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.75  E-value=7.8e-16  Score=146.41  Aligned_cols=313  Identities=17%  Similarity=0.139  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHHHHhhcc
Q 013655           37 GWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG-RRKGFLITAIVTSAAGLLSAFAP  115 (439)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G-~r~~~~~~~~~~~~~~~~~~~~~  115 (439)
                      .++..++......++.+.+.++.|+|..++|.+.++..+..+++++++|.++||.+ +||.+.+..++.++..+.....+
T Consensus        10 ~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~   89 (400)
T PF03825_consen   10 MYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS   89 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34555556666777788888999999999999999999999999999999999986 57777777777777777777788


Q ss_pred             hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHH-HHHhhcccch---hHHHHHhHH
Q 013655          116 NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGI-AWLVMPRLGW---RWLLGLSAF  190 (439)
Q Consensus       116 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l-~~~l~~~~g~---~~~~~~~~~  190 (439)
                      +++.+++..++..+..... +...++..+...  +++.-.|-.-..+++|..++... .+.+....++   ...+++.++
T Consensus        90 ~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  167 (400)
T PF03825_consen   90 SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAI  167 (400)
T ss_pred             cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence            8888888888877776665 666666666654  33445566666677777666443 2333332222   234555555


Q ss_pred             HHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccC
Q 013655          191 PSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDE  270 (439)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (439)
                      ..++.....+.+|+.|+....+.+.++                                                     
T Consensus       168 ~~~ll~~~~l~lp~~~~~~~~~~~~~~-----------------------------------------------------  194 (400)
T PF03825_consen  168 LSLLLAGFALFLPKTPPKRSAKESVKK-----------------------------------------------------  194 (400)
T ss_pred             HHHHHHHHHHhCCCCccccccCCCccc-----------------------------------------------------
Confidence            554444445566766421000000000                                                     


Q ss_pred             CchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccC
Q 013655          271 DSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSG  350 (439)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  350 (439)
                                             ....+...+++++....+++..+........+   ..+.+.+..+.         .|
T Consensus       195 -----------------------~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~---~~f~~~yl~~~---------gg  239 (400)
T PF03825_consen  195 -----------------------LLGLDALKLLKNPRFLVFLLAAFLIGISHAAY---YTFFSIYLQEL---------GG  239 (400)
T ss_pred             -----------------------ccchHHHHHhcCccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHc---------cc
Confidence                                   00002234555544444444333333222222   22233333221         11


Q ss_pred             CCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-cccchhhhHH----HHHHhhhhhee
Q 013655          351 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ-QPKGLTTGLL----FGARICITVTF  425 (439)
Q Consensus       351 ~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~g~~~~~~~  425 (439)
                      .+....+...++..+.+++.-...+++..|+|.++++.++.+..++=..++... ++.+......    .+-|+.++..+
T Consensus       240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~  319 (400)
T PF03825_consen  240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH  319 (400)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence            334445667778888999999999999999999999999999999988887766 4444333333    34788888888


Q ss_pred             eeeeeeccccccCC
Q 013655          426 TVVYVYAPEVSHRS  439 (439)
Q Consensus       426 ~~~~~~~~e~~p~~  439 (439)
                      .....++.+..|++
T Consensus       320 ~a~~~yi~~~~p~~  333 (400)
T PF03825_consen  320 AASVRYIDRIAPPE  333 (400)
T ss_pred             HHHHHHHHHhCCcc
Confidence            88888999988875

>PRK11462 putative transporter; Provisional

Probab=99.74  E-value=1.3e-15  Score=148.84  Aligned_cols=150  Identities=12%  Similarity=0.054  Sum_probs=110.5

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh----cchhHH-HHHHHHHHHHHHHHHhhcch------H
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN----FGRRKG-FLITAIVTSAAGLLSAFAPN------Y  117 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~-~~~~~~~~~~~~~~~~~~~~------~  117 (439)
                      .++..++.+..|+++..+|.+..+.-+.-++..|+.|.++||    +||||. ++++.+..+++..++...|+      .
T Consensus        30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~  109 (460)
T PRK11462         30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM  109 (460)
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            445566778899999999999999999999999999999996    687665 45666777777666554442      3


Q ss_pred             HHHHHHHHHHhhccCcc-hhhHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-------cchhHHHHHh
Q 013655          118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIP-APNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-------LGWRWLLGLS  188 (439)
Q Consensus       118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-------~g~~~~~~~~  188 (439)
                      ..+.+..++..++.... .+..++..|..+ +++|++..++...+..+|..+++.+...+.+.       .+|+....+.
T Consensus       110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~  189 (460)
T PRK11462        110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL  189 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            34455556667777776 556688888886 67899999999999999888887776554433       2467666666


Q ss_pred             HHHHHHHHHH
Q 013655          189 AFPSSLLLLL  198 (439)
Q Consensus       189 ~~~~~~~~~~  198 (439)
                      +++.+++.++
T Consensus       190 ~ii~~i~~~i  199 (460)
T PRK11462        190 SVVAFMMLAF  199 (460)
T ss_pred             HHHHHHHHHH
Confidence            6655554433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.71  E-value=1.7e-15  Score=149.76  Aligned_cols=184  Identities=16%  Similarity=0.081  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH---HhhcchHH
Q 013655           43 MEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL---SAFAPNYY  118 (439)
Q Consensus        43 ~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~---~~~~~~~~  118 (439)
                      ...+....+.|.+. +++|.+..+.++......++..++.++.|+++||+|||+++..+.++..++.+.   ...+++..
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIG  343 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            34444455566554 668999888888888889999999999999999999999988777644433222   22344577


Q ss_pred             HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHhHHHHHHHH
Q 013655          119 LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-GWRWLLGLSAFPSSLLL  196 (439)
Q Consensus       119 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~-g~~~~~~~~~~~~~~~~  196 (439)
                      .+++++++.|++.+.. .....++.|.+|++.||+++|+......+++.++|.+.+++.+.. +|+.++++..+++++.+
T Consensus       344 ~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~  423 (490)
T PRK10642        344 LIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL  423 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            7788888888876655 556677889999999999999855445666788999999888754 47777766666777766


Q ss_pred             HHHhcccCCchhhhhc-----cchHHHHHHHHHHH
Q 013655          197 LLYSVTPESPRYLCLK-----GRTAEARHVLEKIA  226 (439)
Q Consensus       197 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  226 (439)
                      +..+++||+|++..++     ++.+|+++.+++++
T Consensus       424 ~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        424 ITGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            6677789999876644     66677777766654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.70  E-value=2.2e-15  Score=140.88  Aligned_cols=319  Identities=13%  Similarity=0.114  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH--H-HHHHH
Q 013655           35 GMGWISEAMEMMLLSFVGPAVQS-LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT--S-AAGLL  110 (439)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~--~-~~~~~  110 (439)
                      ...++..++.+....++.+...+ ..|+|.+++|.+.++..+...+.+|+.|.++||.|.||-++....+.  . ...+.
T Consensus        13 s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~   92 (412)
T PF01306_consen   13 SLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFI   92 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33444445555565666665554 58999999999999999999999999999999999666544332222  1 22222


Q ss_pred             Hhhc----chHH-HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 013655          111 SAFA----PNYY-LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL  184 (439)
Q Consensus       111 ~~~~----~~~~-~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~  184 (439)
                      ..+.    .|.+ ..+++-+..|+..... ++.-+++.+..  ++.+.-.|-.-..+++|.+++..++|.+.+ .+-+..
T Consensus        93 ~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~  169 (412)
T PF01306_consen   93 YVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNII  169 (412)
T ss_dssp             HTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHH
Confidence            2222    2222 2222223333333333 33334444332  334555677888999999999999999886 455667


Q ss_pred             HHHhHHHHHHHHHHHhcc-cCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCch
Q 013655          185 LGLSAFPSSLLLLLYSVT-PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP  263 (439)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (439)
                      |++..+..++..++.+.. |+.++.....+.. ++                                             
T Consensus       170 fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~-~~---------------------------------------------  203 (412)
T PF01306_consen  170 FWIASAAAIILLLLLLLLKPDVPPQAEVADAL-GA---------------------------------------------  203 (412)
T ss_dssp             HHHHHHHHHHHHHHHHSS---SSSSS-SSTTS-SS---------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHcCCcCchhhhhhccc-cc---------------------------------------------
Confidence            776666555554444333 2221100000000 00                                             


Q ss_pred             hhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHhhcCCCcc
Q 013655          264 KEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFF-GNAFSYYGLVLLTTELNNGQNKC  342 (439)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  342 (439)
                                                ++++.+.....++++.+..+.+.+...... ...........+...+..+    
T Consensus       204 --------------------------~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~----  253 (412)
T PF01306_consen  204 --------------------------KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQS----  253 (412)
T ss_dssp             --------------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS----
T ss_pred             --------------------------CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence                                      000000113455666554444333222211 1111111112222222211    


Q ss_pred             cccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhh
Q 013655          343 VSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICIT  422 (439)
Q Consensus       343 ~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  422 (439)
                            .+.+....+...++..+..++.-.+..++.+|+|.|+.++++..++++=.++..+.++.+.....=.+-++-..
T Consensus       254 ------~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~  327 (412)
T PF01306_consen  254 ------AGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFP  327 (412)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHH
T ss_pred             ------cccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence                  11222334777888888999999999999999999999999999999988888888887776666666666666


Q ss_pred             heeeeeeeeccccccC
Q 013655          423 VTFTVVYVYAPEVSHR  438 (439)
Q Consensus       423 ~~~~~~~~~~~e~~p~  438 (439)
                      ......+-|+++.+|+
T Consensus       328 l~lva~fkYI~~~fd~  343 (412)
T PF01306_consen  328 LLLVAAFKYITAHFDK  343 (412)
T ss_dssp             HHHHHHHHHHHHHS-G
T ss_pred             HHHHHHHHHHHHhCCH
Confidence            6655566666666664

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.69  E-value=6.4e-14  Score=135.89  Aligned_cols=292  Identities=15%  Similarity=0.107  Sum_probs=187.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH-HHHHHHHHHHHHhhc-c-hHHHHHHHHHHHhhccCcc-hhhHH
Q 013655           64 NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLI-TAIVTSAAGLLSAFA-P-NYYLLLFFRCLVGLGLGGG-PVLAS  139 (439)
Q Consensus        64 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~-~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~G~~~g~~-~~~~~  139 (439)
                      +..++..++..+..++..|+.|.++|+-|+||.++. ...+..++..++.+. + +++...+..++.-++.+.. ....+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678889999999999999999999987766554 444444555555553 3 3444455555555666666 44558


Q ss_pred             HHhhhcCCCch--------------------------hhHHHHHHHHHHHHHHHHHHHHHHhhcc--------cchhHHH
Q 013655          140 WFLEFIPAPNR--------------------------GFWMVIFQTFWTVGTILEAGIAWLVMPR--------LGWRWLL  185 (439)
Q Consensus       140 ~~~~~~~~~~r--------------------------g~~~~~~~~~~~~g~~i~~~l~~~l~~~--------~g~~~~~  185 (439)
                      ++.+..+++++                          ++..+.-...+.+|+++...+.-.+...        .+.|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999888                          9999998888888888777765554321        2357777


Q ss_pred             HHhHHHHHHH-HHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchh
Q 013655          186 GLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK  264 (439)
Q Consensus       186 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (439)
                      .+.++.-++. ....+++|+.|+....+....-.+...+++.                                      
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~--------------------------------------  271 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLW--------------------------------------  271 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHH--------------------------------------
Confidence            7777665554 4456677777542111111111111122211                                      


Q ss_pred             hhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHhhcCCCcc
Q 013655          265 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFF--GNAFSYYGLVLLTTELNNGQNKC  342 (439)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  342 (439)
                                                      ..++++.+.+....+++..+++.  .+++...+..+-...        
T Consensus       272 --------------------------------~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~--------  311 (477)
T PF11700_consen  272 --------------------------------RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEV--------  311 (477)
T ss_pred             --------------------------------HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence                                            13444444333344444433333  222222222222222        


Q ss_pred             cccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHhh--------ccccchhhh
Q 013655          343 VSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK--LSMSSMFFCCCIFLVPLLF--------QQPKGLTTG  412 (439)
Q Consensus       343 ~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  412 (439)
                            .|++..+......+..+..++|.++.|++.||+|.|  +++..+.++..+..+.-.+        .++.+.+++
T Consensus       312 ------lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~  385 (477)
T PF11700_consen  312 ------LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWV  385 (477)
T ss_pred             ------cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHH
Confidence                  336666667777788899999999999999999988  7777766666443333232        456677888


Q ss_pred             HHHHHHhhhhheeeeeeeeccccccCC
Q 013655          413 LLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       413 ~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      +.++.|++.|+.++..-++.+|+.|++
T Consensus       386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g  412 (477)
T PF11700_consen  386 LAVLIGLFMGGIQSASRSLFSRLIPPG  412 (477)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCc
Confidence            888999999999999999999999974

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09848 glucuronide transporter; Provisional

Probab=99.69  E-value=4e-15  Score=145.54  Aligned_cols=297  Identities=12%  Similarity=0.007  Sum_probs=165.2

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc----chhHHH-HHHHHHHHHHHHHH-hh----cch--
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF----GRRKGF-LITAIVTSAAGLLS-AF----APN--  116 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----G~r~~~-~~~~~~~~~~~~~~-~~----~~~--  116 (439)
                      .++.+++.+.+|++..++|.+..+..+..++..++.|+++||.    ||||.. ..+.+...+...+. ..    .++  
T Consensus        29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (448)
T PRK09848         29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK  108 (448)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence            4455677788899999999999999999999999999999996    777654 45555444333332 21    111  


Q ss_pred             HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCC-CchhhHHHHHHHHHH-----HHHHHHHHHHHHhhccc--chhHHHHH
Q 013655          117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPA-PNRGFWMVIFQTFWT-----VGTILEAGIAWLVMPRL--GWRWLLGL  187 (439)
Q Consensus       117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~-~~rg~~~~~~~~~~~-----~g~~i~~~l~~~l~~~~--g~~~~~~~  187 (439)
                      .+.+++..++.+++.+.. ++..++..+...+ ++|.+..+....+.+     ++..++|.+.+...+..  +|.....+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~  188 (448)
T PRK09848        109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIV  188 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            223344456667777766 5555666665544 678888777655433     44455555554332111  12111122


Q ss_pred             hHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhh
Q 013655          188 SAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEM  266 (439)
Q Consensus       188 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (439)
                      .+++.++..++ ....+|++..     +.++                                                 
T Consensus       189 ~~v~~~~~~~~~~~~~~e~~~~-----~~~~-------------------------------------------------  214 (448)
T PRK09848        189 LAIAGMVLYFICFKSTRENVVR-----IVAQ-------------------------------------------------  214 (448)
T ss_pred             HHHHHHHHHHHHHcCcEeccCC-----CccC-------------------------------------------------
Confidence            22222222111 2222332100     0000                                                 


Q ss_pred             cccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccc
Q 013655          267 ARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNE  346 (439)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (439)
                                                .+-...++.+++++......+..+..+   ..+.......+.+..+.       
T Consensus       215 --------------------------~~~~~~~~~l~~n~~f~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------  258 (448)
T PRK09848        215 --------------------------PSLKISLQTLKRNRPLFMLCIGALCVL---ISTFAVSASSLFYVRYV-------  258 (448)
T ss_pred             --------------------------CCHHHHHHHHhCCchHHHHHHHHHHHH---HHHHHHhhhheeeEeee-------
Confidence                                      000114566676555443333332222   22222222334333221       


Q ss_pred             cccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc--ccchhhhHHHHHHhhhhhe
Q 013655          347 LQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ--PKGLTTGLLFGARICITVT  424 (439)
Q Consensus       347 ~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~  424 (439)
                        .+.+............++.+++.++.+++.||+|+|+.+..+.++.+++.+.+.+.+  +.+...+..++.+++.+..
T Consensus       259 --~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~  336 (448)
T PRK09848        259 --LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT  336 (448)
T ss_pred             --cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence              122222223333333566778999999999999999999999888877766665543  2334444556677787777


Q ss_pred             eeeeeeecccccc
Q 013655          425 FTVVYVYAPEVSH  437 (439)
Q Consensus       425 ~~~~~~~~~e~~p  437 (439)
                      .+...++.+|..|
T Consensus       337 ~~~~~al~~~~~~  349 (448)
T PRK09848        337 MTVMWALEADTVE  349 (448)
T ss_pred             HHHHHHHHHHhhh
Confidence            7777777776654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.68  E-value=1.2e-14  Score=137.22  Aligned_cols=303  Identities=16%  Similarity=0.115  Sum_probs=202.2

Q ss_pred             HHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh----cchhHH-HHHHHHHHHHHHHHHhhcch-----
Q 013655           47 LLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN----FGRRKG-FLITAIVTSAAGLLSAFAPN-----  116 (439)
Q Consensus        47 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~-~~~~~~~~~~~~~~~~~~~~-----  116 (439)
                      ...+++-++.+..|+++..+|.+..+.-+.-++..|+.|.++||    +||+|. ++.+.+..++...++..+++     
T Consensus        31 ~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~  110 (467)
T COG2211          31 VVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTG  110 (467)
T ss_pred             HHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCc
Confidence            33445556788899999999999999999999999999999996    677555 56677778887777776663     


Q ss_pred             -HHHHHHHHHHHhhccCcc-hhhHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-------ccchhHHHH
Q 013655          117 -YYLLLFFRCLVGLGLGGG-PVLASWFLEFIP-APNRGFWMVIFQTFWTVGTILEAGIAWLVMP-------RLGWRWLLG  186 (439)
Q Consensus       117 -~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-------~~g~~~~~~  186 (439)
                       ....++...+.+++.... .+..++.++..+ +++|.+..+..+.+.++|..+...+...+..       ..||+....
T Consensus       111 k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~  190 (467)
T COG2211         111 KLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTAL  190 (467)
T ss_pred             chHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence             445667778888888887 555577788774 5789999999999999997776666555543       346777777


Q ss_pred             HhHHHHHHHHHHH-hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhh
Q 013655          187 LSAFPSSLLLLLY-SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKE  265 (439)
Q Consensus       187 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (439)
                      +.+++.++..+.. +-.+|++....   ..++                                                
T Consensus       191 ~~~vi~~i~~l~~~~~v~ER~~~~~---~~~~------------------------------------------------  219 (467)
T COG2211         191 VLGVIGVILLLFCFFNVKERVVETQ---PTKT------------------------------------------------  219 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCccc---cCcc------------------------------------------------
Confidence            7777666665543 33444321000   0000                                                


Q ss_pred             hcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccccc
Q 013655          266 MARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSN  345 (439)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (439)
                                   +.        +   +.....+..+++++.++...+..++.++......+...+...+.         
T Consensus       220 -------------~~--------~---~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~---------  266 (467)
T COG2211         220 -------------GV--------K---LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV---------  266 (467)
T ss_pred             -------------cc--------c---ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE---------
Confidence                         00        0   00001344555554433333333333322222222212211111         


Q ss_pred             ccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc--ccchhhhHHHHHHhhhhh
Q 013655          346 ELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ--PKGLTTGLLFGARICITV  423 (439)
Q Consensus       346 ~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~  423 (439)
                         .|.+...............+++.++...+.+|+|+|+++.++.++.+++.+++.+.+  +.++.++..++.+++.+.
T Consensus       267 ---lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~  343 (467)
T COG2211         267 ---LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGI  343 (467)
T ss_pred             ---cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhc
Confidence               223333345666677777778899999999999999999999999999988888766  344555666788899999


Q ss_pred             eeeeeeeeccccc
Q 013655          424 TFTVVYVYAPEVS  436 (439)
Q Consensus       424 ~~~~~~~~~~e~~  436 (439)
                      ..++.|++++|..
T Consensus       344 ~~~l~wam~~d~v  356 (467)
T COG2211         344 ANPLPWAMVADTV  356 (467)
T ss_pred             cccccHHHhcchh
Confidence            9999999998875

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.67  E-value=3.9e-14  Score=130.42  Aligned_cols=327  Identities=13%  Similarity=0.059  Sum_probs=224.8

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 013655           22 GFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITA  101 (439)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~  101 (439)
                      +..++||.++..+.+..+.+++.+..+++...+...-+| +....-|...++.+.+....+++-|+.|++|-|....++.
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            355778888888888888888888888887778888888 8888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc------hHH--HHHHHHHHHhhccCcch-hhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013655          102 IVTSAAGLLSAFAP------NYY--LLLFFRCLVGLGLGGGP-VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA  172 (439)
Q Consensus       102 ~~~~~~~~~~~~~~------~~~--~~~~~~~l~G~~~g~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~  172 (439)
                      .+.+++..+-..+.      .++  ....+..+.+.+.-... .......-|+++++|..+..+-..++.+|.+++.++.
T Consensus       117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp  196 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP  196 (480)
T ss_pred             HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence            99999988765542      344  56677777777777663 3345667889999999999999999999999988888


Q ss_pred             HHhhccc------chhHH--HHHhHHHHHHHHHHH-hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchh
Q 013655          173 WLVMPRL------GWRWL--LGLSAFPSSLLLLLY-SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWE  243 (439)
Q Consensus       173 ~~l~~~~------g~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (439)
                      ..+..+-      .|...  |+...++..+.+++. +..++.|+......+.   .  .+                    
T Consensus       197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~---~--~~--------------------  251 (480)
T KOG2563|consen  197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQA---A--LQ--------------------  251 (480)
T ss_pred             ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHh---h--hh--------------------
Confidence            8776543      35553  443333333333322 2223333211000000   0  00                    


Q ss_pred             hhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHH
Q 013655          244 HELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAF  323 (439)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  323 (439)
                                                                      +.+-..+++.+++++   .+++..+.+..+..
T Consensus       252 ------------------------------------------------~~~f~~si~~~~~n~---~F~il~~~ygi~~g  280 (480)
T KOG2563|consen  252 ------------------------------------------------DASFPKSIKSCFKNR---QFIILAICYGIGLG  280 (480)
T ss_pred             ------------------------------------------------cCcHHHHHHHHHcCc---cHHHHHHHHhhhHH
Confidence                                                            000112566666653   34556666666667


Q ss_pred             hhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHh
Q 013655          324 SYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGR-KLSMSSMFFCCCIFLVPLL  402 (439)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~  402 (439)
                      .+++.+..+......          .|++...++.......+++++|.++.|.+.||.+. |.++.+......++.+.+.
T Consensus       281 ~F~~l~~~l~~~l~~----------sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~  350 (480)
T KOG2563|consen  281 LFNSLSTLLNLALCP----------SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLL  350 (480)
T ss_pred             HHHHHHHHhhhcccc----------ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            777777666533322          33555566888888899999999999999999864 5555555555444422222


Q ss_pred             -h---ccccchhhhHHHHHHhhhhheeeeeeeecccc
Q 013655          403 -F---QQPKGLTTGLLFGARICITVTFTVVYVYAPEV  435 (439)
Q Consensus       403 -~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~  435 (439)
                       .   ..+.+.......+.|++..+.+|+..-+..|.
T Consensus       351 ~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~  387 (480)
T KOG2563|consen  351 TCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVET  387 (480)
T ss_pred             HhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeee
Confidence             1   22345556667788888889899888887776

>TIGR01272 gluP glucose/galactose transporter

Probab=99.66  E-value=4.3e-15  Score=137.34  Aligned_cols=237  Identities=12%  Similarity=0.053  Sum_probs=163.6

Q ss_pred             hcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-------------
Q 013655          113 FAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-------------  178 (439)
Q Consensus       113 ~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-------------  178 (439)
                      ...+++.++++.++.|.|.+.. +...+++++..+++++++.+++.+.++++|..++|.+++.+...             
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4568999999999999999999 88889999999999999999999999999999999999987732             


Q ss_pred             ---cchhHHHHHhHHHHHHHHHHHhcc--cCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccC
Q 013655          179 ---LGWRWLLGLSAFPSSLLLLLYSVT--PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLS  253 (439)
Q Consensus       179 ---~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (439)
                         .+|+.+|++.++..++..+.+.+.  ||.+      ++.++  +    .                            
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~------~~~~~--~----~----------------------------  125 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQ------EADVA--R----V----------------------------  125 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC------ccccc--c----c----------------------------
Confidence               468999887766655554444443  3210      00000  0    0                            


Q ss_pred             CCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 013655          254 SSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT  333 (439)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (439)
                                          ++ ++..                 ..+..++.   +..++..+..++......+...|.+
T Consensus       126 --------------------~~-~~~~-----------------~~~~~~~~---~~~~l~~~~~f~yvg~e~~~~~w~~  164 (310)
T TIGR01272       126 --------------------SS-GDTT-----------------QKTSAFQF---THLVLGALGIFVYVGAEVSAGSFLV  164 (310)
T ss_pred             --------------------cc-cccc-----------------chhhHHhh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                00 0000                 00011222   2233344444444445556667777


Q ss_pred             HhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhH
Q 013655          334 ELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGL  413 (439)
Q Consensus       334 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (439)
                      .|..+..       ..|.+....+...+.+..+.++|+++++++.||+|+|+.+..+..+++++.++....+. ......
T Consensus       165 ~yl~~~~-------~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~-~~~~~~  236 (310)
T TIGR01272       165 NFLSDPH-------ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG-YVAMWF  236 (310)
T ss_pred             HHHHhcc-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence            7774321       13467777788899999999999999999999999988888887777776655544433 233445


Q ss_pred             HHHHHhhhhheeeeeeeeccccccC
Q 013655          414 LFGARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       414 ~~~~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      .++.|++.+..+|...+...+.+|+
T Consensus       237 ~~l~g~~~s~i~P~~~s~a~~~~~~  261 (310)
T TIGR01272       237 VLALGLFNSIMFPTIFSLALNALGR  261 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            6678899999999988887776664

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.62  E-value=4.1e-14  Score=132.51  Aligned_cols=153  Identities=18%  Similarity=0.191  Sum_probs=134.5

Q ss_pred             HHHHHhhhcC----CCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHHHHhhcc--hHHHHHHH
Q 013655           51 VGPAVQSLWH----LSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGLLSAFAP--NYYLLLFF  123 (439)
Q Consensus        51 ~~~~~~~~~~----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  123 (439)
                      +.-|+..+++    +|.+++.-+.+++.....+..+++||++||+ |+|+++++|.++.+++.++.+..+  +...+.++
T Consensus        44 L~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~  123 (498)
T COG3104          44 LILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIG  123 (498)
T ss_pred             HHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHH
Confidence            3344555555    9999999999999888889999999999995 999999999999999999999884  78889999


Q ss_pred             HHHHhhccCcc-hhhHHHHhhhcCCC--chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHh
Q 013655          124 RCLVGLGLGGG-PVLASWFLEFIPAP--NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYS  200 (439)
Q Consensus       124 ~~l~G~~~g~~-~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  200 (439)
                      ..+.++|.|.. +...+++.|.+|++  +|-..++++..+.++|+.++|.+.+++.+++||+..|...++-..+.++.+.
T Consensus       124 L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~  203 (498)
T COG3104         124 LALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL  203 (498)
T ss_pred             HHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 88889999999764  4777888899999999999999999999999999999999988888877766


Q ss_pred             ccc
Q 013655          201 VTP  203 (439)
Q Consensus       201 ~~~  203 (439)
                      ..+
T Consensus       204 ~~~  206 (498)
T COG3104         204 LGR  206 (498)
T ss_pred             Hcc
Confidence            654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.61  E-value=2.1e-14  Score=138.79  Aligned_cols=156  Identities=14%  Similarity=0.102  Sum_probs=126.3

Q ss_pred             HHHHHHhhhcCCC--------chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc----hH
Q 013655           50 FVGPAVQSLWHLS--------PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP----NY  117 (439)
Q Consensus        50 ~~~~~~~~~~~~s--------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~  117 (439)
                      .+.+.+.++.|.+        .+..+.+.++..++..++.++.|+++||+|+|+++..+.++.+++..+.....    ++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            3345455556644        36679999999999999999999999999999999999999888876666532    24


Q ss_pred             HHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhcc------cchhHHHHHhH
Q 013655          118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQ-TFWTVGTILEAGIAWLVMPR------LGWRWLLGLSA  189 (439)
Q Consensus       118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~-~~~~~g~~i~~~l~~~l~~~------~g~~~~~~~~~  189 (439)
                      +.+++.+++.|++.+.. +....++.|++|+++|++++|+.+ ...++|..+||+++|++.+.      +||+..|.+.+
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            56677889999998877 666788899999999999999997 67889999999999999887      46999999888


Q ss_pred             HHHHHHHHH-HhcccCC
Q 013655          190 FPSSLLLLL-YSVTPES  205 (439)
Q Consensus       190 ~~~~~~~~~-~~~~~~~  205 (439)
                      ++.++..++ .++++|+
T Consensus       389 ~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            777766554 5556665

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.60  E-value=2.6e-14  Score=136.31  Aligned_cols=148  Identities=20%  Similarity=0.109  Sum_probs=125.1

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHH
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNY--YLLLFFRCL  126 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l  126 (439)
                      ....+.+.++++.+..+.+++.+...++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.  ..+++..++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T TIGR00890       225 IGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL  304 (377)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence            334455667789999999999999999999999999999999999999999988888888777766543  334456677


Q ss_pred             HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHH
Q 013655          127 VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL  196 (439)
Q Consensus       127 ~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~  196 (439)
                      .|++.+.. .....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||+..|.+.+++.+++.
T Consensus       305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            78887776 56667889999999999999999999999999999999999999999999988887766643

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.60  E-value=5.3e-14  Score=142.67  Aligned_cols=139  Identities=13%  Similarity=0.099  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhc
Q 013655           67 SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFI  145 (439)
Q Consensus        67 g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~  145 (439)
                      .+...+..++.+++.+++|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.+.. ++..++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677899999999999999999999999999999999999888888878888888888877766 77778999999


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCCc
Q 013655          146 PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESP  206 (439)
Q Consensus       146 ~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (439)
                      |++.|++++|+.+....+|.+++|.+++.+.+. +...+|++.+++.+++.++.+++||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999988764 456778877777777777777778863

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.60  E-value=8.1e-14  Score=133.96  Aligned_cols=154  Identities=14%  Similarity=0.111  Sum_probs=125.3

Q ss_pred             HHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655           50 FVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG  128 (439)
Q Consensus        50 ~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  128 (439)
                      ...| ++.+++|.+..+.+++.+...+...++.+++|+++||+|||+.+..+.....+......+.++++.+++.+++.+
T Consensus       237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  316 (393)
T PRK15011        237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA  316 (393)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3444 455778999999999988888888889999999999999999887776665555555555677777788888888


Q ss_pred             hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccC
Q 013655          129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPE  204 (439)
Q Consensus       129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  204 (439)
                      ++.|.. +....+..|..|+ +||+++++++...++|..++|.+++.+.+.+||+..+.+.+++.++.++..+++||
T Consensus       317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            777765 5555667888875 59999999999999999999999999999999999999888888887777766654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.58  E-value=8.2e-13  Score=119.62  Aligned_cols=178  Identities=21%  Similarity=0.162  Sum_probs=125.7

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655           23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI  102 (439)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~  102 (439)
                      ..+.|+.-+....+    .....+..+++.-.+.+++|+++.+++.+....+....+.+++.|.++||+|||+.-++.++
T Consensus        32 f~~Fqr~yl~vY~L----a~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~ci  107 (354)
T PF05631_consen   32 FRRFQRKYLLVYLL----AMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCI  107 (354)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            33444444433333    33444566666666668899999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHH-hhhc----CCCchhhHHHHHH-HHHHHHHHHHHHHHHHh
Q 013655          103 VTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWF-LEFI----PAPNRGFWMVIFQ-TFWTVGTILEAGIAWLV  175 (439)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~-~~~~----~~~~rg~~~~~~~-~~~~~g~~i~~~l~~~l  175 (439)
                      +.+++++. -..++++.++++|++.|++.... .+--++. .|.-    |++..+..++... ..+++-.+.+..++.++
T Consensus       108 ly~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  108 LYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             HHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            88888864 45688999999999999999988 5444654 4542    3333344444444 34455556667777777


Q ss_pred             hcccch--hHHHHHhHHHHHHHHHHHh-cccCC
Q 013655          176 MPRLGW--RWLLGLSAFPSSLLLLLYS-VTPES  205 (439)
Q Consensus       176 ~~~~g~--~~~~~~~~~~~~~~~~~~~-~~~~~  205 (439)
                      .+..+.  ..+|....++.+++.++.. ..+|+
T Consensus       187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence            776654  6788877777666655443 33444

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=6.7e-14  Score=135.81  Aligned_cols=147  Identities=10%  Similarity=0.014  Sum_probs=125.3

Q ss_pred             hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hh
Q 013655           58 LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PV  136 (439)
Q Consensus        58 ~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~  136 (439)
                      +.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++..++++.+.+++.+++.|++.+.. +.
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            34667788899999999999999999999999999999999999998888888888889998889999999887776 55


Q ss_pred             hHHHHhhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH-hcccC
Q 013655          137 LASWFLEFIPAPNRGFWMVI-FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY-SVTPE  204 (439)
Q Consensus       137 ~~~~~~~~~~~~~rg~~~~~-~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~  204 (439)
                      ...++.+.+|++.|+...+. ++.+..+|..+++++.+++.+.+||+..|.+.+++.++..++. +.+++
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            66888899999999888766 6778899999999999999999999999998887776655443 33443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.58  E-value=1.5e-13  Score=132.84  Aligned_cols=158  Identities=20%  Similarity=0.111  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 013655           45 MMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFR  124 (439)
Q Consensus        45 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (439)
                      ......+.|.+.++.|.+..+.+++.+...++..+++++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+..
T Consensus       236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (406)
T PRK11551        236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAG  315 (406)
T ss_pred             HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            33444556777788899999999999999999999999999999999999998887777777777777777777777777


Q ss_pred             HHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHHHHhcc
Q 013655          125 CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLLLLYSVT  202 (439)
Q Consensus       125 ~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  202 (439)
                      ++.|++.+.. +...++..|.+|+++|+++.|+.+....+|..++|.+.+++.+..+ |...++....+.++..+..+.+
T Consensus       316 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877666 6677888999999999999999999999999999999999988654 5555655555555555544443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.58  E-value=2.1e-15  Score=129.81  Aligned_cols=154  Identities=16%  Similarity=0.147  Sum_probs=124.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHH
Q 013655           27 QLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTS  105 (439)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~  105 (439)
                      |...+..+++..+...+.+..+.....++..+.+++.++..++.+++.....+..+++|++.|| +|-|...++-++...
T Consensus        42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~  121 (459)
T KOG4686|consen   42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF  121 (459)
T ss_pred             HHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence            3444445555556666777777777778888889999999999999999999999999999997 687777666666666


Q ss_pred             HHHHHHh---hcchHHHHHHHHHHHhhccCcchhh-HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655          106 AAGLLSA---FAPNYYLLLFFRCLVGLGLGGGPVL-ASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG  180 (439)
Q Consensus       106 ~~~~~~~---~~~~~~~~~~~~~l~G~~~g~~~~~-~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g  180 (439)
                      ++.+.++   ..+.+|++.++|++.|+|.-...+. ..++..|+..++.+.++|+......+|+.+--.+.+++.+..+
T Consensus       122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence            7776665   4578999999999999998777544 4888899999999999999999999999888777887766543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.58  E-value=1.6e-14  Score=117.04  Aligned_cols=132  Identities=20%  Similarity=0.301  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCC
Q 013655           70 TSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP  148 (439)
Q Consensus        70 ~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~  148 (439)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+.. +....++.|..|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567788899999999999999999999999999998888888899999999999999998887 67778899999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655          149 NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV  201 (439)
Q Consensus       149 ~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  201 (439)
                      +|++..++.+....+|..+++.+.+++.+..+|+..+++.++..++..+...+
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999998888777766555433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.56  E-value=3.6e-13  Score=127.05  Aligned_cols=163  Identities=29%  Similarity=0.335  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhH-HHHHHHHHHHHHHHHHhhcch
Q 013655           39 ISEAMEMMLLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK-GFLITAIVTSAAGLLSAFAPN  116 (439)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~-~~~~~~~~~~~~~~~~~~~~~  116 (439)
                      +.............|.+.++ +|.+..+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+.....++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  264 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS  264 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            33344444445556666555 4999999999999999999999999999999999999 999999999999999998888


Q ss_pred             HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655          117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL  195 (439)
Q Consensus       117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~  195 (439)
                      .+...+..++.|++.+.. +....++.|..|+++|++.+|+.+....+|..+++.+.+.+.+..+|+..+.+.+++.++.
T Consensus       265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~  344 (352)
T cd06174         265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA  344 (352)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHH
Confidence            899999999999999988 7788999999999999999999999999999999999999999999999999999888887


Q ss_pred             HHHHhc
Q 013655          196 LLLYSV  201 (439)
Q Consensus       196 ~~~~~~  201 (439)
                      .+....
T Consensus       345 ~i~~~~  350 (352)
T cd06174         345 ALLLLL  350 (352)
T ss_pred             HHHhee
Confidence            766544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.55  E-value=4.1e-13  Score=129.47  Aligned_cols=155  Identities=17%  Similarity=0.190  Sum_probs=128.7

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG  128 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  128 (439)
                      ..+.+.+.++.|.  ...++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|
T Consensus       236 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  313 (399)
T PRK05122        236 ATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG  313 (399)
T ss_pred             HHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3344444455565  34566778888899999999999999999999999888888888888888888888888899999


Q ss_pred             hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCC
Q 013655          129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPES  205 (439)
Q Consensus       129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  205 (439)
                      ++.+.. +.......+..|+++||++.|+++....+|..+++++.+++.+..||+..+++.+++.++..+..+.++++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            998877 55567778899999999999999999999999999999999999999999999888887776665555444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.54  E-value=3.6e-13  Score=132.42  Aligned_cols=172  Identities=16%  Similarity=0.126  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL  109 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  109 (439)
                      ++...+..++..........+.|. +.+++|+|..+.++..+...++..++.+++|+++||+|||+.+.....+..++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~  339 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT  339 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            333444444444444445556664 5577999999999999999999999999999999999999877665444433322


Q ss_pred             --HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHH-HHHHHHHHHHHhhc--------
Q 013655          110 --LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTV-GTILEAGIAWLVMP--------  177 (439)
Q Consensus       110 --~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~i~~~l~~~l~~--------  177 (439)
                        .....++.+...+.+++.|++.... ........|.+|++.||++.|+.+....+ |..++|.+.|++.+        
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~  419 (467)
T PRK09556        340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI  419 (467)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence              2233456666667777888654333 33345667999999999999999988886 77999999999999        


Q ss_pred             ----ccchhHHHHHhHHHHHHHHHHHhcc
Q 013655          178 ----RLGWRWLLGLSAFPSSLLLLLYSVT  202 (439)
Q Consensus       178 ----~~g~~~~~~~~~~~~~~~~~~~~~~  202 (439)
                          ..||+..|++..++.+++.+..+++
T Consensus       420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        420 FGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence                5789999988877777766555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.54  E-value=4.1e-13  Score=128.56  Aligned_cols=151  Identities=11%  Similarity=0.028  Sum_probs=130.5

Q ss_pred             HHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 013655           47 LLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL  126 (439)
Q Consensus        47 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  126 (439)
                      ....+.|.+.+++|.++.+.|++.+...++..++.++.+++.||+|+|+.+.++.+..++...+.++.++.+.+++..++
T Consensus       223 ~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l  302 (382)
T TIGR00902       223 AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQIL  302 (382)
T ss_pred             HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence            33344555557799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH
Q 013655          127 VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQ-TFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY  199 (439)
Q Consensus       127 ~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~-~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~  199 (439)
                      .|++.+.. +....++.+. |+++|+++.++++ ...++|..+++.++|++.|.+|+ ..|+..+++.++.+++.
T Consensus       303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            99999998 7777888887 9999999999976 57889999999999999999986 56666666666554443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.54  E-value=8.3e-13  Score=126.11  Aligned_cols=150  Identities=15%  Similarity=0.148  Sum_probs=125.4

Q ss_pred             HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccC
Q 013655           53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLG  132 (439)
Q Consensus        53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g  132 (439)
                      .++.+++|.++.+.+++.+...+...++.++.|++.||+|||+.+..+.++..+......+.++.+.+.+.+++.|++.+
T Consensus       224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  303 (375)
T TIGR00899       224 LLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG  303 (375)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34457789999999998888888888889999999999999999888877766666666666778888888888898888


Q ss_pred             cc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhccc
Q 013655          133 GG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTP  203 (439)
Q Consensus       133 ~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  203 (439)
                      .. +....++.|..|+ ++++++++++....+|..++|.+.+++.+..||+..+++.+++.++..+...+++
T Consensus       304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       304 ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence            76 6666777888775 5679999999999999999999999999999999999998888887777666554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.53  E-value=2.1e-12  Score=118.53  Aligned_cols=290  Identities=15%  Similarity=0.070  Sum_probs=189.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH-HHHHHHHHHHHHHhhcch--H-HHHHHHHHHHhhccCcch-hhH
Q 013655           64 NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFL-ITAIVTSAAGLLSAFAPN--Y-YLLLFFRCLVGLGLGGGP-VLA  138 (439)
Q Consensus        64 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~~~~~~~~--~-~~~~~~~~l~G~~~g~~~-~~~  138 (439)
                      +..|...++..+..++.+|+.|.++|+.|+||..+ ....+..++..+..+.++  + +..++...+..++..... ...
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            45678888999999999999999999999776654 444455555555556544  4 444555667777777764 455


Q ss_pred             HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH--Hh-h---------------cccchhHHHHHhHHHHHHHHH-HH
Q 013655          139 SWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW--LV-M---------------PRLGWRWLLGLSAFPSSLLLL-LY  199 (439)
Q Consensus       139 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~--~l-~---------------~~~g~~~~~~~~~~~~~~~~~-~~  199 (439)
                      +++.+..++++-++..++-.....+|+.+.-.+.-  .+ .               +...-|..+.+.++..++..+ .+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            89999999999888888866666666655444321  11 1               122356677777766655544 34


Q ss_pred             hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhc
Q 013655          200 SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEM  279 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (439)
                      +..++.++..  .......+...++                                                       
T Consensus       218 ~~v~~~~~~~--~~~~~~l~~g~k~-------------------------------------------------------  240 (438)
T COG2270         218 LNVHDAEKIS--SPPPTALRNGFKE-------------------------------------------------------  240 (438)
T ss_pred             hccccccccc--ccchHHHHHHHHH-------------------------------------------------------
Confidence            4444443210  0000011111111                                                       


Q ss_pred             cccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCch
Q 013655          280 KSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFF--GNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINY  357 (439)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  357 (439)
                                     -+.+++++++++....+++..+.+.  .++....+..+-...              .|.+.....
T Consensus       241 ---------------L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~--------------~gls~~~ll  291 (438)
T COG2270         241 ---------------LKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD--------------LGLSSTELL  291 (438)
T ss_pred             ---------------HHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH--------------cCccHHHHH
Confidence                           1225666665555555555544443  233322222222222              235555667


Q ss_pred             hhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeecccccc
Q 013655          358 GDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSH  437 (439)
Q Consensus       358 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p  437 (439)
                      .......+..++|+++.|++.||+|.|+++..+.++..+..+...+.......+++..+.|++.|+.++..=++.++++|
T Consensus       292 l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp  371 (438)
T COG2270         292 LIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVP  371 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCC
Confidence            77778889999999999999999999999999998888888777777666667777888999999999999999999998


Q ss_pred             CC
Q 013655          438 RS  439 (439)
Q Consensus       438 ~~  439 (439)
                      ++
T Consensus       372 ~~  373 (438)
T COG2270         372 KG  373 (438)
T ss_pred             Cc
Confidence            74

>PRK03545 putative arabinose transporter; Provisional

Probab=99.52  E-value=3.1e-12  Score=122.90  Aligned_cols=151  Identities=17%  Similarity=0.140  Sum_probs=121.1

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHH
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAG-LLSAFAPNYYLLLFFRCLV  127 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~  127 (439)
                      ....|++.+++|.|..+.+++.+...++..+++++.|++.||+|||+... +..+..++. .+....++.+.++++.++.
T Consensus       226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  304 (390)
T PRK03545        226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFW  304 (390)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            34445566678999999999999999999999999999999999887544 444444443 3344567788888888899


Q ss_pred             hhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655          128 GLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV  201 (439)
Q Consensus       128 G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  201 (439)
                      |++.+.. +.....+.+..| ++|++++|+++....+|..+||.+++++.+.+|++..++..+++.+++++....
T Consensus       305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence            9987766 555567777765 688999999999999999999999999999999999999998888776665443

>TIGR00897 2A0118 polyol permease family

Probab=99.52  E-value=1.2e-12  Score=126.18  Aligned_cols=164  Identities=18%  Similarity=0.154  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH-HHHHHHHHHHHHHh----
Q 013655           38 WISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFL-ITAIVTSAAGLLSA----  112 (439)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~~~~----  112 (439)
                      .+...........+.|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...    
T Consensus       231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~  310 (402)
T TIGR00897       231 RIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ  310 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445556678788889999999999999999999999999999999999888764 33333333322222    


Q ss_pred             -hcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHH
Q 013655          113 -FAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFP  191 (439)
Q Consensus       113 -~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~  191 (439)
                       ..++.+...+..++.|++.+...+....+.+. ++++||++.|+.+....+|..++|.+.+.+.+..||...+++.+++
T Consensus       311 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~  389 (402)
T TIGR00897       311 HFGHSFAVALIIAIALGIFLAGYVPLAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL  389 (402)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence             12456677778888888877663334555665 4568999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHhcc
Q 013655          192 SSLLLLLYSVT  202 (439)
Q Consensus       192 ~~~~~~~~~~~  202 (439)
                      .++..++..++
T Consensus       390 ~~i~~~~~~~~  400 (402)
T TIGR00897       390 YVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHh
Confidence            87776665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.52  E-value=9.6e-13  Score=127.22  Aligned_cols=136  Identities=18%  Similarity=0.165  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhh
Q 013655           66 ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEF  144 (439)
Q Consensus        66 ~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~  144 (439)
                      .+.+.++..++..++.+..|+++||+|||+.+..+..+.+++.+...+.++.+.+.+.+++.|++.+.. +...+.+.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            456667778888899999999999999999999988888887777777788888889999999999887 6666778888


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655          145 IPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV  201 (439)
Q Consensus       145 ~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  201 (439)
                      .|+++||+.+++.+....+|..+||.+++.+.+..||+..|++.+++.++..+..+.
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999998888777665443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.51  E-value=6.1e-13  Score=129.00  Aligned_cols=157  Identities=17%  Similarity=0.130  Sum_probs=131.4

Q ss_pred             HHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 013655           49 SFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLV  127 (439)
Q Consensus        49 ~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (439)
                      ..+.|.+.++ +|.+..+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...++.++.
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALF  322 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            3345555555 899999999999999999999999999999998888888888888888888888888888888888888


Q ss_pred             hhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH-HHHHhcccCC
Q 013655          128 GLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPES  205 (439)
Q Consensus       128 G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~  205 (439)
                      |++.+.. +...+++.+..|++.||+++|++.....+|..+||.+.+++.+.+|++..+++.+++.++. .+....+++.
T Consensus       323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (417)
T PRK10489        323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL  402 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            9888776 5556788899999999999999999999999999999999999999998888777665554 4445555554

>PRK12382 putative transporter; Provisional

Probab=99.49  E-value=1.9e-12  Score=124.50  Aligned_cols=152  Identities=16%  Similarity=0.178  Sum_probs=127.3

Q ss_pred             HHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 013655           48 LSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLV  127 (439)
Q Consensus        48 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (439)
                      ...+.+.+.++.+.+.  .++....+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+..++..++.
T Consensus       235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (392)
T PRK12382        235 IGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT  312 (392)
T ss_pred             HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            3344455555566653  56667778888899999999999999999999999888888888888888888888889999


Q ss_pred             hhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655          128 GLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV  201 (439)
Q Consensus       128 G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  201 (439)
                      |++.+.. +.....+.+..|+++||++.|+.+....+|..++|.+.+++.+..||+..|.+.+++.++..+..+.
T Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            9998877 6666778899999999999999999999999999999999999999999999988887776665443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.48  E-value=5.6e-13  Score=130.43  Aligned_cols=160  Identities=11%  Similarity=0.101  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc--chhHHHHH--HHHHHHHHHHHHhh
Q 013655           38 WISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF--GRRKGFLI--TAIVTSAAGLLSAF  113 (439)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~~~--~~~~~~~~~~~~~~  113 (439)
                      .+...........++|.+.+++|.+..+.+++.++..++..+++++.|+++||.  ++|+...+  +.++.+++.++..+
T Consensus       250 ~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~  329 (455)
T TIGR00892       250 NVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL  329 (455)
T ss_pred             HHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333434444455666677899999999999999999999999999999983  34443333  33444455556667


Q ss_pred             cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHhHHH
Q 013655          114 APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-GWRWLLGLSAFP  191 (439)
Q Consensus       114 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~-g~~~~~~~~~~~  191 (439)
                      .++++.+++.+++.|++.+.. +...+++.|.+|++++++.+|+++...++|..++|.+++.+.+.. +|+..|++.+++
T Consensus       330 ~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~  409 (455)
T TIGR00892       330 AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSI  409 (455)
T ss_pred             hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHH
Confidence            788888889999999998887 667788899999999999999999999999999999999999877 499999888877


Q ss_pred             HHHHHH
Q 013655          192 SSLLLL  197 (439)
Q Consensus       192 ~~~~~~  197 (439)
                      .+++.+
T Consensus       410 ~li~~~  415 (455)
T TIGR00892       410 VVSAGL  415 (455)
T ss_pred             HHHHHH
Confidence            665544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.47  E-value=3.7e-12  Score=121.93  Aligned_cols=151  Identities=16%  Similarity=0.134  Sum_probs=121.4

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG  128 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  128 (439)
                      ..+.|.+.++.|.+..+.+++.+...++..+++++.|++.||+|+|+++..+..+.+++.+...  + ........++.|
T Consensus       220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g  296 (381)
T PRK03633        220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG  296 (381)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence            3456777777899999999999999999999999999999999999998888777777665443  2 223344566677


Q ss_pred             hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcc
Q 013655          129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVT  202 (439)
Q Consensus       129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  202 (439)
                      ++.+.. +...+.+.|..|+++++...+..+...++|..++|.+++++.+++||+..|.+.+.+.++..+..+..
T Consensus       297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            765555 77778888999988888888888889999999999999999999999999998888777665554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.46  E-value=1.7e-12  Score=128.92  Aligned_cols=146  Identities=16%  Similarity=0.169  Sum_probs=113.0

Q ss_pred             HHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc--chHHHHHHHHH
Q 013655           49 SFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA--PNYYLLLFFRC  125 (439)
Q Consensus        49 ~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  125 (439)
                      ..+.|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++....  .+.+.+.+..+
T Consensus       295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF  374 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            34556555 6899999999999999999999999999999999999999888877666655443332  33444444444


Q ss_pred             HHhh-ccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHH
Q 013655          126 LVGL-GLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSL  194 (439)
Q Consensus       126 l~G~-~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~  194 (439)
                      +.+. +.+.......++.+.+|+++||+++|+......+|..++|.+++++.+.+||+..+...+....+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            4433 33333556678889999999999999999999999999999999999999999887665544333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.45  E-value=6e-12  Score=120.95  Aligned_cols=163  Identities=17%  Similarity=0.135  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc-hHHHH
Q 013655           42 AMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP-NYYLL  120 (439)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~~  120 (439)
                      .........+.|.+.+++|.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..+.+++.++....+ +...+
T Consensus       218 ~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  297 (393)
T PRK09705        218 NGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL  297 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence            33444455556666667899999999999999999999999999999999999998888877777766554333 22222


Q ss_pred             HHHHHHHhhccCcc-hhhHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHH
Q 013655          121 LFFRCLVGLGLGGG-PVLASWFLEFIP-APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLLL  197 (439)
Q Consensus       121 ~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~  197 (439)
                        ..++.|++.+.. +.......+..+ ++++|+..|+.+....++..++|.+.+++.+..| |...|++.++..++..+
T Consensus       298 --~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (393)
T PRK09705        298 --WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMI  375 (393)
T ss_pred             --HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence              234567777776 555556666665 5789999999999999999999999999999876 77778877766666554


Q ss_pred             H-HhcccCCc
Q 013655          198 L-YSVTPESP  206 (439)
Q Consensus       198 ~-~~~~~~~~  206 (439)
                      . ..+.||++
T Consensus       376 ~~~~~~~~~~  385 (393)
T PRK09705        376 ITLRFAPARF  385 (393)
T ss_pred             HHHHhccccc
Confidence            4 44556653

>PRK03699 putative transporter; Provisional

Probab=99.45  E-value=3.8e-12  Score=122.43  Aligned_cols=165  Identities=11%  Similarity=0.046  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch
Q 013655           38 WISEAMEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN  116 (439)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~  116 (439)
                      .++..........+.|.+. +++|+|..+.+++.+.+.++..++.++.|+++||++||+.+.....+.++...+....++
T Consensus       214 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~  293 (394)
T PRK03699        214 ALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDD  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCC
Confidence            3333333344445556555 678999999999999999999999999999999999999988887777777667667777


Q ss_pred             HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655          117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL  195 (439)
Q Consensus       117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~  195 (439)
                      .+.+.+..++.|++.+.. +...+...+..| +++++..+.......+|..++|.+.+++.+..|++..++..+++.+++
T Consensus       294 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~  372 (394)
T PRK03699        294 PSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVV  372 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHH
Confidence            777777778888877665 555566667665 446778889888899999999999999999999999998888777777


Q ss_pred             HHHHhccc
Q 013655          196 LLLYSVTP  203 (439)
Q Consensus       196 ~~~~~~~~  203 (439)
                      .+..+.++
T Consensus       373 ~~~~~~~~  380 (394)
T PRK03699        373 FVMCILLG  380 (394)
T ss_pred             HHHHHHHH
Confidence            66555544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.44  E-value=3.5e-12  Score=125.69  Aligned_cols=176  Identities=16%  Similarity=0.142  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013655           30 VLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL  109 (439)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  109 (439)
                      .++...+..+...........+.|.+.+++|.+..+.++......++..++.+++|+++||+|||+.+..+.++.+++.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  364 (481)
T TIGR00879       285 LFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF  364 (481)
T ss_pred             HHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            33334444444444444556677888889999998899999999999999999999999999999999988887777766


Q ss_pred             HHhh-----cc------hHHHHHHHHH-HHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655          110 LSAF-----AP------NYYLLLFFRC-LVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP  177 (439)
Q Consensus       110 ~~~~-----~~------~~~~~~~~~~-l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~  177 (439)
                      +..+     .+      +...+....+ ..+++.+..+....++.|.+|+++|++++++.+...++|.+++|.+.+++.+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~  444 (481)
T TIGR00879       365 VLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE  444 (481)
T ss_pred             HHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6552     11      2222222222 2233333335556777999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHhHHHHHHHHHHH-hcccCC
Q 013655          178 RLGWRWLLGLSAFPSSLLLLLY-SVTPES  205 (439)
Q Consensus       178 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~  205 (439)
                      ..+|+..|++.++++++..++. ++.||+
T Consensus       445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       445 SIGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             hcCccceehhHHHHHHHHHHHHheecccC
Confidence            8999999988888877766554 445654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.44  E-value=1.6e-12  Score=124.70  Aligned_cols=156  Identities=19%  Similarity=0.178  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH--HHHhh-
Q 013655           38 WISEAMEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAG--LLSAF-  113 (439)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~--~~~~~-  113 (439)
                      .+...........+.|.+. +++|.+..+.+.+.....++..++.++.|+++||+|||+.+..+..+..+..  +...+ 
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (394)
T TIGR00883       228 VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL  307 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444444445555554 7789999999999999999999999999999999999998775554443322  12222 


Q ss_pred             -cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhH
Q 013655          114 -APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVI-FQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSA  189 (439)
Q Consensus       114 -~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~-~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~  189 (439)
                       .++.+.+.+..++.|++.+.. ++..+.+.|.+|+++|+++.++ .+.+..+|..++|.+++++.+..| |+..++...
T Consensus       308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~  387 (394)
T TIGR00883       308 DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA  387 (394)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence             246667777778888887776 7777899999999999999998 556677899999999999999888 887776666


Q ss_pred             HHHH
Q 013655          190 FPSS  193 (439)
Q Consensus       190 ~~~~  193 (439)
                      +..+
T Consensus       388 ~~~l  391 (394)
T TIGR00883       388 ALAL  391 (394)
T ss_pred             HHHH
Confidence            5444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.44  E-value=1e-11  Score=119.12  Aligned_cols=166  Identities=18%  Similarity=0.128  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhH--HHH------HHHHHH
Q 013655           34 AGMGWISEAMEMMLLSFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK--GFL------ITAIVT  104 (439)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~--~~~------~~~~~~  104 (439)
                      ..+..+...........+.|.+ .+++|.+..+.+++.+...++..++.++.|+++||+|||+  ...      .+.++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (399)
T TIGR00893       220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL  299 (399)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence            3334444444444555555544 5668999999999999999999999999999999999986  111      111111


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhH
Q 013655          105 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRW  183 (439)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~  183 (439)
                      ++........++.+......++.+++.+..+...+++.|..|+++|+++.|+.+....+|..++|.+.+++.+..| |+.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~  379 (399)
T TIGR00893       300 SLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAG  379 (399)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhH
Confidence            1111122222344444444455555555337777899999999999999999999999999999999999999988 999


Q ss_pred             HHHHhHHHHHHHHHHH
Q 013655          184 LLGLSAFPSSLLLLLY  199 (439)
Q Consensus       184 ~~~~~~~~~~~~~~~~  199 (439)
                      .+++.++..++..+..
T Consensus       380 ~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       380 ALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9988887777665544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.44  E-value=1.8e-11  Score=112.81  Aligned_cols=285  Identities=14%  Similarity=0.103  Sum_probs=178.9

Q ss_pred             HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc-----hhHHHH-HHHHHHHHHHHHHhh-----cc-------
Q 013655           54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG-----RRKGFL-ITAIVTSAAGLLSAF-----AP-------  115 (439)
Q Consensus        54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G-----~r~~~~-~~~~~~~~~~~~~~~-----~~-------  115 (439)
                      .+..|++++....+.+.+...+... ..+.+|+.+|+.+     ||..++ .|.++.+.+..+.++     ..       
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            3567889999999999988888765 5899999999988     776544 555555555544433     22       


Q ss_pred             hH--H--HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHH
Q 013655          116 NY--Y--LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAF  190 (439)
Q Consensus       116 ~~--~--~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~  190 (439)
                      +.  +  ...+..++.|+|.+.. .+..++++|..|+++|+++.++.....-+|.+++..+.+.+.+.+......-+...
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~  163 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG  163 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence            22  2  2345667788888887 66779999999999999999999999999999999999999888774433322222


Q ss_pred             HHH---HHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhc
Q 013655          191 PSS---LLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMA  267 (439)
Q Consensus       191 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (439)
                      ..+   ...++..+-.|++..... ...+                                         ++        
T Consensus       164 ~a~i~~~l~~ia~wg~E~r~~~~~-~~~~-----------------------------------------~~--------  193 (403)
T PF03209_consen  164 VALIALLLNLIALWGQEPRRSRRA-AAAE-----------------------------------------RP--------  193 (403)
T ss_pred             HHHHHHHHHHHHHHhcccCCcccc-cCCC-----------------------------------------CC--------
Confidence            222   222222222222110000 0000                                         00        


Q ss_pred             ccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccc
Q 013655          268 RDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST-LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNE  346 (439)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (439)
                                              +.+....++++...+.-+++ ..+++    .++.++.....+..|.-+        
T Consensus       194 ------------------------~~~f~~a~~~~~~~~~a~~f~~fl~l----~t~a~~~QD~iLEPygg~--------  237 (403)
T PF03209_consen  194 ------------------------RPPFREAWRQVWASPQARRFFVFLFL----GTLAFFMQDVILEPYGGE--------  237 (403)
T ss_pred             ------------------------CccHHHHHHHHHhCCChhHHHHHHHH----HHHHHHhhHHHcCCchhH--------
Confidence                                    00011155555543333333 23322    233333344444334322        


Q ss_pred             cccCCCCCCchhhHHHHhhhhhhHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhh---ccccchhhhHHHHHHhhhh
Q 013655          347 LQSGKSRDINYGDVFITSFAEFPGLLLAAAMVD-RLGRKLSMSSMFFCCCIFLVPLLF---QQPKGLTTGLLFGARICIT  422 (439)
Q Consensus       347 ~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~  422 (439)
                       -.|++..+...+....+.+..+|..+.|++.. |.+.++....++..+.+++.++..   ..+.+.+....+++|++.|
T Consensus       238 -Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G  316 (403)
T PF03209_consen  238 -VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNG  316 (403)
T ss_pred             -HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence             24466666777888888888999999998777 677777777888877777666553   3456677777888888876


Q ss_pred             heee
Q 013655          423 VTFT  426 (439)
Q Consensus       423 ~~~~  426 (439)
                      ....
T Consensus       317 ~f~v  320 (403)
T PF03209_consen  317 LFTV  320 (403)
T ss_pred             HHHH
Confidence            6543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09952 shikimate transporter; Provisional

Probab=99.43  E-value=1.8e-11  Score=119.35  Aligned_cols=158  Identities=15%  Similarity=0.080  Sum_probs=115.8

Q ss_pred             HHHHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh---c-chHHHHHH
Q 013655           48 LSFVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF---A-PNYYLLLF  122 (439)
Q Consensus        48 ~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~  122 (439)
                      ...+.| ++.+++|.+......+.....+...++.++.|+++||+|||+++..+.++.+++.+....   . ++.+.+++
T Consensus       269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T PRK09952        269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFF  348 (438)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            333444 455678888877666666677777888999999999999999988877665554433322   2 23444455


Q ss_pred             HHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHH-HHHHHHHHHHHHHHHHHhhccc--chhHHHHHhHHHHHHHHHH
Q 013655          123 FRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF-QTFWTVGTILEAGIAWLVMPRL--GWRWLLGLSAFPSSLLLLL  198 (439)
Q Consensus       123 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~-~~~~~~g~~i~~~l~~~l~~~~--g~~~~~~~~~~~~~~~~~~  198 (439)
                      ..++.+++.+.. +...+++.|.+|++.|+.+.|+. +.+..+|+.++|.+.+++.+..  +|+..+.+.+++.++..+.
T Consensus       349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~  428 (438)
T PRK09952        349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT  428 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            566667777766 66778899999999999999984 4555689999999999998744  4888888887777777766


Q ss_pred             HhcccCC
Q 013655          199 YSVTPES  205 (439)
Q Consensus       199 ~~~~~~~  205 (439)
                      .+.++++
T Consensus       429 ~~~~~~~  435 (438)
T PRK09952        429 ALLMKDN  435 (438)
T ss_pred             HHHcccc
Confidence            6666654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.43  E-value=6.1e-12  Score=119.33  Aligned_cols=184  Identities=18%  Similarity=0.155  Sum_probs=143.9

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcch-hHHHHH
Q 013655           23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSL--WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR-RKGFLI   99 (439)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~   99 (439)
                      .++.+|+.+++..+..+.......+..+..-.+.++  .+.+.+..|++.++..++.+++++..|+...|.+. |+.++.
T Consensus        28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~  107 (488)
T KOG2325|consen   28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV  107 (488)
T ss_pred             ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHH
Confidence            446678888888888888877776665544344444  77888899999999999999999999999999986 888999


Q ss_pred             HHHHHHHHHHHH-hh---cc-hHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013655          100 TAIVTSAAGLLS-AF---AP-NYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWL  174 (439)
Q Consensus       100 ~~~~~~~~~~~~-~~---~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~  174 (439)
                      +.++.+++.++. ++   .+ ..+.++++|++.|+|.|...+.-+++++....++|.++++....+..+|..+||.+...
T Consensus       108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA  187 (488)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence            999999998887 33   23 57889999999999999888888999998888999999999999888999999888776


Q ss_pred             hhcc--cc-----------hhHHHHHhHHHHHHHHHH-HhcccCCc
Q 013655          175 VMPR--LG-----------WRWLLGLSAFPSSLLLLL-YSVTPESP  206 (439)
Q Consensus       175 l~~~--~g-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~  206 (439)
                      +...  .|           +..+-++.+++.++.++. .+++.|..
T Consensus       188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY  233 (488)
T ss_pred             HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence            5421  11           344566666666665554 45555553

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.42  E-value=2.3e-11  Score=118.31  Aligned_cols=140  Identities=18%  Similarity=0.220  Sum_probs=105.2

Q ss_pred             HHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 013655           48 LSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLV  127 (439)
Q Consensus        48 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (439)
                      .....|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++.++..++....++.....+..++.
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            34456666677899999999999999999999999999999999999998888877666655444332211122222233


Q ss_pred             hh--ccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 013655          128 GL--GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGL  187 (439)
Q Consensus       128 G~--~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~  187 (439)
                      |+  +.... ...+.++.|.+|+++||+++|+......+|+.++|.+.+++.+..|+....++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            33  22222 44557788999999999999999999999999999999999998887654333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.42  E-value=8.7e-12  Score=120.28  Aligned_cols=137  Identities=20%  Similarity=0.235  Sum_probs=111.7

Q ss_pred             HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHhhc
Q 013655           52 GPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL-LSAFAPNYYLLLFFRCLVGLG  130 (439)
Q Consensus        52 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~  130 (439)
                      .+++.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++.++..+ .....++.+.+.+..++.|++
T Consensus       262 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (405)
T TIGR00891       262 PTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQML  341 (405)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            3455567899999999999999999999999999999999999998887766533332 333445666666666677766


Q ss_pred             cCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHh
Q 013655          131 LGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLS  188 (439)
Q Consensus       131 ~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~  188 (439)
                      .+.. +....++.|..|+++|++++|+.+....+|..++|++.+++.+..| |+..+...
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       342 VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            5555 6677888999999999999999999999999999999999999988 87766553

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.42  E-value=6.4e-12  Score=124.02  Aligned_cols=303  Identities=14%  Similarity=0.149  Sum_probs=207.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL  110 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  110 (439)
                      +.+..+..+.+++....+...+..+.+.++++.++.|++.+.+-++..+...+..+..-|..|-|.+-+|.++++++.++
T Consensus        99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll  178 (735)
T KOG3626|consen   99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLL  178 (735)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHH
Confidence            44455566667776677777788899999999999999999999999999999999999999989999999999998887


Q ss_pred             Hhhc--------------------c-----------------------------h--HH-HHHHHHHHHhhccCcc-hhh
Q 013655          111 SAFA--------------------P-----------------------------N--YY-LLLFFRCLVGLGLGGG-PVL  137 (439)
Q Consensus       111 ~~~~--------------------~-----------------------------~--~~-~~~~~~~l~G~~~g~~-~~~  137 (439)
                      +++-                    +                             +  ++ +++++.++.|+|.... +..
T Consensus       179 ~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlG  258 (735)
T KOG3626|consen  179 FALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLG  258 (735)
T ss_pred             HhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCC
Confidence            6640                    0                             0  22 4567789999999988 778


Q ss_pred             HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc------------------c-hhHHHHHhHHHHHHHHHH
Q 013655          138 ASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL------------------G-WRWLLGLSAFPSSLLLLL  198 (439)
Q Consensus       138 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~------------------g-~~~~~~~~~~~~~~~~~~  198 (439)
                      .+++-|...+++-+..+|+......+|-++|-++++++.+.+                  | |..-|++.+.+.++..+.
T Consensus       259 isYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p  338 (735)
T KOG3626|consen  259 ISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP  338 (735)
T ss_pred             CccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999998875421                  1 666778888888888888


Q ss_pred             HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhh
Q 013655          199 YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKE  278 (439)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (439)
                      ++++|++.+...++       ...++.+..+.+                         ++                    
T Consensus       339 ~f~fPk~lp~~~~~-------~~~~~~~~~k~~-------------------------~~--------------------  366 (735)
T KOG3626|consen  339 LFFFPKELPKSQKR-------KRARDLHVLKTE-------------------------SG--------------------  366 (735)
T ss_pred             HHhCcccCcccccc-------chhhhhcccccc-------------------------cc--------------------
Confidence            88888764321111       000000000000                         00                    


Q ss_pred             ccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchh
Q 013655          279 MKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYG  358 (439)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  358 (439)
                        .+++.+..+++.++-...++.+++++.+   ....+...+....+.+...+.|.|.+.         |.|.+...+..
T Consensus       367 --~~~~~~~~~~~ikdfp~s~~~ll~N~if---~~~~l~~~~~~~~~~G~~tFlPKyLE~---------Qfg~sas~An~  432 (735)
T KOG3626|consen  367 --GAKSDKTFGKKIKDFPKSIKRLLSNPIF---MLVVLASVIESLAITGYITFLPKYLET---------QFGISASLANI  432 (735)
T ss_pred             --cccCCcchhhhHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHhhHHHhhHHHHHH---------HcCCCHHHHHH
Confidence              0000001111223333466677776543   444555556666677777888888855         45566666644


Q ss_pred             hH-HHHhhhhhhHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHH
Q 013655          359 DV-FITSFAEFPGLLLAAAMVDRLG--RKLSMSSMFFCCCIFLV  399 (439)
Q Consensus       359 ~~-~~~~i~~~~g~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~  399 (439)
                      +. .+..-+..+|.+++|+++.|+.  .|.+.....+...+.++
T Consensus       433 l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~  476 (735)
T KOG3626|consen  433 LTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLL  476 (735)
T ss_pred             HhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHH
Confidence            44 3444456789999999999874  45555444444444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.41  E-value=2.8e-14  Score=140.40  Aligned_cols=171  Identities=16%  Similarity=0.161  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc
Q 013655           35 GMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA  114 (439)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~  114 (439)
                      ++..+.+.+........+..+.++|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++++++.+++++=
T Consensus         9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP   88 (539)
T PF03137_consen    9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP   88 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence            33444456666666777889999999999999999999999999999999999999888888889999999888776530


Q ss_pred             ----c----------------------------------------------hHHHHHHHHHHHhhccCcc-hhhHHHHhh
Q 013655          115 ----P----------------------------------------------NYYLLLFFRCLVGLGLGGG-PVLASWFLE  143 (439)
Q Consensus       115 ----~----------------------------------------------~~~~~~~~~~l~G~~~g~~-~~~~~~~~~  143 (439)
                          +                                              -+..++++.++.|+|.... +...+++-|
T Consensus        89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD  168 (539)
T PF03137_consen   89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD  168 (539)
T ss_dssp             ---------------------------------------------------------------SSS--------------
T ss_pred             HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence                0                                              0245678889999999988 788899999


Q ss_pred             hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------c-hhHHHHHhHHHHHHHHHHHhc
Q 013655          144 FIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL---------------------G-WRWLLGLSAFPSSLLLLLYSV  201 (439)
Q Consensus       144 ~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~---------------------g-~~~~~~~~~~~~~~~~~~~~~  201 (439)
                      ..++++-+...|+......+|.++|..+++.+...+                     | |-..|++.+++.++..+.++.
T Consensus       169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~  248 (539)
T PF03137_consen  169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF  248 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999988765321                     1 555566666666666666677


Q ss_pred             ccCC
Q 013655          202 TPES  205 (439)
Q Consensus       202 ~~~~  205 (439)
                      +|+.
T Consensus       249 FPk~  252 (539)
T PF03137_consen  249 FPKK  252 (539)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            7765

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.40  E-value=1.5e-11  Score=117.83  Aligned_cols=145  Identities=10%  Similarity=-0.037  Sum_probs=119.8

Q ss_pred             HHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhc
Q 013655           51 VGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLG  130 (439)
Q Consensus        51 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  130 (439)
                      ..|.+.++.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++..+.++++.+++..++.|++
T Consensus       227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  306 (382)
T PRK11128        227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT  306 (382)
T ss_pred             HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            33445567899999999999999999999999999999999999999999999888888888889999999999999999


Q ss_pred             cCcc-hhhHHHHhhhcCCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHH
Q 013655          131 LGGG-PVLASWFLEFIPAPNRGFWMVIFQ-TFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL  197 (439)
Q Consensus       131 ~g~~-~~~~~~~~~~~~~~~rg~~~~~~~-~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~  197 (439)
                      .+.. +....++.+. +++++++..+..+ ...++|..+||.++|.+.+.+|+ ..++..+++.+++++
T Consensus       307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            8877 5566676675 6667788899876 55678889999999999999887 456655555554433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.40  E-value=2.5e-10  Score=106.52  Aligned_cols=159  Identities=16%  Similarity=0.140  Sum_probs=129.4

Q ss_pred             HHHHHHHhhh-cCCCchhhH-HHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 013655           49 SFVGPAVQSL-WHLSPNQES-LITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL  126 (439)
Q Consensus        49 ~~~~~~~~~~-~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  126 (439)
                      +++.|++.+. .|++..++. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++.+.+-+..++
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~  103 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFF  103 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence            5566777776 889988874 35555566777788899999999999999999999999999999999999999999999


Q ss_pred             HhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHhcccC
Q 013655          127 VGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP--RLGWRWLLGLSAFPSSLLLLLYSVTPE  204 (439)
Q Consensus       127 ~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~  204 (439)
                      .|++.+.-.+.++++-...|+++--++.+....+.-+|..++..++..+..  ..+++....+......++++..+++|.
T Consensus       104 yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  104 YGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999988877777898888899998999999888888888888888887765  334666666666666667777778887


Q ss_pred             Cch
Q 013655          205 SPR  207 (439)
Q Consensus       205 ~~~  207 (439)
                      .++
T Consensus       184 ~~~  186 (412)
T PF01770_consen  184 PKR  186 (412)
T ss_pred             CCc
Confidence            643

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.40  E-value=1.7e-11  Score=120.49  Aligned_cols=150  Identities=19%  Similarity=0.189  Sum_probs=133.5

Q ss_pred             HHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655           50 FVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG  128 (439)
Q Consensus        50 ~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  128 (439)
                      ..+|.+. +++|.++...|++.+.+.+|..+|+++.+++.+|+++++.+..+.++.+++.+..+++++.+..++..++.|
T Consensus       239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G  318 (524)
T PF05977_consen  239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG  318 (524)
T ss_pred             HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3456665 568999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH
Q 013655          129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY  199 (439)
Q Consensus       129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~  199 (439)
                      ++.... ....+.+.+..|++.||++++++.+....+..+|..+.|.+.+.+|.+..+.+.++..++..++.
T Consensus       319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            988877 56668888999999999999999999999999999999999999999999888777665555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.40  E-value=4.8e-11  Score=115.98  Aligned_cols=158  Identities=21%  Similarity=0.259  Sum_probs=134.9

Q ss_pred             HHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchh--HHHHHHHHHHHHHHHHHhh--------cchH
Q 013655           48 LSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRR--KGFLITAIVTSAAGLLSAF--------APNY  117 (439)
Q Consensus        48 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~--------~~~~  117 (439)
                      ......+..+++|++..+...+..+..+..++|++++|++.||+|.|  ++++.+.+++.+..+...+        ..+.
T Consensus       301 ~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~  380 (477)
T PF11700_consen  301 ISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSP  380 (477)
T ss_pred             HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccH
Confidence            33444555678999999999999999999999999999999999999  8888888777554444444        5678


Q ss_pred             HHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHH
Q 013655          118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLL  195 (439)
Q Consensus       118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~  195 (439)
                      +.+.+.-++.|++.|.. +..-++.++..|+++.+..+|++....-..+.+||.+.+.+.+..| .|..+....++.++.
T Consensus       381 ~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~g  460 (477)
T PF11700_consen  381 WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIG  460 (477)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            88999999999999999 6666999999999999999999999999999999999999998877 888888888888888


Q ss_pred             HHHHhcccCC
Q 013655          196 LLLYSVTPES  205 (439)
Q Consensus       196 ~~~~~~~~~~  205 (439)
                      +++++.++.+
T Consensus       461 l~ll~~v~~~  470 (477)
T PF11700_consen  461 LILLFFVDVE  470 (477)
T ss_pred             HHHHhhccch
Confidence            8777776554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.39  E-value=2.8e-11  Score=118.55  Aligned_cols=157  Identities=17%  Similarity=0.113  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc--chhHHH-HHHHHHHHHHHHHHhh--cchH
Q 013655           44 EMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF--GRRKGF-LITAIVTSAAGLLSAF--APNY  117 (439)
Q Consensus        44 ~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~-~~~~~~~~~~~~~~~~--~~~~  117 (439)
                      .......+.|.+. ++.|++..+.+++..++.++..++.+++|+++||+  |||+.. +....+..++.++..+  ..+.
T Consensus       268 ~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~  347 (452)
T PRK11273        268 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNP  347 (452)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccCh
Confidence            3334445556555 45799999999999999999999999999999999  555432 2222333333332222  2344


Q ss_pred             HHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHH-HHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655          118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTI-LEAGIAWLVMPRLGWRWLLGLSAFPSSLL  195 (439)
Q Consensus       118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-i~~~l~~~l~~~~g~~~~~~~~~~~~~~~  195 (439)
                      +...+..++.|.+.... .....+..|.+|+++||+++|+.+....+|+. ++|.+.+++.+..||+..|++.++.++++
T Consensus       348 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~  427 (452)
T PRK11273        348 TVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA  427 (452)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHH
Confidence            44445555555543332 33335567999999999999999988888765 47999999999999999999888777776


Q ss_pred             HHHHh
Q 013655          196 LLLYS  200 (439)
Q Consensus       196 ~~~~~  200 (439)
                      ++...
T Consensus       428 ~~~~~  432 (452)
T PRK11273        428 VILLI  432 (452)
T ss_pred             HHHHH
Confidence            55543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.39  E-value=1.5e-11  Score=116.80  Aligned_cols=131  Identities=21%  Similarity=0.171  Sum_probs=115.7

Q ss_pred             HHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHH
Q 013655           50 FVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN-YYLLLFFRCLV  127 (439)
Q Consensus        50 ~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  127 (439)
                      ...|.+.++ +|.+..+.+++.....++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.+.+..++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            455666654 8999999999999999999999999999999999999998888888888777777764 88888889999


Q ss_pred             hhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655          128 GLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG  180 (439)
Q Consensus       128 G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g  180 (439)
                      |++.+.. +...+++.|..|+++|+++.|+.+....+|..++|.+++++.+.+|
T Consensus       312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9998888 6677889999999999999999999999999999999999987654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.38  E-value=2.7e-11  Score=112.38  Aligned_cols=162  Identities=19%  Similarity=0.208  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc-chH
Q 013655           39 ISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA-PNY  117 (439)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~  117 (439)
                      +........++|+-|.+.+..|+|.+..+++..++.++..+|.+++|+++|| +.|+.+.....+.++..+.+.+. ++.
T Consensus       222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~  300 (394)
T COG2814         222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP  300 (394)
T ss_pred             HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH
Confidence            3333444566788899999999999999999999999999999999999999 99999888877777777766655 456


Q ss_pred             HHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHH
Q 013655          118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL  196 (439)
Q Consensus       118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~  196 (439)
                      +..++..++.|+..+.. .......++ .-++.++.+.+++....++|..+|..++|.+.+++|+....++.++..+++.
T Consensus       301 ~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~  379 (394)
T COG2814         301 ALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLAL  379 (394)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            66666777777776666 344455566 5568899999999999999999999999999999999999999999888877


Q ss_pred             HHHhcc
Q 013655          197 LLYSVT  202 (439)
Q Consensus       197 ~~~~~~  202 (439)
                      ++.+..
T Consensus       380 ~~~~~~  385 (394)
T COG2814         380 LLALLS  385 (394)
T ss_pred             HHHHHH
Confidence            765543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.38  E-value=5.2e-11  Score=117.74  Aligned_cols=161  Identities=16%  Similarity=0.103  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc--ch-H-HHH
Q 013655           45 MMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA--PN-Y-YLL  120 (439)
Q Consensus        45 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~-~-~~~  120 (439)
                      .....++.|.+.++.|.+....++......+...++.++.|+++||+|||+.++.+.++.+++.+++...  .+ . ...
T Consensus       287 ~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             hhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            3344566788888899988888888888888999999999999999999999999999888887766532  11 1 122


Q ss_pred             HHHHHHHhhccCc--chhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH------hhcccchhHHHHHhHHHH
Q 013655          121 LFFRCLVGLGLGG--GPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWL------VMPRLGWRWLLGLSAFPS  192 (439)
Q Consensus       121 ~~~~~l~G~~~g~--~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~------l~~~~g~~~~~~~~~~~~  192 (439)
                      ..+.++.+++.+.  .+....++.|.+|+++|++++|+......+|..+++.+.+.      +.+.++|+..|++.++..
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  446 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence            2233334443333  25667889999999999999999999999988888665554      345788888888877766


Q ss_pred             HHHHHH-HhcccCC
Q 013655          193 SLLLLL-YSVTPES  205 (439)
Q Consensus       193 ~~~~~~-~~~~~~~  205 (439)
                      +++.++ +++.||+
T Consensus       447 ~~~~~~~~~~~~e~  460 (479)
T PRK10077        447 VLAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHHhccccC
Confidence            666554 3455665

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.38  E-value=2.6e-11  Score=120.37  Aligned_cols=170  Identities=16%  Similarity=0.103  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHH------------HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655           37 GWISEAMEMMLLSFVGPAVQSLWHLSPNQESL------------ITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT  104 (439)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  104 (439)
                      .++...+..+....+.|.+.++.|.+....+.            ...+..++..++.++.++++||+|||+.++.+..+.
T Consensus       296 ~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~  375 (502)
T TIGR00887       296 SWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFIL  375 (502)
T ss_pred             HHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Confidence            33333333344444567777788876543211            233445566678889999999999999998888777


Q ss_pred             HHHHHHHhhcc----hHHHHHHHHHHHhh-ccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 013655          105 SAAGLLSAFAP----NYYLLLFFRCLVGL-GLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-  178 (439)
Q Consensus       105 ~~~~~~~~~~~----~~~~~~~~~~l~G~-~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-  178 (439)
                      +++..+..+..    +...+....+...+ +.+..+..+.+..|.+|++.|+++.|+.+....+|.+++|.+.+++.+. 
T Consensus       376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  455 (502)
T TIGR00887       376 TVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG  455 (502)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence            77665554421    11111111112222 2233355667789999999999999999999999999999999998873 


Q ss_pred             ---------cchhHHHHHhHHHHHHHHHHHhcccCCc
Q 013655          179 ---------LGWRWLLGLSAFPSSLLLLLYSVTPESP  206 (439)
Q Consensus       179 ---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (439)
                               .++...|++.+++.++..+..+++||++
T Consensus       456 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       456 DPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence                     3456677777777776666667778873

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10504 putative transporter; Provisional

Probab=99.37  E-value=3e-11  Score=119.09  Aligned_cols=144  Identities=19%  Similarity=0.205  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHHhh-hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc---
Q 013655           39 ISEAMEMMLLSFVGPAVQS-LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA---  114 (439)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---  114 (439)
                      ++..........+.|++.+ .+|.++.+.+++.....++..++.++.|++.||+|+|+++..+.++.+++..+..+.   
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  350 (471)
T PRK10504        271 FAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALL  350 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcccc
Confidence            3333444455556676665 589999999999999999999999999999999999999998888777776665543   


Q ss_pred             chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 013655          115 PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR  182 (439)
Q Consensus       115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~  182 (439)
                      ++.+.+.+..++.|++.+.. +.......+..|++.+|.++++.+....+|..+|+.+.+.+.+..|+.
T Consensus       351 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~  419 (471)
T PRK10504        351 GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ  419 (471)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            33444455567778877776 666678888999999999999999999999999999999988766653

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.36  E-value=5.9e-11  Score=117.14  Aligned_cols=155  Identities=15%  Similarity=0.171  Sum_probs=118.9

Q ss_pred             HHHHHHhhhcCCCchhhHHHHH-HHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH---Hhhc-chHHHHHHHH
Q 013655           50 FVGPAVQSLWHLSPNQESLITS-VVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL---SAFA-PNYYLLLFFR  124 (439)
Q Consensus        50 ~~~~~~~~~~~~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~  124 (439)
                      ...|++.+++|+|..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.+.   .+.. ++.+.+.+..
T Consensus       244 ~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~  323 (491)
T PRK11010        244 LTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV  323 (491)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            3445566779999999999974 666899999999999999999998877666554544332   2233 3454444455


Q ss_pred             HHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhccc
Q 013655          125 CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTP  203 (439)
Q Consensus       125 ~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  203 (439)
                      ++..++.|.. ....+...+..+++.+++..++.+...++|..+++++.|++.+..||+..|.+.+++++.+++....++
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555544544 455677888999999999999999999999999999999999999999999998888888777665554


Q ss_pred             C
Q 013655          204 E  204 (439)
Q Consensus       204 ~  204 (439)
                      +
T Consensus       404 ~  404 (491)
T PRK11010        404 Q  404 (491)
T ss_pred             h
Confidence            4

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.35  E-value=1e-10  Score=114.13  Aligned_cols=134  Identities=18%  Similarity=0.211  Sum_probs=106.6

Q ss_pred             HHHHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc-chHHHHHHHH
Q 013655           47 LLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA-PNYYLLLFFR  124 (439)
Q Consensus        47 ~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  124 (439)
                      ......+++.+. ++ +....+++.++..++..++.+++++++||+|+|+++..+..+.+++.++..+. ++.+.+++..
T Consensus       240 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (437)
T TIGR00792       240 IKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLI  318 (437)
T ss_pred             HHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHH
Confidence            333344444443 34 56677888888899999999999999999999999999988888887776665 3566777777


Q ss_pred             HHHhhccCcc-hhhHHHHhhhcC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655          125 CLVGLGLGGG-PVLASWFLEFIP-------APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW  181 (439)
Q Consensus       125 ~l~G~~~g~~-~~~~~~~~~~~~-------~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~  181 (439)
                      ++.|++.+.. +...++++|..+       ++++|.+.|+.+....+|..+++.+.+++.+..||
T Consensus       319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       319 ILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8888988877 666677777754       56689999999999999999999999999887766

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.35  E-value=4.7e-11  Score=116.35  Aligned_cols=164  Identities=15%  Similarity=0.103  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc--chhHHH-HH---HHHHHHHHH
Q 013655           36 MGWISEAMEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF--GRRKGF-LI---TAIVTSAAG  108 (439)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~-~~---~~~~~~~~~  108 (439)
                      +..+...........+.|.+. +++|++..+.+...+.+.++..++.++.|+++||+  ++|+.. ..   +..+..++.
T Consensus       250 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~  329 (434)
T PRK11663        250 FSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSL  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHH
Confidence            333333333444444555555 67899999999999999999999999999999998  333222 22   112121121


Q ss_pred             HHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 013655          109 LLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGL  187 (439)
Q Consensus       109 ~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~  187 (439)
                      .... ..+.....+..+..|++.... ........|.+|+++||+++|+.+....+|..++|.+.+++.+..||+..|++
T Consensus       330 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~  408 (434)
T PRK11663        330 WLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVV  408 (434)
T ss_pred             HHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHH
Confidence            2222 223333334444455433222 23345567999999999999999999999999999999999999999999998


Q ss_pred             hHHHHHHHHHHHh
Q 013655          188 SAFPSSLLLLLYS  200 (439)
Q Consensus       188 ~~~~~~~~~~~~~  200 (439)
                      .+++.++..+..+
T Consensus       409 ~~~~~~~~~~~~~  421 (434)
T PRK11663        409 ISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777655443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.34  E-value=6.9e-11  Score=113.58  Aligned_cols=148  Identities=16%  Similarity=0.091  Sum_probs=110.8

Q ss_pred             HHHHHhhhcCCCchhhHHHHHHHHH-HHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh------cchHHHHHHH
Q 013655           51 VGPAVQSLWHLSPNQESLITSVVFA-GMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF------APNYYLLLFF  123 (439)
Q Consensus        51 ~~~~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  123 (439)
                      +.+.+.++.|+++++.|++.....+ ...++.++.|++.||+|+|+.+..+..+.++..+....      .++...+...
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            3444556689999999999888764 66677899999999999999988777665333222211      2233344444


Q ss_pred             HHHHhhccCcc-hhhHHHHhhhcCC-CchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 013655          124 RCLVGLGLGGG-PVLASWFLEFIPA-PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL  198 (439)
Q Consensus       124 ~~l~G~~~g~~-~~~~~~~~~~~~~-~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~  198 (439)
                      ..+.+++.+.. +...+...+..++ +++|+.+++.+...++|..++|.++|++.+..||+..|...+++.+++.+.
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            55556666666 5556666666665 889999999999999999999999999999999999998888776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.34  E-value=1.9e-11  Score=112.16  Aligned_cols=172  Identities=20%  Similarity=0.199  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc--chhHHH-HHHHHHH
Q 013655           29 CVLAYAGMGWISEAMEMMLLSFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF--GRRKGF-LITAIVT  104 (439)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~-~~~~~~~  104 (439)
                      ..+++++++.++....++.+.-+.|.+ .|..|+|..++++..+.+-++...|.+++|+++||+  |||..+ ++.+++.
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            356778888888888888888877754 577899999999999999999999999999999996  666554 4455555


Q ss_pred             HHHHHHHhhcc--hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHH-HHHHHHHHHHHhhcccc
Q 013655          105 SAAGLLSAFAP--NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTV-GTILEAGIAWLVMPRLG  180 (439)
Q Consensus       105 ~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~i~~~l~~~l~~~~g  180 (439)
                      .++.+..-+++  |+++..++.++.|+..-+. ........|..|++.-|++.|+.+.+..+ |...+....+++.|.+|
T Consensus       332 ~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g  411 (448)
T COG2271         332 TASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG  411 (448)
T ss_pred             HHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence            55555655665  4588888889999886665 55556778999999999999999999999 88899999999999999


Q ss_pred             hhHHHHHhHHHHHHHHHHHh
Q 013655          181 WRWLLGLSAFPSSLLLLLYS  200 (439)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~  200 (439)
                      |...|.+..+.++++.+++.
T Consensus       412 W~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         412 WDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             CcchHHHHHHHHHHHHHHHH
Confidence            99999888877777655543

>TIGR00895 2A0115 benzoate transport

Probab=99.34  E-value=5.6e-11  Score=114.26  Aligned_cols=139  Identities=18%  Similarity=0.170  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch
Q 013655           37 GWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN  116 (439)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~  116 (439)
                      ..+...........+.|++.+++|.+..+.++..+...++..++.++.|+++||+|||+.+....+....+.++....++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (398)
T TIGR00895       258 LYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFS  337 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence            33344444455566677888899999999999999999999999999999999999995544444333333333333567


Q ss_pred             HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013655          117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLV  175 (439)
Q Consensus       117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l  175 (439)
                      .+..++..++.|++.+.. +...+++.|.+|+++||++.|+......+|..++|.++|++
T Consensus       338 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       338 PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            777788888999998887 77778999999999999999999999999999999999875

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.34  E-value=8.3e-11  Score=113.28  Aligned_cols=139  Identities=12%  Similarity=0.070  Sum_probs=118.4

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhH
Q 013655           60 HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLA  138 (439)
Q Consensus        60 ~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~  138 (439)
                      +.+....|.+.++..+...++.++.|++.||+|+|+.+.++.++.++...+....++.+.+++.+++.|++.... ....
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677899999999999999999999999999999999999888888888778888888888899999887655 4445


Q ss_pred             HHHhhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 013655          139 SWFLEFIPAPNRGFWMVI-FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL  198 (439)
Q Consensus       139 ~~~~~~~~~~~rg~~~~~-~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~  198 (439)
                      .+..+..+++.++...+. .+....+|..+++.++|++.+..||+.+|.+.+++.++..+.
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            667777888888887766 678899999999999999999999999999988887766554

>PRK15075 citrate-proton symporter; Provisional

Probab=99.34  E-value=1.2e-10  Score=113.48  Aligned_cols=142  Identities=17%  Similarity=0.169  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHhh-hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH-HH---hhcc
Q 013655           41 EAMEMMLLSFVGPAVQS-LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL-LS---AFAP  115 (439)
Q Consensus        41 ~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~-~~---~~~~  115 (439)
                      ..........+.|.+.+ .+|.+..+.++......++..++.+++|+++||+|||++++.+.++.++... ..   ...+
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  329 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            34444455555666554 5899999999999999999999999999999999999988776554432221 11   1223


Q ss_pred             hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhcccchh
Q 013655          116 NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQ-TFWTVGTILEAGIAWLVMPRLGWR  182 (439)
Q Consensus       116 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~-~~~~~g~~i~~~l~~~l~~~~g~~  182 (439)
                      ++....+..++.|++.+.. +....++.|.+|++.|+.+.++.. .+..+++.++|.+.+++.+..|++
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            4444444455556666655 455578899999999999999954 444556788999999999988864

>TIGR01272 gluP glucose/galactose transporter

Probab=99.33  E-value=1.1e-10  Score=107.99  Aligned_cols=156  Identities=15%  Similarity=0.107  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh---hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013655           33 YAGMGWISEAMEMMLLSFVGPAVQS---LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL  109 (439)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  109 (439)
                      +..+..++..........+.+.+.+   .+|+++.+.++..+.+..+..++.++.+++.||+|+||.+.++..+.+++.+
T Consensus       144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~  223 (310)
T TIGR01272       144 LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI  223 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3444444444334344444454443   3699999999999999999999999999999999999998888887777776


Q ss_pred             HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655          110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS  188 (439)
Q Consensus       110 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~  188 (439)
                      +....++.... ...++.|++.+.. |...+...+..|++ .+.+.++. ....+|+.+.|++.|.+.|..|.+..+++.
T Consensus       224 l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~  300 (310)
T TIGR01272       224 GAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP  300 (310)
T ss_pred             HHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence            66555544333 3555788888887 77777777777653 45666775 566789999999999999999988888754


Q ss_pred             HHH
Q 013655          189 AFP  191 (439)
Q Consensus       189 ~~~  191 (439)
                      .++
T Consensus       301 ~~~  303 (310)
T TIGR01272       301 VPC  303 (310)
T ss_pred             HHH
Confidence            443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.32  E-value=1.3e-10  Score=113.14  Aligned_cols=157  Identities=12%  Similarity=-0.008  Sum_probs=100.7

Q ss_pred             HHHHHHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh----hcchHHHH
Q 013655           46 MLLSFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA----FAPNYYLL  120 (439)
Q Consensus        46 ~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~----~~~~~~~~  120 (439)
                      +....+.|.+ .+++|.+..+.+...++..++..+++++.|+++||+|||+.+..+.++.++......    ..++....
T Consensus       260 ~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (432)
T PRK10406        260 YTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA  339 (432)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            3344455554 566899999999999988888899999999999999999988776554433332111    12233322


Q ss_pred             HHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHH-HHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHH
Q 013655          121 LFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTV-GTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLLL  197 (439)
Q Consensus       121 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~  197 (439)
                      +....+.+++.+.. .....+..|.+|++.|++++|+.+...++ ++...|.+.+++ +..| |...+++.++..++..+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~  418 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFL  418 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHH
Confidence            22222222333333 44557789999999999999997765443 344577777755 4445 55566666666666555


Q ss_pred             HHhccc
Q 013655          198 LYSVTP  203 (439)
Q Consensus       198 ~~~~~~  203 (439)
                      ..++++
T Consensus       419 ~~~~l~  424 (432)
T PRK10406        419 VSLMLH  424 (432)
T ss_pred             HHHHhh
Confidence            544443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.31  E-value=2.5e-10  Score=110.38  Aligned_cols=145  Identities=17%  Similarity=0.098  Sum_probs=111.6

Q ss_pred             HHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc-----chHHHHHHH
Q 013655           50 FVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA-----PNYYLLLFF  123 (439)
Q Consensus        50 ~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  123 (439)
                      ...|.+ .+++|.++.+.++......++..++.++.|+++||+|+|+.+..+.++.+++.++..+.     .+++.+.+.
T Consensus       236 ~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  315 (406)
T PRK15402        236 ALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG  315 (406)
T ss_pred             HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence            334444 56789999999998888888999999999999999999999988888777776665542     345666777


Q ss_pred             HHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655          124 RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL  195 (439)
Q Consensus       124 ~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~  195 (439)
                      .++.|++.+.. +....... ..++++||+..+..+....+|..+|+.+.+.+.+..++....+..++..++.
T Consensus       316 ~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        316 LSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            88888888776 44444333 3345899999999999999999999999999988878766555544444444

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.31  E-value=2.1e-11  Score=119.22  Aligned_cols=175  Identities=17%  Similarity=0.224  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc--hhHHHHHHHHHHHH
Q 013655           29 CVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG--RRKGFLITAIVTSA  106 (439)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G--~r~~~~~~~~~~~~  106 (439)
                      ..++...+...+...+......++|.+.++.+.+..+.+.+.++..+...++.+..|+++|+..  ++.+..++.++.++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            3456666777777888888888999999999999999999999999999999999999999987  45556778888888


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhccCcch-hhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHH
Q 013655          107 AGLLSAFAPNYYLLLFFRCLVGLGLGGGP-VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWL  184 (439)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~  184 (439)
                      +.+..++.++++.+....++.|++.|... .....+.|..+.++-..+.|+...+.+++.++||++++++.|..| |...
T Consensus       378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~  457 (509)
T KOG2504|consen  378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHA  457 (509)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeee
Confidence            88899999999999999999999999984 444678999999999999999999999999999999999999887 9999


Q ss_pred             HHHhHHHHHHHHHHHhccc
Q 013655          185 LGLSAFPSSLLLLLYSVTP  203 (439)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~  203 (439)
                      |+..++..+++.+.++..+
T Consensus       458 f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  458 FYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hhhcChHHHHHHHHHHHhH
Confidence            9999999998887777665

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.30  E-value=2.7e-10  Score=109.08  Aligned_cols=181  Identities=15%  Similarity=0.184  Sum_probs=137.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655           25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT  104 (439)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  104 (439)
                      ..|+.....+.+....+..+.....++...+.++.|++..++.++.....+...+..+++.++.||+|||+.++.+..++
T Consensus       266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~  345 (485)
T KOG0569|consen  266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLM  345 (485)
T ss_pred             chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            34455455555555556666677777888889999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhcc----hH--HH---HHHHHH--HHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013655          105 SAAGLLSAFAP----NY--YL---LLFFRC--LVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW  173 (439)
Q Consensus       105 ~~~~~~~~~~~----~~--~~---~~~~~~--l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~  173 (439)
                      .+..+++....    ..  |.   .+++.+  ...++.|..|..+-+.+|.+|++.|..++++......+..++-...-.
T Consensus       346 ~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp  425 (485)
T KOG0569|consen  346 AVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP  425 (485)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877665431    11  11   223333  344455555777788999999999999999999999988888877777


Q ss_pred             HhhcccchhHHHHHhHHHHHHH-HHHHhcccCCc
Q 013655          174 LVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESP  206 (439)
Q Consensus       174 ~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~  206 (439)
                      .+.+..|- ..|+...+++++. +.++..+||++
T Consensus       426 ~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  426 PLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            77777776 5566666555554 45578889983

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.29  E-value=6.5e-11  Score=116.57  Aligned_cols=149  Identities=12%  Similarity=-0.035  Sum_probs=104.5

Q ss_pred             HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchh-------HHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 013655           53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRR-------KGFLITAIVTSAAGLLSAFAPNYYLLLFFRC  125 (439)
Q Consensus        53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (439)
                      +++.+++|++..+.+.+.++..++..++.+++|+++||+|||       ....+..++.++..++....++.+...+..+
T Consensus       277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~  356 (476)
T PLN00028        277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMI  356 (476)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            445677899999999999999999999999999999999875       2233333334444444555556655555555


Q ss_pred             HHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhccc
Q 013655          126 LVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTP  203 (439)
Q Consensus       126 l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  203 (439)
                      +.+++.+.. ....+++.+. .++++|...|+.+.+..+|..+++.+.+ ..+..+|+..|++.+++.+++.++.++++
T Consensus       357 l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        357 LFSIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            666654443 3344444554 4578999999998888888877776654 22345699999999888888777666654

>PRK10054 putative transporter; Provisional

Probab=99.29  E-value=1.4e-10  Score=111.51  Aligned_cols=143  Identities=12%  Similarity=-0.003  Sum_probs=116.6

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHhhccCcc-
Q 013655           57 SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA-PNYYLLLFFRCLVGLGLGGG-  134 (439)
Q Consensus        57 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~-  134 (439)
                      ++.+.+....+++.....+.....+++.|++.||+++|+.+..+..+.+++..+..+. ++.+.+++..++.|+|.+.. 
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            4556777778888888888888888999999999999999998888888887777664 56777777888999998776 


Q ss_pred             hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHh
Q 013655          135 PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYS  200 (439)
Q Consensus       135 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  200 (439)
                      +.....+.+..|++.|+++.+..+ ...+|..+||.+++++.|+.|....|++.++...+..+..+
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            666678889999999999998765 56689999999999999999998888887666655554433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.28  E-value=4.1e-10  Score=108.66  Aligned_cols=147  Identities=13%  Similarity=0.163  Sum_probs=103.4

Q ss_pred             HHHHhhhcCCCchhhHHHHHHHH-HHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH---hhc-chHHHHHHHHHH
Q 013655           52 GPAVQSLWHLSPNQESLITSVVF-AGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS---AFA-PNYYLLLFFRCL  126 (439)
Q Consensus        52 ~~~~~~~~~~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l  126 (439)
                      .+.+.+++|+++.+.+++.+... ++..++.+++|++.||+|+|+.+..+..+.++..+..   ++. ++.+.+.+..++
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  312 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            35567779999999999986654 5688999999999999999998877666655544332   343 455655555544


Q ss_pred             ----HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655          127 ----VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV  201 (439)
Q Consensus       127 ----~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  201 (439)
                          .|++.+.. .....++.+..|.    +..++.+...++|..+++++++.+.+.+||+..|.+.++++++..++...
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSA----TQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence                34444444 3334455555554    44566666667888777789999999999999999988888777666544


Q ss_pred             c
Q 013655          202 T  202 (439)
Q Consensus       202 ~  202 (439)
                      .
T Consensus       389 ~  389 (402)
T PRK11902        389 M  389 (402)
T ss_pred             H
Confidence            4

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.28  E-value=2.3e-10  Score=107.40  Aligned_cols=149  Identities=12%  Similarity=0.087  Sum_probs=126.6

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-h
Q 013655           57 SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-P  135 (439)
Q Consensus        57 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~  135 (439)
                      ++-+.+....|.+.+...+.-++...+..++.+|+|.|+.++++..++++=..+++++++.+.+.+.+.+.|+-.+.. .
T Consensus       252 ~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lv  331 (412)
T PF01306_consen  252 QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLV  331 (412)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            333456677899999999999999999999999999999999999999999999999999999999999999999988 7


Q ss_pred             hhHHHHhhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH-HhcccCC
Q 013655          136 VLASWFLEFIPAPNRGFWMVI-FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTPES  205 (439)
Q Consensus       136 ~~~~~~~~~~~~~~rg~~~~~-~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~  205 (439)
                      ....++++.+|++..++...+ .+.+.++|..+.+.++|.+.|+.|.+..|++.+.+.+...++ .+.++++
T Consensus       332 a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  332 AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            777999999999988888888 578899999999999999999999999999888877766555 4555544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.27  E-value=9.7e-11  Score=107.70  Aligned_cols=160  Identities=18%  Similarity=0.118  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc-
Q 013655           38 WISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP-  115 (439)
Q Consensus        38 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-  115 (439)
                      ++..+-.....+..+| ++.++++.++.+.|.+...+.+...+..+.+|+++||+|.+|++......++++..+..+.+ 
T Consensus       227 Y~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~  306 (417)
T COG2223         227 YFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT  306 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc
Confidence            3333333334444444 56688999999999999999999999999999999999999999998888888887776653 


Q ss_pred             ------hHHHH----HHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHH
Q 013655          116 ------NYYLL----LFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWL  184 (439)
Q Consensus       116 ------~~~~~----~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~  184 (439)
                            +....    +...++.|+|.|.   ...++..++|+ +-|.+.|+.....++|+..-|...+...+..| ++..
T Consensus       307 ~~~~~~~~~~~~~~~l~l~~~~G~GnGs---vfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~  382 (417)
T COG2223         307 GFGHGGSFVVFVAVFLALFVFAGLGNGS---VFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGA  382 (417)
T ss_pred             ccccCcchHHHHHHHHHHHHHhccCcch---heeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHH
Confidence                  33333    3444555555554   44555555554 77899999999999999999999999888887 8889


Q ss_pred             HHHhHHHHHHHHHHHhc
Q 013655          185 LGLSAFPSSLLLLLYSV  201 (439)
Q Consensus       185 ~~~~~~~~~~~~~~~~~  201 (439)
                      |++.....+++.+....
T Consensus       383 f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         383 FMLLLAFYLVALVLTWA  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99888888877765443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.27  E-value=7.7e-10  Score=106.32  Aligned_cols=147  Identities=12%  Similarity=0.042  Sum_probs=114.5

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG  128 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  128 (439)
                      .+..|.+.+++|++..+.+++.....++..++.++.|++.||.+++..+....+..+...++....++.+.+.+..++.|
T Consensus       237 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G  316 (394)
T PRK10213        237 TYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            34457777889999999999999999999999999999999965444344333334444445455667778888888999


Q ss_pred             hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHH
Q 013655          129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL  196 (439)
Q Consensus       129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~  196 (439)
                      ++.+.. +...+++.+..| +++++..++.....++|..+|+.++|++.+..|++..+...++..++..
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence            998887 556677888776 5577888888888899999999999999999999988888776554443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.26  E-value=2.5e-10  Score=100.32  Aligned_cols=176  Identities=18%  Similarity=0.115  Sum_probs=128.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHH
Q 013655           27 QLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA  106 (439)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  106 (439)
                      ||..+....+.....+ ..+..+.+.|.+.+.+|+|.++...+.....+|..+ +++.|.+.|++|++.++.+|.+...+
T Consensus         1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3555544444444444 445667888999999999999999999999999987 48899999999999999999999999


Q ss_pred             HHHHHhhc-------chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013655          107 AGLLSAFA-------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR  178 (439)
Q Consensus       107 ~~~~~~~~-------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~  178 (439)
                      +..+...+       +++|.+.+..++.|.+.+.. ........+.+| ++||.+.|+.-...++++.+-..+...+.+.
T Consensus        79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            88776543       35777877777777776655 444455567887 5799999999999999988877777666554


Q ss_pred             cchhHHHHHhHHHHHHHHHHHhcccCC
Q 013655          179 LGWRWLLGLSAFPSSLLLLLYSVTPES  205 (439)
Q Consensus       179 ~g~~~~~~~~~~~~~~~~~~~~~~~~~  205 (439)
                      -.-...++....+.++.++...+++..
T Consensus       158 ~~~~fll~la~~~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  158 DPSSFLLFLAVLPAVVCLVAMFFVRPV  184 (250)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence            223333333334444444444555433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.24  E-value=2.1e-10  Score=110.97  Aligned_cols=161  Identities=13%  Similarity=0.117  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHH-HHHHHHHHHHHH
Q 013655           32 AYAGMGWISEAMEMMLLSFVGPAVQSLW--HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKG-FLITAIVTSAAG  108 (439)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~-~~~~~~~~~~~~  108 (439)
                      +...+.+++..........+.|.+.+++  +.+..+.+.+.....++..++.+++|+++||+++|+. +....++.+++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~  324 (412)
T TIGR02332       245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW  324 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH
Confidence            3344445555555556667778777764  6688889999999999999999999999999997774 444444444443


Q ss_pred             HHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHH
Q 013655          109 LLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLG  186 (439)
Q Consensus       109 ~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~  186 (439)
                      .+....++....+++.++.+++.... +.......|.+|+++|++++|+.+....+|..++|.+.+.+.+..| |+..+.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~  404 (412)
T TIGR02332       325 LLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLW  404 (412)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHH
Confidence            33222333222222222333333222 2233444677899999999999999999999999999999999875 999887


Q ss_pred             HhHHHH
Q 013655          187 LSAFPS  192 (439)
Q Consensus       187 ~~~~~~  192 (439)
                      +.++..
T Consensus       405 ~~~~~~  410 (412)
T TIGR02332       405 FVAALL  410 (412)
T ss_pred             HHHHHH
Confidence            766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.24  E-value=1.1e-09  Score=104.92  Aligned_cols=148  Identities=18%  Similarity=0.124  Sum_probs=109.7

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHH
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF-APNYYLLLFFRCLV  127 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~  127 (439)
                      .+..|++.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..++.
T Consensus       220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  299 (382)
T PRK10091        220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFIC  299 (382)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34456666778999999999999999999999999999999999999998888887777655543 45555566666666


Q ss_pred             hhccCcc-hhhHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHhHHHHHHHHHH
Q 013655          128 GLGLGGG-PVLAS-WFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-LGWRWLLGLSAFPSSLLLLL  198 (439)
Q Consensus       128 G~~~g~~-~~~~~-~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-~g~~~~~~~~~~~~~~~~~~  198 (439)
                      +++.... ++... ...+..+++.++..  ..+....+|..+||.+++++.+. .+|+..+.+.++.+++....
T Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (382)
T PRK10091        300 CAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS  371 (382)
T ss_pred             HHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence            6665444 33333 33444444445544  34667889999999999999985 68999998887766665444

>TIGR00898 2A0119 cation transport protein

Probab=99.24  E-value=2.5e-10  Score=113.68  Aligned_cols=148  Identities=18%  Similarity=0.102  Sum_probs=113.5

Q ss_pred             HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHhhcc
Q 013655           54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNY--YLLLFFRCLVGLGL  131 (439)
Q Consensus        54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~  131 (439)
                      ...+.++.+..   +...+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+..++.+++.
T Consensus       348 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  424 (505)
T TIGR00898       348 LDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGI  424 (505)
T ss_pred             ccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            33445555533   33345566777888999999999999999999999888888877776543  44555556666666


Q ss_pred             Ccc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCCc
Q 013655          132 GGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESP  206 (439)
Q Consensus       132 g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (439)
                      +.. +....+..|.+|++.|+.++|+.+....+|.+++|.+.+ + +..++..++.+.++..+++.++.+++||+.
T Consensus       425 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       425 TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            555 666788899999999999999999999999999999988 3 345677788888887777777777888763

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.24  E-value=3.2e-10  Score=104.42  Aligned_cols=153  Identities=19%  Similarity=0.179  Sum_probs=131.6

Q ss_pred             HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccC
Q 013655           53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLG  132 (439)
Q Consensus        53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g  132 (439)
                      .+-..++|++..+..++.....+..+++++++|++.||+|.|+++..+.++..+..+...+......+.++-++.|+..|
T Consensus       277 ~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G  356 (438)
T COG2270         277 VFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLG  356 (438)
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Confidence            34455899999999999999999999999999999999999999999999888887777776666677777889999999


Q ss_pred             cc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHHHHhcccCC
Q 013655          133 GG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLLLLYSVTPES  205 (439)
Q Consensus       133 ~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  205 (439)
                      .. ...-++..+..|+++-++.+|+++.....++.+||.+.+.+.+..| -|..+....++.++.+++++.+|++
T Consensus       357 ~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         357 GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            99 6666999999999999999999999999999999999999887655 6667777777777777777776654

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.23  E-value=2.3e-10  Score=110.08  Aligned_cols=166  Identities=19%  Similarity=0.227  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCch-hhHHHHHH----HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655           36 MGWISEAMEMMLLSFVGPAVQSLWHLSPN-QESLITSV----VFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL  110 (439)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~g~~~~~----~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  110 (439)
                      +-.+..++.........++..+..+.+.. ..+.....    ..+...+.++..|.++||+|||..+....+...+..+.
T Consensus        29 l~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~  108 (463)
T KOG2816|consen   29 LYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALC  108 (463)
T ss_pred             HHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHH
Confidence            33344444443334444455544443322 22333333    36788889999999999999999999998888877777


Q ss_pred             HhhcchHHHHHHHHHHHhhccCcc---hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 013655          111 SAFAPNYYLLLFFRCLVGLGLGGG---PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGL  187 (439)
Q Consensus       111 ~~~~~~~~~~~~~~~l~G~~~g~~---~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~  187 (439)
                      ..+.. +|.++    +.|+..+..   ....+++++....++|....|+.+.....+..++|.+++.+.+..|.-.+|.+
T Consensus       109 ~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~i  183 (463)
T KOG2816|consen  109 LLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLI  183 (463)
T ss_pred             HHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHH
Confidence            66655 43333    444443332   55668899999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHH-HhcccCCc
Q 013655          188 SAFPSSLLLLL-YSVTPESP  206 (439)
Q Consensus       188 ~~~~~~~~~~~-~~~~~~~~  206 (439)
                      ..+..++..+. .+++||+.
T Consensus       184 a~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  184 AAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             HHHHHHHHHHHHhhcccccc
Confidence            88888877665 56677764

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.22  E-value=3.5e-10  Score=110.37  Aligned_cols=159  Identities=16%  Similarity=0.096  Sum_probs=107.0

Q ss_pred             HHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH---HHHHHHHhh--cchHHHH
Q 013655           47 LLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT---SAAGLLSAF--APNYYLL  120 (439)
Q Consensus        47 ~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~---~~~~~~~~~--~~~~~~~  120 (439)
                      ....+.|.+. +..|.++.+.++...+..++..++.+++|+++||+++++....+..+.   .++.+....  ..+.+..
T Consensus       269 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T TIGR00712       269 GVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVD  348 (438)
T ss_pred             HHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            3344555554 557999999999999999999999999999999996543222222221   122222222  2234444


Q ss_pred             HHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 013655          121 LFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVG-TILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL  198 (439)
Q Consensus       121 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g-~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~  198 (439)
                      .+..++.|++.... ........|.+|+++||+++|+.+....+| ..++|.+.+.+.+..||...+++..+..+++.+.
T Consensus       349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  428 (438)
T TIGR00712       349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  428 (438)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            44445555543332 222345679999999999999998887776 4689999999999999999988877766665554


Q ss_pred             -HhcccCC
Q 013655          199 -YSVTPES  205 (439)
Q Consensus       199 -~~~~~~~  205 (439)
                       ++..||+
T Consensus       429 ~~~~~~~~  436 (438)
T TIGR00712       429 LIVVMIGE  436 (438)
T ss_pred             HHHHHhhc
Confidence             4444554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.20  E-value=2e-09  Score=103.15  Aligned_cols=136  Identities=17%  Similarity=0.230  Sum_probs=98.8

Q ss_pred             HHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc-----chHHHHHHHH
Q 013655           51 VGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA-----PNYYLLLFFR  124 (439)
Q Consensus        51 ~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  124 (439)
                      ..|. +.+++|.++.+.+++.+...++..+++++.|++.||+|+|+.+..+..+..++.++..+.     ++.+.+.+..
T Consensus       228 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (385)
T TIGR00710       228 GAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPM  307 (385)
T ss_pred             cChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            3344 456789999999999999999999999999999999999999888877777666555442     2344555566


Q ss_pred             HHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 013655          125 CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGL  187 (439)
Q Consensus       125 ~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~  187 (439)
                      ++.|++.+.. +.......|..| ++|+++.++.+.....++.+.+++.+.+.+..+|...+..
T Consensus       308 ~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       308 MFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHHH
Confidence            7788887776 556667777765 6799999998877665444554555555554455544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09848 glucuronide transporter; Provisional

Probab=99.19  E-value=2e-09  Score=105.48  Aligned_cols=135  Identities=15%  Similarity=0.144  Sum_probs=103.9

Q ss_pred             HHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc--hHHHHHHH
Q 013655           47 LLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP--NYYLLLFF  123 (439)
Q Consensus        47 ~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  123 (439)
                      ......|++. +.+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+  +++.+.+.
T Consensus       246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~  325 (448)
T PRK09848        246 AVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVA  325 (448)
T ss_pred             HHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHH
Confidence            3344455444 45677666555555555677888999999999999999999999988888877776654  56777777


Q ss_pred             HHHHhhccCcc-hhhHHHHhhhcCCC-------chhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655          124 RCLVGLGLGGG-PVLASWFLEFIPAP-------NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW  181 (439)
Q Consensus       124 ~~l~G~~~g~~-~~~~~~~~~~~~~~-------~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~  181 (439)
                      .++.|+|.+.. +...+...|..|.+       ++|...|+.+....+|..+++.+.+.+.+..||
T Consensus       326 ~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        326 LAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88889998887 66667777776543       469999999999999999999999988766554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.19  E-value=6.8e-10  Score=106.94  Aligned_cols=149  Identities=14%  Similarity=0.056  Sum_probs=113.8

Q ss_pred             HHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655           50 FVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSD-NFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG  128 (439)
Q Consensus        50 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  128 (439)
                      ...|.+.++.+.++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.++.++++.+.+..++.|
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  308 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFY  308 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4566666665557788899888887777666666666665 466677777787788888877778888877777777888


Q ss_pred             hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc---c-hhHHHHHhHHHHHHHHHH
Q 013655          129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL---G-WRWLLGLSAFPSSLLLLL  198 (439)
Q Consensus       129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~---g-~~~~~~~~~~~~~~~~~~  198 (439)
                      ++.+.. +...+++.+..|+++||+++|+.+....+|..+||.+++++.+..   + ....+...++..++..+.
T Consensus       309 ~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        309 IGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            887766 667788899999999999999999999999999999999998864   2 245555555555555443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.19  E-value=1.6e-09  Score=103.44  Aligned_cols=159  Identities=13%  Similarity=0.079  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc-chH
Q 013655           40 SEAMEMMLLSFVGPAVQSLWH-LSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA-PNY  117 (439)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~  117 (439)
                      ...........+.+.+.++.| .+....+.+.++..+.-++.-...+++..|+|.|+++.++.+..++=..+++.. ++.
T Consensus       218 l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~  297 (400)
T PF03825_consen  218 LIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPW  297 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            334444444445555667777 778888888888888888999999999999999999999999999888888877 454


Q ss_pred             HHHHH----HHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHH-HHHHHHHHHHHHHHHhhcccchh------HHH
Q 013655          118 YLLLF----FRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT-FWTVGTILEAGIAWLVMPRLGWR------WLL  185 (439)
Q Consensus       118 ~~~~~----~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~-~~~~g~~i~~~l~~~l~~~~g~~------~~~  185 (439)
                      +...+    ...+.|+..+.. .....++.+..|++.|+++.++++. ..++|..+|..++|++.|.+|-+      ..+
T Consensus       298 ~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~  377 (400)
T PF03825_consen  298 PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVF  377 (400)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            44333    345689999988 7777999999999999999999765 57899999999999999987744      344


Q ss_pred             HHhHHHHHHHHHH
Q 013655          186 GLSAFPSSLLLLL  198 (439)
Q Consensus       186 ~~~~~~~~~~~~~  198 (439)
                      .+.+++.++..++
T Consensus       378 ~v~a~~~~~~~~~  390 (400)
T PF03825_consen  378 LVFAVMALVILVL  390 (400)
T ss_pred             HHHHHHHHHHHHH
Confidence            4555544444443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.18  E-value=1.9e-09  Score=102.37  Aligned_cols=167  Identities=16%  Similarity=0.086  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcch---hHHHH-HHHHHHHHH
Q 013655           32 AYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR---RKGFL-ITAIVTSAA  107 (439)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~---r~~~~-~~~~~~~~~  107 (439)
                      +...+.+++.....+....+.|.+.++.|.+.. .+....+..+...++   .++++||..|   |+... ...++.++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~  270 (368)
T TIGR00903       195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAF  270 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            333344455555555556677877788888764 566666655555555   4677777654   33333 234444444


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 013655          108 GLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG  186 (439)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~  186 (439)
                      ..+..+..+.+..++...+.|++.... +..+++.+|.+|++.||++.|+.+....+|+..+|++.+.+..  +.+..|.
T Consensus       271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~  348 (368)
T TIGR00903       271 FLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFT  348 (368)
T ss_pred             HHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHH
Confidence            445555555545555556666666665 5667889999999999999999999999999999999888774  7777788


Q ss_pred             HhHHHHHHHHHHHhcccC
Q 013655          187 LSAFPSSLLLLLYSVTPE  204 (439)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~  204 (439)
                      +.+++.++..+....+++
T Consensus       349 ~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       349 FLAILITIAFAIALLLPN  366 (368)
T ss_pred             HHHHHHHHHHHHHHhCCC
Confidence            777777776665544454

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.18  E-value=1.6e-09  Score=104.13  Aligned_cols=161  Identities=12%  Similarity=-0.046  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh-hc---
Q 013655           39 ISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA-FA---  114 (439)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~-~~---  114 (439)
                      +..+......+...|++.++ ..+.........+..+...+..+++|+++||+|+|+++.++.++.+++..... ..   
T Consensus       262 ~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~  340 (462)
T PRK15034        262 LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT  340 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33333333445555655544 23333333334455678888999999999999999999988877666653322 22   


Q ss_pred             --chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCC---------------------CchhhHHHHHHHHHHHHHHHHHH
Q 013655          115 --PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPA---------------------PNRGFWMVIFQTFWTVGTILEAG  170 (439)
Q Consensus       115 --~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~---------------------~~rg~~~~~~~~~~~~g~~i~~~  170 (439)
                        .+++.+.+..+...++.|.. .....++.+.+|+                     ++-|.+.|+......+|+.+.|.
T Consensus       341 ~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~  420 (462)
T PRK15034        341 GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQ  420 (462)
T ss_pred             cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhH
Confidence              24566666555555555555 4566677777764                     25678889999999999999998


Q ss_pred             HHHHhhcccc-hhHHHHHhHHHHHHHHHHHh
Q 013655          171 IAWLVMPRLG-WRWLLGLSAFPSSLLLLLYS  200 (439)
Q Consensus       171 l~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~  200 (439)
                      +.+...+..| +...|+...+..+++.++.+
T Consensus       421 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        421 AFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            8887776654 77788887777777766533

>TIGR00896 CynX cyanate transporter

Probab=99.18  E-value=6.7e-10  Score=105.28  Aligned_cols=137  Identities=15%  Similarity=0.043  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 013655           43 MEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGLLSAFAPNYYLLL  121 (439)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (439)
                      ........+.|.+.++.|.+..+.+.+.+...++..+++++.|++.||+ +||+.+..+.++.+++.+...+.++.+...
T Consensus       211 ~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
T TIGR00896       211 GLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA  290 (355)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            3334444566777777899999999999999999999999999999999 566677777777777777666655433322


Q ss_pred             HHHHHHhhccCcc-hhhHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655          122 FFRCLVGLGLGGG-PVLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG  180 (439)
Q Consensus       122 ~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g  180 (439)
                       ..++.|++.+.. +...+.+.+.. ++++++...++.+....+|..++|.+.+++.+..|
T Consensus       291 -~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       291 -WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             -HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             456789988887 65556665444 45677899999999899999999999999988765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.18  E-value=3.9e-10  Score=107.56  Aligned_cols=148  Identities=19%  Similarity=0.131  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc-hhHHHH-HHH-HHHHHHHHHHhh
Q 013655           38 WISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG-RRKGFL-ITA-IVTSAAGLLSAF  113 (439)
Q Consensus        38 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G-~r~~~~-~~~-~~~~~~~~~~~~  113 (439)
                      .+...........+.|. +.+++|.+..+.+++.+...++..++.++.|++.||.+ +|+... ... ....++......
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (379)
T TIGR00881       225 YVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL  304 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc
Confidence            33333333334444444 45678999999999999999999999999999999864 333222 221 222222222222


Q ss_pred             --cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 013655          114 --APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLL  185 (439)
Q Consensus       114 --~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~  185 (439)
                        ..+.+...+..++.|+..... +....+..|..|+++||++.|+.+....+|..++|.+.+.+.+.+||+..|
T Consensus       305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       305 NPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             CcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence              234555556666777655444 455577889999999999999999999999999999999999999998653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.17  E-value=1.4e-09  Score=119.13  Aligned_cols=142  Identities=18%  Similarity=0.078  Sum_probs=118.1

Q ss_pred             HHHHHHhhhcCCCch-hhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655           50 FVGPAVQSLWHLSPN-QESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG  128 (439)
Q Consensus        50 ~~~~~~~~~~~~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  128 (439)
                      .+.+++.+.+|.+.. ..+++.+...++.+++++++|++.||+++++.+.++.++.+++.++..+.++.+.++++.++.|
T Consensus       254 ~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  333 (1146)
T PRK08633        254 NFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFG  333 (1146)
T ss_pred             hhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            334455677899999 9999999999999999999999999999999988888888888888888888888888899999


Q ss_pred             hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHhHHH
Q 013655          129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-RLGWRWLLGLSAFP  191 (439)
Q Consensus       129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-~~g~~~~~~~~~~~  191 (439)
                      ++.+.. +...+++.+..|++.||+++|+.+....+|.++++.+++.+.. .+++...+++.+.+
T Consensus       334 ~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        334 FSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             HHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            998887 6677888999999999999999999999999888887776643 23455555554443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.16  E-value=6e-09  Score=102.68  Aligned_cols=139  Identities=11%  Similarity=0.003  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh-----cchH
Q 013655           43 MEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF-----APNY  117 (439)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-----~~~~  117 (439)
                      ........+.+++.+...-+....+++.+...++.+++.+++++++||+|+|+.+..+..+.+++.+...+     .++.
T Consensus       245 ~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (473)
T PRK10429        245 IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNA  324 (473)
T ss_pred             HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhH
Confidence            33344444455565554445667777778777899999999999999999999998888776655544332     3456


Q ss_pred             HHHHHHHHHHhhccCcc-hhhHHHHhhhcC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655          118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIP-------APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW  181 (439)
Q Consensus       118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-------~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~  181 (439)
                      +.+++..++.|++.+.. ....++++|..+       .++.|..+|......-+|..+++.+.+++.+..|+
T Consensus       325 ~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        325 LLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            66777778888888877 666678888754       44457788999999999999999999998876665

>PRK10133 L-fucose transporter; Provisional

Probab=99.13  E-value=2.8e-09  Score=103.72  Aligned_cols=141  Identities=13%  Similarity=0.077  Sum_probs=110.6

Q ss_pred             HHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhcc
Q 013655           53 PAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGL  131 (439)
Q Consensus        53 ~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  131 (439)
                      +++ .+.+|.++.+.++....+.++..+++++.|++.||+|+|+++..+.++.+++.++..+.++.+ .+...++.|++.
T Consensus       283 ~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~  361 (438)
T PRK10133        283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFM  361 (438)
T ss_pred             HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHH
Confidence            343 456899999999999999999999999999999999999999888877777766666665543 345667889999


Q ss_pred             Ccc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHH
Q 013655          132 GGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLL  196 (439)
Q Consensus       132 g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~~  196 (439)
                      +.. |...+...+..++ +.+.+.++... ..+|+.++|++.+.+.+..| -+..|++..+..+...
T Consensus       362 ~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        362 SIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            988 7777888887765 46777787764 44688889999999999887 7777776555444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.13  E-value=2e-09  Score=117.66  Aligned_cols=141  Identities=16%  Similarity=0.080  Sum_probs=112.7

Q ss_pred             HHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc---------------
Q 013655           51 VGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA---------------  114 (439)
Q Consensus        51 ~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---------------  114 (439)
                      +.| ++.+.+|.+..+.|++.+++.++.++++++.|+++|+.++++.+..+.++.+++.+...+.               
T Consensus       247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  326 (1140)
T PRK06814        247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL  326 (1140)
T ss_pred             HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence            344 4456689999999999999999999999999999998887776666655555544433332               


Q ss_pred             -----chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHH
Q 013655          115 -----PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-RLGWRWLLGL  187 (439)
Q Consensus       115 -----~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-~~g~~~~~~~  187 (439)
                           ++.+.+++..++.|++.+.. +...+++.+..|++.||+++|+.+....+|..+++++.+.+.+ ..++...+++
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~  406 (1140)
T PRK06814        327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF  406 (1140)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence                 66777888888999998888 6677899999999999999999999999999999999998874 4566666655


Q ss_pred             hHHH
Q 013655          188 SAFP  191 (439)
Q Consensus       188 ~~~~  191 (439)
                      .+++
T Consensus       407 ~~~~  410 (1140)
T PRK06814        407 IALA  410 (1140)
T ss_pred             HHHH
Confidence            5443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.12  E-value=1.4e-09  Score=107.67  Aligned_cols=139  Identities=14%  Similarity=0.093  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh----c
Q 013655           40 SEAMEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF----A  114 (439)
Q Consensus        40 ~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~----~  114 (439)
                      ...........+.|.+. +.+|.++.+.++......++..++.++.|++.||+|||+.+..+..+.+++..+..+    .
T Consensus       266 ~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~  345 (485)
T TIGR00711       266 LLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPD  345 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            33333344445556554 558999999999999999999999999999999999999999998888888777662    2


Q ss_pred             chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013655          115 PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR  178 (439)
Q Consensus       115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~  178 (439)
                      .+++.+....++.|++.+.. ++......+..|+++||.+.|+.+....+|..+|+.+.+.+.++
T Consensus       346 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       346 TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666777788899998887 55666677888999999999999999999999999999988664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.12  E-value=1.8e-09  Score=102.32  Aligned_cols=118  Identities=13%  Similarity=0.144  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHhhhcCCCchhhHHHHHHHH-HHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc---------
Q 013655           45 MMLLSFVGPAVQSLWHLSPNQESLITSVVF-AGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA---------  114 (439)
Q Consensus        45 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---------  114 (439)
                      ........|.+.+++|.+..+.+.+..+.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+.         
T Consensus       225 ~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (356)
T TIGR00901       225 DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGI  304 (356)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            334444555555669999999998887765 6778999999999999999999888888877766655442         


Q ss_pred             --chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHH
Q 013655          115 --PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWT  162 (439)
Q Consensus       115 --~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~  162 (439)
                        ++.+.+..+.++.+++.+.. +...+++.|.+|+++||+.+|+.+...+
T Consensus       305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       305 TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence              45677777888889998888 7778999999999999999999877654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.11  E-value=4.9e-09  Score=100.83  Aligned_cols=134  Identities=16%  Similarity=0.127  Sum_probs=91.8

Q ss_pred             HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCc
Q 013655           54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGG  133 (439)
Q Consensus        54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  133 (439)
                      .+.+++|.++.+.+.+.+...++..++.++.+++.||+|||+.+..+..+..++.++..+.++.+..+....+.+.+.+.
T Consensus       229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  308 (392)
T PRK10473        229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV  308 (392)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999888888887777766555444444444444333


Q ss_pred             c-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655          134 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS  192 (439)
Q Consensus       134 ~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~  192 (439)
                      . +.  ....+..|.++|+   |......+++..+++.+++++.+..|+.......+.+.
T Consensus       309 ~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        309 GFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            3 22  2223344544443   33344455666777777777777777765444444433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.11  E-value=5.9e-09  Score=100.20  Aligned_cols=144  Identities=15%  Similarity=0.041  Sum_probs=112.3

Q ss_pred             HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccC
Q 013655           53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLG  132 (439)
Q Consensus        53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g  132 (439)
                      +++.+.+|.++.+.|++.+...++..+++++.+++.||.++|+++..+. +.++..++..+.++++...+..++.|++.+
T Consensus       230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g  308 (393)
T PRK11195        230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGG  308 (393)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence            3455678999999999999999999999999999999999998887775 344545555666777777778888999988


Q ss_pred             cc-hhhHHHHhhhcCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 013655          133 GG-PVLASWFLEFIPAPN-RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL  198 (439)
Q Consensus       133 ~~-~~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~  198 (439)
                      .. ++..+.+.+..|++. +|++.++.+....+|..++..+.+.+ +.+|-+..+.+.++..++...+
T Consensus       309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence            87 556677777655554 79999999999999999999998855 5677777666655555544433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.10  E-value=4.2e-09  Score=103.68  Aligned_cols=172  Identities=14%  Similarity=0.130  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHH--------HHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKG--------FLITA  101 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~--------~~~~~  101 (439)
                      ++...+..+...........++|.+ .+.+|.+..+.++..++..++..++.+++|+++||+++|+.        +..+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  342 (465)
T TIGR00894       263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI  342 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            4444555555555555555566655 56689999999999999999999999999999999865421        11111


Q ss_pred             HH--HHHHHHHHhh-cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655          102 IV--TSAAGLLSAF-APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP  177 (439)
Q Consensus       102 ~~--~~~~~~~~~~-~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~  177 (439)
                      ..  .++..+.... ..+.+..+++..+.+.+.+.. +.......+..| +.+|.+.|+.+....+|+.++|.+.+++.+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~  421 (465)
T TIGR00894       343 GGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILS  421 (465)
T ss_pred             HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence            11  1111212222 234444444555555555544 333344456655 489999999999999999999999999876


Q ss_pred             cc---chhHHHHHhHHHHHHHHHHHhccc
Q 013655          178 RL---GWRWLLGLSAFPSSLLLLLYSVTP  203 (439)
Q Consensus       178 ~~---g~~~~~~~~~~~~~~~~~~~~~~~  203 (439)
                      ..   +|+..|.+.++..++..+.....+
T Consensus       422 ~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       422 QDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            43   488889888888777766655543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.10  E-value=2e-07  Score=93.96  Aligned_cols=153  Identities=17%  Similarity=0.209  Sum_probs=123.5

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHHHHhhcch--------HHH
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTSAAGLLSAFAPN--------YYL  119 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~--------~~~  119 (439)
                      ..+..++.+.+|.+.+.+..+...+.....+..+++|+++|+ +|+++.+.++.++..++..+.++...        ...
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            334455667789999999999999988888999999999997 69999999999999988887776421        234


Q ss_pred             HHHHHHHHhhccCcc-hhhHHHHhhhcCCC---chhhHHHHHHHHHHHHHHHHHHHHHHhhccc-------chhHHHHHh
Q 013655          120 LLFFRCLVGLGLGGG-PVLASWFLEFIPAP---NRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-------GWRWLLGLS  188 (439)
Q Consensus       120 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~---~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~-------g~~~~~~~~  188 (439)
                      .+++..+..+|.|++ +...+...+.++++   +|-..+.++..+.++|+++++++.+++.+.+       +|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            567778888899999 88889999888754   3677888889999999999999999987443       699999998


Q ss_pred             HHHHHHHHHHHhc
Q 013655          189 AFPSSLLLLLYSV  201 (439)
Q Consensus       189 ~~~~~~~~~~~~~  201 (439)
                      ++..++++++...
T Consensus       168 ~i~m~ia~lvf~~  180 (654)
T TIGR00926       168 AILMILALIVFMA  180 (654)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888877665443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.10  E-value=2.6e-09  Score=103.34  Aligned_cols=156  Identities=19%  Similarity=0.231  Sum_probs=118.1

Q ss_pred             HHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc---c--hhHHHHHHHHHHHHHHHHHhhcc----hHH
Q 013655           48 LSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF---G--RRKGFLITAIVTSAAGLLSAFAP----NYY  118 (439)
Q Consensus        48 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~---G--~r~~~~~~~~~~~~~~~~~~~~~----~~~  118 (439)
                      .....|++.+++|+++++...+.+...+...+ .++.|.++|-+   |  ||+-++++.++.+++.+..+..+    +..
T Consensus         9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen    9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            34556788999999999999998888887755 68899999986   3  55556677777665555555433    456


Q ss_pred             HHHHHHHHHhhccCcc-hhhHHHHhhhcC--CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655          119 LLLFFRCLVGLGLGGG-PVLASWFLEFIP--APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL  195 (439)
Q Consensus       119 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~--~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~  195 (439)
                      ...++.++..+|.... .+.-+.+.|...  ++.||...+.......+|++++..++|.+.+..+++..|.+.+++.++.
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM  167 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence            6666777788888877 566678877763  3337888889999999999999999999999999999998887776666


Q ss_pred             HHHHhcccC
Q 013655          196 LLLYSVTPE  204 (439)
Q Consensus       196 ~~~~~~~~~  204 (439)
                      .+..+++.|
T Consensus       168 ~~~~~~~~~  176 (433)
T PF03092_consen  168 LIVALFLLE  176 (433)
T ss_pred             HHHHHHhhh
Confidence            555444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.08  E-value=3e-09  Score=105.49  Aligned_cols=131  Identities=15%  Similarity=0.076  Sum_probs=109.5

Q ss_pred             HHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh---cchHHHHHH
Q 013655           47 LLSFVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF---APNYYLLLF  122 (439)
Q Consensus        47 ~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  122 (439)
                      ...++.| ++++.+|.|+.+.|+......++..++.++.|++.||+|+|+.+..+.++.+++.++..+   .++.+...+
T Consensus       277 ~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  356 (495)
T PRK14995        277 GFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWG  356 (495)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence            3334444 455668999999999999999999999999999999999999998888888777665543   245666677


Q ss_pred             HHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655          123 FRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP  177 (439)
Q Consensus       123 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~  177 (439)
                      ..++.|++.|.. +.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus       357 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        357 LMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999987 6666777888999999999999999999999999999998754

>PRK09669 putative symporter YagG; Provisional

Probab=99.07  E-value=2.1e-08  Score=98.16  Aligned_cols=131  Identities=15%  Similarity=0.156  Sum_probs=96.5

Q ss_pred             HHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHh
Q 013655           51 VGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF--APNYYLLLFFRCLVG  128 (439)
Q Consensus        51 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G  128 (439)
                      ..+++.+..--++...+.+.....+...++.+++++++||+|+|+.+..+.++.+++.+...+  .++.+.+++..++.|
T Consensus       251 ~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g  330 (444)
T PRK09669        251 ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFN  330 (444)
T ss_pred             hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            334444433223444455666677888889999999999999999998887766544433222  346777788888999


Q ss_pred             hccCcc-hhhHHHHhhhcC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655          129 LGLGGG-PVLASWFLEFIP-------APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW  181 (439)
Q Consensus       129 ~~~g~~-~~~~~~~~~~~~-------~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~  181 (439)
                      ++.+.. +...++++|..+       .++.|..+|....+..+|..+++.+++++.+..|+
T Consensus       331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999888 667788887775       34457788999999999999999999998887766

>PRK11043 putative transporter; Provisional

Probab=99.05  E-value=3.6e-08  Score=95.11  Aligned_cols=135  Identities=15%  Similarity=0.119  Sum_probs=99.1

Q ss_pred             HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH---Hhh--cchHHHHHHH
Q 013655           49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL---SAF--APNYYLLLFF  123 (439)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~  123 (439)
                      ....|.+.+++|.+..+.|+......++..++.+..+++.||+|+|+.........+++.+.   ...  .++.+..++.
T Consensus       223 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        223 LTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             HHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            34456677788999999999888888999999999999999999998765554444443322   222  3455555666


Q ss_pred             HHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 013655          124 RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL  184 (439)
Q Consensus       124 ~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~  184 (439)
                      ..+.|++.+.. +.......+..| +++|++.|+.+.....+...++.+.+.+.+.......
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~  363 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTG  363 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHH
Confidence            67778877776 555566666665 5799999999998888888999999988775444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.05  E-value=7.2e-09  Score=100.85  Aligned_cols=143  Identities=21%  Similarity=0.376  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc-
Q 013655           38 WISEAMEMMLLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP-  115 (439)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-  115 (439)
                      .++............+++.++ +|.+ ...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ 
T Consensus       234 ~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~  312 (428)
T PF13347_consen  234 FFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP  312 (428)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh
Confidence            344444444445455555555 4444 6778888899999999999999999999999999999999999999888876 


Q ss_pred             -hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655          116 -NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIP-------APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW  181 (439)
Q Consensus       116 -~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-------~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~  181 (439)
                       +.+.+++..++.|++.+.. ....++++|..+       +++.|..+|+.+....+|..+++.+.+.+.+..|+
T Consensus       313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence             8999999999999999988 666688887775       34568899999999999999999999988766554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.03  E-value=3.8e-08  Score=94.10  Aligned_cols=120  Identities=13%  Similarity=0.045  Sum_probs=82.9

Q ss_pred             HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH---hh-cchHHHHHHHHHHHhh
Q 013655           54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS---AF-APNYYLLLFFRCLVGL  129 (439)
Q Consensus        54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~G~  129 (439)
                      .+.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..+..+..   .. ..+++...++..+.+.
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG  299 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4556789999999999999999999999999999999999999888776544332222   22 2244444444444444


Q ss_pred             ccCcc-hhhHHHHhhhcCCCchhhHHHHHHHH-HHHHHHHHHHHHHH
Q 013655          130 GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTF-WTVGTILEAGIAWL  174 (439)
Q Consensus       130 ~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~-~~~g~~i~~~l~~~  174 (439)
                      +.+.. ......+.|..| +.+|++.++.+.. ..+|..+++.+++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44443 334455666655 7899999986554 55677777766543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.03  E-value=6e-09  Score=90.49  Aligned_cols=147  Identities=16%  Similarity=0.073  Sum_probs=111.9

Q ss_pred             HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH-HHHHHHhhcchHHHHHHHHHHHhhccC
Q 013655           54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS-AAGLLSAFAPNYYLLLFFRCLVGLGLG  132 (439)
Q Consensus        54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~G~~~g  132 (439)
                      .+.+.+|+|+...+-+.+......++.+++.|.++||+|++...+.+..+.. ++-....+  +.+.=.....+.|+...
T Consensus       290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys  367 (459)
T KOG4686|consen  290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS  367 (459)
T ss_pred             HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence            4678899999999999999999999999999999999999987776554433 33333333  23333456677888877


Q ss_pred             cc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc---hhH-HHHHhHHHHHHHHHHHhcc
Q 013655          133 GG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG---WRW-LLGLSAFPSSLLLLLYSVT  202 (439)
Q Consensus       133 ~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g---~~~-~~~~~~~~~~~~~~~~~~~  202 (439)
                      .. ...++.++...|+++.|++.|..+...++|-.+.|.+++.+.+.-|   |-- .|+..+.+++....+.+.+
T Consensus       368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            77 4577889999999999999999999999999999999999988655   333 3444555555555555544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.00  E-value=5.7e-09  Score=98.55  Aligned_cols=129  Identities=27%  Similarity=0.386  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHH-hhhcCCC-chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc---c
Q 013655           41 EAMEMMLLSFVGPAV-QSLWHLS-PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA---P  115 (439)
Q Consensus        41 ~~~~~~~~~~~~~~~-~~~~~~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---~  115 (439)
                      ............|.+ .+++|.+ ..+.+.+.+...+...++.++.|++.||+|+|+..........++.+...+.   +
T Consensus       218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (352)
T PF07690_consen  218 FFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSS  297 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHC
T ss_pred             HHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333444456666665 7889999 7999999999999999999999999999998887777776666666655544   3


Q ss_pred             hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Q 013655          116 NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEA  169 (439)
Q Consensus       116 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~  169 (439)
                      +....++..++.|++.+.. +....++.+..|+++||++.|+.+...++|..++|
T Consensus       298 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  298 SPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            4567777888899988887 77779999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.99  E-value=5.5e-09  Score=94.10  Aligned_cols=128  Identities=17%  Similarity=0.147  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHH----HHHHHHHHHhhccCcchhhHHHHhhhcCCC
Q 013655           73 VFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYY----LLLFFRCLVGLGLGGGPVLASWFLEFIPAP  148 (439)
Q Consensus        73 ~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~  148 (439)
                      ..+.-.-|.++.+++.||+|||+.+..+.++++++.++...+.+..    ++..+|++..   |+..+.+.+..|.+|..
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis---g~fqvaYvYtPEVyPTa  466 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS---GAFQVAYVYTPEVYPTA  466 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh---chheEEEEecCcccchh
Confidence            3445567889999999999999999999999999988877764432    2334554332   33356778889999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCC
Q 013655          149 NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPES  205 (439)
Q Consensus       149 ~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  205 (439)
                      .|+.+.|.......+|+++.|.++  +.....-..+..+.+.+++++.+...++|-.
T Consensus       467 vRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  467 VRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             hhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence            999999999999999999999999  3333344455666666677776666666643

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.93  E-value=5.9e-09  Score=89.74  Aligned_cols=152  Identities=13%  Similarity=0.066  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchH
Q 013655           38 WISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNY  117 (439)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~  117 (439)
                      +.....+.+...+++-++.+.++....++|.+.....-...+.+.+.|.++|+-|||+.-+.-++...+++ +.-.+++|
T Consensus        46 yslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqY  124 (454)
T KOG4332|consen   46 YSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQY  124 (454)
T ss_pred             HHHHHhhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCce
Confidence            33444455667777778888999999999999988888888999999999999999997655444444433 33457889


Q ss_pred             HHHHHHHHHHhhccCcc-hhhHHH-HhhhcCCCc-----hhhHHHH-HHHHHHHHHHHHHHHHHHhhcccc--hhHHHHH
Q 013655          118 YLLLFFRCLVGLGLGGG-PVLASW-FLEFIPAPN-----RGFWMVI-FQTFWTVGTILEAGIAWLVMPRLG--WRWLLGL  187 (439)
Q Consensus       118 ~~~~~~~~l~G~~~g~~-~~~~~~-~~~~~~~~~-----rg~~~~~-~~~~~~~g~~i~~~l~~~l~~~~g--~~~~~~~  187 (439)
                      -+++++|++.|+..+.. ...-++ +.|...++.     ...-++- ...++++-.+++.+.+..+.+.++  --.+|-.
T Consensus       125 kVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdA  204 (454)
T KOG4332|consen  125 KVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDA  204 (454)
T ss_pred             EEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHH
Confidence            99999999999998887 444454 466553221     1111222 224445555566666666666554  3344544


Q ss_pred             hHH
Q 013655          188 SAF  190 (439)
Q Consensus       188 ~~~  190 (439)
                      .+.
T Consensus       205 Aac  207 (454)
T KOG4332|consen  205 AAC  207 (454)
T ss_pred             HHH
Confidence            433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.92  E-value=1.4e-07  Score=85.46  Aligned_cols=169  Identities=17%  Similarity=0.107  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGL  109 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~  109 (439)
                      .+.+.+.+-++.+..+....++|.+..|.|+|..+.|++.+...+.....++....+++|. .+|+..+...+++.++.+
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~  289 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLV  289 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            4444455566667777888889999999999999999999999999999999999999975 467777777777888888


Q ss_pred             HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHH
Q 013655          110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIP-APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLG  186 (439)
Q Consensus       110 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~  186 (439)
                      .+.+.+.-..+.- .++.|+|.|.. +.....+....+ +++-++..|+.+....+=..+||.+.|++.|..| |+..++
T Consensus       290 G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~  368 (395)
T COG2807         290 GLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLV  368 (395)
T ss_pred             HHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHH
Confidence            7777764332222 48999999988 777777766554 4556777788888888888899999999998765 998888


Q ss_pred             HhHHHHHHHHHHHh
Q 013655          187 LSAFPSSLLLLLYS  200 (439)
Q Consensus       187 ~~~~~~~~~~~~~~  200 (439)
                      ......+...+.-+
T Consensus       369 ~l~~~~i~m~i~Gl  382 (395)
T COG2807         369 LLALATLLMLIFGL  382 (395)
T ss_pred             HHHHHHHHHHHHHh
Confidence            87777666655433

>PRK11462 putative transporter; Provisional

Probab=98.92  E-value=4.5e-07  Score=88.94  Aligned_cols=120  Identities=13%  Similarity=0.113  Sum_probs=80.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhccCcc-hhhH
Q 013655           62 SPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP--NYYLLLFFRCLVGLGLGGG-PVLA  138 (439)
Q Consensus        62 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~-~~~~  138 (439)
                      ++...+.+...+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+  +.+.+++..++.|++.+.. +...
T Consensus       261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~  340 (460)
T PRK11462        261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW  340 (460)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677788888999999999999999999887755554444333333332  2333444556677776655 4445


Q ss_pred             HHHhhhcC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655          139 SWFLEFIP-------APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW  181 (439)
Q Consensus       139 ~~~~~~~~-------~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~  181 (439)
                      ++++|..+       .++.|..++.......+|..+++.+++++.+..|+
T Consensus       341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            66666554       34446666777788999999999999888765554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.90  E-value=2.1e-07  Score=88.58  Aligned_cols=145  Identities=19%  Similarity=0.237  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 013655           37 GWISEAMEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP  115 (439)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~  115 (439)
                      ..++........+....++. -.+|.+.....+.......+..++.+++.++++|+|+|+++.++.++.+++.++..+.+
T Consensus       244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence            34444444455555555554 34677777888888888888888899999999999999999999999999999888876


Q ss_pred             --hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655          116 --NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIP-------APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW  181 (439)
Q Consensus       116 --~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-------~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~  181 (439)
                        +.+.+++..++.+++.+.. +..+++++|..+       .++-|...|....+.-+|..++..+.++..+..|+
T Consensus       324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence              6788888889999998888 666677765542       34558888889999999999999999988776653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.88  E-value=9.6e-08  Score=92.21  Aligned_cols=140  Identities=10%  Similarity=-0.043  Sum_probs=101.2

Q ss_pred             HHHHHhhhc--CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655           51 VGPAVQSLW--HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG  128 (439)
Q Consensus        51 ~~~~~~~~~--~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  128 (439)
                      +++.+.++.  +.+....+...+.+..+..+|.++++++.||+++|+++.++.++.++..++..+.++... ....++.|
T Consensus       254 ~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~g  332 (410)
T TIGR00885       254 FIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCS  332 (410)
T ss_pred             HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence            344443443  444455565667777888999999999999999999998888888888888888776544 45556667


Q ss_pred             hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc------chhHHHHHhHHHHH
Q 013655          129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL------GWRWLLGLSAFPSS  193 (439)
Q Consensus       129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~------g~~~~~~~~~~~~~  193 (439)
                      ++.+.. |...+...+..+++.+....++...  .+|+.+.|++.|++.|..      +.+..|++..++.+
T Consensus       333 lf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       333 AFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            776666 8788888888887665444444443  399999999999999954      46777776544433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.87  E-value=3.9e-07  Score=87.69  Aligned_cols=128  Identities=16%  Similarity=0.132  Sum_probs=93.7

Q ss_pred             HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH-HHHHHHhh--cchHHHHHHHHHHHhhc
Q 013655           54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS-AAGLLSAF--APNYYLLLFFRCLVGLG  130 (439)
Q Consensus        54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~G~~  130 (439)
                      .+.+.+|.++.+.+++.....++..+++++.+++.||++++........+.+ +.......  ..+.+.+.+..++.|++
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  312 (394)
T PRK11652        233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG  312 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            4445589999999999999999999999999999999984433322222222 22222222  23566677778888888


Q ss_pred             cCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 013655          131 LGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR  182 (439)
Q Consensus       131 ~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~  182 (439)
                      .+.. +...+...+..| +++|.+.++.+....+|..+++.+++.+.....+.
T Consensus       313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~  364 (394)
T PRK11652        313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence            8877 777777788776 57899999999999999999999999876654333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.84  E-value=2.6e-07  Score=90.87  Aligned_cols=135  Identities=15%  Similarity=0.134  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH----hhhh-cchhHH--HHHHHHHHHHHHHHHhh---------cchHHHHHHHHHHHhh
Q 013655           66 ESLITSVVFAGMLVGAYSWGI----VSDN-FGRRKG--FLITAIVTSAAGLLSAF---------APNYYLLLFFRCLVGL  129 (439)
Q Consensus        66 ~g~~~~~~~~~~~~~~~~~g~----l~dr-~G~r~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~  129 (439)
                      .+++.+...+...+.+++..+    +.+| .+++..  +.+|.++.+++....++         ..+++.+++..++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            678888888888888888665    4443 223333  37788888888777664         3588999999999999


Q ss_pred             ccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHh
Q 013655          130 GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYS  200 (439)
Q Consensus       130 ~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  200 (439)
                      |.... +...+++.+..|++.||+++|++.....+|..+++.+.....+..+|...|...++..++..++.+
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMA  465 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHH
Confidence            99998 888899999999999999999999999999999999998877777888888877776666555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.83  E-value=6e-06  Score=79.78  Aligned_cols=142  Identities=10%  Similarity=0.020  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CchhhHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHL-----SPNQESLITSVVFAGMLVG-AYSWGIVSDNFGRRKGFLITAIVT  104 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~G~r~~~~~~~~~~  104 (439)
                      ++...+.+++..+.++.    +-.+.|.+.+     +...+.++-+...+...+. .++.+++++|++|++++-......
T Consensus         9 ~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F   84 (472)
T TIGR00769         9 FLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPF   84 (472)
T ss_pred             HHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHH
Confidence            44444444544444433    3456676655     3357788888887777776 899999999999999887766666


Q ss_pred             HHHHHHHhhc--c-----------------------------hHHHHHHHHHHHhhccCcc-h-hhHHHHhhhcCCCchh
Q 013655          105 SAAGLLSAFA--P-----------------------------NYYLLLFFRCLVGLGLGGG-P-VLASWFLEFIPAPNRG  151 (439)
Q Consensus       105 ~~~~~~~~~~--~-----------------------------~~~~~~~~~~l~G~~~g~~-~-~~~~~~~~~~~~~~rg  151 (439)
                      ....+++++.  |                             +.|...+..+...+..... . ..++..+|.+..++-.
T Consensus        85 ~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qak  164 (472)
T TIGR00769        85 LGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAK  164 (472)
T ss_pred             HHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            6555554432  1                             1233333444444433334 3 5568899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhh
Q 013655          152 FWMVIFQTFWTVGTILEAGIAWLVM  176 (439)
Q Consensus       152 ~~~~~~~~~~~~g~~i~~~l~~~l~  176 (439)
                      |..++...+.++|.++++.+..++.
T Consensus       165 Rfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       165 RFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.80  E-value=1.6e-08  Score=93.84  Aligned_cols=136  Identities=15%  Similarity=0.111  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh----cchhHHHH-HHHHHHHHHHHHHhh
Q 013655           39 ISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN----FGRRKGFL-ITAIVTSAAGLLSAF  113 (439)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~~~-~~~~~~~~~~~~~~~  113 (439)
                      +..-+.+..-..+.+++..+.|++....+.+....-+...+.+|+.|..+||    +||||.++ .+.++.+++.++..+
T Consensus        42 ~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~  121 (498)
T KOG0637|consen   42 AGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGY  121 (498)
T ss_pred             HHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhh
Confidence            3333444444555666777899999999999999999999999999999995    89877655 556667777777777


Q ss_pred             cchHH-----------------HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhh-HHHHHHHHHHHHHHHHHHHHHH
Q 013655          114 APNYY-----------------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGF-WMVIFQTFWTVGTILEAGIAWL  174 (439)
Q Consensus       114 ~~~~~-----------------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~-~~~~~~~~~~~g~~i~~~l~~~  174 (439)
                      +.++.                 .++++..+.-++.-.. .++-+++.|....+++.+ +++.+..+.++|+.+|..++++
T Consensus       122 aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  122 AADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             HhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence            65432                 2333333444445455 667788999887766666 9999999999999998888774

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.80  E-value=4.1e-07  Score=83.66  Aligned_cols=150  Identities=33%  Similarity=0.465  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch--HH
Q 013655           43 MEMMLLSFVGPAVQSLWHLSP--NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN--YY  118 (439)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~  118 (439)
                      ..........+.+..+++.+.  ...++..+...++..++.++.|.+.||+|||+.+..+......+.+...+..+  .+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T COG0477          16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA   95 (338)
T ss_pred             HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence            445555566677777777666  58899999999999999999999999999998888887765555566666655  88


Q ss_pred             HHHHHHHHHhhccCcc-hhhHHHHhhhcCC-CchhhHHHHHHH-HHHHHHHHHHHHHHHhhcc--cchhHHHHHhHHHH
Q 013655          119 LLLFFRCLVGLGLGGG-PVLASWFLEFIPA-PNRGFWMVIFQT-FWTVGTILEAGIAWLVMPR--LGWRWLLGLSAFPS  192 (439)
Q Consensus       119 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~-~~rg~~~~~~~~-~~~~g~~i~~~l~~~l~~~--~g~~~~~~~~~~~~  192 (439)
                      .+++.|++.|++.+.. +...+++.+..|+ ++|+...+.... ...+|..+++.+++.+...  .+|+..+.......
T Consensus        96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477          96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            9999999999999877 7777899999888 678999998888 5888888888777766553  57888555554444

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.76  E-value=4.2e-08  Score=92.88  Aligned_cols=162  Identities=14%  Similarity=0.063  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHH
Q 013655           41 EAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLL  120 (439)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (439)
                      .+........++-.-.++++-.+...|........+-++.-++.+++.+|+|+-+++.+++....+=.+..++..|.|+.
T Consensus       383 mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~v  462 (618)
T KOG3762|consen  383 MGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMV  462 (618)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchhe
Confidence            33334344444444568888888888888888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHH-HHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 013655          121 LFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF-QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL  198 (439)
Q Consensus       121 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~-~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~  198 (439)
                      +..-+++|+..+.. ....+++....|++.|..+.++. ....++|-.+|.+|+|.+.+.+|-+..|.+.++.+++.++.
T Consensus       463 LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  463 LPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence            99999999999999 77779999999999999999995 46678899999999999999999999999998888877666


Q ss_pred             Hhcc
Q 013655          199 YSVT  202 (439)
Q Consensus       199 ~~~~  202 (439)
                      ...+
T Consensus       543 ~~~i  546 (618)
T KOG3762|consen  543 FISI  546 (618)
T ss_pred             HHHh
Confidence            5444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1.9e-07  Score=90.56  Aligned_cols=172  Identities=13%  Similarity=0.123  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcch---------hHHHHH
Q 013655           30 VLAYAGMGWISEAMEMMLLSFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR---------RKGFLI   99 (439)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~---------r~~~~~   99 (439)
                      .++.+++..+........+..+.|.+ .+.+|++..+.|++.++..+...+..+++|.++||.-+         |..-.+
T Consensus       259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i  338 (466)
T KOG2532|consen  259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI  338 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence            45566677777777777777777755 46689999999999999999999999999999998754         222345


Q ss_pred             HHHHHHHHHHHHhhcch--HHHHHHHHHHHhhccCcchhhHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013655          100 TAIVTSAAGLLSAFAPN--YYLLLFFRCLVGLGLGGGPVLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVM  176 (439)
Q Consensus       100 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~g~~~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~  176 (439)
                      +....+++.+..++.++  .+..+++. ..+.+..+......+....- .+++-+..+|+.+....+.+.++|.+.+.+.
T Consensus       339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l-~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~  417 (466)
T KOG2532|consen  339 AFGGPAVFLLVLAFTSDEHRLLAVILL-TIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIV  417 (466)
T ss_pred             HHHHHHHHHHeeeecCCCcchHHHHHH-HHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEe
Confidence            66666666666676653  21222222 22222222211111222222 5678899999999999999999999999998


Q ss_pred             cc---cchhHHHHHhHHHHHHHHHHHhcc
Q 013655          177 PR---LGWRWLLGLSAFPSSLLLLLYSVT  202 (439)
Q Consensus       177 ~~---~g~~~~~~~~~~~~~~~~~~~~~~  202 (439)
                      +.   -.|+.+|++.+++.++..+.+.+.
T Consensus       418 ~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  418 TDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            42   369999999999988887665554

>TIGR00788 fbt folate/biopterin transporter

Probab=98.75  E-value=5.3e-08  Score=95.57  Aligned_cols=148  Identities=15%  Similarity=0.128  Sum_probs=117.5

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc----------chHHHHHHHHHH
Q 013655           57 SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA----------PNYYLLLFFRCL  126 (439)
Q Consensus        57 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l  126 (439)
                      +.+|.++.+.|++.....++.+++....+++.+|++.|+++.++.++.+++.+...+.          ++.+.+....++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            5689999999999999999999999999999999999999999999888877554311          333445555677


Q ss_pred             HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-----hhHHHHHhH---HHHHHHHH
Q 013655          127 VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-----WRWLLGLSA---FPSSLLLL  197 (439)
Q Consensus       127 ~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-----~~~~~~~~~---~~~~~~~~  197 (439)
                      .+++.+.. .+...++.+..|++.+|+..++.+...++|..+++.+++.+.+..|     ++..+....   ++.++.+.
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~  440 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP  440 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence            78887777 6667889999999999999999999999999999999999988777     555444333   33333444


Q ss_pred             HHhcccC
Q 013655          198 LYSVTPE  204 (439)
Q Consensus       198 ~~~~~~~  204 (439)
                      ...++|+
T Consensus       441 ~~~llP~  447 (468)
T TIGR00788       441 LLHLLPR  447 (468)
T ss_pred             HHHhCCC
Confidence            4456775

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=3.2e-06  Score=80.63  Aligned_cols=105  Identities=18%  Similarity=0.170  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCC
Q 013655           70 TSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP  148 (439)
Q Consensus        70 ~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~  148 (439)
                      .++.+....+++++++.+.|+.|+|+.+.++........+.+.+. |-+.+++...+.|+|.+.. ..-..+++|...++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            677788888999999999999999999999998888777666554 5667888899999999988 44558999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013655          149 NRGFWMVIFQTFWTVGTILEAGIAWLV  175 (439)
Q Consensus       149 ~rg~~~~~~~~~~~~g~~i~~~l~~~l  175 (439)
                      .+.+..++.-.....+.++|..+...+
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheee
Confidence            999999998888888888876665443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.74  E-value=3.2e-07  Score=84.38  Aligned_cols=153  Identities=16%  Similarity=0.136  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHH
Q 013655           41 EAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLL  120 (439)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (439)
                      .+......+.+..++.+..|.+..+.+...+.+..+.++|.+++.++..|+...|.+.+..+...+.++...+.++.+.+
T Consensus       249 VG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~  328 (422)
T COG0738         249 VGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL  328 (422)
T ss_pred             HhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence            34444444444444555589999999999999999999999999999999999999998888888888888888885444


Q ss_pred             HHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHH
Q 013655          121 LFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL  196 (439)
Q Consensus       121 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~  196 (439)
                       .+.++.|+..+.. |...+...+..| ++ ....|..-....+|+++.|++.|++.|..|-...+.....++.+.+
T Consensus       329 -~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         329 -YALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             -HHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence             4455778888877 888888888888 33 3444555566678999999999999999998887775555555444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.71  E-value=2.6e-06  Score=79.10  Aligned_cols=147  Identities=18%  Similarity=0.180  Sum_probs=119.5

Q ss_pred             HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHh
Q 013655           53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSD-NFGRRKGFLITAIVTSAAGLLSAF---APNYYLLLFFRCLVG  128 (439)
Q Consensus        53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~G~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G  128 (439)
                      |+=.+.+|+|..+...+......|..++....|++.. |.++++...+++.+.+++..+..+   ..+.+.+....++.|
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            4445779999999999999999999999999999888 678888888888888777766544   467889999999999


Q ss_pred             hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc----------cchhHHHHHhHHHHHHHHH
Q 013655          129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR----------LGWRWLLGLSAFPSSLLLL  197 (439)
Q Consensus       129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~----------~g~~~~~~~~~~~~~~~~~  197 (439)
                      ++.|.. ....+.+.+...+++.|..+|.+.....++..++..+++.+.|.          .+|..+|.+-++..+++++
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence            999999 45558888999999999999999999999998988888877552          2466667766666666555


Q ss_pred             HH
Q 013655          198 LY  199 (439)
Q Consensus       198 ~~  199 (439)
                      +.
T Consensus       393 ll  394 (403)
T PF03209_consen  393 LL  394 (403)
T ss_pred             HH
Confidence            44

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.70  E-value=1.1e-05  Score=77.11  Aligned_cols=343  Identities=14%  Similarity=0.037  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHH----H
Q 013655           33 YAGMGWISEAMEMMLLSFVGPAVQSLW-HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA----A  107 (439)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~----~  107 (439)
                      .+....++...+.-++.+..+.+..+. .-+---.+...-.-.+..++.++..|.+.||..|.+++-.+.+..-+    +
T Consensus         6 ~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s   85 (432)
T PF06963_consen    6 RLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAAS   85 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHH
Confidence            445566666666667777767666554 22444444555555667778889999999999998887665543222    2


Q ss_pred             HHHHh--hc--c----hHHHH---HHHHHHHhhccCcchhhH------HHHhhhc--CCCchhhHHHHHHHHHHHHHHHH
Q 013655          108 GLLSA--FA--P----NYYLL---LFFRCLVGLGLGGGPVLA------SWFLEFI--PAPNRGFWMVIFQTFWTVGTILE  168 (439)
Q Consensus       108 ~~~~~--~~--~----~~~~~---~~~~~l~G~~~g~~~~~~------~~~~~~~--~~~~rg~~~~~~~~~~~~g~~i~  168 (439)
                      +.+..  +.  +    +.+..   ++...+.|.-.-......      -++....  +++...+..+...-.=-+.-+++
T Consensus        86 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~cklla  165 (432)
T PF06963_consen   86 CALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLA  165 (432)
T ss_pred             HHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence            21111  11  1    11222   222222222111111111      1222222  33444555555555555678899


Q ss_pred             HHHHHHhhcccchhHHHHHhHHHHHHHHHH-Hhccc----CCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchh
Q 013655          169 AGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTP----ESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWE  243 (439)
Q Consensus       169 ~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (439)
                      |.+.|.+.+..+.+....+.++..+++.++ ++++.    ..|. ...+++.++                .         
T Consensus       166 Pl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~----------------~---------  219 (432)
T PF06963_consen  166 PLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSE----------------S---------  219 (432)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcc----------------c---------
Confidence            999999999889888888777777776654 33321    1110 000000000                0         


Q ss_pred             hhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHH
Q 013655          244 HELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAF  323 (439)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  323 (439)
                       +. +         +++.      +.+      ++.+.....+..++..+.-...|+..++.+.+...+...++++. .+
T Consensus       220 -~~-~---------~~~~------~~~------~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VL  275 (432)
T PF06963_consen  220 -ES-S---------SDEE------SSS------ESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VL  275 (432)
T ss_pred             -cc-c---------cccc------ccc------cccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-Hh
Confidence             00 0         0000      000      00000000000011111112256666665555555555555553 22


Q ss_pred             hhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HH
Q 013655          324 SYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIF----LV  399 (439)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~----~~  399 (439)
                      ++-+   ....|..          ..|.+....+..-.+..+.++.|.++..++.+|+|..+.-..+......+    ..
T Consensus       276 sf~~---lmt~yl~----------~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~  342 (432)
T PF06963_consen  276 SFGG---LMTAYLK----------SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVV  342 (432)
T ss_pred             cCcH---HHHHHHH----------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence            2211   1223332          24577777788889999999999999999999999877766665543332    22


Q ss_pred             HHhhcccc------chhhhHHHHHHhhhhheeeeeeeeccccccC
Q 013655          400 PLLFQQPK------GLTTGLLFGARICITVTFTVVYVYAPEVSHR  438 (439)
Q Consensus       400 ~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~  438 (439)
                      .++...+.      ..++....+..+|.-+.--....+++|..|+
T Consensus       343 ~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~  387 (432)
T PF06963_consen  343 SFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE  387 (432)
T ss_pred             HHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH
Confidence            22222221      2233334444555544445555555665553

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.70  E-value=8.5e-07  Score=87.85  Aligned_cols=133  Identities=13%  Similarity=0.073  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHHHHHHHH----HHhhhhcchhHHHHHHHHHHHHHHHHHhhcch---------HHHHHHHHHHHhhccC
Q 013655           66 ESLITSVVFAGMLVGAYSW----GIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN---------YYLLLFFRCLVGLGLG  132 (439)
Q Consensus        66 ~g~~~~~~~~~~~~~~~~~----g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~~g  132 (439)
                      .+++.++..+...+..++.    +++.+|++..+.+.+|.++.+++.+...+..+         .+.++..+++.|+|.+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5666677776666666666    56666666668889999999999888766544         4678889999999999


Q ss_pred             cc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc----------ccchhHHHHHhHHHHHHHHHH
Q 013655          133 GG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP----------RLGWRWLLGLSAFPSSLLLLL  198 (439)
Q Consensus       133 ~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~----------~~g~~~~~~~~~~~~~~~~~~  198 (439)
                      .. |...+++.+..|++.||+++|++.....+|..++..+......          ..++...|...++.+++..++
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~  474 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVL  474 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            98 8888999999999999999999988888888887777653210          123667777777665544433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.70  E-value=7.8e-08  Score=89.44  Aligned_cols=177  Identities=16%  Similarity=0.028  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHH--------HHH-HHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 013655           29 CVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESL--------ITS-VVFAGMLVGAYSWGIVSDNFGRRKGFLI   99 (439)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~--------~~~-~~~~~~~~~~~~~g~l~dr~G~r~~~~~   99 (439)
                      ..++..+..+|..-...+..+.....+.+..|+.+.....        ... +...++..|-++...++|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            4556667777777777777777788888888776655444        111 1122333355667778999999999999


Q ss_pred             HHHHHHHHHHHHhhcch----HHHHHHHHHHHhhccCcc--hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013655          100 TAIVTSAAGLLSAFAPN----YYLLLFFRCLVGLGLGGG--PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW  173 (439)
Q Consensus       100 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~G~~~g~~--~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~  173 (439)
                      +.+++.+..+..+...|    -..+++...+..+.....  .....+-+|.+|.+.||.+-|+..+.+-+|++++.....
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            99999999988887655    122233333333332222  233345579999999999999999999999999999999


Q ss_pred             Hhhc-----ccchhHHHHHhHHHHHHHHHHHhcccCC
Q 013655          174 LVMP-----RLGWRWLLGLSAFPSSLLLLLYSVTPES  205 (439)
Q Consensus       174 ~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~  205 (439)
                      ++.+     ..|.+..+++.+.+.++..+..+++||+
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEt  500 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPET  500 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecc
Confidence            9988     7789999999999999999988899987

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.69  E-value=8.8e-07  Score=88.26  Aligned_cols=179  Identities=16%  Similarity=0.126  Sum_probs=120.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Q 013655           26 FQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS  105 (439)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  105 (439)
                      .+.+..+.+.+..+.+..+.....++.+.+.+..|.+... .+...+..+...++..++..+.||+|||+.++.+...+.
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~  370 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMS  370 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHH
Confidence            3344444555555666666677777888888888877554 556666677777888888999999999999999999999


Q ss_pred             HHHHHHhhcch--------------HHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHH
Q 013655          106 AAGLLSAFAPN--------------YYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGI  171 (439)
Q Consensus       106 ~~~~~~~~~~~--------------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l  171 (439)
                      ++.++.+....              ......+.++..+..+..++.+.+..|.+|.+.|+++.++....+.+...+-...
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~  450 (513)
T KOG0254|consen  371 ICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFF  450 (513)
T ss_pred             HHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence            88887664311              1122233344455555556777788999999999999999887777766555444


Q ss_pred             HHHhhcccchhHHHHHhHHHHHH-HH-HHHhcccCC
Q 013655          172 AWLVMPRLGWRWLLGLSAFPSSL-LL-LLYSVTPES  205 (439)
Q Consensus       172 ~~~l~~~~g~~~~~~~~~~~~~~-~~-~~~~~~~~~  205 (439)
                      ...+.+..++...|...+..+.+ .. ..++++||+
T Consensus       451 ~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  451 FPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET  486 (513)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence            44444443334444444443333 34 467778998

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.68  E-value=2.3e-07  Score=66.17  Aligned_cols=80  Identities=19%  Similarity=0.179  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHH
Q 013655           41 EAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLL  120 (439)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (439)
                      .++.++.+++.+|.+.++.++|.++.|++.+..++|+.+|++...++.++.++++.+..+.+...+..+.+++.++.+.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            56788999999999999999999999999999999999999999999999888999999999999999999998887654

Note that many members are hypothetical proteins.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.65  E-value=1.8e-07  Score=88.96  Aligned_cols=111  Identities=12%  Similarity=0.073  Sum_probs=82.0

Q ss_pred             HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh--cc--hHHHHHHHHHHHh
Q 013655           53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF--AP--NYYLLLFFRCLVG  128 (439)
Q Consensus        53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~l~G  128 (439)
                      .++.+.+|.++.+.+++.+...+...++.+++|+++||+|+|+.+..+..+.+.+..+..+  .+  +.+...+...+.+
T Consensus       250 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (366)
T TIGR00886       250 MFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALF  329 (366)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            3455678999999999999999999999999999999999998877776666665554443  22  5555555555555


Q ss_pred             hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHH
Q 013655          129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVG  164 (439)
Q Consensus       129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g  164 (439)
                      ++.|.. ....+.+.+..| +++|.++|+.+...++|
T Consensus       330 ~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       330 FFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            555554 445566677766 68999999988877665

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.61  E-value=2.6e-06  Score=79.88  Aligned_cols=131  Identities=20%  Similarity=0.137  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcchh-hHHHHhhhc
Q 013655           67 SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPV-LASWFLEFI  145 (439)
Q Consensus        67 g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~-~~~~~~~~~  145 (439)
                      +.+.-+-.+...+..+.+.+..+|+..+.=+..+.++++++.++.+++++.+.-+++-++.+++.|..-+ ...+ +..+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence            4456666677778888889999998865556666778888999999999999999999999999998843 3344 4455


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHHhHHHHHHHHHHHh-ccc
Q 013655          146 PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG--WRWLLGLSAFPSSLLLLLYS-VTP  203 (439)
Q Consensus       146 ~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~-~~~  203 (439)
                      ++    ...+-+..+.+.++++|+..-..+.+ .|  .|..+++...+.++..+.++ .+|
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~  196 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP  196 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            54    34677888888888888877665555 44  46677776666555544443 444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.58  E-value=8.6e-06  Score=78.84  Aligned_cols=151  Identities=14%  Similarity=0.087  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh-----hcc
Q 013655           42 AMEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA-----FAP  115 (439)
Q Consensus        42 ~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~-----~~~  115 (439)
                      ...........|.+. +.+|.++.+.++.......+..++..+.+++.+|.++++.+.....+..++.++..     ..+
T Consensus       231 ~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~  310 (413)
T PRK15403        231 YIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPH  310 (413)
T ss_pred             HHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            333344444556554 55699999999998888888888888888876555444443222222222222221     123


Q ss_pred             hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHH
Q 013655          116 NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSL  194 (439)
Q Consensus       116 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~  194 (439)
                      +++..++..++.++|.+.. +...... ..-....+|++.++.+.....+..+++...+++.+. +-+..|...+++..+
T Consensus       311 ~~~~~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  388 (413)
T PRK15403        311 VWLWSVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV  388 (413)
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence            3434566777788887776 4444322 122233579999999998888888999999988665 445555554444333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=2.9e-07  Score=84.18  Aligned_cols=156  Identities=12%  Similarity=0.113  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc--hhHHHHHHHHHHHHHHHHHhhcchHHHH
Q 013655           44 EMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG--RRKGFLITAIVTSAAGLLSAFAPNYYLL  120 (439)
Q Consensus        44 ~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (439)
                      .....-+.++. +.|.+..+.-+.|+..--..+.+.++..+.|.++||++  |-.....+.+..+++.....+++++..+
T Consensus       285 ~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L  364 (464)
T KOG3764|consen  285 SLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQL  364 (464)
T ss_pred             hHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHH
Confidence            33344444444 55777755669999999999999999999999999999  5444456666677777778889999999


Q ss_pred             HHHHHHHhhccCcc-hhhHHHHhhhcCC---C---chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHH
Q 013655          121 LFFRCLVGLGLGGG-PVLASWFLEFIPA---P---NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSS  193 (439)
Q Consensus       121 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~---~---~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~  193 (439)
                      ++-++..|++.+.. ...........+.   +   ..|...++...++++|..+||.+++.+.+..|+++...+.++..+
T Consensus       365 ~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~  444 (464)
T KOG3764|consen  365 WVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNL  444 (464)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHH
Confidence            99888888887776 4444444444433   3   567899999999999999999999999999999998888877777


Q ss_pred             HHHHHH
Q 013655          194 LLLLLY  199 (439)
Q Consensus       194 ~~~~~~  199 (439)
                      +...+.
T Consensus       445 iyapvl  450 (464)
T KOG3764|consen  445 IYAPVL  450 (464)
T ss_pred             HHHHHH
Confidence            654443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.46  E-value=7.4e-06  Score=80.85  Aligned_cols=133  Identities=11%  Similarity=0.075  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcchhHH-------HHHHHHHHHHHHHHH-----hhc-----chHHHHHHHHHHHhh
Q 013655           67 SLITSVVFAGMLVGAYSWGIVSDNFGRRKG-------FLITAIVTSAAGLLS-----AFA-----PNYYLLLFFRCLVGL  129 (439)
Q Consensus        67 g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~-------~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~l~G~  129 (439)
                      +++.+...+...+.+++.+++.||+++|+.       +.+|.++.+++.+..     .+.     .+++.++...++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            455666667787889999999999998863       667777766665432     121     356777888899999


Q ss_pred             ccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc----------ccchhHHHHHhHHHHHHHHHH
Q 013655          130 GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP----------RLGWRWLLGLSAFPSSLLLLL  198 (439)
Q Consensus       130 ~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~----------~~g~~~~~~~~~~~~~~~~~~  198 (439)
                      |.+.. ++..+.+.+..|++.+|.++|++.....+|..++..++.....          .-.+...|...++..+++.++
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~  471 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV  471 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999 7778999999999999999999999999999999888865521          112455666666555554444


Q ss_pred             H
Q 013655          199 Y  199 (439)
Q Consensus       199 ~  199 (439)
                      .
T Consensus       472 ~  472 (489)
T PRK10207        472 M  472 (489)
T ss_pred             H
Confidence            3

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.42  E-value=7.5e-10  Score=108.60  Aligned_cols=169  Identities=18%  Similarity=0.265  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh---
Q 013655           36 MGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA---  112 (439)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~---  112 (439)
                      +..+....+......+.+.+.+..+.+..  -.......+...++.+++..+.||+|||+.++.+..+.+++.+...   
T Consensus       260 l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~  337 (451)
T PF00083_consen  260 LQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIF  337 (451)
T ss_pred             ccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33333333334455566777788887776  2223344455556677778999999999999999888887776664   


Q ss_pred             -hcchH-----HHHHHHHHH--HhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhH
Q 013655          113 -FAPNY-----YLLLFFRCL--VGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRW  183 (439)
Q Consensus       113 -~~~~~-----~~~~~~~~l--~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~  183 (439)
                       ..++.     ...++...+  .+++.+..+....+..|.+|.+.|+++.|+......++..+++.+...+.+..+ +..
T Consensus       338 ~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~  417 (451)
T PF00083_consen  338 FLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGV  417 (451)
T ss_pred             ccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             11111     111222222  222333335566788999999999999999999999999999988888877766 444


Q ss_pred             HHHHhHHHHHHHHHHHhcccCCc
Q 013655          184 LLGLSAFPSSLLLLLYSVTPESP  206 (439)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~  206 (439)
                      .+...++..+...+.++++||+.
T Consensus       418 ~~i~~~~~~i~~i~~~~~lpET~  440 (451)
T PF00083_consen  418 FLIFAGVCLIAIIFVYFFLPETK  440 (451)
T ss_pred             chhhHHHHHHHHhheeEEEeeCC
Confidence            44444444444555678889983

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.41  E-value=3.1e-06  Score=59.93  Aligned_cols=69  Identities=20%  Similarity=0.274  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655           36 MGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT  104 (439)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  104 (439)
                      ..+++.........++.|.+.++.|+|+.++|.+.++..+...++.+++|.++||+++++.++....++
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            344555566667777888888899999999999999999999999999999999999988877665543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.40  E-value=3.1e-05  Score=63.07  Aligned_cols=114  Identities=12%  Similarity=0.188  Sum_probs=91.2

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHH
Q 013655           61 LSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLAS  139 (439)
Q Consensus        61 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~  139 (439)
                      +++..--.-.++......+++++.+.+.+++|.|+.++++.+...+-... .+-++.+.++.+-++.|++.+.. .....
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~  112 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGT  112 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence            33434344556667777888899999999999999999999888754444 35667889999999999999999 66668


Q ss_pred             HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013655          140 WFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLV  175 (439)
Q Consensus       140 ~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l  175 (439)
                      ++.+...++.|++..++.-.....+.++|..+.-.+
T Consensus       113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999998888888888877766554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.38  E-value=4.7e-06  Score=79.35  Aligned_cols=84  Identities=11%  Similarity=0.060  Sum_probs=75.7

Q ss_pred             chhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeecccc
Q 013655          356 NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEV  435 (439)
Q Consensus       356 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~  435 (439)
                      -+......-.+.++.-++.+++++|+|+-+++.+++++..+=++.+....++|..+.+-++-|+..+..+....+|++.+
T Consensus       408 fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~v  487 (618)
T KOG3762|consen  408 FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHV  487 (618)
T ss_pred             eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhh
Confidence            36667777788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCC
Q 013655          436 SHRS  439 (439)
Q Consensus       436 ~p~~  439 (439)
                      .|++
T Consensus       488 aPp~  491 (618)
T KOG3762|consen  488 APPG  491 (618)
T ss_pred             CCCc
Confidence            9975

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.36  E-value=3.2e-05  Score=75.28  Aligned_cols=139  Identities=10%  Similarity=0.001  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcch-hHHHHHHHHHHHHHHHHHhhcch---------------------HHHHHHHHH
Q 013655           68 LITSVVFAGMLVGAYSWGIVSDNFGR-RKGFLITAIVTSAAGLLSAFAPN---------------------YYLLLFFRC  125 (439)
Q Consensus        68 ~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~  125 (439)
                      +....+.+...+.+++..++.+|+|+ |++..++.++.+++.....+.++                     .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            33445555556777788889999995 77778888888888777765432                     266777888


Q ss_pred             HHhhccCcc-hhhHHHHhhhcCC--CchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHHhHHHHHHHHHH-H
Q 013655          126 LVGLGLGGG-PVLASWFLEFIPA--PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG--WRWLLGLSAFPSSLLLLL-Y  199 (439)
Q Consensus       126 l~G~~~g~~-~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g--~~~~~~~~~~~~~~~~~~-~  199 (439)
                      +.|+..+.. ...++++++..++  ++.|..+|+.+.+..+.+.+.....+.+.+.+|  -..++.+.++..+++.+. .
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            899998888 7777999999985  556999999999999999999988887655554  455777888888877655 5


Q ss_pred             hcccCCc
Q 013655          200 SVTPESP  206 (439)
Q Consensus       200 ~~~~~~~  206 (439)
                      +.+|+.+
T Consensus       469 ~~~~~~~  475 (477)
T TIGR01301       469 ILLPRPR  475 (477)
T ss_pred             HhCCCCC
Confidence            5667653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.35  E-value=1.4e-06  Score=85.02  Aligned_cols=122  Identities=13%  Similarity=0.029  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHh-hhHHHH
Q 013655          309 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL-GRKLSM  387 (439)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~  387 (439)
                      +..+.+++.-+...+.+|+...+.+.+..+.         .|.+...+......+.+...++.+++|+++||+ |||+++
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~---------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i   79 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQ---------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV   79 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH
Confidence            4445556666677788888888888887431         346777777778888888899999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHhhccc-cchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          388 SSMFFCCCIFLVPLLFQQP-KGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      .++.++.+++.+++....+ .....+...+..++.+...+...++++|.+|++
T Consensus        80 liG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~  132 (493)
T PRK15462         80 MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPT  132 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCC
Confidence            9999998888766654322 122333334444556666677778899999863

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.34  E-value=3.9e-05  Score=76.06  Aligned_cols=144  Identities=17%  Similarity=0.157  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCc---hhhHHHHHHHHHHHHHHHHHHHHhhhhcch-hHHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPAVQ-SLWHLSP---NQESLITSVVFAGMLVGAYSWGIVSDNFGR-RKGFLITAIVTS  105 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~---~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~~~~~~~  105 (439)
                      +....+..+..++..+....+.|... ..++-++   ...++......++..+++.+.|.+..+++| |+.++++.+++.
T Consensus       312 ~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~t  391 (599)
T PF06609_consen  312 FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMT  391 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence            44444445555555555555555543 3455444   356888888899999999999999998886 555567766666


Q ss_pred             HHHHHHhhc--chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013655          106 AAGLLSAFA--PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWL  174 (439)
Q Consensus       106 ~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~  174 (439)
                      ++..+++..  +|....+...++.|++.|.. .+......-..|+++-|.+.|+..+...+|+.+|..+..-
T Consensus       392 a~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  392 AFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            554444433  45555667778999998887 4555555566788999999999999999988888776543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.30  E-value=0.0015  Score=63.85  Aligned_cols=152  Identities=12%  Similarity=0.081  Sum_probs=94.7

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCCchhhHHHHHHHHH-HHHHHHHHHHHhhhhcchhHHH
Q 013655           22 GFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLW---HLSPNQESLITSVVFA-GMLVGAYSWGIVSDNFGRRKGF   97 (439)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~~   97 (439)
                      +..+..+..++.+.+.+++..+.+...    -.+.|.+   ...+..+..+-....+ ...+...+..++++++++++++
T Consensus        17 pi~~~E~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lF   92 (491)
T PF03219_consen   17 PIHRSELKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLF   92 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            344556666666666666666544433    2333332   2245555666554444 4445577899999999999987


Q ss_pred             HHHHHHHHHHHHHHhhc---------ch----------------------HHHHHHHHHHHhhccCcc-h-hhHHHHhhh
Q 013655           98 LITAIVTSAAGLLSAFA---------PN----------------------YYLLLFFRCLVGLGLGGG-P-VLASWFLEF  144 (439)
Q Consensus        98 ~~~~~~~~~~~~~~~~~---------~~----------------------~~~~~~~~~l~G~~~g~~-~-~~~~~~~~~  144 (439)
                      -...........++++.         ++                      .|...+..++.-+-.... . .-+.+.+|.
T Consensus        93 y~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~i  172 (491)
T PF03219_consen   93 YIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEI  172 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66555554444443331         11                      122222222222222222 3 345888999


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655          145 IPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP  177 (439)
Q Consensus       145 ~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~  177 (439)
                      ...++-.+..+++..+.++|.++++.+..++.+
T Consensus       173 tt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  173 TTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PTZ00207 hypothetical protein; Provisional

Probab=98.16  E-value=6e-05  Score=75.11  Aligned_cols=171  Identities=11%  Similarity=-0.091  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCchh--hHHHHHHHHHHHHHHHHHHHHhhhhcc--------hhHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPAVQSLW-HLSPNQ--ESLITSVVFAGMLVGAYSWGIVSDNFG--------RRKGFLI   99 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~--~g~~~~~~~~~~~~~~~~~g~l~dr~G--------~r~~~~~   99 (439)
                      +|++++.+++..........=+.++.+.+ |.+.+.  .....++..++..+|.+..|.+....-        +|+..+.
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~  434 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF  434 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence            34444444444333333333345666777 663322  222788999999999999998872221        1223333


Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHH-HHHHHHhhc
Q 013655          100 TAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILE-AGIAWLVMP  177 (439)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~-~~l~~~l~~  177 (439)
                      ...++.++.+++++.-....+++..++.|++.|.. +.....+.|.+. ++-|+-..+......+|..+- ..+.|.+.|
T Consensus       435 ~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd  513 (591)
T PTZ00207        435 IPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYT  513 (591)
T ss_pred             HHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33335566666555533368899999999999999 777788999999 999999999999999998876 567777764


Q ss_pred             cc----------c---hhHHHHHhHHHHHHHHHHHhcc
Q 013655          178 RL----------G---WRWLLGLSAFPSSLLLLLYSVT  202 (439)
Q Consensus       178 ~~----------g---~~~~~~~~~~~~~~~~~~~~~~  202 (439)
                      .-          |   ++.+|++.+..++++.++...+
T Consensus       514 ~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        514 QQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             HHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence            21          1   7888999888888876664433

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.15  E-value=0.0044  Score=59.17  Aligned_cols=151  Identities=11%  Similarity=0.073  Sum_probs=99.5

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CchhhHHHHHHHHH-HHHHHHHHHHHhhhhcchhHHHH
Q 013655           23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHL---SPNQESLITSVVFA-GMLVGAYSWGIVSDNFGRRKGFL   98 (439)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~~~   98 (439)
                      .++..+..+..+.+.+++..+.+...    -.+.+.+.+   .+..+.++-+...+ +..+..++.+++.++..+++++-
T Consensus        21 i~r~E~~kflpl~Ll~f~I~~ny~~l----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~   96 (509)
T COG3202          21 IRRYELKKFLPLALLFFCILFNYNLL----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFY   96 (509)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHH
Confidence            44555555655555555555544333    345555543   45666777777766 67778889999999999999877


Q ss_pred             HHHHHHHHHHHHHhhc---------ch-----------------------HHHHHHHHHHHhhccCcc-h-hhHHHHhhh
Q 013655           99 ITAIVTSAAGLLSAFA---------PN-----------------------YYLLLFFRCLVGLGLGGG-P-VLASWFLEF  144 (439)
Q Consensus        99 ~~~~~~~~~~~~~~~~---------~~-----------------------~~~~~~~~~l~G~~~g~~-~-~~~~~~~~~  144 (439)
                      ..........+++++.         ++                       .|...+..++.=+-.... . .-+....|.
T Consensus        97 ~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNei  176 (509)
T COG3202          97 IILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEI  176 (509)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666555555431         11                       123333333333322222 2 344778899


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655          145 IPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP  177 (439)
Q Consensus       145 ~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~  177 (439)
                      ...++-.|..++++.+.+++..++..+..++.+
T Consensus       177 tt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         177 TTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             hhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999988866

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.13  E-value=4.3e-05  Score=74.59  Aligned_cols=160  Identities=16%  Similarity=0.066  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh----cchhHHHHHHHHHH
Q 013655           30 VLAYAGMGWISEAMEMMLLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDN----FGRRKGFLITAIVT  104 (439)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~~~~~~~~~  104 (439)
                      .++..++..++.....+...+++|.+.++ .|+|..+.+.+...+.++.+++.+++|+++||    ..+|........+.
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            35556667777777777788888988877 66999999999999999999999999999999    56666666555554


Q ss_pred             HHHH-HHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCc-hhhHHHHHHHHHHHHHHHHHHH-HHHhhcccc
Q 013655          105 SAAG-LLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN-RGFWMVIFQTFWTVGTILEAGI-AWLVMPRLG  180 (439)
Q Consensus       105 ~~~~-~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~i~~~l-~~~l~~~~g  180 (439)
                      .... ......++........+..+.+.+.. +....+..+....+. |-...+....+.+.++.++|.+ .+.....++
T Consensus       354 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~  433 (495)
T KOG2533|consen  354 AIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG  433 (495)
T ss_pred             HHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchh
Confidence            4433 44444443444444333333434444 445566666665444 4444455555556555555444 444455578


Q ss_pred             hhHHHHHhH
Q 013655          181 WRWLLGLSA  189 (439)
Q Consensus       181 ~~~~~~~~~  189 (439)
                      |...|....
T Consensus       434 ~~~~f~~~~  442 (495)
T KOG2533|consen  434 WGAVFYMLV  442 (495)
T ss_pred             hhhHHHHHH
Confidence            888874433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.10  E-value=0.00037  Score=67.42  Aligned_cols=80  Identities=10%  Similarity=0.041  Sum_probs=43.4

Q ss_pred             hhhHHHHhhhhhhHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhh------------ccccchhhhHHHHHHhhhhh
Q 013655          357 YGDVFITSFAEFPGLLLAAAMVDRLGRK-LSMSSMFFCCCIFLVPLLF------------QQPKGLTTGLLFGARICITV  423 (439)
Q Consensus       357 ~~~~~~~~i~~~~g~~~~g~l~dr~grr-~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~~  423 (439)
                      ......+.++..+||.+..+..- -++| +.+.+..+.-.+..-++.+            .++.+..++..+++|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            56677788999999987654311 1122 1222223222222222211            12344556677788887777


Q ss_pred             eeeeeeeecccccc
Q 013655          424 TFTVVYVYAPEVSH  437 (439)
Q Consensus       424 ~~~~~~~~~~e~~p  437 (439)
                      .....+.+.++..+
T Consensus       389 ~~s~~m~~~p~~v~  402 (437)
T TIGR00939       389 LGSLSMCLAPRQVD  402 (437)
T ss_pred             HHHHHHHhcCCCCC
Confidence            66666666666544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.98  E-value=0.00037  Score=69.80  Aligned_cols=151  Identities=19%  Similarity=0.151  Sum_probs=102.1

Q ss_pred             HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHH---HHHHHHHHHhh
Q 013655           53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYY---LLLFFRCLVGL  129 (439)
Q Consensus        53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~  129 (439)
                      +.....+|.+....   ..........+....+...|++|||.....+.++..++.+..++.....   ...+...+..+
T Consensus       342 ~~~~~~lg~~~~~~---~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (521)
T KOG0255|consen  342 SLNVSGLGGNIYLN---FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKF  418 (521)
T ss_pred             hhhhhhcCchHHHH---HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence            33444455544333   3333335555566668999999999999999999999999888775432   34444444444


Q ss_pred             ccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH-HHHHhcccCCch
Q 013655          130 GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESPR  207 (439)
Q Consensus       130 ~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~  207 (439)
                      +.+.. .....+..|..|+..|..+.+.......+|.+++|.+...... ......+.+.+....+. .+..+++||+..
T Consensus       419 ~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  419 FIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence            55544 4557888999999999999999999999999999988866544 22222222334444444 444588898854

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.84  E-value=8.4e-05  Score=70.78  Aligned_cols=125  Identities=14%  Similarity=0.052  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHh-hhHHHHH
Q 013655          310 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL-GRKLSMS  388 (439)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~  388 (439)
                      .++.++..=+.-=++||++...+..|....-    .. ..|+++..+...++.++...-+..+++||++||+ |+|+++.
T Consensus        22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~----~~-gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          22 GLYLIFFVELWERFSYYGMRAILILYLYYQL----GD-GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc----cc-cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            3455555555666777877776666653321    01 1447777786667777777778889999999995 9999999


Q ss_pred             HHHHHHHHHHHHHhhcc--ccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          389 SMFFCCCIFLVPLLFQQ--PKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       389 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      ++.++++++.+.+....  ....+.+.+.+++.+.|..=|...++..|.+|++
T Consensus        97 lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~  149 (498)
T COG3104          97 LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKD  149 (498)
T ss_pred             HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCC
Confidence            99999999999988774  5566777788888999999899999999999874

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.82  E-value=0.0067  Score=60.64  Aligned_cols=155  Identities=16%  Similarity=0.184  Sum_probs=119.9

Q ss_pred             HHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHHHHhhcc----------
Q 013655           47 LLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGLLSAFAP----------  115 (439)
Q Consensus        47 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~----------  115 (439)
                      .....+.++.++++.+...+.-....+.-......+.+++++|-| ||-+++.++.++..++..+..+..          
T Consensus        56 ~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~  135 (571)
T KOG1237|consen   56 LVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC  135 (571)
T ss_pred             chhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence            345667788899999888888888888888888899999999975 898999888888777765443321          


Q ss_pred             ------------h---HHHHHHHHHHHhhccCcc-hhhHHHHhhhcC---C-Cc--hhhHHHHHHHHHHHHHHHHHHHHH
Q 013655          116 ------------N---YYLLLFFRCLVGLGLGGG-PVLASWFLEFIP---A-PN--RGFWMVIFQTFWTVGTILEAGIAW  173 (439)
Q Consensus       116 ------------~---~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~---~-~~--rg~~~~~~~~~~~~g~~i~~~l~~  173 (439)
                                  +   ...+....-+..+|.|+. +...++-+|.++   + ++  +...+.++....++|..++..+..
T Consensus       136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v  215 (571)
T KOG1237|consen  136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV  215 (571)
T ss_pred             cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence                        1   134556666777888988 877788888887   2 22  236778889999999999999999


Q ss_pred             HhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655          174 LVMPRLGWRWLLGLSAFPSSLLLLLYSV  201 (439)
Q Consensus       174 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~  201 (439)
                      +.-++.+|...|.+..+..++++++++.
T Consensus       216 yiq~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  216 YIQDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             hhhhcccceeeccHHHHHHHHHHHHHHc
Confidence            9888999999998888777766655443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.81  E-value=0.0005  Score=66.75  Aligned_cols=122  Identities=12%  Similarity=0.107  Sum_probs=108.6

Q ss_pred             HhhhcCCCchhhHHHHHHHHHHHHHHHHHHH-HhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCc
Q 013655           55 VQSLWHLSPNQESLITSVVFAGMLVGAYSWG-IVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGG  133 (439)
Q Consensus        55 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  133 (439)
                      +...++++..+.+...+...+...+++.+.. .+...+|-|+++.+|++...+.....+++.+.|+.+...++.++....
T Consensus       268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~  347 (463)
T KOG2816|consen  268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIV  347 (463)
T ss_pred             EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcch
Confidence            4456899999999999888888888888777 777788999999999999999999999999999999999888887777


Q ss_pred             chhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013655          134 GPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM  176 (439)
Q Consensus       134 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~  176 (439)
                      .+...+.+..+.+++++|++.++.....++...++|.+-+.+.
T Consensus       348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            7888899999999999999999999999999999998877664

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.79  E-value=0.00026  Score=64.01  Aligned_cols=157  Identities=14%  Similarity=0.129  Sum_probs=110.2

Q ss_pred             HHHHHHh-hhcCCCchhhH-HHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 013655           50 FVGPAVQ-SLWHLSPNQES-LITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLV  127 (439)
Q Consensus        50 ~~~~~~~-~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (439)
                      +..|++. .+.+++..+.. -+.-...-.+.+.-.+.=.+.|....|+++++-.+.......+..+.++.+.+-+.-++.
T Consensus        26 ~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~Fy  105 (433)
T KOG3810|consen   26 YLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFY  105 (433)
T ss_pred             ccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhc
Confidence            3445554 44566665542 122222334455556667789999889998877777777777888888999888888888


Q ss_pred             hhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHHhHHHHHHHHHHHhcccCC
Q 013655          128 GLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG--WRWLLGLSAFPSSLLLLLYSVTPES  205 (439)
Q Consensus       128 G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~  205 (439)
                      |...+.-.+.++++-+.++++++-++.|...+..-.|-..|..++..+...-.  +...=.+......++.++.+++|..
T Consensus       106 G~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v  185 (433)
T KOG3810|consen  106 GPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRV  185 (433)
T ss_pred             ChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCC
Confidence            88777666777889899999999999999999888888888888888765433  3333334444444555666777765


Q ss_pred             c
Q 013655          206 P  206 (439)
Q Consensus       206 ~  206 (439)
                      +
T Consensus       186 ~  186 (433)
T KOG3810|consen  186 K  186 (433)
T ss_pred             c
Confidence            4

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.78  E-value=0.0011  Score=60.83  Aligned_cols=141  Identities=16%  Similarity=0.224  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhh-----hcchhHHHHH-HHH
Q 013655           29 CVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSD-----NFGRRKGFLI-TAI  102 (439)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~G~r~~~~~-~~~  102 (439)
                      .-+..+.+.+..++....... .+|.+.+.-|.|.++.+....++.=.  -.-+++..+.|     |+||||..++ +..
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWvvp~q~  107 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWVVPCQY  107 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence            334455566888888888887 88999988899988887655444322  23678888999     9999987543 333


Q ss_pred             HHHHHHHHHhhc-----------chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Q 013655          103 VTSAAGLLSAFA-----------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAG  170 (439)
Q Consensus       103 ~~~~~~~~~~~~-----------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~  170 (439)
                      +.+..+.+.+..           ++...+....++.-+..+.. .+.-.+.-.+..+++.|.+......+.+.|.+++..
T Consensus       108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~  187 (510)
T KOG3574|consen  108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV  187 (510)
T ss_pred             HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence            334444433332           22333333445555555655 555677777788888888877777777777766655


Q ss_pred             HH
Q 013655          171 IA  172 (439)
Q Consensus       171 l~  172 (439)
                      +.
T Consensus       188 if  189 (510)
T KOG3574|consen  188 VF  189 (510)
T ss_pred             ee
Confidence            43

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.78  E-value=0.00033  Score=64.32  Aligned_cols=122  Identities=16%  Similarity=0.152  Sum_probs=107.0

Q ss_pred             hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc--hhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCc
Q 013655           56 QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG--RRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGG  133 (439)
Q Consensus        56 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  133 (439)
                      ...+|+++.+.|-+.+...++..+.+....+..||..  .+-.+..+..++.-..++...++....+..+..+-.+..+.
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~  368 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS  368 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999987  67777788888777788888888888888888888888777


Q ss_pred             c-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655          134 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP  177 (439)
Q Consensus       134 ~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~  177 (439)
                      . +....++....|.++||..+|+......++-++||.++|.+..
T Consensus       369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            7 6677888999999999999999999999999999999987654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.73  E-value=1.1e-05  Score=64.73  Aligned_cols=79  Identities=10%  Similarity=0.034  Sum_probs=64.7

Q ss_pred             HHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          361 FITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       361 ~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      +...++.+++.++.|++.||+|||+.+..+..+..++.+.+...++.+...+..++.+++.+...+....+..|.+|++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            3455677889999999999999999999888888888777766666666677778888888888888888888888863

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.71  E-value=0.0002  Score=68.34  Aligned_cols=108  Identities=19%  Similarity=0.312  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhc--c-h------HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCC---chhhHHHHHHHHH
Q 013655           95 KGFLITAIVTSAAGLLSAFA--P-N------YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP---NRGFWMVIFQTFW  161 (439)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~--~-~------~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~---~rg~~~~~~~~~~  161 (439)
                      |+++++.++..+|.++..++  + .      .+.++++..+.++|.|+. +...++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56778888888888874433  1 2      367888899999999999 99999999999765   4677788899999


Q ss_pred             HHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcc
Q 013655          162 TVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVT  202 (439)
Q Consensus       162 ~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  202 (439)
                      ++|..+++.+.+++.+++||...|.+.++..+++++.+..-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998888877765543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.63  E-value=0.0011  Score=63.34  Aligned_cols=141  Identities=16%  Similarity=0.180  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCchhhHHHHHHHHHHHHHHHHHHHHhhh-----hcchhHHHHH-HHHHH
Q 013655           33 YAGMGWISEAMEMMLLSFVGPAVQSL--WHLSPNQESLITSVVFAGMLVGAYSWGIVSD-----NFGRRKGFLI-TAIVT  104 (439)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~G~r~~~~~-~~~~~  104 (439)
                      ++.+.++.++...+.....+|.+.++  -+.|.++.|...-+. ..+. .-+++..+.|     |+||||..++ .-.+.
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~-~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLAS-YPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeee-chhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            44566788888777765567888877  688888887543221 1111 1345555555     7899987543 23333


Q ss_pred             HHHHHHHhhcc----------------------h--HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHH
Q 013655          105 SAAGLLSAFAP----------------------N--YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT  159 (439)
Q Consensus       105 ~~~~~~~~~~~----------------------~--~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~  159 (439)
                      ++.++..+..-                      +  ...+....++.=+-.+.. .+.-.+.-....+++++.+......
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence            33333322111                      0  112222332233333444 4455666667788888888877777


Q ss_pred             HHHHHHHHHHHHHHHh
Q 013655          160 FWTVGTILEAGIAWLV  175 (439)
Q Consensus       160 ~~~~g~~i~~~l~~~l  175 (439)
                      +.+.|..++..+.-.+
T Consensus       162 G~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLAL  177 (544)
T ss_pred             HhhhhHHHHHHHHHhh
Confidence            7777777766554443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.59  E-value=9.2e-05  Score=69.65  Aligned_cols=89  Identities=10%  Similarity=-0.165  Sum_probs=80.8

Q ss_pred             CCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeee
Q 013655          351 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV  430 (439)
Q Consensus       351 ~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  430 (439)
                      .+....+++.....+..++..++.|++.||+.|++++.+|..+..++.++-.+..+.|...+.=.+.|+|.....|+...
T Consensus        65 i~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s  144 (493)
T KOG1330|consen   65 ISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPS  144 (493)
T ss_pred             CCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchh
Confidence            56666688999999999999999999999999999999999999999998888888888888888999999999999999


Q ss_pred             eccccccCC
Q 013655          431 YAPEVSHRS  439 (439)
Q Consensus       431 ~~~e~~p~~  439 (439)
                      ++++.||.+
T Consensus       145 ~IaD~f~~~  153 (493)
T KOG1330|consen  145 LIADSFPDD  153 (493)
T ss_pred             HhhhcCcch
Confidence            999999853

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.42  E-value=0.0011  Score=62.45  Aligned_cols=158  Identities=13%  Similarity=0.020  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcch-hHHHHHHHHHHHHHHHH-Hhhc---chHHH
Q 013655           45 MMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR-RKGFLITAIVTSAAGLL-SAFA---PNYYL  119 (439)
Q Consensus        45 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~-~~~~---~~~~~  119 (439)
                      .+.....+......-|.+....|++.....++.++++.+.|.+.||.+. |.+++.......++... ..+.   .+.+.
T Consensus       282 F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~vi  361 (480)
T KOG2563|consen  282 FNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVI  361 (480)
T ss_pred             HHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEe
Confidence            3344444444455567788899999999999999999999999999864 55555555555555222 2221   23344


Q ss_pred             HHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc----hhHHHHHhHHHHHH
Q 013655          120 LLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG----WRWLLGLSAFPSSL  194 (439)
Q Consensus       120 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g----~~~~~~~~~~~~~~  194 (439)
                      +.....+.|++.... |...-+-.|...|..-+.-.|+.+....+-+++-..+.+...+..+    |...-+.....+++
T Consensus       362 v~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l  441 (480)
T KOG2563|consen  362 VFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALL  441 (480)
T ss_pred             hhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHH
Confidence            555556666665555 7666777787777667778888888777777777777777777665    44333444444444


Q ss_pred             HHHHHhcc
Q 013655          195 LLLLYSVT  202 (439)
Q Consensus       195 ~~~~~~~~  202 (439)
                      ..++..++
T Consensus       442 ~~~lva~~  449 (480)
T KOG2563|consen  442 GAILVAFF  449 (480)
T ss_pred             HHHHHhhh
Confidence            44444444

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.30  E-value=0.00056  Score=65.65  Aligned_cols=89  Identities=8%  Similarity=-0.008  Sum_probs=78.6

Q ss_pred             cCCCCCC-chhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeee
Q 013655          349 SGKSRDI-NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTV  427 (439)
Q Consensus       349 ~g~~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  427 (439)
                      .|.+.++ .+...+.+..+-.+..+.+|+++||+|.|+++..+.+...+..+++.+.++...+.++=++.|++.+..+ .
T Consensus        56 lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A  134 (511)
T TIGR00806        56 LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-A  134 (511)
T ss_pred             cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            4477877 6899999999999999999999999999999999999999999999888787778888889999998888 7


Q ss_pred             eeeeccccccC
Q 013655          428 VYVYAPEVSHR  438 (439)
Q Consensus       428 ~~~~~~e~~p~  438 (439)
                      ...++...+|+
T Consensus       135 ~~syI~~WfP~  145 (511)
T TIGR00806       135 YSSYIFSLVPP  145 (511)
T ss_pred             HHHHHHHHCCH
Confidence            88888877775

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.29  E-value=0.0003  Score=71.77  Aligned_cols=91  Identities=10%  Similarity=-0.107  Sum_probs=74.7

Q ss_pred             cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc-----------------------
Q 013655          349 SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ-----------------------  405 (439)
Q Consensus       349 ~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-----------------------  405 (439)
                      .+.+....++..+.+.++..++.++.+++.||.+||+.+.++.++++++.+++.+.+                       
T Consensus        63 F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~  142 (633)
T TIGR00805        63 FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANS  142 (633)
T ss_pred             hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccc
Confidence            346777778899999999999999999999999999999999988888877765431                       


Q ss_pred             ----------------------------ccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          406 ----------------------------PKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       406 ----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                                                  ....+++.-++.|++.+..+++..+++.|.+|++
T Consensus       143 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~  204 (633)
T TIGR00805       143 FLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK  204 (633)
T ss_pred             ccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcc
Confidence                                        0123445678889999999999999999999874

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.28  E-value=0.0096  Score=55.89  Aligned_cols=80  Identities=16%  Similarity=0.132  Sum_probs=46.1

Q ss_pred             hhhHHH-HhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh---------hccccchhhhHHHHHHhhhhheee
Q 013655          357 YGDVFI-TSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL---------FQQPKGLTTGLLFGARICITVTFT  426 (439)
Q Consensus       357 ~~~~~~-~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~  426 (439)
                      -..... +.+...+|.++..+.-++- ||.. .+...+-.+..-++.         ...+.++.+....++|+..|-..+
T Consensus       285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts  362 (406)
T KOG1479|consen  285 LLLVFLSFNVFDLIGSILAALLTWPD-PRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS  362 (406)
T ss_pred             HHHHHHHhHHHHHhhhhhhhcccCCC-Ccee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence            334444 6777788866666644432 3332 222222222221121         234556677778888888888888


Q ss_pred             eeeeeccccccC
Q 013655          427 VVYVYAPEVSHR  438 (439)
Q Consensus       427 ~~~~~~~e~~p~  438 (439)
                      +.+.+.++-.|+
T Consensus       363 l~m~~aPk~v~~  374 (406)
T KOG1479|consen  363 LIMMYAPKQVKP  374 (406)
T ss_pred             heehhcCCCCCh
Confidence            888888877765

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.16  E-value=0.018  Score=55.42  Aligned_cols=146  Identities=16%  Similarity=0.086  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHH
Q 013655           28 LCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAA  107 (439)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~  107 (439)
                      ....+...++..+.++........+..+....|+++..+|..-+...+....+.+...++.+|+|..|.-+++......+
T Consensus       257 ~q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~  336 (432)
T PF06963_consen  257 RQPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVC  336 (432)
T ss_pred             hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            33444555555555554444555566666667999999999999999999999999999999999888877766654433


Q ss_pred             HHHHh---hc---c----hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013655          108 GLLSA---FA---P----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW  173 (439)
Q Consensus       108 ~~~~~---~~---~----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~  173 (439)
                      ..+..   +.   +    +...++.+..+.-+|.=.. .....++.|..|+++||...|.-....++-.++...++-
T Consensus       337 L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  337 LALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             HHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            33221   22   1    2333444444444444444 455577789999999999999988888887776655543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=97.03  E-value=0.071  Score=53.05  Aligned_cols=139  Identities=19%  Similarity=0.130  Sum_probs=79.1

Q ss_pred             HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH-HHHH-HHHHHHHH----hhcchH-HHHHHHHHH
Q 013655           54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLI-TAIV-TSAAGLLS----AFAPNY-YLLLFFRCL  126 (439)
Q Consensus        54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~-~~~~-~~~~~~~~----~~~~~~-~~~~~~~~l  126 (439)
                      .+.--+|-+....+.+.+++..|..+|+.+++++.++.-++....- +..+ .+++..+.    .+.... ..++...++
T Consensus        40 ~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  119 (521)
T PRK03612         40 LASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL  119 (521)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444568889999999999999999999999988744333322111 1111 11111111    111111 122333445


Q ss_pred             HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-cccchhHHHHHhHHHHH
Q 013655          127 VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-PRLGWRWLLGLSAFPSS  193 (439)
Q Consensus       127 ~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~-~~~g~~~~~~~~~~~~~  193 (439)
                      .++..|+. |....+..+. ..++-|...|-......+|+++|.++.+++. ...|-....++.+.+.+
T Consensus       120 ~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~  187 (521)
T PRK03612        120 IGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNL  187 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            56666666 4444433332 2223567788888889999999998877654 46775544444444333

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.95  E-value=0.0047  Score=43.71  Aligned_cols=46  Identities=15%  Similarity=0.018  Sum_probs=39.4

Q ss_pred             cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 013655          349 SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCC  394 (439)
Q Consensus       349 ~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  394 (439)
                      .|.+..+.+....+..+..+++.+++|+++||.++++.......++
T Consensus        30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            5588888899999999999999999999999999888776655443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.89  E-value=0.0058  Score=59.42  Aligned_cols=145  Identities=18%  Similarity=0.197  Sum_probs=101.2

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh-c---------chHHHHHHHHHHHhhc
Q 013655           61 LSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF-A---------PNYYLLLFFRCLVGLG  130 (439)
Q Consensus        61 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~G~~  130 (439)
                      +|+...|.+..+..++..++..+.....-+..-|+++..+.++.++..+.-.. .         ++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            88888999988888888899888888877888888888777776655543221 1         1222222333444444


Q ss_pred             cCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch--------hHHHHHhHHHHHHHHHHHhc
Q 013655          131 LGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW--------RWLLGLSAFPSSLLLLLYSV  201 (439)
Q Consensus       131 ~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~--------~~~~~~~~~~~~~~~~~~~~  201 (439)
                      .+.. .+...+++|..|+...|..+++.....++|..++..++..+.+.++.        ....++..+..++.+.+..+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            4444 45557789999999999999999999999999999999988766552        22334444555555555666


Q ss_pred             ccCC
Q 013655          202 TPES  205 (439)
Q Consensus       202 ~~~~  205 (439)
                      +|+.
T Consensus       412 Lp~~  415 (433)
T PF03092_consen  412 LPPQ  415 (433)
T ss_pred             cCCC
Confidence            6664

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.68  E-value=0.0047  Score=59.60  Aligned_cols=177  Identities=7%  Similarity=0.022  Sum_probs=105.9

Q ss_pred             hCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCchhhHHHHHHH----HHHHHHHHHHHHHhh-hhcchh
Q 013655           21 MGFGKFQLCVLAYAGMGWISEAMEMMLLSFV-GPAVQSLWHLSPNQESLITSVV----FAGMLVGAYSWGIVS-DNFGRR   94 (439)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~~~~----~~~~~~~~~~~g~l~-dr~G~r   94 (439)
                      ....+..|...+.+.+..+...+........ .+.....++++.++.-...+..    .+......+..+... -++.+|
T Consensus       254 ~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r  333 (488)
T KOG2325|consen  254 VKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKR  333 (488)
T ss_pred             hccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            3455666776666666666666555553333 3344456777776664444333    332222222222222 233446


Q ss_pred             HHHHHHHHHHHHHHHHHhh----c---------------------------chHHHHHHHH-HHHhhccCcc-hhhHHHH
Q 013655           95 KGFLITAIVTSAAGLLSAF----A---------------------------PNYYLLLFFR-CLVGLGLGGG-PVLASWF  141 (439)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~----~---------------------------~~~~~~~~~~-~l~G~~~g~~-~~~~~~~  141 (439)
                      +.+..+.++......+..+    .                           .+.+.+++.+ ++.|.+.-.. ....++.
T Consensus       334 ~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tly  413 (488)
T KOG2325|consen  334 RIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLY  413 (488)
T ss_pred             eeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHH
Confidence            6666554444333332211    0                           0112233333 3455555555 4566888


Q ss_pred             hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHH
Q 013655          142 LEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL  197 (439)
Q Consensus       142 ~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~  197 (439)
                      ++...+++++.+.+++......+..++|.+........|.|..+.+.+...++...
T Consensus       414 SkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~  469 (488)
T KOG2325|consen  414 SKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA  469 (488)
T ss_pred             HHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888988887776655555433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.60  E-value=0.053  Score=51.38  Aligned_cols=109  Identities=14%  Similarity=0.172  Sum_probs=76.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH--HH---HHHHhhcchHHHHHHHHHHHhhccCcc-hh
Q 013655           63 PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS--AA---GLLSAFAPNYYLLLFFRCLVGLGLGGG-PV  136 (439)
Q Consensus        63 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~  136 (439)
                      .++..+....+.+|-.++.--...+  |+  |+..+.+.+-..  +.   ....-+.++.|..++..+..|+..|.. ..
T Consensus       280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN  355 (402)
T PF02487_consen  280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN  355 (402)
T ss_pred             HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence            4566677777777766665433221  33  444444333222  11   222334678999999999999998888 55


Q ss_pred             hHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013655          137 LASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLV  175 (439)
Q Consensus       137 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l  175 (439)
                      ....+.+..++++|..++|....+-++|..++..++-++
T Consensus       356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            567778888999999999999999999999988887665

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.48  E-value=0.0037  Score=55.32  Aligned_cols=73  Identities=15%  Similarity=0.071  Sum_probs=56.2

Q ss_pred             HHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 013655          320 GNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV  399 (439)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~  399 (439)
                      ......|....+.|.+...          .+.++.+.........++..+| ++.|.+.||+|.+.++.++.+...++..
T Consensus        13 ~~~Gt~Y~Fs~yS~~Lk~~----------l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~   81 (250)
T PF06813_consen   13 LCSGTTYTFSAYSPQLKSR----------LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYG   81 (250)
T ss_pred             HhcCcccchhhhhHHHHHH----------hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            3444556666777777754          3377777777777777777775 8889999999999999999999999988


Q ss_pred             HHhh
Q 013655          400 PLLF  403 (439)
Q Consensus       400 ~~~~  403 (439)
                      .++.
T Consensus        82 ~~~l   85 (250)
T PF06813_consen   82 LLWL   85 (250)
T ss_pred             HHHH
Confidence            7764

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=96.45  E-value=0.64  Score=42.44  Aligned_cols=70  Identities=9%  Similarity=0.168  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhh
Q 013655           73 VFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLE  143 (439)
Q Consensus        73 ~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~  143 (439)
                      ..+..+.++++.+.+..++|-|.++.++......... .-+-+.+..++..-...|++.+.. ....+++++
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~  137 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTP  137 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecH
Confidence            3445556677777999999999999888776554332 223467788888999999998876 333344443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.31  Score=47.16  Aligned_cols=106  Identities=22%  Similarity=0.325  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhh---cchhHHHHHHHHHHHHHHHHHhhc------------------chHHHHHHHH
Q 013655           66 ESLITSVVFAGMLVGAYSWGIVSDN---FGRRKGFLITAIVTSAAGLLSAFA------------------PNYYLLLFFR  124 (439)
Q Consensus        66 ~g~~~~~~~~~~~~~~~~~g~l~dr---~G~r~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~  124 (439)
                      .++..-...++..+++.+.+.+.+|   +||++.+.++..+..++.++....                  +++....+..
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            3444445566666667777777765   688898888888877777665432                  2356777888


Q ss_pred             HHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013655          125 CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA  172 (439)
Q Consensus       125 ~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~  172 (439)
                      ++.|++.+.. ...+..+.... +++|..+.++.-.-..++..++-...
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~  408 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS  408 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999988 66667777777 67778888887777666665544333

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.22  E-value=0.056  Score=49.95  Aligned_cols=77  Identities=12%  Similarity=-0.067  Sum_probs=56.8

Q ss_pred             cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheee
Q 013655          349 SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFT  426 (439)
Q Consensus       349 ~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  426 (439)
                      .|++..+.........+.+.+...+.|.+.||+|||+..+...++..++++.- ..++...+++.=++.|+..+..++
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTSLLfS  140 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATSLLFS  140 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHH
Confidence            34777777777777778888888899999999999999888888888887643 334555555555666666555443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=95.88  E-value=0.031  Score=49.06  Aligned_cols=55  Identities=16%  Similarity=0.295  Sum_probs=35.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHh---h--cccchhHHHHHhHHHHHHHHHHHhcc
Q 013655          148 PNRGFWMVIFQTFWTVGTILEAGIAWLV---M--PRLGWRWLLGLSAFPSSLLLLLYSVT  202 (439)
Q Consensus       148 ~~rg~~~~~~~~~~~~g~~i~~~l~~~l---~--~~~g~~~~~~~~~~~~~~~~~~~~~~  202 (439)
                      ++|+..+.+...+.++|.++.-..--.-   .  -.-.|+..+.+.+++.++-++++..+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5566667777777888877654332111   1  12359999998888887777766555

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=95.15  E-value=0.22  Score=40.65  Aligned_cols=83  Identities=17%  Similarity=0.090  Sum_probs=61.6

Q ss_pred             CCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeec
Q 013655          353 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYA  432 (439)
Q Consensus       353 ~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  432 (439)
                      .........+......++.++.+.+.+++|.|+.++++.+...+..+... .++.+..+....+.|++.+..+..--.++
T Consensus        36 ~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~~~~~~l~~~s~l~G~~~a~lW~aqg~yl  114 (156)
T PF05978_consen   36 AGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-YPNSYTLYPASALLGFGAALLWTAQGTYL  114 (156)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhhHHhhHhhhHHH
Confidence            33445666666777788889999999999999999999998887666654 34456667777888888887776655555


Q ss_pred             cccc
Q 013655          433 PEVS  436 (439)
Q Consensus       433 ~e~~  436 (439)
                      .+..
T Consensus       115 t~~s  118 (156)
T PF05978_consen  115 TSYS  118 (156)
T ss_pred             HHcC
Confidence            5443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.11  E-value=0.11  Score=37.31  Aligned_cols=73  Identities=10%  Similarity=0.021  Sum_probs=58.8

Q ss_pred             hHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc
Q 013655          326 YGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ  405 (439)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  405 (439)
                      +..+...|...++          .+.+..+++...+...++-.+|.+...++.++..++..+..+.+.+.+..+.+.+.+
T Consensus         9 FayTplLP~M~~~----------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    9 FAYTPLLPLMQAD----------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HHHHhHhHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444456666544          448888889999999999999999999999998888889999999999888887766


Q ss_pred             ccc
Q 013655          406 PKG  408 (439)
Q Consensus       406 ~~~  408 (439)
                      +.+
T Consensus        79 ~~~   81 (85)
T PF06779_consen   79 SFW   81 (85)
T ss_pred             chH
Confidence            654

Note that many members are hypothetical proteins.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=94.01  E-value=0.21  Score=44.98  Aligned_cols=133  Identities=11%  Similarity=0.034  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhc
Q 013655           66 ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFI  145 (439)
Q Consensus        66 ~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~  145 (439)
                      .|.+.-+-.+...+..+.+....||+---.-+.+..++.+.+.++.+++++.++-+.+..+..++.|..-+..--++..+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y  143 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY  143 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence            35555555666677777888889987543335556677888899999999999999999999888887744433333333


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHhcc
Q 013655          146 PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP--RLGWRWLLGLSAFPSSLLLLLYSVT  202 (439)
Q Consensus       146 ~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~  202 (439)
                      ++.    ..+-+..+.+.++++|..--..+.+  ...-|...++...+.++....++++
T Consensus       144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l  198 (409)
T KOG3880|consen  144 PSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL  198 (409)
T ss_pred             CCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence            332    2333444444445555433333333  3456777776665555544444443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.74  E-value=1.5  Score=41.88  Aligned_cols=99  Identities=9%  Similarity=-0.033  Sum_probs=73.6

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhH
Q 013655           62 SPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK--GFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLA  138 (439)
Q Consensus        62 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~  138 (439)
                      +..--|.+-++..+.++++.+..|++..++.+-.  .+....++.+...+++++.++.|..+++.++.+...... +...
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~  362 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS  362 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444588888888899999999999977776643  334445556677778888999999999998887776666 6666


Q ss_pred             HHHhhhcCCCchhhHHHHHHHH
Q 013655          139 SWFLEFIPAPNRGFWMVIFQTF  160 (439)
Q Consensus       139 ~~~~~~~~~~~rg~~~~~~~~~  160 (439)
                      .-++.....++-|..+|+....
T Consensus       363 ~qIA~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  363 FQIAKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHHHHhccccceeeeeeeHHHH
Confidence            6677777777777777775543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=93.61  E-value=0.02  Score=57.19  Aligned_cols=149  Identities=18%  Similarity=0.154  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHH-HHHHHHHHHHHhhhhcc--hhHHHHHHHHHHH
Q 013655           30 VLAYAGMGWISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFA-GMLVGAYSWGIVSDNFG--RRKGFLITAIVTS  105 (439)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~G--~r~~~~~~~~~~~  105 (439)
                      ++....++.....+.......+.| ++..+|+.++++++++.++..+ +.++|.+++|++..|+.  .|..+....+...
T Consensus       306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~  385 (539)
T PF03137_consen  306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI  385 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence            444555555555555544455554 6667899999999999877666 77788999999999985  3444433333332


Q ss_pred             HHHHH---Hhh-----------cch----------------------------------------HHHHHHHHHHHhhcc
Q 013655          106 AAGLL---SAF-----------APN----------------------------------------YYLLLFFRCLVGLGL  131 (439)
Q Consensus       106 ~~~~~---~~~-----------~~~----------------------------------------~~~~~~~~~l~G~~~  131 (439)
                      ++.++   ..+           ...                                        +..+++..++.-+..
T Consensus       386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~  465 (539)
T PF03137_consen  386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT  465 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence            22221   000           000                                        112223333333333


Q ss_pred             Ccc-hhhHHHHhhhcCCCchhhHHHHHHH-HHHHHHHHHHHHHHHhhcc
Q 013655          132 GGG-PVLASWFLEFIPAPNRGFWMVIFQT-FWTVGTILEAGIAWLVMPR  178 (439)
Q Consensus       132 g~~-~~~~~~~~~~~~~~~rg~~~~~~~~-~~~~g~~i~~~l~~~l~~~  178 (439)
                      +.. .+....+-+.+++++|+.++|+... ..-+|.+-+|++.|.+.|.
T Consensus       466 ~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  466 FMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -------------------------------------------------
T ss_pred             HhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            333 3344555688999999999999654 4556778899999988874

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=93.56  E-value=0.17  Score=51.70  Aligned_cols=87  Identities=13%  Similarity=-0.022  Sum_probs=60.7

Q ss_pred             CCCCCchhhHHHHhhhhhhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhcccc--------chhhhHHHHHHhhh
Q 013655          351 KSRDINYGDVFITSFAEFPGLLLAAAMVDR-LGRKLSMSSMFFCCCIFLVPLLFQQPK--------GLTTGLLFGARICI  421 (439)
Q Consensus       351 ~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~  421 (439)
                      .+...+......+....-+..+++|++.|+ +||++++.++.++..++.+++.+....        ...+..+.+..+|.
T Consensus        20 ~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~   99 (654)
T TIGR00926        20 FSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGT   99 (654)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhc
Confidence            444455445555555566677888999996 699999999999888887776653211        12445566777788


Q ss_pred             hheeeeeeeecccccc
Q 013655          422 TVTFTVVYVYAPEVSH  437 (439)
Q Consensus       422 ~~~~~~~~~~~~e~~p  437 (439)
                      ++.-|...+...+.++
T Consensus       100 GgiKp~vsaf~gdqf~  115 (654)
T TIGR00926       100 GGIKPCVSAFGGDQFE  115 (654)
T ss_pred             cccccCchhhhHhhcC
Confidence            8888888888777665

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.11  E-value=0.8  Score=44.53  Aligned_cols=107  Identities=14%  Similarity=0.053  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcchh-HHHHHHHHH---HHHHHHHHhh---------cchHHHHHHHHHHHhhccCc
Q 013655           67 SLITSVVFAGMLVGAYSWGIVSDNFGRR-KGFLITAIV---TSAAGLLSAF---------APNYYLLLFFRCLVGLGLGG  133 (439)
Q Consensus        67 g~~~~~~~~~~~~~~~~~g~l~dr~G~r-~~~~~~~~~---~~~~~~~~~~---------~~~~~~~~~~~~l~G~~~g~  133 (439)
                      -.+...+.++-.+|..+..+.. .-++| +.+.+..+.   .....+++..         .++-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4566677788888777654421 11222 123332322   2222222221         23556677778999999998


Q ss_pred             c-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013655          134 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWL  174 (439)
Q Consensus       134 ~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~  174 (439)
                      . .....+..+..++++|..+..+...+..+|..+|..++-.
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8 6666777888888999988888888888888888776543

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=91.97  E-value=0.028  Score=51.99  Aligned_cols=79  Identities=14%  Similarity=0.080  Sum_probs=2.8

Q ss_pred             hhHHHHhhhhhhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhh-------------ccccchhhhHHHHHHhhhhh
Q 013655          358 GDVFITSFAEFPGLLLAAAMVDRL-GRKLSMSSMFFCCCIFLVPLLF-------------QQPKGLTTGLLFGARICITV  423 (439)
Q Consensus       358 ~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~g~~~~~  423 (439)
                      .....+.++..+|+.+.++..-+. .+|++. +..+.-.+..-++..             .++.+..++..+++|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            456678899999999988753221 234433 222222222211111             12334555667777777777


Q ss_pred             eeeeeeeecccccc
Q 013655          424 TFTVVYVYAPEVSH  437 (439)
Q Consensus       424 ~~~~~~~~~~e~~p  437 (439)
                      ...+.+.+.++..+
T Consensus       265 l~tl~m~~~p~~v~  278 (309)
T PF01733_consen  265 LSTLAMMYAPKSVS  278 (309)
T ss_dssp             --HHHH--------
T ss_pred             hhhceeeeCCCcCC
Confidence            66666666666554

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=89.69  E-value=0.29  Score=44.35  Aligned_cols=83  Identities=16%  Similarity=-0.039  Sum_probs=56.0

Q ss_pred             chhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc--cchhhhHHHHHHhhhhheeeeeeeecc
Q 013655          356 NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP--KGLTTGLLFGARICITVTFTVVYVYAP  433 (439)
Q Consensus       356 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~  433 (439)
                      .........+...++.++.|.+.||.|||+.+..+.....+..+...+..+  .+...+.....|++.+...+....+..
T Consensus        41 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  120 (338)
T COG0477          41 YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLS  120 (338)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            467777777788888899999999999997777776553444333333333  333334444467777777777777777


Q ss_pred             ccccC
Q 013655          434 EVSHR  438 (439)
Q Consensus       434 e~~p~  438 (439)
                      |.+|.
T Consensus       121 ~~~~~  125 (338)
T COG0477         121 EWFPE  125 (338)
T ss_pred             HhcCc
Confidence            77763

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=89.38  E-value=17  Score=34.74  Aligned_cols=14  Identities=14%  Similarity=0.173  Sum_probs=7.2

Q ss_pred             HHHHHHHHHhhhhc
Q 013655           78 LVGAYSWGIVSDNF   91 (439)
Q Consensus        78 ~~~~~~~g~l~dr~   91 (439)
                      .+.....|++..|+
T Consensus         9 i~~ii~~G~~~~~~   22 (385)
T PF03547_consen    9 IFLIILLGYLLGRF   22 (385)
T ss_pred             HHHHHHHHHHHHHh
Confidence            34444555665554

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=89.26  E-value=4.1  Score=37.80  Aligned_cols=128  Identities=11%  Similarity=-0.001  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcchh--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhh
Q 013655           67 SLITSVVFAGMLVGAYSWGIVSDNFGRR--KGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLE  143 (439)
Q Consensus        67 g~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~  143 (439)
                      |..-.+..+.++++.+..|.+.-++.|.  -.+.++.+..+...+++..+.++|..+++.++.+...... ++...-+++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~  353 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR  353 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence            5555666777888889999998877765  3455566666777777888889999999988888877777 677777888


Q ss_pred             hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-----------hhHHHHHhHHHHHHHHH
Q 013655          144 FIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-----------WRWLLGLSAFPSSLLLL  197 (439)
Q Consensus       144 ~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-----------~~~~~~~~~~~~~~~~~  197 (439)
                      ....+.-|..+|+.....-   ++-.++.-.+.|..|           +..-|.+.+++.++...
T Consensus       354 nL~~e~~gLvFGiNTFvAl---~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~  415 (433)
T KOG3810|consen  354 NLSSELFGLVFGINTFVAL---ILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFG  415 (433)
T ss_pred             hhhhhhheeeeehHHHHHH---HHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHH
Confidence            8888888888887655322   233333333444322           23346666666666544

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=88.67  E-value=2.2  Score=40.95  Aligned_cols=113  Identities=16%  Similarity=0.053  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhh--
Q 013655           68 LITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEF--  144 (439)
Q Consensus        68 ~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~--  144 (439)
                      |-..++.+...+.+....++.+|+|-|+.+..+.....++..+....++.+.....+-..|+-.+.. .+.+..++++  
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~  415 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI  415 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence            3445667777788999999999999766666666656666666666777777777777777544433 2222222111  


Q ss_pred             -------------------cCC--CchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655          145 -------------------IPA--PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG  180 (439)
Q Consensus       145 -------------------~~~--~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g  180 (439)
                                         ..+  ..+|...|+.++...+.+++.....|.+.+.+|
T Consensus       416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G  472 (498)
T KOG0637|consen  416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG  472 (498)
T ss_pred             hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence                               111  224666677888888888877777777777665

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=88.47  E-value=5.5  Score=35.56  Aligned_cols=128  Identities=17%  Similarity=0.151  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhcchh--HHHHHHHHHHHHHHHHHhh----cc---hHHHHHHHHHHHhhccCcc-h
Q 013655           66 ESLITSVVFAGMLVGAYSWGIVSDNFGRR--KGFLITAIVTSAAGLLSAF----AP---NYYLLLFFRCLVGLGLGGG-P  135 (439)
Q Consensus        66 ~g~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~l~G~~~g~~-~  135 (439)
                      -|.+.+.+.+..++|+-+..++..|-.+|  ..+.+..++.++...+..+    +|   +...-+++..+.-.+.|.. |
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            48899999999999999998888876654  3455555554444443322    22   2333455666666778888 7


Q ss_pred             hhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh--c--ccchhHHHHHhHHHHHHHHH
Q 013655          136 VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM--P--RLGWRWLLGLSAFPSSLLLL  197 (439)
Q Consensus       136 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~--~--~~g~~~~~~~~~~~~~~~~~  197 (439)
                      ..+.+-.++.|++.|...+.++..=.++-..+    +-+..  +  ..+-|..|-++.+...++.+
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvCl----vLynlh~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCL----VLYNLHVDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhh----hheecccccCccccchhhhhhHHHHHHHHH
Confidence            77788889999999988877755433332211    11111  1  12356677777666555533

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=86.18  E-value=37  Score=33.51  Aligned_cols=71  Identities=17%  Similarity=0.110  Sum_probs=51.4

Q ss_pred             HHHhhccCcchhhH-HHHhhhcCC-CchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655          125 CLVGLGLGGGPVLA-SWFLEFIPA-PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL  195 (439)
Q Consensus       125 ~l~G~~~g~~~~~~-~~~~~~~~~-~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~  195 (439)
                      ++.|+........+ ..+.+.+|. ++|...+|-+....++..++...+.+.+.+.+||.....+.-+..++.
T Consensus       274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit  346 (472)
T TIGR00769       274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT  346 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            34455555553333 566677664 468889999999888888777778899999999998887776665553

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=85.02  E-value=22  Score=31.39  Aligned_cols=37  Identities=5%  Similarity=-0.052  Sum_probs=23.3

Q ss_pred             HHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 013655          361 FITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIF  397 (439)
Q Consensus       361 ~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~  397 (439)
                      ..-.++..+..+.+-+++.|+..|.+.+.+..+..+.
T Consensus       247 iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F  283 (294)
T KOG2881|consen  247 IGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIF  283 (294)
T ss_pred             HHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence            3344555555566667888888887766665555444

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=81.58  E-value=0.52  Score=43.62  Aligned_cols=106  Identities=11%  Similarity=0.105  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHH---HHHHh----------hcchHHHHHHHHHHHhhccCc
Q 013655           68 LITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAA---GLLSA----------FAPNYYLLLFFRCLVGLGLGG  133 (439)
Q Consensus        68 ~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~~~~l~G~~~g~  133 (439)
                      .+...+.++-.+|..+.++..=+. .+|+..+ ..+.-.+.   .+++.          +.++-+..++..++.|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            356678888889988877643211 2444333 32222221   12221          123445667778899999998


Q ss_pred             c-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013655          134 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWL  174 (439)
Q Consensus       134 ~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~  174 (439)
                      . .....+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             --HHHH------------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8 6777888888988999888888888888887777666543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=80.98  E-value=49  Score=30.99  Aligned_cols=85  Identities=26%  Similarity=0.244  Sum_probs=55.3

Q ss_pred             cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHH----HHHHHHH---HHHHHHHhh--cchHHHHHHHHHHHhh
Q 013655           59 WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGF----LITAIVT---SAAGLLSAF--APNYYLLLFFRCLVGL  129 (439)
Q Consensus        59 ~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~----~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~l~G~  129 (439)
                      .|-+..+.+++.+.+.....+|+...-++.|.--.-+.+    ++|++.-   .+..+.+++  .++-+.++++.++.|.
T Consensus        38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~  117 (508)
T COG4262          38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV  117 (508)
T ss_pred             cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            466778889999999999999988888877754332222    1222211   111112222  3466788888899999


Q ss_pred             ccCcc-hhhHHHHhh
Q 013655          130 GLGGG-PVLASWFLE  143 (439)
Q Consensus       130 ~~g~~-~~~~~~~~~  143 (439)
                      -.|.- |..+.++..
T Consensus       118 LVG~EiPL~mrml~~  132 (508)
T COG4262         118 LVGAEIPLLMRMLQR  132 (508)
T ss_pred             HHhcchHHHHHHHHH
Confidence            99988 777776655

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=80.49  E-value=64  Score=32.03  Aligned_cols=72  Identities=17%  Similarity=0.200  Sum_probs=49.2

Q ss_pred             HHHhhccCcchhhH-HHHhhhcCC-CchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHH
Q 013655          125 CLVGLGLGGGPVLA-SWFLEFIPA-PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL  196 (439)
Q Consensus       125 ~l~G~~~g~~~~~~-~~~~~~~~~-~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~  196 (439)
                      +..|+.....-..+ ..+.+.+|. +++...+|-++...++-..+...+++.+.+.+||+....+.-+..++..
T Consensus       290 i~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~  363 (491)
T PF03219_consen  290 IAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG  363 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence            34455555553333 556666665 4467778888888888777777888999999999998877655555443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	439
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-14
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	2e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 29/174 (16%), Positives = 49/174 (28%), Gaps = 19/174 (10%)

Query: 48  LSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAA 107
            +   P +      S        S +        +  G VSD    R       I+ +A 
Sbjct: 47  FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 105

Query: 108 GLLSAFAP----NYYLLLFFRCLVGLGLGGGP-----VLASWFLEFIPAPNRGFWMVIFQ 158
            L   F P    +  ++     L G   G G       +  W+        RG  + ++ 
Sbjct: 106 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----SQKERGGIVSVWN 161

Query: 159 TFWTVGTILEAGIAWLVMPRL-GWRWLL----GLSAFPSSLLLLLYSVTPESPR 207
               VG  +   +  L M     W   L      +   +     +   TP+S  
Sbjct: 162 CAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCG 215

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 42  AMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITA 101
           A  + + +     +    ++       +         V    +G +SD  GRR   L+  
Sbjct: 15  AQTIYIPAI--ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM 72

Query: 102 IVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLA 138
            +   A L++    +  +L+    + G+G G G V+A
Sbjct: 73  SIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMA 109

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 77/534 (14%), Positives = 137/534 (25%), Gaps = 180/534 (33%)

Query: 5   SDDEKQTYT---VDEAIVTMGFGKFQLCVLAYAGMGWISEAM-EMMLLSFVGPAVQ---- 56
            D  K   +   +D  I+           L      W   +  E M+  FV   ++    
Sbjct: 39  QDMPKSILSKEEIDH-IIMSKDAVSGTLRLF-----WTLLSKQEEMVQKFVEEVLRINYK 92

Query: 57  ---SLWHLSPNQESLITSVVFAGMLVGAYSWG--IVSDNFGRRKGFLITAIVTSAAGLLS 111
              S       Q S++T  ++       Y+        N  R +      +  +    L 
Sbjct: 93  FLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQVFAKYNVSRLQ--PYLKLRQA----LL 145

Query: 112 AFAPNYYLLLFFRCLVGLGLGG-G-PVLASWFLEFIP----APNRGFW------------ 153
              P   +L+        G+ G G   +A               + FW            
Sbjct: 146 ELRPAKNVLID-------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 154 MVIFQTFWT-VGTILEAGIAWLVMPRLGWRW-------LLGLSAFPSSLLLL-------- 197
           + + Q     +     +        +L           LL    + + LL+L        
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 198 ----------L-----YSVT----PESPRYLCL----KGRT-AEARHVLEKIAKINGTKL 233
                     L       VT      +  ++ L       T  E + +L K        L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 234 PS-------------GNLVSD-------WEHELQNK--SLLSSSSNEDDTTPKEMAR--- 268
           P                 + D       W+H   +K  +++ SS N  +  P E  +   
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFD 376

Query: 269 -----DEDS-ISEA------KEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLL-W 315
                   + I          ++   D    +                 +L K +L+   
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN----------------KLHKYSLVEKQ 420

Query: 316 LVFFGNAFSYYGLVL-LTTELNNGQ---NKCVSNELQSGKSRD-----INYGDVFITSF- 365
                +  S   + L L  +L N        V +     K+ D       Y D +  S  
Sbjct: 421 --PKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 366 -------------AEFPGLLLAAAMVD-R-LGRKLSMSSMFFCCCIFLVPLLFQ 404
                          F  + L     D R L +K+   S  +     ++  L Q
Sbjct: 478 GHHLKNIEHPERMTLFRMVFL-----DFRFLEQKIRHDSTAWNASGSILNTLQQ 526

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 47  LLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA 106
           L   + P  Q  + L+  Q  LI S  + G  +     GI+      + G +    + + 
Sbjct: 44  LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103

Query: 107 AGLL---SAFAPNYYLLLFFRCLVGLGLG 132
              L   +A   NY L L    ++  GLG
Sbjct: 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLG 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	439
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.98
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.98
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.95
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.95
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.89
2xut_A	524	Proton/peptide symporter family protein; transport	99.88
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.58
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.51
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.51
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.41
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.25
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.06
2xut_A	524	Proton/peptide symporter family protein; transport	98.69

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.6e-31  Score=259.26  Aligned_cols=325  Identities=14%  Similarity=0.097  Sum_probs=251.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655           25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT  104 (439)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  104 (439)
                      +.++..+..+++.++..++......+..|.+.+++|+|..+.|++.+++.++..++++++|+++||+|||++++.+.++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence            34455566667777888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---hhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-ccc
Q 013655          105 SAAGLLS---AFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-PRL  179 (439)
Q Consensus       105 ~~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~-~~~  179 (439)
                      +++.++.   .++++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|..++|.+++++. +..
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  181 (438)
T 3o7q_A          102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999998   88899999999999999999988 778899999999999999999999999999999999999988 555


Q ss_pred             c-------------------------hhHHHHHhHHHHHHHHHHHhcc--cCCchhhhhccchHHHHHHHHHHHHHhCCC
Q 013655          180 G-------------------------WRWLLGLSAFPSSLLLLLYSVT--PESPRYLCLKGRTAEARHVLEKIAKINGTK  232 (439)
Q Consensus       180 g-------------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (439)
                      +                         ||..|++.+++.++..++.++.  ||+++.   ++++                 
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~-----------------  241 (438)
T 3o7q_A          182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD-----------------  241 (438)
T ss_dssp             CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC-----------------
T ss_pred             ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc-----------------
Confidence            4                         9999988777666655544433  322110   0000                 


Q ss_pred             CCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHH
Q 013655          233 LPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTL  312 (439)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  312 (439)
                                                         ++                      .+....+++++++++..+...
T Consensus       242 -----------------------------------~~----------------------~~~~~~~~~~~~~~~~~~~~~  264 (438)
T 3o7q_A          242 -----------------------------------AK----------------------QGSFSASLSRLARIRHWRWAV  264 (438)
T ss_dssp             -----------------------------------SS----------------------TTSHHHHHHHHTTCSHHHHHH
T ss_pred             -----------------------------------cc----------------------ccchhhhHHHHHhChHHHHHH
Confidence                                               00                      000111556666654444333


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHh-hcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHH
Q 013655          313 LLWLVFFGNAFSYYGLVLLTTEL-NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF  391 (439)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~  391 (439)
                      +.   .++....++....+.+.+ ..+.         .|.+...++...+...++.++++++.|+++||+|||+.+..+.
T Consensus       265 ~~---~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~  332 (438)
T 3o7q_A          265 LA---QFCYVGAQTACWSYLIRYAVEEI---------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA  332 (438)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHHHHS---------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHHHHHHHHHhhhcc---------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            33   233333444455556666 4332         2466666788888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          392 FCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      ++.+++.+.+.+.++.+. ....++.+++.+..+|..+++..|.+|++
T Consensus       333 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  379 (438)
T 3o7q_A          333 LIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD  379 (438)
T ss_dssp             HHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG
T ss_pred             HHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            888888777776655443 44457778888888898888888888863

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.98  E-value=1.8e-31  Score=262.92  Aligned_cols=355  Identities=20%  Similarity=0.275  Sum_probs=247.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--------CchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHH
Q 013655           25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHL--------SPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKG   96 (439)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~   96 (439)
                      ++.+.+.++..++.+..+++...++..+|.+.++++.        +..+.|++.+++.+|..+|++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            4556666666777788888888888888888777632        34567899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh------------------hcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHH
Q 013655           97 FLITAIVTSAAGLLSA------------------FAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF  157 (439)
Q Consensus        97 ~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~  157 (439)
                      ++++.+++.++.++.+                  ++++++.++++|++.|++.|.. +....++.|+.|+++|++..++.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999887                  4789999999999999999998 78889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc--------cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHh
Q 013655          158 QTFWTVGTILEAGIAWLVMPR--------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKIN  229 (439)
Q Consensus       158 ~~~~~~g~~i~~~l~~~l~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (439)
                      +.+..+|.++++.++..+...        .+||..+.+..++.++..+..+++||+|++...+++.+++.+.+++....+
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence            999999999998888776532        358888888888888888888899999999999999888888776654321


Q ss_pred             CCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHH
Q 013655          230 GTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIK  309 (439)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  309 (439)
                      ..+           ++..+.+                    +..+++++                 .......++.+  +
T Consensus       248 ~~~-----------~~~~~~~--------------------~~~~~~~~-----------------~~~~~~~~~~~--~  277 (491)
T 4gc0_A          248 LAT-----------QAVQEIK--------------------HSLDHGRK-----------------TGGRLLMFGVG--V  277 (491)
T ss_dssp             HHH-----------HHHHHHH--------------------HHHHHHHH-----------------HTTHHHHSCCT--H
T ss_pred             hhH-----------HHHHHHH--------------------HHHHhhhh-----------------hhhHHHHhccc--H
Confidence            100           0000000                    00000000                 00111122211  1


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHH
Q 013655          310 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS  389 (439)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~  389 (439)
                      .........+.....++....+.+.+....          +.+...........++..+++.+++++++||+|||+.+..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~  347 (491)
T 4gc0_A          278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTL----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII  347 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcchHHHHhc----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc
Confidence            122222223333333344444444444221          1333334556667788899999999999999999999988


Q ss_pred             HHHHHHHHHHHHhh--c-c-ccchhhhHHHHHHhh-hhheeeeeeeeccccccCC
Q 013655          390 MFFCCCIFLVPLLF--Q-Q-PKGLTTGLLFGARIC-ITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       390 ~~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~e~~p~~  439 (439)
                      +...++++++.+..  . . +.....+..++...+ ..+..|+.+.+.+|++|++
T Consensus       348 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~  402 (491)
T 4gc0_A          348 GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA  402 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTT
T ss_pred             chHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHh
Confidence            88887776665542  1 1 112222222222222 2334577889999999975

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.98  E-value=1.9e-31  Score=259.60  Aligned_cols=344  Identities=16%  Similarity=0.175  Sum_probs=256.9

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Q 013655           24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV  103 (439)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~  103 (439)
                      ++.++..+....+..+...+......+..|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~  101 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence            345566777777888888888888899999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013655          104 TSAAGLLSAF----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR  178 (439)
Q Consensus       104 ~~~~~~~~~~----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~  178 (439)
                      .+++.++.++    +++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|.+++|.+++++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999    999999999999999999988 77889999999999999999999999999999999999998888


Q ss_pred             cc-hhHHHHHhHHHHHHHHH-HHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCC
Q 013655          179 LG-WRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSS  256 (439)
Q Consensus       179 ~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (439)
                      .| ||..|++.+++.++..+ ..+.+||+|+....+...+.                     ..+               
T Consensus       182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~---------------  225 (451)
T 1pw4_A          182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY---------------------KND---------------  225 (451)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT---------------------CCC---------------
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh---------------------ccc---------------
Confidence            98 99999998887776544 45667776532110000000                     000               


Q ss_pred             CCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 013655          257 NEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN  336 (439)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (439)
                           ..    + +  .+++++.+         ...  +....+.+++++..   +...+..++....++....+.|.+.
T Consensus       226 -----~~----~-~--~~~~~~~~---------~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  279 (451)
T 1pw4_A          226 -----YP----D-D--YNEKAEQE---------LTA--KQIFMQYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTYL  279 (451)
T ss_dssp             ----------------------------------CC--THHHHHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred             -----cc----c-c--chhhhhcc---------ccc--ccchHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 00    0 0  00000000         000  00023455554433   3333444445555666667777777


Q ss_pred             cCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHh--hhHHHHHHHHHHHH-HHHHHHhhcc--ccchhh
Q 013655          337 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL--GRKLSMSSMFFCCC-IFLVPLLFQQ--PKGLTT  411 (439)
Q Consensus       337 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~-~~~~~~~~~~--~~~~~~  411 (439)
                      .+.         .|.+....+...+...++.++++++.|++.||+  |||+.+..+..+.. ++++.+.+..  +.+...
T Consensus       280 ~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (451)
T 1pw4_A          280 KEV---------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM  350 (451)
T ss_dssp             TTB---------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred             HHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence            441         346666668888888999999999999999999  99998887776666 5555555443  344555


Q ss_pred             hHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          412 GLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       412 ~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      +..++.|++.+...+....+..|.+|++
T Consensus       351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (451)
T 1pw4_A          351 ICMIVIGFLIYGPVMLIGLHALELAPKK  378 (451)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHhchh
Confidence            6677788888888888888999999874

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.95  E-value=1.2e-26  Score=228.43  Aligned_cols=164  Identities=16%  Similarity=0.132  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHH-HHHHHHHhhh-----cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHH
Q 013655           37 GWISEAMEMMLL-SFVGPAVQSL-----WHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTSAAGL  109 (439)
Q Consensus        37 ~~~~~~~~~~~~-~~~~~~~~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~  109 (439)
                      ..+...+..+.. ....+++.++     +|.|..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~  100 (491)
T 4aps_A           21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI  100 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            333333333333 3444555555     99999999999999999999999999999999 8999999999999999999


Q ss_pred             HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 013655          110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN--RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG  186 (439)
Q Consensus       110 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~--rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~  186 (439)
                      +.+++++++.++++|++.|++.+.. +...+++.|++|+++  |+.++++++.+.++|..++|.+++++.+..|||..|+
T Consensus       101 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~  180 (491)
T 4aps_A          101 VLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS  180 (491)
T ss_dssp             HHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            9999999999999999999999988 778899999999988  7778888999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHh
Q 013655          187 LSAFPSSLLLLLYS  200 (439)
Q Consensus       187 ~~~~~~~~~~~~~~  200 (439)
                      +.++..++..+..+
T Consensus       181 ~~~~~~~~~~~~~~  194 (491)
T 4aps_A          181 LAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            98777766655443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.95  E-value=4.1e-28  Score=230.43  Aligned_cols=312  Identities=13%  Similarity=0.030  Sum_probs=228.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 013655           32 AYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS  111 (439)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  111 (439)
                      ..+++..+...+......+..|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            34555667777788888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHH
Q 013655          112 AFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAF  190 (439)
Q Consensus       112 ~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~  190 (439)
                      .++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..++|.+++++.+..|||..|++.++
T Consensus        83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  162 (375)
T 2gfp_A           83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV  162 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence            99999999999999999999988 77789999999999999999999999999999999999999998999999998888


Q ss_pred             HHHHHHH-HHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhccc
Q 013655          191 PSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARD  269 (439)
Q Consensus       191 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (439)
                      ..++..+ ..+.+||+++...++                  ++                                     
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~-------------------------------------  187 (375)
T 2gfp_A          163 LCAGVTFSMARWMPETRPVDAPR------------------TR-------------------------------------  187 (375)
T ss_dssp             HHHHHHCCCCCSSCCCSTTTCCC------------------CC-------------------------------------
T ss_pred             HHHHHHHHHHHHCcccCCCCccc------------------cc-------------------------------------
Confidence            7777655 445566653210000                  00                                     


Q ss_pred             CCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccccccccc
Q 013655          270 EDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQS  349 (439)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (439)
                                  .             ..+++++++++..   +...+..++....++....+.|.+..+         ..
T Consensus       188 ------------~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  230 (375)
T 2gfp_A          188 ------------L-------------LTSYKTLFGNSGF---NCYLLMLIGGLAGIAAFEACSGVLMGA---------VL  230 (375)
T ss_dssp             ------------T-------------TTCSTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCSCSSHH---------HH
T ss_pred             ------------H-------------HHHHHHHhcCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHH---------Hh
Confidence                        0             0012223333322   222233333333444444444544322         12


Q ss_pred             CCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHH--HHhh--ccccchhhhHHHHHHhhhhhe
Q 013655          350 GKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC-CCIFLV--PLLF--QQPKGLTTGLLFGARICITVT  424 (439)
Q Consensus       350 g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~~~  424 (439)
                      |.+....+.......++.++++++.+++.||++++.  ..+..+ ...+..  ....  .++.+...+..++.+++.+..
T Consensus       231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  308 (375)
T 2gfp_A          231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGML  308 (375)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Confidence            244455577788888889999999999999998832  222222 222222  1111  123444556677788888888


Q ss_pred             eeeeeeecccccc
Q 013655          425 FTVVYVYAPEVSH  437 (439)
Q Consensus       425 ~~~~~~~~~e~~p  437 (439)
                      .+...++..|.+|
T Consensus       309 ~~~~~~~~~~~~p  321 (375)
T 2gfp_A          309 FPLATSGAMEPFP  321 (375)
T ss_dssp             SSTTHHHHHTHHH
T ss_pred             hHHHHHHHHHhCC
Confidence            8888888888877

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.89  E-value=5.2e-24  Score=205.04  Aligned_cols=317  Identities=14%  Similarity=0.061  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH---HHHhhcch
Q 013655           41 EAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAG---LLSAFAPN  116 (439)
Q Consensus        41 ~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~---~~~~~~~~  116 (439)
                      .........++.|. +.+++|+|+.+.|++.+.+.++..++++++|+++||+|||++++.+..+.+++.   ....+.+.
T Consensus        19 ~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~   98 (417)
T 2cfq_A           19 YFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL   98 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444445554 556799999999999999999999999999999999999999998887665422   11122221


Q ss_pred             HH-HHHHHHHHHhhccCcc-hhhHHHHhhhcCC--CchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655          117 YY-LLLFFRCLVGLGLGGG-PVLASWFLEFIPA--PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS  192 (439)
Q Consensus       117 ~~-~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~  192 (439)
                      .. .+...+++.|++.+.. +...+...++.++  ++++...|....+..+|..++|.+++++.+ .+|+..|++.+++.
T Consensus        99 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~  177 (417)
T 2cfq_A           99 LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA  177 (417)
T ss_dssp             HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence            11 1334555666555543 2223333333332  456777888888889999999999999887 58999998777665


Q ss_pred             HHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCc
Q 013655          193 SLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS  272 (439)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (439)
                      ++..+..++.+++++.   +.+.++            ++                +                    .   
T Consensus       178 ~~~~~~~~~~~~~~~~---~~~~~~------------~~----------------~--------------------~---  203 (417)
T 2cfq_A          178 LILAVLLFFAKTDAPS---SATVAN------------AV----------------G--------------------A---  203 (417)
T ss_dssp             TTHHHHSCSSCCCCSC---SSCSSS------------SS----------------S--------------------S---
T ss_pred             HHHHHHHHHcCccccc---cccccc------------cc----------------c--------------------c---
Confidence            5444444444332210   000000            00                0                    0   


Q ss_pred             hhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCC
Q 013655          273 ISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKS  352 (439)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  352 (439)
                           +.+            +.....++++++++..+...+..+   .....++....+.|.+..+..+      ..+.+
T Consensus       204 -----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~  257 (417)
T 2cfq_A          204 -----NHS------------AFSLKLALELFRQPKLWFLSLYVI---GVSCTYDVFDQQFANFFTSFFA------TGEQG  257 (417)
T ss_dssp             -----CCC------------CCCHHHHHHHTTCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTSS------SHHHH
T ss_pred             -----ccc------------cccHHHHHHHhcCCchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHh------ccCCC
Confidence                 000            000113445555443333332211   1112222222234433321100      00011


Q ss_pred             CCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeec
Q 013655          353 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYA  432 (439)
Q Consensus       353 ~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  432 (439)
                      ....+...++..++.+++.++.++++||+|||+++..+..+.++..+.+.+.++.+...+..++.+++.+...+..+.++
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11225566677778889999999999999999999888888877766666555544444445555555555555567788


Q ss_pred             cccccC
Q 013655          433 PEVSHR  438 (439)
Q Consensus       433 ~e~~p~  438 (439)
                      +|.+|+
T Consensus       338 ~~~~p~  343 (417)
T 2cfq_A          338 TSQFEV  343 (417)
T ss_dssp             HHHSCH
T ss_pred             HHHCCH
Confidence            888885

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.88  E-value=4.4e-22  Score=197.43  Aligned_cols=163  Identities=14%  Similarity=0.178  Sum_probs=140.7

Q ss_pred             HHHHHHHHHH-HHHHHHHhhhcC------CCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHHH
Q 013655           39 ISEAMEMMLL-SFVGPAVQSLWH------LSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGLL  110 (439)
Q Consensus        39 ~~~~~~~~~~-~~~~~~~~~~~~------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~  110 (439)
                      ++..+..+.. ....+++.+++|      .|..+.+++.+++.++..++.+++|+++||+ |||+++..+.++.+++.++
T Consensus        22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~  101 (524)
T 2xut_A           22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF  101 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            3333333333 334455677889      9999999999999999999999999999999 9999999999999999999


Q ss_pred             Hhhcc-hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHH---HHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 013655          111 SAFAP-NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVI---FQTFWTVGTILEAGIAWLVMPRLGWRWLL  185 (439)
Q Consensus       111 ~~~~~-~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~---~~~~~~~g~~i~~~l~~~l~~~~g~~~~~  185 (439)
                      .++++ +++.+++.|++.|++.+.. +...+++.|++|+++|+++.+.   .+.+.++|..++|.+++++.+..||+..|
T Consensus       102 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f  181 (524)
T 2xut_A          102 LAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF  181 (524)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            99998 9999999999999999988 7788999999999999876666   89999999999999999999989999999


Q ss_pred             HHhHHHHHHHHHHHhc
Q 013655          186 GLSAFPSSLLLLLYSV  201 (439)
Q Consensus       186 ~~~~~~~~~~~~~~~~  201 (439)
                      ++.+++.++..+..++
T Consensus       182 ~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          182 GIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888877766555444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.58  E-value=6.2e-14  Score=135.79  Aligned_cols=170  Identities=16%  Similarity=0.112  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc--chhHHHHHHHHHHH-HHH
Q 013655           33 YAGMGWISEAMEMMLLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF--GRRKGFLITAIVTS-AAG  108 (439)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~~~~~~~~~-~~~  108 (439)
                      ...+..+...........+.|.+.++ +|.+..+.+++.+...++..++.++.|++.||+  |||+.+..+..+.. ++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  335 (451)
T 1pw4_A          256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT  335 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            33344444445555556666766655 899999999999999999999999999999999  99999888777766 666


Q ss_pred             HHHhhc--chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHH
Q 013655          109 LLSAFA--PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTV-GTILEAGIAWLVMPRLGWRWL  184 (439)
Q Consensus       109 ~~~~~~--~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~i~~~l~~~l~~~~g~~~~  184 (439)
                      ++..+.  .+.+.+.+..++.|++.+.. +....++.|..|+++||+++|+.+....+ |..++|.+.+++.+..||+..
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  415 (451)
T 1pw4_A          336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG  415 (451)
T ss_dssp             HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred             HHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            666665  36777888888899988777 66678899999999999999999999999 999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHhcc
Q 013655          185 LGLSAFPSSLLLLLYSVT  202 (439)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~  202 (439)
                      |++.+++.++..++.+++
T Consensus       416 ~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          416 FMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999888887776665544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.51  E-value=5.3e-13  Score=128.71  Aligned_cols=153  Identities=12%  Similarity=0.036  Sum_probs=123.9

Q ss_pred             HHHHHHHHHH-h-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 013655           46 MLLSFVGPAV-Q-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFF  123 (439)
Q Consensus        46 ~~~~~~~~~~-~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (439)
                      .....+.|.+ . +.+|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++. 
T Consensus       275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  353 (438)
T 3o7q_A          275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-  353 (438)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-
T ss_pred             HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-
Confidence            3344444544 4 556999999999999999999999999999999999999999999999999888888887765544 


Q ss_pred             HHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHHHHhc
Q 013655          124 RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLLLLYSV  201 (439)
Q Consensus       124 ~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  201 (439)
                      .++.|++.+.. +...++..|.+|++ ++.+.++.. ...+|..++|.+.+++.+..| ++..|++.+++.++..+..+.
T Consensus       354 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  431 (438)
T 3o7q_A          354 LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF  431 (438)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            47888888877 77778888998866 888888877 567999999999999999988 999888776655554444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.51  E-value=2.1e-13  Score=130.94  Aligned_cols=144  Identities=10%  Similarity=0.024  Sum_probs=120.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHH
Q 013655           63 PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWF  141 (439)
Q Consensus        63 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~  141 (439)
                      ....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+.. +....++
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455688888888899999999999999999999999888888888878788888888877777778776655 5566889


Q ss_pred             hhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH-hcccCCc
Q 013655          142 LEFIPAPNRGFWMVI-FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY-SVTPESP  206 (439)
Q Consensus       142 ~~~~~~~~rg~~~~~-~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~  206 (439)
                      .|.+|++.||++.++ ++....+|..++|.+++++.+..|++..|.+.+++.++..++. +..||++
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            999999999999999 5888899999999999999998899999988888877776554 4445543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.41  E-value=4.1e-12  Score=124.49  Aligned_cols=173  Identities=16%  Similarity=0.116  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh
Q 013655           34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF  113 (439)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  113 (439)
                      .....+...........+.+.+.+..+.+............+...++.++++++.||+|||+.++.+....+++.+..+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~  361 (491)
T 4gc0_A          282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  361 (491)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence            33344444455556667778888888988888888888889999999999999999999999999888887777665543


Q ss_pred             c-----chHHH-HHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc------ccch
Q 013655          114 A-----PNYYL-LLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP------RLGW  181 (439)
Q Consensus       114 ~-----~~~~~-~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~------~~g~  181 (439)
                      .     ++... ..+..+..+++.+..++.+.+.+|.+|++.|++++|+......+|..+++.+.+.+.+      ..++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~  441 (491)
T 4gc0_A          362 AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN  441 (491)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTT
T ss_pred             HHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            2     12222 2222233344455446777899999999999999999999999999998887766543      2345


Q ss_pred             hHHHHHhHHHHHHHHH-HHhcccCCc
Q 013655          182 RWLLGLSAFPSSLLLL-LYSVTPESP  206 (439)
Q Consensus       182 ~~~~~~~~~~~~~~~~-~~~~~~~~~  206 (439)
                      ...|++.++++++..+ .++++||+.
T Consensus       442 ~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          442 GFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             hHHHHHHHHHHHHHHHHHHheecCCC
Confidence            5677777777766654 467889983

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.25  E-value=2.5e-11  Score=118.92  Aligned_cols=152  Identities=16%  Similarity=0.001  Sum_probs=118.3

Q ss_pred             HHHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH-----HHHHHHHHHHHHHhhcc-------
Q 013655           49 SFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFL-----ITAIVTSAAGLLSAFAP-------  115 (439)
Q Consensus        49 ~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~-----~~~~~~~~~~~~~~~~~-------  115 (439)
                      ....+.+ .+.++.+....+++.+...++..++.++.|++.||+|||+...     .+.++.+++.++..+..       
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (491)
T 4aps_A          303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG  382 (491)
T ss_dssp             GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred             cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3344444 4456777778888889999999999999999999999986544     67777777666555532       


Q ss_pred             --hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655          116 --NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS  192 (439)
Q Consensus       116 --~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~  192 (439)
                        +.+.+.+..++.|++.+.. +....++.|..|+++||++.|+.+....+|..+++.+.+++.+ .++...|.+.+++.
T Consensus       383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~  461 (491)
T 4aps_A          383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGS  461 (491)
T ss_dssp             TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHH
Confidence              6677778888999998887 7778899999999999999999999999999999999888765 46777787777777


Q ss_pred             HHHHHHHhc
Q 013655          193 SLLLLLYSV  201 (439)
Q Consensus       193 ~~~~~~~~~  201 (439)
                      ++..+..++
T Consensus       462 ~~~~~~~~~  470 (491)
T 4aps_A          462 VVLGIVLVF  470 (491)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.06  E-value=2.1e-11  Score=115.00  Aligned_cols=155  Identities=16%  Similarity=0.091  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH-HHHHHH-
Q 013655           33 YAGMGWISEAMEMMLLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV-TSAAGL-  109 (439)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~-~~~~~~-  109 (439)
                      ...+..+...........+.|.+.++ +|.++.+.+++.+...++..++.++.+++.||+|++.  ..+..+ ...+.. 
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~  280 (375)
T 2gfp_A          203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLM  280 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            33334444444455555556655544 8999999999999999999999999999999998832  222222 222222 


Q ss_pred             -HHhh--cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 013655          110 -LSAF--APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLL  185 (439)
Q Consensus       110 -~~~~--~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~  185 (439)
                       ....  .++.+.+.+..++.|++.+.. +....++.|..| ++||++.|+.+....+|..++|.+.+.+.+..+|+..+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~  359 (375)
T 2gfp_A          281 WIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGL  359 (375)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHH
T ss_pred             HHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHH
Confidence             2222  236677778888889988887 777788899998 89999999999999999999999999998877788777


Q ss_pred             HHhHH
Q 013655          186 GLSAF  190 (439)
Q Consensus       186 ~~~~~  190 (439)
                      ++.++
T Consensus       360 ~~~~~  364 (375)
T 2gfp_A          360 LMTLM  364 (375)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.69  E-value=1.1e-08  Score=100.90  Aligned_cols=137  Identities=10%  Similarity=0.019  Sum_probs=97.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhh----hhcch----hHHHHHHHHHHHHHHHHHhhc---------chHHHHHHHHHHH
Q 013655           65 QESLITSVVFAGMLVGAYSWGIVS----DNFGR----RKGFLITAIVTSAAGLLSAFA---------PNYYLLLFFRCLV  127 (439)
Q Consensus        65 ~~g~~~~~~~~~~~~~~~~~g~l~----dr~G~----r~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~  127 (439)
                      ..+++.....++..++.++.+++.    ||.|+    ++.+..+.++.+++.++..+.         .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666666667777666654    55443    356677777788877776663         3667777888899


Q ss_pred             hhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc--ch---------hHHHHHhHHHHHHH
Q 013655          128 GLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL--GW---------RWLLGLSAFPSSLL  195 (439)
Q Consensus       128 G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~--g~---------~~~~~~~~~~~~~~  195 (439)
                      |++.+.. +....++.|..|+++||+++|+.+....+|..++|.+.+.+.+..  +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            9998888 777789999999999999999999999999999999999987742  23         33366666666655


Q ss_pred             HHHHhc
Q 013655          196 LLLYSV  201 (439)
Q Consensus       196 ~~~~~~  201 (439)
                      .++.++
T Consensus       496 ~~~~~~  501 (524)
T 2xut_A          496 AIVFAL  501 (524)
T ss_dssp             HHHHC-
T ss_pred             HHHHHH
Confidence            554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	439
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-11
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-09

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 63.9 bits (154), Expect = 1e-11
 Identities = 28/227 (12%), Positives = 66/227 (29%), Gaps = 8/227 (3%)

Query: 23  FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAY 82
           + + +  +      G+ +  +     +   P +      S        S +        +
Sbjct: 19  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKF 77

Query: 83  SWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP----NYYLLLFFRCLVGLGLGGG-PVL 137
             G VSD    R       I+ +A  L   F P    +  ++     L G   G G P  
Sbjct: 78  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137

Query: 138 ASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGI--AWLVMPRLGWRWLLGLSAFPSSLL 195
               + +     RG  + ++     VG  +   +    +         L   +     + 
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197

Query: 196 LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDW 242
           L  +++  ++P+   L           +   +    +L +  +   +
Sbjct: 198 LFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY 244

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 28/181 (15%), Positives = 51/181 (28%), Gaps = 7/181 (3%)

Query: 46  MLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS 105
               F    +  + H+S +   +I + +    L+    +G++SD  G RK  L       
Sbjct: 25  AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84

Query: 106 AAGLLSAFAPNYYLLLFFRCLVGLGLGGG-------PVLASWFLEFIPAPNRGFWMVIFQ 158
                        LL +   +  +  G            A        +    F     +
Sbjct: 85  VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR 144

Query: 159 TFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEA 218
            F  VG  L A I  ++            S     L +LL+    ++P    +       
Sbjct: 145 MFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN 204

Query: 219 R 219
            
Sbjct: 205 H 205

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	439
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.9
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.61
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.44

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.1e-30  Score=251.30  Aligned_cols=345  Identities=16%  Similarity=0.152  Sum_probs=240.8

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655           23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI  102 (439)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~  102 (439)
                      .++++|.++..+.++++..++....++...|.+. ++|+|.++.|++.+++.+++.++++++|+++||+|||+++..+.+
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            3467788888888888888888777888888776 589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc----hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655          103 VTSAAGLLSAFAP----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP  177 (439)
Q Consensus       103 ~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~  177 (439)
                      +.+++.+++++++    +++.+++.|++.|++.+.. +....++.|++|+++|++++++.+.+..+|..+++.+++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            9999988887764    6788999999999999888 7788999999999999999999999999999999999888766


Q ss_pred             c-cchhHHHHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCC
Q 013655          178 R-LGWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSS  255 (439)
Q Consensus       178 ~-~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (439)
                      . .+||..+++.+++.++..++ +++.++.|+........+..                           .+.       
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~-------  223 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK---------------------------NDY-------  223 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC---------------------------CC--------
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh---------------------------hhc-------
Confidence            4 47999998888777766554 44455544221100000000                           000       


Q ss_pred             CCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 013655          256 SNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL  335 (439)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (439)
                                    +++.+++.+           ++...+....+..++++..   +......++.....+....+.+.+
T Consensus       224 --------------~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  275 (447)
T d1pw4a_         224 --------------PDDYNEKAE-----------QELTAKQIFMQYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTY  275 (447)
T ss_dssp             -------------------------------------CCTHHHHHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------ccchhhccc-----------cccchhhHHHHHHHcCchH---HHHHHHhhhhhhhhhcchhhhhhh
Confidence                          000000000           0000011134445544433   333333344445555666677776


Q ss_pred             hcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHhh--ccccchh
Q 013655          336 NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCC---CIFLVPLLF--QQPKGLT  410 (439)
Q Consensus       336 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~---~~~~~~~~~--~~~~~~~  410 (439)
                      ..+.         .+.+....+.......+..+++.++.|++.||++|+..........   .++.+.+..  ..+.+..
T Consensus       276 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (447)
T d1pw4a_         276 LKEV---------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD  346 (447)
T ss_dssp             BTTB---------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred             cccc---------cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHH
Confidence            6442         3456666688888889999999999999999998765433322222   222222222  2234455


Q ss_pred             hhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655          411 TGLLFGARICITVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       411 ~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  439 (439)
                      .+..++.|++.++..+....+..|.+|++
T Consensus       347 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  375 (447)
T d1pw4a_         347 MICMIVIGFLIYGPVMLIGLHALELAPKK  375 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            56667777777787888888999999875

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.2e-23  Score=198.45  Aligned_cols=327  Identities=14%  Similarity=0.012  Sum_probs=206.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013655           31 LAYAGMGWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL  109 (439)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  109 (439)
                      ++.+.+.++...+......+++|. +.+++|+|+.++|++.+++.++..++++++|+++||+|||++++.+..+.+++..
T Consensus         9 ~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   88 (417)
T d1pv7a_           9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA   88 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            334444455555666666666665 5677999999999999999999999999999999999999999999988888888


Q ss_pred             HHhhcchHHHH----HHHHHHHhhccCcc-hhhHHHHhhhcC--CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 013655          110 LSAFAPNYYLL----LFFRCLVGLGLGGG-PVLASWFLEFIP--APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR  182 (439)
Q Consensus       110 ~~~~~~~~~~~----~~~~~l~G~~~g~~-~~~~~~~~~~~~--~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~  182 (439)
                      +..+..+....    ++.+.+.+.+.+.. ........+..+  .+++....+........+..+++.+++.+.+..+|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  168 (417)
T d1pv7a_          89 PFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQF  168 (417)
T ss_dssp             HHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccc
Confidence            87776655443    34444444444443 222222222222  234556677788888889999999999887754444


Q ss_pred             HHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCc
Q 013655          183 WLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTT  262 (439)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (439)
                      ..+.......+...+..+..++.+.....+++.   .          ..                               
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------~~-------------------------------  204 (417)
T d1pv7a_         169 VFWLGSGCALILAVLLFFAKTDAPSSATVANAV---G----------AN-------------------------------  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH---H----------SC-------------------------------
T ss_pred             cccchhhHHHHHHHHHHHHhcccccchhhhhhh---h----------hh-------------------------------
Confidence            444444455555555566666554211100000   0          00                               


Q ss_pred             hhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhcCCCc
Q 013655          263 PKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL-LWLVFFGNAFSYYGLVLLTTELNNGQNK  341 (439)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (439)
                                      .+            +.........++.+..+.... .................+......    
T Consensus       205 ----------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  252 (417)
T d1pv7a_         205 ----------------HS------------AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA----  252 (417)
T ss_dssp             ----------------CC------------CCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS----
T ss_pred             ----------------cc------------cccccccccccccccccchhhhhHHHHHHHHhhhcccccccccccc----
Confidence                            00            000001122222222222222 222222222222112111111110    


Q ss_pred             ccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhh
Q 013655          342 CVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICI  421 (439)
Q Consensus       342 ~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  421 (439)
                            +.+.+............++..++..+.+++.||.|+|+.+..+..+.+++.+.+.+.++.+...+..++.+++.
T Consensus       253 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  326 (417)
T d1pv7a_         253 ------TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV  326 (417)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             ------ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHH
Confidence                  01122223356667777888899999999999999999999999999999988888888888888888899999


Q ss_pred             hheeeeeeeeccccccCC
Q 013655          422 TVTFTVVYVYAPEVSHRS  439 (439)
Q Consensus       422 ~~~~~~~~~~~~e~~p~~  439 (439)
                      +...+...+++.|.+|++
T Consensus       327 ~~~~~~~~~~~~~~~~~~  344 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFEVR  344 (417)
T ss_dssp             HHHHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHHHHHHCCHh
Confidence            999999999999999864

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=3.9e-15  Score=139.30  Aligned_cols=150  Identities=9%  Similarity=-0.008  Sum_probs=130.5

Q ss_pred             HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc
Q 013655           55 VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG  134 (439)
Q Consensus        55 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~  134 (439)
                      ..++.+.+....+.......++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  329 (417)
T d1pv7a_         250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL  329 (417)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHH
Confidence            33444556677788888999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             -hhhHHHHhhhcCCCchhhHHHHH-HHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH-hcccC
Q 013655          135 -PVLASWFLEFIPAPNRGFWMVIF-QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY-SVTPE  204 (439)
Q Consensus       135 -~~~~~~~~~~~~~~~rg~~~~~~-~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~  204 (439)
                       +...+++.|.+|++.|+++.|+. +....+|..++|.+.+++.+.+||+..|++.+++.++..++. +.+++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence             77789999999999999999985 567789999999999999999999999998888877765554 44443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.8e-12  Score=122.72  Aligned_cols=152  Identities=16%  Similarity=0.136  Sum_probs=116.7

Q ss_pred             HHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH---HHHHHHHHHhh--cchHHHHHHHH
Q 013655           50 FVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI---VTSAAGLLSAF--APNYYLLLFFR  124 (439)
Q Consensus        50 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~  124 (439)
                      ....++.+.++.+..+.++..+...++..++.++.|++.||++||+.......   +..++..+...  ..+.+...+..
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (447)
T d1pw4a_         271 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM  350 (447)
T ss_dssp             HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred             hhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            33445567789999999999999999999999999999999997654333222   22222222222  34677778888


Q ss_pred             HHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655          125 CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTV-GTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV  201 (439)
Q Consensus       125 ~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  201 (439)
                      ++.|++.+.. +....+..|.+|++.||++.|+.+....+ |.+++|.+.+++.+.+||+..+++.+++.++..++...
T Consensus       351 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            8889888776 66778889999999999999998887776 56678999999999999999998877777666554433